Citrus Sinensis ID: 006490

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640---
Protein Sequence
MPGGSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGGDPAAALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSKDLNNVFSRIIWAAEHPHLNIPETETGRNRKRYRHLVNSSLVFVSVGAAVAVVGLAAYRAYAARRNSSS
Secondary Structure (PSIPRED)
ccccccccccccEEEEEEccccccHHHHHHHHHcccccccccccccccccccccccccEEEEEEEcccccccccHHHHHHccccEEEEEEEcccccHHHHHHHHHHHHHHHccccccEEEEEcccccccccccccHHHHHccHHHHHccccEEEEEcccccccHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHEEEEcccccccccHHHHHHHHcccccccccHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHcccccHHHHHHHHcccccccccccccccccccccccccccccccEEEEEEEccccccHHHHHHHHHcccccccccccccccEEEEEEEccccEEEEEEEEEcccccHHHHccccccccccEEEEEEEccccHHHHHHHHHHHHHHHHHcccccccccEEEEEEccccccccccHHHHHHHHHHHcccccEEEEEccccHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccccccEEEEEEEccccccHHHHHHHHHHHHccccccccccccEcccccccccccEEEEEcccccccHHHHHHHHHHccEEEEEEEcccHHHHHHHHHHHHHHHHHccccccEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccccHHHccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHccccHHHHHHHHHccccccccccHHcccccccccccccEEccHHHHHHHHHHHHHHcccccccccHHHHHHHHccccccccccccccccEEEcccccEEHHHHHHHHHHHHHccHHHHHHHHHHHccccccccEEEEcccccHHccccccccEEEEEEEEccccccHHHHHHHHHccccccccccccccEEEEEEEEcccccEEEEEEEEcccccHHHHHccHHHHccccEEEEEEccccHHHHHHHHHHHHHHHcccccccccccEEEEEEcccccccccccccHHHHHHHcccccccEEEEccccHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
mpggsgsssrtgVRVVVVGDRGTGKSSLIAAAatesvpekvppvhaptrlppdfypdrvpvtiidtssslenkGKLNEELKRADAVVLTYACNqqstlsrlssywlpelrrleIKVPIIVAGCkldlrgdhnatsleevmgPIMQQFREIETCVEcsattmiqvpDVFYYAQKavlhptaplfdhdeqtlKPRCVRALKRIFIICDhdmdgalndAELNEFQVKcfnaplqpaeiVGVKRVVQEkqhdgvndlgltLSGFLFLHALFIEKGRLETTWAVLRKfgygddlelrddflpvptklspdqsVELASEAVEFLRGIFglydidndgavrpaELEDlfltapespwdeapykdaaettaLGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGGDPAAALRVTRKRSVDRKKQQTERNVFrcllfgpqnagkSALLNSflerpfsenyapttgeqYAVNvvdqpggnkktlILQEIPEEGVKKILSNkealascdvtifvydssdeysWKRTKELLVEVARLgedsgygvpclliaskddlkpytmaVQDSARVTqelgieppipvsmkskdlnNVFSRIIWAaehphlnipetetgrnrkrYRHLVNSSLVFVSVGAAVAVVGLAAYRAYAARRNSSS
Flexible Loop (DISEMBL)
mpggsgsssrtgvRVVVVGDRGTGKSSLIAaaatesvpekvppvhaptrlppdfypdRVPVTIIdtssslenkgKLNEELKRADAVVLTYAcnqqstlsrlssywlpELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTaplfdhdeqTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGGDPAAALRVTrkrsvdrkkqqternvfrcllfgpqNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILsnkealascDVTIFvydssdeyswKRTKELLVEVArlgedsgygVPCLLIASKDDLKPYTMAVQDSARVTQElgieppipvsmkskDLNNVFSRIIwaaehphlnipetetgrnrKRYRHLVNSSLVFVSVGAAVAVVGLAAYRAYAARRNSSS
Low Complexity Region (SEG)
MPggsgsssrtgvrvvvvgdrgtgKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGGDPAAALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSKDLNNVFSRIIWAAEHPHLNIPETETGRNRKRYRHLVNsslvfvsvgaavavvglaayrayaarrnsss
Disordered region (IsUnstruct)
*************RVVVVG**********************************FYPDRVPVTII***************LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKL****SVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGGDPAAALRVT*************RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGI***I*V****KDLNNVFSRIIWAAEHPHLNIPETETGRNRKRYRHLVNSSLVFVSVGAAVAVVGLAAYRAYA*******
Disordered Region (DISOPRED)
**************VVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLH*****************VRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGGDPA*********************VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDL**************QELGIEPPIPVSMKSKDLNNVFSRIIWAA*********************LVNSSLVFVSVGAAVAVVGLAAYRAY*ARR****
Disordered Region (DISEMBL)
***********GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGGDPAAALR*************TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSKDLNNVFSRIIWAAEHPHLNIPETETGRNRKRYRHLVNSSLVFVSVGAAVAVVGLAAYRAYAARRNSSS
Disordered Region (DISPRO)
*********RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGGDPAAALRVTRKRSV*R*KQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSKDLNNVFSRIIWAAEHPHLNIPETETGRNRKRYRHLVNSSLVFVSVGAAVAVVGLAAYRAYAARR****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPGGSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGGDPAAALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSKDLNNVFSRIIWAAEHPHLNIPETETGRNRKRYRHLVNSSLVFVSVGAAVAVVGLAAYRAYAARRNSSS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	643	2.2.26 [Sep-21-2011]
P0CO78	686	Mitochondrial Rho GTPase	yes	no	0.948	0.889	0.388	1e-122
P0CO79	686	Mitochondrial Rho GTPase	N/A	no	0.948	0.889	0.388	1e-122
Q2HJF8	631	Mitochondrial Rho GTPase	yes	no	0.947	0.965	0.385	1e-118
Q5ZM83	618	Mitochondrial Rho GTPase	yes	no	0.934	0.972	0.396	1e-118
Q4PB75	752	Mitochondrial Rho GTPase	N/A	no	0.824	0.704	0.392	1e-118
Q8IXI2	618	Mitochondrial Rho GTPase	yes	no	0.933	0.970	0.384	1e-116
Q8BG51	631	Mitochondrial Rho GTPase	yes	no	0.939	0.957	0.382	1e-116
Q5ZM73	619	Mitochondrial Rho GTPase	no	no	0.939	0.975	0.381	1e-115
Q6NVC5	619	Mitochondrial Rho GTPase	yes	no	0.926	0.962	0.381	1e-115
Q6DIS1	616	Mitochondrial Rho GTPase	yes	no	0.905	0.944	0.380	1e-111

>sp|P0CO78|GEM1_CRYNJ Mitochondrial Rho GTPase 1 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=GEM1 PE=3 SV=1

 Score =  441 bits (1133), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 259/666 (38%), Positives = 367/666 (55%), Gaps = 56/666 (8%)

Query: 10  RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSS 69
           R  VR+V+VGD G GKSS+I +   E+    VP V     +PP+  P+    +I+DTSS+
Sbjct: 4   RDLVRIVLVGDDGVGKSSIITSLIKEAFVTNVPHVVPEVTIPPEITPENFTTSIVDTSSN 63

Query: 70  LENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRG 129
             ++  L   + RA  + L Y+    S+  R++ YWLP  RR  I VP+I+ G K+DLRG
Sbjct: 64  PRSRPHLLSSISRAHVICLVYSIADPSSFDRVAEYWLPLFRREGINVPVILVGNKIDLRG 123

Query: 130 DH-NATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQ 188
                  LE+   PIM++F+E+ET VECSA   + V +VFY+AQKAVLHPTAPL+D  E 
Sbjct: 124 GRVTNQGLEDESAPIMREFKEVETVVECSALLPLNVSEVFYFAQKAVLHPTAPLYDSREH 183

Query: 189 TLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHD 248
           TLKP+C+ ALKRIF I D D DG LN  ELN+FQ KCF+ PLQ  E+ G+  +V+     
Sbjct: 184 TLKPKCLEALKRIFTISDVDKDGLLNAHELNQFQQKCFSTPLQSQELDGILEIVRSYDPY 243

Query: 249 GVNDL---------------------------------GLTLSGFLFLHALFIEKGRLET 275
            V  L                                 G+T  GFL+LH +FI++GR+ET
Sbjct: 244 AVQPLPSSSPNTPLSRDSSYGQLHYFNNNVVPPSPPQEGITELGFLYLHTMFIQQGRMET 303

Query: 276 TWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRP 335
           TW VLRKFGYG+ L+LR+DFL     +  D SVEL+    +FL  IF  YD D DGA+  
Sbjct: 304 TWTVLRKFGYGESLDLREDFLAPKFDVPSDCSVELSPLGNQFLTDIFEAYDKDQDGALSQ 363

Query: 336 AELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVG 395
            EL+DLF T+P +PW    + D   T  +G +TL+G++++W++ TLL+ R +L  L Y+G
Sbjct: 364 NELDDLFSTSPGNPWLSQGFPDTTITDDMGRVTLQGWLAQWSMTTLLNHRTTLNYLAYLG 423

Query: 396 YGGDPA------AALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFS 449
           Y   PA       AL VTR R  DR++++  RNVF C + G   +GK++LL SF+ RPF 
Sbjct: 424 YSSSPATDLPTPTALHVTRPRKQDRRQRKVTRNVFLCYVLGATGSGKTSLLRSFVNRPFK 483

Query: 450 ------ENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503
                   Y PTT     VN V+   G +K L+LQE   +   +IL N + L   D+ I+
Sbjct: 484 GGEDGLGGYEPTTKVLSVVNSVEME-GVEKYLVLQEFGSKYESEILRNSKRLDMADIIIY 542

Query: 504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARV-TQEL 562
           V+DSSD  S+     L  +       S   +P + +A+K DL       +    V  + L
Sbjct: 543 VHDSSDTNSFSYISNLRQQY------SLDHIPSIFVATKSDLDLAQQRHEVQPDVYCRRL 596

Query: 563 GIEPPIPVSMKSKDLNNVFSRIIWAAEHPHLNIPETETGRNR--KRYRHLVNSSLVFVSV 620
           G++ P+ VS +   L+N++  I   A  P  ++P     +    +R R +    L   ++
Sbjct: 597 GLQAPMAVSSRLGPLHNLWVAITRVALDPTSSLPRGPRSQMSPAQRIRVVARWGLAATTI 656

Query: 621 GAAVAV 626
            A VAV
Sbjct: 657 SAIVAV 662

Mitochondrial GTPase involved in mitochondrial trafficking. Probably involved in control of anterograde transport of mitochondria and their subcellular distribution.
Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684)
EC: 3EC: .EC: 6EC: .EC: 5EC: .EC: -

>sp|P0CO79|GEM1_CRYNB Mitochondrial Rho GTPase 1 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=GEM1 PE=3 SV=1

 Score =  441 bits (1133), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 259/666 (38%), Positives = 367/666 (55%), Gaps = 56/666 (8%)

Query: 10  RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSS 69
           R  VR+V+VGD G GKSS+I +   E+    VP V     +PP+  P+    +I+DTSS+
Sbjct: 4   RDLVRIVLVGDDGVGKSSIITSLIKEAFVTNVPHVVPEVTIPPEITPENFTTSIVDTSSN 63

Query: 70  LENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRG 129
             ++  L   + RA  + L Y+    S+  R++ YWLP  RR  I VP+I+ G K+DLRG
Sbjct: 64  PRSRPHLLSSISRAHVICLVYSIADPSSFDRVAEYWLPLFRREGINVPVILVGNKIDLRG 123

Query: 130 DH-NATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQ 188
                  LE+   PIM++F+E+ET VECSA   + V +VFY+AQKAVLHPTAPL+D  E 
Sbjct: 124 GRVTNQGLEDESAPIMREFKEVETVVECSALLPLNVSEVFYFAQKAVLHPTAPLYDSREH 183

Query: 189 TLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHD 248
           TLKP+C+ ALKRIF I D D DG LN  ELN+FQ KCF+ PLQ  E+ G+  +V+     
Sbjct: 184 TLKPKCLEALKRIFTISDVDKDGLLNAHELNQFQQKCFSTPLQSQELDGILEIVRSYDPY 243

Query: 249 GVNDL---------------------------------GLTLSGFLFLHALFIEKGRLET 275
            V  L                                 G+T  GFL+LH +FI++GR+ET
Sbjct: 244 AVQPLPSSSPNTPLSRDSSYGQLHYFNNNVVPPSPPQEGITELGFLYLHTMFIQQGRMET 303

Query: 276 TWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRP 335
           TW VLRKFGYG+ L+LR+DFL     +  D SVEL+    +FL  IF  YD D DGA+  
Sbjct: 304 TWTVLRKFGYGESLDLREDFLAPKFDVPSDCSVELSPLGNQFLTDIFEAYDKDQDGALSQ 363

Query: 336 AELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVG 395
            EL+DLF T+P +PW    + D   T  +G +TL+G++++W++ TLL+ R +L  L Y+G
Sbjct: 364 NELDDLFSTSPGNPWLSQGFPDTTITDDMGRVTLQGWLAQWSMTTLLNHRTTLNYLAYLG 423

Query: 396 YGGDPA------AALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFS 449
           Y   PA       AL VTR R  DR++++  RNVF C + G   +GK++LL SF+ RPF 
Sbjct: 424 YSSSPATDLPTPTALHVTRPRKQDRRQRKVTRNVFLCYVLGATGSGKTSLLRSFVNRPFK 483

Query: 450 ------ENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503
                   Y PTT     VN V+   G +K L+LQE   +   +IL N + L   D+ I+
Sbjct: 484 GGEDGLGGYEPTTKVLSVVNSVEME-GVEKYLVLQEFGSKYESEILRNSKRLDMADIIIY 542

Query: 504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARV-TQEL 562
           V+DSSD  S+     L  +       S   +P + +A+K DL       +    V  + L
Sbjct: 543 VHDSSDTNSFSYISNLRQQY------SLDHIPSIFVATKSDLDLAQQRHEVQPDVYCRRL 596

Query: 563 GIEPPIPVSMKSKDLNNVFSRIIWAAEHPHLNIPETETGRNR--KRYRHLVNSSLVFVSV 620
           G++ P+ VS +   L+N++  I   A  P  ++P     +    +R R +    L   ++
Sbjct: 597 GLQAPMAVSSRLGPLHNLWVAITRVALDPTSSLPRGPRSQMSPAQRIRVVARWGLAATTI 656

Query: 621 GAAVAV 626
            A VAV
Sbjct: 657 SAIVAV 662

Mitochondrial GTPase involved in mitochondrial trafficking. Probably involved in control of anterograde transport of mitochondria and their subcellular distribution.

Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643)

EC: 3

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|Q2HJF8|MIRO1_BOVIN Mitochondrial Rho GTPase 1 OS=Bos taurus GN=RHOT1 PE=2 SV=1

 Score =  426 bits (1095), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 255/661 (38%), Positives = 375/661 (56%), Gaps = 52/661 (7%)

Query: 1   MPGGSGSSSRTG-----VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFY 55
           MP G G   R       VR+++VG+   GK+SLI +  +E  PE+VPP      +P D  
Sbjct: 1   MPAGRGRPLRAADMKKDVRILLVGEPRVGKTSLIMSLVSEEFPEEVPPRAEEITIPADVT 60

Query: 56  PDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLP---ELRRL 112
           P+RVP  I+D S + ++  +L++E+ +A+ + + YA N + ++ +++S W+P   E    
Sbjct: 61  PERVPTHIVDYSEAEQSDEQLHQEISQANVICIVYAVNNKHSIDKVTSRWIPLINERTDK 120

Query: 113 EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQ 172
           + ++P+I+ G K DL      +S+E ++ PIM Q+ EIETCVECSA  +  + ++FYYAQ
Sbjct: 121 DSRLPLILVGNKSDLV---EYSSMETIL-PIMNQYTEIETCVECSAKNLKNISELFYYAQ 176

Query: 173 KAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQP 232
           KAVLHPT PL+  +E+ +KP C++AL RIF I D D DG LNDAELN FQ  CFN PL P
Sbjct: 177 KAVLHPTGPLYCPEEKEMKPACIKALTRIFKISDQDNDGTLNDAELNFFQRICFNTPLAP 236

Query: 233 AEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELR 292
             +  VK VV++   DGV D GLTL GFLFLH LFI++GR ETTW VLR+FGY DDL+L 
Sbjct: 237 QALEDVKNVVRKHISDGVADGGLTLKGFLFLHTLFIQRGRHETTWTVLRRFGYDDDLDLT 296

Query: 293 DDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDE 352
            ++L    K+ PD + EL   A  FL+  F  +D+D D A+ P EL+DLF   P  PW  
Sbjct: 297 PEYLFPLLKIPPDCTTELNHHAYLFLQSTFDKHDLDRDCALSPDELKDLFKVFPYIPWG- 355

Query: 353 APYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYG-----GDPAAALRVT 407
               +   T   G +T +GF+S+W L T LD +  L  L Y+GY         A+A+ VT
Sbjct: 356 PDVNNTVCTNEKGWITYQGFLSQWTLTTYLDVQRCLEYLGYLGYSILTEQESQASAITVT 415

Query: 408 RKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQ--YAVNVV 465
           R + +D +K+QT+RNVFRC + G +N GKS +L + L R  +         +  YA+N V
Sbjct: 416 RDKKIDLQKKQTQRNVFRCNVIGMKNCGKSGVLQALLGRNLTRQKKIRDDHKSYYAINTV 475

Query: 466 DQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVAR 525
               G +K L+L +I E    + L+  E L  CDV   VYD S+  S++    +     +
Sbjct: 476 -YVYGQEKYLLLHDISES---EFLTEAEIL--CDVVCLVYDVSNPKSFEYCARIF---KQ 526

Query: 526 LGEDSGYGVPCLLIASKDDL----KPYTMAVQDSARVTQELGIEPPIPVSMKSKDL--NN 579
              DS   +PCL++A+K DL    + Y+++  D  R   +  + PP   +  + D    +
Sbjct: 527 HFMDS--RIPCLIVAAKSDLHEVKQEYSISPTDFCR---KHKMPPPQAFTCNTADAPSKD 581

Query: 580 VFSRIIWAAEHPHLNIPETETGRNRKRYRHLVNSSLVFVSVGAAV-AVVGLAAYRAYAAR 638
           +F ++   A +PH+   + ++     R            S GA V AV+G A Y+A   +
Sbjct: 582 IFVKLTTMAMYPHVTQADLKSSTFWLR-----------ASFGATVFAVLGFAMYKALLKQ 630

Query: 639 R 639
           R
Sbjct: 631 R 631

Mitochondrial GTPase involved in mitochondrial trafficking. Probably involved in control of anterograde transport of mitochondria and their subcellular distribution.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|Q5ZM83|MIRO2_CHICK Mitochondrial Rho GTPase 2 OS=Gallus gallus GN=RHOT2 PE=2 SV=1

 Score =  426 bits (1094), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 254/640 (39%), Positives = 358/640 (55%), Gaps = 39/640 (6%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLEN 72
           VR++++G+   GK+SLI A   E  PE+VPP      +P D  P++VP  I+D S S + 
Sbjct: 5   VRILLLGEAQVGKTSLIMALVGEEFPEEVPPRAEEITIPADVTPEKVPTHIVDYSESEQT 64

Query: 73  KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELR---RLEIKVPIIVAGCKLDLRG 129
           + +L EE+ +A+ V + Y   +++T+ ++ + W+P +        ++PII+ G K DL+ 
Sbjct: 65  EDELQEEIAKANVVCVVYDVTKEATIEKIRTKWIPMVNGGAEKGARIPIILVGNKSDLQ- 123

Query: 130 DHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQT 189
                S  EV+ PIM QF EIETCVECSA  +  + ++FYYAQKAVLHPTAPL+D +E+ 
Sbjct: 124 ---MGSSMEVILPIMNQFSEIETCVECSAKNLKNISELFYYAQKAVLHPTAPLYDPEEKQ 180

Query: 190 LKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDG 249
           L+P C RAL RIF + D D +  L+D ELN FQ  CF  PL P  +  VK VV +   DG
Sbjct: 181 LRPACSRALTRIFNLSDQDNNQILSDDELNYFQKSCFGNPLAPQALEDVKMVVWKNTTDG 240

Query: 250 VNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVE 309
           V D GLTL+GFLFL+ LFI++GR ETTW +LR+FGY D+LEL DD+L    +L P  S E
Sbjct: 241 VQDNGLTLNGFLFLNTLFIQRGRHETTWTILRRFGYDDELELTDDYLYPQFRLPPGCSTE 300

Query: 310 LASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTL 369
           L     +FL+ +F  +D D DGA+ PAEL++ F   P  PW    Y     TT  G L+L
Sbjct: 301 LNHLGYQFLQRLFEKHDKDQDGALSPAELQNFFSVFPCMPWGPELYNTVC-TTDKGLLSL 359

Query: 370 KGFVSKWALMTLLDPRHSLANLIYVGY-----GGDPAAALRVTRKRSVDRKKQQTERNVF 424
            GF+ +W L+  LD RH L  L Y+GY           AL VTR++ +D +K QT+RNVF
Sbjct: 360 HGFLCQWTLIAYLDVRHCLECLGYLGYPILSEQDSQTQALTVTREKRIDLEKGQTQRNVF 419

Query: 425 RCLLFGPQNAGKSALLNSFLERPF-SENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
            C + G + AGKSA L +FL R   ++  +P     Y +N V Q  G +K LIL E+  E
Sbjct: 420 LCKVLGARGAGKSAFLQAFLGRSLAAQRESPGEPSPYTINTV-QVNGQEKYLILHEVSAE 478

Query: 484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKD 543
                   K + A+CDV   +YD SD  S+     +  +     +     +PC+ +ASK 
Sbjct: 479 ----TQFTKPSDAACDVACLIYDLSDPKSFSYCASIYKQHYMDSQ-----IPCVFVASKT 529

Query: 544 DLKPYTMAVQDS-ARVTQELGIEPPIPVSMKSKDL--NNVFSRIIWAAEHPHLNIPETET 600
           DL   +     S A    +  + PP   S  S+      +++++  AA  PHLN  E   
Sbjct: 530 DLPEASQQPGLSPAEFCYKHCLPPPFLFSCHSQGPPGTAIYTKLATAATFPHLNAVELGA 589

Query: 601 GRNRKRYRHLVNSSLVFVSVGAAV-AVVGLAAYRAYAARR 639
                       S  + V++GAAV A+VG   YR  A  +
Sbjct: 590 A-----------SFWLRVALGAAVTALVGFTLYRVLAKNK 618

Mitochondrial GTPase involved in mitochondrial trafficking. Probably involved in control of anterograde transport of mitochondria and their subcellular distribution.

Gallus gallus (taxid: 9031)

EC: 3

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|Q4PB75|GEM1_USTMA Mitochondrial Rho GTPase 1 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=GEM1 PE=3 SV=1

 Score =  425 bits (1093), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 237/604 (39%), Positives = 343/604 (56%), Gaps = 74/604 (12%)

Query: 10  RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSS 69
           R  VR+V+ GD   GKS+LI +   E+   KV  V  P  LPP+  P+ V   I+DTSSS
Sbjct: 2   RKDVRIVLAGDPDVGKSTLITSLVKEAYVAKVQKVVPPITLPPEVAPEAVVTKIVDTSSS 61

Query: 70  LENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLR- 128
            E++  L  EL+RA+ + + Y+ +  S+  R+ +YWLP +R L + VP+I+ G K+DLR 
Sbjct: 62  PEHRANLEAELRRANVICIVYSISAPSSFDRIPTYWLPYIRSLGVNVPVILVGNKIDLRS 121

Query: 129 GDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQ 188
           GD    +LE+ + P+M +F+E+ETCVECSA   + V +VFY+AQKAVL+PTAPL+D  E 
Sbjct: 122 GDVTNAALEDELAPVMAEFKEVETCVECSARIPLNVSEVFYFAQKAVLYPTAPLYDSREH 181

Query: 189 TLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQE---- 244
            LKP CV ALKRIF +CD D DG L+D ELN+FQ KCF+ PLQ  E+ G+K +V +    
Sbjct: 182 VLKPACVDALKRIFRLCDSDKDGLLSDGELNDFQRKCFDTPLQAQELEGIKDLVVQAPIA 241

Query: 245 -----------------------KQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLR 281
                                    H  + +  LT++GFL+LH LFI++GRLETTW VLR
Sbjct: 242 GLRYNHENSSVAASGSSANGDIPSHHPHLREGSLTMAGFLYLHTLFIQRGRLETTWTVLR 301

Query: 282 KFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDL 341
            FGYG DL L+D F+     + P+ SVEL+    +FL  IF ++D D DGA+   EL+ L
Sbjct: 302 TFGYGVDLSLQDSFVKPAFAVPPECSVELSPNGYQFLTDIFEVHDKDRDGALSEEELDSL 361

Query: 342 FLTAPES--PWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGY--- 396
           F+TAP++  PW    +  +  T   G +TL+G++++W++ TLLD R +LA L Y+GY   
Sbjct: 362 FITAPDNRHPWQGTGFPTSTITDEHGAVTLQGWLAQWSMTTLLDHRTTLAYLAYLGYPSF 421

Query: 397 -----------------------GGDPA-----------AALRVTRKRSVDRKKQ-QTER 421
                                  G  P+            AL++TR R  D+KK+   +R
Sbjct: 422 PLSGSSGSASTPAPIPLTPTGPPGSRPSRNRTPCPPSTITALKLTRPRKTDKKKKGAIQR 481

Query: 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIP 481
           +VF   + G   +GK+A+L + + + F+  Y PT      V+ V+Q  G ++ L+LQE  
Sbjct: 482 SVFLGFVLGAAGSGKTAILRNMVGKRFANAYEPTQKMMSVVSTVEQ-AGAERYLVLQEFG 540

Query: 482 EEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIAS 541
                ++L N   L++ DV +FVYDSSD  S+     L  +   L       +P L +A+
Sbjct: 541 SRYEAEVLRNTAKLSAADVIVFVYDSSDTNSFSYISNLRQQYPLL-----QSMPSLFVAT 595

Query: 542 KDDL 545
           K DL
Sbjct: 596 KADL 599

Mitochondrial GTPase involved in mitochondrial trafficking. Probably involved in control of anterograde transport of mitochondria and their subcellular distribution.

Ustilago maydis (strain 521 / FGSC 9021) (taxid: 237631)

EC: 3

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|Q8IXI2|MIRO1_HUMAN Mitochondrial Rho GTPase 1 OS=Homo sapiens GN=RHOT1 PE=1 SV=2

 Score =  421 bits (1081), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 249/647 (38%), Positives = 370/647 (57%), Gaps = 47/647 (7%)

Query: 10  RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSS 69
           +  VR+++VG+   GK+SLI +  +E  PE+VPP      +P D  P+RVP  I+D S +
Sbjct: 2   KKDVRILLVGEPRVGKTSLIMSLVSEEFPEEVPPRAEEITIPADVTPERVPTHIVDYSEA 61

Query: 70  LENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLP---ELRRLEIKVPIIVAGCKLD 126
            ++  +L++E+ +A+ + + YA N + ++ +++S W+P   E    + ++P+I+ G K D
Sbjct: 62  EQSDEQLHQEISQANVICIVYAVNNKHSIDKVTSRWIPLINERTDKDSRLPLILVGNKSD 121

Query: 127 LRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHD 186
           L      +S+E ++ PIM Q+ EIETCVECSA  +  + ++FYYAQKAVLHPT PL+  +
Sbjct: 122 LV---EYSSMETIL-PIMNQYTEIETCVECSAKNLKNISELFYYAQKAVLHPTGPLYCPE 177

Query: 187 EQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQ 246
           E+ +KP C++AL RIF I D D DG LNDAELN FQ  CFN PL P  +  VK VV++  
Sbjct: 178 EKEMKPACIKALTRIFKISDQDNDGTLNDAELNFFQRICFNTPLAPQALEDVKNVVRKHI 237

Query: 247 HDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQ 306
            DGV D GLTL GFLFLH LFI++GR ETTW VLR+FGY DDL+L  ++L    K+ PD 
Sbjct: 238 SDGVADSGLTLKGFLFLHTLFIQRGRHETTWTVLRRFGYDDDLDLTPEYLFPLLKIPPDC 297

Query: 307 SVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGN 366
           + EL   A  FL+  F  +D+D D A+ P EL+DLF   P  PW      +   T   G 
Sbjct: 298 TTELNHHAYLFLQSTFDKHDLDRDCALSPDELKDLFKVFPYIPWG-PDVNNTVCTNERGW 356

Query: 367 LTLKGFVSKWALMTLLDPRHSLANLIYVGYG-----GDPAAALRVTRKRSVDRKKQQTER 421
           +T +GF+S+W L T LD +  L  L Y+GY         A+A+ VTR + +D +K+QT+R
Sbjct: 357 ITYQGFLSQWTLTTYLDVQRCLEYLGYLGYSILTEQESQASAVTVTRDKKIDLQKKQTQR 416

Query: 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQ--YAVNVVDQPGGNKKTLILQE 479
           NVFRC + G +N GKS +L + L R            +  YA+N V    G +K L+L +
Sbjct: 417 NVFRCNVIGVKNCGKSGVLQALLGRNLMRQKKIREDHKSYYAINTV-YVYGQEKYLLLHD 475

Query: 480 IPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLI 539
           I E    + L+  E +  CDV   VYD S+  S++    +     +   DS   +PCL++
Sbjct: 476 ISE---SEFLTEAEII--CDVVCLVYDVSNPKSFEYCARIF---KQHFMDS--RIPCLIV 525

Query: 540 ASKDDL----KPYTMAVQDSARVTQELGIEPPIPVSMKSKDL--NNVFSRIIWAAEHPHL 593
           A+K DL    + Y+++  D  R   +  + PP   +  + D    ++F ++   A +PH+
Sbjct: 526 AAKSDLHEVKQEYSISPTDFCR---KHKMPPPQAFTCNTADAPSKDIFVKLTTMAMYPHV 582

Query: 594 NIPETETGRNRKRYRHLVNSSLVFVSVGAAV-AVVGLAAYRAYAARR 639
              + ++     R            S GA V AV+G A Y+A   +R
Sbjct: 583 TQADLKSSTFWLR-----------ASFGATVFAVLGFAMYKALLKQR 618

Mitochondrial GTPase involved in mitochondrial trafficking. Probably involved in control of anterograde transport of mitochondria and their subcellular distribution.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|Q8BG51|MIRO1_MOUSE Mitochondrial Rho GTPase 1 OS=Mus musculus GN=Rhot1 PE=2 SV=1

 Score =  419 bits (1077), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 249/651 (38%), Positives = 370/651 (56%), Gaps = 47/651 (7%)

Query: 6   GSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIID 65
            S  +  VR+++VG+   GK+SLI +  +E  PE+VPP      +P D  P+RVP  I+D
Sbjct: 11  ASDMKKDVRILLVGEPRVGKTSLIMSLVSEEFPEEVPPRAEEITIPADVTPERVPTHIVD 70

Query: 66  TSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLP---ELRRLEIKVPIIVAG 122
            S + ++  +L++E+ +A+ + + YA N + ++ +++S W+P   E    + ++P+I+ G
Sbjct: 71  YSEAEQSDEQLHQEISQANVICIVYAVNNKHSIDKVTSRWIPLINERTDKDSRLPLILVG 130

Query: 123 CKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPL 182
            K DL      +S+E ++ PIM Q+ EIETCVECSA  +  + ++FYYAQKAVLHPT PL
Sbjct: 131 NKSDLV---EYSSMETIL-PIMNQYTEIETCVECSAKNLKNISELFYYAQKAVLHPTGPL 186

Query: 183 FDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVV 242
           +  +E+ +KP C++AL RIF I D D DG LNDAELN FQ  CFN PL P  +  VK VV
Sbjct: 187 YCPEEKEMKPACIKALTRIFKISDQDNDGTLNDAELNFFQRICFNTPLAPQALEDVKNVV 246

Query: 243 QEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKL 302
           ++   DGV D GLTL GFLFLH LFI++GR ETTW VLR+FGY DDL+L  ++L    K+
Sbjct: 247 RKHLSDGVADSGLTLRGFLFLHTLFIQRGRHETTWTVLRRFGYDDDLDLTPEYLFPLLKI 306

Query: 303 SPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETT 362
            PD + EL   A  FL+  F  +D+D D A+ P EL+DLF   P  PW      +   T 
Sbjct: 307 PPDCTTELNHHAYLFLQSTFDKHDLDRDCALSPDELKDLFQVFPYIPWG-PDVNNTVCTN 365

Query: 363 ALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYG-----GDPAAALRVTRKRSVDRKKQ 417
             G +T +GF+S+W L T LD +  L  L Y+GY         A+A+ VTR + +D +K+
Sbjct: 366 ERGWITYQGFLSQWTLTTYLDVQRCLEYLGYLGYSILTEQESQASAITVTRDKKIDLQKK 425

Query: 418 QTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQ--YAVNVVDQPGGNKKTL 475
           QT+RNVFRC + G +  GK+ +L S L R            +  YA+N V    G +K L
Sbjct: 426 QTQRNVFRCNVIGVKGCGKTGVLQSLLGRNLMRQKKIRDDHKSYYAINTV-YVYGQEKYL 484

Query: 476 ILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVP 535
           +L +I E    + L+  E +  CDV   VYD ++  S++    +     +   DS   +P
Sbjct: 485 LLHDISE---SEFLTEAETI--CDVVCLVYDVTNPKSFEYCARIF---KQHFMDS--RIP 534

Query: 536 CLLIASKDDL----KPYTMAVQDSARVTQELGIEPPIPVSMKSKDL--NNVFSRIIWAAE 589
           CL++A+K DL    + ++++  D  R   +  + PP   +  + D    ++F ++   A 
Sbjct: 535 CLIVAAKSDLHEVKQEHSISPTDFCR---KHKMPPPQAFTCNTADAPSKDIFVKLTTMAM 591

Query: 590 HPHLNIPETETGRNRKRYRHLVNSSLVFVSVGAAV-AVVGLAAYRAYAARR 639
           +PH+   + ++     R            S GA V AVVG A YRA   +R
Sbjct: 592 YPHVTQADLKSSTFWLR-----------ASFGATVFAVVGFAMYRALLKQR 631

Mitochondrial GTPase involved in mitochondrial trafficking. Probably involved in control of anterograde transport of mitochondria and their subcellular distribution.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|Q5ZM73|MIRO1_CHICK Mitochondrial Rho GTPase 1 OS=Gallus gallus GN=RHOT1 PE=2 SV=1

 Score =  417 bits (1071), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 246/644 (38%), Positives = 363/644 (56%), Gaps = 40/644 (6%)

Query: 10  RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSS 69
           +  VR+++VG+   GK+SLI +  +E  PE+VPP      +P D  P+RVP  I+D S +
Sbjct: 2   KKDVRILLVGEPRVGKTSLIMSLVSEEFPEEVPPRAEEITIPADVTPERVPTHIVDYSEA 61

Query: 70  LENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLP---ELRRLEIKVPIIVAGCKLD 126
            +N  +L  E+ +A+ + + YA N ++++ +++S W+P   E    + ++P+I+ G K D
Sbjct: 62  EQNDEQLYHEISQANVICIVYAVNNKNSIDKVTSRWIPLINERTDKDSRLPLILVGNKSD 121

Query: 127 LRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHD 186
           L      +S+E ++ PIM Q+ EIETCVECSA  +    ++FYYAQKAVLHPT PL+  +
Sbjct: 122 LV---EYSSMETIL-PIMNQYTEIETCVECSAKNLKNRSELFYYAQKAVLHPTGPLYCPE 177

Query: 187 EQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQ 246
           E+ +KP C++AL RIF I D D DG LNDAELN FQ  CFN PL P  +  VK VV++  
Sbjct: 178 EKEMKPACIKALTRIFRISDQDNDGTLNDAELNFFQRICFNTPLAPQALEDVKNVVRKNV 237

Query: 247 HDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQ 306
            DGV D GLTL GFLFLH LFI++GR ETTW VLR+FGY DDLEL  ++L    K+ PD 
Sbjct: 238 SDGVADNGLTLKGFLFLHTLFIQRGRHETTWTVLRRFGYDDDLELTPEYLFPLLKIPPDC 297

Query: 307 SVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGN 366
           + EL   A  FL+ IF  +D+D D A+ P EL+DLF   P  PW              G 
Sbjct: 298 TTELNHHAYLFLQSIFDKHDLDRDCALSPDELKDLFKVFPYMPWGPDVNNTVCTNGKGGW 357

Query: 367 LTLKGFVSKWALMTLLDPRHSLANLIYVGYG-----GDPAAALRVTRKRSVDRKKQQTER 421
           +T +GF+S+W L T LD +  L  L Y+GY         A+A+ VTR + +D +K+QT+R
Sbjct: 358 ITYQGFLSQWTLTTYLDVQRCLEYLGYLGYSILAEQESQASAITVTRDKKIDLQKKQTQR 417

Query: 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQ--YAVNVVDQPGGNKKTLILQE 479
           NVFRC + G +  GKS +L + L R            +  YA+N V    G +K L+L +
Sbjct: 418 NVFRCNVVGMKGCGKSGVLQALLGRNLMRQRQIRAEHKSYYAINTV-YVYGQEKYLLLHD 476

Query: 480 IPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLI 539
           + +    + L++ E +  CDV   VYD S+  S++    +     +   DS   +PCL++
Sbjct: 477 VSD---SEFLTDAETI--CDVVCLVYDVSNPKSFEYCVRIF---KQHFMDS--RIPCLVV 526

Query: 540 ASKDDLKPYTMAVQDS-ARVTQELGIEPPIPVSMKSKDL--NNVFSRIIWAAEHPHLNIP 596
           A+K DL         S A   ++  + PP   +  + D+   ++F ++   A +PH+   
Sbjct: 527 AAKSDLHEVRQEYSISPAEFCKKHKMPPPQAFTCNTVDMPSKDIFVKLTTMAMYPHVTQA 586

Query: 597 ETETGRNRKRYRHLVNSSLVFVSVGAAV-AVVGLAAYRAYAARR 639
           + ++     R            S GA V A +G A Y+A   +R
Sbjct: 587 DLKSSTFWLR-----------ASFGATVFAFLGFAMYKALIKQR 619

Mitochondrial GTPase involved in mitochondrial trafficking. Probably involved in control of anterograde transport of mitochondria and their subcellular distribution.

Gallus gallus (taxid: 9031)

EC: 3

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|Q6NVC5|MIRO1_DANRE Mitochondrial Rho GTPase 1-A OS=Danio rerio GN=rhot1a PE=2 SV=1

 Score =  416 bits (1070), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 249/652 (38%), Positives = 371/652 (56%), Gaps = 56/652 (8%)

Query: 10  RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSS 69
           R  VR+++VG+   GK+SLI +  +E  P++VPP      +P D  P+RVP  I+D S +
Sbjct: 2   RKDVRILLVGEPKVGKTSLIMSLVSEEFPDEVPPRAEEITIPADVTPERVPTHIVDYSEA 61

Query: 70  LENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLP---ELRRLEIKVPIIVAGCKLD 126
            ++  +L +E+ +A+ + + Y+ N + ++ +++S+W+P   E    + +VP+I+ G K D
Sbjct: 62  EQSDEQLYQEITKANVICIVYSVNNKKSIEKVTSHWIPLINERTDKDSRVPLILVGNKSD 121

Query: 127 LRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHD 186
           L  +H  +S+E ++ PIM Q+ EIETCVECSA  +  + ++FYYAQKAVLHPT PL+  +
Sbjct: 122 L-VEH--SSMETIL-PIMNQYSEIETCVECSAKNLKNISELFYYAQKAVLHPTGPLYSPE 177

Query: 187 EQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQ 246
           E+ +KP C++AL RIF I D D DG LND ELN FQ  CFN PL P  +  VK VV++  
Sbjct: 178 EKEMKPSCIKALTRIFKISDLDNDGILNDNELNFFQRTCFNIPLAPQALEDVKNVVRKNM 237

Query: 247 HDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQ 306
            DGV D GLTL GFLFLH LFI++GR ETTW VLR+FGY DDLEL  ++L    K+ PD 
Sbjct: 238 TDGVKDNGLTLKGFLFLHTLFIQRGRHETTWTVLRRFGYDDDLELTQEYLFPLFKIPPDC 297

Query: 307 SVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGN 366
           + EL   A  FL+ +F  +D D D A+ P EL+DLF   P  PW      +   T   G 
Sbjct: 298 TTELNHNAYLFLQSVFDKHDKDRDCALSPDELKDLFKVFPYMPWG-PDVNNTVCTNEQGW 356

Query: 367 LTLKGFVSKWALMTLLDPRHSLANLIYVGYG-----GDPAAALRVTRKRSVDRKKQQTER 421
           +T +G++S+W L T LD +  L  L Y+GY         AAA+ VTR + +D +K+QT+R
Sbjct: 357 ITYQGYLSQWTLTTYLDVQRCLEYLGYLGYSIIQEQESQAAAITVTRNKRIDLQKKQTQR 416

Query: 422 NVFRCLLFGPQNAGKSALLNSFLERPF--SENYAPTTGEQYAVNVVDQPGGNKKTLILQE 479
           +VFRC + G +  GKS  L +FL R     +         YA++     G  K  L+ + 
Sbjct: 417 SVFRCNVLGARGCGKSGFLQAFLGRNLVRQKRIREDHKSYYAISTTYVYGQEKYLLLHEV 476

Query: 480 IPEEGVKKILSNKEALASCDVTIFVYDSSD----EYSWKRTKELLVEVARLGEDSGYGVP 535
           +P+    + LS  EA  +CDV   VYD S+    EY  K  K+  ++            P
Sbjct: 477 LPD---VEFLS--EADLACDVVCLVYDISNPRSFEYCAKVYKKHFMDSK---------TP 522

Query: 536 CLLIASKDDL----KPYTMAVQDSARVTQELGIEPPIPVSMKSKDL--NNVFSRIIWAAE 589
           C++IA+K DL    + Y+++  D  R   +  + PP   +  + +    ++++++   A 
Sbjct: 523 CVIIAAKSDLHEARQYYSLSPLDFCR---KHKLHPPQLFTCNTTEAPSKDLYTKLTTMAM 579

Query: 590 HPHLNIPETETGRNRKRYRHLVNSSLVF-VSVGAAV-AVVGLAAYRAYAARR 639
           +PH+   +            L NS+     SVGA V AV+G A Y+A   +R
Sbjct: 580 YPHMTQAD------------LKNSTFWLRASVGATVFAVLGFAMYKALLKQR 619

Mitochondrial GTPase involved in mitochondrial trafficking. Probably involved in control of anterograde transport of mitochondria and their subcellular distribution.

Danio rerio (taxid: 7955)

EC: 3

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|Q6DIS1|MIRO2_XENTR Mitochondrial Rho GTPase 2 OS=Xenopus tropicalis GN=rhot2 PE=2 SV=1

 Score =  402 bits (1033), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 246/647 (38%), Positives = 353/647 (54%), Gaps = 65/647 (10%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLEN 72
           VR++++G+   GK+SLI A   E  P++VP       +P D  P+R+P  I+D S   + 
Sbjct: 5   VRILLLGEAQVGKTSLIMALVGEEFPDEVPSRAEEITIPADVTPERIPTHIVDYSGVEQT 64

Query: 73  KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELR---RLEIKVPIIVAGCKLDLRG 129
           + +L EE+ +A+ V + Y      T+ ++ S W+P +        ++PII+ G K DL+ 
Sbjct: 65  EDELREEIAKANVVCVVYDVTDLETIEKIGSKWIPMVNGNAERNSRLPIILVGNKSDLQC 124

Query: 130 DHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQT 189
               +S+E ++ PIM QF EIETCVECSA  +  + +VFYYAQKAVLHPTAPL+D +E+ 
Sbjct: 125 ---GSSMESIL-PIMNQFSEIETCVECSAKNLKNISEVFYYAQKAVLHPTAPLYDPEEKQ 180

Query: 190 LKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDG 249
           L+P+C +AL RIF I + D +  L+D ELN FQ  CF  PL P  +  VK VV++   DG
Sbjct: 181 LRPQCKKALTRIFTISEQDNNQILSDEELNFFQQSCFGNPLAPQALEDVKMVVKKNTADG 240

Query: 250 VNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVE 309
           V D GLTL+GFLFL+ LFI++GR ETTW +LR+FGY D LEL DD+L  P ++  + S E
Sbjct: 241 VRDNGLTLNGFLFLNTLFIQRGRHETTWTILRRFGYDDALELTDDYLYPPLRIPHESSTE 300

Query: 310 LASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGN-LT 368
           L     +FL+  F  +D+D DGA+ P+EL+  F   P +PW   P   +   TA G  L 
Sbjct: 301 LNHFGYQFLQKAFEKHDLDEDGALSPSELQSFFSVFPYTPW--GPELASTVCTAQGGYLP 358

Query: 369 LKGFVSKWALMTLLDPRHSLANLIYVGY-----GGDPAAALRVTRKRSVDRKKQQTERNV 423
           L G++ +W L+  LD    L +L Y+GY           A+ VTR++S+D +K QT+RNV
Sbjct: 359 LHGYLCQWTLVAYLDVHRCLEHLGYLGYPILCEQESQTHAITVTREKSIDLEKGQTQRNV 418

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSE----NYAPTTGEQYAVNVVDQPGGNKKTLILQE 479
           F C + GP+  GKSA L +FL +   E    N  P+    Y+VN V   GG +K LIL E
Sbjct: 419 FLCRVIGPRGTGKSAFLRAFLGQSLEEQQQSNKPPSF---YSVNTV-LVGGQEKYLILFE 474

Query: 480 IPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLI 539
           +  +   + L  K + A CDV   +YD SD  S+     +  +     +      PCL +
Sbjct: 475 VDVD--TEFL--KTSDAPCDVACLMYDVSDSKSFNYCASIYKQHYMESQ-----TPCLFV 525

Query: 540 ASKDDLKPYTMAVQDSARVTQELGIE-----------PPIPVSMKSKDLNNVFSRIIWAA 588
             K           D   V Q+ GI            PP   + +      ++S++  AA
Sbjct: 526 GCK----------YDQGEVKQQHGISPAEFCHKHRLPPPYHFTCQGTPDRTIYSKLATAA 575

Query: 589 EHPHLNIPETETGRNRKRYRHLVNSSLVFVSVGAAV-AVVGLAAYRA 634
             PHL+  E  T            S  + V++GA V AVVG   Y+A
Sbjct: 576 AFPHLHDTELSTA-----------SFWLRVALGATVAAVVGFTLYKA 611

Mitochondrial GTPase involved in mitochondrial trafficking. Probably involved in control of anterograde transport of mitochondria and their subcellular distribution.

Xenopus tropicalis (taxid: 8364)

EC: 3

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	643
225450975	647	PREDICTED: mitochondrial Rho GTPase 1 [V	0.996	0.990	0.717	0.0
296088320	684	unnamed protein product [Vitis vinifera]	0.996	0.937	0.717	0.0
224082628	645	predicted protein [Populus trichocarpa]	1.0	0.996	0.744	0.0
255559464	644	rac-GTP binding protein, putative [Ricin	1.0	0.998	0.739	0.0
225436934	639	PREDICTED: mitochondrial Rho GTPase 1 [V	0.964	0.970	0.731	0.0
150036254	647	ATP/GTP/Ca++ binding protein [Cucumis me	0.990	0.984	0.704	0.0
449462328	639	PREDICTED: LOW QUALITY PROTEIN: mitochon	0.982	0.989	0.708	0.0
449442827	647	PREDICTED: mitochondrial Rho GTPase 1-li	0.990	0.984	0.703	0.0
449482860	648	PREDICTED: mitochondrial Rho GTPase 1-li	0.990	0.983	0.702	0.0
224125274	651	predicted protein [Populus trichocarpa]	0.982	0.970	0.697	0.0

>gi|225450975|ref|XP_002284757.1| PREDICTED: mitochondrial Rho GTPase 1 [Vitis vinifera]

 Score =  993 bits (2568), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 460/641 (71%), Positives = 551/641 (85%)

Query: 3   GGSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVT 62
           G + S +RTGVR+VV GDRGTGKSSLI  AA E+ P  V PV  PTRLP DFYPDRVP+T
Sbjct: 7   GATNSGNRTGVRIVVAGDRGTGKSSLIVTAAAENFPANVAPVLPPTRLPDDFYPDRVPIT 66

Query: 63  IIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAG 122
           IIDTSSSLEN+  L +EL+RADAVVLTYAC+Q +TL RLS++WLPELRRLE+KVP+IV G
Sbjct: 67  IIDTSSSLENRSALADELRRADAVVLTYACDQPATLDRLSTFWLPELRRLEVKVPVIVVG 126

Query: 123 CKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPL 182
           CKLDLR ++   SLE+VM PIMQQFREIETC+ECSA+T IQ+P+VFYYAQKAVLHPT PL
Sbjct: 127 CKLDLRDENQQMSLEQVMSPIMQQFREIETCIECSASTHIQIPEVFYYAQKAVLHPTGPL 186

Query: 183 FDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVV 242
           FD + QTLKPRCVRALKRIFI+CDHD DGAL+DAELN+FQVKCFNAPLQP+EI GVKRVV
Sbjct: 187 FDQETQTLKPRCVRALKRIFILCDHDRDGALSDAELNDFQVKCFNAPLQPSEISGVKRVV 246

Query: 243 QEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKL 302
           QEK H+GVND GLTL+GFLFLHALFIEKGRLETTW VLRKFGY +D++LR+D +P+  K 
Sbjct: 247 QEKLHEGVNDRGLTLTGFLFLHALFIEKGRLETTWTVLRKFGYNNDIKLREDLIPLSFKR 306

Query: 303 SPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETT 362
           +PDQ++EL +EA+EFL+GIF L+DID DGA+ P EL DLF TAPESPW EAPYKDAAE T
Sbjct: 307 APDQNMELTTEALEFLKGIFSLFDIDGDGALHPDELVDLFSTAPESPWIEAPYKDAAEKT 366

Query: 363 ALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGGDPAAALRVTRKRSVDRKKQQTERN 422
           ALG L+L GF+S+WAL+TLLDP  SL NLIY+GY GDP +A+RVTRKR +DRKKQQ++RN
Sbjct: 367 ALGGLSLDGFLSEWALLTLLDPVSSLENLIYIGYAGDPPSAMRVTRKRRLDRKKQQSDRN 426

Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
           VF+C +FGP+ AGKS LLN+FL RPFS++Y PT  E+YAVNVVDQPGG+KKTL+L+EI E
Sbjct: 427 VFQCFVFGPKEAGKSGLLNAFLGRPFSDSYNPTIDERYAVNVVDQPGGSKKTLVLREIAE 486

Query: 483 EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASK 542
           +GV+K+LS +++LA+CD+ +FVYDSSDE SWKR  ELLVEVA  GE++ Y VPCL++A+K
Sbjct: 487 DGVRKLLSKRDSLAACDIALFVYDSSDESSWKRATELLVEVASHGENTSYEVPCLIVAAK 546

Query: 543 DDLKPYTMAVQDSARVTQELGIEPPIPVSMKSKDLNNVFSRIIWAAEHPHLNIPETETGR 602
           DDL PY MA+ DS R+TQ++GIEPPIP+S K  D N +F RII AAEHPHL+IPETE GR
Sbjct: 547 DDLDPYPMAIHDSTRLTQDMGIEPPIPISAKLGDFNTIFRRIIAAAEHPHLSIPETEAGR 606

Query: 603 NRKRYRHLVNSSLVFVSVGAAVAVVGLAAYRAYAARRNSSS 643
           +RK+Y  L+N SL+ VSVGAAVA+VGLAAYR YAAR+++SS
Sbjct: 607 SRKQYSRLINRSLMVVSVGAAVAIVGLAAYRVYAARKSASS 647

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296088320|emb|CBI36765.3| unnamed protein product [Vitis vinifera]

 Score =  992 bits (2565), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 460/641 (71%), Positives = 551/641 (85%)

Query: 3   GGSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVT 62
           G + S +RTGVR+VV GDRGTGKSSLI  AA E+ P  V PV  PTRLP DFYPDRVP+T
Sbjct: 44  GATNSGNRTGVRIVVAGDRGTGKSSLIVTAAAENFPANVAPVLPPTRLPDDFYPDRVPIT 103

Query: 63  IIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAG 122
           IIDTSSSLEN+  L +EL+RADAVVLTYAC+Q +TL RLS++WLPELRRLE+KVP+IV G
Sbjct: 104 IIDTSSSLENRSALADELRRADAVVLTYACDQPATLDRLSTFWLPELRRLEVKVPVIVVG 163

Query: 123 CKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPL 182
           CKLDLR ++   SLE+VM PIMQQFREIETC+ECSA+T IQ+P+VFYYAQKAVLHPT PL
Sbjct: 164 CKLDLRDENQQMSLEQVMSPIMQQFREIETCIECSASTHIQIPEVFYYAQKAVLHPTGPL 223

Query: 183 FDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVV 242
           FD + QTLKPRCVRALKRIFI+CDHD DGAL+DAELN+FQVKCFNAPLQP+EI GVKRVV
Sbjct: 224 FDQETQTLKPRCVRALKRIFILCDHDRDGALSDAELNDFQVKCFNAPLQPSEISGVKRVV 283

Query: 243 QEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKL 302
           QEK H+GVND GLTL+GFLFLHALFIEKGRLETTW VLRKFGY +D++LR+D +P+  K 
Sbjct: 284 QEKLHEGVNDRGLTLTGFLFLHALFIEKGRLETTWTVLRKFGYNNDIKLREDLIPLSFKR 343

Query: 303 SPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETT 362
           +PDQ++EL +EA+EFL+GIF L+DID DGA+ P EL DLF TAPESPW EAPYKDAAE T
Sbjct: 344 APDQNMELTTEALEFLKGIFSLFDIDGDGALHPDELVDLFSTAPESPWIEAPYKDAAEKT 403

Query: 363 ALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGGDPAAALRVTRKRSVDRKKQQTERN 422
           ALG L+L GF+S+WAL+TLLDP  SL NLIY+GY GDP +A+RVTRKR +DRKKQQ++RN
Sbjct: 404 ALGGLSLDGFLSEWALLTLLDPVSSLENLIYIGYAGDPPSAMRVTRKRRLDRKKQQSDRN 463

Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
           VF+C +FGP+ AGKS LLN+FL RPFS++Y PT  E+YAVNVVDQPGG+KKTL+L+EI E
Sbjct: 464 VFQCFVFGPKEAGKSGLLNAFLGRPFSDSYNPTIDERYAVNVVDQPGGSKKTLVLREIAE 523

Query: 483 EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASK 542
           +GV+K+LS +++LA+CD+ +FVYDSSDE SWKR  ELLVEVA  GE++ Y VPCL++A+K
Sbjct: 524 DGVRKLLSKRDSLAACDIALFVYDSSDESSWKRATELLVEVASHGENTSYEVPCLIVAAK 583

Query: 543 DDLKPYTMAVQDSARVTQELGIEPPIPVSMKSKDLNNVFSRIIWAAEHPHLNIPETETGR 602
           DDL PY MA+ DS R+TQ++GIEPPIP+S K  D N +F RII AAEHPHL+IPETE GR
Sbjct: 584 DDLDPYPMAIHDSTRLTQDMGIEPPIPISAKLGDFNTIFRRIIAAAEHPHLSIPETEAGR 643

Query: 603 NRKRYRHLVNSSLVFVSVGAAVAVVGLAAYRAYAARRNSSS 643
           +RK+Y  L+N SL+ VSVGAAVA+VGLAAYR YAAR+++SS
Sbjct: 644 SRKQYSRLINRSLMVVSVGAAVAIVGLAAYRVYAARKSASS 684

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082628|ref|XP_002306771.1| predicted protein [Populus trichocarpa] gi|222856220|gb|EEE93767.1| predicted protein [Populus trichocarpa]

 Score =  992 bits (2564), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/645 (74%), Positives = 563/645 (87%), Gaps = 2/645 (0%)

Query: 1   MPGGSGSSS--RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDR 58
           MPGG+ +++  +TGVR+VVVGDRGTGKSSLIAAAATES PE + PV  PTRLP DF+PDR
Sbjct: 1   MPGGNSAAAGGKTGVRIVVVGDRGTGKSSLIAAAATESFPENLSPVLPPTRLPADFFPDR 60

Query: 59  VPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPI 118
           VP+TIIDTS+SLE++GKLNEELKRAD ++LTYAC+   TL+RLSS+WL E RRLE+KVP+
Sbjct: 61  VPITIIDTSASLESRGKLNEELKRADVIILTYACDFPLTLTRLSSFWLQEFRRLEVKVPV 120

Query: 119 IVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHP 178
           IV GCK+DLR ++   SLE VMGPIMQQ+REIETC+ECSA T++QVPDVFYYAQKAVLHP
Sbjct: 121 IVVGCKVDLRDENQPISLEPVMGPIMQQYREIETCIECSAVTLMQVPDVFYYAQKAVLHP 180

Query: 179 TAPLFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGV 238
           TAPLFD D Q L+PRC+RAL+RIFI+CD DMDGALNDAELN+FQVKCF+APLQPAEIVGV
Sbjct: 181 TAPLFDQDTQALQPRCIRALRRIFILCDSDMDGALNDAELNDFQVKCFDAPLQPAEIVGV 240

Query: 239 KRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPV 298
           +RVVQEK+ +GVNDLGLTL GFLFLH+LFI+KGRLETTWAVLRKFGYG+DL+LRDDFLP 
Sbjct: 241 RRVVQEKKKEGVNDLGLTLEGFLFLHSLFIDKGRLETTWAVLRKFGYGNDLKLRDDFLPA 300

Query: 299 PTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDA 358
           P+K +PDQSVEL  EAVEF+R +F L+D DN GA+RP EL++LF TAPE+PW EAPYKDA
Sbjct: 301 PSKDAPDQSVELTIEAVEFVRRVFRLFDTDNYGALRPTELDELFSTAPENPWGEAPYKDA 360

Query: 359 AETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGGDPAAALRVTRKRSVDRKKQQ 418
           AE T  GNLTLKGF+S+WALMT+LDPR SLANL+Y+GYGG+PA+AL VTR+RSVDRKKQQ
Sbjct: 361 AERTTQGNLTLKGFLSEWALMTMLDPRGSLANLLYIGYGGNPASALHVTRRRSVDRKKQQ 420

Query: 419 TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQ 478
           TERNVF CL+FGP+NAGKS LLNSFL RPFSE++    GE+YAVNVVDQ GGNKKTLIL+
Sbjct: 421 TERNVFHCLVFGPKNAGKSTLLNSFLGRPFSESHELIAGERYAVNVVDQHGGNKKTLILR 480

Query: 479 EIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLL 538
           EIPE+GVKK LSNKE+L+S DV +FV DSSDEYSWKR+ ELLVEVAR GE+SGYGVP L+
Sbjct: 481 EIPEDGVKKFLSNKESLSSSDVAVFVCDSSDEYSWKRSNELLVEVARHGEESGYGVPSLI 540

Query: 539 IASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSKDLNNVFSRIIWAAEHPHLNIPET 598
           IA+KDDL P+ M+VQ S RV QELGI   IP+S K  D+NNVF RI+ AAEHPHLNIPET
Sbjct: 541 IAAKDDLDPHPMSVQKSVRVCQELGIGASIPISSKLGDMNNVFCRILSAAEHPHLNIPET 600

Query: 599 ETGRNRKRYRHLVNSSLVFVSVGAAVAVVGLAAYRAYAARRNSSS 643
             GR RK++  LVN SL+F+SVGAA AV G+AA+RA++ RRNS S
Sbjct: 601 VAGRKRKQFHQLVNHSLLFMSVGAAFAVAGMAAFRAHSGRRNSPS 645

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559464|ref|XP_002520752.1| rac-GTP binding protein, putative [Ricinus communis] gi|223540137|gb|EEF41714.1| rac-GTP binding protein, putative [Ricinus communis]

 Score =  979 bits (2532), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 476/644 (73%), Positives = 554/644 (86%), Gaps = 1/644 (0%)

Query: 1   MPGG-SGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRV 59
           MPGG S +  + GVRVVV GDR TGKSSLIAAAATE+ PE VP V  PTRLP DF+PDR+
Sbjct: 1   MPGGNSITGGKVGVRVVVAGDRFTGKSSLIAAAATETYPENVPRVLPPTRLPADFFPDRI 60

Query: 60  PVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPII 119
           P+TIIDTS++LE++GKL EELKRAD VVLTY+C+Q  TLSRLSS+WL ELRRLE+KVP+I
Sbjct: 61  PITIIDTSAALESRGKLIEELKRADVVVLTYSCDQPLTLSRLSSFWLEELRRLEVKVPVI 120

Query: 120 VAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPT 179
           V GCKLDLR +    SLE+VMGPIMQQ REIETC+ECSA T++QVPDVF+YAQKAVLHPT
Sbjct: 121 VVGCKLDLRDEAYPVSLEQVMGPIMQQHREIETCIECSAVTLMQVPDVFFYAQKAVLHPT 180

Query: 180 APLFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVK 239
           APLFD +  TLKPRC RAL+RIF++CDHDMDGALND ELN FQVKCFNAPLQPAEIVGV+
Sbjct: 181 APLFDQEHHTLKPRCERALRRIFLLCDHDMDGALNDLELNNFQVKCFNAPLQPAEIVGVR 240

Query: 240 RVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVP 299
           RVVQEK+ DGVND+GLTL GFLFLH+LFI++GR+ETTW VLRKFGY D+L+LRDD LPVP
Sbjct: 241 RVVQEKKRDGVNDIGLTLEGFLFLHSLFIDRGRIETTWTVLRKFGYDDELKLRDDLLPVP 300

Query: 300 TKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAA 359
            K +PDQS+EL  E VEFLRGIF L+DIDN GA+RP+EL++LF TAPE+PW EAPYKDAA
Sbjct: 301 YKHAPDQSIELTIEVVEFLRGIFRLFDIDNHGALRPSELDELFSTAPENPWCEAPYKDAA 360

Query: 360 ETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGGDPAAALRVTRKRSVDRKKQQT 419
           E T   +LT KGF+S W LMTLL+P+ SLANLIYVGY G+PA+AL VTR+R+VDRKKQQT
Sbjct: 361 ERTMQRSLTFKGFLSGWDLMTLLNPKSSLANLIYVGYSGNPASALHVTRRRTVDRKKQQT 420

Query: 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQE 479
           ERNVF CL+FGP+NAGKSALLNSFL RPFSE++    GE +A NVVDQ GG KKTLIL+E
Sbjct: 421 ERNVFHCLVFGPKNAGKSALLNSFLGRPFSESFHLPIGEHFAANVVDQLGGIKKTLILRE 480

Query: 480 IPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLI 539
           +PE+GVKK LSNKE+LA+CDV +FVYD SDEYSWKR+ ELLVE+ R GE+SGYG+PCLLI
Sbjct: 481 VPEDGVKKYLSNKESLAACDVAVFVYDCSDEYSWKRSCELLVEIVRQGEESGYGMPCLLI 540

Query: 540 ASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSKDLNNVFSRIIWAAEHPHLNIPETE 599
           A+KDDL PY MAVQDS  V QELGIE PIPVS K  ++NNVF RI+ AA  PHLNIPETE
Sbjct: 541 AAKDDLDPYPMAVQDSVAVCQELGIEAPIPVSTKLGEMNNVFCRILSAAVRPHLNIPETE 600

Query: 600 TGRNRKRYRHLVNSSLVFVSVGAAVAVVGLAAYRAYAARRNSSS 643
           +GR RK +R LVN SL+F+SVGA +AVVGLAA+RAY+AR+NSS+
Sbjct: 601 SGRRRKVFRQLVNHSLIFMSVGAGLAVVGLAAFRAYSARKNSSN 644

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225436934|ref|XP_002275434.1| PREDICTED: mitochondrial Rho GTPase 1 [Vitis vinifera] gi|296086704|emb|CBI32339.3| unnamed protein product [Vitis vinifera]

 Score =  959 bits (2480), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/621 (73%), Positives = 531/621 (85%), Gaps = 1/621 (0%)

Query: 23  TGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKR 82
           TGKSSLI+ AATE+ PE V PV  PTRLP DFYPDRVPVTIIDTSSSLE++ KL EELKR
Sbjct: 20  TGKSSLISTAATETFPETVQPVLPPTRLPADFYPDRVPVTIIDTSSSLEHRAKLAEELKR 79

Query: 83  ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGP 142
           ADAVVLTY+C+  + LSR  ++WL ELRRLE++ P+IV GCKLDLR +    SLE+VM P
Sbjct: 80  ADAVVLTYSCDN-TNLSRPITFWLHELRRLEVRAPVIVVGCKLDLRDERQRISLEQVMSP 138

Query: 143 IMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIF 202
           IMQQFREIETC+ECSA + +QVPDVFYYAQKAVLHPTAPLFD + QTLKPRC+RALKRIF
Sbjct: 139 IMQQFREIETCIECSAASQVQVPDVFYYAQKAVLHPTAPLFDQETQTLKPRCIRALKRIF 198

Query: 203 IICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLF 262
           I+CD DMDGAL+DAELNEFQV+CFNAPLQPAEIVGVKRVVQEK  DGVN LGLTLSGFLF
Sbjct: 199 ILCDRDMDGALSDAELNEFQVQCFNAPLQPAEIVGVKRVVQEKLPDGVNHLGLTLSGFLF 258

Query: 263 LHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIF 322
           LHALFIEKGRLETTW VLRKFGY D ++L   FLP+P K +PDQSVEL SE++EFL+ +F
Sbjct: 259 LHALFIEKGRLETTWTVLRKFGYDDAIKLSGSFLPIPAKRAPDQSVELTSESLEFLKRVF 318

Query: 323 GLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLL 382
            L+DIDNDGA+R  +L+DLF TAPESPW EAPY+DAAE TA+G L+L GF+S+WALMTLL
Sbjct: 319 NLFDIDNDGALRHDDLDDLFSTAPESPWHEAPYRDAAERTAMGALSLNGFLSEWALMTLL 378

Query: 383 DPRHSLANLIYVGYGGDPAAALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNS 442
           DP  SLANLIY+GY GDP++ALR TR+RS+DRKK+QTERNVF+C++FGP+NAGKS+LL S
Sbjct: 379 DPASSLANLIYIGYAGDPSSALRATRRRSLDRKKRQTERNVFQCVVFGPKNAGKSSLLTS 438

Query: 443 FLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI 502
           FL RPFS NY  T  E+YA N +D+  G +KTLIL+EIPE+  KK LSNK++LA+CD  I
Sbjct: 439 FLGRPFSGNYTSTVDERYATNGIDELQGTRKTLILREIPEDRFKKFLSNKQSLAACDAAI 498

Query: 503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQEL 562
           FVYDSSDE SW+R  ELLVEVAR GE++G+GVPCLL+A+K DL P+ MA QDSA+V QE+
Sbjct: 499 FVYDSSDELSWRRATELLVEVARQGEETGFGVPCLLVAAKYDLDPFPMAAQDSAKVCQEM 558

Query: 563 GIEPPIPVSMKSKDLNNVFSRIIWAAEHPHLNIPETETGRNRKRYRHLVNSSLVFVSVGA 622
           GIE PIPVS+KS DLNN+F RII AAEHPHL+IPET+TGR  K+YR LVN SL+  SVGA
Sbjct: 559 GIESPIPVSVKSGDLNNLFCRIIRAAEHPHLSIPETQTGRKHKQYRQLVNHSLMLFSVGA 618

Query: 623 AVAVVGLAAYRAYAARRNSSS 643
           A+AVVGLAAYR YAAR+N+SS
Sbjct: 619 AIAVVGLAAYRTYAARKNTSS 639

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|150036254|gb|ABR67417.1| ATP/GTP/Ca++ binding protein [Cucumis melo subsp. melo]

 Score =  947 bits (2449), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 449/637 (70%), Positives = 539/637 (84%)

Query: 7   SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDT 66
           S  RT VR+V+ GDRGTGKSSLI  AA ++ P  VPPV  PTRLP DFYPDRVP TIIDT
Sbjct: 11  SGGRTEVRIVIAGDRGTGKSSLIVTAAADNFPVNVPPVLPPTRLPEDFYPDRVPTTIIDT 70

Query: 67  SSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLD 126
           SS  E+  K+ EELKRADAVVLTYAC+Q +TL RLS++WLP+LR+LE++VP+IV GCKLD
Sbjct: 71  SSRTEDSAKVAEELKRADAVVLTYACDQPNTLDRLSTFWLPKLRQLEVRVPVIVVGCKLD 130

Query: 127 LRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHD 186
           LR ++   SLE+VM PIMQQFREIETC+ECSA   IQ+P+VFYYAQKAVLHPT PLFD +
Sbjct: 131 LRDENQQVSLEQVMSPIMQQFREIETCIECSAFKHIQIPEVFYYAQKAVLHPTGPLFDQE 190

Query: 187 EQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQ 246
            QTLKPRCVRALKRIFI+CDHD DGAL+DAELN+FQVKCFNAPLQP+EIVGVKRVVQEK 
Sbjct: 191 TQTLKPRCVRALKRIFILCDHDKDGALSDAELNDFQVKCFNAPLQPSEIVGVKRVVQEKL 250

Query: 247 HDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQ 306
            +GVND GLTL+GFLFLHALFIEKGRLETTW VLRKFGY +D++L D+ +P   K +PDQ
Sbjct: 251 PEGVNDRGLTLTGFLFLHALFIEKGRLETTWTVLRKFGYDNDIKLSDELIPTLGKRAPDQ 310

Query: 307 SVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGN 366
           SVEL +EA+EFLRGIF LYD D DGA+RP +LE+LF TAPESPW+EAPYKD+AE  A+G 
Sbjct: 311 SVELTNEALEFLRGIFELYDGDGDGALRPRDLEELFSTAPESPWNEAPYKDSAERNAMGG 370

Query: 367 LTLKGFVSKWALMTLLDPRHSLANLIYVGYGGDPAAALRVTRKRSVDRKKQQTERNVFRC 426
           L++  F+S W+LMTLL+P +++ NLIY+GY GDPA+A+RVTRKR +DRKKQQ +RNV +C
Sbjct: 371 LSIDDFLSLWSLMTLLNPVYTIENLIYIGYSGDPASAVRVTRKRRLDRKKQQLDRNVLQC 430

Query: 427 LLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK 486
            +FGP+ AGKS+LL++FL RPFS  Y PTT E+YAVNVVDQP G KKTLIL+EIPE+GVK
Sbjct: 431 FVFGPKKAGKSSLLDAFLARPFSVTYTPTTEERYAVNVVDQPEGTKKTLILREIPEDGVK 490

Query: 487 KILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLK 546
           K+LS+KE+LA+CD+ +FV+DSSDE SWK+  +LLVEVA  GED+GY VPCL++A+KDDL 
Sbjct: 491 KLLSSKESLAACDIALFVHDSSDESSWKKATDLLVEVASHGEDTGYEVPCLIVAAKDDLD 550

Query: 547 PYTMAVQDSARVTQELGIEPPIPVSMKSKDLNNVFSRIIWAAEHPHLNIPETETGRNRKR 606
            + +A+QDS RV+Q++GIEPPIP+S K  D NNVF RI  AAEHPHL+IPETE GR+RK 
Sbjct: 551 SFPLAIQDSTRVSQDMGIEPPIPISTKLGDFNNVFRRITSAAEHPHLSIPETEAGRSRKH 610

Query: 607 YRHLVNSSLVFVSVGAAVAVVGLAAYRAYAARRNSSS 643
           Y  L+N SL+FVSVGAAV +VGLAAYR Y AR+NSSS
Sbjct: 611 YHKLINRSLMFVSVGAAVTIVGLAAYRVYLARKNSSS 647

Source: Cucumis melo subsp. melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462328|ref|XP_004148893.1| PREDICTED: LOW QUALITY PROTEIN: mitochondrial Rho GTPase 1-like [Cucumis sativus]

 Score =  942 bits (2436), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 449/634 (70%), Positives = 534/634 (84%), Gaps = 2/634 (0%)

Query: 10  RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSS 69
           R  VR+VV GDRGTGKSSLIAAAATES P+ VP V  PT LP DFY D VP+TIID+SSS
Sbjct: 8   RPSVRIVVAGDRGTGKSSLIAAAATESFPDNVPSVLPPTHLPADFYADGVPLTIIDSSSS 67

Query: 70  LENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRG 129
           ++NK KL EELKRADAV+LTYAC+Q  TL+RL+SYWL ELR+LE+K P+I+ GCKLDLR 
Sbjct: 68  MDNKSKLYEELKRADAVLLTYACDQPMTLNRLTSYWLNELRQLEVKAPVILVGCKLDLRD 127

Query: 130 DHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQT 189
           +H+  S+E+++ PIM+QFREIETC+ECSA T++QVP+VFYYAQ+AVLHPTAPLFD + Q+
Sbjct: 128 EHHPMSMEDIVAPIMKQFREIETCIECSAATLLQVPEVFYYAQRAVLHPTAPLFDLERQS 187

Query: 190 LKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDG 249
           LKPRC  AL+R+F +CD DMDGAL+D ELNEFQVKCFNAPLQPAEIVGVKR+VQE    G
Sbjct: 188 LKPRCKNALRRVFTLCDRDMDGALSDEELNEFQVKCFNAPLQPAEIVGVKRIVQENLPSG 247

Query: 250 VNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVE 309
           VND GLTL GFLFLHALFIEKGRLETTWAVLRKFGY DDL L  D+LPVP+K +PDQS+E
Sbjct: 248 VNDRGLTLPGFLFLHALFIEKGRLETTWAVLRKFGYDDDLNLSGDYLPVPSKQAPDQSME 307

Query: 310 LASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTL 369
           L++EA++FLRG+F L D DNDGA+RP ELE+LF TAPESPWDE PYKD+AE TALGNLTL
Sbjct: 308 LSNEALDFLRGVFQLLDTDNDGALRPTELEELFSTAPESPWDEPPYKDSAERTALGNLTL 367

Query: 370 KGFVSKWALMTLLDPRHSLANLIYVGYGGDPAAALRVTRKRSVDRKKQQTERNVFRCLLF 429
            GF+S+WALMT+LDP  SLANLIY+GYGGDPA ALRVTR+R VDRKKQ+TERNVF+C +F
Sbjct: 368 NGFLSQWALMTILDPPRSLANLIYIGYGGDPAKALRVTRRRLVDRKKQKTERNVFQCFVF 427

Query: 430 GPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKIL 489
           GP+ AGKSA+LN+ + R    N    T + Y +N++++  G +KTLIL+EIPE+GV K L
Sbjct: 428 GPKKAGKSAILNTLIRRSHLNNXRWLTEDGYVMNMLER--GGQKTLILREIPEDGVHKFL 485

Query: 490 SNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT 549
           SN+E LA CDV +FVYDSSDE SW R++ELLVEVAR GE SG+GVPC++ A+KDDL P  
Sbjct: 486 SNEECLAGCDVAVFVYDSSDEDSWNRSRELLVEVARKGEVSGFGVPCIVTAAKDDLDPSP 545

Query: 550 MAVQDSARVTQELGIEPPIPVSMKSKDLNNVFSRIIWAAEHPHLNIPETETGRNRKRYRH 609
           +AVQDS RV Q LGIE PIPVS KS DL+N+F++I+ AAEHPH NIPETE GRNRKRY  
Sbjct: 546 LAVQDSVRVCQGLGIEAPIPVSSKSGDLSNIFNKILTAAEHPHANIPETERGRNRKRYYK 605

Query: 610 LVNSSLVFVSVGAAVAVVGLAAYRAYAARRNSSS 643
           L N SL+FVSVGAAV V+GLAA RAYAAR+N+S+
Sbjct: 606 LFNRSLIFVSVGAAVGVIGLAACRAYAARKNTSN 639

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442827|ref|XP_004139182.1| PREDICTED: mitochondrial Rho GTPase 1-like [Cucumis sativus]

 Score =  942 bits (2434), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 448/637 (70%), Positives = 537/637 (84%)

Query: 7   SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDT 66
           S  RT VR+V+ GDRGTGKSSLI  AA ++ P  VPPV  PTRLP DFYPDRVP TIIDT
Sbjct: 11  SRGRTEVRIVIAGDRGTGKSSLIVTAAADNFPVNVPPVLPPTRLPEDFYPDRVPTTIIDT 70

Query: 67  SSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLD 126
           SS  E+  K+ EELKRADAVVLTYAC+Q +TL RLS++WLP+LR+LE++VP+IV GCKLD
Sbjct: 71  SSRTEDSAKVAEELKRADAVVLTYACDQPNTLDRLSTFWLPKLRQLEVRVPVIVVGCKLD 130

Query: 127 LRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHD 186
           LR +    SLE+VM PIMQQFREIETC+ECSA   IQ+P+VFYYAQKAVLHPT PLFD +
Sbjct: 131 LRDEDQQVSLEQVMSPIMQQFREIETCIECSAFKHIQIPEVFYYAQKAVLHPTGPLFDQE 190

Query: 187 EQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQ 246
            QTLKPRCVRALKRIFI+CDHD DGAL+DAELN+FQVKCFNAPLQP+EIVGVKRVVQEK 
Sbjct: 191 TQTLKPRCVRALKRIFILCDHDKDGALSDAELNDFQVKCFNAPLQPSEIVGVKRVVQEKL 250

Query: 247 HDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQ 306
            +GVND GLTL+GFLFLHALFIEKGRLETTW VLRKFGY +D++L D+ +P   K +PDQ
Sbjct: 251 PEGVNDHGLTLTGFLFLHALFIEKGRLETTWTVLRKFGYDNDIKLSDELIPTLGKRAPDQ 310

Query: 307 SVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGN 366
           SVEL +EA+EFLRGIF LYD D DGA+RP +LE+LF TAPESPW+E+PYKD+AE  A+G 
Sbjct: 311 SVELTNEALEFLRGIFELYDGDGDGALRPRDLEELFSTAPESPWNESPYKDSAERNAMGG 370

Query: 367 LTLKGFVSKWALMTLLDPRHSLANLIYVGYGGDPAAALRVTRKRSVDRKKQQTERNVFRC 426
           L++  F+S W+LMTLL+P +++ NLIY+GY GDPA+A+RVTRKR +DRKKQQ +RNV +C
Sbjct: 371 LSIDDFLSLWSLMTLLNPVYTIENLIYIGYPGDPASAVRVTRKRRLDRKKQQLDRNVLQC 430

Query: 427 LLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK 486
            +FGP+ AGKS+LL++FL RPFS  Y PTT E+YAVNVVDQP G KKTLIL+EIPE+GVK
Sbjct: 431 FVFGPKKAGKSSLLDAFLARPFSVTYTPTTEERYAVNVVDQPEGTKKTLILREIPEDGVK 490

Query: 487 KILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLK 546
           K+LS+KE+LA+CD+ +FV+DSSDE SWK+  +LLVEVA  GED+GY VPCL++A+KDDL 
Sbjct: 491 KLLSSKESLAACDIALFVHDSSDESSWKKATDLLVEVASHGEDTGYEVPCLIVAAKDDLD 550

Query: 547 PYTMAVQDSARVTQELGIEPPIPVSMKSKDLNNVFSRIIWAAEHPHLNIPETETGRNRKR 606
            + +A+QDS RV+Q++GIEPPIP+S K  D NNVF RI  AAEHPHL+IPETE GR+RK 
Sbjct: 551 SFPLAIQDSTRVSQDMGIEPPIPISTKLGDFNNVFRRITSAAEHPHLSIPETEAGRSRKH 610

Query: 607 YRHLVNSSLVFVSVGAAVAVVGLAAYRAYAARRNSSS 643
           Y  L N SL+FVSVGAAV +VGLAAYR Y AR+NSSS
Sbjct: 611 YHKLKNHSLMFVSVGAAVTIVGLAAYRVYLARKNSSS 647

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449482860|ref|XP_004156425.1| PREDICTED: mitochondrial Rho GTPase 1-like [Cucumis sativus]

 Score =  938 bits (2424), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 448/638 (70%), Positives = 538/638 (84%), Gaps = 1/638 (0%)

Query: 7   SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDT 66
           S  RT VR+V+ GDRGTGKSSLI  AA ++ P  VPPV  PTRLP DFYPDRVP TIIDT
Sbjct: 11  SRGRTEVRIVIAGDRGTGKSSLIVTAAADNFPVNVPPVLPPTRLPEDFYPDRVPTTIIDT 70

Query: 67  SSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLD 126
           SS  E+  K+ EELKRADAVVLTYAC+Q +TL RLS++WLP+LR+LE++VP+IV GCKLD
Sbjct: 71  SSRTEDSAKVAEELKRADAVVLTYACDQPNTLDRLSTFWLPKLRQLEVRVPVIVVGCKLD 130

Query: 127 LRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHD 186
           LR +    SLE+VM PIMQQFREIETC+ECSA   IQ+P+VFYYAQKAVLHPT PLFD +
Sbjct: 131 LRDEDQQVSLEQVMSPIMQQFREIETCIECSAFKHIQIPEVFYYAQKAVLHPTGPLFDQE 190

Query: 187 EQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQ 246
            QTLKPRCVRALKRIFI+CDHD DGAL+DAELN+FQVKCFNAPLQP+EIVGVKRVVQEK 
Sbjct: 191 TQTLKPRCVRALKRIFILCDHDKDGALSDAELNDFQVKCFNAPLQPSEIVGVKRVVQEKL 250

Query: 247 HDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQ 306
            +GVND GLTL+GFLFLHALFIEKGRLETTW VLRKFGY +D++L D+ +P   K +PDQ
Sbjct: 251 PEGVNDHGLTLTGFLFLHALFIEKGRLETTWTVLRKFGYDNDIKLSDELIPTLGKRAPDQ 310

Query: 307 SVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGN 366
           SVEL +EA+EFLRGIF LYD D DGA+RP +LE+LF TAPESPW+E+PYKD+AE  A+G 
Sbjct: 311 SVELTNEALEFLRGIFELYDGDGDGALRPRDLEELFSTAPESPWNESPYKDSAERNAMGG 370

Query: 367 LTLKGFVSKWALMTLLDPRHSLANLIYVGYGGDPAAALRVTRKRSVDRKKQQTERNVFRC 426
           L++  F+S W+LMTLL+P +++ NLIY+GY GDPA+A+RVTRKR +DRKKQQ +RNV +C
Sbjct: 371 LSIDDFLSLWSLMTLLNPVYTIENLIYIGYPGDPASAVRVTRKRRLDRKKQQLDRNVLQC 430

Query: 427 LLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPG-GNKKTLILQEIPEEGV 485
            +FGP+ AGKS+LL++FL RPFS  Y PTT E+YAVNVVDQP   NKKTLIL+EIPE+GV
Sbjct: 431 FVFGPKKAGKSSLLDAFLARPFSVTYTPTTEERYAVNVVDQPEVRNKKTLILREIPEDGV 490

Query: 486 KKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDL 545
           KK+LS+KE+LA+CD+ +FV+DSSDE SWK+  +LLVEVA  GED+GY VPCL++A+KDDL
Sbjct: 491 KKLLSSKESLAACDIALFVHDSSDESSWKKATDLLVEVASHGEDTGYEVPCLIVAAKDDL 550

Query: 546 KPYTMAVQDSARVTQELGIEPPIPVSMKSKDLNNVFSRIIWAAEHPHLNIPETETGRNRK 605
             + +A+QDS RV+Q++GIEPPIP+S K  D NNVF RI  AAEHPHL+IPETE GR+RK
Sbjct: 551 DSFPLAIQDSTRVSQDMGIEPPIPISTKLGDFNNVFRRITSAAEHPHLSIPETEAGRSRK 610

Query: 606 RYRHLVNSSLVFVSVGAAVAVVGLAAYRAYAARRNSSS 643
            Y  L+N SL+FVSVGAAV +VGLAAYR Y AR+NSSS
Sbjct: 611 HYHKLINRSLMFVSVGAAVTIVGLAAYRVYLARKNSSS 648

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125274|ref|XP_002319545.1| predicted protein [Populus trichocarpa] gi|222857921|gb|EEE95468.1| predicted protein [Populus trichocarpa]

 Score =  932 bits (2409), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/639 (69%), Positives = 535/639 (83%), Gaps = 7/639 (1%)

Query: 10  RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSS 69
           ++GVR+VV GDRGTGKSSLI  A +++ P  +PPV  PTR+P DFYPDRVP+TIIDTSS 
Sbjct: 13  KSGVRIVVAGDRGTGKSSLIVTAISDTFPSSIPPVLPPTRMPDDFYPDRVPITIIDTSSK 72

Query: 70  LENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRG 129
           +E+ GK+ EELKRADAVVLTYAC++  TL RLS++WLPELR+LE+KVP+IV GCKLDLR 
Sbjct: 73  VEDAGKVAEELKRADAVVLTYACDRPETLDRLSTFWLPELRQLEVKVPVIVVGCKLDLRD 132

Query: 130 DHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQT 189
           ++   SLE+VM PIMQQFREIETC+ECSA   IQ+P+VFYYAQKAVLHPT PLFD + QT
Sbjct: 133 ENQQVSLEQVMSPIMQQFREIETCIECSAFKHIQIPEVFYYAQKAVLHPTGPLFDQESQT 192

Query: 190 LKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEK---- 245
           LKPRCVRALKRIFI+CD D DGAL+DAELNEFQVKCFNAPLQP+EIVGVK+VV+EK    
Sbjct: 193 LKPRCVRALKRIFILCDLDRDGALSDAELNEFQVKCFNAPLQPSEIVGVKKVVEEKLPGG 252

Query: 246 --QHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLS 303
                GVN+ GLTL+GFLFLHALFIEKGRLETTW VLRKFGY +D++L D+ +P   K +
Sbjct: 253 GVNDRGVNERGLTLTGFLFLHALFIEKGRLETTWTVLRKFGYNNDIKLTDELIP-SFKRA 311

Query: 304 PDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTA 363
           PDQS EL SEAVE+LR I+ L+D D D  +RPAELED+F TAPESPWDE PYKDAAE TA
Sbjct: 312 PDQSAELTSEAVEYLRNIYELFDSDGDNNLRPAELEDIFSTAPESPWDEPPYKDAAEKTA 371

Query: 364 LGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGGDPAAALRVTRKRSVDRKKQQTERNV 423
           L  L++  F+S+WALMTLLDP  ++ NLIY+GY GDP AA+R+TR+R +DRKKQQ++RNV
Sbjct: 372 LSGLSVNAFLSEWALMTLLDPSRAVENLIYIGYSGDPTAAVRLTRRRRLDRKKQQSDRNV 431

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
           F C +FGP+ +GKSAL+NSF+ RPF +NYAPTT E YAV+VVD PGG KKTL+L+EIPE+
Sbjct: 432 FHCFVFGPKKSGKSALVNSFIGRPFYDNYAPTTEESYAVHVVDLPGGIKKTLVLREIPED 491

Query: 484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKD 543
           GVKK+L NKE+LA CD+ +FVYDSSD+ SWKR  ELLVEVA  GED+GY VPCL++A+KD
Sbjct: 492 GVKKLLLNKESLAPCDIAVFVYDSSDQSSWKRATELLVEVAGHGEDTGYEVPCLIVAAKD 551

Query: 544 DLKPYTMAVQDSARVTQELGIEPPIPVSMKSKDLNNVFSRIIWAAEHPHLNIPETETGRN 603
           DL  + MA+Q+S RV+Q++GIE PIP+S K  D NNVF RI+ AAEHPHL+IPETE GR+
Sbjct: 552 DLNSFPMAIQESTRVSQDMGIEAPIPISSKMGDTNNVFRRIVTAAEHPHLSIPETEAGRS 611

Query: 604 RKRYRHLVNSSLVFVSVGAAVAVVGLAAYRAYAARRNSS 642
           RK+Y  LVN SL+FVSVGA VA+VGLAAYR YAARRNSS
Sbjct: 612 RKQYNRLVNRSLMFVSVGATVAIVGLAAYRVYAARRNSS 650

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	643
TAIR|locus:2099232	643	MIRO2 "MIRO-related GTP-ase 2"	0.914	0.914	0.663	9.1e-219
TAIR|locus:2146385	648	MIRO1 "MIRO-related GTP-ase 1"	0.912	0.905	0.648	1.4e-213
TAIR|locus:2096224	648	MIRO3 "MIRO-related GTP-ase 3"	0.900	0.893	0.513	5.9e-160
UNIPROTKB|Q5ZM83	618	RHOT2 "Mitochondrial Rho GTPas	0.867	0.902	0.408	1.6e-104
UNIPROTKB|F1NSQ4	618	RHOT1 "Mitochondrial Rho GTPas	0.858	0.893	0.399	3.7e-103
UNIPROTKB|G1K237	631	RHOT1 "Mitochondrial Rho GTPas	0.855	0.871	0.398	3.7e-103
UNIPROTKB|J9NUJ0	720	RHOT1 "Mitochondrial Rho GTPas	0.858	0.766	0.396	3.7e-103
UNIPROTKB|Q2HJF8	631	RHOT1 "Mitochondrial Rho GTPas	0.855	0.871	0.398	6e-103
UNIPROTKB|J9JIH9	659	RHOT1 "Mitochondrial Rho GTPas	0.858	0.837	0.395	9.8e-103
UNIPROTKB|Q8IXI2	618	RHOT1 "Mitochondrial Rho GTPas	0.855	0.889	0.396	9.8e-103

TAIR|locus:2099232 MIRO2 "MIRO-related GTP-ase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 2113 (748.9 bits), Expect = 9.1e-219, P = 9.1e-219
 Identities = 390/588 (66%), Positives = 485/588 (82%)

Query:    25 KSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRAD 84
             KSSLI+A A+E+ P+ VP V  P  LP D +PD +P+TI+DT SS++N+ KL EE ++AD
Sbjct:    27 KSSLISAVASETFPDNVPRVLPPITLPADAFPDYIPITIVDTPSSIDNRIKLIEEFRKAD 86

Query:    85 AVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIM 144
              V+LTYAC+Q STL RLSSYWLPELRRLEIK P+IV GCKLDLR + +   LE++M PIM
Sbjct:    87 VVLLTYACDQPSTLDRLSSYWLPELRRLEIKAPVIVVGCKLDLRDERSPARLEDIMSPIM 146

Query:   145 QQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFII 204
             +++REIETC+ECSA T+IQVPDVFY+A KAVLHPT PLFD ++Q LKPR  RA++RIF +
Sbjct:   147 KEYREIETCIECSALTLIQVPDVFYFASKAVLHPTFPLFDQEKQCLKPRLRRAVQRIFNL 206

Query:   205 CDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLH 264
             CDHD+DGALNDAELN+FQV CF APL P E++GVK+VVQE+Q DGV DLGLTL GFLFL 
Sbjct:   207 CDHDLDGALNDAELNDFQVNCFGAPLDPVELMGVKKVVQERQPDGVTDLGLTLPGFLFLF 266

Query:   265 ALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGL 324
             +LFIE+GR ET WA+LRK GY D LEL  + LPVP K SPDQS+EL +EA++FL GIF L
Sbjct:   267 SLFIERGRPETAWAILRKCGYNDSLELHAELLPVPAKQSPDQSIELTNEAMDFLSGIFQL 326

Query:   325 YDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDP 384
             YD+DNDGA++PAEL+DLF TAP+SPW E PYK+AAE T  G+LT+ GF+S+WALMTLLDP
Sbjct:   327 YDLDNDGALQPAELDDLFQTAPDSPWLEDPYKEAAEKTPGGSLTINGFLSEWALMTLLDP 386

Query:   385 RHSLANLIYVGYGGDPAAALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFL 444
             R SLANL Y+GYG DPA+   VTRKRSVDRKKQ+TERNVF+C +FGP+ +GKSALL+SFL
Sbjct:   387 RKSLANLTYIGYGHDPASTFSVTRKRSVDRKKQRTERNVFQCFVFGPKKSGKSALLDSFL 446

Query:   445 ERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV 504
              R FS +Y  T GE+YA NV+DQPGG+KKTLIL+EIPE+ VKK L+NKE+LA+CDV + V
Sbjct:   447 GRKFSNSYKATMGERYAANVIDQPGGSKKTLILREIPEDRVKKFLTNKESLAACDVAVVV 506

Query:   505 YDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGI 564
             YDSSD YSW++ +E+L+EVAR GE+ GYG PCLL+A+KDDL PY M+VQ+S RV  ELGI
Sbjct:   507 YDSSDVYSWRKAREILMEVARRGEERGYGTPCLLVAAKDDLDPYPMSVQESDRVCMELGI 566

Query:   565 EPPIPVSMKSKDLNNVFSRIIWAAEHPHLNIPETETGRNRKRYRHLVN 612
             + P+ +SMK  + N++FSRI+  AE+PH++IPETE+GR  +  R LVN
Sbjct:   567 DIPVSLSMKLGEPNSLFSRIVSTAENPHMSIPETESGRRSRNIRQLVN 614

GO:0003924 "GTPase activity" evidence=IEA;IDA

GO:0005509 "calcium ion binding" evidence=IEA;IDA

GO:0005525 "GTP binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0019725 "cellular homeostasis" evidence=IEA

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2146385 MIRO1 "MIRO-related GTP-ase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 2064 (731.6 bits), Expect = 1.4e-213, P = 1.4e-213
 Identities = 382/589 (64%), Positives = 477/589 (80%)

Query:    25 KSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRAD 84
             KSSLI AAAT+S P  VPPV    +LP +F+PD +PVTI+DTSS  E++  + EELKRAD
Sbjct:    30 KSSLIVAAATDSFPPNVPPVLPDYKLPIEFFPDGIPVTIVDTSSRPEDRDIVAEELKRAD 89

Query:    85 AVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIM 144
             AVVLTYAC++  TL RLS YWLPELRRLE+K+PIIVAGCKLD R D+N  SLE+VM PIM
Sbjct:    90 AVVLTYACDRPETLERLSEYWLPELRRLEVKIPIIVAGCKLDFRDDNNQVSLEQVMSPIM 149

Query:   145 QQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFII 204
             QQFREIETC+ECSA   +Q  +VFYYAQK VLHPT PLFD D Q LKPRCVRALKRIFI+
Sbjct:   150 QQFREIETCIECSALKQLQAQEVFYYAQKTVLHPTGPLFDQDSQALKPRCVRALKRIFIL 209

Query:   205 CDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLH 264
             CDHD DGAL++AELN+FQVKCF+APLQP+EI GVKRVVQEK  +GVN+ GLT++GFLFLH
Sbjct:   210 CDHDRDGALSEAELNDFQVKCFHAPLQPSEIEGVKRVVQEKLPEGVNERGLTVTGFLFLH 269

Query:   265 ALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPT-KLSPDQSVELASEAVEFLRGIFG 323
             ALFIEKGRLETTW VLRKFGY +D+ L ++ LP    K +PDQS EL + A++FL+G++ 
Sbjct:   270 ALFIEKGRLETTWTVLRKFGYNNDIRLAEELLPSAIFKRAPDQSFELTNAAIDFLKGMYM 329

Query:   324 LYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLD 383
             L+D D D  +RP E+EDLF TAPESPW EAPY+DAAE TALG L+   F+S W+LMTLL+
Sbjct:   330 LFDDDQDNNLRPQEIEDLFSTAPESPWKEAPYEDAAEKTALGGLSFDAFLSMWSLMTLLE 389

Query:   384 PRHSLANLIYVGYGGDPAAALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSF 443
             P  S+ NLIY+G+ GDP+ A+RVTR+R +DRKKQQ ER VF+C +FGP NAGKSALLN F
Sbjct:   390 PARSVENLIYIGFPGDPSTAIRVTRRRRLDRKKQQCERKVFQCFVFGPNNAGKSALLNCF 449

Query:   444 LERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503
             L R +++N   TT E+YAVN+VD+ G  KKTLI++EIPE+GV+ + S+KE+LA+CD+ +F
Sbjct:   450 LGRSYTDNQESTTDERYAVNMVDESGA-KKTLIMREIPEDGVQGLFSSKESLAACDIAVF 508

Query:   504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELG 563
             VYDSSDE SWKR  +LLVEVA  GE +GY VPCL++++KDDL    +++Q+S R+TQ++G
Sbjct:   509 VYDSSDESSWKRATQLLVEVANYGEATGYEVPCLMVSAKDDLDSSPISIQESTRMTQDMG 568

Query:   564 IEPPIPVSMKSKDLNNVFSRIIWAAEHPHLNIPETETGRNRKRYRHLVN 612
             IEPP+ +S K  D NN+F +I+ AA+HPHL+IPETE G++RK Y  L+N
Sbjct:   569 IEPPVSISSKLGDFNNLFRKILTAAQHPHLSIPETEAGKSRKHYNRLIN 617

GO:0003924 "GTPase activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA;NAS

GO:0019725 "cellular homeostasis" evidence=IEA

GO:0007005 "mitochondrion organization" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0009860 "pollen tube growth" evidence=IMP

GO:0005829 "cytosol" evidence=RCA

GO:0000003 "reproduction" evidence=RCA

GO:0000741 "karyogamy" evidence=RCA

GO:0006312 "mitotic recombination" evidence=RCA

GO:0006325 "chromatin organization" evidence=RCA

GO:0006626 "protein targeting to mitochondrion" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009845 "seed germination" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009933 "meristem structural organization" evidence=RCA

GO:0010090 "trichome morphogenesis" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010182 "sugar mediated signaling pathway" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0010638 "positive regulation of organelle organization" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0019915 "lipid storage" evidence=RCA

GO:0030048 "actin filament-based movement" evidence=RCA

GO:0033044 "regulation of chromosome organization" evidence=RCA

GO:0048825 "cotyledon development" evidence=RCA

GO:0050826 "response to freezing" evidence=RCA

GO:0051301 "cell division" evidence=RCA

GO:0051604 "protein maturation" evidence=RCA

GO:0051645 "Golgi localization" evidence=RCA

GO:0051646 "mitochondrion localization" evidence=RCA

GO:0060151 "peroxisome localization" evidence=RCA

TAIR|locus:2096224 MIRO3 "MIRO-related GTP-ase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1558 (553.5 bits), Expect = 5.9e-160, P = 5.9e-160
 Identities = 302/588 (51%), Positives = 419/588 (71%)

Query:    25 KSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRAD 84
             KSSLI AAA  +    +P +   T LP +F+PDR+P T+IDTSS  E+KGK+ +E+++AD
Sbjct:    27 KSSLIMAAARNTFHPNIPSLLPYTNLPSEFFPDRIPATVIDTSSRPEDKGKVVKEVRQAD 86

Query:    85 AVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIM 144
             A+VLT+A ++  TL RLS YWLP  R+LE++VPIIVAG ++D +  +N  S+E++   +M
Sbjct:    87 AIVLTFAFDRPETLDRLSKYWLPLFRQLEVRVPIIVAGYEVDNKEAYNHFSIEQITSALM 146

Query:   145 QQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFII 204
             +Q+RE+ET ++ SA  + Q  DV YYAQKAV+ P  P+FD +   LKPRC+ ALKRIF++
Sbjct:   147 KQYREVETSIQWSAQRLDQAKDVLYYAQKAVIDPVGPVFDQENNVLKPRCIAALKRIFLL 206

Query:   205 CDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLH 264
              DH+MDG L+D ELNE Q KCF+ PL P EI  +K V+Q     GVN+ GLTL GFLFL+
Sbjct:   207 SDHNMDGILSDEELNELQKKCFDTPLVPCEIKQMKNVMQVTFPQGVNERGLTLDGFLFLN 266

Query:   265 ALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPT-KLSPDQSVELASEAVEFLRGIFG 323
                IE+ R++T W +LRKFGY +DL L DD +P  + K   DQSVEL + A+EFLR ++ 
Sbjct:   267 TRLIEEARIQTLWTMLRKFGYSNDLRLGDDLVPYSSFKRQADQSVELTNVAIEFLREVYE 326

Query:   324 LYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLD 383
              +D + D  + P E+  LF TAPESPW +  YKD  E    G L+L+ F+S W+LMTL+D
Sbjct:   327 FFDSNGDNNLEPHEMGYLFETAPESPWTKPLYKDVTEENMDGGLSLEAFLSLWSLMTLID 386

Query:   384 PRHSLANLIYVGY-GGDPAAALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNS 442
             P  SL  L+Y+ +   DP++A+RVTRKR +DRK++++ER V +C +FGP+NAGKSALLN 
Sbjct:   387 PPRSLEYLMYIRFPSDDPSSAVRVTRKRVLDRKEKKSERKVVQCFVFGPKNAGKSALLNQ 446

Query:   443 FLERPF---SENYAPTTGEQYAVNVVDQPG---GNKKTLILQEIPEEGVKKILSNKEALA 496
             F+ R +   S N   +T E YAVN+V +PG      KTL+L+E+  +    +LS KEALA
Sbjct:   447 FIGRSYDDDSNNNNGSTDEHYAVNMVKEPGVISDTDKTLVLKEVRIKDDGFMLS-KEALA 505

Query:   497 SCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSA 556
             +CDV IF+YDSSDEYSW R  ++L EVA + +DSGY  PCL++A+K DL P+ +A+Q+S 
Sbjct:   506 ACDVAIFIYDSSDEYSWNRAVDMLAEVATIAKDSGYVFPCLMVAAKTDLDPFPVAIQEST 565

Query:   557 RVTQELGIEPPIPVSMKSKDLNNVFSRIIWAAEHPHLNIPETETGRNR 604
             RVTQ++GI+ PIP+S K  D++N+F +I+ AAE+PHLNIPE E+ + R
Sbjct:   566 RVTQDIGIDAPIPISSKLGDVSNLFRKILTAAENPHLNIPEIESKKKR 613

GO:0003924 "GTPase activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0019725 "cellular homeostasis" evidence=IEA

GO:0030048 "actin filament-based movement" evidence=RCA

GO:0051645 "Golgi localization" evidence=RCA

GO:0051646 "mitochondrion localization" evidence=RCA

GO:0060151 "peroxisome localization" evidence=RCA

UNIPROTKB|Q5ZM83 RHOT2 "Mitochondrial Rho GTPase 2" [Gallus gallus (taxid:9031)]

 Score = 1035 (369.4 bits), Expect = 1.6e-104, P = 1.6e-104
 Identities = 239/585 (40%), Positives = 335/585 (57%)

Query:    25 KSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRAD 84
             K+SLI A   E  PE+VPP      +P D  P++VP  I+D S S + + +L EE+ +A+
Sbjct:    17 KTSLIMALVGEEFPEEVPPRAEEITIPADVTPEKVPTHIVDYSESEQTEDELQEEIAKAN 76

Query:    85 AVVLTYACNQQSTLSRLSSYWLPELR---RLEIKVPIIVAGCKLDLRGDHNATSLEEVMG 141
              V + Y   +++T+ ++ + W+P +        ++PII+ G K DL+     +S+E ++ 
Sbjct:    77 VVCVVYDVTKEATIEKIRTKWIPMVNGGAEKGARIPIILVGNKSDLQ---MGSSMEVIL- 132

Query:   142 PIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRI 201
             PIM QF EIETCVECSA  +  + ++FYYAQKAVLHPTAPL+D +E+ L+P C RAL RI
Sbjct:   133 PIMNQFSEIETCVECSAKNLKNISELFYYAQKAVLHPTAPLYDPEEKQLRPACSRALTRI 192

Query:   202 FIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFL 261
             F + D D +  L+D ELN FQ  CF  PL P  +  VK VV +   DGV D GLTL+GFL
Sbjct:   193 FNLSDQDNNQILSDDELNYFQKSCFGNPLAPQALEDVKMVVWKNTTDGVQDNGLTLNGFL 252

Query:   262 FLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGI 321
             FL+ LFI++GR ETTW +LR+FGY D+LEL DD+L    +L P  S EL     +FL+ +
Sbjct:   253 FLNTLFIQRGRHETTWTILRRFGYDDELELTDDYLYPQFRLPPGCSTELNHLGYQFLQRL 312

Query:   322 FGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTL 381
             F  +D D DGA+ PAEL++ F   P  PW    Y     TT  G L+L GF+ +W L+  
Sbjct:   313 FEKHDKDQDGALSPAELQNFFSVFPCMPWGPELYNTVC-TTDKGLLSLHGFLCQWTLIAY 371

Query:   382 LDPRHSLANLIYVGYG-----GDPAAALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGK 436
             LD RH L  L Y+GY           AL VTR++ +D +K QT+RNVF C + G + AGK
Sbjct:   372 LDVRHCLECLGYLGYPILSEQDSQTQALTVTREKRIDLEKGQTQRNVFLCKVLGARGAGK 431

Query:   437 SALLNSFLERPFS-ENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEAL 495
             SA L +FL R  + +  +P     Y +N V Q  G +K LIL E+  E        K + 
Sbjct:   432 SAFLQAFLGRSLAAQRESPGEPSPYTINTV-QVNGQEKYLILHEVSAE----TQFTKPSD 486

Query:   496 ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDS 555
             A+CDV   +YD SD  S+     +  +      DS   +PC+ +ASK DL   +     S
Sbjct:   487 AACDVACLIYDLSDPKSFSYCASIYKQHYM---DSQ--IPCVFVASKTDLPEASQQPGLS 541

Query:   556 -ARVTQELGIEPPIPVSMKSKDLNN--VFSRIIWAAEHPHLNIPE 597
              A    +  + PP   S  S+      +++++  AA  PHLN  E
Sbjct:   542 PAEFCYKHCLPPPFLFSCHSQGPPGTAIYTKLATAATFPHLNAVE 586

GO:0003924 "GTPase activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0006915 "apoptotic process" evidence=ISS

GO:0019725 "cellular homeostasis" evidence=ISS

GO:0031307 "integral to mitochondrial outer membrane" evidence=ISS

GO:0047497 "mitochondrion transport along microtubule" evidence=ISS

UNIPROTKB|F1NSQ4 RHOT1 "Mitochondrial Rho GTPase" [Gallus gallus (taxid:9031)]

 Score = 1022 (364.8 bits), Expect = 3.7e-103, P = 3.7e-103
 Identities = 233/583 (39%), Positives = 340/583 (58%)

Query:    25 KSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRAD 84
             K+SLI +  +E  PE+VPP      +P D  P+RVP  I+D S + +N  +L  E+ +A+
Sbjct:    17 KTSLIMSLVSEEFPEEVPPRAEEITIPADVTPERVPTHIVDYSEAEQNDEQLYHEISQAN 76

Query:    85 AVVLTYACNQQSTLSRLSSYWLP---ELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMG 141
              + + YA N ++++ +++S W+P   E    + ++P+I+ G K DL      +S+E ++ 
Sbjct:    77 VICIVYAVNNKNSIDKVTSRWIPLINERTDKDSRLPLILVGNKSDLV---EYSSMETIL- 132

Query:   142 PIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRI 201
             PIM Q+ EIETCVECSA  +  + ++FYYAQKAVLHPT PL+  +E+ +KP C++AL RI
Sbjct:   133 PIMNQYTEIETCVECSAKNLKNISELFYYAQKAVLHPTGPLYCPEEKEMKPACIKALTRI 192

Query:   202 FIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFL 261
             F I D D DG LNDAELN FQ  CFN PL P  +  VK VV++   DGV D GLTL GFL
Sbjct:   193 FRISDQDNDGTLNDAELNFFQRICFNTPLAPQALEDVKNVVRKNVSDGVADNGLTLKGFL 252

Query:   262 FLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGI 321
             FLH LFI++GR ETTW VLR+FGY DDLEL  ++L    K+ PD + EL   A  FL+ I
Sbjct:   253 FLHTLFIQRGRHETTWTVLRRFGYDDDLELTPEYLFPLLKIPPDCTTELNHHAYLFLQSI 312

Query:   322 FGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTL 381
             F  +D+D D A+ P EL+DLF   P  PW      +   T   G +T +GF+S+W L T 
Sbjct:   313 FDKHDLDRDCALSPDELKDLFKVFPYMPWGP-DVNNTVCTNERGWITYQGFLSQWTLTTY 371

Query:   382 LDPRHSLANLIYVGYG-----GDPAAALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGK 436
             LD +  L  L Y+GY         A+A+ VTR + +D +K+QT+RNVFRC + G +  GK
Sbjct:   372 LDVQRCLEYLGYLGYSILAEQESQASAITVTRDKKIDLQKKQTQRNVFRCNVVGMKGCGK 431

Query:   437 SALLNSFLERPFSENYAPTTGEQ--YAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEA 494
             S +L + L R            +  YA+N V    G +K L+L ++ +    + L++ E 
Sbjct:   432 SGVLQALLGRNLMRQRQIRAEHKSYYAINTV-YVYGQEKYLLLHDVSDS---EFLTDAET 487

Query:   495 LASCDVTIFVYDSSDEYSWKRTKELLVEVARLG-EDSGYGVPCLLIASKDDLKPYTMAVQ 553
             +  CDV   VYD S+  S+    E  V + +    DS   +PCL++A+K DL        
Sbjct:   488 I--CDVVCLVYDVSNPKSF----EYCVRIFKQHFMDSR--IPCLVVAAKSDLHEVRQEYS 539

Query:   554 DS-ARVTQELGIEPPIPVSMKSKDL--NNVFSRIIWAAEHPHL 593
              S A   ++  + PP   +  + D+   ++F ++   A +PH+
Sbjct:   540 ISPAEFCKKHKMPPPQAFTCNTVDMPSKDIFVKLTTMAMYPHV 582

GO:0003924 "GTPase activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0019725 "cellular homeostasis" evidence=IEA

GO:0031307 "integral to mitochondrial outer membrane" evidence=IEA

GO:0047497 "mitochondrion transport along microtubule" evidence=IEA

UNIPROTKB|G1K237 RHOT1 "Mitochondrial Rho GTPase" [Bos taurus (taxid:9913)]

 Score = 1022 (364.8 bits), Expect = 3.7e-103, P = 3.7e-103
 Identities = 233/585 (39%), Positives = 343/585 (58%)

Query:    25 KSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRAD 84
             K+SLI +  +E  PE+VPP      +P D  P+RVP  I+D S + ++  +L++E+ +A+
Sbjct:    30 KTSLIMSLVSEEFPEEVPPRAEEITIPADVTPERVPTHIVDYSEAEQSDEQLHQEISQAN 89

Query:    85 AVVLTYACNQQSTLSRLSSYWLP---ELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMG 141
              + + YA N + ++ +++S W+P   E    + ++P+I+ G K DL      +S+E ++ 
Sbjct:    90 VICIVYAVNNKHSIDKVTSRWIPLINERTDKDSRLPLILVGNKSDLV---EYSSMETIL- 145

Query:   142 PIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRI 201
             PIM Q+ EIETCVECSA  +  + ++FYYAQKAVLHPT PL+  +E+ +KP C++AL RI
Sbjct:   146 PIMNQYTEIETCVECSAKNLKNISELFYYAQKAVLHPTGPLYCPEEKEMKPACIKALTRI 205

Query:   202 FIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFL 261
             F I D D DG LNDAELN FQ  CFN PL P  +  VK VV++   DGV D GLTL GFL
Sbjct:   206 FKISDQDNDGTLNDAELNFFQRICFNTPLAPQALEDVKNVVRKHISDGVADGGLTLKGFL 265

Query:   262 FLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGI 321
             FLH LFI++GR ETTW VLR+FGY DDL+L  ++L    K+ PD + EL   A  FL+  
Sbjct:   266 FLHTLFIQRGRHETTWTVLRRFGYDDDLDLTPEYLFPLLKIPPDCTTELNHHAYLFLQST 325

Query:   322 FGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTL 381
             F  +D+D D A+ P EL+DLF   P  PW      +   T   G +T +GF+S+W L T 
Sbjct:   326 FDKHDLDRDCALSPDELKDLFKVFPYIPWGP-DVNNTVGTNEKGWITYQGFLSQWTLTTY 384

Query:   382 LDPRHSLANLIYVGYG-----GDPAAALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGK 436
             LD +  L  L Y+GY         A+A+ VTR + +D +K+QT+RNVFRC + G +N GK
Sbjct:   385 LDVQRCLEYLGYLGYSILTEQESQASAITVTRDKKIDLQKKQTQRNVFRCNVIGMKNCGK 444

Query:   437 SALLNSFLERPFSENYAPTTGEQ--YAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEA 494
             S +L + L R  +         +  YA+N V    G +K L+L +I E    + L+  E 
Sbjct:   445 SGVLQALLGRNLTRQKKIRDDHKSYYAINTV-YVYGQEKYLLLHDISES---EFLTEAEI 500

Query:   495 LASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDL----KPYTM 550
             L  CDV   VYD S+  S++    +  +      DS   +PCL++A+K DL    + Y++
Sbjct:   501 L--CDVVCLVYDVSNPKSFEYCARIFKQHFM---DSR--IPCLIVAAKSDLHEVKQEYSI 553

Query:   551 AVQDSARVTQELGIEPPIPVSMKSKDL--NNVFSRIIWAAEHPHL 593
             +  D  R  +   + PP   +  + D    ++F ++   A +PH+
Sbjct:   554 SPTDFCRKHK---MPPPQAFTCNTADAPSKDIFVKLTTMAMYPHV 595

GO:0047497 "mitochondrion transport along microtubule" evidence=IEA

GO:0031307 "integral to mitochondrial outer membrane" evidence=IEA

GO:0019725 "cellular homeostasis" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

UNIPROTKB|J9NUJ0 RHOT1 "Mitochondrial Rho GTPase" [Canis lupus familiaris (taxid:9615)]

 Score = 1022 (364.8 bits), Expect = 3.7e-103, P = 3.7e-103
 Identities = 233/587 (39%), Positives = 343/587 (58%)

Query:    25 KSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRAD 84
             K+SLI +  +E  PE+VPP      +P D  P+RVP  I+D S + ++  +L++E+ +A+
Sbjct:    30 KTSLIMSLVSEEFPEEVPPRAEEITIPADVTPERVPTHIVDYSEAEQSDEQLHQEISQAN 89

Query:    85 AVVLTYACNQQSTLSRLSSYWLP---ELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMG 141
              + + YA N + ++ +++S W+P   E    + ++P+I+ G K DL      +S+E ++ 
Sbjct:    90 VICIVYAVNNKHSIDKVTSRWIPLINERTDKDSRLPLILVGNKSDLV---EYSSMETIL- 145

Query:   142 PIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRI 201
             PIM Q+ EIETCVECSA  +  + ++FYYAQKAVLHPT PL+  +E+ +KP C++AL RI
Sbjct:   146 PIMNQYTEIETCVECSAKNLKNISELFYYAQKAVLHPTGPLYCPEEKEMKPACIKALTRI 205

Query:   202 FIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFL 261
             F I D D DG LNDAELN FQ  CFN PL P  +  VK VV++   DGV D GLTL GFL
Sbjct:   206 FKISDQDNDGTLNDAELNFFQRICFNTPLAPQALEDVKNVVRKHISDGVADSGLTLKGFL 265

Query:   262 FLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGI 321
             FLH LFI++GR ETTW VLR+FGY DDL+L  ++L    K+ PD + EL   A  FL+  
Sbjct:   266 FLHTLFIQRGRHETTWTVLRRFGYDDDLDLTPEYLFPLLKIPPDCTTELNHHAYLFLQST 325

Query:   322 FGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTL 381
             F  +D+D D A+ P EL+DLF   P  PW      +   T   G +T +GF+S+W L T 
Sbjct:   326 FDKHDLDRDCALSPDELKDLFKVFPYIPWGP-DVNNTVCTNERGWITYQGFLSQWTLTTY 384

Query:   382 LDPRHSLANLIYVGYG-----GDPAAALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGK 436
             LD +  L  L Y+GY         A+A+ VTR + +D +K+QT+RNVFRC + G +N+GK
Sbjct:   385 LDVQRCLEYLGYLGYSILTEQESQASAITVTRDKKIDLQKKQTQRNVFRCNVIGMKNSGK 444

Query:   437 SALLNSFLERPF--SENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEA 494
             S +L + L R     +         YA+N V    G +K L+L +I E    + L+  E 
Sbjct:   445 SGVLQALLGRNLMRQKKIRDDHKSYYAINTV-YVYGQEKYLLLHDISES---EFLTEAEI 500

Query:   495 LASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDL----KPYTM 550
             +  CDV   VYD S+  S++    +  +      DS   +PCL+IA+K DL    + Y++
Sbjct:   501 I--CDVVCLVYDVSNSKSFEYCARIFKQHFM---DSR--IPCLIIAAKSDLHEVKQDYSI 553

Query:   551 AVQDSARVTQELGIEPPIPVSMKSKDL--NNVFSRIIWAAEHPHLNI 595
             +  D  R  +   + PP   +  + D    ++F ++   A +PH  +
Sbjct:   554 SPADFCRKHK---MPPPQAFTCNTADAPSKDIFVKLTTMAMYPHARL 597

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0019725 "cellular homeostasis" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

UNIPROTKB|Q2HJF8 RHOT1 "Mitochondrial Rho GTPase 1" [Bos taurus (taxid:9913)]

 Score = 1020 (364.1 bits), Expect = 6.0e-103, P = 6.0e-103
 Identities = 233/585 (39%), Positives = 343/585 (58%)

Query:    25 KSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRAD 84
             K+SLI +  +E  PE+VPP      +P D  P+RVP  I+D S + ++  +L++E+ +A+
Sbjct:    30 KTSLIMSLVSEEFPEEVPPRAEEITIPADVTPERVPTHIVDYSEAEQSDEQLHQEISQAN 89

Query:    85 AVVLTYACNQQSTLSRLSSYWLP---ELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMG 141
              + + YA N + ++ +++S W+P   E    + ++P+I+ G K DL      +S+E ++ 
Sbjct:    90 VICIVYAVNNKHSIDKVTSRWIPLINERTDKDSRLPLILVGNKSDLV---EYSSMETIL- 145

Query:   142 PIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRI 201
             PIM Q+ EIETCVECSA  +  + ++FYYAQKAVLHPT PL+  +E+ +KP C++AL RI
Sbjct:   146 PIMNQYTEIETCVECSAKNLKNISELFYYAQKAVLHPTGPLYCPEEKEMKPACIKALTRI 205

Query:   202 FIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFL 261
             F I D D DG LNDAELN FQ  CFN PL P  +  VK VV++   DGV D GLTL GFL
Sbjct:   206 FKISDQDNDGTLNDAELNFFQRICFNTPLAPQALEDVKNVVRKHISDGVADGGLTLKGFL 265

Query:   262 FLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGI 321
             FLH LFI++GR ETTW VLR+FGY DDL+L  ++L    K+ PD + EL   A  FL+  
Sbjct:   266 FLHTLFIQRGRHETTWTVLRRFGYDDDLDLTPEYLFPLLKIPPDCTTELNHHAYLFLQST 325

Query:   322 FGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTL 381
             F  +D+D D A+ P EL+DLF   P  PW      +   T   G +T +GF+S+W L T 
Sbjct:   326 FDKHDLDRDCALSPDELKDLFKVFPYIPWGP-DVNNTVCTNEKGWITYQGFLSQWTLTTY 384

Query:   382 LDPRHSLANLIYVGYG-----GDPAAALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGK 436
             LD +  L  L Y+GY         A+A+ VTR + +D +K+QT+RNVFRC + G +N GK
Sbjct:   385 LDVQRCLEYLGYLGYSILTEQESQASAITVTRDKKIDLQKKQTQRNVFRCNVIGMKNCGK 444

Query:   437 SALLNSFLERPFSENYAPTTGEQ--YAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEA 494
             S +L + L R  +         +  YA+N V    G +K L+L +I E    + L+  E 
Sbjct:   445 SGVLQALLGRNLTRQKKIRDDHKSYYAINTV-YVYGQEKYLLLHDISES---EFLTEAEI 500

Query:   495 LASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDL----KPYTM 550
             L  CDV   VYD S+  S++    +  +      DS   +PCL++A+K DL    + Y++
Sbjct:   501 L--CDVVCLVYDVSNPKSFEYCARIFKQHFM---DSR--IPCLIVAAKSDLHEVKQEYSI 553

Query:   551 AVQDSARVTQELGIEPPIPVSMKSKDL--NNVFSRIIWAAEHPHL 593
             +  D  R  +   + PP   +  + D    ++F ++   A +PH+
Sbjct:   554 SPTDFCRKHK---MPPPQAFTCNTADAPSKDIFVKLTTMAMYPHV 595

GO:0047497 "mitochondrion transport along microtubule" evidence=ISS

GO:0031307 "integral to mitochondrial outer membrane" evidence=ISS

GO:0019725 "cellular homeostasis" evidence=ISS

GO:0006915 "apoptotic process" evidence=ISS

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

UNIPROTKB|J9JIH9 RHOT1 "Mitochondrial Rho GTPase" [Homo sapiens (taxid:9606)]

 Score = 1018 (363.4 bits), Expect = 9.8e-103, P = 9.8e-103
 Identities = 232/587 (39%), Positives = 342/587 (58%)

Query:    25 KSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRAD 84
             K+SLI +  +E  PE+VPP      +P D  P+RVP  I+D S + ++  +L++E+ +A+
Sbjct:    17 KTSLIMSLVSEEFPEEVPPRAEEITIPADVTPERVPTHIVDYSEAEQSDEQLHQEISQAN 76

Query:    85 AVVLTYACNQQSTLSRLSSYWLP---ELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMG 141
              + + YA N + ++ +++S W+P   E    + ++P+I+ G K DL      +S+E ++ 
Sbjct:    77 VICIVYAVNNKHSIDKVTSRWIPLINERTDKDSRLPLILVGNKSDLV---EYSSMETIL- 132

Query:   142 PIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRI 201
             PIM Q+ EIETCVECSA  +  + ++FYYAQKAVLHPT PL+  +E+ +KP C++AL RI
Sbjct:   133 PIMNQYTEIETCVECSAKNLKNISELFYYAQKAVLHPTGPLYCPEEKEMKPACIKALTRI 192

Query:   202 FIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFL 261
             F I D D DG LNDAELN FQ  CFN PL P  +  VK VV++   DGV D GLTL GFL
Sbjct:   193 FKISDQDNDGTLNDAELNFFQRICFNTPLAPQALEDVKNVVRKHISDGVADSGLTLKGFL 252

Query:   262 FLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGI 321
             FLH LFI++GR ETTW VLR+FGY DDL+L  ++L    K+ PD + EL   A  FL+  
Sbjct:   253 FLHTLFIQRGRHETTWTVLRRFGYDDDLDLTPEYLFPLLKIPPDCTTELNHHAYLFLQST 312

Query:   322 FGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTL 381
             F  +D+D D A+ P EL+DLF   P  PW      +   T   G +T +GF+S+W L T 
Sbjct:   313 FDKHDLDRDCALSPDELKDLFKVFPYIPWGP-DVNNTVCTNERGWITYQGFLSQWTLTTY 371

Query:   382 LDPRHSLANLIYVGYG-----GDPAAALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGK 436
             LD +  L  L Y+GY         A+A+ VTR + +D +K+QT+RNVFRC + G +N GK
Sbjct:   372 LDVQRCLEYLGYLGYSILTEQESQASAVTVTRDKKIDLQKKQTQRNVFRCNVIGVKNCGK 431

Query:   437 SALLNSFLERPF--SENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEA 494
             S +L + L R     +         YA+N V    G +K L+L +I E    + L+  E 
Sbjct:   432 SGVLQALLGRNLMRQKKIREDHKSYYAINTV-YVYGQEKYLLLHDISES---EFLTEAEI 487

Query:   495 LASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDL----KPYTM 550
             +  CDV   VYD S+  S++    +  +      DS   +PCL++A+K DL    + Y++
Sbjct:   488 I--CDVVCLVYDVSNPKSFEYCARIFKQHFM---DSR--IPCLIVAAKSDLHEVKQEYSI 540

Query:   551 AVQDSARVTQELGIEPPIPVSMKSKDL--NNVFSRIIWAAEHPHLNI 595
             +  D  R  +   + PP   +  + D    ++F ++   A +PH  +
Sbjct:   541 SPTDFCRKHK---MPPPQAFTCNTADAPSKDIFVKLTTMAMYPHARL 584

GO:0003924 "GTPase activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0019725 "cellular homeostasis" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

UNIPROTKB|Q8IXI2 RHOT1 "Mitochondrial Rho GTPase 1" [Homo sapiens (taxid:9606)]

 Score = 1018 (363.4 bits), Expect = 9.8e-103, P = 9.8e-103
 Identities = 232/585 (39%), Positives = 342/585 (58%)

Query:    25 KSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRAD 84
             K+SLI +  +E  PE+VPP      +P D  P+RVP  I+D S + ++  +L++E+ +A+
Sbjct:    17 KTSLIMSLVSEEFPEEVPPRAEEITIPADVTPERVPTHIVDYSEAEQSDEQLHQEISQAN 76

Query:    85 AVVLTYACNQQSTLSRLSSYWLP---ELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMG 141
              + + YA N + ++ +++S W+P   E    + ++P+I+ G K DL      +S+E ++ 
Sbjct:    77 VICIVYAVNNKHSIDKVTSRWIPLINERTDKDSRLPLILVGNKSDLV---EYSSMETIL- 132

Query:   142 PIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRI 201
             PIM Q+ EIETCVECSA  +  + ++FYYAQKAVLHPT PL+  +E+ +KP C++AL RI
Sbjct:   133 PIMNQYTEIETCVECSAKNLKNISELFYYAQKAVLHPTGPLYCPEEKEMKPACIKALTRI 192

Query:   202 FIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFL 261
             F I D D DG LNDAELN FQ  CFN PL P  +  VK VV++   DGV D GLTL GFL
Sbjct:   193 FKISDQDNDGTLNDAELNFFQRICFNTPLAPQALEDVKNVVRKHISDGVADSGLTLKGFL 252

Query:   262 FLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGI 321
             FLH LFI++GR ETTW VLR+FGY DDL+L  ++L    K+ PD + EL   A  FL+  
Sbjct:   253 FLHTLFIQRGRHETTWTVLRRFGYDDDLDLTPEYLFPLLKIPPDCTTELNHHAYLFLQST 312

Query:   322 FGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTL 381
             F  +D+D D A+ P EL+DLF   P  PW      +   T   G +T +GF+S+W L T 
Sbjct:   313 FDKHDLDRDCALSPDELKDLFKVFPYIPWGP-DVNNTVCTNERGWITYQGFLSQWTLTTY 371

Query:   382 LDPRHSLANLIYVGYG-----GDPAAALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGK 436
             LD +  L  L Y+GY         A+A+ VTR + +D +K+QT+RNVFRC + G +N GK
Sbjct:   372 LDVQRCLEYLGYLGYSILTEQESQASAVTVTRDKKIDLQKKQTQRNVFRCNVIGVKNCGK 431

Query:   437 SALLNSFLERPF--SENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEA 494
             S +L + L R     +         YA+N V    G +K L+L +I E    + L+  E 
Sbjct:   432 SGVLQALLGRNLMRQKKIREDHKSYYAINTV-YVYGQEKYLLLHDISES---EFLTEAEI 487

Query:   495 LASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDL----KPYTM 550
             +  CDV   VYD S+  S++    +  +      DS   +PCL++A+K DL    + Y++
Sbjct:   488 I--CDVVCLVYDVSNPKSFEYCARIFKQHFM---DSR--IPCLIVAAKSDLHEVKQEYSI 540

Query:   551 AVQDSARVTQELGIEPPIPVSMKSKDL--NNVFSRIIWAAEHPHL 593
             +  D  R  +   + PP   +  + D    ++F ++   A +PH+
Sbjct:   541 SPTDFCRKHK---MPPPQAFTCNTADAPSKDIFVKLTTMAMYPHV 582

GO:0003924 "GTPase activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0019725 "cellular homeostasis" evidence=IMP

GO:0031307 "integral to mitochondrial outer membrane" evidence=IDA

GO:0006915 "apoptotic process" evidence=IMP

GO:0047497 "mitochondrion transport along microtubule" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005829 "cytosol" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0007264 "small GTPase mediated signal transduction" evidence=TAS

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6NVC5	MIRO1_DANRE	3, ., 6, ., 5, ., -	0.3819	0.9269	0.9628	yes	no
Q8BG51	MIRO1_MOUSE	3, ., 6, ., 5, ., -	0.3824	0.9393	0.9572	yes	no
Q8IXI2	MIRO1_HUMAN	3, ., 6, ., 5, ., -	0.3848	0.9331	0.9708	yes	no
P0CO78	GEM1_CRYNJ	3, ., 6, ., 5, ., -	0.3888	0.9486	0.8892	yes	no
Q6FIR8	GEM1_CANGA	3, ., 6, ., 5, ., -	0.3572	0.8880	0.8798	yes	no
Q94263	MIRO_CAEEL	3, ., 6, ., 5, ., -	0.3359	0.9035	0.9296	yes	no
Q5ZM83	MIRO2_CHICK	3, ., 6, ., 5, ., -	0.3968	0.9346	0.9724	yes	no
Q6C2J1	GEM1_YARLI	3, ., 6, ., 5, ., -	0.3137	0.8989	0.8691	yes	no
Q5B5L3	GEM1_EMENI	3, ., 6, ., 5, ., -	0.3544	0.9020	0.9148	yes	no
Q6CY37	GEM1_KLULA	3, ., 6, ., 5, ., -	0.3200	0.9502	0.9271	yes	no
Q4WN24	GEM1_ASPFU	3, ., 6, ., 5, ., -	0.3643	0.9020	0.9177	yes	no
O59781	GEM1_SCHPO	3, ., 6, ., 5, ., -	0.3317	0.9253	0.9444	yes	no
Q758X6	GEM1_ASHGO	3, ., 6, ., 5, ., -	0.3312	0.8989	0.8744	yes	no
Q298L5	MIRO_DROPS	3, ., 6, ., 5, ., -	0.3648	0.8895	0.8813	yes	no
Q4I2W2	GEM1_GIBZE	3, ., 6, ., 5, ., -	0.3502	0.9346	0.9585	yes	no
P39722	GEM1_YEAST	3, ., 6, ., 5, ., -	0.3456	0.9626	0.9350	yes	no
Q8IMX7	MIRO_DROME	3, ., 6, ., 5, ., -	0.3630	0.8895	0.8773	yes	no
Q2HJF8	MIRO1_BOVIN	3, ., 6, ., 5, ., -	0.3857	0.9471	0.9651	yes	no
Q6DIS1	MIRO2_XENTR	3, ., 6, ., 5, ., -	0.3802	0.9051	0.9448	yes	no
Q2UM43	GEM1_ASPOR	3, ., 6, ., 5, ., -	0.3627	0.9020	0.9162	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	643
cd01893	168	cd01893, Miro1, Mitochondrial Rho family 1 (Miro1)	9e-84
cd01892	180	cd01892, Miro2, Mitochondrial Rho family 2 (Miro2)	1e-63
pfam08356	89	pfam08356, EF_assoc_2, EF hand associated	1e-41
pfam08355	75	pfam08355, EF_assoc_1, EF hand associated	1e-28
pfam08477	116	pfam08477, Miro, Miro-like protein	6e-21
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	2e-17
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	2e-17
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	2e-14
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	2e-13
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	2e-13
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	5e-13
pfam08477	116	pfam08477, Miro, Miro-like protein	6e-13
cd04131	176	cd04131, Rnd, Rho family GTPase subfamily Rnd incl	1e-12
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	2e-12
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	4e-11
cd01873	195	cd01873, RhoBTB, RhoBTB protein is an atypical mem	1e-10
cd04172	182	cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases	1e-09
pfam00071	162	pfam00071, Ras, Ras family	2e-09
cd00880	161	cd00880, Era_like, E	3e-09
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	1e-08
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	2e-08
cd01875	191	cd01875, RhoG, Ras homolog family, member G (RhoG)	3e-08
cd01871	174	cd01871, Rac1_like, Ras-related C3 botulinum toxin	7e-08
cd04133	173	cd04133, Rop_like, Rho-related protein from plants	7e-08
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	1e-07
cd01870	175	cd01870, RhoA_like, Ras homology family A (RhoA)-l	2e-07
cd04135	174	cd04135, Tc10, Rho GTPase TC10 (Tc10)	4e-07
cd04173	221	cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases	8e-07
cd04155	174	cd04155, Arl3, Arf-like 3 (Arl3) GTPase	1e-06
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	2e-06
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	2e-06
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	5e-06
cd04161	167	cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (A	5e-06
TIGR00450	442	TIGR00450, mnmE_trmE_thdF, tRNA modification GTPas	8e-06
pfam01926	117	pfam01926, MMR_HSR1, 50S ribosome-binding GTPase	1e-05
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	1e-05
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	1e-05
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	1e-05
cd04154	173	cd04154, Arl2, Arf-like 2 (Arl2) GTPase	3e-05
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	3e-05
cd04174	232	cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases	5e-05
cd04135	174	cd04135, Tc10, Rho GTPase TC10 (Tc10)	1e-04
cd01874	175	cd01874, Cdc42, cell division cycle 42 (Cdc42) is	1e-04
cd01874	175	cd01874, Cdc42, cell division cycle 42 (Cdc42) is	1e-04
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	1e-04
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	2e-04
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	3e-04
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	3e-04
cd04156	160	cd04156, ARLTS1, Arf-like tumor suppressor gene 1	3e-04
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	5e-04
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	6e-04
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	6e-04
cd04157	162	cd04157, Arl6, Arf-like 6 (Arl6) GTPase	7e-04
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	9e-04
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	9e-04
cd04147	197	cd04147, Ras_dva, Ras - dorsal-ventral anterior lo	0.001
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	0.001
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	0.001
cd04164	159	cd04164, trmE, trmE is a tRNA modification GTPase	0.002
pfam09439	181	pfam09439, SRPRB, Signal recognition particle rece	0.002
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	0.002
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	0.002
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	0.003
COG0486	454	COG0486, ThdF, Predicted GTPase [General function	0.003
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	0.004

>gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal

 Score =  259 bits (665), Expect = 9e-84
 Identities = 89/168 (52%), Positives = 117/168 (69%)

Query: 11  TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSL 70
             VR+V++GD G GKSSLI +  +E  PE VP V     +P D  P+RVP TI+DTSS  
Sbjct: 1   KDVRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRP 60

Query: 71  ENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD 130
           +++  L  E+++A+ + L Y+ ++ STL R+ + WLP +RRL +KVPII+ G K DLR  
Sbjct: 61  QDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDG 120

Query: 131 HNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHP 178
            +   LEE M PIM +FREIETCVECSA T+I V +VFYYAQKAVLHP
Sbjct: 121 SSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYYAQKAVLHP 168

Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168

>gnl|CDD|206679 cd01892, Miro2, Mitochondrial Rho family 2 (Miro2), C-terminal

 Score =  207 bits (530), Expect = 1e-63
 Identities = 78/187 (41%), Positives = 111/187 (59%), Gaps = 10/187 (5%)

Query: 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSEN-YAPTTGEQYAVNVVDQPGGNKKTLILQ 478
           +RNVF C + G + +GKSALL +FL R FS+N Y+PT   +YAVN V+ P G +K LIL+
Sbjct: 1   QRNVFLCFVLGAKGSGKSALLQAFLGRSFSQNAYSPTIKPRYAVNTVEVP-GQEKYLILR 59

Query: 479 EIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLL 538
           E+ E+    IL N   LA+CDV   VYDSSD  S+        EV +     G  +PCL 
Sbjct: 60  EVGEDEE-AILLNDAELAACDVACLVYDSSDPNSFSY----CAEVYKKYFMLG-EIPCLF 113

Query: 539 IASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSKD-LNNVFSRIIWAAEHPHLNIP 596
           +A+K DL      A        ++LG+ PP+  S +  D  N +F+++  AA++PHL+IP
Sbjct: 114 VAAKADLDEQQQRAEVQPDEFCRKLGLPPPLHFSSRLGDSSNELFTKLATAAQYPHLSIP 173

Query: 597 ETETGRN 603
           E E+G+ 
Sbjct: 174 ELESGKT 180

Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 180

>gnl|CDD|192013 pfam08356, EF_assoc_2, EF hand associated

 Score =  145 bits (368), Expect = 1e-41
 Identities = 56/88 (63%), Positives = 66/88 (75%)

Query: 227 NAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYG 286
           N PLQP ++ G+KRVVQE+  DGVN+ GLTL GFLFL+ LFIE+GR ETTW +LRKFGY 
Sbjct: 1   NKPLQPEDLEGIKRVVQEEIPDGVNEKGLTLKGFLFLNKLFIERGRHETTWTILRKFGYT 60

Query: 287 DDLELRDDFLPVPTKLSPDQSVELASEA 314
           D L LRDDFL     + PDQSVEL+   
Sbjct: 61  DSLSLRDDFLHPKFDVPPDQSVELSPAG 88

This region predominantly appears near EF-hands (pfam00036) in GTP-binding proteins. It is found in all three eukaryotic kingdoms. Length = 89

>gnl|CDD|192012 pfam08355, EF_assoc_1, EF hand associated

 Score =  108 bits (272), Expect = 1e-28
 Identities = 31/75 (41%), Positives = 47/75 (62%), Gaps = 4/75 (5%)

Query: 349 PWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYG----GDPAAAL 404
           PW E  + D+  T   G LTL+G++++W+L TLLD + +L  L Y+G+         +A+
Sbjct: 1   PWLETNFPDSTVTNEDGYLTLQGWLAQWSLTTLLDYKTTLEYLAYLGFPVGEQESQTSAI 60

Query: 405 RVTRKRSVDRKKQQT 419
            VTR+R +DRKK QT
Sbjct: 61  TVTRERKLDRKKGQT 75

This region typically appears on the C-terminus of EF hands in GTP-binding proteins such as Arht/Rhot (may be involved in mitochondrial homeostasis and apoptosis). The EF hand associated region is found in yeast, vertebrates and plants. Length = 75

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 88.2 bits (219), Expect = 6e-21
 Identities = 38/116 (32%), Positives = 59/116 (50%), Gaps = 4/116 (3%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYP--DRVPVTIIDTSSSLE 71
           +VVV+GD+G+GKSSL++       P +   +   T          D   + I D     E
Sbjct: 1   KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGREE 60

Query: 72  NKGKLNEELKRADAVVLTYACNQQSTLSRLSSY--WLPELRRLEIKVPIIVAGCKL 125
            K +    +K ADA++L Y    + +L+ +S    WLP LR+L  K+P+I+ G KL
Sbjct: 61  LKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNLRKLGGKIPVILVGNKL 116

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score = 80.3 bits (199), Expect = 2e-17
 Identities = 53/180 (29%), Positives = 78/180 (43%), Gaps = 39/180 (21%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVP-EKVPPVHAPTRLPPDFYPDRVPV-------TII 64
           +++VVVGD   GK+ L+ +  T   P E VP V        D Y   V V        + 
Sbjct: 1   IKIVVVGDGAVGKTCLLISYTTNKFPTEYVPTVF-------DNYSANVTVDGKQVNLGLW 53

Query: 65  DTSSSLENKGKLNEELKR--------ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKV 116
           DT+          EE  R         D  +L ++ +  S+   + + W PE++     V
Sbjct: 54  DTAGQ--------EEYDRLRPLSYPQTDVFLLCFSVDSPSSFENVKTKWYPEIKHYCPNV 105

Query: 117 PIIVAGCKLDLRGDHNATS-LEEVMGPIMQQ-----FREIETC--VECSATTMIQVPDVF 168
           PII+ G K+DLR D N    LE+   PI  +      +EI     +ECSA T   + +VF
Sbjct: 106 PIILVGTKIDLRDDGNTLKKLEKKQKPITPEEGEKLAKEIGAVKYMECSALTQEGLKEVF 165

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 79.4 bits (196), Expect = 2e-17
 Identities = 50/168 (29%), Positives = 69/168 (41%), Gaps = 17/168 (10%)

Query: 16  VVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYP-----DRVPVTIIDTSSSL 70
           VVVG  G GKSSL+ A     V E V  V   TR  PD Y       +V + ++DT    
Sbjct: 1   VVVGRGGVGKSSLLNALLGGEVGE-VSDVPGTTRD-PDVYVKELDKGKVKLVLVDTPGLD 58

Query: 71  ENKGKLNEE-----LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKL 125
           E  G   EE     L+ AD ++L      + +        L  LR+  I  PII+ G K+
Sbjct: 59  EFGGLGREELARLLLRGADLILLVVDSTDRESEEDAKLLILRRLRKEGI--PIILVGNKI 116

Query: 126 DLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQK 173
           DL        +EE++              E SA T   V ++F    +
Sbjct: 117 DLL---EEREVEELLRLEELAKILGVPVFEVSAKTGEGVDELFEKLIE 161

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score = 71.5 bits (176), Expect = 2e-14
 Identities = 50/192 (26%), Positives = 78/192 (40%), Gaps = 46/192 (23%)

Query: 15  VVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIID-TSSSLENK 73
           +VVVGD   GK+ L+    T + PE                 D VP T+ +  S+ +E  
Sbjct: 1   LVVVGDGAVGKTCLLIVYTTNAFPE-----------------DYVP-TVFENYSADVEVD 42

Query: 74  GKL----------NEELKR--------ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIK 115
           GK            E+  R         D  ++ ++ +  ++   +   W PE++     
Sbjct: 43  GKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPN 102

Query: 116 VPIIVAGCKLDLRGD-HNATSLEEV-MGPIMQQF-----REIETC--VECSATTMIQVPD 166
           VPII+ G KLDLR D      L +    P+  +      + I     +ECSA T   V +
Sbjct: 103 VPIILVGTKLDLRNDKSTLEELSKKKQEPVTYEQGQALAKRIGAVKYLECSALTQEGVRE 162

Query: 167 VFYYAQKAVLHP 178
           VF  A +A L+ 
Sbjct: 163 VFEEAIRAALNK 174

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 67.9 bits (166), Expect = 2e-13
 Identities = 39/168 (23%), Positives = 67/168 (39%), Gaps = 17/168 (10%)

Query: 427 LLFGPQNAGKSALLNSFLERPFSEN---YAPTTGEQYAVNVVDQPGGNKKTLILQEIP-- 481
           ++ G    GKS+LLN+ L     E       T      V  +D+    K  L+L + P  
Sbjct: 1   VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYVKELDKG---KVKLVLVDTPGL 57

Query: 482 -EEGVKKILSN-KEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLI 539
            E G        +  L   D+ + V DS+D  S     E   ++  L      G+P +L+
Sbjct: 58  DEFGGLGREELARLLLRGADLILLVVDSTDRES-----EEDAKLLILRRLRKEGIPIILV 112

Query: 540 ASKDDLKP-YTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVFSRII 585
            +K DL     +          ++   P   VS K+ + ++ +F ++I
Sbjct: 113 GNKIDLLEEREVEELLRLEELAKILGVPVFEVSAKTGEGVDELFEKLI 160

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score = 69.3 bits (170), Expect = 2e-13
 Identities = 50/185 (27%), Positives = 78/185 (42%), Gaps = 31/185 (16%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVPEK-VPPV---HAPTRLPPDFYPDRVPVTIIDTSS 68
           V++VVVGD G GK+ L+   A  S PE+ VP V   +  T   P+     + + + DT+ 
Sbjct: 4   VKIVVVGDGGCGKTCLLMVYAQGSFPEEYVPTVFENYVTTLQVPNGKI--IELALWDTAG 61

Query: 69  SLENKGKLNEELKR--------ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIV 120
                    E+  R         D +++ Y+ +  ++L  +   W PE+       PI++
Sbjct: 62  --------QEDYDRLRPLSYPDVDVILICYSVDNPTSLDNVEDKWYPEVNHFCPGTPIVL 113

Query: 121 AGCKLDLRGDHNATSLEEVMGP-IMQQFREIETC--------VECSATTMIQVPDVFYYA 171
            G K DLR D N+ S     G   +   +             +ECSA  M  V +VF  A
Sbjct: 114 VGLKTDLRKDKNSVSKLRAQGLEPVTPEQGESVAKSIGAVAYIECSAKLMENVDEVFDAA 173

Query: 172 QKAVL 176
               L
Sbjct: 174 INVAL 178

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score = 68.4 bits (167), Expect = 5e-13
 Identities = 37/165 (22%), Positives = 64/165 (38%), Gaps = 8/165 (4%)

Query: 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIP 481
             F+ ++ G    GK+ LLN  +   F E Y PT G       ++    N K  +     
Sbjct: 4   KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAG 63

Query: 482 EEGVKKILSNKEALASCDVTIFVYDSSD-EYSWKRTKELLVEVARLGEDSGYGVPCLLIA 540
           +E  + +          +  + VYDS+  E S + T+E L E+  L  D    VP LL+ 
Sbjct: 64  QEEYRSLRPEYY--RGANGILIVYDSTLRESSDELTEEWLEELRELAPD---DVPILLVG 118

Query: 541 SKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSKDLNNVFSRII 585
           +K DL  +         + Q       + ++ K+         ++
Sbjct: 119 NKIDL--FDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALL 161

Length = 219

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 65.5 bits (160), Expect = 6e-13
 Identities = 24/119 (20%), Positives = 50/119 (42%), Gaps = 3/119 (2%)

Query: 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG 484
           + ++ G + +GKS+LL+  +   F        G+  AV+ + +  G+   L + +     
Sbjct: 1   KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTL-EVDGDTGLLNIWD-FGGR 58

Query: 485 VKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKD 543
            +    +   +   D  + VYD +D  S      L+  +  L    G  +P +L+ +K 
Sbjct: 59  EELKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNL-RKLGGKIPVILVGNKL 116

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8

 Score = 65.9 bits (161), Expect = 1e-12
 Identities = 52/176 (29%), Positives = 79/176 (44%), Gaps = 11/176 (6%)

Query: 12  GVRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSL 70
             ++V+VGD   GK++L+   A +S PE  VP V        +    R+ +++ DTS S 
Sbjct: 1   RCKIVLVGDSQCGKTALLQVFAKDSFPENYVPTVFENYTASFEVDKQRIELSLWDTSGSP 60

Query: 71  ENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD 130
                       +DAV++ +  ++  TL  +   W  E+R      P+++ GCK DLR D
Sbjct: 61  YYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEVREFCPNTPVLLVGCKSDLRTD 120

Query: 131 -HNATSL-EEVMGPI-----MQQFREI--ETCVECSATTM-IQVPDVFYYAQKAVL 176
               T L  +   P+         ++I     VECSA T    V DVF  A  A L
Sbjct: 121 LSTLTELSNKRQIPVSHEQGRNLAKQIGAAAYVECSAKTSENSVRDVFEMATLACL 176

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score = 66.9 bits (163), Expect = 2e-12
 Identities = 47/200 (23%), Positives = 80/200 (40%), Gaps = 22/200 (11%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVPEKVPP-----VHAPTRLPPDFYPDRVPVTIIDTS 67
            ++VV+GD G GK++L+     +  PE  PP       A T  P   Y   + + + DT+
Sbjct: 6   FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEP---YRRNIKLQLWDTA 62

Query: 68  SSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLD 126
              E +    E  + A+ +++ Y    + +   L+  WL ELR L    VPI++ G K+D
Sbjct: 63  GQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKID 122

Query: 127 LRGDHN-----------ATSLEEVMGPIMQQFREIETCVECSA--TTMIQVPDVFYYAQK 173
           L  + +              L  +    +         +E SA   T   V ++F    +
Sbjct: 123 LFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELLR 182

Query: 174 AVLHPTAPLFDHDEQTLKPR 193
            +L     L   +E     R
Sbjct: 183 KLLEEIEKLVLKNELRQLDR 202

Length = 219

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score = 61.3 bits (150), Expect = 4e-11
 Identities = 44/169 (26%), Positives = 65/169 (38%), Gaps = 22/169 (13%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPV-------TIID 65
            ++V++GD G GK+SL+         E     +  T +  DF    + V        I D
Sbjct: 1   FKIVLIGDSGVGKTSLLLRFVDNKFSEN----YKST-IGVDFKSKTIEVDGKKVKLQIWD 55

Query: 66  TSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCK 124
           T+     +   +   + A   +L Y    + +   L   WL EL+      +PII+ G K
Sbjct: 56  TAGQERFRSITSSYYRGAHGAILVYDVTNRESFENLD-KWLNELKEYAPPNIPIILVGNK 114

Query: 125 LDLRGDHNATSLEEVMGPIMQQFREIE--TCVECSATTMIQVPDVFYYA 171
            DL  D    S EE      QQF +       E SA T   V + F   
Sbjct: 115 SDLE-DERQVSTEEA-----QQFAKENGLLFFETSAKTGENVDEAFESL 157

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|133275 cd01873, RhoBTB, RhoBTB protein is an atypical member of the Rho family of small GTPases

 Score = 61.1 bits (148), Expect = 1e-10
 Identities = 40/131 (30%), Positives = 60/131 (45%), Gaps = 15/131 (11%)

Query: 13  VRVVVVGDRGTGKSSLIAAAA--TESVPEKVPPVHAPTRLPPDFY------PDRVPVTII 64
           ++ VVVGD   GK+ LI A A        ++   H PT    D Y       +R    + 
Sbjct: 3   IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVD 62

Query: 65  DTSSSLENKGKLNEELK-------RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVP 117
             S SL       +  K       R+D V+L ++    ++L  + + W PE+R    +VP
Sbjct: 63  GVSVSLRLWDTFGDHDKDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVP 122

Query: 118 IIVAGCKLDLR 128
           +I+ GCKLDLR
Sbjct: 123 VILVGCKLDLR 133

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. Length = 195

>gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases

 Score = 57.8 bits (139), Expect = 1e-09
 Identities = 47/172 (27%), Positives = 76/172 (44%), Gaps = 11/172 (6%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLEN 72
           ++VVVGD   GK++L+   A +  PE  VP V        +    R+ +++ DTS S   
Sbjct: 7   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY 66

Query: 73  KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD-- 130
                     +DAV++ +  ++  TL  +   W  E++       +++ GCK DLR D  
Sbjct: 67  DNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVS 126

Query: 131 -------HNATSLEEVMGPIMQQFREIETCVECSAT-TMIQVPDVFYYAQKA 174
                  H  T +    G  M +     T +ECSA  +   V D+F+ A  A
Sbjct: 127 TLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLA 178

Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score = 56.7 bits (138), Expect = 2e-09
 Identities = 49/174 (28%), Positives = 73/174 (41%), Gaps = 24/174 (13%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPV-------TIIDT 66
           ++V+VGD G GKSSL+        PE+    + PT +  DFY   + V        I DT
Sbjct: 1   KLVLVGDGGVGKSSLLIRFTQNKFPEE----YIPT-IGVDFYTKTIEVDGKTVKLQIWDT 55

Query: 67  SSSLENKGKLNEELKR-ADAVVLTYACNQQSTLSRLSSYWLPELRR-LEIKVPIIVAGCK 124
            +  E    L     R A   +L Y    + +   +   WL E+ R  +  VPI++ G K
Sbjct: 56  -AGQERFRALRPLYYRGAQGFLLVYDITSRDSFENVKK-WLEEILRHADENVPIVLVGNK 113

Query: 125 LDLRGDHNATSLEEVMGPIMQQF-REIETC-VECSATTMIQVPDVFYYAQKAVL 176
            DL       S EE      +   +E+    +E SA T   V + F    + +L
Sbjct: 114 CDLEDQR-VVSTEEG-----EALAKELGLPFMETSAKTNENVEEAFEELAREIL 161

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|206646 cd00880, Era_like, E

 Score = 56.1 bits (136), Expect = 3e-09
 Identities = 42/166 (25%), Positives = 63/166 (37%), Gaps = 17/166 (10%)

Query: 428 LFGPQNAGKSALLNSFLERPFSE--NYAPTTGEQYAVNVVDQPGGNKKTLI----LQEIP 481
           +FG  N GKS+LLN+ L +          TT +         P G    LI    L E  
Sbjct: 2   IFGRPNVGKSSLLNALLGQNVGIVSPIPGTTRDPVRKEWELLPLGP-VVLIDTPGLDEEG 60

Query: 482 EEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIAS 541
             G +++   ++     D+ + V DS            + E A+LG     G P LL+ +
Sbjct: 61  GLGRERVEEARQVADRADLVLLVVDS--------DLTPVEEEAKLGLLRERGKPVLLVLN 112

Query: 542 KDDLKP-YTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNVFSRII 585
           K DL P          R  + L   P I VS      ++ +  +I 
Sbjct: 113 KIDLVPESEEEELLRERKLELLPDLPVIAVSALPGEGIDELRKKIA 158

coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score = 54.3 bits (131), Expect = 1e-08
 Identities = 52/176 (29%), Positives = 78/176 (44%), Gaps = 30/176 (17%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYP-----DRVPV--TIID 65
           ++ V+VGD   GK+SLI +  T   P      + PT    D +      D  PV   + D
Sbjct: 1   LKCVLVGDGAVGKTSLIVSYTTNGYP----TEYVPTAF--DNFSVVVLVDGKPVRLQLCD 54

Query: 66  TSSSLENKGKLNEE-LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCK 124
           T+   +   KL        D  +L ++    S+   +S  W+PE+R+   K PII+ G +
Sbjct: 55  TAGQ-DEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQ 113

Query: 125 LDLRGDHN-----ATSLEEVMGPIMQQ-----FREIETC--VECSATTMIQVPDVF 168
            DLR D N     A   E+   P+ Q        +I  C  +ECSA T   + +VF
Sbjct: 114 ADLRTDVNVLIQLARYGEK---PVSQSRAKALAEKIGACEYIECSALTQKNLKEVF 166

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score = 54.1 bits (130), Expect = 2e-08
 Identities = 48/178 (26%), Positives = 78/178 (43%), Gaps = 22/178 (12%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPV---HAPTRLPPDFYPDRVPVTIIDTSSSL 70
           ++V+VGD   GK+SL+        PE+  P    +  T    D  P  V + + DT+   
Sbjct: 3   KLVIVGDGACGKTSLLYVFTLGEFPEEYHPTVFENYVTDCRVDGKP--VQLALWDTAGQE 60

Query: 71  ENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD 130
           E +        +A  +++ +A +   +L  + + W+ E+RR    VP+I+ G K DLR +
Sbjct: 61  EYERLRPLSYSKAHVILIGFAIDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQE 120

Query: 131 HNATSLEEVMGPIMQQFREIETC------------VECSATTMIQVPDVFYYAQKAVL 176
             A +          +F  I+              +ECSA T   V DVF  A +A L
Sbjct: 121 --AVAKGN---YATDEFVPIQQAKLVARAIGAKKYMECSALTGEGVDDVFEAATRAAL 173

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

>gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases)

 Score = 53.5 bits (128), Expect = 3e-08
 Identities = 48/178 (26%), Positives = 76/178 (42%), Gaps = 10/178 (5%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVP-EKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLE 71
           ++ VVVGD   GK+ L+    T + P E +P V              V + + DT+   E
Sbjct: 4   IKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEE 63

Query: 72  NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH 131
                     + +  ++ ++    S+   +   W PE+      VPI++ G K DLR D 
Sbjct: 64  YDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDA 123

Query: 132 NATSL--EEVMGPIMQQ-----FREIETC--VECSATTMIQVPDVFYYAQKAVLHPTA 180
           +      E+   PI  Q      ++I     +ECSA     V +VF  A +AVL+PT 
Sbjct: 124 DTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAVLNPTP 181

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191

>gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3

 Score = 52.5 bits (126), Expect = 7e-08
 Identities = 51/181 (28%), Positives = 81/181 (44%), Gaps = 26/181 (14%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVP-EKVPPVHAPTRLPPDFYPDRVPV-------TII 64
           ++ VVVGD   GK+ L+ +  T + P E +P V        D Y   V V        + 
Sbjct: 2   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-------DNYSANVMVDGKPVNLGLW 54

Query: 65  DTSSSLENKGKLNE-ELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGC 123
           DT+   E+  +L      + D  ++ ++    ++   + + W PE+R      PII+ G 
Sbjct: 55  DTAG-QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGT 113

Query: 124 KLDLRGDHNATS--LEEVMGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKA 174
           KLDLR D +      E+ + PI     +   +EI     +ECSA T   +  VF  A +A
Sbjct: 114 KLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRA 173

Query: 175 V 175
           V
Sbjct: 174 V 174

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like

 Score = 52.2 bits (125), Expect = 7e-08
 Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 7/101 (6%)

Query: 83  ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLR------GDH-NATS 135
           AD  +L ++   +++   +   W+PELR     VPI++ G KLDLR       DH  A  
Sbjct: 73  ADVFLLAFSLISKASYENVLKKWIPELRHYAPGVPIVLVGTKLDLRDDKQFFADHPGAVP 132

Query: 136 LEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVL 176
           +    G  +++       +ECS+ T   V  VF  A K VL
Sbjct: 133 ITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDAAIKVVL 173

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score = 51.8 bits (125), Expect = 1e-07
 Identities = 45/174 (25%), Positives = 75/174 (43%), Gaps = 36/174 (20%)

Query: 14  RVVVVGDRGTGKSSL-IAAAATESVPEKVPPVHAPTRLPPDFYPDRVPV-------TIID 65
           ++VV+G  G GKS+L I   + E V E  P +        D Y  ++ V        I+D
Sbjct: 1   KLVVLGAGGVGKSALTIRFVSGEFVEEYDPTIE-------DSYRKQIVVDGETYTLDILD 53

Query: 66  TSSSLENKGKLNEELKRADAVVLTYA-CNQQSTLSRLSSYWLPELRR--LEIK----VPI 118
           T+   E     ++ ++  D  +L Y+  +++S         +  +R   L +K    VPI
Sbjct: 54  TAGQEEFSAMRDQYIRNGDGFILVYSITSRESFEE------IKNIREQILRVKDKEDVPI 107

Query: 119 IVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETC--VECSATTMIQVPDVFYY 170
           ++ G K DL  +    S EE      +   E   C  +E SA T I + ++F  
Sbjct: 108 VLVGNKCDL-ENERQVSTEEG-----EALAEEWGCPFLETSAKTNINIDELFNT 155

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC

 Score = 50.9 bits (122), Expect = 2e-07
 Identities = 47/181 (25%), Positives = 81/181 (44%), Gaps = 26/181 (14%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPD------RVPVTIIDTS 67
           ++V+VGD   GK+ L+   + +  PE    V+ PT    ++  D      +V + + DT+
Sbjct: 3   KLVIVGDGACGKTCLLIVFSKDQFPE----VYVPTVFE-NYVADIEVDGKQVELALWDTA 57

Query: 68  SSLENKGKLNE-ELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLD 126
              E+  +L        D +++ ++ +   +L  +   W PE++     VPII+ G K D
Sbjct: 58  GQ-EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 116

Query: 127 LRGDHNATSLEEVM-----------GPIMQQFREIETCVECSATTMIQVPDVFYYAQKAV 175
           LR D    ++ E+            G  M +       +ECSA T   V +VF  A +A 
Sbjct: 117 LRND--EHTIRELAKMKQEPVKPEEGRAMAEKIGAFGYLECSAKTKEGVREVFEMATRAA 174

Query: 176 L 176
           L
Sbjct: 175 L 175

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10)

 Score = 50.0 bits (119), Expect = 4e-07
 Identities = 47/175 (26%), Positives = 80/175 (45%), Gaps = 12/175 (6%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLE 71
           ++ VVVGD   GK+ L+ + A ++ PE+ VP V     +       +  + + DT+   E
Sbjct: 1   LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQ-E 59

Query: 72  NKGKLNE-ELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD 130
           +  +L        D  ++ ++    ++   +   W+PEL+     VP ++ G ++DLR D
Sbjct: 60  DYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLIGTQIDLRDD 119

Query: 131 HN--ATSLEEVMGPIMQQ-----FREIETC--VECSATTMIQVPDVFYYAQKAVL 176
               A   +    PI  +      +EI  C  VECSA T   +  VF  A  A+L
Sbjct: 120 PKTLARLNDMKEKPITVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL 174

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases

 Score = 50.0 bits (119), Expect = 8e-07
 Identities = 52/201 (25%), Positives = 86/201 (42%), Gaps = 21/201 (10%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLEN 72
           ++VVVGD   GK++L+   A ++ PE  VP V        +    R+ + + DTS S   
Sbjct: 3   KIVVVGDTQCGKTALLHVFAKDNYPESYVPTVFENYTASFEIDKHRIELNMWDTSGSSYY 62

Query: 73  KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN 132
                     +DAV++ +  ++  TL  +   W  E +       +++ GCKLD+R D +
Sbjct: 63  DNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKLVLVGCKLDMRTDLS 122

Query: 133 ATSLEEV----MGPIMQQ-----FREIETC--VECSATTMIQ-VPDVFYYAQKAVLHPTA 180
             +L E+    + P+  +      R++     VECS+      V DVF+    A +    
Sbjct: 123 --TLRELSKQRLIPVTHEQGSLLARQLGAVAYVECSSRMSENSVRDVFHVTTLASVRREH 180

Query: 181 PLFDHDEQTLKPRCVRALKRI 201
           P              R LKRI
Sbjct: 181 PSLKRSTSR------RGLKRI 195

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221

>gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 43/151 (28%), Positives = 64/151 (42%), Gaps = 22/151 (14%)

Query: 414 RKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKK 473
           RK + + R   R LL G  NAGK+ +L        SE+ +  T  Q         G N K
Sbjct: 6   RKLKPSSRQEVRILLLGLDNAGKTTILKQLA----SEDISHITPTQ---------GFNIK 52

Query: 474 TLILQEIPEE-----GVKKILSN-KEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLG 527
            +             G +KI    +    + DV I+V DS+D   ++   + LVE+  L 
Sbjct: 53  NVQADGFKLNVWDIGGQRKIRPYWRNYFENTDVLIYVIDSADRKRFEEAGQELVEL--LE 110

Query: 528 EDSGYGVPCLLIASKDDLKPYTMAVQDSARV 558
           E+   GVP L+ A+K DL       ++ A  
Sbjct: 111 EEKLAGVPVLVFANKQDL-LTAAPAEEVAEA 140

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score = 47.5 bits (114), Expect = 2e-06
 Identities = 34/128 (26%), Positives = 57/128 (44%), Gaps = 17/128 (13%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLIL----QE 479
           F+ +L G    GK++LL  F++  FSENY  T G  +    ++  G   K  I     QE
Sbjct: 1   FKIVLIGDSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQE 60

Query: 480 IPEEGVKKILSN--KEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCL 537
                 + I S+  +         I VYD ++  S++   + L E+      +   +P +
Sbjct: 61  R----FRSITSSYYR----GAHGAILVYDVTNRESFENLDKWLNELKEYAPPN---IPII 109

Query: 538 LIASKDDL 545
           L+ +K DL
Sbjct: 110 LVGNKSDL 117

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 42/155 (27%), Positives = 63/155 (40%), Gaps = 17/155 (10%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSE-NYAPTTGEQYAVNVVDQPGGNKKTLILQEIP- 481
            + ++ G  N GKS LLN  L    S   Y P T   Y   V+++  G      L +   
Sbjct: 2   IKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEE-DGKTYKFNLLDTAG 60

Query: 482 EEGVKKI--LSNKEALAS---CDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPC 536
           +E    I  L  +   +S    D+ I V D          K+   E+    E    GVP 
Sbjct: 61  QEDYDAIRRLYYRAVESSLRVFDIVILVLD----VEEILEKQ-TKEIIHHAE---SGVPI 112

Query: 537 LLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVS 571
           +L+ +K DL+   +     A +  +L  EP IP+S
Sbjct: 113 ILVGNKIDLRDAKLKTHV-AFLFAKLNGEPIIPLS 146

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score = 46.9 bits (112), Expect = 5e-06
 Identities = 45/152 (29%), Positives = 69/152 (45%), Gaps = 7/152 (4%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
           F+ LL G    GKS LL  F +  ++E+Y  T G  + +  ++  G   K  I     +E
Sbjct: 3   FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAGQE 62

Query: 484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKD 543
             + I S+    A     I VYD +D+ S+   K+ L E+ R   +    V  LL+ +K 
Sbjct: 63  RFRTITSSYYRGA--HGIIIVYDVTDQESFNNVKQWLQEIDRYASE---NVNKLLVGNKC 117

Query: 544 DLKPYTMAVQDSAR-VTQELGIEPPIPVSMKS 574
           DL    +     A+    ELGI P +  S K+
Sbjct: 118 DLTDKKVVDYTEAKEFADELGI-PFLETSAKN 148

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|133361 cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (Arl2l1) and Arl13

 Score = 46.6 bits (111), Expect = 5e-06
 Identities = 38/128 (29%), Positives = 55/128 (42%), Gaps = 25/128 (19%)

Query: 427 LLFGPQNAGKSALLNSFLERPFSENYAPTTG--------EQYAVNVVDQPGGNKKTLILQ 478
           L  G  NAGK+ L+ S L+    +  APT G        ++Y V + D  GG       +
Sbjct: 3   LTVGLDNAGKTTLV-SALQGEIPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGAN----FR 57

Query: 479 EIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLL 538
            I               A     +FV DSSD+   +  KE+L E+ +    SG   P L+
Sbjct: 58  GIW----------VNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGK--PILV 105

Query: 539 IASKDDLK 546
           +A+K D K
Sbjct: 106 LANKQDKK 113

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. Length = 167

>gnl|CDD|232980 TIGR00450, mnmE_trmE_thdF, tRNA modification GTPase TrmE

 Score = 48.2 bits (115), Expect = 8e-06
 Identities = 36/168 (21%), Positives = 74/168 (44%), Gaps = 25/168 (14%)

Query: 409 KRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFL--ERPFSENYAPTTG--------- 457
           K  ++  K +   + F+  + G  N GKS+LLN+ L  +R    +   TT          
Sbjct: 189 KDILNSYKLEKLDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFEL 248

Query: 458 EQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTK 517
               + ++D  G  +    ++ +   G++K  S K A+   D+ I+V D+S      +  
Sbjct: 249 NGILIKLLDTAGIREHADFVERL---GIEK--SFK-AIKQADLVIYVLDASQ--PLTKDD 300

Query: 518 ELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE 565
            L++++ +  +      P +L+ +K DLK  ++    S++V     + 
Sbjct: 301 FLIIDLNKSKK------PFILVLNKIDLKINSLEFFVSSKVLNSSNLS 342

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer [Protein synthesis, tRNA and rRNA base modification]. Length = 442

>gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 34/128 (26%), Positives = 56/128 (43%), Gaps = 21/128 (16%)

Query: 425 RCLLFGPQNAGKSALLNSFL--ERPFSENYAPTT--------GEQYAVNVVDQPGGNKKT 474
           R  L G  N GKS L+N+    +     +Y  TT        G    + +VD PG     
Sbjct: 1   RVALVGRPNVGKSTLINALTGAKVAIVSDYPGTTRDPILGVLGLGRQIILVDTPG----- 55

Query: 475 LILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGV 534
           LI      +GV+      EA+   D+ + V D+S+  + +  +E+L E+ +L        
Sbjct: 56  LIEGASEGKGVEGFNRFLEAIREADLILLVVDASEGLT-EDDEEILEELEKL-----PKK 109

Query: 535 PCLLIASK 542
           P +L+ +K
Sbjct: 110 PIILVLNK 117

The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide. Length = 117

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score = 46.3 bits (110), Expect = 1e-05
 Identities = 43/169 (25%), Positives = 79/169 (46%), Gaps = 8/169 (4%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
            + ++ G   +GK++L+  F +  F ++Y  T G  +    +  PG    TL + +I  +
Sbjct: 1   IKIVVLGDGASGKTSLIRRFAQEGFGKSYKQTIGLDFFSRRITLPGSLNVTLQVWDIGGQ 60

Query: 484 GVK-KILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASK 542
            +  K+L     +        VYD ++  S++  ++ L  V ++ E+S      +L+ +K
Sbjct: 61  QIGGKMLDK--YIYGAQAVCLVYDITNSQSFENLEDWLSVVKKVNEESETKPKMVLVGNK 118

Query: 543 DDLKPY-TMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVFSRIIWAAE 589
            DL+    +  +  AR  QE  +   I VS K+ D +   F RI  AAE
Sbjct: 119 TDLEHNRQVTAEKHARFAQENDM-ESIFVSAKTGDRVFLCFQRI--AAE 164

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 10/121 (8%)

Query: 428 LFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK 487
           L G QN+GK+ L+N      FSE+  PT G     N+     GN  T+ + ++   G  +
Sbjct: 4   LVGLQNSGKTTLVNVIASGQFSEDTIPTVG----FNMRKVTKGNV-TIKVWDLG--GQPR 56

Query: 488 ILSNKEALA-SCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLK 546
             S  E      +  ++V D++D    +  K  L ++  L + S  G+P L++ +K+DL 
Sbjct: 57  FRSMWERYCRGVNAIVYVVDAADREKLEVAKNELHDL--LEKPSLEGIPLLVLGNKNDLP 114

Query: 547 P 547
            
Sbjct: 115 G 115

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score = 46.2 bits (109), Expect = 1e-05
 Identities = 46/187 (24%), Positives = 79/187 (42%), Gaps = 17/187 (9%)

Query: 4   GSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPP-DFYPDRVPVT 62
           G  S      +++++GD G GKSSL+ +  + SV +  P +    ++        R+ +T
Sbjct: 6   GQSSGYDLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLT 65

Query: 63  IIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIK---VPII 119
           I DT+     +   +   + A  ++L Y   ++ T + LS  W  E+         V ++
Sbjct: 66  IWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKML 125

Query: 120 VAGCKLDLRGDHNATSLEEVMGPIMQQ---FRE--------IETCVECSATTMIQVPDVF 168
           V G K+D R      S EE M    +    F E        +E C E  A  +++VP + 
Sbjct: 126 V-GNKVD-RESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEELALKIMEVPSLL 183

Query: 169 YYAQKAV 175
                AV
Sbjct: 184 EEGSTAV 190

Length = 211

>gnl|CDD|206720 cd04154, Arl2, Arf-like 2 (Arl2) GTPase

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 44/142 (30%), Positives = 63/142 (44%), Gaps = 22/142 (15%)

Query: 411 SVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGG 470
           ++ RK +Q ER + R L+ G  NAGK+ +L  F     S   +PT             G 
Sbjct: 3   TILRKTKQKEREM-RILMLGLDNAGKTTILKKFNGEDIST-ISPTL------------GF 48

Query: 471 NKKTLILQE----IPEEGVKKILSN--KEALASCDVTIFVYDSSDEYSWKRTKELLVEVA 524
           N KTL        I + G +K L +  +    S D  I+V DSSD    +  K  L ++ 
Sbjct: 49  NIKTLEYNGYKLNIWDVGGQKSLRSYWRNYFESTDALIWVVDSSDRARLEDCKRELQKL- 107

Query: 525 RLGEDSGYGVPCLLIASKDDLK 546
            L E+   G   L+ A+K DL 
Sbjct: 108 -LVEERLAGATLLIFANKQDLP 128

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. Length = 173

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score = 44.5 bits (106), Expect = 3e-05
 Identities = 43/171 (25%), Positives = 67/171 (39%), Gaps = 25/171 (14%)

Query: 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG 484
           R L+ G   AGK+ +L             PT G     NV      N K   + ++   G
Sbjct: 1   RILMLGLDGAGKTTILYKLKLGEVVTTI-PTIG----FNVETVEYKNVK-FTVWDV---G 51

Query: 485 VKKILSN--KEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASK 542
            +  +    K    + D  IFV DSSD    +  K  L ++  L E+   G P L++A+K
Sbjct: 52  GQDKIRPLWKHYYENTDGLIFVVDSSDRERIEEAKNELHKL--LNEEELKGAPLLILANK 109

Query: 543 DDLKPYTMAVQDSARVTQELGIEPP-------IPVSMKSKD-LNNVFSRII 585
            DL    +   +   + + LG+E          P S  + D L+     +I
Sbjct: 110 QDLPGA-LTESE---LIELLGLESIKGRRWHIQPCSAVTGDGLDEGLDWLI 156

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases

 Score = 44.7 bits (105), Expect = 5e-05
 Identities = 44/180 (24%), Positives = 73/180 (40%), Gaps = 11/180 (6%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLEN 72
           ++V+VGD   GK++++   A +  PE  VP V        +    RV +++ DTS S   
Sbjct: 15  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 74

Query: 73  KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD-- 130
                     +DAV+L +  ++          W  E+        I++ GCK DLR D  
Sbjct: 75  DNVRPLCYSDSDAVLLCFDISRPEIFDSALKKWRAEILDYCPSTRILLIGCKTDLRTDLS 134

Query: 131 -------HNATSLEEVMGPIMQQFREIETCVECSA-TTMIQVPDVFYYAQKAVLHPTAPL 182
                       +    G  M +    E  +ECSA T+   +  +F  A    ++  +PL
Sbjct: 135 TLMELSNQKQAPISYEQGCAMAKQLGAEAYLECSAFTSEKSIHSIFRTASLLCINKLSPL 194

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232

>gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10)

 Score = 43.1 bits (101), Expect = 1e-04
 Identities = 47/179 (26%), Positives = 78/179 (43%), Gaps = 22/179 (12%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIP-E 482
            +C++ G    GK+ LL S+    F E Y PT  + YAV+V    GG +  L L +   +
Sbjct: 1   LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSV--TVGGKQYLLGLYDTAGQ 58

Query: 483 EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASK 542
           E   ++     +    DV +  +   +  S++  KE  V   +   +    VP LLI ++
Sbjct: 59  EDYDRL--RPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELK---EYAPNVPYLLIGTQ 113

Query: 543 DDLK--PYTMA-----------VQDSARVTQELGIEPPIPVS-MKSKDLNNVFSRIIWA 587
            DL+  P T+A           V+   ++ +E+G    +  S +  K L  VF   I A
Sbjct: 114 IDLRDDPKTLARLNDMKEKPITVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIA 172

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206664 cd01874, Cdc42, cell division cycle 42 (Cdc42) is a small GTPase of the Rho family

 Score = 42.9 bits (101), Expect = 1e-04
 Identities = 45/180 (25%), Positives = 72/180 (40%), Gaps = 24/180 (13%)

Query: 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIP-EE 483
           +C++ G    GK+ LL S+    F   Y PT  + YAV V+   GG   TL L +   +E
Sbjct: 3   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM--IGGEPYTLGLFDTAGQE 60

Query: 484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLV-EVARLGEDSGYGVPCLLIASK 542
              ++     +    DV +  +      S++  KE  V E+           P LL+ ++
Sbjct: 61  DYDRL--RPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP----KTPFLLVGTQ 114

Query: 543 DDLKPYTMAVQDSARVTQ-------------ELGIEPPIPVS-MKSKDLNNVFSRIIWAA 588
            DL+     ++  A+  Q             +L     +  S +  K L NVF   I AA
Sbjct: 115 IDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 174

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206664 cd01874, Cdc42, cell division cycle 42 (Cdc42) is a small GTPase of the Rho family

 Score = 42.9 bits (101), Expect = 1e-04
 Identities = 50/184 (27%), Positives = 83/184 (45%), Gaps = 30/184 (16%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVP-EKVPPVHAPTRLPPDFYPDRV-----PVTI--I 64
           ++ VVVGD   GK+ L+ +  T   P E VP V        D Y   V     P T+   
Sbjct: 2   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-------DNYAVTVMIGGEPYTLGLF 54

Query: 65  DTSSSLENKGKLNE-ELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGC 123
           DT+   E+  +L      + D  ++ ++    S+   +   W+PE+     K P ++ G 
Sbjct: 55  DTAGQ-EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 113

Query: 124 KLDLRGDHNATSLEEV----MGPIMQQF-----REIETC--VECSATTMIQVPDVFYYAQ 172
           ++DLR D   +++E++      PI  +      R+++    VECSA T   + +VF  A 
Sbjct: 114 QIDLRDD--PSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEAI 171

Query: 173 KAVL 176
            A L
Sbjct: 172 LAAL 175

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score = 42.9 bits (102), Expect = 1e-04
 Identities = 45/175 (25%), Positives = 67/175 (38%), Gaps = 40/175 (22%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDF------YPD-RVPVTIID 65
            +++++GD G GKSSL++        E+    +  T +  DF          RV + I D
Sbjct: 1   FKIILIGDSGVGKSSLLSRFTDGKFSEQ----YKST-IGVDFKTKTIEVDGKRVKLQIWD 55

Query: 66  TSSSLENKGKLNEELKR---------ADAVVLTYACNQQSTLSRLSSYWLPELRRL-EIK 115
           T+          +E  R         A   +L Y    + +   L + WL ELR      
Sbjct: 56  TAG---------QERFRSITSSYYRGAVGALLVYDITNRESFENLEN-WLKELREYASPN 105

Query: 116 VPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETC--VECSATTMIQVPDVF 168
           V I++ G K DL  +    S EE      + F E       E SA T   V + F
Sbjct: 106 VVIMLVGNKSDLE-EQRQVSREEA-----EAFAEEHGLPFFETSAKTNTNVEEAF 154

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 40/164 (24%), Positives = 74/164 (45%), Gaps = 7/164 (4%)

Query: 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIP 481
           ++F+ L+ G    GKS+LL  F +  FS +Y  T G  + +  V+  G   K  I     
Sbjct: 5   HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAG 64

Query: 482 EEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIAS 541
           +E  + I S           I VYD ++  S+   K  L E+    E +   V  +L+ +
Sbjct: 65  QERFRTITST--YYRGTHGVIVVYDVTNGESFVNVKRWLQEI----EQNCDDVCKVLVGN 118

Query: 542 K-DDLKPYTMAVQDSARVTQELGIEPPIPVSMKSKDLNNVFSRI 584
           K DD +   +  +D+ +   ++GI      + ++ ++  +F+ I
Sbjct: 119 KNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCI 162

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score = 42.2 bits (99), Expect = 3e-04
 Identities = 45/177 (25%), Positives = 72/177 (40%), Gaps = 22/177 (12%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPP---DFYPD--RVPVTIIDTSS 68
           +VVV+GD   GK+SL+        P+    V+ PT       D + D   V +++ DT+ 
Sbjct: 2   KVVVLGDGACGKTSLLNVFTRGYFPQ----VYEPTVFENYIHDIFVDGLAVELSLWDTAG 57

Query: 69  SLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLR 128
             E     +        ++L ++ +   +L  + S WL E+R     V +++   K DLR
Sbjct: 58  QEEFDRLRSLSYADTHVIMLCFSVDNPDSLENVESKWLAEIRHHCPGVKLVLVALKCDLR 117

Query: 129 GDHNATSLEEVMGPIMQQFRE-------IETC--VECSATTMIQVPDVFYYAQKAVL 176
              N    E   G     + E       I  C  +ECSA     V + F  A +  L
Sbjct: 118 EPRN----ERDRGTHTISYEEGLAVAKRINACRYLECSAKLNRGVNEAFTEAARVAL 170

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 36/122 (29%), Positives = 54/122 (44%), Gaps = 5/122 (4%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
            + ++ G    GKSAL   F+   F E+Y PT  + Y   VV   G   +  IL    +E
Sbjct: 1   HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLD-GEEVQLNILDTAGQE 59

Query: 484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKD 543
               I  N     S +  + V+  +D  S+    E   ++ R+ ED    VP LL+ +K 
Sbjct: 60  DYAAIRDN--YFRSGEGFLLVFSITDMESFTALAEFREQILRVKEDD--NVPLLLVGNKC 115

Query: 544 DL 545
           DL
Sbjct: 116 DL 117

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11)

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 11/134 (8%)

Query: 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG 484
           + LL G  +AGKS LL             PT G  + V ++        +L + ++   G
Sbjct: 1   QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTVG--FNVEMLQLEK--HLSLTVWDV--GG 53

Query: 485 VKKILSN-KEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKD 543
            +K+ +  K  L + D  ++V DSSDE     +++ L  +  L  +   GVP +L+A+K 
Sbjct: 54  QEKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHI--LKNEHIKGVPVVLLANKQ 111

Query: 544 DLKPYTMAVQDSAR 557
           DL P  +  ++  R
Sbjct: 112 DL-PGALTAEEITR 124

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score = 40.7 bits (96), Expect = 5e-04
 Identities = 33/133 (24%), Positives = 55/133 (41%), Gaps = 30/133 (22%)

Query: 427 LLFGPQNAGKSALLNSFLERPFSENYAPTT-----------GEQYAVNVVDQPGGNKKTL 475
            + G    GKSAL   FL + F   Y P             GEQ ++ + D PG      
Sbjct: 3   AVLGASGVGKSALTVRFLTKRFIGEYEPNLESLYSRQVTIDGEQVSLEIQDTPG------ 56

Query: 476 ILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSW---KRTKELLVEVARLGEDSGY 532
             Q+  E+      S + +L   D  + VY  +D  S+    +  +L+ E+ +   +   
Sbjct: 57  --QQQNEDPE----SLERSLRWADGFVLVYSITDRSSFDVVSQLLQLIREIKKRDGE--- 107

Query: 533 GVPCLLIASKDDL 545
            +P +L+ +K DL
Sbjct: 108 -IPVILVGNKADL 119

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score = 40.6 bits (95), Expect = 6e-04
 Identities = 42/170 (24%), Positives = 63/170 (37%), Gaps = 30/170 (17%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLEN 72
           RVVV G  G GKSSL+      +  E  +P +    R           + I DT+ S + 
Sbjct: 3   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKSICTLQITDTTGSHQF 62

Query: 73  KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIK------VPIIVAGCKLD 126
                  + +  A +L Y+   + +L  L   +  EL   EIK      +PI++ G K D
Sbjct: 63  PAMQRLSISKGHAFILVYSITSKQSLEELKPIY--ELIC-EIKGNNLEKIPIMLVGNKCD 119

Query: 127 LRGDHNATSLEEVMGPIMQQFREIETC--------VECSATTMIQVPDVF 168
                  +   EV         E            +E SA T   V ++F
Sbjct: 120 ------ESPSREV------SSSEGAALARTWNCAFMETSAKTNHNVQELF 157

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score = 40.5 bits (95), Expect = 6e-04
 Identities = 39/161 (24%), Positives = 76/161 (47%), Gaps = 9/161 (5%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
           ++ ++ G    GKSAL   F++  F E+Y PT  + Y   V      + +   L+ +   
Sbjct: 2   YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEI----DGRQCDLEILDTA 57

Query: 484 GVKKILSNKEA-LASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASK 542
           G ++  + +E  + S    + VY  + E S     EL  +V R+ +     VP +L+ +K
Sbjct: 58  GTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSD--NVPMVLVGNK 115

Query: 543 DDLK-PYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNVF 581
            DL+    ++ +D   ++Q+ G  P    S + + +++ VF
Sbjct: 116 ADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVF 156

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|206722 cd04157, Arl6, Arf-like 6 (Arl6) GTPase

 Score = 40.5 bits (95), Expect = 7e-04
 Identities = 36/141 (25%), Positives = 53/141 (37%), Gaps = 13/141 (9%)

Query: 427 LLFGPQNAGKSALLNSFL-ERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV 485
           L+ G  N+GK+ ++N        S+N  PT G  + V         K  L        G 
Sbjct: 3   LVLGLDNSGKTTIINQLKPSNAQSQNIVPTVG--FNVESFK-----KGNLSFTAFDMSGQ 55

Query: 486 KKILSNKEALA-SCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDD 544
            K     E    +    IFV DSSD       K+ L  +    +     +P L  A+K D
Sbjct: 56  GKYRGLWEHYYKNIQGIIFVIDSSDRLRMVVAKDELELLLNHPDIKHRRIPILFYANKMD 115

Query: 545 LKPYTMAVQDSARVTQELGIE 565
           L         + ++TQ L +E
Sbjct: 116 LP----DALTAVKITQLLCLE 132

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 162

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score = 40.1 bits (94), Expect = 9e-04
 Identities = 39/162 (24%), Positives = 68/162 (41%), Gaps = 12/162 (7%)

Query: 13  VRVVVVGDRGTGKSSL-IAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLE 71
            +V++VG  G GKS+L +     E V +  P      R       + V + I+DT+   +
Sbjct: 1   HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQLNILDTAGQED 60

Query: 72  NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELR-RLEIKVPIIVAGCKLDLRGD 130
                +   +  +  +L ++     + + L+ +    LR + +  VP+++ G K DL  D
Sbjct: 61  YAAIRDNYFRSGEGFLLVFSITDMESFTALAEFREQILRVKEDDNVPLLLVGNKCDLE-D 119

Query: 131 HNATSLEEVMGPIMQ---QFREIETCVECSATTMIQVPDVFY 169
               S+EE      Q    +      VE SA T   V  VF+
Sbjct: 120 KRQVSVEEAANLAEQWGVNY------VETSAKTRANVDKVFF 155

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score = 41.0 bits (96), Expect = 9e-04
 Identities = 33/133 (24%), Positives = 53/133 (39%), Gaps = 9/133 (6%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDR---VPVTIIDTSSS 69
           ++VV++GD   GK+SL+         + V  V         FY  +     ++I DT+  
Sbjct: 1   LKVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGA------FYLKQWGPYNISIWDTAGR 54

Query: 70  LENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRG 129
            +  G  +   + A AV+LTY  +   +L  L   +L             V G KLDL  
Sbjct: 55  EQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTE 114

Query: 130 DHNATSLEEVMGP 142
           +      E+  G 
Sbjct: 115 EGALAGQEKDAGD 127

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family

 Score = 40.6 bits (95), Expect = 0.001
 Identities = 43/171 (25%), Positives = 67/171 (39%), Gaps = 33/171 (19%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEK----VPPVHAPTRLPPDFYPDRVPVTIIDTSSS 69
           R+V +G  G GK++LI     ++   K    V  +H       +    +V + I+DTS S
Sbjct: 1   RLVFMGAAGVGKTALIQRFLYDTFEPKHRRTVEELH---SKEYEVAGVKVTIDILDTSGS 57

Query: 70  LENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRR--LEIK----VPIIVAGC 123
                     ++  DA  L Y+ +   +   +       LR   LE+K    VPI+V G 
Sbjct: 58  YSFPAMRKLSIQNGDAFALVYSVDDPESFEEVKR-----LREEILEVKEDKFVPIVVVGN 112

Query: 124 KLDLRG-----DHNATSLEEVMGPIMQQFREIETC-VECSATTMIQVPDVF 168
           K+D          +A S  E+         +     VE SA     V +VF
Sbjct: 113 KIDSLAERQVEAADALSTVEL---------DWNNGFVEASAKDNENVTEVF 154

Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score = 39.8 bits (93), Expect = 0.001
 Identities = 43/168 (25%), Positives = 68/168 (40%), Gaps = 14/168 (8%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVP---PVHAPTRLPPDFYPDRVPVTIIDTSSSL 70
           + +++GD G GKS L+     +      P    V   TR+  +    ++ + I DT+   
Sbjct: 4   KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRI-IEVNGQKIKLQIWDTAGQE 62

Query: 71  ENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRG 129
             +       + A   ++ Y   ++ST + LSS WL + R L      I + G K DL  
Sbjct: 63  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSS-WLTDARNLTNPNTVIFLIGNKADLEA 121

Query: 130 DHNATSLEEVMGPIMQQFREIE--TCVECSATTMIQVPDVFYYAQKAV 175
             + T  E        QF +      +ECSA T   V D F    K +
Sbjct: 122 QRDVTYEEAK------QFADENGLLFLECSAKTGENVEDAFLETAKKI 163

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score = 40.5 bits (95), Expect = 0.001
 Identities = 33/126 (26%), Positives = 60/126 (47%), Gaps = 12/126 (9%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVN--VVDQPGGNKKTLILQEIP 481
           +R +L G    GKS+L N F    + ++    +G+        VD   G + TL++ +  
Sbjct: 1   YRVVLLGDSGVGKSSLANIFTAGVYEDSAYEASGDDTYERTVSVD---GEEATLVVYDHW 57

Query: 482 EEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEV--ARLGEDSGYGVPCLLI 539
           E+     L +   +   D  + VY  +D  S+++  EL +++  AR  ED    +P +L+
Sbjct: 58  EQEDGMWLED-SCMQVGDAYVIVYSVTDRSSFEKASELRIQLRRARQAED----IPIILV 112

Query: 540 ASKDDL 545
            +K DL
Sbjct: 113 GNKSDL 118

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

>gnl|CDD|206727 cd04164, trmE, trmE is a tRNA modification GTPase

 Score = 39.4 bits (93), Expect = 0.002
 Identities = 40/169 (23%), Positives = 69/169 (40%), Gaps = 37/169 (21%)

Query: 421 RNVFRCLLFGPQNAGKSALLNSFLERPFS--ENYAPTT-----------GEQYAVNVVDQ 467
           R   + ++ G  N GKS+LLN+   R  +   + A TT           G    V ++D 
Sbjct: 1   REGIKVVIAGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEEEIDLGG--IPVRLIDT 58

Query: 468 PGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLG 527
            G  +      EI + G+++    +EA+   D+ + V D+S+         L  E   + 
Sbjct: 59  AGLRETE---DEIEKIGIER---AREAIEEADLVLLVVDASE--------GLDEEDLEIL 104

Query: 528 EDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSKD 576
           E      P +++ +K DL          A    EL  +P I +S K+ +
Sbjct: 105 ELP-AKKPVIVVLNKSDLLS-------DAEGISELNGKPIIAISAKTGE 145

TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. Length = 159

>gnl|CDD|204242 pfam09439, SRPRB, Signal recognition particle receptor beta subunit

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 34/157 (21%), Positives = 61/157 (38%), Gaps = 11/157 (7%)

Query: 427 LLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIP--EEG 484
           ++ G  ++GK++L          +    T+ E  A        G   TLI  + P   + 
Sbjct: 7   IIAGLCDSGKTSLFTLLTTGTVKKTV--TSQEPSAAYKYMLHKGFSFTLI--DFPGHVKL 62

Query: 485 VKKILSNKEALASCDVTIFVYDSS-DEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKD 543
            +K+L   +  +S    +FV DS+        T E L E+  + E    G+  L+  +K 
Sbjct: 63  RQKLLETIKDSSSLRGIVFVVDSTAFPKEVTDTAEFLYEILSITELLKNGIDILIACNKQ 122

Query: 544 DLKPYTMAVQDSARVTQELGIEPPIPVSMKSKDLNNV 580
           +      A     ++ Q L  E       +SK L+ +
Sbjct: 123 ES---FTARPPK-KIKQALEKEINTIRERRSKALSGL 155

The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase which anchors the alpha subunit to the endoplasmic reticulum membrane. Length = 181

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score = 39.1 bits (91), Expect = 0.002
 Identities = 34/166 (20%), Positives = 81/166 (48%), Gaps = 11/166 (6%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNV-VDQPGGNKKTLILQEIPE 482
           ++ ++ G    GKSAL   F++  F + Y PT  + Y   + VD      +  +L+ +  
Sbjct: 2   YKLVVLGSGGVGKSALTVQFVQGIFVDKYDPTIEDSYRKQIEVDC-----QQCMLEILDT 56

Query: 483 EGVKKILSNKEA-LASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIAS 541
            G ++  + ++  + +      VY  + + S+   ++L  ++ R+ +     VP +L+ +
Sbjct: 57  AGTEQFTAMRDLYIKNGQGFALVYSITAQQSFNDLQDLREQILRVKDTE--DVPMILVGN 114

Query: 542 KDDLK-PYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNVFSRII 585
           K DL+    ++ ++   + ++ G  P +  S KSK +++ +F  ++
Sbjct: 115 KCDLEDERVVSKEEGQNLARQWGNCPFLETSAKSKINVDEIFYDLV 160

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score = 38.7 bits (90), Expect = 0.002
 Identities = 43/166 (25%), Positives = 70/166 (42%), Gaps = 24/166 (14%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYP-----DRVPVT--IIDT 66
           +VVV+G  G GKS+L     + +  EK  P         DFY      D  P    I+DT
Sbjct: 3   KVVVLGSGGVGKSALTVQFVSGTFIEKYDPT------IEDFYRKEIEVDSSPSVLEILDT 56

Query: 67  SSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSY--WLPELRRLEIKVPIIVAGCK 124
           + + +     +  +K     ++ Y+   Q T   +      +  ++  E KVPII+ G K
Sbjct: 57  AGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYE-KVPIILVGNK 115

Query: 125 LDLRGDHNATSLEEVMGPIMQQFREIETC--VECSATTMIQVPDVF 168
           +DL  +   +S E       +   E   C  +E SA +   V ++F
Sbjct: 116 VDLESEREVSSAEG------RALAEEWGCPFMETSAKSKTMVNELF 155

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score = 38.8 bits (91), Expect = 0.003
 Identities = 43/168 (25%), Positives = 65/168 (38%), Gaps = 26/168 (15%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFY-------PDRVPVTIID 65
           ++++++GD G GKSSL+     ++  E      + T +  DF          +V + I D
Sbjct: 1   LKILLIGDSGVGKSSLLLRFTDDTFDED----LSST-IGVDFKVKTVTVDGKKVKLAIWD 55

Query: 66  TSSSLENKGKLNEELKR-ADAVVLTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAG 122
           T+   E    L     R A  V+L Y   ++ T   L   WL EL           ++ G
Sbjct: 56  TAGQ-ERFRTLTSSYYRGAQGVILVYDVTRRDTFDNL-DTWLNELDTYSTNPDAVKMLVG 113

Query: 123 CKLDLRGDHNATSLEEVMGPIMQQFREIETC--VECSATTMIQVPDVF 168
            K+D           EV     Q+F        +E SA T I V   F
Sbjct: 114 NKIDKEN-------REVTREEGQKFARKHNMLFIETSAKTRIGVQQAF 154

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|223561 COG0486, ThdF, Predicted GTPase [General function prediction only]

 Score = 40.2 bits (95), Expect = 0.003
 Identities = 39/184 (21%), Positives = 71/184 (38%), Gaps = 44/184 (23%)

Query: 410 RSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFL--ERPFSENYAPTT----------- 456
            +  + K    R   + ++ G  N GKS+LLN+ L  +R    + A TT           
Sbjct: 206 ATAKQGKIL--REGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLN 263

Query: 457 GEQYAVNVVDQPGGNKKTLILQE----IPEEGVKKILSNKEALASCDVTIFVYDSSDEYS 512
           G    V +VD  G       ++E    +   G+++    K+A+   D+ +FV D+S    
Sbjct: 264 G--IPVRLVDTAG-------IRETDDVVERIGIER---AKKAIEEADLVLFVLDASQP-- 309

Query: 513 WKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSM 572
             +    L+E+           P +++ +K DL        +        G    I +S 
Sbjct: 310 LDKEDLALIELLPK------KKPIIVVLNKADLVS----KIELESEKLANGD-AIISISA 358

Query: 573 KSKD 576
           K+ +
Sbjct: 359 KTGE 362

Length = 454

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score = 38.3 bits (89), Expect = 0.004
 Identities = 36/153 (23%), Positives = 68/153 (44%), Gaps = 7/153 (4%)

Query: 435 GKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEA 494
           GK+ L+N F +  F +NY  T G  + +   +  G      +     +E  K I S    
Sbjct: 12  GKTCLINRFCKDVFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQERFKCIASTYYR 71

Query: 495 LASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP---YTMA 551
            A     I V+D +D  S + T++ L +  +  E+    V   L+ +K DL     Y + 
Sbjct: 72  GAQ--AIIIVFDLTDVASLEHTRQWLEDALK--ENDPSSVLLFLVGTKKDLSSPAQYALM 127

Query: 552 VQDSARVTQELGIEPPIPVSMKSKDLNNVFSRI 584
            QD+ ++ +E+  E     ++  +++ + F R+
Sbjct: 128 EQDAIKLAREMKAEYWAVSALTGENVRDFFFRV 160

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	643
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	100.0
COG1160	444	Predicted GTPases [General function prediction onl	100.0
PRK03003	472	GTP-binding protein Der; Reviewed	100.0
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	100.0
PRK00093	435	GTP-binding protein Der; Reviewed	100.0
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	100.0
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	99.97
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	99.96
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	99.96
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	99.96
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	99.95
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	99.95
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	99.95
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	99.95
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	99.95
KOG0394	210	consensus Ras-related GTPase [General function pre	99.95
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	99.94
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	99.94
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	99.94
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	99.94
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	99.94
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	99.94
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	99.94
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	99.94
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	99.94
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	99.94
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	99.94
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	99.94
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	99.94
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	99.93
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	99.93
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	99.93
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	99.93
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	99.93
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	99.93
KOG0394	210	consensus Ras-related GTPase [General function pre	99.93
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.93
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	99.93
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	99.93
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.93
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	99.93
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	99.93
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	99.93
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	99.93
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	99.93
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	99.93
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	99.93
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	99.93
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	99.93
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.92
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	99.92
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	99.92
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	99.92
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	99.92
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	99.92
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	99.92
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.92
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	99.92
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.92
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	99.92
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.92
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.92
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.92
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	99.92
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	99.92
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	99.92
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	99.92
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	99.92
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	99.92
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.92
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	99.92
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	99.92
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	99.92
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.92
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.92
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	99.92
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	99.92
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.92
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	99.91
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.91
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.91
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.91
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.91
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.91
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.91
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	99.91
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.91
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.91
PTZ00369	189	Ras-like protein; Provisional	99.91
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.91
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.91
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	99.91
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.91
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	99.91
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	99.91
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.91
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.91
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	99.91
PF08356	89	EF_assoc_2: EF hand associated; InterPro: IPR01356	99.91
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.91
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	99.91
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	99.91
PTZ00369	189	Ras-like protein; Provisional	99.91
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.91
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.91
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.91
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.91
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	99.91
PLN03110	216	Rab GTPase; Provisional	99.91
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	99.91
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	99.91
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.91
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.91
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.91
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.91
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	99.91
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.91
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.91
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.91
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.91
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.91
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	99.91
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.9
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	99.9
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	99.9
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	99.9
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	99.9
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.9
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	99.9
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	99.9
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.9
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	99.9
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.9
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.9
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.9
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.9
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.9
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.9
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	99.9
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.9
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.9
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.9
PLN03108	210	Rab family protein; Provisional	99.9
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.9
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	99.9
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.9
PLN03110	216	Rab GTPase; Provisional	99.9
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.9
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.9
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	99.9
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.9
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.9
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	99.9
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.9
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	99.9
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	99.89
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.89
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	99.89
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.89
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.89
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.89
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.89
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.89
PLN03118	211	Rab family protein; Provisional	99.89
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.89
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.89
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.89
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.89
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	99.89
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.89
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.89
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.89
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.89
PLN03118	211	Rab family protein; Provisional	99.89
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.89
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.89
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.88
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.88
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.88
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.88
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	99.88
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.88
PLN00223	181	ADP-ribosylation factor; Provisional	99.88
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.88
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.88
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.88
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.88
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.88
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.88
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.88
PLN03108	210	Rab family protein; Provisional	99.88
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.88
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.87
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.87
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.87
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.87
COG1159	298	Era GTPase [General function prediction only]	99.87
KOG0395	196	consensus Ras-related GTPase [General function pre	99.87
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.87
PTZ00133	182	ADP-ribosylation factor; Provisional	99.87
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.87
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.87
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.87
PLN00223	181	ADP-ribosylation factor; Provisional	99.87
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.87
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.87
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.87
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.87
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.86
PTZ00133	182	ADP-ribosylation factor; Provisional	99.86
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.86
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.86
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.86
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.86
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.86
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.86
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.86
KOG0395	196	consensus Ras-related GTPase [General function pre	99.86
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.86
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.86
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.86
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.86
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.86
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.86
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.86
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.85
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	99.85
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.85
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.85
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.85
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.85
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.85
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.85
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	99.85
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.84
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	99.84
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.84
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	99.84
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.84
COG0486	454	ThdF Predicted GTPase [General function prediction	99.84
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	99.84
COG0486	454	ThdF Predicted GTPase [General function prediction	99.84
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.84
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.84
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.84
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.83
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.83
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.83
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.83
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.83
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.83
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.83
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.83
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.83
PRK15494	339	era GTPase Era; Provisional	99.83
COG1159	298	Era GTPase [General function prediction only]	99.83
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.82
PRK15494	339	era GTPase Era; Provisional	99.82
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.82
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.82
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.82
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.82
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.82
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.81
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.81
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.81
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.81
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.81
PLN00023	334	GTP-binding protein; Provisional	99.81
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.81
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.81
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.81
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.8
COG1160	444	Predicted GTPases [General function prediction onl	99.8
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.8
PRK00089	292	era GTPase Era; Reviewed	99.8
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.8
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.8
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.8
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.8
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.8
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.8
PRK12298	390	obgE GTPase CgtA; Reviewed	99.79
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.79
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.79
PRK12299	335	obgE GTPase CgtA; Reviewed	99.79
PRK12299	335	obgE GTPase CgtA; Reviewed	99.79
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.79
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.79
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.78
PRK11058	426	GTPase HflX; Provisional	99.78
PLN00023	334	GTP-binding protein; Provisional	99.77
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.77
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.77
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.77
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.77
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.77
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.76
COG1100	219	GTPase SAR1 and related small G proteins [General	99.76
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.76
PRK00089	292	era GTPase Era; Reviewed	99.76
cd00881	189	GTP_translation_factor GTP translation factor fami	99.76
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.76
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.76
PRK12298	390	obgE GTPase CgtA; Reviewed	99.76
PTZ00099	176	rab6; Provisional	99.76
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.75
PRK03003	472	GTP-binding protein Der; Reviewed	99.75
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.75
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.75
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.75
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.75
PRK04213	201	GTP-binding protein; Provisional	99.75
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.74
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.74
PRK12296	500	obgE GTPase CgtA; Reviewed	99.74
cd00881	189	GTP_translation_factor GTP translation factor fami	99.73
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.73
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.73
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.73
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.73
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.73
PRK12297	424	obgE GTPase CgtA; Reviewed	99.73
COG1100	219	GTPase SAR1 and related small G proteins [General	99.72
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.72
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.72
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.72
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.72
PRK12297	424	obgE GTPase CgtA; Reviewed	99.72
PRK04213	201	GTP-binding protein; Provisional	99.72
KOG3883	198	consensus Ras family small GTPase [Signal transduc	99.72
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.72
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.72
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.72
PRK11058	426	GTPase HflX; Provisional	99.72
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.72
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.72
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.71
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.71
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.71
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.71
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.71
PTZ00099	176	rab6; Provisional	99.71
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.71
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.71
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.7
PRK00093	435	GTP-binding protein Der; Reviewed	99.7
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.7
COG2262	411	HflX GTPases [General function prediction only]	99.69
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.69
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.69
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.69
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.69
PRK12296	500	obgE GTPase CgtA; Reviewed	99.69
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	99.69
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.68
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.68
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.68
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.68
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.68
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.68
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.67
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.67
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.67
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.66
CHL00189	742	infB translation initiation factor 2; Provisional	99.66
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.66
PRK05306	787	infB translation initiation factor IF-2; Validated	99.66
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.66
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.65
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.64
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	99.64
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.64
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.64
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.64
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	99.64
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.64
COG0218	200	Predicted GTPase [General function prediction only	99.63
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.63
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.63
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	99.63
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.63
CHL00189	742	infB translation initiation factor 2; Provisional	99.63
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.63
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.63
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.63
KOG1673	205	consensus Ras GTPases [General function prediction	99.63
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.62
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.62
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.62
PRK05306	787	infB translation initiation factor IF-2; Validated	99.61
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.6
PRK12317	425	elongation factor 1-alpha; Reviewed	99.6
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.6
COG0218	200	Predicted GTPase [General function prediction only	99.6
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.6
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.59
KOG1673	205	consensus Ras GTPases [General function prediction	99.59
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.58
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.58
KOG3883	198	consensus Ras family small GTPase [Signal transduc	99.58
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.58
PRK05433	600	GTP-binding protein LepA; Provisional	99.58
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.57
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.57
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.57
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.57
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.57
PRK05433	600	GTP-binding protein LepA; Provisional	99.57
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.57
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	99.57
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.57
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.56
PRK10218	607	GTP-binding protein; Provisional	99.56
PRK00007	693	elongation factor G; Reviewed	99.55
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.55
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.55
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.55
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.54
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.54
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.54
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.54
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.53
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.53
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	99.53
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.53
PRK04004	586	translation initiation factor IF-2; Validated	99.52
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.52
PRK12317	425	elongation factor 1-alpha; Reviewed	99.52
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.52
PF08355	76	EF_assoc_1: EF hand associated; InterPro: IPR01356	99.52
COG2262	411	HflX GTPases [General function prediction only]	99.51
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.51
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.5
PRK12736	394	elongation factor Tu; Reviewed	99.5
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.5
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.49
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.49
COG2229	187	Predicted GTPase [General function prediction only	99.49
CHL00071	409	tufA elongation factor Tu	99.49
PRK12736	394	elongation factor Tu; Reviewed	99.49
PRK04004	586	translation initiation factor IF-2; Validated	99.49
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.49
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.49
PRK12735	396	elongation factor Tu; Reviewed	99.48
PRK12735	396	elongation factor Tu; Reviewed	99.48
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.48
COG1084	346	Predicted GTPase [General function prediction only	99.48
COG1163	365	DRG Predicted GTPase [General function prediction	99.48
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.48
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	99.47
CHL00071	409	tufA elongation factor Tu	99.47
PRK10218	607	GTP-binding protein; Provisional	99.47
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	99.47
COG1084	346	Predicted GTPase [General function prediction only	99.47
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.47
PRK12739	691	elongation factor G; Reviewed	99.47
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.46
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.46
COG3596	296	Predicted GTPase [General function prediction only	99.46
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.46
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.46
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	99.46
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.45
PRK13351	687	elongation factor G; Reviewed	99.45
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.45
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.45
COG0536	369	Obg Predicted GTPase [General function prediction	99.44
PRK12289	352	GTPase RsgA; Reviewed	99.43
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	99.43
COG0536	369	Obg Predicted GTPase [General function prediction	99.43
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.42
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.42
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.42
PRK00049	396	elongation factor Tu; Reviewed	99.42
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.42
PLN03126	478	Elongation factor Tu; Provisional	99.41
COG2229	187	Predicted GTPase [General function prediction only	99.41
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.41
PLN03127	447	Elongation factor Tu; Provisional	99.41
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.4
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.4
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.39
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.39
PRK00049	396	elongation factor Tu; Reviewed	99.39
PLN03126	478	Elongation factor Tu; Provisional	99.39
PRK09866	741	hypothetical protein; Provisional	99.38
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.38
PLN03127	447	Elongation factor Tu; Provisional	99.38
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.38
PRK09602	396	translation-associated GTPase; Reviewed	99.37
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.37
PRK12288	347	GTPase RsgA; Reviewed	99.37
PRK09602	396	translation-associated GTPase; Reviewed	99.36
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.36
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.36
PRK09866	741	hypothetical protein; Provisional	99.35
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.34
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.34
PLN00043	447	elongation factor 1-alpha; Provisional	99.33

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=100.00  E-value=1.5e-95  Score=743.39  Aligned_cols=615  Identities=50%  Similarity=0.828  Sum_probs=561.9

Q ss_pred             CCCCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCE
Q 006490            6 GSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADA   85 (643)
Q Consensus         6 ~~~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~   85 (643)
                      +...+..+||+|+|+.|||||||+-+|+...|+.+.|+......++.++..+.+...|+||+..++........+++||+
T Consensus         3 ~~~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~v   82 (625)
T KOG1707|consen    3 DDETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADV   82 (625)
T ss_pred             CccCccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCE
Confidence            45678889999999999999999999999999999999999999999999999999999999877766677788999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHhcC---CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCC
Q 006490           86 VVLTYACNQQSTLSRLSSYWLPELRRLE---IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMI  162 (643)
Q Consensus        86 il~v~d~~~~~s~~~~~~~~~~~l~~~~---~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  162 (643)
                      +++||+++++.+++.+..+|++.+++.+   .++||||||||+|+...... +.+..+..++.+|.+++.|++|||++..
T Consensus        83 i~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~-s~e~~~~pim~~f~EiEtciecSA~~~~  161 (625)
T KOG1707|consen   83 ICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENN-SDEVNTLPIMIAFAEIETCIECSALTLA  161 (625)
T ss_pred             EEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCcccccc-chhHHHHHHHHHhHHHHHHHhhhhhhhh
Confidence            9999999999999999999999999987   78999999999999887665 5555689999999999999999999999


Q ss_pred             ChhHHHHHHHHHHhCCCCCCCccccccchHHHHHHHHhhhhhcCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHH
Q 006490          163 QVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVV  242 (643)
Q Consensus       163 gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~~  242 (643)
                      ++.++|+.++++++++..|+|+...++.++.|.++|.|+|.++|.++|+.|+++|++.+|.+||+.++...+++.++.++
T Consensus       162 n~~e~fYyaqKaVihPt~PLyda~~qelkp~~v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv  241 (625)
T KOG1707|consen  162 NVSELFYYAQKAVIHPTSPLYDAEEQELKPRCVKALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVV  241 (625)
T ss_pred             hhHhhhhhhhheeeccCccccccccccccHHHHHHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhccCCcCCCCcChhhHHHHHHHHHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhh
Q 006490          243 QEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIF  322 (643)
Q Consensus       243 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f  322 (643)
                      ++..|.|+...++|+.|||+|+.+|+++||+|++|++||+|||+|.|+|.++++|..+.++|++++|||+.|++||..+|
T Consensus       242 ~e~~p~gv~~~~ltl~GFLfL~~lfiergr~EttW~iLR~fgY~DsleL~~~~l~p~~~~~p~~s~ELs~~~~~Fl~~~f  321 (625)
T KOG1707|consen  242 QEICPDGVYERGLTLPGFLFLNTLFIERGRHETTWTILRKFGYTDSLELTDEYLPPRLKVPPDQSVELSPKGYRFLVDVF  321 (625)
T ss_pred             HhhcCchhhhccccccchHHHHHHHHHhccccchhhhhhhcCCcchhhhhhhhcCccccCCCCcceeccHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999944999999999999999999999999


Q ss_pred             hhhcCCCCCCCChhHHhhhhccCCCCCCCCCCCCCCccccCCcccchhhhhhhhhhhhccCHHHHHHHHHHhcCCCC---
Q 006490          323 GLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGGD---  399 (643)
Q Consensus       323 ~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~l~~~g~~~~---  399 (643)
                      ++||.|+||.|++.|+..+|+++|+.||....++...+.+.+|++++++|+++|+|+|++++..++++|.|+||+..   
T Consensus       322 ~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~~~~~t~~~~~G~ltl~g~l~~WsL~Tlld~~~t~~~L~Ylgf~~~~~~  401 (625)
T KOG1707|consen  322 EKFDRDNDGALSPEELKDLFSTAPGSPWTSSPYKDSTVKNERGWLTLNGFLSQWSLMTLLDPRRTLEYLAYLGFPTDAGS  401 (625)
T ss_pred             HhccCCCCCCcCHHHHHHHhhhCCCCCCCCCcccccceecccceeehhhHHHHHHHHhhccHHHHHHHHHhcCCcccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999976   


Q ss_pred             ccccchhccchhhhhhhccccCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEec
Q 006490          400 PAAALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQE  479 (643)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~  479 (643)
                      +..+++++++|+.++++++..|+++++.++|+.|+|||.|++.++|+.+...+..++...+.++.+... +..+++++..
T Consensus       402 ~~~ai~vtRkr~~d~~~~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~-g~~k~LiL~e  480 (625)
T KOG1707|consen  402 QASAIRVTRKRKLDRKKKQTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVK-GQQKYLILRE  480 (625)
T ss_pred             cccceehhhhhhhhhccccccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeec-cccceEEEee
Confidence            899999999999999899999999999999999999999999999999888555788888999999999 6788888888


Q ss_pred             CCchhhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHH
Q 006490          480 IPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARV  558 (643)
Q Consensus       480 ~g~~~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~  558 (643)
                      +|......+  .... ..||+++++||.+++.+|+.....+..-... .    ..||++|+.|+|+.+..+. .....++
T Consensus       481 i~~~~~~~l--~~ke-~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~-~----~~Pc~~va~K~dlDe~~Q~~~iqpde~  552 (625)
T KOG1707|consen  481 IGEDDQDFL--TSKE-AACDVACLVYDSSNPRSFEYLAEVYNKYFDL-Y----KIPCLMVATKADLDEVPQRYSIQPDEF  552 (625)
T ss_pred             cCccccccc--cCcc-ceeeeEEEecccCCchHHHHHHHHHHHhhhc-c----CCceEEEeeccccchhhhccCCChHHH
Confidence            876433223  2222 8899999999999999999887765543332 1    8999999999999876544 3445999


Q ss_pred             HHHhCCCCcEEeeeccC-CHHHHHHHHHHHHhCCCCCCCCcccccchhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHH
Q 006490          559 TQELGIEPPIPVSMKSK-DLNNVFSRIIWAAEHPHLNIPETETGRNRKRYRHLVNSSLVFVSVGAAVAVVGLAAYRAYAA  637 (643)
Q Consensus       559 ~~~~~~~~~~~vSa~~g-~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~  637 (643)
                      ++++++++.+.+|.++. . .++|..|...+..|+  +++.+.....     ..++.+...+.| ++.+.|++.|+.++.
T Consensus       553 ~~~~~i~~P~~~S~~~~~s-~~lf~kL~~~A~~Ph--~~~~~~~~~~-----~~~~~l~~~~~g-~~~~~g~~~~~~~~~  623 (625)
T KOG1707|consen  553 CRQLGLPPPIHISSKTLSS-NELFIKLATMAQYPH--IPRIEEEKSS-----LQNRLLMAVSGG-AVAVAGLALYKLYKA  623 (625)
T ss_pred             HHhcCCCCCeeeccCCCCC-chHHHHHHHhhhCCC--ccccccccch-----hhHHHHHHHHHH-HHHHhhHHHHhhhhc
Confidence            99999999999999965 6 899999999999888  6666555333     577788788888 899999999999987


Q ss_pred             Hh
Q 006490          638 RR  639 (643)
Q Consensus       638 ~~  639 (643)
                      +|
T Consensus       624 ~k  625 (625)
T KOG1707|consen  624 RK  625 (625)
T ss_pred             cC
Confidence            64

>COG1160 Predicted GTPases [General function prediction only]

Probab=100.00  E-value=7.8e-46  Score=374.71  Aligned_cols=330  Identities=19%  Similarity=0.176  Sum_probs=249.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCC--CCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcch---------hhhHHhhc
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATES--VPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENK---------GKLNEELK   81 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---------~~~~~~~~   81 (643)
                      ..|+|||+||||||||||||++.+  ++++.||++ +.+++....+.+..|.++||+|++...         .+...++.
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvT-RDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~   82 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVT-RDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIE   82 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCc-cCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHH
Confidence            569999999999999999999998  677788844 334666777888889999999998432         23347899


Q ss_pred             cCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccC
Q 006490           82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM  161 (643)
Q Consensus        82 ~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  161 (643)
                      +||++|||+|.....+..  +..+.+.+++.  ++|+|||+||+|....     .....+.+...++   .++++||.||
T Consensus        83 eADvilfvVD~~~Git~~--D~~ia~~Lr~~--~kpviLvvNK~D~~~~-----e~~~~efyslG~g---~~~~ISA~Hg  150 (444)
T COG1160          83 EADVILFVVDGREGITPA--DEEIAKILRRS--KKPVILVVNKIDNLKA-----EELAYEFYSLGFG---EPVPISAEHG  150 (444)
T ss_pred             hCCEEEEEEeCCCCCCHH--HHHHHHHHHhc--CCCEEEEEEcccCchh-----hhhHHHHHhcCCC---CceEeehhhc
Confidence            999999999966554444  44688888865  7999999999998742     2333455555555   5899999999


Q ss_pred             CChhHHHHHHHHHHhCCCCCCCccccccchHHHHHHHHhhhhhcCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHH
Q 006490          162 IQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRV  241 (643)
Q Consensus       162 ~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~  241 (643)
                      .|+.+|++.+...+. +...                                                            
T Consensus       151 ~Gi~dLld~v~~~l~-~~e~------------------------------------------------------------  169 (444)
T COG1160         151 RGIGDLLDAVLELLP-PDEE------------------------------------------------------------  169 (444)
T ss_pred             cCHHHHHHHHHhhcC-Cccc------------------------------------------------------------
Confidence            999999998776542 1000                                                            


Q ss_pred             HHhhccCCcCCCCcChhhHHHHHHHHHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHh
Q 006490          242 VQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGI  321 (643)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~  321 (643)
                                                                            .+                        
T Consensus       170 ------------------------------------------------------~~------------------------  171 (444)
T COG1160         170 ------------------------------------------------------EE------------------------  171 (444)
T ss_pred             ------------------------------------------------------cc------------------------
Confidence                                                                  00                        


Q ss_pred             hhhhcCCCCCCCChhHHhhhhccCCCCCCCCCCCCCCccccCCcccchhhhhhhhhhhhccCHHHHHHHHHHhcCCCCcc
Q 006490          322 FGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGGDPA  401 (643)
Q Consensus       322 f~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~l~~~g~~~~~~  401 (643)
                                                                                                      
T Consensus       172 --------------------------------------------------------------------------------  171 (444)
T COG1160         172 --------------------------------------------------------------------------------  171 (444)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccchhccchhhhhhhccccCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-C-CcccceEEEEEEcCCCcEEEEEEec
Q 006490          402 AALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-P-TTGEQYAVNVVDQPGGNKKTLILQE  479 (643)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~-~-t~~~~~~~~~v~~~g~~~~~~i~d~  479 (643)
                                     ......++||+|+|+||||||||+|+|+++++.++++ + ||++ .....++..  .+++.++||
T Consensus       172 ---------------~~~~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD-~I~~~~e~~--~~~~~liDT  233 (444)
T COG1160         172 ---------------EEEETDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRD-SIDIEFERD--GRKYVLIDT  233 (444)
T ss_pred             ---------------ccccCCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCcccc-ceeeeEEEC--CeEEEEEEC
Confidence                           0000246899999999999999999999999999998 4 5555 333334443  456777899


Q ss_pred             CCch---------hhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccc
Q 006490          480 IPEE---------GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM  550 (643)
Q Consensus       480 ~g~~---------~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~  550 (643)
                      +|-.         +..+..++..++..||++++|+|++++.+ ++..+....+.+.      ++++|+|+||||+.++..
T Consensus       234 AGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~-~qD~~ia~~i~~~------g~~~vIvvNKWDl~~~~~  306 (444)
T COG1160         234 AGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGIS-EQDLRIAGLIEEA------GRGIVIVVNKWDLVEEDE  306 (444)
T ss_pred             CCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCch-HHHHHHHHHHHHc------CCCeEEEEEccccCCchh
Confidence            8821         33345678899999999999999999987 5556666666665      899999999999987521


Q ss_pred             --c---HHHHHHHHHHhCCCCcEEeeeccC-CHHHHHHHHHHHHhCCCCCCCCcc
Q 006490          551 --A---VQDSARVTQELGIEPPIPVSMKSK-DLNNVFSRIIWAAEHPHLNIPETE  599 (643)
Q Consensus       551 --~---~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l~~~l~~~~~~~~~~~~~~~  599 (643)
                        .   .+.++.....+++.|++++||++| |+.++|+.+.+.+..+..+++...
T Consensus       307 ~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~~~~~ri~Ts~  361 (444)
T COG1160         307 ATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEIYECATRRISTSL  361 (444)
T ss_pred             hHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHHHHHHhccccCHHH
Confidence              1   334445555566778999999999 999999999999988877766543

>PRK03003 GTP-binding protein Der; Reviewed

Probab=100.00  E-value=8.7e-40  Score=352.97  Aligned_cols=330  Identities=22%  Similarity=0.176  Sum_probs=228.9

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCC--CCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCc--------chhhhHHhh
Q 006490           11 TGVRVVVVGDRGTGKSSLIAAAATESV--PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLE--------NKGKLNEEL   80 (643)
Q Consensus        11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~--------~~~~~~~~~   80 (643)
                      +..+|+|+|+||||||||+|+|++...  +...++++ .......+...+..+.+|||||++.        +...+..++
T Consensus        37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT-~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~  115 (472)
T PRK03003         37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVT-RDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAM  115 (472)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCC-EeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHH
Confidence            346899999999999999999998774  33344422 1223334455677899999999863        223345678


Q ss_pred             ccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCccc
Q 006490           81 KRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATT  160 (643)
Q Consensus        81 ~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  160 (643)
                      +.||++|+|+|+++..+...  ..|...++..  ++|+++|+||+|+.....     +..+.+...++   .+++|||++
T Consensus       116 ~~aD~il~VvD~~~~~s~~~--~~i~~~l~~~--~~piilV~NK~Dl~~~~~-----~~~~~~~~g~~---~~~~iSA~~  183 (472)
T PRK03003        116 RTADAVLFVVDATVGATATD--EAVARVLRRS--GKPVILAANKVDDERGEA-----DAAALWSLGLG---EPHPVSALH  183 (472)
T ss_pred             HhCCEEEEEEECCCCCCHHH--HHHHHHHHHc--CCCEEEEEECccCCccch-----hhHHHHhcCCC---CeEEEEcCC
Confidence            99999999999998876654  2477777765  899999999999864311     11222333333   468999999


Q ss_pred             CCChhHHHHHHHHHHhCCCCCCCccccccchHHHHHHHHhhhhhcCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHH
Q 006490          161 MIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKR  240 (643)
Q Consensus       161 ~~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~  240 (643)
                      |.|++++++++...+......                                                           
T Consensus       184 g~gi~eL~~~i~~~l~~~~~~-----------------------------------------------------------  204 (472)
T PRK03003        184 GRGVGDLLDAVLAALPEVPRV-----------------------------------------------------------  204 (472)
T ss_pred             CCCcHHHHHHHHhhccccccc-----------------------------------------------------------
Confidence            999999999876553210000                                                           


Q ss_pred             HHHhhccCCcCCCCcChhhHHHHHHHHHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHH
Q 006490          241 VVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRG  320 (643)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~  320 (643)
                                                                                                      
T Consensus       205 --------------------------------------------------------------------------------  204 (472)
T PRK03003        205 --------------------------------------------------------------------------------  204 (472)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhhcCCCCCCCChhHHhhhhccCCCCCCCCCCCCCCccccCCcccchhhhhhhhhhhhccCHHHHHHHHHHhcCCCCc
Q 006490          321 IFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGGDP  400 (643)
Q Consensus       321 ~f~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~l~~~g~~~~~  400 (643)
                                                                                                      
T Consensus       205 --------------------------------------------------------------------------------  204 (472)
T PRK03003        205 --------------------------------------------------------------------------------  204 (472)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccchhccchhhhhhhccccCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCcEEEEEEec
Q 006490          401 AAALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQE  479 (643)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~-~t~~~~~~~~~v~~~g~~~~~~i~d~  479 (643)
                                      .......++|+|+|+||||||||+|+|++.++..++. ++++.+.....+...|  ..+.+|||
T Consensus       205 ----------------~~~~~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~--~~~~l~DT  266 (472)
T PRK03003        205 ----------------GSASGGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGG--KTWRFVDT  266 (472)
T ss_pred             ----------------ccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECC--EEEEEEEC
Confidence                            0000124799999999999999999999998765444 4444444444455553  34568999


Q ss_pred             CCc----------hhhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcc
Q 006490          480 IPE----------EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT  549 (643)
Q Consensus       480 ~g~----------~~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~  549 (643)
                      +|.          +.+.. .++..+++.||++++|+|++++.+++.. .++..+...      ++|+|+|+||+|+....
T Consensus       267 aG~~~~~~~~~~~e~~~~-~~~~~~i~~ad~vilV~Da~~~~s~~~~-~~~~~~~~~------~~piIiV~NK~Dl~~~~  338 (472)
T PRK03003        267 AGLRRRVKQASGHEYYAS-LRTHAAIEAAEVAVVLIDASEPISEQDQ-RVLSMVIEA------GRALVLAFNKWDLVDED  338 (472)
T ss_pred             CCccccccccchHHHHHH-HHHHHHHhcCCEEEEEEeCCCCCCHHHH-HHHHHHHHc------CCCEEEEEECcccCChh
Confidence            994          22222 2245578999999999999999887765 344444433      89999999999997532


Q ss_pred             ccHHHHHHHHHH---hCCCCcEEeeeccC-CHHHHHHHHHHHHhCCCCCCCCc
Q 006490          550 MAVQDSARVTQE---LGIEPPIPVSMKSK-DLNNVFSRIIWAAEHPHLNIPET  598 (643)
Q Consensus       550 ~~~~~~~~~~~~---~~~~~~~~vSa~~g-~i~~l~~~l~~~~~~~~~~~~~~  598 (643)
                      .......++.+.   ..+.+++++||++| |++++|+.+.+.+..+..+++..
T Consensus       339 ~~~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~~i~~~~~~~~~~i~t~  391 (472)
T PRK03003        339 RRYYLEREIDRELAQVPWAPRVNISAKTGRAVDKLVPALETALESWDTRIPTG  391 (472)
T ss_pred             HHHHHHHHHHHhcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhcccCCHH
Confidence            211112222222   34456899999999 99999999999998777776544

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=100.00  E-value=1.4e-37  Score=335.07  Aligned_cols=326  Identities=18%  Similarity=0.194  Sum_probs=225.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC--CCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCc--------chhhhHHhhccC
Q 006490           14 RVVVVGDRGTGKSSLIAAAATES--VPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLE--------NKGKLNEELKRA   83 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~--------~~~~~~~~~~~a   83 (643)
                      +|+|+|+||||||||+|+|++..  ++.+.++++.. +....+...+..+.+|||||+..        +......+++.+
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d-~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~a   79 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRD-RKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEA   79 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccC-ceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhC
Confidence            58999999999999999999977  34455553322 23334455677899999999743        223445678999


Q ss_pred             CEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCC
Q 006490           84 DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQ  163 (643)
Q Consensus        84 d~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  163 (643)
                      |++++|+|+.+..+....  .+..++++.  ++|+++|+||+|+......  .    .+ ...++ +..++++||++|.|
T Consensus        80 d~vl~vvD~~~~~~~~d~--~i~~~l~~~--~~piilVvNK~D~~~~~~~--~----~~-~~~lg-~~~~~~vSa~~g~g  147 (429)
T TIGR03594        80 DVILFVVDGREGLTPEDE--EIAKWLRKS--GKPVILVANKIDGKKEDAV--A----AE-FYSLG-FGEPIPISAEHGRG  147 (429)
T ss_pred             CEEEEEEeCCCCCCHHHH--HHHHHHHHh--CCCEEEEEECccCCccccc--H----HH-HHhcC-CCCeEEEeCCcCCC
Confidence            999999998876554442  467777776  8999999999998754322  1    11 12333 33689999999999


Q ss_pred             hhHHHHHHHHHHhCCCCCCCccccccchHHHHHHHHhhhhhcCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHH
Q 006490          164 VPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQ  243 (643)
Q Consensus       164 i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~~~  243 (643)
                      ++++++.+.+.+.....                                                               
T Consensus       148 v~~ll~~i~~~l~~~~~---------------------------------------------------------------  164 (429)
T TIGR03594       148 IGDLLDAILELLPEEEE---------------------------------------------------------------  164 (429)
T ss_pred             hHHHHHHHHHhcCcccc---------------------------------------------------------------
Confidence            99999876544211000                                                               


Q ss_pred             hhccCCcCCCCcChhhHHHHHHHHHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhh
Q 006490          244 EKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFG  323 (643)
Q Consensus       244 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~  323 (643)
                                                                           +                          
T Consensus       165 -----------------------------------------------------~--------------------------  165 (429)
T TIGR03594       165 -----------------------------------------------------E--------------------------  165 (429)
T ss_pred             -----------------------------------------------------c--------------------------
Confidence                                                                 0                          


Q ss_pred             hhcCCCCCCCChhHHhhhhccCCCCCCCCCCCCCCccccCCcccchhhhhhhhhhhhccCHHHHHHHHHHhcCCCCcccc
Q 006490          324 LYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGGDPAAA  403 (643)
Q Consensus       324 ~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~l~~~g~~~~~~~~  403 (643)
                                                                                                      
T Consensus       166 --------------------------------------------------------------------------------  165 (429)
T TIGR03594       166 --------------------------------------------------------------------------------  165 (429)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             chhccchhhhhhhccccCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-C-CcccceEEEEEEcCCCcEEEEEEecCC
Q 006490          404 LRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-P-TTGEQYAVNVVDQPGGNKKTLILQEIP  481 (643)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~-~-t~~~~~~~~~v~~~g~~~~~~i~d~~g  481 (643)
                                   .......++|+++|.+|+|||||+|+|++.++..+++ + |+.+ .....+...|  ..+.+|||+|
T Consensus       166 -------------~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~-~~~~~~~~~~--~~~~liDT~G  229 (429)
T TIGR03594       166 -------------EEEEDGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRD-SIDIPFERNG--KKYLLIDTAG  229 (429)
T ss_pred             -------------ccccCCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceEC-cEeEEEEECC--cEEEEEECCC
Confidence                         0001134799999999999999999999988765554 3 4433 3333344442  3677899999


Q ss_pred             chhhh---------hhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcc-cc
Q 006490          482 EEGVK---------KILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MA  551 (643)
Q Consensus       482 ~~~~~---------~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~-~~  551 (643)
                      .....         ...++..+++.||++++|+|++++.+.+.. .++..+...      ++|+++|+||+|+.... ..
T Consensus       230 ~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~-~~~~~~~~~------~~~iiiv~NK~Dl~~~~~~~  302 (429)
T TIGR03594       230 IRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDL-RIAGLILEA------GKALVIVVNKWDLVKDEKTR  302 (429)
T ss_pred             ccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHH-HHHHHHHHc------CCcEEEEEECcccCCCHHHH
Confidence            53321         123345678999999999999998775543 344444443      79999999999998322 22


Q ss_pred             HHHHHHHHHHh---CCCCcEEeeeccC-CHHHHHHHHHHHHhCCCCCCCC
Q 006490          552 VQDSARVTQEL---GIEPPIPVSMKSK-DLNNVFSRIIWAAEHPHLNIPE  597 (643)
Q Consensus       552 ~~~~~~~~~~~---~~~~~~~vSa~~g-~i~~l~~~l~~~~~~~~~~~~~  597 (643)
                      .+..+.+...+   +..+++++||++| |++++|+++.+.+..+..+++.
T Consensus       303 ~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~~~~~~i~t  352 (429)
T TIGR03594       303 EEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEVYENANRRIST  352 (429)
T ss_pred             HHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHHHHHHHhcCcCCH
Confidence            23333333333   3346999999999 9999999999988766655543

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=100.00  E-value=1.7e-36  Score=326.77  Aligned_cols=326  Identities=16%  Similarity=0.149  Sum_probs=221.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCC--CCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCc--------chhhhHHhhcc
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATESV--PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLE--------NKGKLNEELKR   82 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~--------~~~~~~~~~~~   82 (643)
                      .+|+|+|++|||||||+|+|++...  +.+.++++.. .........+..+.+|||||+..        .......+++.
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d-~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~   80 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRD-RIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEE   80 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCccc-ceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence            4799999999999999999998873  4445553322 22233445568899999999986        22234467899


Q ss_pred             CCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCC
Q 006490           83 ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMI  162 (643)
Q Consensus        83 ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  162 (643)
                      +|++|+|+|++++.+....  .+..++++.  ++|+++|+||+|+....      +...++ ..++ +..++++||++|.
T Consensus        81 ad~il~vvd~~~~~~~~~~--~~~~~l~~~--~~piilv~NK~D~~~~~------~~~~~~-~~lg-~~~~~~iSa~~g~  148 (435)
T PRK00093         81 ADVILFVVDGRAGLTPADE--EIAKILRKS--NKPVILVVNKVDGPDEE------ADAYEF-YSLG-LGEPYPISAEHGR  148 (435)
T ss_pred             CCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCcEEEEEECccCccch------hhHHHH-HhcC-CCCCEEEEeeCCC
Confidence            9999999998876554432  355566665  89999999999975421      111111 2233 2358999999999


Q ss_pred             ChhHHHHHHHHHHhCCCCCCCccccccchHHHHHHHHhhhhhcCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHH
Q 006490          163 QVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVV  242 (643)
Q Consensus       163 gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~~  242 (643)
                      |++++++.+.......                           +                                    
T Consensus       149 gv~~l~~~I~~~~~~~---------------------------~------------------------------------  165 (435)
T PRK00093        149 GIGDLLDAILEELPEE---------------------------E------------------------------------  165 (435)
T ss_pred             CHHHHHHHHHhhCCcc---------------------------c------------------------------------
Confidence            9999998765410000                           0                                    


Q ss_pred             HhhccCCcCCCCcChhhHHHHHHHHHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhh
Q 006490          243 QEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIF  322 (643)
Q Consensus       243 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f  322 (643)
                                                                           ..                         
T Consensus       166 -----------------------------------------------------~~-------------------------  167 (435)
T PRK00093        166 -----------------------------------------------------EE-------------------------  167 (435)
T ss_pred             -----------------------------------------------------cc-------------------------
Confidence                                                                 00                         


Q ss_pred             hhhcCCCCCCCChhHHhhhhccCCCCCCCCCCCCCCccccCCcccchhhhhhhhhhhhccCHHHHHHHHHHhcCCCCccc
Q 006490          323 GLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGGDPAA  402 (643)
Q Consensus       323 ~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~l~~~g~~~~~~~  402 (643)
                                                                                                      
T Consensus       168 --------------------------------------------------------------------------------  167 (435)
T PRK00093        168 --------------------------------------------------------------------------------  167 (435)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cchhccchhhhhhhccccCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCcEEEEEEecCC
Q 006490          403 ALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIP  481 (643)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~-~t~~~~~~~~~v~~~g~~~~~~i~d~~g  481 (643)
                                     ......++|+|+|++|+|||||+|+|++.++..+++ +.++.+.....+...  ...+.++||+|
T Consensus       168 ---------------~~~~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~--~~~~~lvDT~G  230 (435)
T PRK00093        168 ---------------DEEDEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERD--GQKYTLIDTAG  230 (435)
T ss_pred             ---------------cccccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEEC--CeeEEEEECCC
Confidence                           001124899999999999999999999988765554 333322223333333  35567899999


Q ss_pred             chh-------h--hhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccH
Q 006490          482 EEG-------V--KKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAV  552 (643)
Q Consensus       482 ~~~-------~--~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~  552 (643)
                      ...       .  ....++..+++.||++|+|+|++++.+.+. ..+...+.+.      ++|+++|+||||+.+.....
T Consensus       231 ~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~-~~i~~~~~~~------~~~~ivv~NK~Dl~~~~~~~  303 (435)
T PRK00093        231 IRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQD-LRIAGLALEA------GRALVIVVNKWDLVDEKTME  303 (435)
T ss_pred             CCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHH-HHHHHHHHHc------CCcEEEEEECccCCCHHHHH
Confidence            421       1  122335668899999999999999877554 3444444443      79999999999998543333


Q ss_pred             HHHHHHHHHh---CCCCcEEeeeccC-CHHHHHHHHHHHHhCCCCCCC
Q 006490          553 QDSARVTQEL---GIEPPIPVSMKSK-DLNNVFSRIIWAAEHPHLNIP  596 (643)
Q Consensus       553 ~~~~~~~~~~---~~~~~~~vSa~~g-~i~~l~~~l~~~~~~~~~~~~  596 (643)
                      +..+.+...+   +..+++++||++| |++++++.+.+.+..+..+++
T Consensus       304 ~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~~~~~~~~~~i~  351 (435)
T PRK00093        304 EFKKELRRRLPFLDYAPIVFISALTGQGVDKLLEAIDEAYENANRRIS  351 (435)
T ss_pred             HHHHHHHHhcccccCCCEEEEeCCCCCCHHHHHHHHHHHHHHHcCcCC
Confidence            3333333333   3457999999999 999999999988766554443

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=100.00  E-value=1.7e-36  Score=342.22  Aligned_cols=332  Identities=21%  Similarity=0.176  Sum_probs=226.3

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCC--CCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCc--------chhhhHHhhc
Q 006490           12 GVRVVVVGDRGTGKSSLIAAAATESV--PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLE--------NKGKLNEELK   81 (643)
Q Consensus        12 ~~kI~lvG~~~vGKSsL~n~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~--------~~~~~~~~~~   81 (643)
                      ..+|+|+|+||||||||+|+|++...  +.+.++++ ..+........+..+.+|||||+..        +......+++
T Consensus       275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT-~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~  353 (712)
T PRK09518        275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVT-RDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVS  353 (712)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCee-EEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHH
Confidence            36799999999999999999998763  34455432 1223334445677899999999864        2233446789


Q ss_pred             cCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccC
Q 006490           82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM  161 (643)
Q Consensus        82 ~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  161 (643)
                      .+|++|+|+|+++...  .....|...++..  ++|+|+|+||+|+....     ......+...++   .++++||++|
T Consensus       354 ~aD~iL~VvDa~~~~~--~~d~~i~~~Lr~~--~~pvIlV~NK~D~~~~~-----~~~~~~~~lg~~---~~~~iSA~~g  421 (712)
T PRK09518        354 LADAVVFVVDGQVGLT--STDERIVRMLRRA--GKPVVLAVNKIDDQASE-----YDAAEFWKLGLG---EPYPISAMHG  421 (712)
T ss_pred             hCCEEEEEEECCCCCC--HHHHHHHHHHHhc--CCCEEEEEECcccccch-----hhHHHHHHcCCC---CeEEEECCCC
Confidence            9999999999876433  3333578888765  89999999999986421     111222223333   4689999999


Q ss_pred             CChhHHHHHHHHHHhCCCCCCCccccccchHHHHHHHHhhhhhcCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHH
Q 006490          162 IQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRV  241 (643)
Q Consensus       162 ~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~  241 (643)
                      .||+++++++...+......                                                            
T Consensus       422 ~GI~eLl~~i~~~l~~~~~~------------------------------------------------------------  441 (712)
T PRK09518        422 RGVGDLLDEALDSLKVAEKT------------------------------------------------------------  441 (712)
T ss_pred             CCchHHHHHHHHhccccccc------------------------------------------------------------
Confidence            99999999876653210000                                                            


Q ss_pred             HHhhccCCcCCCCcChhhHHHHHHHHHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHh
Q 006490          242 VQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGI  321 (643)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~  321 (643)
                                                                         ...++                        
T Consensus       442 ---------------------------------------------------~~a~~------------------------  446 (712)
T PRK09518        442 ---------------------------------------------------SGFLT------------------------  446 (712)
T ss_pred             ---------------------------------------------------ccccC------------------------
Confidence                                                               00000                        


Q ss_pred             hhhhcCCCCCCCChhHHhhhhccCCCCCCCCCCCCCCccccCCcccchhhhhhhhhhhhccCHHHHHHHHHHhcCCCCcc
Q 006490          322 FGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGGDPA  401 (643)
Q Consensus       322 f~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~l~~~g~~~~~~  401 (643)
                                                                                                      
T Consensus       447 --------------------------------------------------------------------------------  446 (712)
T PRK09518        447 --------------------------------------------------------------------------------  446 (712)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccchhccchhhhhhhccccCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-C-CcccceEEEEEEcCCCcEEEEEEec
Q 006490          402 AALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-P-TTGEQYAVNVVDQPGGNKKTLILQE  479 (643)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~-~-t~~~~~~~~~v~~~g~~~~~~i~d~  479 (643)
                                        ....++|+|+|+||||||||+|+|++.++..+.. + |+.+ .....+...|.  .+.+|||
T Consensus       447 ------------------~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d-~~~~~~~~~~~--~~~liDT  505 (712)
T PRK09518        447 ------------------PSGLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRD-PVDEIVEIDGE--DWLFIDT  505 (712)
T ss_pred             ------------------CCCCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcC-cceeEEEECCC--EEEEEEC
Confidence                              0123689999999999999999999998755443 3 4444 33344555533  4568999


Q ss_pred             CCch---------hhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccc
Q 006490          480 IPEE---------GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM  550 (643)
Q Consensus       480 ~g~~---------~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~  550 (643)
                      +|..         .+....++..+++.||++++|+|++++.+++... ++..+...      ++|+++|+||||+.+...
T Consensus       506 aG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~-i~~~~~~~------~~piIiV~NK~DL~~~~~  578 (712)
T PRK09518        506 AGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLK-VMSMAVDA------GRALVLVFNKWDLMDEFR  578 (712)
T ss_pred             CCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHHc------CCCEEEEEEchhcCChhH
Confidence            9942         1222223456689999999999999998866654 44444443      899999999999976332


Q ss_pred             cHHHHHHHHHH---hCCCCcEEeeeccC-CHHHHHHHHHHHHhCCCCCCCCcc
Q 006490          551 AVQDSARVTQE---LGIEPPIPVSMKSK-DLNNVFSRIIWAAEHPHLNIPETE  599 (643)
Q Consensus       551 ~~~~~~~~~~~---~~~~~~~~vSa~~g-~i~~l~~~l~~~~~~~~~~~~~~~  599 (643)
                      .....+.+...   ..+.+++++||++| |++++++.+.+.+..+..+++...
T Consensus       579 ~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~~~~~~~~~~i~T~~  631 (712)
T PRK09518        579 RQRLERLWKTEFDRVTWARRVNLSAKTGWHTNRLAPAMQEALESWDQRIPTGK  631 (712)
T ss_pred             HHHHHHHHHHhccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhcccCChHH
Confidence            22222223322   23446799999999 999999999999987776666543

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=2e-29  Score=225.45  Aligned_cols=165  Identities=25%  Similarity=0.441  Sum_probs=155.0

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (643)
                      ..-+||+|+|++|||||.|+.||.++.+...+..|++.++..+.+...|...++.+|||+||+++.++  +..++++||+
T Consensus         7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrti--t~syYR~ahG   84 (205)
T KOG0084|consen    7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTI--TSSYYRGAHG   84 (205)
T ss_pred             ceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhh--hHhhccCCCe
Confidence            45799999999999999999999999999999999999999999999998999999999999999998  8999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHH
Q 006490          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLN  578 (643)
Q Consensus       501 illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~  578 (643)
                      ||+|||+++..||..+..|+.++.++...   +.|.++|+||+|+.+.+++ .++++.++.++++++++++|||++ |++
T Consensus        85 ii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~---~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe  161 (205)
T KOG0084|consen   85 IIFVYDITKQESFNNVKRWIQEIDRYASE---NVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVE  161 (205)
T ss_pred             EEEEEEcccHHHhhhHHHHHHHhhhhccC---CCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHH
Confidence            99999999999999999999999998775   7899999999999987766 778889999999988999999999 999


Q ss_pred             HHHHHHHHHHhC
Q 006490          579 NVFSRIIWAAEH  590 (643)
Q Consensus       579 ~l~~~l~~~~~~  590 (643)
                      +.|..+...+..
T Consensus       162 ~~F~~la~~lk~  173 (205)
T KOG0084|consen  162 DAFLTLAKELKQ  173 (205)
T ss_pred             HHHHHHHHHHHH
Confidence            999999997753

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1.5e-28  Score=218.99  Aligned_cols=165  Identities=23%  Similarity=0.354  Sum_probs=151.7

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i  501 (643)
                      ..+|++++|..|||||||+-|+..++|.....||++-.+..+.+.++....++.||||+|+++|.++  .+.|+++|+++
T Consensus         4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~sl--apMYyRgA~AA   81 (200)
T KOG0092|consen    4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSL--APMYYRGANAA   81 (200)
T ss_pred             ceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCccccccc--ccceecCCcEE
Confidence            3589999999999999999999999999888899999999999999978889999999999999999  89999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHH
Q 006490          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNN  579 (643)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~  579 (643)
                      |+|||+++.+||..++.|+.++.+..++   ++-+.+|+||+||...+++ .+++..+++..|+. ++++|||+| |+++
T Consensus        82 ivvYDit~~~SF~~aK~WvkeL~~~~~~---~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll-~~ETSAKTg~Nv~~  157 (200)
T KOG0092|consen   82 IVVYDITDEESFEKAKNWVKELQRQASP---NIVIALVGNKADLLERREVEFEEAQAYAESQGLL-FFETSAKTGENVNE  157 (200)
T ss_pred             EEEEecccHHHHHHHHHHHHHHHhhCCC---CeEEEEecchhhhhhcccccHHHHHHHHHhcCCE-EEEEecccccCHHH
Confidence            9999999999999999999999987663   6778889999999985554 88999999999998 999999999 9999


Q ss_pred             HHHHHHHHHhCCC
Q 006490          580 VFSRIIWAAEHPH  592 (643)
Q Consensus       580 l~~~l~~~~~~~~  592 (643)
                      +|..|.+.+....
T Consensus       158 if~~Ia~~lp~~~  170 (200)
T KOG0092|consen  158 IFQAIAEKLPCSD  170 (200)
T ss_pred             HHHHHHHhccCcc
Confidence            9999999886433

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=8.7e-28  Score=218.74  Aligned_cols=166  Identities=20%  Similarity=0.358  Sum_probs=155.6

Q ss_pred             ccCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccC
Q 006490          419 TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASC  498 (643)
Q Consensus       419 ~~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~a  498 (643)
                      .....+||+++|++|||||+++.++....+...+..|.+.++..+.+.++|...++.+|||+|++++..+  +..|+++|
T Consensus         8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti--~~sYyrgA   85 (207)
T KOG0078|consen    8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTI--TTAYYRGA   85 (207)
T ss_pred             CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHH--HHHHHhhc
Confidence            3456799999999999999999999999999998889999999999999998889999999999999998  89999999


Q ss_pred             CEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-C
Q 006490          499 DVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-D  576 (643)
Q Consensus       499 d~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~  576 (643)
                      +++++|||+++..||+.+..|+..+.++.+.   +.|.++|+||+|+..++++ .+..+.++.++|+. ++++|||+| |
T Consensus        86 ~gi~LvyDitne~Sfeni~~W~~~I~e~a~~---~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~-F~EtSAk~~~N  161 (207)
T KOG0078|consen   86 MGILLVYDITNEKSFENIRNWIKNIDEHASD---DVVKILVGNKCDLEEKRQVSKERGEALAREYGIK-FFETSAKTNFN  161 (207)
T ss_pred             CeeEEEEEccchHHHHHHHHHHHHHHhhCCC---CCcEEEeeccccccccccccHHHHHHHHHHhCCe-EEEccccCCCC
Confidence            9999999999999999999999999998765   7999999999999987666 88999999999998 999999999 9


Q ss_pred             HHHHHHHHHHHHhC
Q 006490          577 LNNVFSRIIWAAEH  590 (643)
Q Consensus       577 i~~l~~~l~~~~~~  590 (643)
                      |++.|..|++.+..
T Consensus       162 I~eaF~~La~~i~~  175 (207)
T KOG0078|consen  162 IEEAFLSLARDILQ  175 (207)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999998864

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=6.8e-28  Score=214.21  Aligned_cols=165  Identities=22%  Similarity=0.372  Sum_probs=152.2

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i  501 (643)
                      +.+|++++|+.+||||||++|++.+.|...|.+|++.++....+.+.|....+.+|||+|||++.++  ...|++++.++
T Consensus        21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrsl--ipsY~Rds~va   98 (221)
T KOG0094|consen   21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL--IPSYIRDSSVA   98 (221)
T ss_pred             eEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhh--hhhhccCCeEE
Confidence            3489999999999999999999999999999999999999999999988889999999999999999  89999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHH
Q 006490          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNN  579 (643)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~  579 (643)
                      |+|||+++..||++...|+.+++......  +.-+++|+||.||.++++. .++.+..+++++.. ++++||+.| ||.+
T Consensus        99 viVyDit~~~Sfe~t~kWi~dv~~e~gs~--~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~-f~etsak~g~NVk~  175 (221)
T KOG0094|consen   99 VIVYDITDRNSFENTSKWIEDVRRERGSD--DVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAE-FIETSAKAGENVKQ  175 (221)
T ss_pred             EEEEeccccchHHHHHHHHHHHHhccCCC--ceEEEEEcccccccchhhhhHHHHHHHHHHhCcE-EEEecccCCCCHHH
Confidence            99999999999999999999999876643  4667899999999998776 77888999999997 999999999 9999


Q ss_pred             HHHHHHHHHhCC
Q 006490          580 VFSRIIWAAEHP  591 (643)
Q Consensus       580 l~~~l~~~~~~~  591 (643)
                      +|..|...+...
T Consensus       176 lFrrIaa~l~~~  187 (221)
T KOG0094|consen  176 LFRRIAAALPGM  187 (221)
T ss_pred             HHHHHHHhccCc
Confidence            999988887644

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=6.4e-28  Score=215.78  Aligned_cols=168  Identities=18%  Similarity=0.288  Sum_probs=145.1

Q ss_pred             CCCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCC
Q 006490            7 SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRAD   84 (643)
Q Consensus         7 ~~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad   84 (643)
                      ......+||+|+|+.|||||+|..||..+.|.+.+..+.+...  ....++++.++++||||+|++++...+..+|++||
T Consensus         4 ~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ah   83 (205)
T KOG0084|consen    4 PEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAH   83 (205)
T ss_pred             cccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCC
Confidence            3455578999999999999999999999999888776666654  55667788899999999999999999999999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCC
Q 006490           85 AVVLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQ  163 (643)
Q Consensus        85 ~il~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  163 (643)
                      +||+|||+++..||+.+. .|+.+++++. .+.|.+|||||||+...+.+ . .+..+.++..++- ..++++||+++.|
T Consensus        84 Gii~vyDiT~~~SF~~v~-~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v-~-~~~a~~fa~~~~~-~~f~ETSAK~~~N  159 (205)
T KOG0084|consen   84 GIIFVYDITKQESFNNVK-RWIQEIDRYASENVPKLLVGNKCDLTEKRVV-S-TEEAQEFADELGI-PIFLETSAKDSTN  159 (205)
T ss_pred             eEEEEEEcccHHHhhhHH-HHHHHhhhhccCCCCeEEEeeccccHhheec-C-HHHHHHHHHhcCC-cceeecccCCccC
Confidence            999999999999999999 5999999875 56799999999999988776 3 4445778888773 2399999999999


Q ss_pred             hhHHHHHHHHHHhCC
Q 006490          164 VPDVFYYAQKAVLHP  178 (643)
Q Consensus       164 i~~l~~~i~~~~~~~  178 (643)
                      |++.|..+...+...
T Consensus       160 Ve~~F~~la~~lk~~  174 (205)
T KOG0084|consen  160 VEDAFLTLAKELKQR  174 (205)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999998877543

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=8.1e-28  Score=214.28  Aligned_cols=166  Identities=20%  Similarity=0.274  Sum_probs=140.5

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEE
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il   87 (643)
                      ...+||+|+|+.|||||||+-|+..+.|.+...++.+...  ....++...+++.||||+|+++|.++.++|+++|+++|
T Consensus         3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi   82 (200)
T KOG0092|consen    3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI   82 (200)
T ss_pred             cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence            3568999999999999999999999999887444444332  44555666799999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhH
Q 006490           88 LTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (643)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  166 (643)
                      +|||+++.+||..+.. |.+.+++.. +++-+.|||||+|+...+.+ . .+....+++..+.  .|+++||++|.||++
T Consensus        83 vvYDit~~~SF~~aK~-WvkeL~~~~~~~~vialvGNK~DL~~~R~V-~-~~ea~~yAe~~gl--l~~ETSAKTg~Nv~~  157 (200)
T KOG0092|consen   83 VVYDITDEESFEKAKN-WVKELQRQASPNIVIALVGNKADLLERREV-E-FEEAQAYAESQGL--LFFETSAKTGENVNE  157 (200)
T ss_pred             EEEecccHHHHHHHHH-HHHHHHhhCCCCeEEEEecchhhhhhcccc-c-HHHHHHHHHhcCC--EEEEEecccccCHHH
Confidence            9999999999999995 999998764 45667789999999987776 3 4456778887764  599999999999999


Q ss_pred             HHHHHHHHHhCCCC
Q 006490          167 VFYYAQKAVLHPTA  180 (643)
Q Consensus       167 l~~~i~~~~~~~~~  180 (643)
                      +|..|.+.++....
T Consensus       158 if~~Ia~~lp~~~~  171 (200)
T KOG0092|consen  158 IFQAIAEKLPCSDP  171 (200)
T ss_pred             HHHHHHHhccCccc
Confidence            99999999876544

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=5.4e-27  Score=206.63  Aligned_cols=162  Identities=19%  Similarity=0.321  Sum_probs=151.3

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i  501 (643)
                      ..+|+.++|+.|||||+|+.+++...|..+++.|++.++-.+.+.+++...++.+|||+|++.+.++  +..+++.|.++
T Consensus         5 ~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv--~~syYr~a~Ga   82 (216)
T KOG0098|consen    5 YLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSV--TRSYYRGAAGA   82 (216)
T ss_pred             ceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHH--HHHHhccCcce
Confidence            4689999999999999999999999999999999999999999999988889999999999999999  89999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHH
Q 006490          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNN  579 (643)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~  579 (643)
                      |||||+++++||..+..|+.+++++..+   +..+++++||+||...+.+ .++.+.|+++.|+. ++++||+++ |+++
T Consensus        83 lLVydit~r~sF~hL~~wL~D~rq~~~~---NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLi-fmETSakt~~~VEE  158 (216)
T KOG0098|consen   83 LLVYDITRRESFNHLTSWLEDARQHSNE---NMVIMLIGNKSDLEARREVSKEEGEAFAREHGLI-FMETSAKTAENVEE  158 (216)
T ss_pred             EEEEEccchhhHHHHHHHHHHHHHhcCC---CcEEEEEcchhhhhccccccHHHHHHHHHHcCce-eehhhhhhhhhHHH
Confidence            9999999999999999999999988633   8999999999999987665 88999999999998 899999999 9999


Q ss_pred             HHHHHHHHHh
Q 006490          580 VFSRIIWAAE  589 (643)
Q Consensus       580 l~~~l~~~~~  589 (643)
                      +|......+.
T Consensus       159 aF~nta~~Iy  168 (216)
T KOG0098|consen  159 AFINTAKEIY  168 (216)
T ss_pred             HHHHHHHHHH
Confidence            9999888653

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=99.95  E-value=3.1e-27  Score=199.16  Aligned_cols=162  Identities=26%  Similarity=0.407  Sum_probs=151.4

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEE
Q 006490          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~il  502 (643)
                      -++.+|+|+||||||||+-+|....|...|..|++.++.+++++++|...++.|||++|++.+..+  +..+++..++++
T Consensus         8 LfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrti--tstyyrgthgv~   85 (198)
T KOG0079|consen    8 LFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTI--TSTYYRGTHGVI   85 (198)
T ss_pred             HHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHH--HHHHccCCceEE
Confidence            467899999999999999999999999999889999999999999999999999999999999998  888999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHHH
Q 006490          503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNNV  580 (643)
Q Consensus       503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l  580 (643)
                      +|||+++++||....+|+.++...++    ..|-|+|+||.|+.+.+.+ .++++.++..+|+. +|++|||.+ |++.+
T Consensus        86 vVYDVTn~ESF~Nv~rWLeei~~ncd----sv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie-~FETSaKe~~NvE~m  160 (198)
T KOG0079|consen   86 VVYDVTNGESFNNVKRWLEEIRNNCD----SVPKVLVGNKNDDPERRVVDTEDARAFALQMGIE-LFETSAKENENVEAM  160 (198)
T ss_pred             EEEECcchhhhHhHHHHHHHHHhcCc----cccceecccCCCCccceeeehHHHHHHHHhcCch-heehhhhhcccchHH
Confidence            99999999999999999999999887    7899999999999887666 78899999999998 999999999 99999


Q ss_pred             HHHHHHHHhCC
Q 006490          581 FSRIIWAAEHP  591 (643)
Q Consensus       581 ~~~l~~~~~~~  591 (643)
                      |..|.+++.+.
T Consensus       161 F~cit~qvl~~  171 (198)
T KOG0079|consen  161 FHCITKQVLQA  171 (198)
T ss_pred             HHHHHHHHHHH
Confidence            99999987533

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=99.95  E-value=7.2e-27  Score=199.95  Aligned_cols=164  Identities=20%  Similarity=0.305  Sum_probs=151.3

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i  501 (643)
                      ..+||+++|.+|||||||+-+|+...|....+.|++.++.++.+.++|.+.++-+|||+|++++..+  +..++++|.++
T Consensus        10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtL--TpSyyRgaqGi   87 (209)
T KOG0080|consen   10 TTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTL--TPSYYRGAQGI   87 (209)
T ss_pred             eeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhcc--CHhHhccCcee
Confidence            4589999999999999999999999998888778999999999999999999999999999999999  99999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHH
Q 006490          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNN  579 (643)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~  579 (643)
                      |+|||++.+++|..+..|+.++..+....  ++-.++|+||+|...++.+ .++...+++++++. ++++|||+. |+..
T Consensus        88 IlVYDVT~Rdtf~kLd~W~~Eld~Ystn~--diikmlVgNKiDkes~R~V~reEG~kfAr~h~~L-FiE~SAkt~~~V~~  164 (209)
T KOG0080|consen   88 ILVYDVTSRDTFVKLDIWLKELDLYSTNP--DIIKMLVGNKIDKESERVVDREEGLKFARKHRCL-FIECSAKTRENVQC  164 (209)
T ss_pred             EEEEEccchhhHHhHHHHHHHHHhhcCCc--cHhHhhhcccccchhcccccHHHHHHHHHhhCcE-EEEcchhhhccHHH
Confidence            99999999999999999999999887654  6778899999998865555 78889999999998 999999999 9999


Q ss_pred             HHHHHHHHHhC
Q 006490          580 VFSRIIWAAEH  590 (643)
Q Consensus       580 l~~~l~~~~~~  590 (643)
                      .|+.+++.+.+
T Consensus       165 ~FeelveKIi~  175 (209)
T KOG0080|consen  165 CFEELVEKIIE  175 (209)
T ss_pred             HHHHHHHHHhc
Confidence            99999998753

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=99.95  E-value=7e-27  Score=205.61  Aligned_cols=171  Identities=18%  Similarity=0.312  Sum_probs=152.6

Q ss_pred             cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCC
Q 006490          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (643)
Q Consensus       420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad  499 (643)
                      ++..+||.|+|++|||||||+|++++.+|...+..|++.++..+-+.+++....+.+|||+|++++.++  ....+++||
T Consensus         6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsL--g~aFYRgaD   83 (210)
T KOG0394|consen    6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSL--GVAFYRGAD   83 (210)
T ss_pred             cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhc--ccceecCCc
Confidence            456799999999999999999999999999999999999999888888877778899999999999998  678899999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhcCCC-CCCCcEEEEEeCCCCCCc---cccHHHHHHHHHHhCCCCcEEeeeccC
Q 006490          500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDS-GYGVPCLLIASKDDLKPY---TMAVQDSARVTQELGIEPPIPVSMKSK  575 (643)
Q Consensus       500 ~illv~D~s~~~s~~~~~~~~~~i~~~~~~~-~~~~pvilv~NK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~vSa~~g  575 (643)
                      ++++|||++++.||+.+..|..++..+..+. +..-|+||++||+|+...   .+..+.+..||+..|-.|++++|||..
T Consensus        84 cCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~  163 (210)
T KOG0394|consen   84 CCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEA  163 (210)
T ss_pred             eEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEeccccc
Confidence            9999999999999999999999987766532 347899999999999762   333888999999999888999999999


Q ss_pred             -CHHHHHHHHHHHHhCCC
Q 006490          576 -DLNNVFSRIIWAAEHPH  592 (643)
Q Consensus       576 -~i~~l~~~l~~~~~~~~  592 (643)
                       |+++.|+.+.+.+....
T Consensus       164 ~NV~~AFe~ia~~aL~~E  181 (210)
T KOG0394|consen  164 TNVDEAFEEIARRALANE  181 (210)
T ss_pred             ccHHHHHHHHHHHHHhcc
Confidence             99999999999876443

>cd04121 Rab40 Rab40 subfamily

Probab=99.94  E-value=5.4e-26  Score=215.03  Aligned_cols=168  Identities=18%  Similarity=0.276  Sum_probs=145.9

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i  501 (643)
                      ..+||+++|.+|||||||+++|.++.+...+.+|.+.++....+..++....+.+||++|++.+..+  +..+++++|++
T Consensus         5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l--~~~~~~~ad~i   82 (189)
T cd04121           5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTI--FRSYSRGAQGI   82 (189)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHH--HHHHhcCCCEE
Confidence            4589999999999999999999999888777777777777777777766678889999999999887  77889999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHH
Q 006490          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNN  579 (643)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~  579 (643)
                      |+|||++++.||+.+..|+.++....+    +.|++||+||+|+...+.. .++++.+++..++. +++|||++| |+++
T Consensus        83 llVfD~t~~~Sf~~~~~w~~~i~~~~~----~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~-~~e~SAk~g~~V~~  157 (189)
T cd04121          83 ILVYDITNRWSFDGIDRWIKEIDEHAP----GVPKILVGNRLHLAFKRQVATEQAQAYAERNGMT-FFEVSPLCNFNITE  157 (189)
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhCC----CCCEEEEEECccchhccCCCHHHHHHHHHHcCCE-EEEecCCCCCCHHH
Confidence            999999999999999999999977653    7999999999999765443 67889999999986 999999999 9999


Q ss_pred             HHHHHHHHHhCCCCCCC
Q 006490          580 VFSRIIWAAEHPHLNIP  596 (643)
Q Consensus       580 l~~~l~~~~~~~~~~~~  596 (643)
                      +|+++++.+.....+.|
T Consensus       158 ~F~~l~~~i~~~~~~~~  174 (189)
T cd04121         158 SFTELARIVLMRHGRPP  174 (189)
T ss_pred             HHHHHHHHHHHhcCCCC
Confidence            99999997765554443

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=2.2e-26  Score=209.56  Aligned_cols=170  Identities=16%  Similarity=0.260  Sum_probs=147.4

Q ss_pred             CCCCCCCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhh
Q 006490            3 GGSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEEL   80 (643)
Q Consensus         3 ~~~~~~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~   80 (643)
                      .+........+||+++|++|||||+++.+|..+.|...+..+.+...  .....++..+.+++|||+|++++..+...|+
T Consensus         3 ~~~~~~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYy   82 (207)
T KOG0078|consen    3 AMAKEDYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYY   82 (207)
T ss_pred             ccccCCcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHH
Confidence            34444566679999999999999999999999999877666555544  3344556678899999999999999999999


Q ss_pred             ccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCC-CCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcc
Q 006490           81 KRADAVVLTYACNQQSTLSRLSSYWLPELRRLEI-KVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT  159 (643)
Q Consensus        81 ~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~-~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  159 (643)
                      ++|+++++|||+++..+|+++.. |+..+.++.+ +.|.+|||||+|+...+.+  ..+..+.++.++|  ..++|+||+
T Consensus        83 rgA~gi~LvyDitne~Sfeni~~-W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V--~~e~ge~lA~e~G--~~F~EtSAk  157 (207)
T KOG0078|consen   83 RGAMGILLVYDITNEKSFENIRN-WIKNIDEHASDDVVKILVGNKCDLEEKRQV--SKERGEALAREYG--IKFFETSAK  157 (207)
T ss_pred             hhcCeeEEEEEccchHHHHHHHH-HHHHHHhhCCCCCcEEEeeccccccccccc--cHHHHHHHHHHhC--CeEEEcccc
Confidence            99999999999999999999995 9999998764 8999999999999987776  5667899999997  379999999


Q ss_pred             cCCChhHHHHHHHHHHhC
Q 006490          160 TMIQVPDVFYYAQKAVLH  177 (643)
Q Consensus       160 ~~~gi~~l~~~i~~~~~~  177 (643)
                      +|.||.+.|..+.+.+..
T Consensus       158 ~~~NI~eaF~~La~~i~~  175 (207)
T KOG0078|consen  158 TNFNIEEAFLSLARDILQ  175 (207)
T ss_pred             CCCCHHHHHHHHHHHHHh
Confidence            999999999999998774

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=99.94  E-value=1.1e-26  Score=198.74  Aligned_cols=168  Identities=21%  Similarity=0.298  Sum_probs=144.8

Q ss_pred             CCCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCC
Q 006490            7 SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRAD   84 (643)
Q Consensus         7 ~~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad   84 (643)
                      +..-..+||.|+|.+|||||||+-+|+.+.|.+..|.+.+...  ..+.+++..+++.||||+|+++|..+++.|+++|.
T Consensus         6 s~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaq   85 (209)
T KOG0080|consen    6 SGYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQ   85 (209)
T ss_pred             cCcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCc
Confidence            3445569999999999999999999999999888777555544  55677788999999999999999999999999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHHhcC--CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCC
Q 006490           85 AVVLTYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMI  162 (643)
Q Consensus        85 ~il~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  162 (643)
                      ++|+|||++.+++|..+. .|++++..++  +++-.++|+||+|...++.+ + .++...++.+++.  -+++|||++.+
T Consensus        86 GiIlVYDVT~Rdtf~kLd-~W~~Eld~Ystn~diikmlVgNKiDkes~R~V-~-reEG~kfAr~h~~--LFiE~SAkt~~  160 (209)
T KOG0080|consen   86 GIILVYDVTSRDTFVKLD-IWLKELDLYSTNPDIIKMLVGNKIDKESERVV-D-REEGLKFARKHRC--LFIECSAKTRE  160 (209)
T ss_pred             eeEEEEEccchhhHHhHH-HHHHHHHhhcCCccHhHhhhcccccchhcccc-c-HHHHHHHHHhhCc--EEEEcchhhhc
Confidence            999999999999999997 6999998875  56777899999998876666 4 4445677888874  49999999999


Q ss_pred             ChhHHHHHHHHHHhCCC
Q 006490          163 QVPDVFYYAQKAVLHPT  179 (643)
Q Consensus       163 gi~~l~~~i~~~~~~~~  179 (643)
                      ||+.+|+++..+++...
T Consensus       161 ~V~~~FeelveKIi~tp  177 (209)
T KOG0080|consen  161 NVQCCFEELVEKIIETP  177 (209)
T ss_pred             cHHHHHHHHHHHHhcCc
Confidence            99999999999987543

>cd04133 Rop_like Rop subfamily

Probab=99.94  E-value=4.8e-26  Score=212.93  Aligned_cols=163  Identities=26%  Similarity=0.391  Sum_probs=134.5

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-eeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEE
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA   91 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d   91 (643)
                      +||+++|++|||||||+.+++.+.|...+.++.+. ......++...+.+.||||+|++++..+...+++.+|++|+|||
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd   81 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS   81 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEE
Confidence            68999999999999999999999987765444433 32334455667899999999999999999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCc---------cchhhhhhhHHHHhhcccceEEEeCcccCC
Q 006490           92 CNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN---------ATSLEEVMGPIMQQFREIETCVECSATTMI  162 (643)
Q Consensus        92 ~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  162 (643)
                      ++++.+++.+...|++.++...++.|++|||||+|+.+.+.         . ...+....+++.++. ..++||||++|.
T Consensus        82 ~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~-v~~~~~~~~a~~~~~-~~~~E~SAk~~~  159 (176)
T cd04133          82 LISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASP-ITTAQGEELRKQIGA-AAYIECSSKTQQ  159 (176)
T ss_pred             cCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCC-CCHHHHHHHHHHcCC-CEEEECCCCccc
Confidence            99999999985579999987777899999999999965431         1 134456677777652 258999999999


Q ss_pred             ChhHHHHHHHHHHhC
Q 006490          163 QVPDVFYYAQKAVLH  177 (643)
Q Consensus       163 gi~~l~~~i~~~~~~  177 (643)
                      ||+++|+.+++.+..
T Consensus       160 nV~~~F~~~~~~~~~  174 (176)
T cd04133         160 NVKAVFDAAIKVVLQ  174 (176)
T ss_pred             CHHHHHHHHHHHHhc
Confidence            999999999987644

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd04133 Rop_like Rop subfamily

Probab=99.94  E-value=7.4e-26  Score=211.70  Aligned_cols=161  Identities=19%  Similarity=0.382  Sum_probs=139.5

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill  503 (643)
                      +||+++|.++||||||+.+++.+.+...+.||.+..+. ..+..+|...++.+|||+|++.+..+  +..++++||++|+
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~-~~~~~~~~~v~l~i~Dt~G~~~~~~~--~~~~~~~a~~~il   78 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVSVDGNTVNLGLWDTAGQEDYNRL--RPLSYRGADVFVL   78 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeE-EEEEECCEEEEEEEEECCCCcccccc--chhhcCCCcEEEE
Confidence            68999999999999999999999998888898877664 34556666778889999999999887  7788999999999


Q ss_pred             EEeCCChhhHHHH-HHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcc-----------ccHHHHHHHHHHhCCCCcEEee
Q 006490          504 VYDSSDEYSWKRT-KELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-----------MAVQDSARVTQELGIEPPIPVS  571 (643)
Q Consensus       504 v~D~s~~~s~~~~-~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~-----------~~~~~~~~~~~~~~~~~~~~vS  571 (643)
                      |||++++.||+.+ ..|+..+.....    +.|+++|+||+|+.+.+           ...++...+++..+..++++||
T Consensus        79 vyd~~~~~Sf~~~~~~w~~~i~~~~~----~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~S  154 (176)
T cd04133          79 AFSLISRASYENVLKKWVPELRHYAP----NVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECS  154 (176)
T ss_pred             EEEcCCHHHHHHHHHHHHHHHHHhCC----CCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECC
Confidence            9999999999998 689999876643    79999999999996543           3367888999999985699999


Q ss_pred             eccC-CHHHHHHHHHHHHhCC
Q 006490          572 MKSK-DLNNVFSRIIWAAEHP  591 (643)
Q Consensus       572 a~~g-~i~~l~~~l~~~~~~~  591 (643)
                      |++| |++++|+.+++.+.+|
T Consensus       155 Ak~~~nV~~~F~~~~~~~~~~  175 (176)
T cd04133         155 SKTQQNVKAVFDAAIKVVLQP  175 (176)
T ss_pred             CCcccCHHHHHHHHHHHHhcC
Confidence            9999 9999999999987544

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=99.94  E-value=4.9e-26  Score=214.29  Aligned_cols=165  Identities=25%  Similarity=0.377  Sum_probs=136.7

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-eeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEE
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (643)
                      ...+||+++|++|||||||+++++.+.|...+.++.+. ......++...+.+.||||+|++++..+.+.+++++|++|+
T Consensus         3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~il   82 (182)
T cd04172           3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI   82 (182)
T ss_pred             cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEE
Confidence            35689999999999999999999999987775544433 23444556677899999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCC----------C-ccchhhhhhhHHHHhhcccceEEEeC
Q 006490           89 TYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD----------H-NATSLEEVMGPIMQQFREIETCVECS  157 (643)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~----------~-~~~~~~~~~~~~~~~~~~~~~~~~~S  157 (643)
                      |||++++.+++.+...|.+.+++.+++.|++|||||+|+...          + .. ...+..+.++++++. .+|++||
T Consensus        83 vyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~-v~~~~~~~~a~~~~~-~~~~E~S  160 (182)
T cd04172          83 CFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTP-VSYDQGANMAKQIGA-ATYIECS  160 (182)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCC-CCHHHHHHHHHHcCC-CEEEECC
Confidence            999999999999855799999888889999999999998642          1 11 234557888888873 2699999


Q ss_pred             cccCCC-hhHHHHHHHHHHh
Q 006490          158 ATTMIQ-VPDVFYYAQKAVL  176 (643)
Q Consensus       158 a~~~~g-i~~l~~~i~~~~~  176 (643)
                      |++|.| |+++|+.+++.++
T Consensus       161 Ak~~~n~v~~~F~~~~~~~~  180 (182)
T cd04172         161 ALQSENSVRDIFHVATLACV  180 (182)
T ss_pred             cCCCCCCHHHHHHHHHHHHh
Confidence            999998 9999999988643

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd04120 Rab12 Rab12 subfamily

Probab=99.94  E-value=9.9e-26  Score=215.22  Aligned_cols=160  Identities=18%  Similarity=0.343  Sum_probs=139.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill  503 (643)
                      ++|+++|.+|||||||++++..+.+...+.+|.+.++....+..+|....+.+||++|++.+..+  +..++++||++|+
T Consensus         1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l--~~~y~~~ad~iIl   78 (202)
T cd04120           1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSI--TSAYYRSAKGIIL   78 (202)
T ss_pred             CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHH--HHHHhcCCCEEEE
Confidence            37999999999999999999999998888888888888788888866778889999999999888  7889999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHh-CCCCcEEeeeccC-CHHHH
Q 006490          504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQEL-GIEPPIPVSMKSK-DLNNV  580 (643)
Q Consensus       504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~-~~~~~~~vSa~~g-~i~~l  580 (643)
                      |||++++.||+.+..|+..+......   +.|+++|+||+|+...+.. .+..+++++.+ ++. +++|||++| |++++
T Consensus        79 VfDvtd~~Sf~~l~~w~~~i~~~~~~---~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~-~~etSAktg~gV~e~  154 (202)
T cd04120          79 VYDITKKETFDDLPKWMKMIDKYASE---DAELLLVGNKLDCETDREISRQQGEKFAQQITGMR-FCEASAKDNFNVDEI  154 (202)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhCCC---CCcEEEEEECcccccccccCHHHHHHHHHhcCCCE-EEEecCCCCCCHHHH
Confidence            99999999999999999888765432   7999999999999764444 56677788776 565 999999999 99999


Q ss_pred             HHHHHHHHh
Q 006490          581 FSRIIWAAE  589 (643)
Q Consensus       581 ~~~l~~~~~  589 (643)
                      |+++++.+.
T Consensus       155 F~~l~~~~~  163 (202)
T cd04120         155 FLKLVDDIL  163 (202)
T ss_pred             HHHHHHHHH
Confidence            999998764

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=2.8e-26  Score=203.97  Aligned_cols=167  Identities=20%  Similarity=0.273  Sum_probs=141.3

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeC--CcccCCceeEEEEeCCCCCcchhhhHHhhccCCE
Q 006490            8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLP--PDFYPDRVPVTIIDTSSSLENKGKLNEELKRADA   85 (643)
Q Consensus         8 ~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~   85 (643)
                      ...+.+||+++|+.+||||||++|++.+.|..++..+.+.....  ..+.+..+++++|||+|+++|..+.+.|++++.+
T Consensus        18 ~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~v   97 (221)
T KOG0094|consen   18 APLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   97 (221)
T ss_pred             ccceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeE
Confidence            34556999999999999999999999999988888777665533  3444567889999999999999999999999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHhcC-C-CCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCC
Q 006490           86 VVLTYACNQQSTLSRLSSYWLPELRRLE-I-KVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQ  163 (643)
Q Consensus        86 il~v~d~~~~~s~~~~~~~~~~~l~~~~-~-~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  163 (643)
                      +|+|||+++..||++.. +|++.+++.. . +.-++|||||.||.+.+++ ..++ .+..+++++.  .|+++||+.|.|
T Consensus        98 aviVyDit~~~Sfe~t~-kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqv-s~eE-g~~kAkel~a--~f~etsak~g~N  172 (221)
T KOG0094|consen   98 AVIVYDITDRNSFENTS-KWIEDVRRERGSDDVIIFLVGNKTDLSDKRQV-SIEE-GERKAKELNA--EFIETSAKAGEN  172 (221)
T ss_pred             EEEEEeccccchHHHHH-HHHHHHHhccCCCceEEEEEcccccccchhhh-hHHH-HHHHHHHhCc--EEEEecccCCCC
Confidence            99999999999999998 5999997653 3 4667889999999998877 4444 4577888885  599999999999


Q ss_pred             hhHHHHHHHHHHhCCC
Q 006490          164 VPDVFYYAQKAVLHPT  179 (643)
Q Consensus       164 i~~l~~~i~~~~~~~~  179 (643)
                      |.++|..|...++...
T Consensus       173 Vk~lFrrIaa~l~~~~  188 (221)
T KOG0094|consen  173 VKQLFRRIAAALPGME  188 (221)
T ss_pred             HHHHHHHHHHhccCcc
Confidence            9999999887765543

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=6.9e-26  Score=190.97  Aligned_cols=163  Identities=20%  Similarity=0.360  Sum_probs=149.6

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (643)
                      ...+|+.|+|...||||||+.++++..|...+..|.+.++.++++--...+.++.+|||+|+|.+..+  +..++++|++
T Consensus        19 DymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrti--TTayyRgamg   96 (193)
T KOG0093|consen   19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTI--TTAYYRGAMG   96 (193)
T ss_pred             cceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHH--HHHHhhccce
Confidence            34579999999999999999999999999988889999999988777667788999999999999888  8899999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHH
Q 006490          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLN  578 (643)
Q Consensus       501 illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~  578 (643)
                      +|+|||+++.+||..+..|...|..++-.   +.|+|+|+||||+.+++.+ .+....+++++|+. ++++|||.+ |++
T Consensus        97 fiLmyDitNeeSf~svqdw~tqIktysw~---naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfe-fFEtSaK~NinVk  172 (193)
T KOG0093|consen   97 FILMYDITNEESFNSVQDWITQIKTYSWD---NAQVILVGNKCDMDSERVISHERGRQLADQLGFE-FFETSAKENINVK  172 (193)
T ss_pred             EEEEEecCCHHHHHHHHHHHHHheeeecc---CceEEEEecccCCccceeeeHHHHHHHHHHhChH-HhhhcccccccHH
Confidence            99999999999999999999999877544   8999999999999988776 78899999999998 999999999 999


Q ss_pred             HHHHHHHHHHh
Q 006490          579 NVFSRIIWAAE  589 (643)
Q Consensus       579 ~l~~~l~~~~~  589 (643)
                      ++|+.+...+.
T Consensus       173 ~~Fe~lv~~Ic  183 (193)
T KOG0093|consen  173 QVFERLVDIIC  183 (193)
T ss_pred             HHHHHHHHHHH
Confidence            99999998875

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=6.9e-26  Score=204.81  Aligned_cols=163  Identities=21%  Similarity=0.345  Sum_probs=152.0

Q ss_pred             cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCC
Q 006490          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (643)
Q Consensus       420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad  499 (643)
                      ....+||+++|+++||||-|+.|+...+|...+.+|++..+....+.++|...+..||||+|+++++.+  +..++++|.
T Consensus        11 ~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAi--tSaYYrgAv   88 (222)
T KOG0087|consen   11 YDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAI--TSAYYRGAV   88 (222)
T ss_pred             cceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccc--cchhhcccc
Confidence            456799999999999999999999999999999999999999999999988899999999999999998  899999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CH
Q 006490          500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DL  577 (643)
Q Consensus       500 ~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i  577 (643)
                      ++++|||++...+|+.+.+|+.+++.+...   ++++++|+||+||.+.+.+ .++...++++.++. ++++||+.+ |+
T Consensus        89 GAllVYDITr~~Tfenv~rWL~ELRdhad~---nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~-f~EtSAl~~tNV  164 (222)
T KOG0087|consen   89 GALLVYDITRRQTFENVERWLKELRDHADS---NIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLF-FLETSALDATNV  164 (222)
T ss_pred             eeEEEEechhHHHHHHHHHHHHHHHhcCCC---CeEEEEeecchhhhhccccchhhhHhHHHhcCce-EEEecccccccH
Confidence            999999999999999999999999988755   8999999999999886555 78899999999998 999999999 99


Q ss_pred             HHHHHHHHHHH
Q 006490          578 NNVFSRIIWAA  588 (643)
Q Consensus       578 ~~l~~~l~~~~  588 (643)
                      ++.|+.++..+
T Consensus       165 e~aF~~~l~~I  175 (222)
T KOG0087|consen  165 EKAFERVLTEI  175 (222)
T ss_pred             HHHHHHHHHHH
Confidence            99999888765

>cd01875 RhoG RhoG subfamily

Probab=99.94  E-value=1e-25  Score=214.83  Aligned_cols=168  Identities=26%  Similarity=0.393  Sum_probs=136.0

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe-eeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (643)
Q Consensus        11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v   89 (643)
                      ..+||+++|++|||||||+++++.+.|...+.++.+.. .....++...+.+.||||+|++.+..+++.+++++|++|+|
T Consensus         2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv   81 (191)
T cd01875           2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC   81 (191)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence            45899999999999999999999999876655444332 23334556678899999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCcc----------chhhhhhhHHHHhhcccceEEEeCcc
Q 006490           90 YACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA----------TSLEEVMGPIMQQFREIETCVECSAT  159 (643)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~Sa~  159 (643)
                      ||++++.+++.+...|.+.++...++.|++||+||+|+.+....          ....+..+.++++++. .++++|||+
T Consensus        82 ydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~-~~~~e~SAk  160 (191)
T cd01875          82 FSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHA-VKYLECSAL  160 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCC-cEEEEeCCC
Confidence            99999999999976799888776678999999999999654210          0122345666666653 269999999


Q ss_pred             cCCChhHHHHHHHHHHhCCC
Q 006490          160 TMIQVPDVFYYAQKAVLHPT  179 (643)
Q Consensus       160 ~~~gi~~l~~~i~~~~~~~~  179 (643)
                      +|.||+++|+++++.+..+.
T Consensus       161 ~g~~v~e~f~~l~~~~~~~~  180 (191)
T cd01875         161 NQDGVKEVFAEAVRAVLNPT  180 (191)
T ss_pred             CCCCHHHHHHHHHHHHhccc
Confidence            99999999999999887653

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=5.4e-26  Score=200.33  Aligned_cols=161  Identities=19%  Similarity=0.262  Sum_probs=142.1

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEE
Q 006490           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (643)
Q Consensus        11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (643)
                      ..+|++++|+.|||||+|+.+++.+.|.+....+.+...  ....++...++++||||+|++.+.+.+..+|+.|-++|+
T Consensus         5 ~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~GalL   84 (216)
T KOG0098|consen    5 YLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALL   84 (216)
T ss_pred             ceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceEE
Confidence            458999999999999999999999999887666555443  445677888999999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHH
Q 006490           89 TYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV  167 (643)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  167 (643)
                      |||++++++|..+.. |+..++.. .++..++|+|||+|+...+.+  .+++.+.++++.+-  .++++||+++.||++.
T Consensus        85 Vydit~r~sF~hL~~-wL~D~rq~~~~NmvImLiGNKsDL~~rR~V--s~EEGeaFA~ehgL--ifmETSakt~~~VEEa  159 (216)
T KOG0098|consen   85 VYDITRRESFNHLTS-WLEDARQHSNENMVIMLIGNKSDLEARREV--SKEEGEAFAREHGL--IFMETSAKTAENVEEA  159 (216)
T ss_pred             EEEccchhhHHHHHH-HHHHHHHhcCCCcEEEEEcchhhhhccccc--cHHHHHHHHHHcCc--eeehhhhhhhhhHHHH
Confidence            999999999999995 99999887 489999999999999988876  55667899999874  4889999999999999


Q ss_pred             HHHHHHHHh
Q 006490          168 FYYAQKAVL  176 (643)
Q Consensus       168 ~~~i~~~~~  176 (643)
                      |......+.
T Consensus       160 F~nta~~Iy  168 (216)
T KOG0098|consen  160 FINTAKEIY  168 (216)
T ss_pred             HHHHHHHHH
Confidence            998877764

>cd04121 Rab40 Rab40 subfamily

Probab=99.94  E-value=1.4e-25  Score=212.14  Aligned_cols=162  Identities=19%  Similarity=0.214  Sum_probs=135.5

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEE
Q 006490           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (643)
Q Consensus        11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (643)
                      ..+||+++|++|||||||+++|..+.+...++++.+...  ....++...+.+.+|||+|++.+..+++.+++++|++|+
T Consensus         5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~ill   84 (189)
T cd04121           5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIIL   84 (189)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEE
Confidence            458999999999999999999999888666544333322  223445556889999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHH
Q 006490           89 TYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (643)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  168 (643)
                      |||++++.+++.+. .|++.+....++.|+||||||+|+...+.+ . .+.++.+++..+  .++++|||++|.||+++|
T Consensus        85 VfD~t~~~Sf~~~~-~w~~~i~~~~~~~piilVGNK~DL~~~~~v-~-~~~~~~~a~~~~--~~~~e~SAk~g~~V~~~F  159 (189)
T cd04121          85 VYDITNRWSFDGID-RWIKEIDEHAPGVPKILVGNRLHLAFKRQV-A-TEQAQAYAERNG--MTFFEVSPLCNFNITESF  159 (189)
T ss_pred             EEECcCHHHHHHHH-HHHHHHHHhCCCCCEEEEEECccchhccCC-C-HHHHHHHHHHcC--CEEEEecCCCCCCHHHHH
Confidence            99999999999997 699999887789999999999999776555 3 445677877775  379999999999999999


Q ss_pred             HHHHHHHhC
Q 006490          169 YYAQKAVLH  177 (643)
Q Consensus       169 ~~i~~~~~~  177 (643)
                      +++.+.+..
T Consensus       160 ~~l~~~i~~  168 (189)
T cd04121         160 TELARIVLM  168 (189)
T ss_pred             HHHHHHHHH
Confidence            999987753

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd04131 Rnd Rnd subfamily

Probab=99.93  E-value=1.2e-25  Score=211.22  Aligned_cols=162  Identities=28%  Similarity=0.381  Sum_probs=133.5

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-eeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEE
Q 006490           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (643)
Q Consensus        12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~   90 (643)
                      .+||+++|++|||||||+++|+++.|...+.++.+. ......++...+.+.+|||+|++.+....+.+++.+|++|+||
T Consensus         1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf   80 (178)
T cd04131           1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF   80 (178)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence            379999999999999999999999987775544332 2233455566788999999999999888899999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCC------------CccchhhhhhhHHHHhhcccceEEEeCc
Q 006490           91 ACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD------------HNATSLEEVMGPIMQQFREIETCVECSA  158 (643)
Q Consensus        91 d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  158 (643)
                      |++++.+++.+...|.+.+++.+++.|++|||||+|+...            ..+  ..+..++++++++. .++++|||
T Consensus        81 dit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v--~~~e~~~~a~~~~~-~~~~E~SA  157 (178)
T cd04131          81 DISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPV--SYEQGCAIAKQLGA-EIYLECSA  157 (178)
T ss_pred             ECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCC--CHHHHHHHHHHhCC-CEEEECcc
Confidence            9999999999755799999988889999999999998642            122  34456788888773 26999999


Q ss_pred             ccCCC-hhHHHHHHHHHHh
Q 006490          159 TTMIQ-VPDVFYYAQKAVL  176 (643)
Q Consensus       159 ~~~~g-i~~l~~~i~~~~~  176 (643)
                      ++|+| |+++|..+++..+
T Consensus       158 ~~~~~~v~~~F~~~~~~~~  176 (178)
T cd04131         158 FTSEKSVRDIFHVATMACL  176 (178)
T ss_pred             CcCCcCHHHHHHHHHHHHh
Confidence            99995 9999999988543

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=99.93  E-value=2.7e-25  Score=209.22  Aligned_cols=161  Identities=19%  Similarity=0.296  Sum_probs=139.3

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i  501 (643)
                      ..+||+++|.+|||||||+++++.+.+...+.||....+. ..+..++....+.+|||+|++.+..+  ...++++||++
T Consensus         4 ~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~-~~~~~~~~~~~l~iwDtaG~e~~~~~--~~~~~~~ad~~   80 (182)
T cd04172           4 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNV--RPLSYPDSDAV   80 (182)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeE-EEEEECCEEEEEEEEECCCchhhHhh--hhhhcCCCCEE
Confidence            4589999999999999999999999998888888876654 45666766778889999999999887  67889999999


Q ss_pred             EEEEeCCChhhHHHH-HHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCc-------------cccHHHHHHHHHHhCCCCc
Q 006490          502 IFVYDSSDEYSWKRT-KELLVEVARLGEDSGYGVPCLLIASKDDLKPY-------------TMAVQDSARVTQELGIEPP  567 (643)
Q Consensus       502 llv~D~s~~~s~~~~-~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~-------------~~~~~~~~~~~~~~~~~~~  567 (643)
                      ++|||++++.||+.+ ..|+..+.+..+    +.|+++|+||+||.+.             ....++++++++++++.++
T Consensus        81 ilvyDit~~~Sf~~~~~~w~~~i~~~~~----~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~  156 (182)
T cd04172          81 LICFDISRPETLDSVLKKWKGEIQEFCP----NTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATY  156 (182)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHCC----CCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEE
Confidence            999999999999997 789999987654    7899999999998641             1337789999999997559


Q ss_pred             EEeeeccC-C-HHHHHHHHHHHHh
Q 006490          568 IPVSMKSK-D-LNNVFSRIIWAAE  589 (643)
Q Consensus       568 ~~vSa~~g-~-i~~l~~~l~~~~~  589 (643)
                      ++|||++| | ++++|..+++.+.
T Consensus       157 ~E~SAk~~~n~v~~~F~~~~~~~~  180 (182)
T cd04172         157 IECSALQSENSVRDIFHVATLACV  180 (182)
T ss_pred             EECCcCCCCCCHHHHHHHHHHHHh
Confidence            99999999 8 9999999998643

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=99.93  E-value=2.6e-25  Score=215.80  Aligned_cols=166  Identities=25%  Similarity=0.314  Sum_probs=137.2

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-CeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEE
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (643)
                      ...+||+++|++|||||||+++|+.+.|...+.++.+ .......++...+.+.||||+|++.+....+.++++||++|+
T Consensus        11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIl   90 (232)
T cd04174          11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLL   90 (232)
T ss_pred             eeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEE
Confidence            3568999999999999999999999998777544433 333444556677899999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCC------------CccchhhhhhhHHHHhhcccceEEEe
Q 006490           89 TYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD------------HNATSLEEVMGPIMQQFREIETCVEC  156 (643)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (643)
                      |||++++.+++.+...|.+.++..+++.|+|||+||+|+...            ..+  ..+..+.++++++. ..|++|
T Consensus        91 VyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~V--s~~e~~~~a~~~~~-~~~~Et  167 (232)
T cd04174          91 CFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPI--SYEQGCALAKQLGA-EVYLEC  167 (232)
T ss_pred             EEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcC--CHHHHHHHHHHcCC-CEEEEc
Confidence            999999999998655799999887778999999999998642            223  34456888888873 258999


Q ss_pred             CcccCC-ChhHHHHHHHHHHhCC
Q 006490          157 SATTMI-QVPDVFYYAQKAVLHP  178 (643)
Q Consensus       157 Sa~~~~-gi~~l~~~i~~~~~~~  178 (643)
                      ||++|. ||+++|+.+++.+...
T Consensus       168 SAktg~~~V~e~F~~~~~~~~~~  190 (232)
T cd04174         168 SAFTSEKSIHSIFRSASLLCLNK  190 (232)
T ss_pred             cCCcCCcCHHHHHHHHHHHHHHh
Confidence            999998 8999999999887643

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01874 Cdc42 Cdc42 subfamily

Probab=99.93  E-value=2.4e-25  Score=209.08  Aligned_cols=161  Identities=22%  Similarity=0.352  Sum_probs=130.0

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-eeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEE
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA   91 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d   91 (643)
                      +||+++|++|||||||+++|+.+.|...+.++.+. ......+....+.+.||||+|++++...+..+++.+|++|+|||
T Consensus         2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d   81 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFS   81 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEE
Confidence            69999999999999999999999987665554433 22233444556889999999999998888899999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCC-----------ccchhhhhhhHHHHhhcccceEEEeCccc
Q 006490           92 CNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH-----------NATSLEEVMGPIMQQFREIETCVECSATT  160 (643)
Q Consensus        92 ~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  160 (643)
                      ++++.+++.+...|.+.++...+++|+|||+||+|+....           .. ...+..+.++++++. ..+++|||++
T Consensus        82 ~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~-v~~~~~~~~a~~~~~-~~~~e~SA~t  159 (175)
T cd01874          82 VVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKP-ITPETGEKLARDLKA-VKYVECSALT  159 (175)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCC-cCHHHHHHHHHHhCC-cEEEEecCCC
Confidence            9999999999767999998777789999999999986541           11 123345556666653 3699999999


Q ss_pred             CCChhHHHHHHHHHH
Q 006490          161 MIQVPDVFYYAQKAV  175 (643)
Q Consensus       161 ~~gi~~l~~~i~~~~  175 (643)
                      |.|++++|+.+++.+
T Consensus       160 g~~v~~~f~~~~~~~  174 (175)
T cd01874         160 QKGLKNVFDEAILAA  174 (175)
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999988754

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04122 Rab14 Rab14 subfamily

Probab=99.93  E-value=8.1e-25  Score=204.12  Aligned_cols=161  Identities=19%  Similarity=0.356  Sum_probs=139.7

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEE
Q 006490          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~il  502 (643)
                      .+||+++|++|||||||+++|.++.+...+++|++.++....+...+....+.+||++|++.+..+  +..+++++|+++
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~~~~i   79 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAV--TRSYYRGAAGAL   79 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHH--HHHHhcCCCEEE
Confidence            379999999999999999999999988888778888777777777766678889999999988887  678899999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHHH
Q 006490          503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNNV  580 (643)
Q Consensus       503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l  580 (643)
                      +|||++++.+|+.+..|+..+......   +.|+++|+||+|+...+.. .+....+++..++. ++++||++| |++++
T Consensus        80 lv~d~~~~~s~~~~~~~~~~~~~~~~~---~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~e~Sa~~~~~i~e~  155 (166)
T cd04122          80 MVYDITRRSTYNHLSSWLTDARNLTNP---NTVIFLIGNKADLEAQRDVTYEEAKQFADENGLL-FLECSAKTGENVEDA  155 (166)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCCC---CCeEEEEEECcccccccCcCHHHHHHHHHHcCCE-EEEEECCCCCCHHHH
Confidence            999999999999999999888765432   6899999999999765543 56788888888876 999999999 99999


Q ss_pred             HHHHHHHHh
Q 006490          581 FSRIIWAAE  589 (643)
Q Consensus       581 ~~~l~~~~~  589 (643)
                      |..+++.+.
T Consensus       156 f~~l~~~~~  164 (166)
T cd04122         156 FLETAKKIY  164 (166)
T ss_pred             HHHHHHHHh
Confidence            999987663

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04120 Rab12 Rab12 subfamily

Probab=99.93  E-value=3.4e-25  Score=211.57  Aligned_cols=161  Identities=20%  Similarity=0.327  Sum_probs=131.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEE
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~   90 (643)
                      +.|+++|++|||||||+++|+.+.|...++++.+...  ....+++..+.+.+|||+|++.+..++..+++++|++|+||
T Consensus         1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf   80 (202)
T cd04120           1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY   80 (202)
T ss_pred             CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence            3699999999999999999999999877665544332  23445555688999999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHHH
Q 006490           91 ACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY  169 (643)
Q Consensus        91 d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  169 (643)
                      |++++.+++.+. .|...++... .+.|++||+||+|+...+.+ . .+..+.+++++.. ..+++|||++|.||+++|+
T Consensus        81 Dvtd~~Sf~~l~-~w~~~i~~~~~~~~piilVgNK~DL~~~~~v-~-~~~~~~~a~~~~~-~~~~etSAktg~gV~e~F~  156 (202)
T cd04120          81 DITKKETFDDLP-KWMKMIDKYASEDAELLLVGNKLDCETDREI-S-RQQGEKFAQQITG-MRFCEASAKDNFNVDEIFL  156 (202)
T ss_pred             ECcCHHHHHHHH-HHHHHHHHhCCCCCcEEEEEECccccccccc-C-HHHHHHHHHhcCC-CEEEEecCCCCCCHHHHHH
Confidence            999999999997 5999887654 57999999999999765554 3 3344566666533 3699999999999999999


Q ss_pred             HHHHHHhC
Q 006490          170 YAQKAVLH  177 (643)
Q Consensus       170 ~i~~~~~~  177 (643)
                      ++++.+..
T Consensus       157 ~l~~~~~~  164 (202)
T cd04120         157 KLVDDILK  164 (202)
T ss_pred             HHHHHHHH
Confidence            99987653

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=99.93  E-value=9.5e-26  Score=198.51  Aligned_cols=170  Identities=21%  Similarity=0.283  Sum_probs=142.0

Q ss_pred             CCCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCC
Q 006490            7 SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRAD   84 (643)
Q Consensus         7 ~~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad   84 (643)
                      ...+.-+||+|+|++|||||||.|++++.+|...+..+.+...  +...++..-+.++||||+|+++|.++.-.++++||
T Consensus         4 ~~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaD   83 (210)
T KOG0394|consen    4 LRKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGAD   83 (210)
T ss_pred             cCcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCc
Confidence            3456679999999999999999999999998777555444433  55566677788999999999999999999999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHHhc-C----CCCcEEEEEecccCCCCC-ccchhhhhhhHHHHhhcccceEEEeCc
Q 006490           85 AVVLTYACNQQSTLSRLSSYWLPELRRL-E----IKVPIIVAGCKLDLRGDH-NATSLEEVMGPIMQQFREIETCVECSA  158 (643)
Q Consensus        85 ~il~v~d~~~~~s~~~~~~~~~~~l~~~-~----~~~pvilv~NK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa  158 (643)
                      .+++|||++++.+++.+.. |.+++-.. .    ...|+||+|||+|+.... .+ ......+.|+..-+++ +|+|+||
T Consensus        84 cCvlvydv~~~~Sfe~L~~-Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~-VS~~~Aq~WC~s~gni-pyfEtSA  160 (210)
T KOG0394|consen   84 CCVLVYDVNNPKSFENLEN-WRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQ-VSEKKAQTWCKSKGNI-PYFETSA  160 (210)
T ss_pred             eEEEEeecCChhhhccHHH-HHHHHHHhcCCCCCCcccEEEEcccccCCCCccce-eeHHHHHHHHHhcCCc-eeEEecc
Confidence            9999999999999999995 98887443 2    367999999999997632 33 3556678999999875 8999999


Q ss_pred             ccCCChhHHHHHHHHHHhCCC
Q 006490          159 TTMIQVPDVFYYAQKAVLHPT  179 (643)
Q Consensus       159 ~~~~gi~~l~~~i~~~~~~~~  179 (643)
                      |...||.+.|+.+.+.++...
T Consensus       161 K~~~NV~~AFe~ia~~aL~~E  181 (210)
T KOG0394|consen  161 KEATNVDEAFEEIARRALANE  181 (210)
T ss_pred             cccccHHHHHHHHHHHHHhcc
Confidence            999999999999999877543

>cd01892 Miro2 Miro2 subfamily

Probab=99.93  E-value=8.6e-25  Score=204.27  Aligned_cols=164  Identities=37%  Similarity=0.608  Sum_probs=138.1

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCC
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFS-ENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~-~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad  499 (643)
                      |+.+||+++|.+|||||||+++|+++.+. ..+.||++.++....+..+|....+.+||++|++.+..+  +..++++||
T Consensus         2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~--~~~~~~~~d   79 (169)
T cd01892           2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILL--NDAELAACD   79 (169)
T ss_pred             CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCccccccc--chhhhhcCC
Confidence            67899999999999999999999999998 778889988887777888866667788999999887766  677889999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CH
Q 006490          500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DL  577 (643)
Q Consensus       500 ~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i  577 (643)
                      ++++|+|++++.+|+.+..|+..+...   .  ++|+++|+||+|+.+.... ....+++++.+++..++++||++| |+
T Consensus        80 ~~llv~d~~~~~s~~~~~~~~~~~~~~---~--~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v  154 (169)
T cd01892          80 VACLVYDSSDPKSFSYCAEVYKKYFML---G--EIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSS  154 (169)
T ss_pred             EEEEEEeCCCHHHHHHHHHHHHHhccC---C--CCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccH
Confidence            999999999999999888888765321   1  7999999999999654332 345677888888866799999999 99


Q ss_pred             HHHHHHHHHHHhCC
Q 006490          578 NNVFSRIIWAAEHP  591 (643)
Q Consensus       578 ~~l~~~l~~~~~~~  591 (643)
                      +++|+.+.+.+..+
T Consensus       155 ~~lf~~l~~~~~~~  168 (169)
T cd01892         155 NELFTKLATAAQYP  168 (169)
T ss_pred             HHHHHHHHHHhhCC
Confidence            99999999987543

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04131 Rnd Rnd subfamily

Probab=99.93  E-value=6.2e-25  Score=206.45  Aligned_cols=158  Identities=18%  Similarity=0.295  Sum_probs=136.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill  503 (643)
                      +||+++|++|||||||++++.++.+...+.||....+. ..+..++....+.+|||+|++.+..+  ...++++||++|+
T Consensus         2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~iwDt~G~~~~~~~--~~~~~~~a~~~il   78 (178)
T cd04131           2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYT-ASFEIDEQRIELSLWDTSGSPYYDNV--RPLCYPDSDAVLI   78 (178)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEE-EEEEECCEEEEEEEEECCCchhhhhc--chhhcCCCCEEEE
Confidence            68999999999999999999999998888888876654 45667766778889999999988887  6778999999999


Q ss_pred             EEeCCChhhHHHH-HHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCc-------------cccHHHHHHHHHHhCCCCcEE
Q 006490          504 VYDSSDEYSWKRT-KELLVEVARLGEDSGYGVPCLLIASKDDLKPY-------------TMAVQDSARVTQELGIEPPIP  569 (643)
Q Consensus       504 v~D~s~~~s~~~~-~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~-------------~~~~~~~~~~~~~~~~~~~~~  569 (643)
                      |||++++.||+.+ ..|+..+.+..+    +.|+++|+||+||...             ....++++++++++++.++++
T Consensus        79 vfdit~~~Sf~~~~~~w~~~i~~~~~----~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E  154 (178)
T cd04131          79 CFDISRPETLDSVLKKWRGEIQEFCP----NTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLE  154 (178)
T ss_pred             EEECCChhhHHHHHHHHHHHHHHHCC----CCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEE
Confidence            9999999999996 789999987754    7899999999999641             133678999999999856999


Q ss_pred             eeeccC-C-HHHHHHHHHHHH
Q 006490          570 VSMKSK-D-LNNVFSRIIWAA  588 (643)
Q Consensus       570 vSa~~g-~-i~~l~~~l~~~~  588 (643)
                      |||++| | ++++|..+++.+
T Consensus       155 ~SA~~~~~~v~~~F~~~~~~~  175 (178)
T cd04131         155 CSAFTSEKSVRDIFHVATMAC  175 (178)
T ss_pred             CccCcCCcCHHHHHHHHHHHH
Confidence            999999 7 999999999854

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=99.93  E-value=6.3e-25  Score=212.06  Aligned_cols=168  Identities=26%  Similarity=0.347  Sum_probs=137.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-CeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEE
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA   91 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d   91 (643)
                      +||+|+|++|||||||+++|+.+.|...+.++.. .......++...+.+.||||+|++.+....+.+++.+|++|+|||
T Consensus         2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfd   81 (222)
T cd04173           2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFD   81 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEE
Confidence            7999999999999999999999998777544433 333444566677889999999999999999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCc----------cchhhhhhhHHHHhhcccceEEEeCcccC
Q 006490           92 CNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN----------ATSLEEVMGPIMQQFREIETCVECSATTM  161 (643)
Q Consensus        92 ~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  161 (643)
                      ++++.+++.+...|.+.++..+++.|+||||||+|+..+..          .-...+..+.++++++. .+|+||||+++
T Consensus        82 is~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~-~~y~E~SAk~~  160 (222)
T cd04173          82 ISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGA-VSYVECSSRSS  160 (222)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCC-CEEEEcCCCcC
Confidence            99999999997789998888888999999999999965311          00123456777777764 27999999999


Q ss_pred             CC-hhHHHHHHHHHHhCCCCC
Q 006490          162 IQ-VPDVFYYAQKAVLHPTAP  181 (643)
Q Consensus       162 ~g-i~~l~~~i~~~~~~~~~~  181 (643)
                      .| |+++|+.++...+....+
T Consensus       161 ~~~V~~~F~~~~~~~~~~~~~  181 (222)
T cd04173         161 ERSVRDVFHVATVASLGRGHR  181 (222)
T ss_pred             CcCHHHHHHHHHHHHHhccCC
Confidence            85 999999999987654443

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd01893 Miro1 Miro1 subfamily

Probab=99.93  E-value=9e-25  Score=203.76  Aligned_cols=165  Identities=53%  Similarity=0.908  Sum_probs=134.0

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEEC
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYAC   92 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~   92 (643)
                      +||+|+|++|||||||+++|+++.+...++++....+....+....+.+.+|||||.+.+...+..++..+|++++|||+
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~   80 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSV   80 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEEC
Confidence            48999999999999999999999987666654444455555666788999999999988777777888999999999999


Q ss_pred             CCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHHHHHH
Q 006490           93 NQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQ  172 (643)
Q Consensus        93 ~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~  172 (643)
                      +++.+++.+...|.+.++..+.+.|+++|+||+|+.+.......++....+...+....++++|||++|.|++++|+.+.
T Consensus        81 ~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~~  160 (166)
T cd01893          81 DRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYYAQ  160 (166)
T ss_pred             CCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHHHHH
Confidence            99999999876799988877678999999999999765432112344445555665444799999999999999999998


Q ss_pred             HHHhC
Q 006490          173 KAVLH  177 (643)
Q Consensus       173 ~~~~~  177 (643)
                      +.+.+
T Consensus       161 ~~~~~  165 (166)
T cd01893         161 KAVLH  165 (166)
T ss_pred             HHhcC
Confidence            87654

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=99.93  E-value=1.4e-24  Score=203.47  Aligned_cols=161  Identities=16%  Similarity=0.301  Sum_probs=137.0

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEE
Q 006490          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~il  502 (643)
                      .+||+++|.+|||||||++++.++.+...+.||++..+. ..+...|....+.+||++|++.+..+  +..+++.+|+++
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~l--~~~~~~~~d~~i   78 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYK-QQARIDNEPALLDILDTAGQAEFTAM--RDQYMRCGEGFI   78 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEE-EEEEECCEEEEEEEEeCCCchhhHHH--hHHHhhcCCEEE
Confidence            379999999999999999999999998888888876554 34556656677889999999998887  778899999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHHH
Q 006490          503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNNV  580 (643)
Q Consensus       503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l  580 (643)
                      +|||++++.||+.+..|...+.+.....  ++|+++|+||+|+...+.. .++...+++..+++ +++|||++| |++++
T Consensus        79 lv~d~~~~~Sf~~~~~~~~~i~~~~~~~--~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~-~~e~Sa~~~~~v~~~  155 (172)
T cd04141          79 ICYSVTDRHSFQEASEFKKLITRVRLTE--DIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCP-FFETSAALRHYIDDA  155 (172)
T ss_pred             EEEECCchhHHHHHHHHHHHHHHhcCCC--CCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCE-EEEEecCCCCCHHHH
Confidence            9999999999999998888776653322  7999999999999765443 56778888888886 999999999 99999


Q ss_pred             HHHHHHHHh
Q 006490          581 FSRIIWAAE  589 (643)
Q Consensus       581 ~~~l~~~~~  589 (643)
                      |++|++.+.
T Consensus       156 f~~l~~~~~  164 (172)
T cd04141         156 FHGLVREIR  164 (172)
T ss_pred             HHHHHHHHH
Confidence            999998765

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=99.93  E-value=1.4e-24  Score=210.75  Aligned_cols=162  Identities=17%  Similarity=0.269  Sum_probs=140.0

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i  501 (643)
                      ..+||+++|++|||||||+++|+++.+...+.||+...+.. .+.+.|....+.+|||+|++.+..+  ...++++||++
T Consensus        12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~-~i~~~~~~v~l~iwDTaG~e~~~~~--~~~~~~~ad~v   88 (232)
T cd04174          12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTA-GLETEEQRVELSLWDTSGSPYYDNV--RPLCYSDSDAV   88 (232)
T ss_pred             eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEE-EEEECCEEEEEEEEeCCCchhhHHH--HHHHcCCCcEE
Confidence            35899999999999999999999999998888998876644 4667777788899999999999887  77889999999


Q ss_pred             EEEEeCCChhhHHHH-HHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCc-------------cccHHHHHHHHHHhCCCCc
Q 006490          502 IFVYDSSDEYSWKRT-KELLVEVARLGEDSGYGVPCLLIASKDDLKPY-------------TMAVQDSARVTQELGIEPP  567 (643)
Q Consensus       502 llv~D~s~~~s~~~~-~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~-------------~~~~~~~~~~~~~~~~~~~  567 (643)
                      ++|||++++.||+.+ ..|+..+.+..+    +.|+|+|+||+||...             ....++++++++.+++.++
T Consensus        89 IlVyDit~~~Sf~~~~~~w~~~i~~~~~----~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~  164 (232)
T cd04174          89 LLCFDISRPETVDSALKKWKAEIMDYCP----STRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVY  164 (232)
T ss_pred             EEEEECCChHHHHHHHHHHHHHHHHhCC----CCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEE
Confidence            999999999999984 789999887654    7899999999998641             2336789999999998669


Q ss_pred             EEeeeccC--CHHHHHHHHHHHHhC
Q 006490          568 IPVSMKSK--DLNNVFSRIIWAAEH  590 (643)
Q Consensus       568 ~~vSa~~g--~i~~l~~~l~~~~~~  590 (643)
                      ++|||++|  |++++|..+++.+..
T Consensus       165 ~EtSAktg~~~V~e~F~~~~~~~~~  189 (232)
T cd04174         165 LECSAFTSEKSIHSIFRSASLLCLN  189 (232)
T ss_pred             EEccCCcCCcCHHHHHHHHHHHHHH
Confidence            99999998  599999999998753

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=4.1e-25  Score=187.38  Aligned_cols=163  Identities=21%  Similarity=0.365  Sum_probs=150.3

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (643)
                      ..-+|++++|+.|+|||.|+.+|+..++...+..|++.++..+++.+.|...++.||||+|++++.++  +..++++|-+
T Consensus         7 DyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSV--tRsYYRGAAG   84 (214)
T KOG0086|consen    7 DYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSV--TRSYYRGAAG   84 (214)
T ss_pred             hhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHH--HHHHhccccc
Confidence            34589999999999999999999999999988889999999999999988899999999999999999  8999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHH
Q 006490          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLN  578 (643)
Q Consensus       501 illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~  578 (643)
                      .++|||+++++||+.+..|+.+++...+.   ++-+|+++||.||...+++ ..++.+++++..+. ++++||++| |++
T Consensus        85 AlLVYD~TsrdsfnaLtnWL~DaR~lAs~---nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~-flETSa~TGeNVE  160 (214)
T KOG0086|consen   85 ALLVYDITSRDSFNALTNWLTDARTLASP---NIVVILCGNKKDLDPEREVTFLEASRFAQENELM-FLETSALTGENVE  160 (214)
T ss_pred             eEEEEeccchhhHHHHHHHHHHHHhhCCC---cEEEEEeCChhhcChhhhhhHHHHHhhhccccee-eeeecccccccHH
Confidence            99999999999999999999999887654   7889999999999987766 77888999999997 999999999 999


Q ss_pred             HHHHHHHHHHh
Q 006490          579 NVFSRIIWAAE  589 (643)
Q Consensus       579 ~l~~~l~~~~~  589 (643)
                      +.|-...+.+.
T Consensus       161 EaFl~c~~tIl  171 (214)
T KOG0086|consen  161 EAFLKCARTIL  171 (214)
T ss_pred             HHHHHHHHHHH
Confidence            99998888654

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=99.93  E-value=1.8e-24  Score=201.97  Aligned_cols=161  Identities=22%  Similarity=0.396  Sum_probs=140.1

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEE
Q 006490          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~il  502 (643)
                      .+||+++|++|||||||++++.+..+...+.||.+.++....+..++....+.+||++|++.+..+  ...+++.||+++
T Consensus         3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~--~~~~~~~ad~~i   80 (167)
T cd01867           3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTI--TTAYYRGAMGII   80 (167)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHH--HHHHhCCCCEEE
Confidence            489999999999999999999999998888888887777777777866678889999999888877  677889999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHHH
Q 006490          503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNNV  580 (643)
Q Consensus       503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l  580 (643)
                      +|||++++.+|+.+..|+..+......   +.|+++|+||+|+.+.+.. .+....+++..+++ ++++||++| |++++
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~~  156 (167)
T cd01867          81 LVYDITDEKSFENIRNWMRNIEEHASE---DVERMLVGNKCDMEEKRVVSKEEGEALADEYGIK-FLETSAKANINVEEA  156 (167)
T ss_pred             EEEECcCHHHHHhHHHHHHHHHHhCCC---CCcEEEEEECcccccccCCCHHHHHHHHHHcCCE-EEEEeCCCCCCHHHH
Confidence            999999999999999999998775432   7899999999999864433 56677888888886 999999999 99999


Q ss_pred             HHHHHHHHh
Q 006490          581 FSRIIWAAE  589 (643)
Q Consensus       581 ~~~l~~~~~  589 (643)
                      |+++.+.+.
T Consensus       157 ~~~i~~~~~  165 (167)
T cd01867         157 FFTLAKDIK  165 (167)
T ss_pred             HHHHHHHHH
Confidence            999998764

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=99.93  E-value=1.5e-24  Score=208.80  Aligned_cols=165  Identities=18%  Similarity=0.285  Sum_probs=140.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcC-CCcEEEEEEecCCchhhhhhhccHHhhccCCEEE
Q 006490          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQP-GGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~-g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~il  502 (643)
                      +||+|+|++|||||||+++|+++.+...+.||.+.++....+..+ +....+.+||++|++.+..+  +..++++||+++
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~--~~~~~~~a~~~i   78 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGM--TRVYYRGAVGAI   78 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhh--HHHHhCCCCEEE
Confidence            589999999999999999999999888888888877777777776 66778889999999988887  788899999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhcCC-CCCCCcEEEEEeCCCCCCc-cccHHHHHHHHHHhCCCCcEEeeeccC-CHHH
Q 006490          503 FVYDSSDEYSWKRTKELLVEVARLGED-SGYGVPCLLIASKDDLKPY-TMAVQDSARVTQELGIEPPIPVSMKSK-DLNN  579 (643)
Q Consensus       503 lv~D~s~~~s~~~~~~~~~~i~~~~~~-~~~~~pvilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~vSa~~g-~i~~  579 (643)
                      +|||++++.+|+.+..|+..+...... ...++|+++|+||+|+... ....+.+.++++..++.+++++||++| |+++
T Consensus        79 lv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e  158 (201)
T cd04107          79 IVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEE  158 (201)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHH
Confidence            999999999999999999888654221 1127899999999999743 334677889999999656999999999 9999


Q ss_pred             HHHHHHHHHhC
Q 006490          580 VFSRIIWAAEH  590 (643)
Q Consensus       580 l~~~l~~~~~~  590 (643)
                      +|++|++.+..
T Consensus       159 ~f~~l~~~l~~  169 (201)
T cd04107         159 AMRFLVKNILA  169 (201)
T ss_pred             HHHHHHHHHHH
Confidence            99999997753

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=99.93  E-value=9.5e-26  Score=190.24  Aligned_cols=160  Identities=23%  Similarity=0.268  Sum_probs=141.0

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (643)
Q Consensus        12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v   89 (643)
                      -++.+|+|++|||||+|+.+|..+.|...+..+.+...  ..+.+.+..+++.||||+|++.+..++..++++.|++++|
T Consensus         8 LfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vV   87 (198)
T KOG0079|consen    8 LFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVV   87 (198)
T ss_pred             HHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEE
Confidence            46789999999999999999999999888776665544  3456667889999999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHHH
Q 006490           90 YACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY  169 (643)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  169 (643)
                      ||+++.+||.+.. +|++.++..|+..|-+|||||+|....+.+  ..+..+.++.+.+  ..+|++||+.+.|++..|.
T Consensus        88 YDVTn~ESF~Nv~-rWLeei~~ncdsv~~vLVGNK~d~~~RrvV--~t~dAr~~A~~mg--ie~FETSaKe~~NvE~mF~  162 (198)
T KOG0079|consen   88 YDVTNGESFNNVK-RWLEEIRNNCDSVPKVLVGNKNDDPERRVV--DTEDARAFALQMG--IELFETSAKENENVEAMFH  162 (198)
T ss_pred             EECcchhhhHhHH-HHHHHHHhcCccccceecccCCCCccceee--ehHHHHHHHHhcC--chheehhhhhcccchHHHH
Confidence            9999999999998 699999999999999999999999877665  4455677888877  3699999999999999999


Q ss_pred             HHHHHHh
Q 006490          170 YAQKAVL  176 (643)
Q Consensus       170 ~i~~~~~  176 (643)
                      .|.+.++
T Consensus       163 cit~qvl  169 (198)
T KOG0079|consen  163 CITKQVL  169 (198)
T ss_pred             HHHHHHH
Confidence            9988765

>cd04128 Spg1 Spg1p

Probab=99.93  E-value=1.2e-24  Score=205.31  Aligned_cols=166  Identities=17%  Similarity=0.283  Sum_probs=138.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill  503 (643)
                      +||+++|.+|||||||+++|+++.+...+.||.+.++....+..+|....+.+||++|++.+..+  +..++++||++++
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~--~~~~~~~a~~iil   78 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINM--LPLVCNDAVAILF   78 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHh--hHHHCcCCCEEEE
Confidence            58999999999999999999999998888899888787777888866778889999999998887  6778999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCc----c--ccHHHHHHHHHHhCCCCcEEeeeccC-C
Q 006490          504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPY----T--MAVQDSARVTQELGIEPPIPVSMKSK-D  576 (643)
Q Consensus       504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~----~--~~~~~~~~~~~~~~~~~~~~vSa~~g-~  576 (643)
                      |||++++.||+.+..|+..+.+....   ..| ++|+||+|+...    .  ...+..+++++.++++ +++|||++| |
T Consensus        79 v~D~t~~~s~~~i~~~~~~~~~~~~~---~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~-~~e~SAk~g~~  153 (182)
T cd04128          79 MFDLTRKSTLNSIKEWYRQARGFNKT---AIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAP-LIFCSTSHSIN  153 (182)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhCCC---CCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCE-EEEEeCCCCCC
Confidence            99999999999999999998775432   566 678999999521    1  1245677788888865 999999999 9


Q ss_pred             HHHHHHHHHHHHhCCCCCCC
Q 006490          577 LNNVFSRIIWAAEHPHLNIP  596 (643)
Q Consensus       577 i~~l~~~l~~~~~~~~~~~~  596 (643)
                      ++++|+++.+.+.......|
T Consensus       154 v~~lf~~l~~~l~~~~~~~~  173 (182)
T cd04128         154 VQKIFKIVLAKAFDLPLTIP  173 (182)
T ss_pred             HHHHHHHHHHHHHhcCCChh
Confidence            99999999988764433333

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd01865 Rab3 Rab3 subfamily

Probab=99.93  E-value=2.4e-24  Score=200.76  Aligned_cols=160  Identities=20%  Similarity=0.354  Sum_probs=137.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill  503 (643)
                      +||+++|++|||||||+++|.+.++...+.||.+.++....+..++....+.+||++|++.+..+  +..+++.+|++++
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~--~~~~~~~~~~~l~   79 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTI--TTAYYRGAMGFIL   79 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHH--HHHHccCCcEEEE
Confidence            69999999999999999999999998888888877676666666655677889999999888877  7788999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHHHH
Q 006490          504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNNVF  581 (643)
Q Consensus       504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l~  581 (643)
                      |||++++.+|+.+..|+..+......   +.|+++|+||+|+.+.+.. .+...++++.++++ ++++||++| |++++|
T Consensus        80 v~d~~~~~s~~~~~~~~~~i~~~~~~---~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gv~~l~  155 (165)
T cd01865          80 MYDITNEESFNAVQDWSTQIKTYSWD---NAQVILVGNKCDMEDERVVSSERGRQLADQLGFE-FFEASAKENINVKQVF  155 (165)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCCC---CCCEEEEEECcccCcccccCHHHHHHHHHHcCCE-EEEEECCCCCCHHHHH
Confidence            99999999999999999998765432   6899999999999765433 56677788888886 999999999 999999


Q ss_pred             HHHHHHHh
Q 006490          582 SRIIWAAE  589 (643)
Q Consensus       582 ~~l~~~~~  589 (643)
                      +++.+.+.
T Consensus       156 ~~l~~~~~  163 (165)
T cd01865         156 ERLVDIIC  163 (165)
T ss_pred             HHHHHHHH
Confidence            99988653

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd01875 RhoG RhoG subfamily

Probab=99.93  E-value=1.7e-24  Score=206.33  Aligned_cols=162  Identities=19%  Similarity=0.361  Sum_probs=137.4

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEE
Q 006490          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~il  502 (643)
                      .+||+++|.+|||||||++++..+.+...+.||....+. ..+.+++....+.+|||+|++.+..+  +..++++||++|
T Consensus         3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~e~~~~l--~~~~~~~a~~~i   79 (191)
T cd01875           3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYS-AQTAVDGRTVSLNLWDTAGQEEYDRL--RTLSYPQTNVFI   79 (191)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeE-EEEEECCEEEEEEEEECCCchhhhhh--hhhhccCCCEEE
Confidence            479999999999999999999999998888888876554 33456666778889999999999888  778899999999


Q ss_pred             EEEeCCChhhHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcc-------------ccHHHHHHHHHHhCCCCcE
Q 006490          503 FVYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-------------MAVQDSARVTQELGIEPPI  568 (643)
Q Consensus       503 lv~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~-------------~~~~~~~~~~~~~~~~~~~  568 (643)
                      +|||++++.||+.+. .|...+.....    +.|+++|+||.||.+..             ...++.+.+++.++..+++
T Consensus        80 lvydit~~~Sf~~~~~~w~~~i~~~~~----~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~  155 (191)
T cd01875          80 ICFSIASPSSYENVRHKWHPEVCHHCP----NVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYL  155 (191)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhhCC----CCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEE
Confidence            999999999999997 58887766543    79999999999996532             1245778889998864599


Q ss_pred             EeeeccC-CHHHHHHHHHHHHhCC
Q 006490          569 PVSMKSK-DLNNVFSRIIWAAEHP  591 (643)
Q Consensus       569 ~vSa~~g-~i~~l~~~l~~~~~~~  591 (643)
                      +|||++| |++++|+.+++.+..+
T Consensus       156 e~SAk~g~~v~e~f~~l~~~~~~~  179 (191)
T cd01875         156 ECSALNQDGVKEVFAEAVRAVLNP  179 (191)
T ss_pred             EeCCCCCCCHHHHHHHHHHHHhcc
Confidence            9999999 9999999999988654

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.92  E-value=1e-24  Score=204.68  Aligned_cols=161  Identities=24%  Similarity=0.332  Sum_probs=130.5

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-eeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEE
Q 006490           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (643)
Q Consensus        12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~   90 (643)
                      .+||+++|++|||||||+.+++.+.|...+.++... ......++...+.+.+|||+|++.+...++.+++++|++|+||
T Consensus         1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (174)
T cd01871           1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF   80 (174)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence            479999999999999999999999887765443332 2233345556688999999999999888899999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCc-----------cchhhhhhhHHHHhhcccceEEEeCcc
Q 006490           91 ACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----------ATSLEEVMGPIMQQFREIETCVECSAT  159 (643)
Q Consensus        91 d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~Sa~  159 (643)
                      |++++.+++.+...|.+.+....++.|++||+||+|+.....           . ...+....++++++. .++++|||+
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~-~~~~e~Sa~  158 (174)
T cd01871          81 SLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTP-ITYPQGLAMAKEIGA-VKYLECSAL  158 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCC-CCHHHHHHHHHHcCC-cEEEEeccc
Confidence            999999999997679998877767899999999999864321           1 123445667777764 368999999


Q ss_pred             cCCChhHHHHHHHHH
Q 006490          160 TMIQVPDVFYYAQKA  174 (643)
Q Consensus       160 ~~~gi~~l~~~i~~~  174 (643)
                      +|.|++++|+.+++.
T Consensus       159 ~~~~i~~~f~~l~~~  173 (174)
T cd01871         159 TQKGLKTVFDEAIRA  173 (174)
T ss_pred             ccCCHHHHHHHHHHh
Confidence            999999999988764

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=99.92  E-value=1.3e-24  Score=203.65  Aligned_cols=161  Identities=17%  Similarity=0.312  Sum_probs=132.0

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-eeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEE
Q 006490           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (643)
Q Consensus        12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~   90 (643)
                      .+||+++|++|||||||+++++++.|...+.++.+. ......++...+.+.+|||||++++..+++.+++.+|++|+||
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~   81 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICY   81 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEE
Confidence            479999999999999999999999987665444432 2233455566688999999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHH
Q 006490           91 ACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (643)
Q Consensus        91 d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  168 (643)
                      |++++.+++.+.. |...+.+.  .+++|+++|+||+|+.....+ . .+....+++.++  .++++|||++|.||+++|
T Consensus        82 d~~~~~Sf~~~~~-~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v-~-~~~~~~~a~~~~--~~~~e~Sa~~~~~v~~~f  156 (172)
T cd04141          82 SVTDRHSFQEASE-FKKLITRVRLTEDIPLVLVGNKVDLESQRQV-T-TEEGRNLAREFN--CPFFETSAALRHYIDDAF  156 (172)
T ss_pred             ECCchhHHHHHHH-HHHHHHHhcCCCCCCEEEEEEChhhhhcCcc-C-HHHHHHHHHHhC--CEEEEEecCCCCCHHHHH
Confidence            9999999999984 88777653  357999999999998765544 3 334566777665  379999999999999999


Q ss_pred             HHHHHHHhC
Q 006490          169 YYAQKAVLH  177 (643)
Q Consensus       169 ~~i~~~~~~  177 (643)
                      +++.+.+..
T Consensus       157 ~~l~~~~~~  165 (172)
T cd04141         157 HGLVREIRR  165 (172)
T ss_pred             HHHHHHHHH
Confidence            999987654

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd04109 Rab28 Rab28 subfamily

Probab=99.92  E-value=3.3e-24  Score=208.47  Aligned_cols=165  Identities=21%  Similarity=0.283  Sum_probs=140.3

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCC-CcEEEEEEecCCchhhhhhhccHHhhccCCEEE
Q 006490          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPG-GNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g-~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~il  502 (643)
                      +||+++|++|||||||+++|.+..+...+.||.+.++....+.+++ ....+.+||++|++.+..+  ...+++.||++|
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l--~~~~~~~ad~ii   78 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKM--LDKYIYGAHAVF   78 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHH--HHHHhhcCCEEE
Confidence            5899999999999999999999999888888988777777777764 3567889999999888777  677899999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccc-cHHHHHHHHHHhCCCCcEEeeeccC-CHHHH
Q 006490          503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-DLNNV  580 (643)
Q Consensus       503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l  580 (643)
                      +|||++++.||+.+..|+..+.+.......+.|+++|+||+|+...+. ..+..+.+++.+++. ++++||++| |++++
T Consensus        79 lV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~-~~~iSAktg~gv~~l  157 (215)
T cd04109          79 LVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGME-SCLVSAKTGDRVNLL  157 (215)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCE-EEEEECCCCCCHHHH
Confidence            999999999999999999998876542112578999999999975433 356788889888876 899999999 99999


Q ss_pred             HHHHHHHHhCC
Q 006490          581 FSRIIWAAEHP  591 (643)
Q Consensus       581 ~~~l~~~~~~~  591 (643)
                      |++|++.+...
T Consensus       158 f~~l~~~l~~~  168 (215)
T cd04109         158 FQQLAAELLGV  168 (215)
T ss_pred             HHHHHHHHHhc
Confidence            99999987643

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04117 Rab15 Rab15 subfamily

Probab=99.92  E-value=3.1e-24  Score=199.02  Aligned_cols=158  Identities=23%  Similarity=0.386  Sum_probs=136.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill  503 (643)
                      +||+++|++|||||||+++++++.+...+.||.+.++....+...+....+.+||++|++.+..+  ...+++.+|++++
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~--~~~~~~~~~~~i~   78 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTI--TKQYYRRAQGIFL   78 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhh--HHHHhcCCcEEEE
Confidence            48999999999999999999999998777788887777777777765667889999999888877  6778899999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHHHH
Q 006490          504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNNVF  581 (643)
Q Consensus       504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l~  581 (643)
                      |||++++.||+.+..|+..+......   +.|+++|+||.|+...+.. .++...+++.++++ ++++||++| |++++|
T Consensus        79 v~d~~~~~sf~~~~~~~~~~~~~~~~---~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~Sa~~~~~v~~~f  154 (161)
T cd04117          79 VYDISSERSYQHIMKWVSDVDEYAPE---GVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMD-FFETSACTNSNIKESF  154 (161)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCCC---CCeEEEEEECcccccccCCCHHHHHHHHHHcCCE-EEEEeCCCCCCHHHHH
Confidence            99999999999999999988765432   6899999999999765543 67888888888876 999999999 999999


Q ss_pred             HHHHHH
Q 006490          582 SRIIWA  587 (643)
Q Consensus       582 ~~l~~~  587 (643)
                      ++|.+.
T Consensus       155 ~~l~~~  160 (161)
T cd04117         155 TRLTEL  160 (161)
T ss_pred             HHHHhh
Confidence            999864

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=99.92  E-value=4.3e-24  Score=199.28  Aligned_cols=161  Identities=26%  Similarity=0.441  Sum_probs=139.3

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEE
Q 006490          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~il  502 (643)
                      .+||+++|++|||||||+++++++.+...+.+|.+.++....+...|....+.+||++|++.+..+  ...+++.+|+++
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--~~~~~~~~~~ii   79 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI--TSSYYRGAHGII   79 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHH--HHHHhCcCCEEE
Confidence            479999999999999999999999988877788887777777777766677889999999888776  677889999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHHH
Q 006490          503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNNV  580 (643)
Q Consensus       503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l  580 (643)
                      +|||++++.||..+..|+..+......   +.|+++|+||+|+...... .+.+..+++..+++ ++++||++| |++++
T Consensus        80 ~v~d~~~~~s~~~l~~~~~~~~~~~~~---~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~~  155 (166)
T cd01869          80 IVYDVTDQESFNNVKQWLQEIDRYASE---NVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIP-FLETSAKNATNVEQA  155 (166)
T ss_pred             EEEECcCHHHHHhHHHHHHHHHHhCCC---CCcEEEEEEChhcccccCCCHHHHHHHHHHcCCe-EEEEECCCCcCHHHH
Confidence            999999999999999999998776422   6899999999998765443 56778888888886 999999999 99999


Q ss_pred             HHHHHHHHh
Q 006490          581 FSRIIWAAE  589 (643)
Q Consensus       581 ~~~l~~~~~  589 (643)
                      |+.+.+.+.
T Consensus       156 ~~~i~~~~~  164 (166)
T cd01869         156 FMTMAREIK  164 (166)
T ss_pred             HHHHHHHHH
Confidence            999998764

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04136 Rap_like Rap-like subfamily

Probab=99.92  E-value=3e-24  Score=199.58  Aligned_cols=159  Identities=22%  Similarity=0.389  Sum_probs=133.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill  503 (643)
                      +||+++|++|||||||+++++++.+...+.||+++. ....+..++....+.+||++|++.+..+  +..+++.+|++++
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~~~~il   78 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDS-YRKQIEVDGQQCMLEILDTAGTEQFTAM--RDLYIKNGQGFVL   78 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhh-EEEEEEECCEEEEEEEEECCCccccchH--HHHHhhcCCEEEE
Confidence            699999999999999999999999888887887643 3455666655667789999999988887  6778899999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHHHH
Q 006490          504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNNVF  581 (643)
Q Consensus       504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l~  581 (643)
                      |||++++.+|+.+..|+..+.......  +.|+++|+||+|+...+.. .+....+++.++. +++++||++| |++++|
T Consensus        79 v~d~~~~~s~~~~~~~~~~i~~~~~~~--~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~l~  155 (163)
T cd04136          79 VYSITSQSSFNDLQDLREQILRVKDTE--NVPMVLVGNKCDLEDERVVSREEGQALARQWGC-PFYETSAKSKINVDEVF  155 (163)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEECccccccceecHHHHHHHHHHcCC-eEEEecCCCCCCHHHHH
Confidence            999999999999999998887764433  7999999999999764433 4566677888885 4999999999 999999


Q ss_pred             HHHHHHH
Q 006490          582 SRIIWAA  588 (643)
Q Consensus       582 ~~l~~~~  588 (643)
                      +++.+.+
T Consensus       156 ~~l~~~~  162 (163)
T cd04136         156 ADLVRQI  162 (163)
T ss_pred             HHHHHhc
Confidence            9998754

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=99.92  E-value=9.1e-25  Score=187.65  Aligned_cols=163  Identities=22%  Similarity=0.351  Sum_probs=145.9

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcC-CCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQP-GGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~-g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (643)
                      ..+++.++|++-||||||++.+..++++.-++||.+.++....+.+. |.+.++.+|||+|++++.++  +..+++++-+
T Consensus         7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsi--tksyyrnsvg   84 (213)
T KOG0091|consen    7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSI--TKSYYRNSVG   84 (213)
T ss_pred             EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHH--HHHHhhcccc
Confidence            46899999999999999999999999999999999999888877764 56678899999999999999  9999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHH
Q 006490          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLN  578 (643)
Q Consensus       501 illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~  578 (643)
                      +++|||+++..||+.+..|+.+...+.... .++-+.+|++|+||...+++ .++++.++...|+. ++++||++| |++
T Consensus        85 vllvyditnr~sfehv~~w~~ea~m~~q~P-~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~-FVETSak~g~NVe  162 (213)
T KOG0091|consen   85 VLLVYDITNRESFEHVENWVKEAAMATQGP-DKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMA-FVETSAKNGCNVE  162 (213)
T ss_pred             eEEEEeccchhhHHHHHHHHHHHHHhcCCC-CeeEEEEeccccchhhhccccHHHHHHHHHhcCce-EEEecccCCCcHH
Confidence            999999999999999999999887665521 14446789999999987766 88999999999998 999999999 999


Q ss_pred             HHHHHHHHHH
Q 006490          579 NVFSRIIWAA  588 (643)
Q Consensus       579 ~l~~~l~~~~  588 (643)
                      +.|..|.+.+
T Consensus       163 EAF~mlaqeI  172 (213)
T KOG0091|consen  163 EAFDMLAQEI  172 (213)
T ss_pred             HHHHHHHHHH
Confidence            9999998865

>cd04134 Rho3 Rho3 subfamily

Probab=99.92  E-value=1.9e-24  Score=205.93  Aligned_cols=167  Identities=22%  Similarity=0.265  Sum_probs=131.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-eeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEE
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA   91 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d   91 (643)
                      .||+|+|++|||||||+++|.++.+...+.++.+. .......+...+.+.||||+|++.+......+++.+|++|+|||
T Consensus         1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d   80 (189)
T cd04134           1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS   80 (189)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence            37999999999999999999999887664443322 22223344556889999999999988888899999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccc----------hhhhhhhHHHHhhcccceEEEeCcccC
Q 006490           92 CNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNAT----------SLEEVMGPIMQQFREIETCVECSATTM  161 (643)
Q Consensus        92 ~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~Sa~~~  161 (643)
                      ++++.+++.+...|++.+....++.|++||+||+|+.......          ...+....++...+. .++++|||++|
T Consensus        81 v~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~e~SAk~~  159 (189)
T cd04134          81 VDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINA-LRYLECSAKLN  159 (189)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCC-CEEEEccCCcC
Confidence            9999999998767999998877789999999999997653210          112223445555543 36999999999


Q ss_pred             CChhHHHHHHHHHHhCCCC
Q 006490          162 IQVPDVFYYAQKAVLHPTA  180 (643)
Q Consensus       162 ~gi~~l~~~i~~~~~~~~~  180 (643)
                      .||+++|+++++.+..+..
T Consensus       160 ~~v~e~f~~l~~~~~~~~~  178 (189)
T cd04134         160 RGVNEAFTEAARVALNVRP  178 (189)
T ss_pred             CCHHHHHHHHHHHHhcccc
Confidence            9999999999998876554

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04175 Rap1 Rap1 subgroup

Probab=99.92  E-value=4.6e-24  Score=198.63  Aligned_cols=160  Identities=21%  Similarity=0.393  Sum_probs=134.6

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill  503 (643)
                      +||+++|.+|||||||+++++.+.+...+.||++..+. ..+...+....+.+||++|++.+..+  +..+++.+|++++
T Consensus         2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~d~~il   78 (164)
T cd04175           2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTEQFTAM--RDLYMKNGQGFVL   78 (164)
T ss_pred             cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEE-EEEEECCEEEEEEEEECCCcccchhH--HHHHHhhCCEEEE
Confidence            68999999999999999999998887777788776553 45666655667789999999998887  7788999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHHHH
Q 006490          504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNNVF  581 (643)
Q Consensus       504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l~  581 (643)
                      |||++++.+|+.+..|+..+.......  +.|+++|+||+|+...... .+....+++.++++ ++++||++| |++++|
T Consensus        79 v~d~~~~~s~~~~~~~~~~i~~~~~~~--~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~~~  155 (164)
T cd04175          79 VYSITAQSTFNDLQDLREQILRVKDTE--DVPMILVGNKCDLEDERVVGKEQGQNLARQWGCA-FLETSAKAKINVNEIF  155 (164)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEECCcchhccEEcHHHHHHHHHHhCCE-EEEeeCCCCCCHHHHH
Confidence            999999999999999998887654323  7999999999999764433 45567788888875 999999999 999999


Q ss_pred             HHHHHHHh
Q 006490          582 SRIIWAAE  589 (643)
Q Consensus       582 ~~l~~~~~  589 (643)
                      .++.+.+.
T Consensus       156 ~~l~~~l~  163 (164)
T cd04175         156 YDLVRQIN  163 (164)
T ss_pred             HHHHHHhh
Confidence            99987653

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.92  E-value=6e-24  Score=197.20  Aligned_cols=159  Identities=20%  Similarity=0.356  Sum_probs=134.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill  503 (643)
                      +||+++|++|||||||+|+|+++.+...+.||+++.+ ...+..++....+.+||++|++.+..+  +..+++.+|++++
T Consensus         2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l--~~~~~~~~~~~i~   78 (162)
T cd04138           2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAM--RDQYMRTGEGFLC   78 (162)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHH--HHHHHhcCCEEEE
Confidence            6899999999999999999999998888878877654 444556655566778999999988887  7788999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC-CHHHHHH
Q 006490          504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNVFS  582 (643)
Q Consensus       504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l~~  582 (643)
                      |||++++.+|+.+..|+..+.+.....  +.|+++|+||+|+............+++.++++ ++++||++| |++++|+
T Consensus        79 v~~~~~~~s~~~~~~~~~~i~~~~~~~--~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~l~~  155 (162)
T cd04138          79 VFAINSRKSFEDIHTYREQIKRVKDSD--DVPMVLVGNKCDLAARTVSSRQGQDLAKSYGIP-YIETSAKTRQGVEEAFY  155 (162)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEECcccccceecHHHHHHHHHHhCCe-EEEecCCCCCCHHHHHH
Confidence            999999999999999988887764333  789999999999977444466777888888876 999999999 9999999


Q ss_pred             HHHHHH
Q 006490          583 RIIWAA  588 (643)
Q Consensus       583 ~l~~~~  588 (643)
                      ++++.+
T Consensus       156 ~l~~~~  161 (162)
T cd04138         156 TLVREI  161 (162)
T ss_pred             HHHHHh
Confidence            998754

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd01874 Cdc42 Cdc42 subfamily

Probab=99.92  E-value=3.7e-24  Score=201.02  Aligned_cols=158  Identities=23%  Similarity=0.383  Sum_probs=132.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill  503 (643)
                      +||+++|.+|||||||++++.++.+...+.||++..+.. .+...+....+.+||++|++.+..+  +..+++.+|++|+
T Consensus         2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~-~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~a~~~il   78 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRL--RPLSYPQTDVFLV   78 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEE-EEEECCEEEEEEEEECCCccchhhh--hhhhcccCCEEEE
Confidence            699999999999999999999999988888888876653 3456655667889999999988777  6678899999999


Q ss_pred             EEeCCChhhHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcc-------------ccHHHHHHHHHHhCCCCcEE
Q 006490          504 VYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-------------MAVQDSARVTQELGIEPPIP  569 (643)
Q Consensus       504 v~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~-------------~~~~~~~~~~~~~~~~~~~~  569 (643)
                      |||++++.+|+.+. .|+..+....+    +.|+++|+||+|+....             ...+++..+++..+..++++
T Consensus        79 v~d~~~~~s~~~~~~~w~~~i~~~~~----~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e  154 (175)
T cd01874          79 CFSVVSPSSFENVKEKWVPEITHHCP----KTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVE  154 (175)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhCC----CCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEE
Confidence            99999999999997 48888876543    78999999999986531             12556777888888545999


Q ss_pred             eeeccC-CHHHHHHHHHHHH
Q 006490          570 VSMKSK-DLNNVFSRIIWAA  588 (643)
Q Consensus       570 vSa~~g-~i~~l~~~l~~~~  588 (643)
                      |||++| |++++|+.+++++
T Consensus       155 ~SA~tg~~v~~~f~~~~~~~  174 (175)
T cd01874         155 CSALTQKGLKNVFDEAILAA  174 (175)
T ss_pred             ecCCCCCCHHHHHHHHHHHh
Confidence            999999 9999999998864

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.92  E-value=6.5e-24  Score=198.23  Aligned_cols=163  Identities=18%  Similarity=0.280  Sum_probs=138.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill  503 (643)
                      +||+++|++|||||||+|+|+++++...+.||.+.++....+...+....+.+||++|++.+..+  +..+++.+|++|+
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~d~~il   78 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEV--RNEFYKDTQGVLL   78 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHH--HHHHhccCCEEEE
Confidence            58999999999999999999999988888788888777777877777778889999999888776  6778899999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhcCCC--CCCCcEEEEEeCCCCCCccc-cHHHHHHHHHHhCCCCcEEeeeccC-CHHH
Q 006490          504 VYDSSDEYSWKRTKELLVEVARLGEDS--GYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-DLNN  579 (643)
Q Consensus       504 v~D~s~~~s~~~~~~~~~~i~~~~~~~--~~~~pvilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSa~~g-~i~~  579 (643)
                      |||++++.+|+.+..|+..+.+.....  ..+.|+++|+||+|+..+.. ..+....+++..++. ++++||++| |+++
T Consensus        79 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~  157 (168)
T cd04119          79 VYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFK-YFETSACTGEGVNE  157 (168)
T ss_pred             EEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCe-EEEEECCCCCCHHH
Confidence            999999999999999999988765420  01689999999999974332 356666788888865 999999999 9999


Q ss_pred             HHHHHHHHHh
Q 006490          580 VFSRIIWAAE  589 (643)
Q Consensus       580 l~~~l~~~~~  589 (643)
                      +|++|.+.+.
T Consensus       158 l~~~l~~~l~  167 (168)
T cd04119         158 MFQTLFSSIV  167 (168)
T ss_pred             HHHHHHHHHh
Confidence            9999998753

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd01864 Rab19 Rab19 subfamily

Probab=99.92  E-value=6.8e-24  Score=197.70  Aligned_cols=160  Identities=23%  Similarity=0.380  Sum_probs=137.0

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEE
Q 006490          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~il  502 (643)
                      .+||+++|++|||||||++++.++.+...+.+|.+.++....+...+....+.+||++|++.+..+  +...++.+|+++
T Consensus         3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~--~~~~~~~~d~~l   80 (165)
T cd01864           3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTI--TQSYYRSANGAI   80 (165)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHH--HHHHhccCCEEE
Confidence            489999999999999999999999888777777776677777777755567889999999888776  678889999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHHH
Q 006490          503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNNV  580 (643)
Q Consensus       503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l  580 (643)
                      +|||++++.+|+.+..|+..+......   +.|+++|+||+|+...+.. .+...++++.++...++++||++| |++++
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~---~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~  157 (165)
T cd01864          81 IAYDITRRSSFESVPHWIEEVEKYGAS---NVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEA  157 (165)
T ss_pred             EEEECcCHHHHHhHHHHHHHHHHhCCC---CCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHH
Confidence            999999999999999999998765432   7899999999999765433 567788888888766899999999 99999


Q ss_pred             HHHHHHH
Q 006490          581 FSRIIWA  587 (643)
Q Consensus       581 ~~~l~~~  587 (643)
                      |+.+.+.
T Consensus       158 ~~~l~~~  164 (165)
T cd01864         158 FLLMATE  164 (165)
T ss_pred             HHHHHHh
Confidence            9999864

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01868 Rab11_like Rab11-like

Probab=99.92  E-value=8.7e-24  Score=196.96  Aligned_cols=160  Identities=19%  Similarity=0.362  Sum_probs=137.6

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEE
Q 006490          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~il  502 (643)
                      .+||+++|++|||||||++++++..+...+.||.+.++....+..++....+.+||++|++.+..+  ...+++.+++++
T Consensus         3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--~~~~~~~~~~~i   80 (165)
T cd01868           3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAI--TSAYYRGAVGAL   80 (165)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHH--HHHHHCCCCEEE
Confidence            479999999999999999999999988888888887777777777765567889999999888877  677889999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHHH
Q 006490          503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNNV  580 (643)
Q Consensus       503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l  580 (643)
                      +|||++++.+|+.+..|+..+.+....   +.|+++|+||+|+...+.. .+....++...++. ++++||++| |++++
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~l  156 (165)
T cd01868          81 LVYDITKKQTFENVERWLKELRDHADS---NIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLS-FIETSALDGTNVEEA  156 (165)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhCCC---CCeEEEEEECccccccccCCHHHHHHHHHHcCCE-EEEEECCCCCCHHHH
Confidence            999999999999999999998776542   6899999999999764433 55677788777775 999999999 99999


Q ss_pred             HHHHHHHH
Q 006490          581 FSRIIWAA  588 (643)
Q Consensus       581 ~~~l~~~~  588 (643)
                      |+.+.+.+
T Consensus       157 ~~~l~~~i  164 (165)
T cd01868         157 FKQLLTEI  164 (165)
T ss_pred             HHHHHHHh
Confidence            99998754

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04127 Rab27A Rab27a subfamily

Probab=99.92  E-value=9.2e-24  Score=199.84  Aligned_cols=163  Identities=13%  Similarity=0.251  Sum_probs=136.9

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcC----------CCcEEEEEEecCCchhhhhhhcc
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQP----------GGNKKTLILQEIPEEGVKKILSN  491 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~----------g~~~~~~i~d~~g~~~~~~~~~~  491 (643)
                      ..+||+++|++|||||||++++.+..+...+.+|.+.++....+...          +....+.+||++|++.+..+  +
T Consensus         3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~   80 (180)
T cd04127           3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSL--T   80 (180)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHH--H
Confidence            35899999999999999999999999988887887766655444332          24567789999999988877  7


Q ss_pred             HHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEe
Q 006490          492 KEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPV  570 (643)
Q Consensus       492 ~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~v  570 (643)
                      ..+++++|++++|||++++.||+.+..|+..+.......  +.|+++|+||+|+.+.+.. .+.+.++++.++++ ++++
T Consensus        81 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~  157 (180)
T cd04127          81 TAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCE--NPDIVLCGNKADLEDQRQVSEEQAKALADKYGIP-YFET  157 (180)
T ss_pred             HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCcEEEEEeCccchhcCccCHHHHHHHHHHcCCe-EEEE
Confidence            788999999999999999999999999999887654322  7899999999999764433 56788899999986 9999


Q ss_pred             eeccC-CHHHHHHHHHHHHh
Q 006490          571 SMKSK-DLNNVFSRIIWAAE  589 (643)
Q Consensus       571 Sa~~g-~i~~l~~~l~~~~~  589 (643)
                      ||++| |++++|+.|.+.+.
T Consensus       158 Sak~~~~v~~l~~~l~~~~~  177 (180)
T cd04127         158 SAATGTNVEKAVERLLDLVM  177 (180)
T ss_pred             eCCCCCCHHHHHHHHHHHHH
Confidence            99999 99999999998654

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=99.92  E-value=8.7e-24  Score=197.58  Aligned_cols=160  Identities=23%  Similarity=0.330  Sum_probs=137.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEEE
Q 006490          425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV  504 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv  504 (643)
                      ||+++|++|||||||+++++++.+...+.||++.++....+...|....+.+||++|++.+..+  +..+++++|++++|
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~ad~~ilv   79 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCI--ASTYYRGAQAIIIV   79 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhh--HHHHhcCCCEEEEE
Confidence            7999999999999999999999998888889888777777777766778889999999998887  77889999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccc---cHHHHHHHHHHhCCCCcEEeeeccC-CHHHH
Q 006490          505 YDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM---AVQDSARVTQELGIEPPIPVSMKSK-DLNNV  580 (643)
Q Consensus       505 ~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l  580 (643)
                      ||++++.+++.+..|+..+.+.....  ..|+++|+||+|+.+...   ..+....++++++.. ++++||++| |++++
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~--~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~e~Sa~~g~~v~~l  156 (170)
T cd04108          80 FDLTDVASLEHTRQWLEDALKENDPS--SVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAE-YWSVSALSGENVREF  156 (170)
T ss_pred             EECcCHHHHHHHHHHHHHHHHhcCCC--CCeEEEEEEChhcCccccccccHHHHHHHHHHcCCe-EEEEECCCCCCHHHH
Confidence            99999999999999999886654322  578999999999865433   245566778888875 999999999 99999


Q ss_pred             HHHHHHHHh
Q 006490          581 FSRIIWAAE  589 (643)
Q Consensus       581 ~~~l~~~~~  589 (643)
                      |+.+++.+.
T Consensus       157 f~~l~~~~~  165 (170)
T cd04108         157 FFRVAALTF  165 (170)
T ss_pred             HHHHHHHHH
Confidence            999998774

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd04136 Rap_like Rap-like subfamily

Probab=99.92  E-value=3.1e-24  Score=199.50  Aligned_cols=159  Identities=25%  Similarity=0.321  Sum_probs=127.9

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-eeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEE
Q 006490           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (643)
Q Consensus        12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~   90 (643)
                      .+||+++|++|||||||+++++.+.+...++++.+. ......++...+.+.+|||||++++...+..+++.+|++++||
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (163)
T cd04136           1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence            379999999999999999999999887765554432 2233344555678899999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHH
Q 006490           91 ACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (643)
Q Consensus        91 d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  168 (643)
                      |++++.+++.+.. |...+...  ..++|+++|+||+|+......  ..+....+.+.++  .+++++||++|.|+.++|
T Consensus        81 d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~l~  155 (163)
T cd04136          81 SITSQSSFNDLQD-LREQILRVKDTENVPMVLVGNKCDLEDERVV--SREEGQALARQWG--CPFYETSAKSKINVDEVF  155 (163)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccccee--cHHHHHHHHHHcC--CeEEEecCCCCCCHHHHH
Confidence            9999999999884 88777653  357999999999998764443  2333455666665  479999999999999999


Q ss_pred             HHHHHHH
Q 006490          169 YYAQKAV  175 (643)
Q Consensus       169 ~~i~~~~  175 (643)
                      +++.+.+
T Consensus       156 ~~l~~~~  162 (163)
T cd04136         156 ADLVRQI  162 (163)
T ss_pred             HHHHHhc
Confidence            9998754

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04122 Rab14 Rab14 subfamily

Probab=99.92  E-value=3.9e-24  Score=199.48  Aligned_cols=160  Identities=23%  Similarity=0.320  Sum_probs=130.6

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (643)
Q Consensus        12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v   89 (643)
                      .+||+++|++|||||||+++|+++.|...++++.+...  ....+....+.+.+|||||++.+......+++++|++|+|
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   81 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   81 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence            37999999999999999999999998777665444332  2234555678899999999999888889999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHH
Q 006490           90 YACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (643)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  168 (643)
                      ||++++.+++.+. .|++.++.. .++.|+++|+||+|+...... . .+....+++..+  .++++|||++|.||+++|
T Consensus        82 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~-~-~~~~~~~~~~~~--~~~~e~Sa~~~~~i~e~f  156 (166)
T cd04122          82 YDITRRSTYNHLS-SWLTDARNLTNPNTVIFLIGNKADLEAQRDV-T-YEEAKQFADENG--LLFLECSAKTGENVEDAF  156 (166)
T ss_pred             EECCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECcccccccCc-C-HHHHHHHHHHcC--CEEEEEECCCCCCHHHHH
Confidence            9999999999998 488887664 357899999999999766544 3 344566666654  379999999999999999


Q ss_pred             HHHHHHHh
Q 006490          169 YYAQKAVL  176 (643)
Q Consensus       169 ~~i~~~~~  176 (643)
                      ..+.+.+.
T Consensus       157 ~~l~~~~~  164 (166)
T cd04122         157 LETAKKIY  164 (166)
T ss_pred             HHHHHHHh
Confidence            99887653

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04110 Rab35 Rab35 subfamily

Probab=99.92  E-value=1.1e-23  Score=202.35  Aligned_cols=161  Identities=24%  Similarity=0.380  Sum_probs=140.4

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i  501 (643)
                      ..+||+|+|++|||||||+++|.+..+...+.||.+.++....+++.|....+.+||++|++.+..+  +..+++.+|++
T Consensus         5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~--~~~~~~~a~~i   82 (199)
T cd04110           5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTI--TSTYYRGTHGV   82 (199)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHH--HHHHhCCCcEE
Confidence            4689999999999999999999999988777788887777778888866677889999999888777  67888999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHH
Q 006490          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNN  579 (643)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~  579 (643)
                      ++|||++++.+|+.+..|+..+.....    ..|+++|+||+|+...... .+....+++..++. ++++||++| |+++
T Consensus        83 ilv~D~~~~~s~~~~~~~~~~i~~~~~----~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~-~~e~Sa~~~~gi~~  157 (199)
T cd04110          83 IVVYDVTNGESFVNVKRWLQEIEQNCD----DVCKVLVGNKNDDPERKVVETEDAYKFAGQMGIS-LFETSAKENINVEE  157 (199)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhCC----CCCEEEEEECcccccccccCHHHHHHHHHHcCCE-EEEEECCCCcCHHH
Confidence            999999999999999999998877543    7899999999999765443 56677788888876 999999999 9999


Q ss_pred             HHHHHHHHHh
Q 006490          580 VFSRIIWAAE  589 (643)
Q Consensus       580 l~~~l~~~~~  589 (643)
                      +|++|.+.+.
T Consensus       158 lf~~l~~~~~  167 (199)
T cd04110         158 MFNCITELVL  167 (199)
T ss_pred             HHHHHHHHHH
Confidence            9999999775

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=99.92  E-value=1e-23  Score=203.73  Aligned_cols=161  Identities=16%  Similarity=0.245  Sum_probs=136.6

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill  503 (643)
                      +||+|+|.+|||||||+++|.++.+...|.||....+.. .+...+....+.+||++|++.+..+  +..+++.+|++|+
T Consensus         2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~-~~~~~~~~v~L~iwDt~G~e~~~~l--~~~~~~~~d~ill   78 (222)
T cd04173           2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTA-SFEIDKRRIELNMWDTSGSSYYDNV--RPLAYPDSDAVLI   78 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEE-EEEECCEEEEEEEEeCCCcHHHHHH--hHHhccCCCEEEE
Confidence            689999999999999999999999998888998876653 4556666778889999999998887  7788999999999


Q ss_pred             EEeCCChhhHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCc-------------cccHHHHHHHHHHhCCCCcEE
Q 006490          504 VYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPY-------------TMAVQDSARVTQELGIEPPIP  569 (643)
Q Consensus       504 v~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~-------------~~~~~~~~~~~~~~~~~~~~~  569 (643)
                      |||++++.+|+.+. .|...+....+    +.|+|+|+||+|+...             ....++...++++++..++++
T Consensus        79 vfdis~~~Sf~~i~~~w~~~~~~~~~----~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E  154 (222)
T cd04173          79 CFDISRPETLDSVLKKWQGETQEFCP----NAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVE  154 (222)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCC----CCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEE
Confidence            99999999999985 57777665543    7999999999999652             123568889999999756999


Q ss_pred             eeeccC-C-HHHHHHHHHHHHhCC
Q 006490          570 VSMKSK-D-LNNVFSRIIWAAEHP  591 (643)
Q Consensus       570 vSa~~g-~-i~~l~~~l~~~~~~~  591 (643)
                      |||+++ + ++++|+.++.++...
T Consensus       155 ~SAk~~~~~V~~~F~~~~~~~~~~  178 (222)
T cd04173         155 CSSRSSERSVRDVFHVATVASLGR  178 (222)
T ss_pred             cCCCcCCcCHHHHHHHHHHHHHhc
Confidence            999997 5 999999999977543

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd04116 Rab9 Rab9 subfamily

Probab=99.92  E-value=1.2e-23  Score=197.09  Aligned_cols=164  Identities=16%  Similarity=0.291  Sum_probs=138.5

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i  501 (643)
                      ..+||+++|++|||||||+++++++.+...+.++.+.++....+...+....+.+||++|++.+..+  +..+++.+|++
T Consensus         4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~--~~~~~~~~d~~   81 (170)
T cd04116           4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSL--RTPFYRGSDCC   81 (170)
T ss_pred             eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHh--HHHHhcCCCEE
Confidence            4589999999999999999999999888777777776666666667766778889999999988887  77889999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCC-CCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC-CHHH
Q 006490          502 IFVYDSSDEYSWKRTKELLVEVARLGEDS-GYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNN  579 (643)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g-~i~~  579 (643)
                      ++|||++++.+|+.+..|...+....... ..+.|+++|+||+|+.......+++.++++.++..+++++||++| |+.+
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~  161 (170)
T cd04116          82 LLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRENGDYPYFETSAKDATNVAA  161 (170)
T ss_pred             EEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHH
Confidence            99999999999999999998887654321 126899999999999754444677888999888766999999999 9999


Q ss_pred             HHHHHHHH
Q 006490          580 VFSRIIWA  587 (643)
Q Consensus       580 l~~~l~~~  587 (643)
                      +|+.+++.
T Consensus       162 ~~~~~~~~  169 (170)
T cd04116         162 AFEEAVRR  169 (170)
T ss_pred             HHHHHHhh
Confidence            99999864

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04175 Rap1 Rap1 subgroup

Probab=99.92  E-value=4.7e-24  Score=198.54  Aligned_cols=159  Identities=25%  Similarity=0.359  Sum_probs=128.3

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe-eeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEE
Q 006490           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (643)
Q Consensus        12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~   90 (643)
                      ++||+++|++|||||||+++++.+.+...++++.+.. .....+....+.+.+|||||++.+...+..+++.+|++++||
T Consensus         1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T cd04175           1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY   80 (164)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence            4799999999999999999999888876655544432 233445555778899999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHH
Q 006490           91 ACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (643)
Q Consensus        91 d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  168 (643)
                      |++++.+++.+.. |...+...  ..+.|+++|+||+|+...... . .+....+++.++  .+++++||++|.|++++|
T Consensus        81 d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~-~-~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~~~  155 (164)
T cd04175          81 SITAQSTFNDLQD-LREQILRVKDTEDVPMILVGNKCDLEDERVV-G-KEQGQNLARQWG--CAFLETSAKAKINVNEIF  155 (164)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECCcchhccEE-c-HHHHHHHHHHhC--CEEEEeeCCCCCCHHHHH
Confidence            9999999999874 77777542  358999999999999765443 2 233456666665  379999999999999999


Q ss_pred             HHHHHHH
Q 006490          169 YYAQKAV  175 (643)
Q Consensus       169 ~~i~~~~  175 (643)
                      +++.+.+
T Consensus       156 ~~l~~~l  162 (164)
T cd04175         156 YDLVRQI  162 (164)
T ss_pred             HHHHHHh
Confidence            9998754

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=99.92  E-value=7.2e-24  Score=206.10  Aligned_cols=161  Identities=16%  Similarity=0.273  Sum_probs=137.3

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (643)
                      ...+||+++|.+|||||||+++++.+.+...+.||.+.++....+...++..++.+||++|++.+..+  +..+++.+|+
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~~~   88 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL--RDGYYIHGQC   88 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhh--hHHHcccccE
Confidence            45689999999999999999999999988888888887766666666656678889999999988877  6778999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC-CHHH
Q 006490          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNN  579 (643)
Q Consensus       501 illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g-~i~~  579 (643)
                      +|+|||++++.+|+.+..|+..+.+...    +.|+++|+||+|+.......+.. .+++..++. +++|||++| |+++
T Consensus        89 ~ilvfD~~~~~s~~~i~~w~~~i~~~~~----~~piilvgNK~Dl~~~~v~~~~~-~~~~~~~~~-~~e~SAk~~~~i~~  162 (219)
T PLN03071         89 AIIMFDVTARLTYKNVPTWHRDLCRVCE----NIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQ-YYEISAKSNYNFEK  162 (219)
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhCC----CCcEEEEEEchhhhhccCCHHHH-HHHHhcCCE-EEEcCCCCCCCHHH
Confidence            9999999999999999999999987643    79999999999996543333344 667777776 999999999 9999


Q ss_pred             HHHHHHHHHh
Q 006490          580 VFSRIIWAAE  589 (643)
Q Consensus       580 l~~~l~~~~~  589 (643)
                      +|++|++.+.
T Consensus       163 ~f~~l~~~~~  172 (219)
T PLN03071        163 PFLYLARKLA  172 (219)
T ss_pred             HHHHHHHHHH
Confidence            9999998875

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=99.92  E-value=1.3e-23  Score=204.22  Aligned_cols=163  Identities=18%  Similarity=0.274  Sum_probs=131.9

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEE
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV   86 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i   86 (643)
                      ....+||+++|++|||||||+++++.+.+...+.++.+...  .........+.+.+|||+|++.+...+..+++.+|++
T Consensus        10 ~~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~   89 (219)
T PLN03071         10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (219)
T ss_pred             CCCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEE
Confidence            37789999999999999999999999988776555554433  2233345568999999999999988889999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhH
Q 006490           87 VLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (643)
Q Consensus        87 l~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  166 (643)
                      |+|||++++.+++.+. .|++.+++.+.++|++|||||+|+.... + .. +.. .+....+  .++++|||++|.||++
T Consensus        90 ilvfD~~~~~s~~~i~-~w~~~i~~~~~~~piilvgNK~Dl~~~~-v-~~-~~~-~~~~~~~--~~~~e~SAk~~~~i~~  162 (219)
T PLN03071         90 IIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ-V-KA-KQV-TFHRKKN--LQYYEISAKSNYNFEK  162 (219)
T ss_pred             EEEEeCCCHHHHHHHH-HHHHHHHHhCCCCcEEEEEEchhhhhcc-C-CH-HHH-HHHHhcC--CEEEEcCCCCCCCHHH
Confidence            9999999999999997 5999998877889999999999986432 2 12 222 3444433  3699999999999999


Q ss_pred             HHHHHHHHHhCC
Q 006490          167 VFYYAQKAVLHP  178 (643)
Q Consensus       167 l~~~i~~~~~~~  178 (643)
                      +|+++.+.+...
T Consensus       163 ~f~~l~~~~~~~  174 (219)
T PLN03071        163 PFLYLARKLAGD  174 (219)
T ss_pred             HHHHHHHHHHcC
Confidence            999999988643

>cd01866 Rab2 Rab2 subfamily

Probab=99.92  E-value=1.5e-23  Score=195.88  Aligned_cols=161  Identities=19%  Similarity=0.322  Sum_probs=138.5

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEE
Q 006490          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~il  502 (643)
                      .+||+|+|++|||||||++++++.++...+.+|.+.++....+...+....+.+||++|++.+..+  ...+++.+|+++
T Consensus         4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d~il   81 (168)
T cd01866           4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSI--TRSYYRGAAGAL   81 (168)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHH--HHHHhccCCEEE
Confidence            489999999999999999999999988888777777777777777766668889999999888777  678889999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccc-cHHHHHHHHHHhCCCCcEEeeeccC-CHHHH
Q 006490          503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-DLNNV  580 (643)
Q Consensus       503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l  580 (643)
                      +|||++++.+++.+..|+..+......   +.|+++|+||+|+..... ..+..+.++...++. ++++||+++ |++++
T Consensus        82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~e~Sa~~~~~i~~~  157 (168)
T cd01866          82 LVYDITRRETFNHLTSWLEDARQHSNS---NMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLI-FMETSAKTASNVEEA  157 (168)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCCC---CCcEEEEEECcccccccCCCHHHHHHHHHHcCCE-EEEEeCCCCCCHHHH
Confidence            999999999999999999988775432   799999999999975433 356777888888876 999999999 99999


Q ss_pred             HHHHHHHHh
Q 006490          581 FSRIIWAAE  589 (643)
Q Consensus       581 ~~~l~~~~~  589 (643)
                      |..+.+.+.
T Consensus       158 ~~~~~~~~~  166 (168)
T cd01866         158 FINTAKEIY  166 (168)
T ss_pred             HHHHHHHHH
Confidence            999988763

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd04111 Rab39 Rab39 subfamily

Probab=99.92  E-value=1.4e-23  Score=203.06  Aligned_cols=162  Identities=20%  Similarity=0.347  Sum_probs=139.3

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcC-CCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQP-GGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~-g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i  501 (643)
                      .+||+|+|++|||||||+++|+++.+...+.||++.++....+.+. |....+.+||++|++.+..+  +..+++.+|++
T Consensus         2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~d~i   79 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSI--TRSYYRNSVGV   79 (211)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHH--HHHHhcCCcEE
Confidence            4799999999999999999999999988888888877777777664 44567889999999988877  67889999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHH
Q 006490          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNN  579 (643)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~  579 (643)
                      ++|||++++.||+.+..|+..+.+.....  ..|+++|+||+|+...+.. .+....+++.+++. ++++||++| |+++
T Consensus        80 ilv~D~~~~~Sf~~l~~~~~~i~~~~~~~--~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~Sak~g~~v~e  156 (211)
T cd04111          80 LLVFDITNRESFEHVHDWLEEARSHIQPH--RPVFILVGHKCDLESQRQVTREEAEKLAKDLGMK-YIETSARTGDNVEE  156 (211)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCeEEEEEEccccccccccCHHHHHHHHHHhCCE-EEEEeCCCCCCHHH
Confidence            99999999999999999999987664433  6789999999999764443 66788899999965 999999999 9999


Q ss_pred             HHHHHHHHHh
Q 006490          580 VFSRIIWAAE  589 (643)
Q Consensus       580 l~~~l~~~~~  589 (643)
                      +|+.|.+.+.
T Consensus       157 ~f~~l~~~~~  166 (211)
T cd04111         157 AFELLTQEIY  166 (211)
T ss_pred             HHHHHHHHHH
Confidence            9999998654

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=2.7e-24  Score=194.52  Aligned_cols=165  Identities=19%  Similarity=0.208  Sum_probs=140.6

Q ss_pred             CCCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCC
Q 006490            7 SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRAD   84 (643)
Q Consensus         7 ~~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad   84 (643)
                      ....-.+||+++|++|||||-|+.||+.+.|..+...+.+...  ....++++.++.+||||+|+++|...+..++++|.
T Consensus         9 ~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAv   88 (222)
T KOG0087|consen    9 EEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAV   88 (222)
T ss_pred             cccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccc
Confidence            3455678999999999999999999999999877555444433  55677788899999999999999999999999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCC
Q 006490           85 AVVLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQ  163 (643)
Q Consensus        85 ~il~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  163 (643)
                      ++++|||++.+.+|+++. +|+.+++.+. ++++++|||||+||.+.+.+  ..+....+++..+  ..++++||..+.|
T Consensus        89 GAllVYDITr~~Tfenv~-rWL~ELRdhad~nivimLvGNK~DL~~lraV--~te~~k~~Ae~~~--l~f~EtSAl~~tN  163 (222)
T KOG0087|consen   89 GALLVYDITRRQTFENVE-RWLKELRDHADSNIVIMLVGNKSDLNHLRAV--PTEDGKAFAEKEG--LFFLETSALDATN  163 (222)
T ss_pred             eeEEEEechhHHHHHHHH-HHHHHHHhcCCCCeEEEEeecchhhhhcccc--chhhhHhHHHhcC--ceEEEeccccccc
Confidence            999999999999999988 6999999875 79999999999999987666  3444566666655  2599999999999


Q ss_pred             hhHHHHHHHHHHh
Q 006490          164 VPDVFYYAQKAVL  176 (643)
Q Consensus       164 i~~l~~~i~~~~~  176 (643)
                      |.+.|..++..+.
T Consensus       164 Ve~aF~~~l~~I~  176 (222)
T KOG0087|consen  164 VEKAFERVLTEIY  176 (222)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999998877664

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.92  E-value=1e-23  Score=196.43  Aligned_cols=159  Identities=16%  Similarity=0.262  Sum_probs=132.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill  503 (643)
                      +||+++|++|||||||+++++.+.+...+.+|.+.++....+...++...+.+||++|++.+..+  ....+..+|++|+
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~d~~i~   78 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGL--RDGYYIGGQCAII   78 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccc--cHHHhcCCCEEEE
Confidence            48999999999999999999988877777777776665555566656678889999999887776  6678899999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC-CHHHHHH
Q 006490          504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNVFS  582 (643)
Q Consensus       504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l~~  582 (643)
                      |||++++.+|+.+..|+..+.....    ++|+++|+||+|+.... ......++++..++. ++++||++| |++++|+
T Consensus        79 v~d~~~~~s~~~~~~~~~~i~~~~~----~~piiiv~nK~Dl~~~~-~~~~~~~~~~~~~~~-~~e~Sa~~~~~v~~~f~  152 (166)
T cd00877          79 MFDVTSRVTYKNVPNWHRDLVRVCG----NIPIVLCGNKVDIKDRK-VKAKQITFHRKKNLQ-YYEISAKSNYNFEKPFL  152 (166)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCC----CCcEEEEEEchhccccc-CCHHHHHHHHHcCCE-EEEEeCCCCCChHHHHH
Confidence            9999999999999999999987754    79999999999997433 333344566665555 999999999 9999999


Q ss_pred             HHHHHHhC
Q 006490          583 RIIWAAEH  590 (643)
Q Consensus       583 ~l~~~~~~  590 (643)
                      +|++.+.+
T Consensus       153 ~l~~~~~~  160 (166)
T cd00877         153 WLARKLLG  160 (166)
T ss_pred             HHHHHHHh
Confidence            99988753

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04142 RRP22 RRP22 subfamily

Probab=99.92  E-value=1.3e-23  Score=200.87  Aligned_cols=168  Identities=19%  Similarity=0.225  Sum_probs=130.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhh------hccHHhhcc
Q 006490          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKI------LSNKEALAS  497 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~------~~~~~~~~~  497 (643)
                      +||+|+|++|||||||+++++++++...+.||++.+.....+...|....+.+||++|.+.+...      .....+++.
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~   80 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN   80 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence            48999999999999999999999998888888876655555666655567789999986433211      013355789


Q ss_pred             CCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHH-HhCCCCcEEeeeccC
Q 006490          498 CDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQ-ELGIEPPIPVSMKSK  575 (643)
Q Consensus       498 ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~-~~~~~~~~~vSa~~g  575 (643)
                      ||++++|||++++.||+.+..|+..+.+.......++|+++|+||+|+...+.. .+....++. ..+++ +++|||++|
T Consensus        81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~e~Sak~g  159 (198)
T cd04142          81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCG-YLECSAKYN  159 (198)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCc-EEEecCCCC
Confidence            999999999999999999999998887654211117999999999999664433 445555654 44665 999999999


Q ss_pred             -CHHHHHHHHHHHHhCCC
Q 006490          576 -DLNNVFSRIIWAAEHPH  592 (643)
Q Consensus       576 -~i~~l~~~l~~~~~~~~  592 (643)
                       |++++|+.+++.+..+.
T Consensus       160 ~~v~~lf~~i~~~~~~~~  177 (198)
T cd04142         160 WHILLLFKELLISATTRG  177 (198)
T ss_pred             CCHHHHHHHHHHHhhccC
Confidence             99999999999886444

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=4.4e-24  Score=180.32  Aligned_cols=161  Identities=22%  Similarity=0.308  Sum_probs=143.7

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i  501 (643)
                      --+||+++|..|||||.|++++..+-|++....|++.++.++++.+.|...++.||||+|++++.++  +..+++.|+++
T Consensus         6 flfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsi--tqsyyrsahal   83 (213)
T KOG0095|consen    6 FLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSI--TQSYYRSAHAL   83 (213)
T ss_pred             eeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHH--HHHHhhhcceE
Confidence            4589999999999999999999999998877789999999999999999999999999999999999  89999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHH
Q 006490          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNN  579 (643)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~  579 (643)
                      ++|||++-..||+-+.+|+.++.++...   +.--|+|+||+|+.+.+++ .+..+++.+....- ++++||+.. |++.
T Consensus        84 ilvydiscqpsfdclpewlreie~yan~---kvlkilvgnk~d~~drrevp~qigeefs~~qdmy-fletsakea~nve~  159 (213)
T KOG0095|consen   84 ILVYDISCQPSFDCLPEWLREIEQYANN---KVLKILVGNKIDLADRREVPQQIGEEFSEAQDMY-FLETSAKEADNVEK  159 (213)
T ss_pred             EEEEecccCcchhhhHHHHHHHHHHhhc---ceEEEeeccccchhhhhhhhHHHHHHHHHhhhhh-hhhhcccchhhHHH
Confidence            9999999999999999999999988653   4456899999999887666 55667777775554 899999999 9999


Q ss_pred             HHHHHHHHH
Q 006490          580 VFSRIIWAA  588 (643)
Q Consensus       580 l~~~l~~~~  588 (643)
                      +|..++..+
T Consensus       160 lf~~~a~rl  168 (213)
T KOG0095|consen  160 LFLDLACRL  168 (213)
T ss_pred             HHHHHHHHH
Confidence            999987754

>cd04112 Rab26 Rab26 subfamily

Probab=99.91  E-value=1.9e-23  Score=199.34  Aligned_cols=163  Identities=21%  Similarity=0.407  Sum_probs=137.3

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEE
Q 006490          424 FRCLLFGPQNAGKSALLNSFLERPFSE-NYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~~~~~-~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~il  502 (643)
                      +||+|+|++|||||||++++.+..+.. .+.+|++.++....+...+....+.+||++|++.+..+  ...+++.+|+++
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~ad~~i   78 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSV--THAYYRDAHALL   78 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHh--hHHHccCCCEEE
Confidence            489999999999999999999998764 45567776676666777766678889999999888776  677889999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHHH
Q 006490          503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNNV  580 (643)
Q Consensus       503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l  580 (643)
                      +|+|++++.+|+.+..|+..+......   ++|+++|+||+|+...+.. .++...+++.++++ ++++||++| |++++
T Consensus        79 ~v~D~~~~~s~~~~~~~~~~i~~~~~~---~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~-~~e~Sa~~~~~v~~l  154 (191)
T cd04112          79 LLYDITNKASFDNIRAWLTEIKEYAQE---DVVIMLLGNKADMSGERVVKREDGERLAKEYGVP-FMETSAKTGLNVELA  154 (191)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCCC---CCcEEEEEEcccchhccccCHHHHHHHHHHcCCe-EEEEeCCCCCCHHHH
Confidence            999999999999999999988876532   6899999999999754333 56777888888875 999999999 99999


Q ss_pred             HHHHHHHHhCCC
Q 006490          581 FSRIIWAAEHPH  592 (643)
Q Consensus       581 ~~~l~~~~~~~~  592 (643)
                      |++|.+.+....
T Consensus       155 ~~~l~~~~~~~~  166 (191)
T cd04112         155 FTAVAKELKHRK  166 (191)
T ss_pred             HHHHHHHHHHhc
Confidence            999999876443

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.91  E-value=4.9e-24  Score=200.53  Aligned_cols=162  Identities=25%  Similarity=0.391  Sum_probs=129.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe-eeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECC
Q 006490           15 VVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACN   93 (643)
Q Consensus        15 I~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~   93 (643)
                      |+|+|++|||||||+++++++.+...+.++.... .....++...+.+.+|||||++.+....+.+++.+|++|+|||++
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~   80 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD   80 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence            6899999999999999999998876644433222 223344555678999999999999888889999999999999999


Q ss_pred             CcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCcc----------chhhhhhhHHHHhhcccceEEEeCcccCCC
Q 006490           94 QQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA----------TSLEEVMGPIMQQFREIETCVECSATTMIQ  163 (643)
Q Consensus        94 ~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  163 (643)
                      ++.+++.+...|.+.+....+++|+++|+||+|+......          ....+....+++.++. ..+++|||++|.|
T Consensus        81 ~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~e~Sa~~~~~  159 (174)
T smart00174       81 SPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGA-VKYLECSALTQEG  159 (174)
T ss_pred             CHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCC-cEEEEecCCCCCC
Confidence            9999999976799999887789999999999998753210          0123345567777763 3699999999999


Q ss_pred             hhHHHHHHHHHHhC
Q 006490          164 VPDVFYYAQKAVLH  177 (643)
Q Consensus       164 i~~l~~~i~~~~~~  177 (643)
                      |+++|+.+++.++.
T Consensus       160 v~~lf~~l~~~~~~  173 (174)
T smart00174      160 VREVFEEAIRAALN  173 (174)
T ss_pred             HHHHHHHHHHHhcC
Confidence            99999999987653

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.91  E-value=1.2e-23  Score=197.42  Aligned_cols=157  Identities=21%  Similarity=0.353  Sum_probs=131.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill  503 (643)
                      +||+++|.+|||||||+.+++++.+...+.||....+. ..+...+....+.+|||+|++.+..+  +..+++++|++|+
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~d~~il   78 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQEDYDRL--RPLSYPQTDVFLI   78 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeE-EEEEECCEEEEEEEEECCCchhhhhh--hhhhcCCCCEEEE
Confidence            68999999999999999999999998888888765443 34456656677889999999988877  6778899999999


Q ss_pred             EEeCCChhhHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcc-------------ccHHHHHHHHHHhCCCCcEE
Q 006490          504 VYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-------------MAVQDSARVTQELGIEPPIP  569 (643)
Q Consensus       504 v~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~-------------~~~~~~~~~~~~~~~~~~~~  569 (643)
                      |||++++.||+.+. .|+..+.....    +.|+++|+||+|+.+.+             ...++...+++.++..++++
T Consensus        79 v~d~~~~~sf~~~~~~~~~~~~~~~~----~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e  154 (174)
T cd01871          79 CFSLVSPASFENVRAKWYPEVRHHCP----NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE  154 (174)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhCC----CCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEE
Confidence            99999999999986 58887766533    79999999999996432             22667788899998656999


Q ss_pred             eeeccC-CHHHHHHHHHHH
Q 006490          570 VSMKSK-DLNNVFSRIIWA  587 (643)
Q Consensus       570 vSa~~g-~i~~l~~~l~~~  587 (643)
                      |||++| |++++|+.+++.
T Consensus       155 ~Sa~~~~~i~~~f~~l~~~  173 (174)
T cd01871         155 CSALTQKGLKTVFDEAIRA  173 (174)
T ss_pred             ecccccCCHHHHHHHHHHh
Confidence            999999 999999998864

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04140 ARHI_like ARHI subfamily

Probab=99.91  E-value=8.3e-24  Score=197.06  Aligned_cols=157  Identities=23%  Similarity=0.270  Sum_probs=124.1

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-CeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEE
Q 006490           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (643)
Q Consensus        12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~   90 (643)
                      ++||+++|++|||||||+++++++.+...+.++.+ .+..........+.+.+|||+|++.+......+++.+|++|+||
T Consensus         1 ~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (165)
T cd04140           1 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   80 (165)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence            37999999999999999999999988666433333 33333344556788999999999999888889999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHHhc----CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhH
Q 006490           91 ACNQQSTLSRLSSYWLPELRRL----EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (643)
Q Consensus        91 d~~~~~s~~~~~~~~~~~l~~~----~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  166 (643)
                      |++++.+++.+.. |+..++..    .+++|+++|+||+|+...+.. .. +....+...++  ..+++|||++|.|+++
T Consensus        81 d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v-~~-~~~~~~~~~~~--~~~~e~SA~~g~~v~~  155 (165)
T cd04140          81 SVTSKQSLEELKP-IYELICEIKGNNIEKIPIMLVGNKCDESHKREV-SS-NEGAACATEWN--CAFMETSAKTNHNVQE  155 (165)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHHhcCCCCCCCEEEEEECccccccCee-cH-HHHHHHHHHhC--CcEEEeecCCCCCHHH
Confidence            9999999999884 77777653    257999999999999764443 22 23344555554  3689999999999999


Q ss_pred             HHHHHHH
Q 006490          167 VFYYAQK  173 (643)
Q Consensus       167 l~~~i~~  173 (643)
                      +|+++..
T Consensus       156 ~f~~l~~  162 (165)
T cd04140         156 LFQELLN  162 (165)
T ss_pred             HHHHHHh
Confidence            9999875

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04124 RabL2 RabL2 subfamily

Probab=99.91  E-value=1.9e-23  Score=193.81  Aligned_cols=158  Identities=18%  Similarity=0.275  Sum_probs=131.0

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill  503 (643)
                      +||+++|.+|||||||+++++++.+...+.++...+.....+...+....+.+||++|++.+..+  +..+++++|++++
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d~~i~   78 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTM--HASYYHKAHACIL   78 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhh--hHHHhCCCCEEEE
Confidence            58999999999999999999999887777666655555555566655667789999999998887  7788999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC-CHHHHHH
Q 006490          504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNVFS  582 (643)
Q Consensus       504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l~~  582 (643)
                      |||++++.+++.+..|+..+.+...    +.|+++|+||+|+...  .......+++..+++ ++++||++| |++++|+
T Consensus        79 v~d~~~~~s~~~~~~~~~~i~~~~~----~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~-~~~~Sa~~~~gv~~l~~  151 (161)
T cd04124          79 VFDVTRKITYKNLSKWYEELREYRP----EIPCIVVANKIDLDPS--VTQKKFNFAEKHNLP-LYYVSAADGTNVVKLFQ  151 (161)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCC----CCcEEEEEECccCchh--HHHHHHHHHHHcCCe-EEEEeCCCCCCHHHHHH
Confidence            9999999999999999999876543    7899999999998542  233445666667765 999999999 9999999


Q ss_pred             HHHHHHhC
Q 006490          583 RIIWAAEH  590 (643)
Q Consensus       583 ~l~~~~~~  590 (643)
                      .+++.+..
T Consensus       152 ~l~~~~~~  159 (161)
T cd04124         152 DAIKLAVS  159 (161)
T ss_pred             HHHHHHHh
Confidence            99987753

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd04176 Rap2 Rap2 subgroup

Probab=99.91  E-value=1.5e-23  Score=194.99  Aligned_cols=159  Identities=22%  Similarity=0.350  Sum_probs=132.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill  503 (643)
                      +||+++|.+|||||||+++++++.+...+.+|... +....+..+|....+.+||++|++.+..+  +..+++++|++++
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~ad~~i~   78 (163)
T cd04176           2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIED-FYRKEIEVDSSPSVLEILDTAGTEQFASM--RDLYIKNGQGFIV   78 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhh-eEEEEEEECCEEEEEEEEECCCcccccch--HHHHHhhCCEEEE
Confidence            69999999999999999999999988877777653 44556666765667789999999988887  7778899999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHHHH
Q 006490          504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNNVF  581 (643)
Q Consensus       504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l~  581 (643)
                      |||++++.+|+++..|+..+.+.....  ++|+++|+||+|+...... ......+++.++.+ ++++||++| |++++|
T Consensus        79 v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~l~  155 (163)
T cd04176          79 VYSLVNQQTFQDIKPMRDQIVRVKGYE--KVPIILVGNKVDLESEREVSSAEGRALAEEWGCP-FMETSAKSKTMVNELF  155 (163)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEECccchhcCccCHHHHHHHHHHhCCE-EEEecCCCCCCHHHHH
Confidence            999999999999999998887754323  7999999999998654333 44567777777774 999999999 999999


Q ss_pred             HHHHHHH
Q 006490          582 SRIIWAA  588 (643)
Q Consensus       582 ~~l~~~~  588 (643)
                      .++.+.+
T Consensus       156 ~~l~~~l  162 (163)
T cd04176         156 AEIVRQM  162 (163)
T ss_pred             HHHHHhc
Confidence            9998653

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04126 Rab20 Rab20 subfamily

Probab=99.91  E-value=1.1e-23  Score=203.29  Aligned_cols=159  Identities=25%  Similarity=0.287  Sum_probs=124.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEEC
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYAC   92 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~   92 (643)
                      +||+|+|++|||||||+++|+.+.|....+++.....   ......+.+.||||+|++.+......+++.+|++|+|||+
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~~~Tig~~~~---~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dv   77 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFY---LKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDV   77 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCCCCCccceEEE---EEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEEC
Confidence            5899999999999999999999988654333222111   1123567899999999999999999999999999999999


Q ss_pred             CCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCC-------------------CCccchhhhhhhHHHHhhccc---
Q 006490           93 NQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRG-------------------DHNATSLEEVMGPIMQQFREI---  150 (643)
Q Consensus        93 ~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~-------------------~~~~~~~~~~~~~~~~~~~~~---  150 (643)
                      +++.+++.+...|....+....+.|+|||+||+|+..                   .+.+  ..+....++++++..   
T Consensus        78 t~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v--~~~e~~~~a~~~~~~~~~  155 (220)
T cd04126          78 SNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQV--TLEDAKAFYKRINKYKML  155 (220)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccC--CHHHHHHHHHHhCccccc
Confidence            9999999998644444443445799999999999875                   2222  334566777776532   


Q ss_pred             ---------ceEEEeCcccCCChhHHHHHHHHHHh
Q 006490          151 ---------ETCVECSATTMIQVPDVFYYAQKAVL  176 (643)
Q Consensus       151 ---------~~~~~~Sa~~~~gi~~l~~~i~~~~~  176 (643)
                               .+|++|||++|.||+++|+.+++.+.
T Consensus       156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~  190 (220)
T cd04126         156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVL  190 (220)
T ss_pred             cccccccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence                     36999999999999999999998764

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04134 Rho3 Rho3 subfamily

Probab=99.91  E-value=1.5e-23  Score=199.70  Aligned_cols=161  Identities=21%  Similarity=0.299  Sum_probs=133.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEEE
Q 006490          425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV  504 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv  504 (643)
                      ||+|+|++|||||||+++|.++.+...+.||....+. ..+..++....+.+||++|++.+..+  +..+++.+|++++|
T Consensus         2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l--~~~~~~~a~~~ilv   78 (189)
T cd04134           2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRL--RSLSYADTDVIMLC   78 (189)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhcccc--ccccccCCCEEEEE
Confidence            7999999999999999999999998888888776554 34555656678889999999988777  66788999999999


Q ss_pred             EeCCChhhHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccc-------------cHHHHHHHHHHhCCCCcEEe
Q 006490          505 YDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-------------AVQDSARVTQELGIEPPIPV  570 (643)
Q Consensus       505 ~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~-------------~~~~~~~~~~~~~~~~~~~v  570 (643)
                      ||++++.||+.+. .|+..+.....    +.|+++|+||+|+.....             ..++...+++..+..++++|
T Consensus        79 ~dv~~~~sf~~~~~~~~~~i~~~~~----~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~  154 (189)
T cd04134          79 FSVDSPDSLENVESKWLGEIREHCP----GVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLEC  154 (189)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhCC----CCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEc
Confidence            9999999999886 58888876543    799999999999976432             13445677777775459999


Q ss_pred             eeccC-CHHHHHHHHHHHHhCCC
Q 006490          571 SMKSK-DLNNVFSRIIWAAEHPH  592 (643)
Q Consensus       571 Sa~~g-~i~~l~~~l~~~~~~~~  592 (643)
                      ||++| |++++|++|++.+..+.
T Consensus       155 SAk~~~~v~e~f~~l~~~~~~~~  177 (189)
T cd04134         155 SAKLNRGVNEAFTEAARVALNVR  177 (189)
T ss_pred             cCCcCCCHHHHHHHHHHHHhccc
Confidence            99999 99999999999887554

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.91  E-value=2.1e-23  Score=193.74  Aligned_cols=157  Identities=17%  Similarity=0.333  Sum_probs=134.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcC--CCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQP--GGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~--g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i  501 (643)
                      +||+++|++|||||||++++.++.+...+.+|.+.++....+...  +...++.+||++|++.+..+  +..+++.+|++
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--~~~~~~~~~~~   78 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAI--TKAYYRGAQAC   78 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHh--HHHHhcCCCEE
Confidence            489999999999999999999998887777887776655555555  56678889999999988887  67889999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHH
Q 006490          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNN  579 (643)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~  579 (643)
                      ++|||++++.+|+.+..|+..+.....    ++|+++|+||+|+..+... .++...+++.++++ ++++||++| |+++
T Consensus        79 v~v~d~~~~~s~~~l~~~~~~~~~~~~----~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~  153 (162)
T cd04106          79 ILVFSTTDRESFEAIESWKEKVEAECG----DIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLP-LFRTSVKDDFNVTE  153 (162)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhCC----CCCEEEEEEChhcccccCCCHHHHHHHHHHcCCe-EEEEECCCCCCHHH
Confidence            999999999999999999988876543    7999999999999765443 56778888888885 999999999 9999


Q ss_pred             HHHHHHHH
Q 006490          580 VFSRIIWA  587 (643)
Q Consensus       580 l~~~l~~~  587 (643)
                      +|++|.+.
T Consensus       154 l~~~l~~~  161 (162)
T cd04106         154 LFEYLAEK  161 (162)
T ss_pred             HHHHHHHh
Confidence            99998753

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>PTZ00369 Ras-like protein; Provisional

Probab=99.91  E-value=1.9e-23  Score=199.09  Aligned_cols=161  Identities=19%  Similarity=0.333  Sum_probs=136.3

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEE
Q 006490          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~il  502 (643)
                      .+||+|+|.+|||||||++++.++.+...+.||++..+ ...+.+++....+.+|||+|++.+..+  +..+++.+|+++
T Consensus         5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l--~~~~~~~~d~ii   81 (189)
T PTZ00369          5 EYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAM--RDQYMRTGQGFL   81 (189)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhh--HHHHhhcCCEEE
Confidence            58999999999999999999999998888878877655 344556666677889999999998887  678899999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHHH
Q 006490          503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNNV  580 (643)
Q Consensus       503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l  580 (643)
                      +|||++++.+|+.+..|+..+.+.....  +.|+++|+||+|+...... ......+++.++++ ++++||++| |++++
T Consensus        82 lv~D~s~~~s~~~~~~~~~~i~~~~~~~--~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~-~~e~Sak~~~gi~~~  158 (189)
T PTZ00369         82 CVYSITSRSSFEEIASFREQILRVKDKD--RVPMILVGNKCDLDSERQVSTGEGQELAKSFGIP-FLETSAKQRVNVDEA  158 (189)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEECcccccccccCHHHHHHHHHHhCCE-EEEeeCCCCCCHHHH
Confidence            9999999999999999999887764433  7899999999998654333 45667777788875 999999999 99999


Q ss_pred             HHHHHHHHh
Q 006490          581 FSRIIWAAE  589 (643)
Q Consensus       581 ~~~l~~~~~  589 (643)
                      |++|++.+.
T Consensus       159 ~~~l~~~l~  167 (189)
T PTZ00369        159 FYELVREIR  167 (189)
T ss_pred             HHHHHHHHH
Confidence            999998775

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.91  E-value=2e-23  Score=194.25  Aligned_cols=160  Identities=20%  Similarity=0.401  Sum_probs=133.5

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill  503 (643)
                      +||+|+|++|||||||++++++..+...+.+|+++.+ ...+..++....+.+||++|++.+..+  ...+++.+|++++
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~--~~~~~~~~~~~i~   77 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSY-RKQIEIDGEVCLLDILDTAGQEEFSAM--RDQYMRTGEGFLL   77 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhE-EEEEEECCEEEEEEEEECCCcccchHH--HHHHHhhCCEEEE
Confidence            4899999999999999999999998888878777544 344555655667889999999988877  6778899999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHHHH
Q 006490          504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNNVF  581 (643)
Q Consensus       504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l~  581 (643)
                      |||++++.+|+.+..|...+.+.....  +.|+++|+||+|+...+.. .+....+++..+.+ ++++||++| |++++|
T Consensus        78 v~d~~~~~s~~~~~~~~~~i~~~~~~~--~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~l~  154 (164)
T smart00173       78 VYSITDRQSFEEIKKFREQILRVKDRD--DVPIVLVGNKCDLESERVVSTEEGKELARQWGCP-FLETSAKERVNVDEAF  154 (164)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEECccccccceEcHHHHHHHHHHcCCE-EEEeecCCCCCHHHHH
Confidence            999999999999999988877654433  7899999999999764433 55677788888865 999999999 999999


Q ss_pred             HHHHHHHh
Q 006490          582 SRIIWAAE  589 (643)
Q Consensus       582 ~~l~~~~~  589 (643)
                      ++|++.+.
T Consensus       155 ~~l~~~~~  162 (164)
T smart00173      155 YDLVREIR  162 (164)
T ss_pred             HHHHHHHh
Confidence            99998764

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04125 RabA_like RabA-like subfamily

Probab=99.91  E-value=2.5e-23  Score=198.17  Aligned_cols=160  Identities=23%  Similarity=0.328  Sum_probs=137.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill  503 (643)
                      +||+++|++|||||||+++|.++.+...+.+|.+.++....+...|....+.+||++|++.+..+  +...++++|++++
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~--~~~~~~~~d~iil   78 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSL--NNSYYRGAHGYLL   78 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhh--HHHHccCCCEEEE
Confidence            48999999999999999999999988777788877777777777766667889999999888776  7788999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHHHH
Q 006490          504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNNVF  581 (643)
Q Consensus       504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l~  581 (643)
                      |||++++.+|..+..|+..+......   +.|+++|+||+|+.+.... .+....+++..+++ ++++||++| |++++|
T Consensus        79 v~d~~~~~s~~~i~~~~~~i~~~~~~---~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~evSa~~~~~i~~~f  154 (188)
T cd04125          79 VYDVTDQESFENLKFWINEINRYARE---NVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIP-FFETSAKQSINVEEAF  154 (188)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhCCC---CCeEEEEEECCCCcccccCCHHHHHHHHHHcCCe-EEEEeCCCCCCHHHHH
Confidence            99999999999999999998876432   6899999999999865443 55667788888885 999999999 999999


Q ss_pred             HHHHHHHh
Q 006490          582 SRIIWAAE  589 (643)
Q Consensus       582 ~~l~~~~~  589 (643)
                      ++|.+.+.
T Consensus       155 ~~l~~~~~  162 (188)
T cd04125         155 ILLVKLII  162 (188)
T ss_pred             HHHHHHHH
Confidence            99999875

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04144 Ras2 Ras2 subfamily

Probab=99.91  E-value=1.5e-23  Score=199.97  Aligned_cols=161  Identities=21%  Similarity=0.341  Sum_probs=133.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEEE
Q 006490          425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV  504 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv  504 (643)
                      ||+|+|.+|||||||+++|+++.+...+.||+++.+. ..+...|....+.+||++|++.+..+  +..+++.+|++++|
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~ad~~ilv   77 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYR-KQVVVDGQPCMLEVLDTAGQEEYTAL--RDQWIREGEGFILV   77 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEE-EEEEECCEEEEEEEEECCCchhhHHH--HHHHHHhCCEEEEE
Confidence            5899999999999999999999988888788776553 34456655567889999999988887  67889999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHHHHH
Q 006490          505 YDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNNVFS  582 (643)
Q Consensus       505 ~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l~~  582 (643)
                      ||++++.||+.+..|+..+.........+.|+++|+||+|+...+.. ......+++.+++. ++++||++| |++++|+
T Consensus        78 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~SAk~~~~v~~l~~  156 (190)
T cd04144          78 YSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCE-FIEASAKTNVNVERAFY  156 (190)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCE-EEEecCCCCCCHHHHHH
Confidence            99999999999999998887654321127899999999999754433 45567788888875 999999999 9999999


Q ss_pred             HHHHHHh
Q 006490          583 RIIWAAE  589 (643)
Q Consensus       583 ~l~~~~~  589 (643)
                      ++++.+.
T Consensus       157 ~l~~~l~  163 (190)
T cd04144         157 TLVRALR  163 (190)
T ss_pred             HHHHHHH
Confidence            9998764

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.91  E-value=2.9e-23  Score=193.17  Aligned_cols=160  Identities=19%  Similarity=0.379  Sum_probs=133.3

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEE
Q 006490          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~il  502 (643)
                      .+||+++|++|||||||++++++..+...+.+|++..+ .....+.|....+.+||++|++.+..+  ...+++.+|+++
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~~~~i   78 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWAILDILDTAGQEEFSAM--REQYMRTGEGFL   78 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEECCEEEEEEEEECCCCcchhHH--HHHHHhhCCEEE
Confidence            37999999999999999999999988777777777544 344556655567889999999988887  678899999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHHH
Q 006490          503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNNV  580 (643)
Q Consensus       503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l  580 (643)
                      +|||++++.+|+.+..|+..+.+.....  +.|+++|+||+|+...+.. .+....+++..+++ ++++||++| |++++
T Consensus        79 lv~d~~~~~s~~~~~~~~~~~~~~~~~~--~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~l  155 (164)
T cd04145          79 LVFSVTDRGSFEEVDKFHTQILRVKDRD--EFPMILVGNKADLEHQRKVSREEGQELARKLKIP-YIETSAKDRLNVDKA  155 (164)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCCC--CCCEEEEeeCccccccceecHHHHHHHHHHcCCc-EEEeeCCCCCCHHHH
Confidence            9999999999999999998887654333  7899999999999765433 45677788888875 999999999 99999


Q ss_pred             HHHHHHHH
Q 006490          581 FSRIIWAA  588 (643)
Q Consensus       581 ~~~l~~~~  588 (643)
                      |+.|++.+
T Consensus       156 ~~~l~~~~  163 (164)
T cd04145         156 FHDLVRVI  163 (164)
T ss_pred             HHHHHHhh
Confidence            99998764

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=99.91  E-value=1.3e-23  Score=202.17  Aligned_cols=162  Identities=18%  Similarity=0.233  Sum_probs=130.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCccc-CCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFY-PDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v   89 (643)
                      +||+|+|++|||||||+++|+++.+...+.++.+...  ....+. ...+.+.+|||||++.+...+..+++++|++|+|
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv   80 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV   80 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence            5899999999999999999999988766555444222  223344 5578899999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHhc-----CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCCh
Q 006490           90 YACNQQSTLSRLSSYWLPELRRL-----EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQV  164 (643)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~~-----~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  164 (643)
                      ||++++.+++.+. .|...+...     ..++|++||+||+|+......  ..+.+..+++..+ ...++++||++|.||
T Consensus        81 ~D~t~~~s~~~~~-~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~--~~~~~~~~~~~~~-~~~~~e~Sak~~~~v  156 (201)
T cd04107          81 FDVTRPSTFEAVL-KWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAK--DGEQMDQFCKENG-FIGWFETSAKEGINI  156 (201)
T ss_pred             EECCCHHHHHHHH-HHHHHHHHhhcccCCCCCcEEEEEECCCccccccc--CHHHHHHHHHHcC-CceEEEEeCCCCCCH
Confidence            9999999999997 588877642     257899999999999754333  3345677777765 236999999999999


Q ss_pred             hHHHHHHHHHHhCC
Q 006490          165 PDVFYYAQKAVLHP  178 (643)
Q Consensus       165 ~~l~~~i~~~~~~~  178 (643)
                      +++|+++.+.+...
T Consensus       157 ~e~f~~l~~~l~~~  170 (201)
T cd04107         157 EEAMRFLVKNILAN  170 (201)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999887643

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01865 Rab3 Rab3 subfamily

Probab=99.91  E-value=1.2e-23  Score=195.89  Aligned_cols=159  Identities=18%  Similarity=0.244  Sum_probs=127.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEE
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~   90 (643)
                      +||+++|++|||||||+++|++..+...+.++.+...  .........+.+.+|||+|.+.+...+..+++.+|++++||
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~   81 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence            7999999999999999999999998766544443221  12223345688999999999988888899999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHHH
Q 006490           91 ACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY  169 (643)
Q Consensus        91 d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  169 (643)
                      |++++.+++.+. .|.+.+.... .+.|+++|+||+|+...... . .+....+.+.++  .+++++||++|.|++++|+
T Consensus        82 d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~-~-~~~~~~~~~~~~--~~~~~~Sa~~~~gv~~l~~  156 (165)
T cd01865          82 DITNEESFNAVQ-DWSTQIKTYSWDNAQVILVGNKCDMEDERVV-S-SERGRQLADQLG--FEFFEASAKENINVKQVFE  156 (165)
T ss_pred             ECCCHHHHHHHH-HHHHHHHHhCCCCCCEEEEEECcccCccccc-C-HHHHHHHHHHcC--CEEEEEECCCCCCHHHHHH
Confidence            999999999987 5999987654 47899999999999765543 2 334455666655  2699999999999999999


Q ss_pred             HHHHHHh
Q 006490          170 YAQKAVL  176 (643)
Q Consensus       170 ~i~~~~~  176 (643)
                      ++.+.+.
T Consensus       157 ~l~~~~~  163 (165)
T cd01865         157 RLVDIIC  163 (165)
T ss_pred             HHHHHHH
Confidence            9987643

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04113 Rab4 Rab4 subfamily

Probab=99.91  E-value=2.5e-23  Score=193.04  Aligned_cols=158  Identities=21%  Similarity=0.382  Sum_probs=135.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill  503 (643)
                      +||+|+|++|||||||+++|++.++...+.++.+..+....+.+++....+.+||++|++.+..+  +...++.+|++++
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~--~~~~~~~~~~~i~   78 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSV--TRSYYRGAAGALL   78 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHh--HHHHhcCCCEEEE
Confidence            58999999999999999999999988877777777676677777766677889999999888776  6788899999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHHHH
Q 006490          504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNNVF  581 (643)
Q Consensus       504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l~  581 (643)
                      |||++++.+|+.+..|+..+......   +.|+++|+||+|+...... .+....+++..++. ++++||+++ |++++|
T Consensus        79 v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~~~  154 (161)
T cd04113          79 VYDITNRTSFEALPTWLSDARALASP---NIVVILVGNKSDLADQREVTFLEASRFAQENGLL-FLETSALTGENVEEAF  154 (161)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCCC---CCeEEEEEEchhcchhccCCHHHHHHHHHHcCCE-EEEEECCCCCCHHHHH
Confidence            99999999999999999888665432   7999999999999764433 66778888888866 999999999 999999


Q ss_pred             HHHHHH
Q 006490          582 SRIIWA  587 (643)
Q Consensus       582 ~~l~~~  587 (643)
                      +++++.
T Consensus       155 ~~~~~~  160 (161)
T cd04113         155 LKCARS  160 (161)
T ss_pred             HHHHHh
Confidence            999875

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.91  E-value=1.1e-23  Score=194.16  Aligned_cols=153  Identities=16%  Similarity=0.206  Sum_probs=120.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEEC
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYAC   92 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~   92 (643)
                      +||+++|++|||||||+++++.+.|...++++.+.......+++..+.+.+|||+|++.     ..+++.+|++++|||+
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d~   75 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFSL   75 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEEC
Confidence            58999999999999999999998887765554444433344555567899999999864     3567889999999999


Q ss_pred             CCcccHHHHHHHHHHHHHhcC--CCCcEEEEEecccCCC--CCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHH
Q 006490           93 NQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRG--DHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (643)
Q Consensus        93 ~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  168 (643)
                      +++.+++.+.. |++.+....  ++.|+++|+||+|+..  .+.+  ..+..+.++++.+. ..+++|||++|.||+++|
T Consensus        76 ~~~~sf~~~~~-~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v--~~~~~~~~~~~~~~-~~~~e~SAk~~~~i~~~f  151 (158)
T cd04103          76 ENEASFQTVYN-LYHQLSSYRNISEIPLILVGTQDAISESNPRVI--DDARARQLCADMKR-CSYYETCATYGLNVERVF  151 (158)
T ss_pred             CCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEeeHHHhhhcCCccc--CHHHHHHHHHHhCC-CcEEEEecCCCCCHHHHH
Confidence            99999999985 888887654  5789999999999853  2333  33344566666543 369999999999999999


Q ss_pred             HHHHHH
Q 006490          169 YYAQKA  174 (643)
Q Consensus       169 ~~i~~~  174 (643)
                      +.+.+.
T Consensus       152 ~~~~~~  157 (158)
T cd04103         152 QEAAQK  157 (158)
T ss_pred             HHHHhh
Confidence            988754

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=99.91  E-value=1.5e-23  Score=195.75  Aligned_cols=160  Identities=17%  Similarity=0.284  Sum_probs=130.0

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (643)
Q Consensus        12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v   89 (643)
                      .+||+++|++|||||||++++++..+...+.++.+...  ....+....+.+.+|||||++.+......+++.+|++|+|
T Consensus         3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v   82 (167)
T cd01867           3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILV   82 (167)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEE
Confidence            48999999999999999999999998777555444332  2234445567899999999998888888999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHH
Q 006490           90 YACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (643)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  168 (643)
                      ||++++.+++.+.. |++.+.... .+.|+++|+||+|+......  ..+....+...++  .+++++||++|.|++++|
T Consensus        83 ~d~~~~~s~~~~~~-~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~~~  157 (167)
T cd01867          83 YDITDEKSFENIRN-WMRNIEEHASEDVERMLVGNKCDMEEKRVV--SKEEGEALADEYG--IKFLETSAKANINVEEAF  157 (167)
T ss_pred             EECcCHHHHHhHHH-HHHHHHHhCCCCCcEEEEEECcccccccCC--CHHHHHHHHHHcC--CEEEEEeCCCCCCHHHHH
Confidence            99999999999884 999887653 47899999999999865443  2233455666654  369999999999999999


Q ss_pred             HHHHHHHh
Q 006490          169 YYAQKAVL  176 (643)
Q Consensus       169 ~~i~~~~~  176 (643)
                      +++.+.+.
T Consensus       158 ~~i~~~~~  165 (167)
T cd01867         158 FTLAKDIK  165 (167)
T ss_pred             HHHHHHHH
Confidence            99998764

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>PF08356 EF_assoc_2: EF hand associated; InterPro: IPR013567 This region predominantly appears near EF-hands (IPR002048 from INTERPRO) in GTP-binding proteins

Probab=99.91  E-value=9.8e-25  Score=172.22  Aligned_cols=88  Identities=65%  Similarity=1.075  Sum_probs=84.8

Q ss_pred             CCCCCHHHHHHHHHHHHhhccCCcCCCCcChhhHHHHHHHHHHcCCccchhHHHhhccCCCCccccCCCC-CCCCCCCCC
Q 006490          227 NAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFL-PVPTKLSPD  305 (643)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~w~~l~~~~~~~~~~~~~~~~-p~~~~~~~~  305 (643)
                      +.+++..+++++++++++..|.++...|||++||++|+++|+++||+|++|+|||+|||+|+|.|.++++ | .++++|+
T Consensus         1 n~pL~~~el~~ik~~v~~~~~~gv~~~GiT~~GFl~L~~lfierGR~ETtW~vLR~FgY~d~L~L~d~~l~p-~l~v~~~   79 (89)
T PF08356_consen    1 NKPLQPQELEDIKKVVRENIPDGVNDNGITLDGFLFLNKLFIERGRHETTWTVLRKFGYDDDLSLSDDFLYP-KLDVPPD   79 (89)
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCcCCCccchhhHHHHHHHHHHhCcchHHHHHHHHcCCCCcceeccccCCC-CccCCCC
Confidence            4689999999999999999999999999999999999999999999999999999999999999999999 6 8999999


Q ss_pred             CceecchhHH
Q 006490          306 QSVELASEAV  315 (643)
Q Consensus       306 ~~~~ls~~~~  315 (643)
                      +++|||+.|+
T Consensus        80 ~svELS~~gy   89 (89)
T PF08356_consen   80 QSVELSPEGY   89 (89)
T ss_pred             CeeecCcCcC
Confidence            9999999873

It is found in all three eukaryotic kingdoms.

>cd04140 ARHI_like ARHI subfamily

Probab=99.91  E-value=3.2e-23  Score=193.08  Aligned_cols=160  Identities=19%  Similarity=0.324  Sum_probs=129.6

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill  503 (643)
                      +||+++|++|||||||+++++++.+...+.||....+ ...+...+....+.+||++|++.+..+  +..+++.+|++++
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~~~~il   78 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAM--QRLSISKGHAFIL   78 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHH--HHHHhhcCCEEEE
Confidence            6899999999999999999999998877777766544 333444545667889999999988876  6678899999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHHHH
Q 006490          504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNNVF  581 (643)
Q Consensus       504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l~  581 (643)
                      |||++++.+|+.+..|+..+.+.......+.|+++|+||+|+...+.. .+....++...++. +++|||++| |++++|
T Consensus        79 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~SA~~g~~v~~~f  157 (165)
T cd04140          79 VYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCA-FMETSAKTNHNVQELF  157 (165)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCc-EEEeecCCCCCHHHHH
Confidence            999999999999999988776653321127999999999999764333 45566777777775 999999999 999999


Q ss_pred             HHHHHH
Q 006490          582 SRIIWA  587 (643)
Q Consensus       582 ~~l~~~  587 (643)
                      ++|+..
T Consensus       158 ~~l~~~  163 (165)
T cd04140         158 QELLNL  163 (165)
T ss_pred             HHHHhc
Confidence            999754

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04144 Ras2 Ras2 subfamily

Probab=99.91  E-value=1e-23  Score=201.12  Aligned_cols=160  Identities=23%  Similarity=0.357  Sum_probs=128.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe-eeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEEC
Q 006490           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYAC   92 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~   92 (643)
                      ||+++|++|||||||+++|+.+.|...++++.+.. .....+++..+.+.+|||||++++...+..+++.+|++|+|||+
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~   80 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI   80 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence            69999999999999999999988877655544432 23334445567799999999999999999999999999999999


Q ss_pred             CCcccHHHHHHHHHHHHHhc----CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHH
Q 006490           93 NQQSTLSRLSSYWLPELRRL----EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (643)
Q Consensus        93 ~~~~s~~~~~~~~~~~l~~~----~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  168 (643)
                      +++.+++.+.. |...+...    ..+.|+++|+||+|+.....+ .. .....+...++  .+++++||++|.|++++|
T Consensus        81 ~~~~s~~~~~~-~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v-~~-~~~~~~~~~~~--~~~~e~SAk~~~~v~~l~  155 (190)
T cd04144          81 TSRSTFERVER-FREQIQRVKDESAADVPIMIVGNKCDKVYEREV-ST-EEGAALARRLG--CEFIEASAKTNVNVERAF  155 (190)
T ss_pred             CCHHHHHHHHH-HHHHHHHHhcccCCCCCEEEEEEChhccccCcc-CH-HHHHHHHHHhC--CEEEEecCCCCCCHHHHH
Confidence            99999999884 88777553    247899999999999765444 32 33456666665  369999999999999999


Q ss_pred             HHHHHHHhCC
Q 006490          169 YYAQKAVLHP  178 (643)
Q Consensus       169 ~~i~~~~~~~  178 (643)
                      +++.+.+...
T Consensus       156 ~~l~~~l~~~  165 (190)
T cd04144         156 YTLVRALRQQ  165 (190)
T ss_pred             HHHHHHHHHh
Confidence            9999877533

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04117 Rab15 Rab15 subfamily

Probab=99.91  E-value=1.4e-23  Score=194.65  Aligned_cols=157  Identities=17%  Similarity=0.262  Sum_probs=127.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEE
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~   90 (643)
                      +||+++|++|||||||+++++++.|.+.+.++.+...  ....+....+.+.+|||+|++.+......+++.+|++++||
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY   80 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence            5899999999999999999999988766444443322  23344445678999999999998888889999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHHH
Q 006490           91 ACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY  169 (643)
Q Consensus        91 d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  169 (643)
                      |++++.+++.+. .|++.+.... .+.|+++|+||+|+...+.+ . .+....+++.++  .++++|||++|.||+++|+
T Consensus        81 d~~~~~sf~~~~-~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v-~-~~~~~~~~~~~~--~~~~e~Sa~~~~~v~~~f~  155 (161)
T cd04117          81 DISSERSYQHIM-KWVSDVDEYAPEGVQKILIGNKADEEQKRQV-G-DEQGNKLAKEYG--MDFFETSACTNSNIKESFT  155 (161)
T ss_pred             ECCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECcccccccCC-C-HHHHHHHHHHcC--CEEEEEeCCCCCCHHHHHH
Confidence            999999999998 5999887654 37899999999999766554 2 344566666665  4799999999999999999


Q ss_pred             HHHHH
Q 006490          170 YAQKA  174 (643)
Q Consensus       170 ~i~~~  174 (643)
                      ++.+.
T Consensus       156 ~l~~~  160 (161)
T cd04117         156 RLTEL  160 (161)
T ss_pred             HHHhh
Confidence            98764

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>PTZ00369 Ras-like protein; Provisional

Probab=99.91  E-value=1.5e-23  Score=199.78  Aligned_cols=163  Identities=21%  Similarity=0.334  Sum_probs=131.1

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-eeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEE
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (643)
                      ...+||+|+|++|||||||++++.++.+...+.++.+. ......++...+.+.+|||||++++..++..+++.+|++|+
T Consensus         3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil   82 (189)
T PTZ00369          3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC   82 (189)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence            34689999999999999999999999887665444333 22334556667889999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhH
Q 006490           89 TYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (643)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  166 (643)
                      |||++++.+++.+.. |...+.+.  ..+.|+++|+||+|+.....+ . .+....+.+.++  .+++++||++|.||.+
T Consensus        83 v~D~s~~~s~~~~~~-~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i-~-~~~~~~~~~~~~--~~~~e~Sak~~~gi~~  157 (189)
T PTZ00369         83 VYSITSRSSFEEIAS-FREQILRVKDKDRVPMILVGNKCDLDSERQV-S-TGEGQELAKSFG--IPFLETSAKQRVNVDE  157 (189)
T ss_pred             EEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccccccccc-C-HHHHHHHHHHhC--CEEEEeeCCCCCCHHH
Confidence            999999999999984 88877654  247899999999998755443 2 233455556554  3699999999999999


Q ss_pred             HHHHHHHHHhC
Q 006490          167 VFYYAQKAVLH  177 (643)
Q Consensus       167 l~~~i~~~~~~  177 (643)
                      +|.++.+.+..
T Consensus       158 ~~~~l~~~l~~  168 (189)
T PTZ00369        158 AFYELVREIRK  168 (189)
T ss_pred             HHHHHHHHHHH
Confidence            99999987753

>cd04176 Rap2 Rap2 subgroup

Probab=99.91  E-value=1.7e-23  Score=194.52  Aligned_cols=159  Identities=23%  Similarity=0.307  Sum_probs=126.4

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe-eeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEE
Q 006490           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (643)
Q Consensus        12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~   90 (643)
                      ++||+++|++|||||||+++++.+.+...+.++.... .....+++..+.+.||||||++.+...+..+++++|++++||
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~   80 (163)
T cd04176           1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence            4799999999999999999999998877655543322 233344455677899999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHH
Q 006490           91 ACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (643)
Q Consensus        91 d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  168 (643)
                      |++++.+++++.. |...+.+.  ..++|+++|+||+|+...... .. .....+...++  .+++++||++|.|++++|
T Consensus        81 d~~~~~s~~~~~~-~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~-~~-~~~~~~~~~~~--~~~~~~Sa~~~~~v~~l~  155 (163)
T cd04176          81 SLVNQQTFQDIKP-MRDQIVRVKGYEKVPIILVGNKVDLESEREV-SS-AEGRALAEEWG--CPFMETSAKSKTMVNELF  155 (163)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccchhcCcc-CH-HHHHHHHHHhC--CEEEEecCCCCCCHHHHH
Confidence            9999999999974 87777653  258999999999998654433 22 23455555554  368999999999999999


Q ss_pred             HHHHHHH
Q 006490          169 YYAQKAV  175 (643)
Q Consensus       169 ~~i~~~~  175 (643)
                      .++.+.+
T Consensus       156 ~~l~~~l  162 (163)
T cd04176         156 AEIVRQM  162 (163)
T ss_pred             HHHHHhc
Confidence            9987653

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04124 RabL2 RabL2 subfamily

Probab=99.91  E-value=1.9e-23  Score=193.79  Aligned_cols=156  Identities=22%  Similarity=0.274  Sum_probs=125.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEE
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~   90 (643)
                      +||+++|++|||||||++++++..+.+...++.....  ....++...+.+.+|||+|++.+...+..+++.+|++|+||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence            5899999999999999999999988666444322221  22344556788999999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHHHH
Q 006490           91 ACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYY  170 (643)
Q Consensus        91 d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  170 (643)
                      |++++.+++.+. .|+..+++..+++|+++|+||+|+...     ..+....+.+..+  .+++++||++|.|++++|+.
T Consensus        81 d~~~~~s~~~~~-~~~~~i~~~~~~~p~ivv~nK~Dl~~~-----~~~~~~~~~~~~~--~~~~~~Sa~~~~gv~~l~~~  152 (161)
T cd04124          81 DVTRKITYKNLS-KWYEELREYRPEIPCIVVANKIDLDPS-----VTQKKFNFAEKHN--LPLYYVSAADGTNVVKLFQD  152 (161)
T ss_pred             ECCCHHHHHHHH-HHHHHHHHhCCCCcEEEEEECccCchh-----HHHHHHHHHHHcC--CeEEEEeCCCCCCHHHHHHH
Confidence            999999999987 599999877778999999999998532     1122334444443  36899999999999999999


Q ss_pred             HHHHHh
Q 006490          171 AQKAVL  176 (643)
Q Consensus       171 i~~~~~  176 (643)
                      +.+.+.
T Consensus       153 l~~~~~  158 (161)
T cd04124         153 AIKLAV  158 (161)
T ss_pred             HHHHHH
Confidence            988765

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd04148 RGK RGK subfamily

Probab=99.91  E-value=4.9e-23  Score=200.55  Aligned_cols=190  Identities=18%  Similarity=0.301  Sum_probs=143.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhc-cCCEE
Q 006490          424 FRCLLFGPQNAGKSALLNSFLERPFS-ENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALA-SCDVT  501 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~~~~-~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~-~ad~i  501 (643)
                      +||+++|++|||||||+++|+++.+. ..+.++...++....+.+.+....+.+||++|++.  .+  ...++. .+|++
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~--~~~~~~~~ad~i   76 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WT--EDSCMQYQGDAF   76 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HH--HhHHhhcCCCEE
Confidence            48999999999999999999988876 56666665456666677776667788999999972  22  234556 99999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHH
Q 006490          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNN  579 (643)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~  579 (643)
                      ++|||++++.+|+.+..|+..+.......  ++|+++|+||+|+...... .++...++...++. ++++||++| |+++
T Consensus        77 ilV~d~td~~S~~~~~~~~~~l~~~~~~~--~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~-~~e~SA~~~~gv~~  153 (221)
T cd04148          77 VVVYSVTDRSSFERASELRIQLRRNRQLE--DRPIILVGNKSDLARSREVSVQEGRACAVVFDCK-FIETSAGLQHNVDE  153 (221)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEEChhccccceecHHHHHHHHHHcCCe-EEEecCCCCCCHHH
Confidence            99999999999999999998887754322  7999999999999765443 45567788888875 999999999 9999


Q ss_pred             HHHHHHHHHhCCCCCCCCcc---cccchhhhhhhhchhhHHHHH
Q 006490          580 VFSRIIWAAEHPHLNIPETE---TGRNRKRYRHLVNSSLVFVSV  620 (643)
Q Consensus       580 l~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~  620 (643)
                      +|+.+++.+...........   ......|+..++.++...++.
T Consensus       154 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~a~~~l~~  197 (221)
T cd04148         154 LLEGIVRQIRLRRDSKEKNERRSRRAYRGRRESLTSKAKRFLGK  197 (221)
T ss_pred             HHHHHHHHHHhhhccccccCccccccccCccchHHHHHHHHHHH
Confidence            99999998864333322222   123344555556666655544

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.91  E-value=2e-23  Score=194.92  Aligned_cols=159  Identities=22%  Similarity=0.268  Sum_probs=128.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEE
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~   90 (643)
                      +||+++|++|||||||+++|+++.+...+.++.+...  ....+....+.+.+|||+|.+.+......+++.+|++|+||
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY   80 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence            5899999999999999999999998766555443322  23344566788999999999988888889999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHHhcC------CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCCh
Q 006490           91 ACNQQSTLSRLSSYWLPELRRLE------IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQV  164 (643)
Q Consensus        91 d~~~~~s~~~~~~~~~~~l~~~~------~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  164 (643)
                      |++++.+++.+. .|...+.+..      .+.|+++|+||+|+......  ..+....+....+  .+++++||++|.|+
T Consensus        81 D~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi  155 (168)
T cd04119          81 DVTDRQSFEALD-SWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAV--SEDEGRLWAESKG--FKYFETSACTGEGV  155 (168)
T ss_pred             ECCCHHHHHhHH-HHHHHHHHhccccccCCCceEEEEEEchhccccccc--CHHHHHHHHHHcC--CeEEEEECCCCCCH
Confidence            999999999987 5988887653      36899999999999753332  2334455666655  36999999999999


Q ss_pred             hHHHHHHHHHHh
Q 006490          165 PDVFYYAQKAVL  176 (643)
Q Consensus       165 ~~l~~~i~~~~~  176 (643)
                      +++|+++.+.++
T Consensus       156 ~~l~~~l~~~l~  167 (168)
T cd04119         156 NEMFQTLFSSIV  167 (168)
T ss_pred             HHHHHHHHHHHh
Confidence            999999988764

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=99.91  E-value=2.2e-23  Score=194.49  Aligned_cols=160  Identities=18%  Similarity=0.283  Sum_probs=128.8

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (643)
Q Consensus        12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v   89 (643)
                      .+||+++|++|||||||+++++++.+...+.++.+...  ....+....+.+.+|||||++.+......+++.+|++|+|
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v   81 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   81 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence            37999999999999999999999887665444333222  2233445567899999999998888888999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHH
Q 006490           90 YACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (643)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  168 (643)
                      ||++++.+++.+.. |+..+.... ++.|+++|+||+|+...... . .+....+++.++  .+++++||++|.|++++|
T Consensus        82 ~d~~~~~s~~~l~~-~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~-~-~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~~~  156 (166)
T cd01869          82 YDVTDQESFNNVKQ-WLQEIDRYASENVNKLLVGNKCDLTDKRVV-D-YSEAQEFADELG--IPFLETSAKNATNVEQAF  156 (166)
T ss_pred             EECcCHHHHHhHHH-HHHHHHHhCCCCCcEEEEEEChhcccccCC-C-HHHHHHHHHHcC--CeEEEEECCCCcCHHHHH
Confidence            99999999999985 999887764 57899999999998765443 2 234456666654  379999999999999999


Q ss_pred             HHHHHHHh
Q 006490          169 YYAQKAVL  176 (643)
Q Consensus       169 ~~i~~~~~  176 (643)
                      ..+.+.+.
T Consensus       157 ~~i~~~~~  164 (166)
T cd01869         157 MTMAREIK  164 (166)
T ss_pred             HHHHHHHH
Confidence            99988653

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>PLN03110 Rab GTPase; Provisional

Probab=99.91  E-value=4.8e-23  Score=200.13  Aligned_cols=162  Identities=19%  Similarity=0.331  Sum_probs=141.0

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i  501 (643)
                      ..+||+++|++|||||||+++|++..+...+.+|.+.++....+..+|....+.+||++|++.+..+  ...+++.+|++
T Consensus        11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~--~~~~~~~~~~~   88 (216)
T PLN03110         11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAI--TSAYYRGAVGA   88 (216)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHH--HHHHhCCCCEE
Confidence            5689999999999999999999999988777788888887777888766678889999999998887  77889999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHH
Q 006490          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNN  579 (643)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~  579 (643)
                      |+|||++++.+|+.+..|+..+......   +.|+++|+||+|+...+.. .+....++..++++ ++++||++| |+++
T Consensus        89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~---~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~-~~e~SA~~g~~v~~  164 (216)
T PLN03110         89 LLVYDITKRQTFDNVQRWLRELRDHADS---NIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLS-FLETSALEATNVEK  164 (216)
T ss_pred             EEEEECCChHHHHHHHHHHHHHHHhCCC---CCeEEEEEEChhcccccCCCHHHHHHHHHHcCCE-EEEEeCCCCCCHHH
Confidence            9999999999999999999988776432   7999999999999765444 56777888888876 999999999 9999


Q ss_pred             HHHHHHHHHh
Q 006490          580 VFSRIIWAAE  589 (643)
Q Consensus       580 l~~~l~~~~~  589 (643)
                      +|+.+++.+.
T Consensus       165 lf~~l~~~i~  174 (216)
T PLN03110        165 AFQTILLEIY  174 (216)
T ss_pred             HHHHHHHHHH
Confidence            9999988764

>cd04128 Spg1 Spg1p

Probab=99.91  E-value=2e-23  Score=197.01  Aligned_cols=160  Identities=19%  Similarity=0.284  Sum_probs=127.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEE
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~   90 (643)
                      +||+++|++|||||||+++|+++.|..++.++.+...  ....+.+..+.+.+|||+|++.+...++.+++++|++++||
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~   80 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF   80 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence            5899999999999999999999998777655554332  23444555688999999999999989999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHHhcCC-CCcEEEEEecccCCCCC----ccchhhhhhhHHHHhhcccceEEEeCcccCCChh
Q 006490           91 ACNQQSTLSRLSSYWLPELRRLEI-KVPIIVAGCKLDLRGDH----NATSLEEVMGPIMQQFREIETCVECSATTMIQVP  165 (643)
Q Consensus        91 d~~~~~s~~~~~~~~~~~l~~~~~-~~pvilv~NK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  165 (643)
                      |++++.+++++. .|+..+++..+ ..| |+|+||+|+....    .. ...+..+.+++.++  .++++|||++|.|++
T Consensus        81 D~t~~~s~~~i~-~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~-~~~~~~~~~a~~~~--~~~~e~SAk~g~~v~  155 (182)
T cd04128          81 DLTRKSTLNSIK-EWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQE-EITKQARKYAKAMK--APLIFCSTSHSINVQ  155 (182)
T ss_pred             ECcCHHHHHHHH-HHHHHHHHhCCCCCE-EEEEEchhccccccchhhh-hhHHHHHHHHHHcC--CEEEEEeCCCCCCHH
Confidence            999999999997 59998877543 455 7899999985321    11 12234456666666  369999999999999


Q ss_pred             HHHHHHHHHHhC
Q 006490          166 DVFYYAQKAVLH  177 (643)
Q Consensus       166 ~l~~~i~~~~~~  177 (643)
                      ++|+++.+.+..
T Consensus       156 ~lf~~l~~~l~~  167 (182)
T cd04128         156 KIFKIVLAKAFD  167 (182)
T ss_pred             HHHHHHHHHHHh
Confidence            999999987753

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04127 Rab27A Rab27a subfamily

Probab=99.91  E-value=1.9e-23  Score=197.72  Aligned_cols=161  Identities=17%  Similarity=0.240  Sum_probs=129.6

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCccc----------CCceeEEEEeCCCCCcchhhhHH
Q 006490           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFY----------PDRVPVTIIDTSSSLENKGKLNE   78 (643)
Q Consensus        11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~----------~~~~~~~i~Dt~G~~~~~~~~~~   78 (643)
                      ..+||+++|++|||||||++++.+..+...+.++.+...  ....+.          ...+.+.+|||||++.+...+..
T Consensus         3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~   82 (180)
T cd04127           3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA   82 (180)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence            348999999999999999999999988766544443221  111111          34578999999999998888999


Q ss_pred             hhccCCEEEEEEECCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEe
Q 006490           79 ELKRADAVVLTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVEC  156 (643)
Q Consensus        79 ~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (643)
                      +++.+|++|+|||++++.++..+. .|+..+...  .++.|+++|+||+|+...+.+ . .+....+++.++  .+++++
T Consensus        83 ~~~~~~~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v-~-~~~~~~~~~~~~--~~~~e~  157 (180)
T cd04127          83 FFRDAMGFLLIFDLTNEQSFLNVR-NWMSQLQTHAYCENPDIVLCGNKADLEDQRQV-S-EEQAKALADKYG--IPYFET  157 (180)
T ss_pred             HhCCCCEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCcEEEEEeCccchhcCcc-C-HHHHHHHHHHcC--CeEEEE
Confidence            999999999999999999999998 499888664  357899999999999765544 2 344577777776  379999


Q ss_pred             CcccCCChhHHHHHHHHHHh
Q 006490          157 SATTMIQVPDVFYYAQKAVL  176 (643)
Q Consensus       157 Sa~~~~gi~~l~~~i~~~~~  176 (643)
                      ||++|.|++++|+++.+.+.
T Consensus       158 Sak~~~~v~~l~~~l~~~~~  177 (180)
T cd04127         158 SAATGTNVEKAVERLLDLVM  177 (180)
T ss_pred             eCCCCCCHHHHHHHHHHHHH
Confidence            99999999999999987654

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.91  E-value=2.9e-23  Score=193.13  Aligned_cols=159  Identities=18%  Similarity=0.297  Sum_probs=127.2

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe-eeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEE
Q 006490           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (643)
Q Consensus        12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~   90 (643)
                      .+||+++|++|||||||++++++..+...++++.+.. .....+.+..+.+.+|||||++++...+..+++.+|++++||
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   81 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVF   81 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEE
Confidence            5799999999999999999999988776655544432 233345555678999999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHH
Q 006490           91 ACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (643)
Q Consensus        91 d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  168 (643)
                      |++++.+++.+.. |...+.+.  ..+.|+++|+||+|+...... . .+....+++.++  .+++++||++|.|++++|
T Consensus        82 d~~~~~s~~~~~~-~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~-~-~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~l~  156 (164)
T cd04145          82 SVTDRGSFEEVDK-FHTQILRVKDRDEFPMILVGNKADLEHQRKV-S-REEGQELARKLK--IPYIETSAKDRLNVDKAF  156 (164)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHHhCCCCCCEEEEeeCcccccccee-c-HHHHHHHHHHcC--CcEEEeeCCCCCCHHHHH
Confidence            9999999999875 77777543  357899999999999765443 2 233455666655  269999999999999999


Q ss_pred             HHHHHHH
Q 006490          169 YYAQKAV  175 (643)
Q Consensus       169 ~~i~~~~  175 (643)
                      +.+.+.+
T Consensus       157 ~~l~~~~  163 (164)
T cd04145         157 HDLVRVI  163 (164)
T ss_pred             HHHHHhh
Confidence            9987653

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.91  E-value=3e-23  Score=192.50  Aligned_cols=158  Identities=20%  Similarity=0.333  Sum_probs=125.2

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe-eeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEE
Q 006490           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (643)
Q Consensus        12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~   90 (643)
                      .+||+++|++|||||||+|+|+++.+...+.++.+.. .....++...+.+.+|||+|++++..++..+++.+|++++||
T Consensus         1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~   80 (162)
T cd04138           1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF   80 (162)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence            3799999999999999999999998877655544432 233344555677899999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHH
Q 006490           91 ACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (643)
Q Consensus        91 d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  168 (643)
                      |++++.+++.+.. |...+.+.  ..++|+++|+||+|+... ..  .......+.+.++  .+++++||++|.|++++|
T Consensus        81 ~~~~~~s~~~~~~-~~~~i~~~~~~~~~piivv~nK~Dl~~~-~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~  154 (162)
T cd04138          81 AINSRKSFEDIHT-YREQIKRVKDSDDVPMVLVGNKCDLAAR-TV--SSRQGQDLAKSYG--IPYIETSAKTRQGVEEAF  154 (162)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccc-ee--cHHHHHHHHHHhC--CeEEEecCCCCCCHHHHH
Confidence            9999999999874 77766553  247899999999998753 22  2333455555555  369999999999999999


Q ss_pred             HHHHHHH
Q 006490          169 YYAQKAV  175 (643)
Q Consensus       169 ~~i~~~~  175 (643)
                      +++.+.+
T Consensus       155 ~~l~~~~  161 (162)
T cd04138         155 YTLVREI  161 (162)
T ss_pred             HHHHHHh
Confidence            9988653

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.91  E-value=2.6e-23  Score=197.90  Aligned_cols=157  Identities=28%  Similarity=0.399  Sum_probs=121.8

Q ss_pred             ccEEEEEcCCCCCHHHHHH-HHhcCCC-----CCCCCCCCC---CeeeC--------CcccCCceeEEEEeCCCCCcchh
Q 006490           12 GVRVVVVGDRGTGKSSLIA-AAATESV-----PEKVPPVHA---PTRLP--------PDFYPDRVPVTIIDTSSSLENKG   74 (643)
Q Consensus        12 ~~kI~lvG~~~vGKSsL~n-~l~~~~~-----~~~~~~~~~---~~~~~--------~~~~~~~~~~~i~Dt~G~~~~~~   74 (643)
                      .+||+++|++|||||||+. ++.++.+     ...+.++.+   .....        ..+++..+.+.||||+|++.  .
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence            4799999999999999996 6665433     333333332   11111        13456678999999999875  2


Q ss_pred             hhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCC-------------------Cccch
Q 006490           75 KLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD-------------------HNATS  135 (643)
Q Consensus        75 ~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~-------------------~~~~~  135 (643)
                      ....+++++|++|+|||++++.+++.+...|.+.++..+++.|++||+||+|+...                   +.+  
T Consensus        80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V--  157 (195)
T cd01873          80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADIL--  157 (195)
T ss_pred             hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCcc--
Confidence            45578999999999999999999999976699999877778999999999998642                   222  


Q ss_pred             hhhhhhHHHHhhcccceEEEeCcccCCChhHHHHHHHHH
Q 006490          136 LEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKA  174 (643)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~  174 (643)
                      ..+..+.++++++.  +|++|||++|.||+++|+.+++.
T Consensus       158 ~~~e~~~~a~~~~~--~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         158 PPETGRAVAKELGI--PYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             CHHHHHHHHHHhCC--EEEEcCCCCCCCHHHHHHHHHHh
Confidence            34556788888873  79999999999999999988764

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.91  E-value=3.1e-23  Score=193.05  Aligned_cols=159  Identities=20%  Similarity=0.330  Sum_probs=127.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-eeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEE
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA   91 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d   91 (643)
                      +||+|+|++|||||||+++|++..+...+.++.+. ......+....+.+.+|||||++++...+..+++.+|++++|||
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d   80 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence            58999999999999999999998887765544432 22334455566889999999999998999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHHH
Q 006490           92 CNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY  169 (643)
Q Consensus        92 ~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  169 (643)
                      ++++.+++.+.. |...+.+.  ..++|+++|+||+|+......  ..+....+.+.++  .+++++||++|.|++++|+
T Consensus        81 ~~~~~s~~~~~~-~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~l~~  155 (164)
T smart00173       81 ITDRQSFEEIKK-FREQILRVKDRDDVPIVLVGNKCDLESERVV--STEEGKELARQWG--CPFLETSAKERVNVDEAFY  155 (164)
T ss_pred             CCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccccccceE--cHHHHHHHHHHcC--CEEEEeecCCCCCHHHHHH
Confidence            999999999874 77666443  247899999999999765433  2334455666655  4799999999999999999


Q ss_pred             HHHHHHh
Q 006490          170 YAQKAVL  176 (643)
Q Consensus       170 ~i~~~~~  176 (643)
                      ++.+.+.
T Consensus       156 ~l~~~~~  162 (164)
T smart00173      156 DLVREIR  162 (164)
T ss_pred             HHHHHHh
Confidence            9987653

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.91  E-value=2.6e-23  Score=193.68  Aligned_cols=158  Identities=18%  Similarity=0.279  Sum_probs=125.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEE
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~   90 (643)
                      +||+++|++|||||||+++++.+.+...+.++.+...  .........+.+.+|||+|++.+......+++.+|++|+||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF   80 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence            5899999999999999999998887665554443322  22233455688999999999988888889999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHHHH
Q 006490           91 ACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYY  170 (643)
Q Consensus        91 d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  170 (643)
                      |++++.+++.+. .|...+.+.+.++|+++|+||+|+.... . . .+ ...+.+..  ...++++||++|.|++++|++
T Consensus        81 d~~~~~s~~~~~-~~~~~i~~~~~~~piiiv~nK~Dl~~~~-~-~-~~-~~~~~~~~--~~~~~e~Sa~~~~~v~~~f~~  153 (166)
T cd00877          81 DVTSRVTYKNVP-NWHRDLVRVCGNIPIVLCGNKVDIKDRK-V-K-AK-QITFHRKK--NLQYYEISAKSNYNFEKPFLW  153 (166)
T ss_pred             ECCCHHHHHHHH-HHHHHHHHhCCCCcEEEEEEchhccccc-C-C-HH-HHHHHHHc--CCEEEEEeCCCCCChHHHHHH
Confidence            999999999997 5999998876689999999999997322 2 1 12 23333332  236999999999999999999


Q ss_pred             HHHHHhC
Q 006490          171 AQKAVLH  177 (643)
Q Consensus       171 i~~~~~~  177 (643)
                      +.+.+..
T Consensus       154 l~~~~~~  160 (166)
T cd00877         154 LARKLLG  160 (166)
T ss_pred             HHHHHHh
Confidence            9988753

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.91  E-value=7.7e-23  Score=191.50  Aligned_cols=161  Identities=19%  Similarity=0.329  Sum_probs=136.8

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhh-hhhccHHhhccCCEE
Q 006490          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK-KILSNKEALASCDVT  501 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~-~~~~~~~~~~~ad~i  501 (643)
                      .+||+++|++|||||||++++++..+...+.+|.+.++....+.+++....+.+||++|++.+. .+  ...+++++|++
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~~d~~   79 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSM--VQHYYRNVHAV   79 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhh--HHHhhcCCCEE
Confidence            4799999999999999999999998887777777777777777788667788899999998775 34  56778999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeecc---C-C
Q 006490          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKS---K-D  576 (643)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~---g-~  576 (643)
                      ++|||++++.+|+.+..|+..+.......  ++|+++|+||+|+...... .+....+++..++. ++++||++   + |
T Consensus        80 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~e~Sa~~~~~~~~  156 (170)
T cd04115          80 VFVYDVTNMASFHSLPSWIEECEQHSLPN--EVPRILVGNKCDLREQIQVPTDLAQRFADAHSMP-LFETSAKDPSENDH  156 (170)
T ss_pred             EEEEECCCHHHHHhHHHHHHHHHHhcCCC--CCCEEEEEECccchhhcCCCHHHHHHHHHHcCCc-EEEEeccCCcCCCC
Confidence            99999999999999999999888765433  7999999999999765544 56777888888876 99999999   7 8


Q ss_pred             HHHHHHHHHHHH
Q 006490          577 LNNVFSRIIWAA  588 (643)
Q Consensus       577 i~~l~~~l~~~~  588 (643)
                      ++++|..+++.+
T Consensus       157 i~~~f~~l~~~~  168 (170)
T cd04115         157 VEAIFMTLAHKL  168 (170)
T ss_pred             HHHHHHHHHHHh
Confidence            999999998765

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.91  E-value=5e-23  Score=196.04  Aligned_cols=160  Identities=23%  Similarity=0.368  Sum_probs=133.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcC-CCcEEEEEEecCCchhhhhhhccHHhhccCCEEE
Q 006490          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQP-GGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~-g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~il  502 (643)
                      +||+|+|++|||||||+++|+++.+...+.||+...+... +..+ +....+.+|||+|++.+..+  ...++++||+++
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~-i~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~ad~ii   77 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTN-IQGPNGKIIELALWDTAGQEEYDRL--RPLSYPDVDVLL   77 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEE-EEecCCcEEEEEEEECCCchhHHHH--HHHhCCCCCEEE
Confidence            4899999999999999999999998877778777665443 4444 45667889999999988877  667889999999


Q ss_pred             EEEeCCChhhHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcc-----ccHHHHHHHHHHhCCCCcEEeeeccC-
Q 006490          503 FVYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-----MAVQDSARVTQELGIEPPIPVSMKSK-  575 (643)
Q Consensus       503 lv~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~~vSa~~g-  575 (643)
                      +|||++++.||+.+. .|+..+.....    +.|+++|+||+|+....     ...+...+++..++..+++++||++| 
T Consensus        78 ~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~  153 (187)
T cd04132          78 ICYAVDNPTSLDNVEDKWFPEVNHFCP----GTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTME  153 (187)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCC----CCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCC
Confidence            999999999999986 48877765433    78999999999986532     22667888899999855999999999 


Q ss_pred             CHHHHHHHHHHHHhC
Q 006490          576 DLNNVFSRIIWAAEH  590 (643)
Q Consensus       576 ~i~~l~~~l~~~~~~  590 (643)
                      |++++|..+.+.+..
T Consensus       154 ~v~~~f~~l~~~~~~  168 (187)
T cd04132         154 NVEEVFDTAIEEALK  168 (187)
T ss_pred             CHHHHHHHHHHHHHh
Confidence            999999999998753

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.91  E-value=2.9e-23  Score=197.68  Aligned_cols=164  Identities=25%  Similarity=0.368  Sum_probs=130.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe-eeCCccc-CCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEE
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFY-PDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~   90 (643)
                      +||+|+|++|||||||+++|+++.+...+.++.+.. ....... ...+.+.+|||||++.+......+++++|++|+||
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~   80 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY   80 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence            589999999999999999999998876654433222 2222232 45678999999999988888889999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCC---ccchhhhhhhHHHHhhcccceEEEeCcccCCChhHH
Q 006490           91 ACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH---NATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV  167 (643)
Q Consensus        91 d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  167 (643)
                      |++++.+++.+...|...+....+++|+++|+||+|+....   .. ...+..+.++..++. .+++++||++|.||+++
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~-v~~~~~~~~~~~~~~-~~~~e~Sa~~~~~v~~~  158 (187)
T cd04132          81 AVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRK-VTPAQAESVAKKQGA-FAYLECSAKTMENVEEV  158 (187)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCC-cCHHHHHHHHHHcCC-cEEEEccCCCCCCHHHH
Confidence            99999999999767988887766789999999999986542   11 123455666666653 26899999999999999


Q ss_pred             HHHHHHHHhCC
Q 006490          168 FYYAQKAVLHP  178 (643)
Q Consensus       168 ~~~i~~~~~~~  178 (643)
                      |+.+.+.+...
T Consensus       159 f~~l~~~~~~~  169 (187)
T cd04132         159 FDTAIEEALKK  169 (187)
T ss_pred             HHHHHHHHHhh
Confidence            99999887643

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.91  E-value=2.2e-23  Score=193.53  Aligned_cols=157  Identities=17%  Similarity=0.260  Sum_probs=127.0

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCccc--CCceeEEEEeCCCCCcchhhhHHhhccCCEEEE
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFY--PDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (643)
                      +||+++|++|||||||+++++++.+...+.++.+...  ....+.  ...+.+.+|||||++++...+..+++.+|++++
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~   80 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence            5899999999999999999999887666444333222  222233  557889999999999888889999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHH
Q 006490           89 TYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (643)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  168 (643)
                      |||++++.+++.+. .|...+.....++|+++|+||+|+.....+ . .+....+.+.++  .+++++||++|.|++++|
T Consensus        81 v~d~~~~~s~~~l~-~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v-~-~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~l~  155 (162)
T cd04106          81 VFSTTDRESFEAIE-SWKEKVEAECGDIPMVLVQTKIDLLDQAVI-T-NEEAEALAKRLQ--LPLFRTSVKDDFNVTELF  155 (162)
T ss_pred             EEECCCHHHHHHHH-HHHHHHHHhCCCCCEEEEEEChhcccccCC-C-HHHHHHHHHHcC--CeEEEEECCCCCCHHHHH
Confidence            99999999999987 599888877778999999999999765544 2 244556666665  379999999999999999


Q ss_pred             HHHHHH
Q 006490          169 YYAQKA  174 (643)
Q Consensus       169 ~~i~~~  174 (643)
                      +++...
T Consensus       156 ~~l~~~  161 (162)
T cd04106         156 EYLAEK  161 (162)
T ss_pred             HHHHHh
Confidence            988653

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd01863 Rab18 Rab18 subfamily

Probab=99.91  E-value=7.6e-23  Score=189.76  Aligned_cols=159  Identities=19%  Similarity=0.338  Sum_probs=136.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill  503 (643)
                      +||+++|++|||||||+|+|++..+...+.|+.+.++....+...+....+.+||++|++.+..+  ....++.+|++++
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--~~~~~~~~d~~i~   78 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTL--TSSYYRGAQGVIL   78 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhh--hHHHhCCCCEEEE
Confidence            58999999999999999999999887777788777777666666655677889999999888776  6778899999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC-CHHHHHH
Q 006490          504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNVFS  582 (643)
Q Consensus       504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l~~  582 (643)
                      |+|++++.+|+.+..|+..+.......  +.|+++|+||+|+.......+...++++..++. ++++||++| |++++++
T Consensus        79 v~d~~~~~s~~~~~~~~~~i~~~~~~~--~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~~~~  155 (161)
T cd01863          79 VYDVTRRDTFTNLETWLNELETYSTNN--DIVKMLVGNKIDKENREVTREEGLKFARKHNML-FIETSAKTRDGVQQAFE  155 (161)
T ss_pred             EEECCCHHHHHhHHHHHHHHHHhCCCC--CCcEEEEEECCcccccccCHHHHHHHHHHcCCE-EEEEecCCCCCHHHHHH
Confidence            999999999999999999888775544  799999999999985554566778888888876 999999999 9999999


Q ss_pred             HHHHH
Q 006490          583 RIIWA  587 (643)
Q Consensus       583 ~l~~~  587 (643)
                      .+.+.
T Consensus       156 ~~~~~  160 (161)
T cd01863         156 ELVEK  160 (161)
T ss_pred             HHHHh
Confidence            98764

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=1.1e-23  Score=177.78  Aligned_cols=160  Identities=17%  Similarity=0.253  Sum_probs=135.5

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcc--cCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDF--YPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (643)
Q Consensus        12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v   89 (643)
                      .+|+.|+|+..||||||+.++++..|.+.+-.+.+...+...+  ..+.+++++|||+|++.+...+..++++|+++|++
T Consensus        21 mfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiLm  100 (193)
T KOG0093|consen   21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILM  100 (193)
T ss_pred             eeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEEE
Confidence            4699999999999999999999999877654444443311122  23568899999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHH
Q 006490           90 YACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (643)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  168 (643)
                      ||+++.+++..+.. |.-.+..++ .+.|+|||+||||+..++.+  ..+..+.+.+++|.  .++|+||+.+.||.++|
T Consensus       101 yDitNeeSf~svqd-w~tqIktysw~naqvilvgnKCDmd~eRvi--s~e~g~~l~~~LGf--efFEtSaK~NinVk~~F  175 (193)
T KOG0093|consen  101 YDITNEESFNSVQD-WITQIKTYSWDNAQVILVGNKCDMDSERVI--SHERGRQLADQLGF--EFFETSAKENINVKQVF  175 (193)
T ss_pred             EecCCHHHHHHHHH-HHHHheeeeccCceEEEEecccCCccceee--eHHHHHHHHHHhCh--HHhhhcccccccHHHHH
Confidence            99999999999985 999998776 58999999999999887776  45667889999984  69999999999999999


Q ss_pred             HHHHHHHh
Q 006490          169 YYAQKAVL  176 (643)
Q Consensus       169 ~~i~~~~~  176 (643)
                      +.+...+-
T Consensus       176 e~lv~~Ic  183 (193)
T KOG0093|consen  176 ERLVDIIC  183 (193)
T ss_pred             HHHHHHHH
Confidence            98887654

>cd01861 Rab6 Rab6 subfamily

Probab=99.90  E-value=7.7e-23  Score=189.71  Aligned_cols=158  Identities=19%  Similarity=0.348  Sum_probs=135.0

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill  503 (643)
                      +||+++|++|||||||+++|++.++...+.++++.++....+..++....+.+||++|++.+..+  ....++.+|++++
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~--~~~~~~~~~~ii~   78 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSL--IPSYIRDSSVAVV   78 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHH--HHHHhccCCEEEE
Confidence            38999999999999999999999988877788887777777877765667889999999888776  6778899999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccc-cHHHHHHHHHHhCCCCcEEeeeccC-CHHHHH
Q 006490          504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-DLNNVF  581 (643)
Q Consensus       504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l~  581 (643)
                      |||++++.+|+.+..|+..+......   +.|+++|+||+|+..... ..++...+++..+.. ++++||+++ |+++++
T Consensus        79 v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~l~  154 (161)
T cd01861          79 VYDITNRQSFDNTDKWIDDVRDERGN---DVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAM-FIETSAKAGHNVKELF  154 (161)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhCCC---CCEEEEEEEChhccccCccCHHHHHHHHHHhCCE-EEEEeCCCCCCHHHHH
Confidence            99999999999999999988654322   599999999999954333 356677788888866 999999999 999999


Q ss_pred             HHHHHH
Q 006490          582 SRIIWA  587 (643)
Q Consensus       582 ~~l~~~  587 (643)
                      +++.+.
T Consensus       155 ~~i~~~  160 (161)
T cd01861         155 RKIASA  160 (161)
T ss_pred             HHHHHh
Confidence            999864

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd04110 Rab35 Rab35 subfamily

Probab=99.90  E-value=4.6e-23  Score=197.93  Aligned_cols=163  Identities=20%  Similarity=0.236  Sum_probs=132.1

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEE
Q 006490           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (643)
Q Consensus        11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (643)
                      ..+||+|+|++|||||||+++|++..+...+.++.+...  ....+.+..+.+.||||||++.+...+..+++.+|++++
T Consensus         5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iil   84 (199)
T cd04110           5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIV   84 (199)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEE
Confidence            358999999999999999999999988665444333222  222334556789999999999888888999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHH
Q 006490           89 TYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (643)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  168 (643)
                      |||++++.+++.+. .|++.+.......|+++|+||+|+......  ..+....+...++  .+++++||++|.||.++|
T Consensus        85 v~D~~~~~s~~~~~-~~~~~i~~~~~~~piivVgNK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~e~Sa~~~~gi~~lf  159 (199)
T cd04110          85 VYDVTNGESFVNVK-RWLQEIEQNCDDVCKVLVGNKNDDPERKVV--ETEDAYKFAGQMG--ISLFETSAKENINVEEMF  159 (199)
T ss_pred             EEECCCHHHHHHHH-HHHHHHHHhCCCCCEEEEEECccccccccc--CHHHHHHHHHHcC--CEEEEEECCCCcCHHHHH
Confidence            99999999999997 599999887778999999999998765443  2344455666655  469999999999999999


Q ss_pred             HHHHHHHhCC
Q 006490          169 YYAQKAVLHP  178 (643)
Q Consensus       169 ~~i~~~~~~~  178 (643)
                      +++.+.++..
T Consensus       160 ~~l~~~~~~~  169 (199)
T cd04110         160 NCITELVLRA  169 (199)
T ss_pred             HHHHHHHHHh
Confidence            9999987643

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=99.90  E-value=3.7e-23  Score=193.33  Aligned_cols=160  Identities=17%  Similarity=0.228  Sum_probs=126.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEE
Q 006490           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA   91 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d   91 (643)
                      ||+++|++|||||||+++++++.|...+.++.+...  ....+.+..+.+.+|||||++++......+++++|++++|||
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   81 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD   81 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence            799999999999999999999998777655443322  223344556789999999999998899999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHHhc-CC-CCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHHH
Q 006490           92 CNQQSTLSRLSSYWLPELRRL-EI-KVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY  169 (643)
Q Consensus        92 ~~~~~s~~~~~~~~~~~l~~~-~~-~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  169 (643)
                      ++++.+++.+. .|++.+.+. .+ +.|+++|+||+|+.........++....+..+++  .+++++||++|.|++++|+
T Consensus        82 ~~~~~s~~~~~-~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~--~~~~e~Sa~~g~~v~~lf~  158 (170)
T cd04108          82 LTDVASLEHTR-QWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQ--AEYWSVSALSGENVREFFF  158 (170)
T ss_pred             CcCHHHHHHHH-HHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcC--CeEEEEECCCCCCHHHHHH
Confidence            99999999997 599887543 33 4679999999998654332123344556666665  3689999999999999999


Q ss_pred             HHHHHHh
Q 006490          170 YAQKAVL  176 (643)
Q Consensus       170 ~i~~~~~  176 (643)
                      .+.+.+.
T Consensus       159 ~l~~~~~  165 (170)
T cd04108         159 RVAALTF  165 (170)
T ss_pred             HHHHHHH
Confidence            9988753

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=99.90  E-value=3.6e-24  Score=196.50  Aligned_cols=168  Identities=27%  Similarity=0.410  Sum_probs=147.0

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCCCCeeeCCccc-CCceeEEEEeCCCCCcchhhhHHhhccCCEEEE
Q 006490           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFY-PDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (643)
Q Consensus        11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (643)
                      ..+|++|||+.+||||+|+..++.+.|... .|++.+.+.....++ +..+.+.+|||+|+++|....+..+.++|++|+
T Consensus         3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~   82 (198)
T KOG0393|consen    3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLL   82 (198)
T ss_pred             eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEEE
Confidence            458999999999999999999999999888 566665666777774 888999999999999999988899999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCC-----------ccchhhhhhhHHHHhhcccceEEEeC
Q 006490           89 TYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH-----------NATSLEEVMGPIMQQFREIETCVECS  157 (643)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~S  157 (643)
                      ||++.++.+++++.++|+++++.++++.|+||||+|.|+..+.           .. ...+....+++++|.. .|+|||
T Consensus        83 cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~-Vt~~~g~~lA~~iga~-~y~EcS  160 (198)
T KOG0393|consen   83 CFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEP-VTYEQGLELAKEIGAV-KYLECS  160 (198)
T ss_pred             EEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCc-ccHHHHHHHHHHhCcc-eeeeeh
Confidence            9999999999999999999999999999999999999998542           11 2345568888888864 799999


Q ss_pred             cccCCChhHHHHHHHHHHhCCCC
Q 006490          158 ATTMIQVPDVFYYAQKAVLHPTA  180 (643)
Q Consensus       158 a~~~~gi~~l~~~i~~~~~~~~~  180 (643)
                      |++..|+.++|+.+++..+.+..
T Consensus       161 a~tq~~v~~vF~~a~~~~l~~~~  183 (198)
T KOG0393|consen  161 ALTQKGVKEVFDEAIRAALRPPQ  183 (198)
T ss_pred             hhhhCCcHHHHHHHHHHHhcccc
Confidence            99999999999999998876543

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.90  E-value=6.3e-23  Score=195.59  Aligned_cols=154  Identities=17%  Similarity=0.268  Sum_probs=132.2

Q ss_pred             EcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEEEEeCC
Q 006490          429 FGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSS  508 (643)
Q Consensus       429 vG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv~D~s  508 (643)
                      +|.+|||||||+++++.+.+...+.||++.++....+.+.+....+.+||++|++.+..+  +..+++.+|++|+|||++
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l--~~~~~~~ad~~ilV~D~t   78 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGL--RDGYYIQGQCAIIMFDVT   78 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhh--hHHHhcCCCEEEEEEECC
Confidence            699999999999999998888777788887777777777767778899999999999888  778999999999999999


Q ss_pred             ChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC-CHHHHHHHHHHH
Q 006490          509 DEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNVFSRIIWA  587 (643)
Q Consensus       509 ~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l~~~l~~~  587 (643)
                      ++.||+.+..|+..+.+...    +.|+++|+||+|+.......+ ...+++..++. +++|||++| |++++|.+|++.
T Consensus        79 ~~~S~~~i~~w~~~i~~~~~----~~piilvgNK~Dl~~~~v~~~-~~~~~~~~~~~-~~e~SAk~~~~v~~~F~~l~~~  152 (200)
T smart00176       79 ARVTYKNVPNWHRDLVRVCE----NIPIVLCGNKVDVKDRKVKAK-SITFHRKKNLQ-YYDISAKSNYNFEKPFLWLARK  152 (200)
T ss_pred             ChHHHHHHHHHHHHHHHhCC----CCCEEEEEECcccccccCCHH-HHHHHHHcCCE-EEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999999987653    799999999999865332233 34677777876 999999999 999999999997


Q ss_pred             HhC
Q 006490          588 AEH  590 (643)
Q Consensus       588 ~~~  590 (643)
                      +..
T Consensus       153 i~~  155 (200)
T smart00176      153 LIG  155 (200)
T ss_pred             HHh
Confidence            753

Ran is involved in the active transport of proteins through nuclear pores.

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.90  E-value=5.6e-23  Score=193.31  Aligned_cols=157  Identities=22%  Similarity=0.353  Sum_probs=131.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEEEE
Q 006490          426 CLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVY  505 (643)
Q Consensus       426 i~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv~  505 (643)
                      |+|+|++|||||||+++++++.+...+.+|....+. ..+..++....+.+||++|++.+..+  +...++++|++++||
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d~~ilv~   77 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYS-ADVEVDGKPVELGLWDTAGQEDYDRL--RPLSYPDTDVFLICF   77 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeee-EEEEECCEEEEEEEEECCCCcccchh--chhhcCCCCEEEEEE
Confidence            589999999999999999999998877777765543 34556655667889999999888776  667889999999999


Q ss_pred             eCCChhhHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcc-------------ccHHHHHHHHHHhCCCCcEEee
Q 006490          506 DSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-------------MAVQDSARVTQELGIEPPIPVS  571 (643)
Q Consensus       506 D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~-------------~~~~~~~~~~~~~~~~~~~~vS  571 (643)
                      |++++.||+.+. .|+..+....+    +.|+++|+||+|+....             ...++...+++.++..++++||
T Consensus        78 d~~~~~s~~~~~~~~~~~i~~~~~----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S  153 (174)
T smart00174       78 SVDSPASFENVKEKWYPEVKHFCP----NTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECS  153 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhCC----CCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEec
Confidence            999999999986 58888877544    79999999999997532             2245677889999975599999


Q ss_pred             eccC-CHHHHHHHHHHHHh
Q 006490          572 MKSK-DLNNVFSRIIWAAE  589 (643)
Q Consensus       572 a~~g-~i~~l~~~l~~~~~  589 (643)
                      |++| |++++|+.+++.+.
T Consensus       154 a~~~~~v~~lf~~l~~~~~  172 (174)
T smart00174      154 ALTQEGVREVFEEAIRAAL  172 (174)
T ss_pred             CCCCCCHHHHHHHHHHHhc
Confidence            9999 99999999998775

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.90  E-value=8.4e-23  Score=189.68  Aligned_cols=159  Identities=25%  Similarity=0.424  Sum_probs=141.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEEE
Q 006490          425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV  504 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv  504 (643)
                      ||+++|+++||||||+++|.+..+...+.+|.+.+.....+...+....+.+||++|++.+..+  ....++++|++++|
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~--~~~~~~~~~~~ii~   78 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSL--RDIFYRNSDAIIIV   78 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHH--HHHHHTTESEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccc--cccccccccccccc
Confidence            7999999999999999999999998888888877777777888777778889999999988877  66788999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHHHHH
Q 006490          505 YDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNNVFS  582 (643)
Q Consensus       505 ~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l~~  582 (643)
                      ||++++.||+.+..|+..+......   +.|+++|+||.|+...+.. .++++++++.++.. ++++||+++ |+.++|.
T Consensus        79 fd~~~~~S~~~~~~~~~~i~~~~~~---~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~-~~e~Sa~~~~~v~~~f~  154 (162)
T PF00071_consen   79 FDVTDEESFENLKKWLEEIQKYKPE---DIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVP-YFEVSAKNGENVKEIFQ  154 (162)
T ss_dssp             EETTBHHHHHTHHHHHHHHHHHSTT---TSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSE-EEEEBTTTTTTHHHHHH
T ss_pred             ccccccccccccccccccccccccc---cccceeeeccccccccccchhhHHHHHHHHhCCE-EEEEECCCCCCHHHHHH
Confidence            9999999999999999999988762   6899999999999874444 67889999999955 999999999 9999999


Q ss_pred             HHHHHHh
Q 006490          583 RIIWAAE  589 (643)
Q Consensus       583 ~l~~~~~  589 (643)
                      .+++.+.
T Consensus       155 ~~i~~i~  161 (162)
T PF00071_consen  155 ELIRKIL  161 (162)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9998764

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd04109 Rab28 Rab28 subfamily

Probab=99.90  E-value=4.1e-23  Score=200.77  Aligned_cols=161  Identities=20%  Similarity=0.215  Sum_probs=129.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccC-CceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYP-DRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v   89 (643)
                      +||+|+|++|||||||+++|++..+...+.++.+...  ....+.. ..+.+.||||+|++.+...+..+++.+|++|+|
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV   80 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV   80 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence            5899999999999999999999988776655444222  2223322 468899999999998888999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHhcC----CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChh
Q 006490           90 YACNQQSTLSRLSSYWLPELRRLE----IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP  165 (643)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~~~----~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  165 (643)
                      ||++++.+++.+. .|...+.+..    .+.|+++|+||+|+...+.+  ..+....+.+.++  .++++|||++|.||+
T Consensus        81 ~D~t~~~s~~~~~-~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v--~~~~~~~~~~~~~--~~~~~iSAktg~gv~  155 (215)
T cd04109          81 YDVTNSQSFENLE-DWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTV--KDDKHARFAQANG--MESCLVSAKTGDRVN  155 (215)
T ss_pred             EECCCHHHHHHHH-HHHHHHHHhccccCCCceEEEEEECccccccccc--CHHHHHHHHHHcC--CEEEEEECCCCCCHH
Confidence            9999999999997 5999887653    24689999999999765544  3344566777665  368999999999999


Q ss_pred             HHHHHHHHHHhCC
Q 006490          166 DVFYYAQKAVLHP  178 (643)
Q Consensus       166 ~l~~~i~~~~~~~  178 (643)
                      ++|+++.+.+...
T Consensus       156 ~lf~~l~~~l~~~  168 (215)
T cd04109         156 LLFQQLAAELLGV  168 (215)
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999887643

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04135 Tc10 TC10 subfamily

Probab=99.90  E-value=4.1e-23  Score=194.21  Aligned_cols=161  Identities=23%  Similarity=0.360  Sum_probs=128.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-CeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEE
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA   91 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d   91 (643)
                      +||+++|++|||||||+++|+++.+...+.++.. .......+....+.+.+|||||.+.+....+.+++.+|++++|||
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~   80 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS   80 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence            5899999999999999999999988766444332 222333444556778999999999888888899999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCc-----------cchhhhhhhHHHHhhcccceEEEeCccc
Q 006490           92 CNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----------ATSLEEVMGPIMQQFREIETCVECSATT  160 (643)
Q Consensus        92 ~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  160 (643)
                      ++++.+++.+...|.+.++...+++|+++|+||+|+.+...           . ...+....+++.++. .++++|||++
T Consensus        81 ~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~-~~~~e~Sa~~  158 (174)
T cd04135          81 VVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKP-VTVEQGQKLAKEIGA-HCYVECSALT  158 (174)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCC-CCHHHHHHHHHHcCC-CEEEEecCCc
Confidence            99999999998779999877677899999999999865321           1 112344566666663 3689999999


Q ss_pred             CCChhHHHHHHHHHH
Q 006490          161 MIQVPDVFYYAQKAV  175 (643)
Q Consensus       161 ~~gi~~l~~~i~~~~  175 (643)
                      |.||+++|+.+++.+
T Consensus       159 ~~gi~~~f~~~~~~~  173 (174)
T cd04135         159 QKGLKTVFDEAILAI  173 (174)
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999998765

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=1e-23  Score=178.16  Aligned_cols=162  Identities=20%  Similarity=0.271  Sum_probs=133.1

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEE
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il   87 (643)
                      .--+||++||+.|||||+|+.+|+.+-|++....+.+...  ..+.+.++.+++.||||+|++++.+.++.+++.||++|
T Consensus         5 kflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahali   84 (213)
T KOG0095|consen    5 KFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALI   84 (213)
T ss_pred             ceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEE
Confidence            3358999999999999999999999888666544444433  44567788999999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHhcCC-CCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhH
Q 006490           88 LTYACNQQSTLSRLSSYWLPELRRLEI-KVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (643)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~l~~~~~-~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  166 (643)
                      +|||+++..+|+-+. .|+.++..+.. +.--||||||+|+.+.+++  ..+..+++++...  .-++++||+.-.||+.
T Consensus        85 lvydiscqpsfdclp-ewlreie~yan~kvlkilvgnk~d~~drrev--p~qigeefs~~qd--myfletsakea~nve~  159 (213)
T KOG0095|consen   85 LVYDISCQPSFDCLP-EWLREIEQYANNKVLKILVGNKIDLADRREV--PQQIGEEFSEAQD--MYFLETSAKEADNVEK  159 (213)
T ss_pred             EEEecccCcchhhhH-HHHHHHHHHhhcceEEEeeccccchhhhhhh--hHHHHHHHHHhhh--hhhhhhcccchhhHHH
Confidence            999999999999998 49999988753 4556899999999876665  4455555655532  2479999999999999


Q ss_pred             HHHHHHHHHh
Q 006490          167 VFYYAQKAVL  176 (643)
Q Consensus       167 l~~~i~~~~~  176 (643)
                      ||..+.-.+.
T Consensus       160 lf~~~a~rli  169 (213)
T KOG0095|consen  160 LFLDLACRLI  169 (213)
T ss_pred             HHHHHHHHHH
Confidence            9998877654

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.90  E-value=4.3e-23  Score=193.86  Aligned_cols=159  Identities=26%  Similarity=0.361  Sum_probs=127.0

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-eeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEE
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA   91 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d   91 (643)
                      +||+++|++|||||||++++.++.|...++++... ......++...+.+.+|||||++.+...+..+++.+|++|+|||
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d   80 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS   80 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence            58999999999999999999998887776554322 22333444556789999999999988888899999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCC-----------ccchhhhhhhHHHHhhcccceEEEeCccc
Q 006490           92 CNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH-----------NATSLEEVMGPIMQQFREIETCVECSATT  160 (643)
Q Consensus        92 ~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  160 (643)
                      ++++.+++.+...|+..++...++.|+++|+||+|+....           .. ...+....+++.++ ...+++|||++
T Consensus        81 ~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-v~~~~~~~~a~~~~-~~~~~e~Sa~~  158 (173)
T cd04130          81 VVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKP-VSQSRAKALAEKIG-ACEYIECSALT  158 (173)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCC-cCHHHHHHHHHHhC-CCeEEEEeCCC
Confidence            9999999998767998888765689999999999986431           11 12334556666665 23699999999


Q ss_pred             CCChhHHHHHHHH
Q 006490          161 MIQVPDVFYYAQK  173 (643)
Q Consensus       161 ~~gi~~l~~~i~~  173 (643)
                      |.||+++|+.++.
T Consensus       159 ~~~v~~lf~~~~~  171 (173)
T cd04130         159 QKNLKEVFDTAIL  171 (173)
T ss_pred             CCCHHHHHHHHHh
Confidence            9999999998764

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd04112 Rab26 Rab26 subfamily

Probab=99.90  E-value=6.5e-23  Score=195.72  Aligned_cols=162  Identities=20%  Similarity=0.297  Sum_probs=129.5

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATESVPE-KVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v   89 (643)
                      +||+|+|++|||||||+++|++..+.. .++++.+...  ....++...+.+.||||||+..+......+++.+|++|+|
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   80 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL   80 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence            589999999999999999999988753 3343333222  2234455668899999999988888888999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHH
Q 006490           90 YACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (643)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  168 (643)
                      ||++++.+++++.. |+..+.... .++|+++|+||+|+...+..  ..+....+...++  .+++++||++|.|++++|
T Consensus        81 ~D~~~~~s~~~~~~-~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~--~~~~~~~l~~~~~--~~~~e~Sa~~~~~v~~l~  155 (191)
T cd04112          81 YDITNKASFDNIRA-WLTEIKEYAQEDVVIMLLGNKADMSGERVV--KREDGERLAKEYG--VPFMETSAKTGLNVELAF  155 (191)
T ss_pred             EECCCHHHHHHHHH-HHHHHHHhCCCCCcEEEEEEcccchhcccc--CHHHHHHHHHHcC--CeEEEEeCCCCCCHHHHH
Confidence            99999999999984 998887765 37899999999999754443  2334566666665  379999999999999999


Q ss_pred             HHHHHHHhCCC
Q 006490          169 YYAQKAVLHPT  179 (643)
Q Consensus       169 ~~i~~~~~~~~  179 (643)
                      +++.+.+....
T Consensus       156 ~~l~~~~~~~~  166 (191)
T cd04112         156 TAVAKELKHRK  166 (191)
T ss_pred             HHHHHHHHHhc
Confidence            99999876543

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.90  E-value=1.5e-22  Score=188.45  Aligned_cols=158  Identities=22%  Similarity=0.304  Sum_probs=130.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC--CCCCCCCCCcccceEEEEEEcC-CCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490          424 FRCLLFGPQNAGKSALLNSFLER--PFSENYAPTTGEQYAVNVVDQP-GGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~--~~~~~~~~t~~~~~~~~~v~~~-g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (643)
                      +||+++|++|||||||+++|.+.  .+...+.+|++.++....+... +....+.+||++|++.+..+  ....++++|+
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~d~   78 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDM--VSNYWESPSV   78 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHH--HHHHhCCCCE
Confidence            48999999999999999999864  5667777888776665555554 45678889999999888777  6778899999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHH
Q 006490          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLN  578 (643)
Q Consensus       501 illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~  578 (643)
                      +++|||++++.+|..+..|+..+.....    +.|+++|+||+|+.+.... ......+....+++ ++++||++| |++
T Consensus        79 ii~v~d~~~~~s~~~~~~~~~~~~~~~~----~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~  153 (164)
T cd04101          79 FILVYDVSNKASFENCSRWVNKVRTASK----HMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLK-FFKTSALRGVGYE  153 (164)
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhCC----CCCEEEEEECcccccccCCCHHHHHHHHHHcCCe-EEEEeCCCCCChH
Confidence            9999999999999999999988877642    6899999999999765433 34456667777766 999999999 999


Q ss_pred             HHHHHHHHHH
Q 006490          579 NVFSRIIWAA  588 (643)
Q Consensus       579 ~l~~~l~~~~  588 (643)
                      ++|+.+++.+
T Consensus       154 ~l~~~l~~~~  163 (164)
T cd04101         154 EPFESLARAF  163 (164)
T ss_pred             HHHHHHHHHh
Confidence            9999998864

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.90  E-value=1.2e-22  Score=200.29  Aligned_cols=172  Identities=19%  Similarity=0.305  Sum_probs=135.3

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill  503 (643)
                      +||+++|.+|||||||+++|+++++...+.||+.+ +....+.+.|....+.+|||+|++.+..+  ...++..+|++|+
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d-~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~--~~~~~~~ad~iIl   77 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIED-FHRKLYSIRGEVYQLDILDTSGNHPFPAM--RRLSILTGDVFIL   77 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhH-hEEEEEEECCEEEEEEEEECCCChhhhHH--HHHHhccCCEEEE
Confidence            48999999999999999999999988877788764 45566777766677889999999888776  5667899999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhcC------CCCCCCcEEEEEeCCCCCCccc-cHHHHHHHHHHh-CCCCcEEeeeccC
Q 006490          504 VYDSSDEYSWKRTKELLVEVARLGE------DSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQEL-GIEPPIPVSMKSK  575 (643)
Q Consensus       504 v~D~s~~~s~~~~~~~~~~i~~~~~------~~~~~~pvilv~NK~Dl~~~~~-~~~~~~~~~~~~-~~~~~~~vSa~~g  575 (643)
                      |||++++.||+.+..|..++.....      ....++|+|+|+||+|+...+. ..++..+++... ++ +++++||++|
T Consensus        78 Vfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~-~~~evSAktg  156 (247)
T cd04143          78 VFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENC-AYFEVSAKKN  156 (247)
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCC-EEEEEeCCCC
Confidence            9999999999999999888865421      0112789999999999975332 344555555433 34 4899999999


Q ss_pred             -CHHHHHHHHHHHHhCCCCCCCCcc
Q 006490          576 -DLNNVFSRIIWAAEHPHLNIPETE  599 (643)
Q Consensus       576 -~i~~l~~~l~~~~~~~~~~~~~~~  599 (643)
                       |++++|++|.+.+..|....|...
T Consensus       157 ~gI~elf~~L~~~~~~p~e~~~~~~  181 (247)
T cd04143         157 SNLDEMFRALFSLAKLPNEMSPSLH  181 (247)
T ss_pred             CCHHHHHHHHHHHhccccccCcccc
Confidence             999999999998866665544443

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.90  E-value=1.4e-22  Score=188.48  Aligned_cols=160  Identities=23%  Similarity=0.403  Sum_probs=137.3

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill  503 (643)
                      +||+++|++|||||||++++++..+...+.++.+.++....+...+....+.+||++|++.+...  ....++.+|++++
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~--~~~~~~~~d~~il   78 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSI--TSSYYRGAVGALL   78 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHH--HHHHhCCCCEEEE
Confidence            58999999999999999999999887777677777777777788765667889999999888876  6788899999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccc-cHHHHHHHHHHhCCCCcEEeeeccC-CHHHHH
Q 006490          504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-DLNNVF  581 (643)
Q Consensus       504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l~  581 (643)
                      |||++++.+++.+..|+..+......   ++|+++|+||+|+..... ..+....+++..++. ++++||++| |+++++
T Consensus        79 v~d~~~~~s~~~~~~~l~~~~~~~~~---~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~e~Sa~~~~~i~~l~  154 (164)
T smart00175       79 VYDITNRESFENLKNWLKELREYADP---NVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLP-FFETSAKTNTNVEEAF  154 (164)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCCC---CCeEEEEEEchhcccccCCCHHHHHHHHHHcCCe-EEEEeCCCCCCHHHHH
Confidence            99999999999999999988776532   799999999999876433 356677888888886 999999999 999999


Q ss_pred             HHHHHHHh
Q 006490          582 SRIIWAAE  589 (643)
Q Consensus       582 ~~l~~~~~  589 (643)
                      +.+.+.+.
T Consensus       155 ~~i~~~~~  162 (164)
T smart00175      155 EELAREIL  162 (164)
T ss_pred             HHHHHHHh
Confidence            99998763

Rab GTPases are implicated in vesicle trafficking.

>cd01868 Rab11_like Rab11-like

Probab=99.90  E-value=5.8e-23  Score=191.42  Aligned_cols=159  Identities=20%  Similarity=0.257  Sum_probs=126.6

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (643)
Q Consensus        12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v   89 (643)
                      .+||+++|++|||||||+++|++..+.....++.+...  .........+.+.+|||||++.+......+++.++++|+|
T Consensus         3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v   82 (165)
T cd01868           3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV   82 (165)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEE
Confidence            37999999999999999999999987655433333222  3334445557899999999998888889999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHhcCC-CCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHH
Q 006490           90 YACNQQSTLSRLSSYWLPELRRLEI-KVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (643)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~~~~-~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  168 (643)
                      ||++++.+++.+. +|+..++.... ++|+++|+||+|+...+.. . .+....++...+  .+++++||++|.|++++|
T Consensus        83 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~-~-~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~l~  157 (165)
T cd01868          83 YDITKKQTFENVE-RWLKELRDHADSNIVIMLVGNKSDLRHLRAV-P-TEEAKAFAEKNG--LSFIETSALDGTNVEEAF  157 (165)
T ss_pred             EECcCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECccccccccC-C-HHHHHHHHHHcC--CEEEEEECCCCCCHHHHH
Confidence            9999999999988 59998877654 5899999999999765443 2 333455555543  369999999999999999


Q ss_pred             HHHHHHH
Q 006490          169 YYAQKAV  175 (643)
Q Consensus       169 ~~i~~~~  175 (643)
                      +++...+
T Consensus       158 ~~l~~~i  164 (165)
T cd01868         158 KQLLTEI  164 (165)
T ss_pred             HHHHHHh
Confidence            9988764

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04126 Rab20 Rab20 subfamily

Probab=99.90  E-value=1.1e-22  Score=196.52  Aligned_cols=156  Identities=17%  Similarity=0.296  Sum_probs=127.0

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill  503 (643)
                      +||+|+|.+|||||||+++|+++++.. +.||++.++....+    +...+.+||++|++.+..+  +..+++.+|++|+
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l--~~~~~~~ad~~Il   73 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGL--GSMYCRGAAAVIL   73 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhh--HHHHhccCCEEEE
Confidence            489999999999999999999999864 45676655443322    3456789999999988887  6778999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC-------------------ccc-cHHHHHHHHHHhC
Q 006490          504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP-------------------YTM-AVQDSARVTQELG  563 (643)
Q Consensus       504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~-------------------~~~-~~~~~~~~~~~~~  563 (643)
                      |||++++.||+.+..|+..+.+....   +.|+|+|+||+|+..                   .+. ..++...++++.+
T Consensus        74 V~Dvt~~~Sf~~l~~~~~~l~~~~~~---~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~  150 (220)
T cd04126          74 TYDVSNVQSLEELEDRFLGLTDTANE---DCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRIN  150 (220)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCC---CCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhC
Confidence            99999999999999888777654322   689999999999965                   122 2678888888876


Q ss_pred             C-------------CCcEEeeeccC-CHHHHHHHHHHHHh
Q 006490          564 I-------------EPPIPVSMKSK-DLNNVFSRIIWAAE  589 (643)
Q Consensus       564 ~-------------~~~~~vSa~~g-~i~~l~~~l~~~~~  589 (643)
                      .             .++++|||++| |++++|..+++.+.
T Consensus       151 ~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~  190 (220)
T cd04126         151 KYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVL  190 (220)
T ss_pred             ccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            1             24999999999 99999999998764

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04118 Rab24 Rab24 subfamily

Probab=99.90  E-value=1.1e-22  Score=194.64  Aligned_cols=159  Identities=18%  Similarity=0.286  Sum_probs=133.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEE
Q 006490          424 FRCLLFGPQNAGKSALLNSFLERPFSE-NYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~~~~~-~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~il  502 (643)
                      +||+|+|++|||||||+++|+++.+.. .+.+|++..+....+..+|....+.+||++|++.+..+  ...+++++|+++
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~--~~~~~~~~d~ii   78 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAM--SRIYYRGAKAAI   78 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhh--hHhhcCCCCEEE
Confidence            489999999999999999999998874 56678877777777888876677889999999888777  667788999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcc----c-cHHHHHHHHHHhCCCCcEEeeeccC-C
Q 006490          503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT----M-AVQDSARVTQELGIEPPIPVSMKSK-D  576 (643)
Q Consensus       503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~----~-~~~~~~~~~~~~~~~~~~~vSa~~g-~  576 (643)
                      +|||++++.+|+.+..|+..+.....    +.|+++|+||+|+....    . ..+.+..++..++.. ++++||++| |
T Consensus        79 lv~d~~~~~s~~~~~~~~~~i~~~~~----~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~g  153 (193)
T cd04118          79 VCYDLTDSSSFERAKFWVKELQNLEE----HCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQ-HFETSSKTGQN  153 (193)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhcCC----CCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCe-EEEEeCCCCCC
Confidence            99999999999999999998876533    78999999999986432    1 134566777777776 899999999 9


Q ss_pred             HHHHHHHHHHHHh
Q 006490          577 LNNVFSRIIWAAE  589 (643)
Q Consensus       577 i~~l~~~l~~~~~  589 (643)
                      ++++|+.+.+.+.
T Consensus       154 v~~l~~~i~~~~~  166 (193)
T cd04118         154 VDELFQKVAEDFV  166 (193)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999774

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.90  E-value=1.8e-22  Score=187.59  Aligned_cols=159  Identities=24%  Similarity=0.368  Sum_probs=136.3

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill  503 (643)
                      +||+++|++|||||||+|++++.++...+.+|.+..+....+...+...++.+||++|++.+...  +..+++.+|++++
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~--~~~~~~~~~~~i~   79 (163)
T cd01860           2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSL--APMYYRGAAAAIV   79 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHH--HHHHhccCCEEEE
Confidence            79999999999999999999999987767778777777777778766678889999999888776  6678899999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccc-cHHHHHHHHHHhCCCCcEEeeeccC-CHHHHH
Q 006490          504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-DLNNVF  581 (643)
Q Consensus       504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l~  581 (643)
                      |+|++++.+++....|+..+..... .  +.|+++|+||+|+..... ..+....++..+++. ++++||++| |+.++|
T Consensus        80 v~d~~~~~s~~~~~~~~~~~~~~~~-~--~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~l~  155 (163)
T cd01860          80 VYDITSEESFEKAKSWVKELQRNAS-P--NIIIALVGNKADLESKRQVSTEEAQEYADENGLL-FFETSAKTGENVNELF  155 (163)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhCC-C--CCeEEEEEECccccccCcCCHHHHHHHHHHcCCE-EEEEECCCCCCHHHHH
Confidence            9999999999999999998877653 2  789999999999875333 355677788888865 999999999 999999


Q ss_pred             HHHHHHH
Q 006490          582 SRIIWAA  588 (643)
Q Consensus       582 ~~l~~~~  588 (643)
                      ++|.+.+
T Consensus       156 ~~l~~~l  162 (163)
T cd01860         156 TEIAKKL  162 (163)
T ss_pred             HHHHHHh
Confidence            9998865

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd01866 Rab2 Rab2 subfamily

Probab=99.90  E-value=7.9e-23  Score=191.05  Aligned_cols=160  Identities=20%  Similarity=0.269  Sum_probs=128.3

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (643)
Q Consensus        12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v   89 (643)
                      .+||+|+|++|||||||++++++..+....+++.+...  ....+......+.+|||||.+.+......+++.+|++|+|
T Consensus         4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v   83 (168)
T cd01866           4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV   83 (168)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence            47999999999999999999999887666544433322  2234445567899999999998888888999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHH
Q 006490           90 YACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (643)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  168 (643)
                      ||++++.+++.+. .|+..++.. .+++|+++|+||+|+...... . .+....+....+  ..++++||+++.|++++|
T Consensus        84 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~-~-~~~~~~~~~~~~--~~~~e~Sa~~~~~i~~~~  158 (168)
T cd01866          84 YDITRRETFNHLT-SWLEDARQHSNSNMTIMLIGNKCDLESRREV-S-YEEGEAFAKEHG--LIFMETSAKTASNVEEAF  158 (168)
T ss_pred             EECCCHHHHHHHH-HHHHHHHHhCCCCCcEEEEEECcccccccCC-C-HHHHHHHHHHcC--CEEEEEeCCCCCCHHHHH
Confidence            9999999999998 499888764 468999999999999755443 2 333455556554  369999999999999999


Q ss_pred             HHHHHHHh
Q 006490          169 YYAQKAVL  176 (643)
Q Consensus       169 ~~i~~~~~  176 (643)
                      .++.+.+.
T Consensus       159 ~~~~~~~~  166 (168)
T cd01866         159 INTAKEIY  166 (168)
T ss_pred             HHHHHHHH
Confidence            99887754

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>PLN03108 Rab family protein; Provisional

Probab=99.90  E-value=2.1e-22  Score=194.80  Aligned_cols=162  Identities=18%  Similarity=0.304  Sum_probs=139.1

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i  501 (643)
                      ..+||+|+|++|||||||+++|++..+...+.+|.+.++....+.+.+....+.+||++|++.+..+  +..+++.+|++
T Consensus         5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~--~~~~~~~ad~~   82 (210)
T PLN03108          5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSI--TRSYYRGAAGA   82 (210)
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHH--HHHHhccCCEE
Confidence            4589999999999999999999999988888888887777777777766667889999999888776  67888999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHH
Q 006490          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNN  579 (643)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~  579 (643)
                      ++|||++++.+|+.+..|+..+......   +.|+++|+||+|+...+.. .++.+++++.++++ ++++||+++ |+++
T Consensus        83 vlv~D~~~~~s~~~l~~~~~~~~~~~~~---~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~e~Sa~~~~~v~e  158 (210)
T PLN03108         83 LLVYDITRRETFNHLASWLEDARQHANA---NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLI-FMEASAKTAQNVEE  158 (210)
T ss_pred             EEEEECCcHHHHHHHHHHHHHHHHhcCC---CCcEEEEEECccCccccCCCHHHHHHHHHHcCCE-EEEEeCCCCCCHHH
Confidence            9999999999999999998887655432   7899999999999765433 56788889888886 999999999 9999


Q ss_pred             HHHHHHHHHh
Q 006490          580 VFSRIIWAAE  589 (643)
Q Consensus       580 l~~~l~~~~~  589 (643)
                      +|+++++.+.
T Consensus       159 ~f~~l~~~~~  168 (210)
T PLN03108        159 AFIKTAAKIY  168 (210)
T ss_pred             HHHHHHHHHH
Confidence            9999998764

>cd04142 RRP22 RRP22 subfamily

Probab=99.90  E-value=1e-22  Score=194.64  Aligned_cols=164  Identities=19%  Similarity=0.239  Sum_probs=121.5

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchh--------hhHHhhcc
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKG--------KLNEELKR   82 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~~~~   82 (643)
                      +||+|+|++|||||||+++|+++.|...+.++.+...  ....+.+..+.+.+|||||...+..        ....+++.
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~   80 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN   80 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence            5899999999999999999999988766544333221  2223444557899999999764321        12345789


Q ss_pred             CCEEEEEEECCCcccHHHHHHHHHHHHHhc----CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCc
Q 006490           83 ADAVVLTYACNQQSTLSRLSSYWLPELRRL----EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSA  158 (643)
Q Consensus        83 ad~il~v~d~~~~~s~~~~~~~~~~~l~~~----~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  158 (643)
                      +|++|+|||++++.+++.+.. |.+.+...    ..++|+++|+||+|+...+.+  ..+..+.+..+... .++++|||
T Consensus        81 ad~iilv~D~~~~~S~~~~~~-~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~--~~~~~~~~~~~~~~-~~~~e~Sa  156 (198)
T cd04142          81 SRAFILVYDICSPDSFHYVKL-LRQQILETRPAGNKEPPIVVVGNKRDQQRHRFA--PRHVLSVLVRKSWK-CGYLECSA  156 (198)
T ss_pred             CCEEEEEEECCCHHHHHHHHH-HHHHHHHhcccCCCCCCEEEEEECccccccccc--cHHHHHHHHHHhcC-CcEEEecC
Confidence            999999999999999999874 77777543    357999999999999765433  23334455433222 36999999


Q ss_pred             ccCCChhHHHHHHHHHHhCCCC
Q 006490          159 TTMIQVPDVFYYAQKAVLHPTA  180 (643)
Q Consensus       159 ~~~~gi~~l~~~i~~~~~~~~~  180 (643)
                      ++|.||+++|+.+.+.+.....
T Consensus       157 k~g~~v~~lf~~i~~~~~~~~~  178 (198)
T cd04142         157 KYNWHILLLFKELLISATTRGR  178 (198)
T ss_pred             CCCCCHHHHHHHHHHHhhccCC
Confidence            9999999999999988765443

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=99.90  E-value=3.5e-24  Score=177.45  Aligned_cols=161  Identities=20%  Similarity=0.330  Sum_probs=144.1

Q ss_pred             EEcCCCCCHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEEEEe
Q 006490          428 LFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYD  506 (643)
Q Consensus       428 ivG~~nvGKSSLln~l~~~~~~~~~~-~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv~D  506 (643)
                      ++|++++|||.|+-++-.+.|....- +|.+.++.-+.++.++...++.+|||+|++++.++  +..++++||+++++||
T Consensus         2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsv--t~ayyrda~allllyd   79 (192)
T KOG0083|consen    2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSV--THAYYRDADALLLLYD   79 (192)
T ss_pred             ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhh--hHhhhcccceeeeeee
Confidence            68999999999999998887765443 68888999999999988999999999999999999  8999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHHHHHHH
Q 006490          507 SSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNNVFSRI  584 (643)
Q Consensus       507 ~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l~~~l  584 (643)
                      +.+..||+....|+.+|.++..+   ...+.+++||+|+..++.+ .++.+.+++.++++ ++++|||+| |++-.|-.|
T Consensus        80 iankasfdn~~~wlsei~ey~k~---~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ip-fmetsaktg~nvd~af~~i  155 (192)
T KOG0083|consen   80 IANKASFDNCQAWLSEIHEYAKE---AVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIP-FMETSAKTGFNVDLAFLAI  155 (192)
T ss_pred             cccchhHHHHHHHHHHHHHHHHh---hHhHhhhccccccchhhccccchHHHHHHHHCCC-ceeccccccccHhHHHHHH
Confidence            99999999999999999988765   5788999999999775555 77899999999998 999999999 999999999


Q ss_pred             HHHHhCCCCC
Q 006490          585 IWAAEHPHLN  594 (643)
Q Consensus       585 ~~~~~~~~~~  594 (643)
                      .+.+.+....
T Consensus       156 a~~l~k~~~~  165 (192)
T KOG0083|consen  156 AEELKKLKMG  165 (192)
T ss_pred             HHHHHHhccC
Confidence            9987655444

>cd01864 Rab19 Rab19 subfamily

Probab=99.90  E-value=6.1e-23  Score=191.24  Aligned_cols=159  Identities=17%  Similarity=0.281  Sum_probs=126.5

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (643)
Q Consensus        12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v   89 (643)
                      .+||+++|++|||||||+++|.++.+.....++.+...  ....+....+.+.+|||||++.+...+..+++.+|++++|
T Consensus         3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv   82 (165)
T cd01864           3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAIIA   82 (165)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence            47999999999999999999999887666544333222  2233344457899999999988888888999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHH
Q 006490           90 YACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (643)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  168 (643)
                      ||++++.+++.+. .|+..+... ..++|+++|+||+|+...+..  ..+....+++.++. ..++++||++|.|++++|
T Consensus        83 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~-~~~~e~Sa~~~~~v~~~~  158 (165)
T cd01864          83 YDITRRSSFESVP-HWIEEVEKYGASNVVLLLIGNKCDLEEQREV--LFEEACTLAEKNGM-LAVLETSAKESQNVEEAF  158 (165)
T ss_pred             EECcCHHHHHhHH-HHHHHHHHhCCCCCcEEEEEECccccccccc--CHHHHHHHHHHcCC-cEEEEEECCCCCCHHHHH
Confidence            9999999999987 598888764 357899999999999765443  23344566666653 368999999999999999


Q ss_pred             HHHHHH
Q 006490          169 YYAQKA  174 (643)
Q Consensus       169 ~~i~~~  174 (643)
                      +++.+.
T Consensus       159 ~~l~~~  164 (165)
T cd01864         159 LLMATE  164 (165)
T ss_pred             HHHHHh
Confidence            998764

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>PLN03110 Rab GTPase; Provisional

Probab=99.90  E-value=9.8e-23  Score=197.95  Aligned_cols=171  Identities=20%  Similarity=0.227  Sum_probs=134.9

Q ss_pred             CCCCCCCCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHh
Q 006490            2 PGGSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEE   79 (643)
Q Consensus         2 ~~~~~~~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~   79 (643)
                      +.+........+||+++|++|||||||+++|++..+...+.++.+...  ....+....+.+.||||+|++++...+..+
T Consensus         2 ~~~~~~~~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~   81 (216)
T PLN03110          2 AHRVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAY   81 (216)
T ss_pred             CCCcccccCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHH
Confidence            333333344568999999999999999999999987655444333322  333445566889999999999998889999


Q ss_pred             hccCCEEEEEEECCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCc
Q 006490           80 LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSA  158 (643)
Q Consensus        80 ~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  158 (643)
                      ++.+|++|+|||++++.+++.+. .|+..++... .+.|+++|+||+|+...+..  ..+....+...++  .+++++||
T Consensus        82 ~~~~~~~ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~--~~~~~~~l~~~~~--~~~~e~SA  156 (216)
T PLN03110         82 YRGAVGALLVYDITKRQTFDNVQ-RWLRELRDHADSNIVIMMAGNKSDLNHLRSV--AEEDGQALAEKEG--LSFLETSA  156 (216)
T ss_pred             hCCCCEEEEEEECCChHHHHHHH-HHHHHHHHhCCCCCeEEEEEEChhcccccCC--CHHHHHHHHHHcC--CEEEEEeC
Confidence            99999999999999999999987 5998887654 47999999999998765443  3344566666654  47999999


Q ss_pred             ccCCChhHHHHHHHHHHhC
Q 006490          159 TTMIQVPDVFYYAQKAVLH  177 (643)
Q Consensus       159 ~~~~gi~~l~~~i~~~~~~  177 (643)
                      ++|.|++++|+.+...+..
T Consensus       157 ~~g~~v~~lf~~l~~~i~~  175 (216)
T PLN03110        157 LEATNVEKAFQTILLEIYH  175 (216)
T ss_pred             CCCCCHHHHHHHHHHHHHH
Confidence            9999999999999887754

>cd04177 RSR1 RSR1 subgroup

Probab=99.90  E-value=1.9e-22  Score=188.42  Aligned_cols=161  Identities=25%  Similarity=0.396  Sum_probs=134.6

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill  503 (643)
                      +||+++|.+|||||||++++.++.+...+.+|++..+ ...+..++....+.+||++|++.+..+  ...+++.+|++++
T Consensus         2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~~~~vl   78 (168)
T cd04177           2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSY-RKQVEIDGRQCDLEILDTAGTEQFTAM--RELYIKSGQGFLL   78 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEeCCCcccchhh--hHHHHhhCCEEEE
Confidence            6899999999999999999999998877778777544 455667766677889999999988887  7788899999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHHHH
Q 006490          504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNNVF  581 (643)
Q Consensus       504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l~  581 (643)
                      |||++++.+++....|...+.+.....  ++|+++|+||+|+...+.. .+....+++.++..+++++||++| |++++|
T Consensus        79 v~~~~~~~s~~~~~~~~~~i~~~~~~~--~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f  156 (168)
T cd04177          79 VYSVTSEASLNELGELREQVLRIKDSD--NVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVF  156 (168)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCCC--CCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHH
Confidence            999999999999999988887643333  7999999999999764433 456667778888555999999999 999999


Q ss_pred             HHHHHHHh
Q 006490          582 SRIIWAAE  589 (643)
Q Consensus       582 ~~l~~~~~  589 (643)
                      +++.+.+.
T Consensus       157 ~~i~~~~~  164 (168)
T cd04177         157 IDLVRQII  164 (168)
T ss_pred             HHHHHHHh
Confidence            99998653

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd04113 Rab4 Rab4 subfamily

Probab=99.90  E-value=7.5e-23  Score=189.83  Aligned_cols=157  Identities=21%  Similarity=0.264  Sum_probs=127.0

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEE
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~   90 (643)
                      +||+|+|++|||||||+++|++..+....+++.+...  ....+....+.+.+|||||++.+...+..+++.+|++++||
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence            5899999999999999999999987666544433222  33344555678999999999988888889999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHHH
Q 006490           91 ACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY  169 (643)
Q Consensus        91 d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  169 (643)
                      |++++.++..+. .|+..++.. .+++|+++|+||+|+......  ..+....+...++  ..++++||+++.|++++|+
T Consensus        81 d~~~~~s~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~  155 (161)
T cd04113          81 DITNRTSFEALP-TWLSDARALASPNIVVILVGNKSDLADQREV--TFLEASRFAQENG--LLFLETSALTGENVEEAFL  155 (161)
T ss_pred             ECCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEEchhcchhccC--CHHHHHHHHHHcC--CEEEEEECCCCCCHHHHHH
Confidence            999999999988 488887654 468999999999999765443  2334455666665  4799999999999999999


Q ss_pred             HHHHH
Q 006490          170 YAQKA  174 (643)
Q Consensus       170 ~i~~~  174 (643)
                      ++.+.
T Consensus       156 ~~~~~  160 (161)
T cd04113         156 KCARS  160 (161)
T ss_pred             HHHHh
Confidence            98865

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.90  E-value=5.2e-23  Score=191.08  Aligned_cols=158  Identities=25%  Similarity=0.382  Sum_probs=135.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEE
Q 006490           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA   91 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d   91 (643)
                      ||+++|++|||||||+++|.+..+...+.++.+...  ....+....+.+.+||++|.+.+......+++++|++|+|||
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd   80 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD   80 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            799999999999999999999998877655543333  444555678889999999999888888899999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHHhcCC-CCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHHHH
Q 006490           92 CNQQSTLSRLSSYWLPELRRLEI-KVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYY  170 (643)
Q Consensus        92 ~~~~~s~~~~~~~~~~~l~~~~~-~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  170 (643)
                      ++++.+++.+. .|++.+....+ +.|++||+||+|+...+.+  ..+..+.++++++  .+++++||+++.||.++|..
T Consensus        81 ~~~~~S~~~~~-~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v--~~~~~~~~~~~~~--~~~~e~Sa~~~~~v~~~f~~  155 (162)
T PF00071_consen   81 VTDEESFENLK-KWLEEIQKYKPEDIPIIVVGNKSDLSDEREV--SVEEAQEFAKELG--VPYFEVSAKNGENVKEIFQE  155 (162)
T ss_dssp             TTBHHHHHTHH-HHHHHHHHHSTTTSEEEEEEETTTGGGGSSS--CHHHHHHHHHHTT--SEEEEEBTTTTTTHHHHHHH
T ss_pred             ccccccccccc-cccccccccccccccceeeeccccccccccc--hhhHHHHHHHHhC--CEEEEEECCCCCCHHHHHHH
Confidence            99999999999 69999988776 6999999999998875554  3345678888887  47999999999999999999


Q ss_pred             HHHHHh
Q 006490          171 AQKAVL  176 (643)
Q Consensus       171 i~~~~~  176 (643)
                      +++.+.
T Consensus       156 ~i~~i~  161 (162)
T PF00071_consen  156 LIRKIL  161 (162)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            988764

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd01892 Miro2 Miro2 subfamily

Probab=99.90  E-value=9.3e-23  Score=190.52  Aligned_cols=164  Identities=17%  Similarity=0.174  Sum_probs=127.4

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCE
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVP-EKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADA   85 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~   85 (643)
                      .|+.+||+++|++|||||||+++|+++.|. ..+.++.+...  ....+.+..+.+.+||++|.+.+......+++++|+
T Consensus         1 ~~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~   80 (169)
T cd01892           1 QRNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDV   80 (169)
T ss_pred             CCeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCE
Confidence            367899999999999999999999999987 66555444322  223444556789999999999888888889999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChh
Q 006490           86 VVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP  165 (643)
Q Consensus        86 il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  165 (643)
                      +|+|||++++.+++.+. .|...+... .++|+++|+||+|+.+....  .....+.+++.++. ..++++||++|.|++
T Consensus        81 ~llv~d~~~~~s~~~~~-~~~~~~~~~-~~~p~iiv~NK~Dl~~~~~~--~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~  155 (169)
T cd01892          81 ACLVYDSSDPKSFSYCA-EVYKKYFML-GEIPCLFVAAKADLDEQQQR--YEVQPDEFCRKLGL-PPPLHFSSKLGDSSN  155 (169)
T ss_pred             EEEEEeCCCHHHHHHHH-HHHHHhccC-CCCeEEEEEEcccccccccc--cccCHHHHHHHcCC-CCCEEEEeccCccHH
Confidence            99999999999998886 477766432 37999999999998654332  11223455666652 246999999999999


Q ss_pred             HHHHHHHHHHhC
Q 006490          166 DVFYYAQKAVLH  177 (643)
Q Consensus       166 ~l~~~i~~~~~~  177 (643)
                      ++|+.+.+.+..
T Consensus       156 ~lf~~l~~~~~~  167 (169)
T cd01892         156 ELFTKLATAAQY  167 (169)
T ss_pred             HHHHHHHHHhhC
Confidence            999999887653

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd01862 Rab7 Rab7 subfamily

Probab=99.90  E-value=3.3e-22  Score=187.58  Aligned_cols=165  Identities=19%  Similarity=0.311  Sum_probs=136.3

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill  503 (643)
                      +||+++|++|||||||+|++.+..+...+.+|...++....+.+++....+.+||++|++.+..+  +..+++++|++|+
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--~~~~~~~~d~~i~   78 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSL--GVAFYRGADCCVL   78 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhH--HHHHhcCCCEEEE
Confidence            48999999999999999999999887777677776777777788866667789999999888776  6788999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhcCC-CCCCCcEEEEEeCCCCCCcc-ccHHHHHHHHHHhCCCCcEEeeeccC-CHHHH
Q 006490          504 VYDSSDEYSWKRTKELLVEVARLGED-SGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK-DLNNV  580 (643)
Q Consensus       504 v~D~s~~~s~~~~~~~~~~i~~~~~~-~~~~~pvilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l  580 (643)
                      |||++++.+++....|...+...... ...++|+++|+||+|+..+. ...+..+.+++..+..+++++||++| |++++
T Consensus        79 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l  158 (172)
T cd01862          79 VYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQA  158 (172)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHH
Confidence            99999999999888888876554331 11268999999999998432 23566778888888556999999999 99999


Q ss_pred             HHHHHHHHhC
Q 006490          581 FSRIIWAAEH  590 (643)
Q Consensus       581 ~~~l~~~~~~  590 (643)
                      ++.+.+.+..
T Consensus       159 ~~~i~~~~~~  168 (172)
T cd01862         159 FETIARKALE  168 (172)
T ss_pred             HHHHHHHHHh
Confidence            9999987753

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=4.1e-23  Score=175.26  Aligned_cols=166  Identities=20%  Similarity=0.293  Sum_probs=135.9

Q ss_pred             CCCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCC
Q 006490            7 SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRAD   84 (643)
Q Consensus         7 ~~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad   84 (643)
                      +...--+|++++|+.|.|||+|+.+|+.+++..+..-+.+...  ..+.+..+.++++||||+|++++.+....++++|-
T Consensus         4 EtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAA   83 (214)
T KOG0086|consen    4 ETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAA   83 (214)
T ss_pred             hhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhcccc
Confidence            3344458999999999999999999999998776554444433  33455567899999999999999999999999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCC
Q 006490           85 AVVLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQ  163 (643)
Q Consensus        85 ~il~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  163 (643)
                      +.++|||++++++++.+.. |+..++... +++.+||++||.|+...+++ +..+.. .++++-. + .+.++||++|+|
T Consensus        84 GAlLVYD~TsrdsfnaLtn-WL~DaR~lAs~nIvviL~GnKkDL~~~R~V-tflEAs-~FaqEne-l-~flETSa~TGeN  158 (214)
T KOG0086|consen   84 GALLVYDITSRDSFNALTN-WLTDARTLASPNIVVILCGNKKDLDPEREV-TFLEAS-RFAQENE-L-MFLETSALTGEN  158 (214)
T ss_pred             ceEEEEeccchhhHHHHHH-HHHHHHhhCCCcEEEEEeCChhhcChhhhh-hHHHHH-hhhcccc-e-eeeeeccccccc
Confidence            9999999999999999996 999998764 67889999999999998887 555543 3333322 2 589999999999


Q ss_pred             hhHHHHHHHHHHhC
Q 006490          164 VPDVFYYAQKAVLH  177 (643)
Q Consensus       164 i~~l~~~i~~~~~~  177 (643)
                      |++.|-...+.++.
T Consensus       159 VEEaFl~c~~tIl~  172 (214)
T KOG0086|consen  159 VEEAFLKCARTILN  172 (214)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999888777653

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.90  E-value=1.6e-22  Score=192.56  Aligned_cols=156  Identities=22%  Similarity=0.326  Sum_probs=123.1

Q ss_pred             eEEEEEEcCCCCCHHHHHH-HHhcCC-----CCCCCCCCcc--cceEEE-------EEEcCCCcEEEEEEecCCchhhhh
Q 006490          423 VFRCLLFGPQNAGKSALLN-SFLERP-----FSENYAPTTG--EQYAVN-------VVDQPGGNKKTLILQEIPEEGVKK  487 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln-~l~~~~-----~~~~~~~t~~--~~~~~~-------~v~~~g~~~~~~i~d~~g~~~~~~  487 (643)
                      .+||+++|.+|||||||++ ++.++.     +...+.||+.  +.+...       .+..+|....+.+|||+|++.  .
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence            4799999999999999996 665543     3455667774  223222       124566677888999999875  2


Q ss_pred             hhccHHhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCC-------------------
Q 006490          488 ILSNKEALASCDVTIFVYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKP-------------------  547 (643)
Q Consensus       488 ~~~~~~~~~~ad~illv~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~-------------------  547 (643)
                      +  ...++++||++++|||++++.||+.+. .|+..+.....    +.|+++|+||+||..                   
T Consensus        80 ~--~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~----~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~  153 (195)
T cd01873          80 D--RRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCP----RVPVILVGCKLDLRYADLDEVNRARRPLARPIKN  153 (195)
T ss_pred             h--hcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCC----CCCEEEEEEchhccccccchhhhccccccccccc
Confidence            3  445789999999999999999999997 59888876643    789999999999864                   


Q ss_pred             -ccccHHHHHHHHHHhCCCCcEEeeeccC-CHHHHHHHHHHH
Q 006490          548 -YTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNVFSRIIWA  587 (643)
Q Consensus       548 -~~~~~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l~~~l~~~  587 (643)
                       .....++++.+++++++. +++|||++| |++++|+.++++
T Consensus       154 ~~~V~~~e~~~~a~~~~~~-~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         154 ADILPPETGRAVAKELGIP-YYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             CCccCHHHHHHHHHHhCCE-EEEcCCCCCCCHHHHHHHHHHh
Confidence             122377899999999995 999999999 999999999874

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=99.90  E-value=1.1e-23  Score=179.83  Aligned_cols=165  Identities=15%  Similarity=0.258  Sum_probs=136.0

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEE
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV   86 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i   86 (643)
                      ..-.+||+++|..-||||||+-|++.++|....-.+.....  ....+......+.||||+|+++|..+-+.|+++++++
T Consensus        10 ~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGa   89 (218)
T KOG0088|consen   10 KSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGA   89 (218)
T ss_pred             CceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCce
Confidence            33468999999999999999999999998654222111111  3344555667799999999999999999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChh
Q 006490           87 VLTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP  165 (643)
Q Consensus        87 l~v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  165 (643)
                      |+|||++++++|+.+.. |..+++.. +..+.+++|+||+|+...+.+ + .+..+.++...|.  .|+++||+++.||.
T Consensus        90 lLVyDITDrdSFqKVKn-WV~Elr~mlGnei~l~IVGNKiDLEeeR~V-t-~qeAe~YAesvGA--~y~eTSAk~N~Gi~  164 (218)
T KOG0088|consen   90 LLVYDITDRDSFQKVKN-WVLELRTMLGNEIELLIVGNKIDLEEERQV-T-RQEAEAYAESVGA--LYMETSAKDNVGIS  164 (218)
T ss_pred             EEEEeccchHHHHHHHH-HHHHHHHHhCCeeEEEEecCcccHHHhhhh-h-HHHHHHHHHhhch--hheecccccccCHH
Confidence            99999999999999996 99999875 456888999999999988887 3 3446778888885  59999999999999


Q ss_pred             HHHHHHHHHHhCC
Q 006490          166 DVFYYAQKAVLHP  178 (643)
Q Consensus       166 ~l~~~i~~~~~~~  178 (643)
                      ++|+.+...++..
T Consensus       165 elFe~Lt~~MiE~  177 (218)
T KOG0088|consen  165 ELFESLTAKMIEH  177 (218)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999988877544

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=99.89  E-value=2e-23  Score=178.24  Aligned_cols=162  Identities=17%  Similarity=0.277  Sum_probs=143.3

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (643)
                      .-.|||+++|..=||||||+-+++..+|....-.|....+..+.+.+.+.+..+.||||+|+++|..+  -+-+++++++
T Consensus        11 s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHAL--GPIYYRgSnG   88 (218)
T KOG0088|consen   11 SFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHAL--GPIYYRGSNG   88 (218)
T ss_pred             ceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhcc--CceEEeCCCc
Confidence            34699999999999999999999999998766667666677777777766778889999999999998  7789999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHH
Q 006490          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLN  578 (643)
Q Consensus       501 illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~  578 (643)
                      +++|||++|++||+.++.|..+++.....   .+.+++|+||+||.+++++ .++++.+++..|.. ++++||+.+ ||.
T Consensus        89 alLVyDITDrdSFqKVKnWV~Elr~mlGn---ei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~-y~eTSAk~N~Gi~  164 (218)
T KOG0088|consen   89 ALLVYDITDRDSFQKVKNWVLELRTMLGN---EIELLIVGNKIDLEEERQVTRQEAEAYAESVGAL-YMETSAKDNVGIS  164 (218)
T ss_pred             eEEEEeccchHHHHHHHHHHHHHHHHhCC---eeEEEEecCcccHHHhhhhhHHHHHHHHHhhchh-heecccccccCHH
Confidence            99999999999999999999999876543   5789999999999987766 77889999999987 999999999 999


Q ss_pred             HHHHHHHHHH
Q 006490          579 NVFSRIIWAA  588 (643)
Q Consensus       579 ~l~~~l~~~~  588 (643)
                      ++|+.|....
T Consensus       165 elFe~Lt~~M  174 (218)
T KOG0088|consen  165 ELFESLTAKM  174 (218)
T ss_pred             HHHHHHHHHH
Confidence            9999998854

>cd04149 Arf6 Arf6 subfamily

Probab=99.89  E-value=8.5e-23  Score=190.51  Aligned_cols=157  Identities=9%  Similarity=0.064  Sum_probs=116.2

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v   89 (643)
                      ++.+||+++|++|||||||+++|..+.+....|+ .+....  .+...++.+.+|||||++.+...+..+++++|++|+|
T Consensus         7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t-~g~~~~--~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v   83 (168)
T cd04149           7 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPT-VGFNVE--TVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV   83 (168)
T ss_pred             CCccEEEEECcCCCCHHHHHHHHccCCCccccCC-cccceE--EEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence            4568999999999999999999998776543333 222221  2334678999999999998888888999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCCCCCccchhhhhhhHHHH--hhc-ccceEEEeCcccCCChh
Q 006490           90 YACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQ--QFR-EIETCVECSATTMIQVP  165 (643)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~Sa~~~~gi~  165 (643)
                      ||++++.+++.....|.+.+... ..++|++||+||+|+....   .. +.++....  ... ...+++++||++|.|++
T Consensus        84 ~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~---~~-~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~  159 (168)
T cd04149          84 VDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAM---KP-HEIQEKLGLTRIRDRNWYVQPSCATSGDGLY  159 (168)
T ss_pred             EeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCC---CH-HHHHHHcCCCccCCCcEEEEEeeCCCCCChH
Confidence            99999999998876444454432 3579999999999986431   11 22222211  111 11257999999999999


Q ss_pred             HHHHHHHH
Q 006490          166 DVFYYAQK  173 (643)
Q Consensus       166 ~l~~~i~~  173 (643)
                      ++|+++.+
T Consensus       160 ~~~~~l~~  167 (168)
T cd04149         160 EGLTWLSS  167 (168)
T ss_pred             HHHHHHhc
Confidence            99998864

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.89  E-value=9.3e-23  Score=194.45  Aligned_cols=154  Identities=16%  Similarity=0.260  Sum_probs=125.1

Q ss_pred             EcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECCCc
Q 006490           18 VGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQ   95 (643)
Q Consensus        18 vG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~~   95 (643)
                      +|++|||||||+++++.+.+...+.++.+...  ....++...+.+.||||+|++.+..++..+++.+|++|+|||++++
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~   80 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR   80 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence            69999999999999998888766555443322  3334456678999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHHHHHHHHH
Q 006490           96 STLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAV  175 (643)
Q Consensus        96 ~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~  175 (643)
                      .+++.+. .|.+.+++.++++|++||+||+|+... .+ .. +. ..+++..+  ..+++|||++|.||.++|+++++.+
T Consensus        81 ~S~~~i~-~w~~~i~~~~~~~piilvgNK~Dl~~~-~v-~~-~~-~~~~~~~~--~~~~e~SAk~~~~v~~~F~~l~~~i  153 (200)
T smart00176       81 VTYKNVP-NWHRDLVRVCENIPIVLCGNKVDVKDR-KV-KA-KS-ITFHRKKN--LQYYDISAKSNYNFEKPFLWLARKL  153 (200)
T ss_pred             HHHHHHH-HHHHHHHHhCCCCCEEEEEECcccccc-cC-CH-HH-HHHHHHcC--CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            9999998 599999887779999999999998642 22 22 22 24444443  3699999999999999999999987


Q ss_pred             hCC
Q 006490          176 LHP  178 (643)
Q Consensus       176 ~~~  178 (643)
                      ...
T Consensus       154 ~~~  156 (200)
T smart00176      154 IGD  156 (200)
T ss_pred             Hhc
Confidence            543

Ran is involved in the active transport of proteins through nuclear pores.

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.89  E-value=1.6e-22  Score=199.36  Aligned_cols=163  Identities=16%  Similarity=0.221  Sum_probs=126.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe-eeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEE
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA   91 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d   91 (643)
                      +||+++|++|||||||+++|+++.|...+.++.+.. .....+.+..+.+.||||+|.+.+..+...++..+|++|+|||
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfd   80 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFS   80 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEe
Confidence            589999999999999999999998876655544432 2333455556889999999998888888888999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHHhc----------CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccC
Q 006490           92 CNQQSTLSRLSSYWLPELRRL----------EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM  161 (643)
Q Consensus        92 ~~~~~s~~~~~~~~~~~l~~~----------~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  161 (643)
                      ++++.+++.+. .|...+...          ..++|+|+|+||+|+...+.+ ..++ +..+..... ...++++||++|
T Consensus        81 v~~~~Sf~~i~-~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v-~~~e-i~~~~~~~~-~~~~~evSAktg  156 (247)
T cd04143          81 LDNRESFEEVC-RLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREV-QRDE-VEQLVGGDE-NCAYFEVSAKKN  156 (247)
T ss_pred             CCCHHHHHHHH-HHHHHHHHhhcccccccccCCCCcEEEEEECccchhcccc-CHHH-HHHHHHhcC-CCEEEEEeCCCC
Confidence            99999999987 487777532          247999999999999764443 3333 333333221 136999999999


Q ss_pred             CChhHHHHHHHHHHhCCC
Q 006490          162 IQVPDVFYYAQKAVLHPT  179 (643)
Q Consensus       162 ~gi~~l~~~i~~~~~~~~  179 (643)
                      .||+++|+++......+.
T Consensus       157 ~gI~elf~~L~~~~~~p~  174 (247)
T cd04143         157 SNLDEMFRALFSLAKLPN  174 (247)
T ss_pred             CCHHHHHHHHHHHhcccc
Confidence            999999999998765443

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd04125 RabA_like RabA-like subfamily

Probab=99.89  E-value=1.6e-22  Score=192.71  Aligned_cols=160  Identities=21%  Similarity=0.296  Sum_probs=128.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEE
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~   90 (643)
                      +||+++|++|||||||+++|++..+...+.++.+...  ....++...+.+.+|||+|.+.+...+..+++++|++|+||
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~   80 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY   80 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence            5899999999999999999999988664444333322  23344455688999999999988888999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHHH
Q 006490           91 ACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY  169 (643)
Q Consensus        91 d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  169 (643)
                      |++++.+++.+.. |++.+.... .+.|+++|+||+|+.....+  ..+....+....+  .+++++||++|.|++++|+
T Consensus        81 d~~~~~s~~~i~~-~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v--~~~~~~~~~~~~~--~~~~evSa~~~~~i~~~f~  155 (188)
T cd04125          81 DVTDQESFENLKF-WINEINRYARENVIKVIVANKSDLVNNKVV--DSNIAKSFCDSLN--IPFFETSAKQSINVEEAFI  155 (188)
T ss_pred             ECcCHHHHHHHHH-HHHHHHHhCCCCCeEEEEEECCCCcccccC--CHHHHHHHHHHcC--CeEEEEeCCCCCCHHHHHH
Confidence            9999999999985 999887653 46899999999998765443  2233445555554  2699999999999999999


Q ss_pred             HHHHHHhC
Q 006490          170 YAQKAVLH  177 (643)
Q Consensus       170 ~i~~~~~~  177 (643)
                      ++.+.+..
T Consensus       156 ~l~~~~~~  163 (188)
T cd04125         156 LLVKLIIK  163 (188)
T ss_pred             HHHHHHHH
Confidence            99988753

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.89  E-value=1.6e-22  Score=188.27  Aligned_cols=158  Identities=16%  Similarity=0.253  Sum_probs=123.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcC--CCCCCCCCCCCCee--eCCcc-cCCceeEEEEeCCCCCcchhhhHHhhccCCEEE
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATE--SVPEKVPPVHAPTR--LPPDF-YPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~--~~~~~~~~~~~~~~--~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il   87 (643)
                      +||+++|++|||||||+++|...  .+..++.++.+...  ....+ ....+.+.+|||||++.+..+...+++++|+++
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            58999999999999999999865  46556554443222  11222 345688999999999888888899999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHH
Q 006490           88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV  167 (643)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  167 (643)
                      +|||++++.+++.+. .|+..+.....++|+++|+||+|+...... . ....+.+...++  .++++|||++|.|++++
T Consensus        81 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~-~-~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l  155 (164)
T cd04101          81 LVYDVSNKASFENCS-RWVNKVRTASKHMPGVLVGNKMDLADKAEV-T-DAQAQAFAQANQ--LKFFKTSALRGVGYEEP  155 (164)
T ss_pred             EEEECcCHHHHHHHH-HHHHHHHHhCCCCCEEEEEECcccccccCC-C-HHHHHHHHHHcC--CeEEEEeCCCCCChHHH
Confidence            999999999999887 599988776667999999999999765443 2 222344445544  36899999999999999


Q ss_pred             HHHHHHHH
Q 006490          168 FYYAQKAV  175 (643)
Q Consensus       168 ~~~i~~~~  175 (643)
                      |+.+.+.+
T Consensus       156 ~~~l~~~~  163 (164)
T cd04101         156 FESLARAF  163 (164)
T ss_pred             HHHHHHHh
Confidence            99988764

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.89  E-value=1.6e-22  Score=190.31  Aligned_cols=162  Identities=24%  Similarity=0.378  Sum_probs=127.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe-eeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEE
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA   91 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d   91 (643)
                      .||+|+|++|||||||+++|.++.+...+.++.... .....+....+.+.+|||+|++.+......++.++|++++|||
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~   81 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS   81 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEE
Confidence            589999999999999999999998876654433332 2333445566789999999999888877788999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCcc----------chhhhhhhHHHHhhcccceEEEeCcccC
Q 006490           92 CNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA----------TSLEEVMGPIMQQFREIETCVECSATTM  161 (643)
Q Consensus        92 ~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  161 (643)
                      ++++.+++.+...|...++...+++|+++|+||+|+......          .......+.+...++. .++++|||++|
T Consensus        82 ~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~-~~~~~~Sa~~~  160 (175)
T cd01870          82 IDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGA-FGYMECSAKTK  160 (175)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCC-cEEEEeccccC
Confidence            999999999877799988876678999999999998643210          0112334555555543 36999999999


Q ss_pred             CChhHHHHHHHHHH
Q 006490          162 IQVPDVFYYAQKAV  175 (643)
Q Consensus       162 ~gi~~l~~~i~~~~  175 (643)
                      .|++++|+++.+.+
T Consensus       161 ~~v~~lf~~l~~~~  174 (175)
T cd01870         161 EGVREVFEMATRAA  174 (175)
T ss_pred             cCHHHHHHHHHHHh
Confidence            99999999998754

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.89  E-value=2.7e-22  Score=184.82  Aligned_cols=153  Identities=18%  Similarity=0.270  Sum_probs=122.3

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill  503 (643)
                      +||+++|++|||||||+++++.+.+...+.|+ ...+ ...+.+.|....+.+||++|++.       ..+++.+|++++
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~-~~~i~~~~~~~~l~i~D~~g~~~-------~~~~~~~~~~il   71 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRF-KKEVLVDGQSHLLLIRDEGGAPD-------AQFASWVDAVIF   71 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccce-EEEEEECCEEEEEEEEECCCCCc-------hhHHhcCCEEEE
Confidence            48999999999999999999998887766444 3334 35567776666788999999864       235678999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC--cc-ccHHHHHHHHHHhCCCCcEEeeeccC-CHHH
Q 006490          504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP--YT-MAVQDSARVTQELGIEPPIPVSMKSK-DLNN  579 (643)
Q Consensus       504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~--~~-~~~~~~~~~~~~~~~~~~~~vSa~~g-~i~~  579 (643)
                      |||++++.||+.+..|+..+.......  +.|+++|+||.|+..  .+ ...++.+++++..+..++++|||++| ||++
T Consensus        72 v~d~~~~~sf~~~~~~~~~i~~~~~~~--~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~  149 (158)
T cd04103          72 VFSLENEASFQTVYNLYHQLSSYRNIS--EIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVER  149 (158)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHH
Confidence            999999999999999999988765322  789999999999853  22 22566778888775334999999999 9999


Q ss_pred             HHHHHHHH
Q 006490          580 VFSRIIWA  587 (643)
Q Consensus       580 l~~~l~~~  587 (643)
                      +|+.+++.
T Consensus       150 ~f~~~~~~  157 (158)
T cd04103         150 VFQEAAQK  157 (158)
T ss_pred             HHHHHHhh
Confidence            99998764

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>PLN03118 Rab family protein; Provisional

Probab=99.89  E-value=4.4e-22  Score=193.11  Aligned_cols=170  Identities=20%  Similarity=0.295  Sum_probs=135.9

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i  501 (643)
                      ..+||+|+|++|||||||+++|++..+. .+.+|.+.++....+...+....+.+||++|++.+..+  +..+++.+|++
T Consensus        13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~--~~~~~~~~d~~   89 (211)
T PLN03118         13 LSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTL--TSSYYRNAQGI   89 (211)
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHH--HHHHHhcCCEE
Confidence            4689999999999999999999998764 34567776676666767756677889999999988877  77889999999


Q ss_pred             EEEEeCCChhhHHHHHH-HHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHH
Q 006490          502 IFVYDSSDEYSWKRTKE-LLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLN  578 (643)
Q Consensus       502 llv~D~s~~~s~~~~~~-~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~  578 (643)
                      ++|||++++.+|+.+.. |...+.......  +.|+++|+||+|+...+.. .+....++...++. ++++||++| |++
T Consensus        90 vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~--~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~-~~e~SAk~~~~v~  166 (211)
T PLN03118         90 ILVYDVTRRETFTNLSDVWGKEVELYSTNQ--DCVKMLVGNKVDRESERDVSREEGMALAKEHGCL-FLECSAKTRENVE  166 (211)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEECccccccCccCHHHHHHHHHHcCCE-EEEEeCCCCCCHH
Confidence            99999999999999876 555554433322  6899999999999764433 45666777888876 999999999 999


Q ss_pred             HHHHHHHHHHhCCCCCCCC
Q 006490          579 NVFSRIIWAAEHPHLNIPE  597 (643)
Q Consensus       579 ~l~~~l~~~~~~~~~~~~~  597 (643)
                      ++|++|.+.+.......++
T Consensus       167 ~l~~~l~~~~~~~~~~~~~  185 (211)
T PLN03118        167 QCFEELALKIMEVPSLLEE  185 (211)
T ss_pred             HHHHHHHHHHHhhhhhhhc
Confidence            9999999987644333333

>cd04177 RSR1 RSR1 subgroup

Probab=99.89  E-value=2.4e-22  Score=187.79  Aligned_cols=161  Identities=23%  Similarity=0.334  Sum_probs=128.7

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe-eeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEE
Q 006490           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (643)
Q Consensus        12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~   90 (643)
                      ++||+++|++|||||||+++|.++.+...+.++.+.. .....+....+.+.+|||||++.+..+++.+++.++++++||
T Consensus         1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~   80 (168)
T cd04177           1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY   80 (168)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence            4799999999999999999999988866654443322 233345556688999999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHH
Q 006490           91 ACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (643)
Q Consensus        91 d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  168 (643)
                      |++++.+++.+.. |...+.+.  ..+.|+++|+||+|+...+.. . .+....+.+.++. .+++++||++|.|++++|
T Consensus        81 ~~~~~~s~~~~~~-~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~-~-~~~~~~~~~~~~~-~~~~~~SA~~~~~i~~~f  156 (168)
T cd04177          81 SVTSEASLNELGE-LREQVLRIKDSDNVPMVLVGNKADLEDDRQV-S-REDGVSLSQQWGN-VPFYETSARKRTNVDEVF  156 (168)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHhhCCCCCCEEEEEEChhccccCcc-C-HHHHHHHHHHcCC-ceEEEeeCCCCCCHHHHH
Confidence            9999999999874 88777542  357999999999999765443 2 2334455566553 369999999999999999


Q ss_pred             HHHHHHHh
Q 006490          169 YYAQKAVL  176 (643)
Q Consensus       169 ~~i~~~~~  176 (643)
                      +++.+.+.
T Consensus       157 ~~i~~~~~  164 (168)
T cd04177         157 IDLVRQII  164 (168)
T ss_pred             HHHHHHHh
Confidence            99988654

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd04123 Rab21 Rab21 subfamily

Probab=99.89  E-value=5.7e-22  Score=183.89  Aligned_cols=159  Identities=19%  Similarity=0.352  Sum_probs=133.5

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill  503 (643)
                      +||+++|++|||||||+|+|++..+...+.++++..+....+...+....+.+||++|++.+..+  +...++.+|++++
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--~~~~~~~~~~~i~   78 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHAL--GPIYYRDADGAIL   78 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHh--hHHHhccCCEEEE
Confidence            48999999999999999999999887766677766666666666655567889999999888776  6778899999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHHHH
Q 006490          504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNNVF  581 (643)
Q Consensus       504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l~  581 (643)
                      |+|++++.+++....|+..+......   ++|+++|+||+|+...... .+...++.+..+.. ++++||++| |+++++
T Consensus        79 v~d~~~~~s~~~~~~~~~~i~~~~~~---~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~gi~~~~  154 (162)
T cd04123          79 VYDITDADSFQKVKKWIKELKQMRGN---NISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAK-HFETSAKTGKGIEELF  154 (162)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCCC---CCeEEEEEECcccccccCCCHHHHHHHHHHcCCE-EEEEeCCCCCCHHHHH
Confidence            99999999999999999888776543   6899999999999854433 55667778888876 899999999 999999


Q ss_pred             HHHHHHH
Q 006490          582 SRIIWAA  588 (643)
Q Consensus       582 ~~l~~~~  588 (643)
                      +++.+.+
T Consensus       155 ~~l~~~~  161 (162)
T cd04123         155 LSLAKRM  161 (162)
T ss_pred             HHHHHHh
Confidence            9998754

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd04116 Rab9 Rab9 subfamily

Probab=99.89  E-value=1.7e-22  Score=189.29  Aligned_cols=159  Identities=21%  Similarity=0.251  Sum_probs=126.3

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEE
Q 006490           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (643)
Q Consensus        11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (643)
                      ..+||+++|++|||||||+++++++.+.....++.+...  ....+....+.+.||||||++.+...+..+++.+|++++
T Consensus         4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~   83 (170)
T cd04116           4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLL   83 (170)
T ss_pred             eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEE
Confidence            458999999999999999999999887665433333221  233455667889999999999988899999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHhcC-----CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCC
Q 006490           89 TYACNQQSTLSRLSSYWLPELRRLE-----IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQ  163 (643)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~~~-----~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  163 (643)
                      |||++++.+++.+. .|...+....     .+.|+++|+||+|+.. ...  ..+....++.+++. .+++++||++|.|
T Consensus        84 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~--~~~~~~~~~~~~~~-~~~~e~Sa~~~~~  158 (170)
T cd04116          84 TFAVDDSQSFQNLS-NWKKEFIYYADVKEPESFPFVVLGNKNDIPE-RQV--STEEAQAWCRENGD-YPYFETSAKDATN  158 (170)
T ss_pred             EEECCCHHHHHhHH-HHHHHHHHhcccccCCCCcEEEEEECccccc-ccc--CHHHHHHHHHHCCC-CeEEEEECCCCCC
Confidence            99999999999987 4887765432     4689999999999863 222  23445667776652 3689999999999


Q ss_pred             hhHHHHHHHHH
Q 006490          164 VPDVFYYAQKA  174 (643)
Q Consensus       164 i~~l~~~i~~~  174 (643)
                      +.++|+.+++.
T Consensus       159 v~~~~~~~~~~  169 (170)
T cd04116         159 VAAAFEEAVRR  169 (170)
T ss_pred             HHHHHHHHHhh
Confidence            99999998864

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04135 Tc10 TC10 subfamily

Probab=99.89  E-value=2.7e-22  Score=188.68  Aligned_cols=158  Identities=25%  Similarity=0.431  Sum_probs=129.3

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill  503 (643)
                      +||+++|++|||||||++++.++.+...+.||....+.. .+..++....+.+||++|++.+..+  ....++.+|++++
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~~~~il   77 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAV-SVTVGGKQYLLGLYDTAGQEDYDRL--RPLSYPMTDVFLI   77 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEE-EEEECCEEEEEEEEeCCCccccccc--ccccCCCCCEEEE
Confidence            589999999999999999999999887777776654433 4556655556779999999888776  6677899999999


Q ss_pred             EEeCCChhhHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcc-------------ccHHHHHHHHHHhCCCCcEE
Q 006490          504 VYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-------------MAVQDSARVTQELGIEPPIP  569 (643)
Q Consensus       504 v~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~-------------~~~~~~~~~~~~~~~~~~~~  569 (643)
                      |||++++.+|+.+. .|+..+.....    +.|+++|+||+|+.+..             ...+++..+++.+++.++++
T Consensus        78 v~~~~~~~s~~~~~~~~~~~l~~~~~----~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e  153 (174)
T cd04135          78 CFSVVNPASFQNVKEEWVPELKEYAP----NVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVE  153 (174)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCC----CCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEE
Confidence            99999999999886 57777765422    79999999999986532             12456778888899867999


Q ss_pred             eeeccC-CHHHHHHHHHHHH
Q 006490          570 VSMKSK-DLNNVFSRIIWAA  588 (643)
Q Consensus       570 vSa~~g-~i~~l~~~l~~~~  588 (643)
                      |||++| |++++|+.+++.+
T Consensus       154 ~Sa~~~~gi~~~f~~~~~~~  173 (174)
T cd04135         154 CSALTQKGLKTVFDEAILAI  173 (174)
T ss_pred             ecCCcCCCHHHHHHHHHHHh
Confidence            999999 9999999998865

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=99.89  E-value=1.6e-22  Score=173.90  Aligned_cols=161  Identities=19%  Similarity=0.269  Sum_probs=134.4

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeC--Ccc-cCCceeEEEEeCCCCCcchhhhHHhhccCCEEE
Q 006490           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLP--PDF-YPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (643)
Q Consensus        11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il   87 (643)
                      -.++++++|++-||||||+..++.+++.+-..++.+.....  ..+ .+..+++.+|||+|++++.+.+..+++++-+++
T Consensus         7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvl   86 (213)
T KOG0091|consen    7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVL   86 (213)
T ss_pred             EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceE
Confidence            35799999999999999999999999877755555544311  122 245788999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHhc--CCCCcEE-EEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCCh
Q 006490           88 LTYACNQQSTLSRLSSYWLPELRRL--EIKVPII-VAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQV  164 (643)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvi-lv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  164 (643)
                      +|||++++.+|+.+.. |+.+...+  +|+++|. |||+|+|+...+.+  ..++.+.+++.+|  ..++++||++|.||
T Consensus        87 lvyditnr~sfehv~~-w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqV--t~EEaEklAa~hg--M~FVETSak~g~NV  161 (213)
T KOG0091|consen   87 LVYDITNRESFEHVEN-WVKEAAMATQGPDKVVFLLVGHKSDLQSQRQV--TAEEAEKLAASHG--MAFVETSAKNGCNV  161 (213)
T ss_pred             EEEeccchhhHHHHHH-HHHHHHHhcCCCCeeEEEEeccccchhhhccc--cHHHHHHHHHhcC--ceEEEecccCCCcH
Confidence            9999999999999985 99888654  3666664 69999999988877  4556788999988  37999999999999


Q ss_pred             hHHHHHHHHHHh
Q 006490          165 PDVFYYAQKAVL  176 (643)
Q Consensus       165 ~~l~~~i~~~~~  176 (643)
                      ++.|+.+.+.+.
T Consensus       162 eEAF~mlaqeIf  173 (213)
T KOG0091|consen  162 EEAFDMLAQEIF  173 (213)
T ss_pred             HHHHHHHHHHHH
Confidence            999998887654

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.89  E-value=2.8e-22  Score=188.30  Aligned_cols=156  Identities=19%  Similarity=0.383  Sum_probs=128.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill  503 (643)
                      +||+++|++|||||||++++.++.+...+.||..+.+. ..+...+....+.+||++|++.+..+  +..+++++|++++
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~a~~~i~   77 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFS-VVVLVDGKPVRLQLCDTAGQDEFDKL--RPLCYPDTDVFLL   77 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeee-EEEEECCEEEEEEEEECCCChhhccc--cccccCCCcEEEE
Confidence            58999999999999999999999888878777755443 34566655677889999999888777  5668899999999


Q ss_pred             EEeCCChhhHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcc-------------ccHHHHHHHHHHhCCCCcEE
Q 006490          504 VYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-------------MAVQDSARVTQELGIEPPIP  569 (643)
Q Consensus       504 v~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~-------------~~~~~~~~~~~~~~~~~~~~  569 (643)
                      |||++++.+|+.+. .|+..+.....    +.|+++|+||+|+....             ...+++..+++..+..++++
T Consensus        78 v~d~~~~~sf~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e  153 (173)
T cd04130          78 CFSVVNPSSFQNISEKWIPEIRKHNP----KAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIE  153 (173)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCC----CCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEE
Confidence            99999999999885 58877775432    78999999999986421             22567788899999866999


Q ss_pred             eeeccC-CHHHHHHHHHH
Q 006490          570 VSMKSK-DLNNVFSRIIW  586 (643)
Q Consensus       570 vSa~~g-~i~~l~~~l~~  586 (643)
                      |||++| |++++|+.++-
T Consensus       154 ~Sa~~~~~v~~lf~~~~~  171 (173)
T cd04130         154 CSALTQKNLKEVFDTAIL  171 (173)
T ss_pred             EeCCCCCCHHHHHHHHHh
Confidence            999999 99999998764

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd04111 Rab39 Rab39 subfamily

Probab=99.89  E-value=2.6e-22  Score=194.10  Aligned_cols=160  Identities=20%  Similarity=0.277  Sum_probs=127.6

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcc-cCCceeEEEEeCCCCCcchhhhHHhhccCCEEEE
Q 006490           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDF-YPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (643)
Q Consensus        12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (643)
                      .+||+|+|++|||||||+++|++..+.....++.+...  ....+ ....+.+.+|||+|++.+......+++.+|++|+
T Consensus         2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil   81 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL   81 (211)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence            48999999999999999999999888666444333222  11222 2346789999999999988888899999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHhcC--CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhH
Q 006490           89 TYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (643)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  166 (643)
                      |||++++.+++++.. |...+....  ...|+++|+||+|+.....+  ..+....+++.++  .+++++||++|.||++
T Consensus        82 v~D~~~~~Sf~~l~~-~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v--~~~~~~~~~~~~~--~~~~e~Sak~g~~v~e  156 (211)
T cd04111          82 VFDITNRESFEHVHD-WLEEARSHIQPHRPVFILVGHKCDLESQRQV--TREEAEKLAKDLG--MKYIETSARTGDNVEE  156 (211)
T ss_pred             EEECCCHHHHHHHHH-HHHHHHHhcCCCCCeEEEEEEcccccccccc--CHHHHHHHHHHhC--CEEEEEeCCCCCCHHH
Confidence            999999999999984 888886542  35778999999999765444  3344567777776  4799999999999999


Q ss_pred             HHHHHHHHHh
Q 006490          167 VFYYAQKAVL  176 (643)
Q Consensus       167 l~~~i~~~~~  176 (643)
                      +|+++.+.+.
T Consensus       157 ~f~~l~~~~~  166 (211)
T cd04111         157 AFELLTQEIY  166 (211)
T ss_pred             HHHHHHHHHH
Confidence            9999988764

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.89  E-value=1.8e-22  Score=188.08  Aligned_cols=157  Identities=24%  Similarity=0.324  Sum_probs=123.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-CeeeCCcccCCceeEEEEeCCCCCc-chhhhHHhhccCCEEEEEEE
Q 006490           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLE-NKGKLNEELKRADAVVLTYA   91 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~-~~~~~~~~~~~ad~il~v~d   91 (643)
                      ||+++|++|||||||+++++.+.+...++++.. .......++...+.+.+|||||... +......+++.+|++|+|||
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d   80 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS   80 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence            699999999999999999999888666555432 2223344555667899999999885 34556788999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHHhc---CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccC-CChhHH
Q 006490           92 CNQQSTLSRLSSYWLPELRRL---EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM-IQVPDV  167 (643)
Q Consensus        92 ~~~~~s~~~~~~~~~~~l~~~---~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~-~gi~~l  167 (643)
                      ++++.+++.+. .|...+...   ..++|+++|+||+|+.....+ . .+....+++.++  .+++++||++| .||+++
T Consensus        81 ~~~~~s~~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v-~-~~~~~~~~~~~~--~~~~e~Sa~~~~~~v~~~  155 (165)
T cd04146          81 ITDRSSFDEIS-QLKQLIREIKKRDREIPVILVGNKADLLHYRQV-S-TEEGEKLASELG--CLFFEVSAAEDYDGVHSV  155 (165)
T ss_pred             CCCHHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECCchHHhCcc-C-HHHHHHHHHHcC--CEEEEeCCCCCchhHHHH
Confidence            99999999987 488888764   348999999999998665444 2 334456666666  37999999999 599999


Q ss_pred             HHHHHHHH
Q 006490          168 FYYAQKAV  175 (643)
Q Consensus       168 ~~~i~~~~  175 (643)
                      |+.+.+.+
T Consensus       156 f~~l~~~~  163 (165)
T cd04146         156 FHELCREV  163 (165)
T ss_pred             HHHHHHHH
Confidence            99998764

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd04148 RGK RGK subfamily

Probab=99.89  E-value=5.3e-22  Score=193.31  Aligned_cols=157  Identities=22%  Similarity=0.240  Sum_probs=122.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCCCC--CeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhc-cCCEEEE
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATESVP-EKVPPVHA--PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELK-RADAVVL   88 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~-~ad~il~   88 (643)
                      +||+++|++|||||||+++|+.+.+. ..++++.+  .......++.....+.+|||+|++  ......++. .+|++++
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil   78 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV   78 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence            58999999999999999999988875 44444332  222334555677889999999987  233445667 9999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHhcC--CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhH
Q 006490           89 TYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (643)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  166 (643)
                      |||++++.+++.+. .|+..+....  .++|+|+|+||+|+.....+ .. +....++..++  .+++++||++|.||++
T Consensus        79 V~d~td~~S~~~~~-~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v-~~-~~~~~~a~~~~--~~~~e~SA~~~~gv~~  153 (221)
T cd04148          79 VYSVTDRSSFERAS-ELRIQLRRNRQLEDRPIILVGNKSDLARSREV-SV-QEGRACAVVFD--CKFIETSAGLQHNVDE  153 (221)
T ss_pred             EEECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEEChhcccccee-cH-HHHHHHHHHcC--CeEEEecCCCCCCHHH
Confidence            99999999999887 4888886643  57999999999999765544 32 33355666655  3689999999999999


Q ss_pred             HHHHHHHHHh
Q 006490          167 VFYYAQKAVL  176 (643)
Q Consensus       167 l~~~i~~~~~  176 (643)
                      +|+++.+.+.
T Consensus       154 l~~~l~~~~~  163 (221)
T cd04148         154 LLEGIVRQIR  163 (221)
T ss_pred             HHHHHHHHHH
Confidence            9999998874

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>PLN03118 Rab family protein; Provisional

Probab=99.89  E-value=4.4e-22  Score=193.12  Aligned_cols=166  Identities=22%  Similarity=0.315  Sum_probs=130.2

Q ss_pred             CCCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCC
Q 006490            7 SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRAD   84 (643)
Q Consensus         7 ~~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad   84 (643)
                      +.....+||+|+|++|||||||+++|++..+....+ +.+...  ....++...+.+.||||||++.+...+..+++.+|
T Consensus         9 ~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d   87 (211)
T PLN03118          9 SGYDLSFKILLIGDSGVGKSSLLVSFISSSVEDLAP-TIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQ   87 (211)
T ss_pred             cccCcceEEEEECcCCCCHHHHHHHHHhCCCCCcCC-CceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCC
Confidence            345567899999999999999999999987643333 333222  22334455678999999999999888999999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHHhcC--CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCC
Q 006490           85 AVVLTYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMI  162 (643)
Q Consensus        85 ~il~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  162 (643)
                      ++|+|||++++.+++.+...|...+....  .+.|+++|+||+|+...... . .+....+....+  ..++++||++|.
T Consensus        88 ~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i-~-~~~~~~~~~~~~--~~~~e~SAk~~~  163 (211)
T PLN03118         88 GIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDV-S-REEGMALAKEHG--CLFLECSAKTRE  163 (211)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCcc-C-HHHHHHHHHHcC--CEEEEEeCCCCC
Confidence            99999999999999999877887776542  36799999999999765443 2 233445555554  368999999999


Q ss_pred             ChhHHHHHHHHHHhC
Q 006490          163 QVPDVFYYAQKAVLH  177 (643)
Q Consensus       163 gi~~l~~~i~~~~~~  177 (643)
                      |++++|+++.+.+..
T Consensus       164 ~v~~l~~~l~~~~~~  178 (211)
T PLN03118        164 NVEQCFEELALKIME  178 (211)
T ss_pred             CHHHHHHHHHHHHHh
Confidence            999999999988754

>cd04118 Rab24 Rab24 subfamily

Probab=99.89  E-value=3.3e-22  Score=191.37  Aligned_cols=162  Identities=20%  Similarity=0.241  Sum_probs=126.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATESVPE-KVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v   89 (643)
                      +||+|+|++|||||||+++|+++.+.. .+.++.+...  ....+....+.+.+|||+|.+++......+++.+|++|+|
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv   80 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC   80 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence            589999999999999999999998764 3444333322  2334455567788999999998888888899999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCc--cchhhhhhhHHHHhhcccceEEEeCcccCCChhHH
Q 006490           90 YACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN--ATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV  167 (643)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  167 (643)
                      ||++++.+++.+. .|++.++...++.|+++|+||+|+.....  .....+....+...++  .+++++||++|.|++++
T Consensus        81 ~d~~~~~s~~~~~-~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~--~~~~~~Sa~~~~gv~~l  157 (193)
T cd04118          81 YDLTDSSSFERAK-FWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIK--AQHFETSSKTGQNVDEL  157 (193)
T ss_pred             EECCCHHHHHHHH-HHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcC--CeEEEEeCCCCCCHHHH
Confidence            9999999999987 59999887766899999999999864321  1011233445555554  36899999999999999


Q ss_pred             HHHHHHHHhC
Q 006490          168 FYYAQKAVLH  177 (643)
Q Consensus       168 ~~~i~~~~~~  177 (643)
                      |+++.+.+..
T Consensus       158 ~~~i~~~~~~  167 (193)
T cd04118         158 FQKVAEDFVS  167 (193)
T ss_pred             HHHHHHHHHH
Confidence            9999987753

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.89  E-value=3.8e-22  Score=185.48  Aligned_cols=159  Identities=21%  Similarity=0.261  Sum_probs=127.8

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe--eeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT--RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (643)
Q Consensus        12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v   89 (643)
                      ++||+++|++|||||||+|+|++..+.....++.+..  .....++...+.+.+|||||.+++...+..+++.+|++++|
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   80 (163)
T cd01860           1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence            4799999999999999999999999866433333321  23345566678899999999988888888999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHH
Q 006490           90 YACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (643)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  168 (643)
                      +|++++.+++... .|+..+.... ++.|+++|+||+|+......  ..+....+....+  ..++++||++|.|+.+++
T Consensus        81 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~l~  155 (163)
T cd01860          81 YDITSEESFEKAK-SWVKELQRNASPNIIIALVGNKADLESKRQV--STEEAQEYADENG--LLFFETSAKTGENVNELF  155 (163)
T ss_pred             EECcCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECccccccCcC--CHHHHHHHHHHcC--CEEEEEECCCCCCHHHHH
Confidence            9999999999988 5888886654 67899999999998754433  2234455666665  369999999999999999


Q ss_pred             HHHHHHH
Q 006490          169 YYAQKAV  175 (643)
Q Consensus       169 ~~i~~~~  175 (643)
                      +++.+.+
T Consensus       156 ~~l~~~l  162 (163)
T cd01860         156 TEIAKKL  162 (163)
T ss_pred             HHHHHHh
Confidence            9998764

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.88  E-value=4.2e-22  Score=186.49  Aligned_cols=159  Identities=20%  Similarity=0.305  Sum_probs=125.1

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcch-hhhHHhhccCCEEEE
Q 006490           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENK-GKLNEELKRADAVVL   88 (643)
Q Consensus        12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~-~~~~~~~~~ad~il~   88 (643)
                      .+||+++|++|||||||+++++...+.....++.+...  ....+....+.+.+|||+|++++. ...+.+++.+|++++
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~   81 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence            47999999999999999999999887655443332221  223445556889999999998775 467788999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHhcC--CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCccc---CCC
Q 006490           89 TYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATT---MIQ  163 (643)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~g  163 (643)
                      |||++++.+++.+. .|...+....  .++|+++|+||+|+.....+  ..+....+++...  .+++++||++   +.|
T Consensus        82 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~e~Sa~~~~~~~~  156 (170)
T cd04115          82 VYDVTNMASFHSLP-SWIEECEQHSLPNEVPRILVGNKCDLREQIQV--PTDLAQRFADAHS--MPLFETSAKDPSENDH  156 (170)
T ss_pred             EEECCCHHHHHhHH-HHHHHHHHhcCCCCCCEEEEEECccchhhcCC--CHHHHHHHHHHcC--CcEEEEeccCCcCCCC
Confidence            99999999999998 4998887643  57999999999998765544  2334455665554  4699999999   999


Q ss_pred             hhHHHHHHHHHH
Q 006490          164 VPDVFYYAQKAV  175 (643)
Q Consensus       164 i~~l~~~i~~~~  175 (643)
                      ++++|..+.+.+
T Consensus       157 i~~~f~~l~~~~  168 (170)
T cd04115         157 VEAIFMTLAHKL  168 (170)
T ss_pred             HHHHHHHHHHHh
Confidence            999999887654

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd01861 Rab6 Rab6 subfamily

Probab=99.88  E-value=6.4e-22  Score=183.49  Aligned_cols=157  Identities=17%  Similarity=0.253  Sum_probs=122.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEE
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~   90 (643)
                      +||+++|++|||||||+++|++..+.....++.+...  ....+....+.+.+|||||...+...+..+++.+|++++||
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~   80 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence            4899999999999999999999987665444333322  22333444578999999999998888899999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHHH
Q 006490           91 ACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY  169 (643)
Q Consensus        91 d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  169 (643)
                      |++++.+++.+. .|+..+... ..+.|+++|+||+|+......  ..+....+.+..+  ..++++||++|.|++++++
T Consensus        81 d~~~~~s~~~~~-~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~l~~  155 (161)
T cd01861          81 DITNRQSFDNTD-KWIDDVRDERGNDVIIVLVGNKTDLSDKRQV--STEEGEKKAKELN--AMFIETSAKAGHNVKELFR  155 (161)
T ss_pred             ECcCHHHHHHHH-HHHHHHHHhCCCCCEEEEEEEChhccccCcc--CHHHHHHHHHHhC--CEEEEEeCCCCCCHHHHHH
Confidence            999999999987 588877543 336999999999999644333  2233445555554  4699999999999999999


Q ss_pred             HHHHH
Q 006490          170 YAQKA  174 (643)
Q Consensus       170 ~i~~~  174 (643)
                      ++.+.
T Consensus       156 ~i~~~  160 (161)
T cd01861         156 KIASA  160 (161)
T ss_pred             HHHHh
Confidence            98764

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.88  E-value=6.1e-22  Score=184.19  Aligned_cols=159  Identities=23%  Similarity=0.335  Sum_probs=126.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEE
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~   90 (643)
                      +||+++|++|||||||+++|++..+.....++.+...  ....+....+.+.+|||||...+......+++.+|++++||
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence            5899999999999999999999887554333322221  22334444578999999999888888889999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHHH
Q 006490           91 ACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY  169 (643)
Q Consensus        91 d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  169 (643)
                      |++++.+++.+.. |+..+.... +++|+++|+||+|+......  ..+....+...++  .+++++||++|.|++++++
T Consensus        81 d~~~~~s~~~~~~-~l~~~~~~~~~~~pivvv~nK~D~~~~~~~--~~~~~~~~~~~~~--~~~~e~Sa~~~~~i~~l~~  155 (164)
T smart00175       81 DITNRESFENLKN-WLKELREYADPNVVIMLVGNKSDLEDQRQV--SREEAEAFAEEHG--LPFFETSAKTNTNVEEAFE  155 (164)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHhCCCCCeEEEEEEchhcccccCC--CHHHHHHHHHHcC--CeEEEEeCCCCCCHHHHHH
Confidence            9999999999884 988887654 68999999999998764433  2334555666665  3699999999999999999


Q ss_pred             HHHHHHh
Q 006490          170 YAQKAVL  176 (643)
Q Consensus       170 ~i~~~~~  176 (643)
                      .+.+.+.
T Consensus       156 ~i~~~~~  162 (164)
T smart00175      156 ELAREIL  162 (164)
T ss_pred             HHHHHHh
Confidence            9988754

Rab GTPases are implicated in vesicle trafficking.

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.88  E-value=6.3e-22  Score=184.41  Aligned_cols=159  Identities=23%  Similarity=0.389  Sum_probs=127.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhh-hhhhccHHhhccCCEEEE
Q 006490          425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV-KKILSNKEALASCDVTIF  503 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~-~~~~~~~~~~~~ad~ill  503 (643)
                      ||+++|++|||||||++++++..+...+.+|+...+. ..+...+....+.+||++|++.. ...  ...+++.+|++++
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~--~~~~~~~~d~~i~   77 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYS-RQVTIDGEQVSLEILDTAGQQQADTEQ--LERSIRWADGFVL   77 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhce-EEEEECCEEEEEEEEECCCCcccccch--HHHHHHhCCEEEE
Confidence            5899999999999999999998887777777655443 34455655667889999998742 222  5678899999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhcC-CCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC--CHHH
Q 006490          504 VYDSSDEYSWKRTKELLVEVARLGE-DSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK--DLNN  579 (643)
Q Consensus       504 v~D~s~~~s~~~~~~~~~~i~~~~~-~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g--~i~~  579 (643)
                      |||++++.||+.+..|+..+..... ..  ++|+++|+||+|+...+.. .+....+++..+.. ++++||++|  |+++
T Consensus        78 v~d~~~~~s~~~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~Sa~~~~~~v~~  154 (165)
T cd04146          78 VYSITDRSSFDEISQLKQLIREIKKRDR--EIPVILVGNKADLLHYRQVSTEEGEKLASELGCL-FFEVSAAEDYDGVHS  154 (165)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEECCchHHhCccCHHHHHHHHHHcCCE-EEEeCCCCCchhHHH
Confidence            9999999999999999888876543 22  7999999999998654333 55677888888865 999999997  6999


Q ss_pred             HHHHHHHHHh
Q 006490          580 VFSRIIWAAE  589 (643)
Q Consensus       580 l~~~l~~~~~  589 (643)
                      +|+.+++.+.
T Consensus       155 ~f~~l~~~~~  164 (165)
T cd04146         155 VFHELCREVR  164 (165)
T ss_pred             HHHHHHHHHh
Confidence            9999987653

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=5e-22  Score=166.31  Aligned_cols=162  Identities=19%  Similarity=0.360  Sum_probs=146.9

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (643)
                      ...+|..|+|+-|||||.|+..+...+|....+.|++..+-.+++.+.|...++.+|||+|++++..+  +..++++|.+
T Consensus         9 syifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfrav--trsyyrgaag   86 (215)
T KOG0097|consen    9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAV--TRSYYRGAAG   86 (215)
T ss_pred             hheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHH--HHHHhccccc
Confidence            45689999999999999999999999999888789999999999999988899999999999999999  8999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHH
Q 006490          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLN  578 (643)
Q Consensus       501 illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~  578 (643)
                      .++|||++.+.++..+..|+.+.+....+   +..+++++||.||...+.+ .++.++++++.|+. ++++|||+| |++
T Consensus        87 almvyditrrstynhlsswl~dar~ltnp---nt~i~lignkadle~qrdv~yeeak~faeengl~-fle~saktg~nve  162 (215)
T KOG0097|consen   87 ALMVYDITRRSTYNHLSSWLTDARNLTNP---NTVIFLIGNKADLESQRDVTYEEAKEFAEENGLM-FLEASAKTGQNVE  162 (215)
T ss_pred             eeEEEEehhhhhhhhHHHHHhhhhccCCC---ceEEEEecchhhhhhcccCcHHHHHHHHhhcCeE-EEEecccccCcHH
Confidence            99999999999999999999988766543   6789999999999886655 78899999999998 999999999 999


Q ss_pred             HHHHHHHHHH
Q 006490          579 NVFSRIIWAA  588 (643)
Q Consensus       579 ~l~~~l~~~~  588 (643)
                      +.|-...+.+
T Consensus       163 dafle~akki  172 (215)
T KOG0097|consen  163 DAFLETAKKI  172 (215)
T ss_pred             HHHHHHHHHH
Confidence            9887777654

>cd04129 Rho2 Rho2 subfamily

Probab=99.88  E-value=8.6e-22  Score=187.28  Aligned_cols=164  Identities=26%  Similarity=0.361  Sum_probs=127.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe-eeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEE
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA   91 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d   91 (643)
                      .||+|+|++|||||||++++..+.+...+.++.... .....+....+.+.+|||+|++.+....+..++.+|++++|||
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~   81 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFA   81 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEEE
Confidence            589999999999999999999877765533322222 2223344456778999999998877777778899999999999


Q ss_pred             CCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCC---------ccchhhhhhhHHHHhhcccceEEEeCcccCC
Q 006490           92 CNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH---------NATSLEEVMGPIMQQFREIETCVECSATTMI  162 (643)
Q Consensus        92 ~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  162 (643)
                      +++..+++.+...|.+.++...++.|+++|+||+|+....         .. ...+....+++.++. .++++|||++|.
T Consensus        82 i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~e~Sa~~~~  159 (187)
T cd04129          82 VDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRF-VPIQQGKRVAKEIGA-KKYMECSALTGE  159 (187)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCc-CCHHHHHHHHHHhCC-cEEEEccCCCCC
Confidence            9999999999877999998777789999999999985421         11 112334566676653 369999999999


Q ss_pred             ChhHHHHHHHHHHhCC
Q 006490          163 QVPDVFYYAQKAVLHP  178 (643)
Q Consensus       163 gi~~l~~~i~~~~~~~  178 (643)
                      ||+++|+.+.+.++..
T Consensus       160 ~v~~~f~~l~~~~~~~  175 (187)
T cd04129         160 GVDDVFEAATRAALLV  175 (187)
T ss_pred             CHHHHHHHHHHHHhcc
Confidence            9999999999877543

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.88  E-value=9.7e-22  Score=185.50  Aligned_cols=157  Identities=11%  Similarity=0.112  Sum_probs=118.1

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v   89 (643)
                      ...+||+++|++|||||||++++..+.+....|+ .+....  .+...++.+.+|||||++.+...+..+++++|++|+|
T Consensus        15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt-~g~~~~--~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V   91 (181)
T PLN00223         15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPT-IGFNVE--TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV   91 (181)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCccccCC-cceeEE--EEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence            4568999999999999999999998777543333 332222  3445678999999999998888999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHh-cCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcc------cceEEEeCcccCC
Q 006490           90 YACNQQSTLSRLSSYWLPELRR-LEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE------IETCVECSATTMI  162 (643)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~-~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~Sa~~~~  162 (643)
                      ||++++.+++.....+...+.. ..+++|++||+||+|+.....   .    ..+...++-      ...+++|||++|+
T Consensus        92 ~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~---~----~~~~~~l~l~~~~~~~~~~~~~Sa~~g~  164 (181)
T PLN00223         92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---A----AEITDKLGLHSLRQRHWYIQSTCATSGE  164 (181)
T ss_pred             EeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCC---H----HHHHHHhCccccCCCceEEEeccCCCCC
Confidence            9999999998887544444332 235799999999999875422   1    222222221      0135689999999


Q ss_pred             ChhHHHHHHHHHHh
Q 006490          163 QVPDVFYYAQKAVL  176 (643)
Q Consensus       163 gi~~l~~~i~~~~~  176 (643)
                      ||.++|+++.+.+.
T Consensus       165 gv~e~~~~l~~~~~  178 (181)
T PLN00223        165 GLYEGLDWLSNNIA  178 (181)
T ss_pred             CHHHHHHHHHHHHh
Confidence            99999999988764

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.88  E-value=2.6e-21  Score=179.89  Aligned_cols=160  Identities=24%  Similarity=0.427  Sum_probs=132.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill  503 (643)
                      +||+++|++|||||||++++++..+...+.+++.+.+. .....++....+.+||++|++.+..+  +...++.+|++++
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~--~~~~~~~~~~~i~   77 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEDVQLNILDTAGQEDYAAI--RDNYHRSGEGFLL   77 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEE-EEEEECCEEEEEEEEECCChhhhhHH--HHHHhhcCCEEEE
Confidence            48999999999999999999999888777777766543 34455556677889999999888877  7788999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcc-ccHHHHHHHHHHhCCCCcEEeeeccC-CHHHHH
Q 006490          504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK-DLNNVF  581 (643)
Q Consensus       504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l~  581 (643)
                      |+|++++.+|.....|...+.......  ++|+++|+||+|+.... ........+++.++++ ++++||++| |++++|
T Consensus        78 v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~l~  154 (164)
T cd04139          78 VFSITDMESFTATAEFREQILRVKDDD--NVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVP-YVETSAKTRQNVEKAF  154 (164)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEEccccccccccCHHHHHHHHHHhCCe-EEEeeCCCCCCHHHHH
Confidence            999999999999999988887764333  79999999999997632 3355666777888875 999999999 999999


Q ss_pred             HHHHHHHh
Q 006490          582 SRIIWAAE  589 (643)
Q Consensus       582 ~~l~~~~~  589 (643)
                      +.+.+.+.
T Consensus       155 ~~l~~~~~  162 (164)
T cd04139         155 YDLVREIR  162 (164)
T ss_pred             HHHHHHHH
Confidence            99988764

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd00157 Rho Rho (Ras homology) family

Probab=99.88  E-value=6.6e-22  Score=185.35  Aligned_cols=160  Identities=28%  Similarity=0.427  Sum_probs=126.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEE
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA   91 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d   91 (643)
                      +||+++|++|||||||+++|++..+... .++...............+.+.+|||||++++.......++.+|++++|||
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   80 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS   80 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence            5899999999999999999999987444 333222222333445667889999999999887778888899999999999


Q ss_pred             CCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccc---------hhhhhhhHHHHhhcccceEEEeCcccCC
Q 006490           92 CNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNAT---------SLEEVMGPIMQQFREIETCVECSATTMI  162 (643)
Q Consensus        92 ~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  162 (643)
                      ++++.++.....+|...+.....++|+++|+||+|+.......         ...+....+...++. .+++++||++|.
T Consensus        81 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~Sa~~~~  159 (171)
T cd00157          81 VDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGA-IGYMECSALTQE  159 (171)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCC-eEEEEeecCCCC
Confidence            9999999998888999888776689999999999987654220         123344556666653 279999999999


Q ss_pred             ChhHHHHHHHH
Q 006490          163 QVPDVFYYAQK  173 (643)
Q Consensus       163 gi~~l~~~i~~  173 (643)
                      |+.++++.+++
T Consensus       160 gi~~l~~~i~~  170 (171)
T cd00157         160 GVKEVFEEAIR  170 (171)
T ss_pred             CHHHHHHHHhh
Confidence            99999998864

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.88  E-value=1.6e-21  Score=183.57  Aligned_cols=158  Identities=22%  Similarity=0.335  Sum_probs=128.6

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill  503 (643)
                      .||+|+|++|||||||+++|.++.+...+.||....+.. .+...+....+.+||++|++.+..+  ....+.++|++++
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~d~~i~   78 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQEDYDRL--RPLSYPDTDVILM   78 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEE-EEEECCEEEEEEEEeCCCchhhhhc--cccccCCCCEEEE
Confidence            489999999999999999999999888787887765543 4456655667889999999888776  5567899999999


Q ss_pred             EEeCCChhhHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccc-------------cHHHHHHHHHHhCCCCcEE
Q 006490          504 VYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-------------AVQDSARVTQELGIEPPIP  569 (643)
Q Consensus       504 v~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~-------------~~~~~~~~~~~~~~~~~~~  569 (643)
                      |||++++.+|+.+. .|+..+.....    +.|+++|+||+|+.....             .....+++++.++..++++
T Consensus        79 v~~~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~  154 (175)
T cd01870          79 CFSIDSPDSLENIPEKWTPEVKHFCP----NVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYME  154 (175)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCC----CCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEE
Confidence            99999999998885 47777766433    789999999999864321             1356677777777766999


Q ss_pred             eeeccC-CHHHHHHHHHHHH
Q 006490          570 VSMKSK-DLNNVFSRIIWAA  588 (643)
Q Consensus       570 vSa~~g-~i~~l~~~l~~~~  588 (643)
                      |||++| |++++|++|.+.+
T Consensus       155 ~Sa~~~~~v~~lf~~l~~~~  174 (175)
T cd01870         155 CSAKTKEGVREVFEMATRAA  174 (175)
T ss_pred             eccccCcCHHHHHHHHHHHh
Confidence            999999 9999999998765

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd01862 Rab7 Rab7 subfamily

Probab=99.88  E-value=1.1e-21  Score=184.14  Aligned_cols=161  Identities=21%  Similarity=0.268  Sum_probs=124.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEE
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~   90 (643)
                      +||+++|++|||||||+|++++..+.....++.+...  ....+....+.+.+|||||++.+...+..+++++|++|+||
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   80 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence            5899999999999999999999887555433333221  22334455677899999999988888889999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHHhcC-----CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChh
Q 006490           91 ACNQQSTLSRLSSYWLPELRRLE-----IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP  165 (643)
Q Consensus        91 d~~~~~s~~~~~~~~~~~l~~~~-----~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  165 (643)
                      |++++.+++.+. .|.+.+....     .++|+++|+||+|+......  ..+....+....+. .+++++||++|.|++
T Consensus        81 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~-~~~~~~Sa~~~~gv~  156 (172)
T cd01862          81 DVTNPKSFESLD-SWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQV--STKKAQQWCQSNGN-IPYFETSAKEAINVE  156 (172)
T ss_pred             ECCCHHHHHHHH-HHHHHHHHhcCccCCCCceEEEEEECccccccccc--CHHHHHHHHHHcCC-ceEEEEECCCCCCHH
Confidence            999999998886 4877664433     27999999999999753332  23445566666653 479999999999999


Q ss_pred             HHHHHHHHHHhC
Q 006490          166 DVFYYAQKAVLH  177 (643)
Q Consensus       166 ~l~~~i~~~~~~  177 (643)
                      ++++++.+.+..
T Consensus       157 ~l~~~i~~~~~~  168 (172)
T cd01862         157 QAFETIARKALE  168 (172)
T ss_pred             HHHHHHHHHHHh
Confidence            999999987654

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.88  E-value=9e-22  Score=184.97  Aligned_cols=156  Identities=12%  Similarity=0.102  Sum_probs=115.5

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v   89 (643)
                      +..+||+++|++|||||||++++..+.+....|+ .+....  .+....+.+.+|||||+..+...+..+++++|++|+|
T Consensus        11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~~~~~t-~~~~~~--~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v   87 (175)
T smart00177       11 NKEMRILMVGLDAAGKTTILYKLKLGESVTTIPT-IGFNVE--TVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFV   87 (175)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCCCcCCc-cccceE--EEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence            4569999999999999999999987776433333 222111  2334578899999999999988899999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhc------ccceEEEeCcccCC
Q 006490           90 YACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR------EIETCVECSATTMI  162 (643)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~~  162 (643)
                      ||++++.+++.....|...++.. ..++|++||+||+|+.+....   .    ++...++      ....++++||++|.
T Consensus        88 ~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~----~i~~~~~~~~~~~~~~~~~~~Sa~~g~  160 (175)
T smart00177       88 VDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKA---A----EITEKLGLHSIRDRNWYIQPTCATSGD  160 (175)
T ss_pred             EECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCH---H----HHHHHhCccccCCCcEEEEEeeCCCCC
Confidence            99999999998886444444332 357899999999998653211   1    1111111      11136789999999


Q ss_pred             ChhHHHHHHHHHH
Q 006490          163 QVPDVFYYAQKAV  175 (643)
Q Consensus       163 gi~~l~~~i~~~~  175 (643)
                      ||+++|+++.+.+
T Consensus       161 gv~e~~~~l~~~~  173 (175)
T smart00177      161 GLYEGLTWLSNNL  173 (175)
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999987654

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.88  E-value=7.4e-22  Score=182.52  Aligned_cols=155  Identities=12%  Similarity=0.114  Sum_probs=113.0

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEEC
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYAC   92 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~   92 (643)
                      +||+++|.+|||||||++++..+.+....|+ .+....  .+....+.+.+|||||++.+...+..+++++|++|+|||+
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~~~~pt-~g~~~~--~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~   77 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPT-IGFNVE--TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS   77 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCcccCCC-CCcceE--EEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeC
Confidence            5899999999999999999988777643333 222211  2334578899999999998888889999999999999999


Q ss_pred             CCcccHHHHHHHHHHHHHh-cCCCCcEEEEEecccCCCCCccchhhhhhhHHHH-hhc-ccceEEEeCcccCCChhHHHH
Q 006490           93 NQQSTLSRLSSYWLPELRR-LEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQ-QFR-EIETCVECSATTMIQVPDVFY  169 (643)
Q Consensus        93 ~~~~s~~~~~~~~~~~l~~-~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~Sa~~~~gi~~l~~  169 (643)
                      +++.+++.....|...+.. ...+.|++||+||+|+.+...   ..+....+.. .+. ....++++||++|.||+++|+
T Consensus        78 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~---~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~  154 (159)
T cd04150          78 NDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMS---AAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLD  154 (159)
T ss_pred             CCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCC---HHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHH
Confidence            9999999988644444433 224689999999999864311   1122222211 111 111467999999999999999


Q ss_pred             HHHH
Q 006490          170 YAQK  173 (643)
Q Consensus       170 ~i~~  173 (643)
                      ++.+
T Consensus       155 ~l~~  158 (159)
T cd04150         155 WLSN  158 (159)
T ss_pred             HHhc
Confidence            8753

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.88  E-value=1.5e-21  Score=181.51  Aligned_cols=159  Identities=22%  Similarity=0.337  Sum_probs=125.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-eeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEE
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA   91 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d   91 (643)
                      +||+++|++|||||||+++++...+...+.++... ......++...+.+.+|||||+..+......+++.+|++++|||
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d   80 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence            58999999999999999999998887665443332 22334455567889999999999998899999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHHH
Q 006490           92 CNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY  169 (643)
Q Consensus        92 ~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  169 (643)
                      ++++.+++.+.. |...+...  ..++|+++|+||+|+......  ..+....+.+.++  .+++++||++|.|++++|+
T Consensus        81 ~~~~~s~~~~~~-~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~  155 (164)
T cd04139          81 ITDMESFTATAE-FREQILRVKDDDNVPLLLVGNKCDLEDKRQV--SSEEAANLARQWG--VPYVETSAKTRQNVEKAFY  155 (164)
T ss_pred             CCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEEcccccccccc--CHHHHHHHHHHhC--CeEEEeeCCCCCCHHHHHH
Confidence            999999999886 55555443  348999999999998763222  2233445556555  3799999999999999999


Q ss_pred             HHHHHHh
Q 006490          170 YAQKAVL  176 (643)
Q Consensus       170 ~i~~~~~  176 (643)
                      .+.+.+.
T Consensus       156 ~l~~~~~  162 (164)
T cd04139         156 DLVREIR  162 (164)
T ss_pred             HHHHHHH
Confidence            9887653

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>PLN03108 Rab family protein; Provisional

Probab=99.88  E-value=1.8e-21  Score=188.33  Aligned_cols=162  Identities=20%  Similarity=0.257  Sum_probs=129.0

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEE
Q 006490           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (643)
Q Consensus        11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (643)
                      ..+||+|+|++|||||||+++|++..+.....++.+...  ....+....+.+.+|||+|.+.+...+..+++.+|++|+
T Consensus         5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vl   84 (210)
T PLN03108          5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (210)
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEE
Confidence            358999999999999999999999887665444333322  223444556789999999999888888899999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHH
Q 006490           89 TYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV  167 (643)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  167 (643)
                      |||++++.+++.+.. |...+... .++.|+++|+||+|+...+.. . .+..+.+++.++  .+++++||+++.||+++
T Consensus        85 v~D~~~~~s~~~l~~-~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~-~-~~~~~~~~~~~~--~~~~e~Sa~~~~~v~e~  159 (210)
T PLN03108         85 VYDITRRETFNHLAS-WLEDARQHANANMTIMLIGNKCDLAHRRAV-S-TEEGEQFAKEHG--LIFMEASAKTAQNVEEA  159 (210)
T ss_pred             EEECCcHHHHHHHHH-HHHHHHHhcCCCCcEEEEEECccCccccCC-C-HHHHHHHHHHcC--CEEEEEeCCCCCCHHHH
Confidence            999999999999874 88777554 357999999999999765544 2 344566666665  36999999999999999


Q ss_pred             HHHHHHHHhC
Q 006490          168 FYYAQKAVLH  177 (643)
Q Consensus       168 ~~~i~~~~~~  177 (643)
                      |+++.+.+..
T Consensus       160 f~~l~~~~~~  169 (210)
T PLN03108        160 FIKTAAKIYK  169 (210)
T ss_pred             HHHHHHHHHH
Confidence            9999887653

>cd04123 Rab21 Rab21 subfamily

Probab=99.88  E-value=1.7e-21  Score=180.68  Aligned_cols=158  Identities=19%  Similarity=0.305  Sum_probs=123.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEE
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~   90 (643)
                      +||+++|++|||||||+|+|++..+.....++.....  ....+....+.+.+|||||++.+...++.+++.+|++++||
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence            5899999999999999999999887655433332222  22333345678999999999888888889999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHHH
Q 006490           91 ACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY  169 (643)
Q Consensus        91 d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  169 (643)
                      |++++.+++.+. .|.+.++... .++|+++|+||+|+......  ..+....+.+.++  .+++++||++|.|++++++
T Consensus        81 d~~~~~s~~~~~-~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~--~~~~~~~~~~~~~--~~~~~~s~~~~~gi~~~~~  155 (162)
T cd04123          81 DITDADSFQKVK-KWIKELKQMRGNNISLVIVGNKIDLERQRVV--SKSEAEEYAKSVG--AKHFETSAKTGKGIEELFL  155 (162)
T ss_pred             ECCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECcccccccCC--CHHHHHHHHHHcC--CEEEEEeCCCCCCHHHHHH
Confidence            999999999887 4888886653 37899999999998754433  2333445555554  3689999999999999999


Q ss_pred             HHHHHH
Q 006490          170 YAQKAV  175 (643)
Q Consensus       170 ~i~~~~  175 (643)
                      ++.+.+
T Consensus       156 ~l~~~~  161 (162)
T cd04123         156 SLAKRM  161 (162)
T ss_pred             HHHHHh
Confidence            988764

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd04158 ARD1 ARD1 subfamily

Probab=99.87  E-value=1.5e-21  Score=182.42  Aligned_cols=156  Identities=17%  Similarity=0.198  Sum_probs=116.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECC
Q 006490           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACN   93 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~   93 (643)
                      ||+++|++|||||||+++|.+..+....|+ .+...  ..+...++.+.+|||||+..+...+..+++.+|++++|||++
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~~~~~T-~~~~~--~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s   77 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFMQPIPT-IGFNV--ETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSS   77 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCCCcCCc-CceeE--EEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCC
Confidence            689999999999999999999876542332 22111  134456789999999999988888889999999999999999


Q ss_pred             CcccHHHHHHHHHHHHHh-c-CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhh----cccceEEEeCcccCCChhHH
Q 006490           94 QQSTLSRLSSYWLPELRR-L-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF----REIETCVECSATTMIQVPDV  167 (643)
Q Consensus        94 ~~~s~~~~~~~~~~~l~~-~-~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~gi~~l  167 (643)
                      ++.+++++.. |+..+.+ . ..+.|++||+||+|+...  . .. +.+..+....    +....+++|||++|.||+++
T Consensus        78 ~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~--~-~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~  152 (169)
T cd04158          78 HRDRVSEAHS-ELAKLLTEKELRDALLLIFANKQDVAGA--L-SV-EEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEG  152 (169)
T ss_pred             cHHHHHHHHH-HHHHHhcChhhCCCCEEEEEeCcCcccC--C-CH-HHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHH
Confidence            9999999875 5555532 2 246899999999998643  1 22 2233332211    11125789999999999999


Q ss_pred             HHHHHHHHhC
Q 006490          168 FYYAQKAVLH  177 (643)
Q Consensus       168 ~~~i~~~~~~  177 (643)
                      |+++.+.+..
T Consensus       153 f~~l~~~~~~  162 (169)
T cd04158         153 LDWLSRQLVA  162 (169)
T ss_pred             HHHHHHHHhh
Confidence            9999887653

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd04114 Rab30 Rab30 subfamily

Probab=99.87  E-value=5.1e-21  Score=179.01  Aligned_cols=161  Identities=21%  Similarity=0.329  Sum_probs=130.7

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i  501 (643)
                      ..+||+++|++|||||||++++.++.+...+.+|.+.++....+...|....+.+||++|++.+...  +..++..+|++
T Consensus         6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--~~~~~~~~d~~   83 (169)
T cd04114           6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSI--TQSYYRSANAL   83 (169)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHH--HHHHhcCCCEE
Confidence            3489999999999999999999988776666667666666666667655567789999999887776  67789999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHH
Q 006490          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNN  579 (643)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~  579 (643)
                      ++|||++++.+++.+..|+..+......   +.|+++|+||+|+...+.. ....+.+.+..... ++++||++| |+++
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~l~~~~~~---~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~-~~~~Sa~~~~gv~~  159 (169)
T cd04114          84 ILTYDITCEESFRCLPEWLREIEQYANN---KVITILVGNKIDLAERREVSQQRAEEFSDAQDMY-YLETSAKESDNVEK  159 (169)
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhCCC---CCeEEEEEECcccccccccCHHHHHHHHHHcCCe-EEEeeCCCCCCHHH
Confidence            9999999999999999998887665432   6899999999999764443 34456666666644 899999999 9999


Q ss_pred             HHHHHHHHH
Q 006490          580 VFSRIIWAA  588 (643)
Q Consensus       580 l~~~l~~~~  588 (643)
                      +|+.|.+.+
T Consensus       160 l~~~i~~~~  168 (169)
T cd04114         160 LFLDLACRL  168 (169)
T ss_pred             HHHHHHHHh
Confidence            999998753

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04149 Arf6 Arf6 subfamily

Probab=99.87  E-value=2e-21  Score=181.30  Aligned_cols=154  Identities=19%  Similarity=0.166  Sum_probs=116.9

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i  501 (643)
                      ..+||+++|.+|||||||+++|..+.+.. +.||++.++.  .+..  ....+.+||++|++.+..+  +..++++||++
T Consensus         8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~--~~~~~~~a~~i   80 (168)
T cd04149           8 KEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPL--WRHYYTGTQGL   80 (168)
T ss_pred             CccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccceE--EEEE--CCEEEEEEECCCCHHHHHH--HHHHhccCCEE
Confidence            35899999999999999999999877653 4467665443  2332  4567889999999988777  67889999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHH-----hCCCCcEEeeeccC-
Q 006490          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQE-----LGIEPPIPVSMKSK-  575 (643)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~vSa~~g-  575 (643)
                      ++|||++++.+|+....|+..+.......  ++|+++|+||+|+... ...+++++..+.     .++ +++++||++| 
T Consensus        81 i~v~D~t~~~s~~~~~~~~~~~~~~~~~~--~~piilv~NK~Dl~~~-~~~~~i~~~~~~~~~~~~~~-~~~~~SAk~g~  156 (168)
T cd04149          81 IFVVDSADRDRIDEARQELHRIINDREMR--DALLLVFANKQDLPDA-MKPHEIQEKLGLTRIRDRNW-YVQPSCATSGD  156 (168)
T ss_pred             EEEEeCCchhhHHHHHHHHHHHhcCHhhc--CCcEEEEEECcCCccC-CCHHHHHHHcCCCccCCCcE-EEEEeeCCCCC
Confidence            99999999999998888877765432112  6899999999998652 223334333321     112 3789999999 


Q ss_pred             CHHHHHHHHHH
Q 006490          576 DLNNVFSRIIW  586 (643)
Q Consensus       576 ~i~~l~~~l~~  586 (643)
                      |++++|++|.+
T Consensus       157 gv~~~~~~l~~  167 (168)
T cd04149         157 GLYEGLTWLSS  167 (168)
T ss_pred             ChHHHHHHHhc
Confidence            99999999864

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.87  E-value=1.7e-21  Score=180.15  Aligned_cols=153  Identities=19%  Similarity=0.174  Sum_probs=113.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill  503 (643)
                      +||+++|.+|||||||++++..+.+. .+.||++.+..  .+..  ....+.+||++|++.+..+  +..++++||++++
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~~--~~~~~~l~D~~G~~~~~~~--~~~~~~~ad~~i~   73 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPL--WRHYFQNTQGLIF   73 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEE--CCEEEEEEECCCCHhHHHH--HHHHhcCCCEEEE
Confidence            48999999999999999999887776 35577665442  2332  4567889999999888777  7788999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHH----HhCCCCcEEeeeccC-CHH
Q 006490          504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQ----ELGIEPPIPVSMKSK-DLN  578 (643)
Q Consensus       504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~vSa~~g-~i~  578 (643)
                      |||++++.+|+....++..+.......  +.|+++|+||+|+.+.....+..+.+..    ..++ .++++||++| |++
T Consensus        74 v~D~~~~~s~~~~~~~~~~~~~~~~~~--~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~-~~~~~Sak~g~gv~  150 (159)
T cd04150          74 VVDSNDRERIGEAREELQRMLNEDELR--DAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNW-YIQATCATSGDGLY  150 (159)
T ss_pred             EEeCCCHHHHHHHHHHHHHHHhcHHhc--CCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCE-EEEEeeCCCCCCHH
Confidence            999999999999888877765432222  6899999999999653221122222210    0111 2578999999 999


Q ss_pred             HHHHHHHH
Q 006490          579 NVFSRIIW  586 (643)
Q Consensus       579 ~l~~~l~~  586 (643)
                      ++|++|.+
T Consensus       151 ~~~~~l~~  158 (159)
T cd04150         151 EGLDWLSN  158 (159)
T ss_pred             HHHHHHhc
Confidence            99999864

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>COG1159 Era GTPase [General function prediction only]

Probab=99.87  E-value=2.1e-21  Score=187.05  Aligned_cols=185  Identities=17%  Similarity=0.231  Sum_probs=139.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhh-----h-hccHHhhcc
Q 006490          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK-----I-LSNKEALAS  497 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~-----~-~~~~~~~~~  497 (643)
                      --|+|+|+||||||||+|+++|.+.+++++...+++..+.-+-+. +...+.++||+|-..-..     + ..+...+.+
T Consensus         7 GfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~-~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~d   85 (298)
T COG1159           7 GFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTT-DNAQIIFVDTPGIHKPKHALGELMNKAARSALKD   85 (298)
T ss_pred             EEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEc-CCceEEEEeCCCCCCcchHHHHHHHHHHHHHhcc
Confidence            469999999999999999999999999998433333445555555 466788899999432211     1 125678899


Q ss_pred             CCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccc-cHHHHHHHHHHhCCCCcEEeeeccC-
Q 006490          498 CDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-  575 (643)
Q Consensus       498 ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSa~~g-  575 (643)
                      +|+++||+|++++.. ......++.+...      +.|+++++||+|...+.. .....+.+.....+..++++||++| 
T Consensus        86 vDlilfvvd~~~~~~-~~d~~il~~lk~~------~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~  158 (298)
T COG1159          86 VDLILFVVDADEGWG-PGDEFILEQLKKT------KTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGD  158 (298)
T ss_pred             CcEEEEEEeccccCC-ccHHHHHHHHhhc------CCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccC
Confidence            999999999998644 2334444455442      689999999999988665 3566667777778888999999999 


Q ss_pred             CHHHHHHHHHHHH-hCCCCCCCCcccccchh-hhhhhhchhhH
Q 006490          576 DLNNVFSRIIWAA-EHPHLNIPETETGRNRK-RYRHLVNSSLV  616 (643)
Q Consensus       576 ~i~~l~~~l~~~~-~~~~~~~~~~~~~~~~~-~~~~~l~~~~~  616 (643)
                      |++.+.+.+.+.+ .++..++++..++.+.+ .+.+++++.+.
T Consensus       159 n~~~L~~~i~~~Lpeg~~~yp~d~itD~~~rf~~aEiiREk~~  201 (298)
T COG1159         159 NVDTLLEIIKEYLPEGPWYYPEDQITDRPERFLAAEIIREKLL  201 (298)
T ss_pred             CHHHHHHHHHHhCCCCCCcCChhhccCChHHHHHHHHHHHHHH
Confidence            9999999999976 57787888888887766 56666666553

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.87  E-value=2.2e-21  Score=183.22  Aligned_cols=166  Identities=23%  Similarity=0.375  Sum_probs=144.7

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEE
Q 006490          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~il  502 (643)
                      .+||+++|.+|||||+|..++++..|...|+||+.+.+ .+.+.++|+...+.|+||+|++.+..+  ...+++.+|+++
T Consensus         3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y-~k~~~v~~~~~~l~ilDt~g~~~~~~~--~~~~~~~~~gF~   79 (196)
T KOG0395|consen    3 EYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSY-RKELTVDGEVCMLEILDTAGQEEFSAM--RDLYIRNGDGFL   79 (196)
T ss_pred             ceEEEEECCCCCCcchheeeecccccccccCCCccccc-eEEEEECCEEEEEEEEcCCCcccChHH--HHHhhccCcEEE
Confidence            47999999999999999999999999999999999644 455556667788889999998888887  778899999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHHH
Q 006490          503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNNV  580 (643)
Q Consensus       503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l  580 (643)
                      +||+++++.||+.+..+...|.+.....  ..|+++|+||+|+...+++ .++.+.++..++++ ++++||+.+ +++++
T Consensus        80 lVysitd~~SF~~~~~l~~~I~r~~~~~--~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~-f~E~Sak~~~~v~~~  156 (196)
T KOG0395|consen   80 LVYSITDRSSFEEAKQLREQILRVKGRD--DVPIILVGNKCDLERERQVSEEEGKALARSWGCA-FIETSAKLNYNVDEV  156 (196)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhhCcC--CCCEEEEEEcccchhccccCHHHHHHHHHhcCCc-EEEeeccCCcCHHHH
Confidence            9999999999999999999995544433  6899999999999885555 77889999999998 999999999 99999


Q ss_pred             HHHHHHHHhCCCCC
Q 006490          581 FSRIIWAAEHPHLN  594 (643)
Q Consensus       581 ~~~l~~~~~~~~~~  594 (643)
                      |..|.+.+..+...
T Consensus       157 F~~L~r~~~~~~~~  170 (196)
T KOG0395|consen  157 FYELVREIRLPREG  170 (196)
T ss_pred             HHHHHHHHHhhhcc
Confidence            99999988754433

>cd00154 Rab Rab family

Probab=99.87  E-value=4.2e-21  Score=177.06  Aligned_cols=156  Identities=23%  Similarity=0.440  Sum_probs=133.6

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill  503 (643)
                      +||+++|++|||||||+|++.+..+...+.+|.+.++....+..++....+.+||++|++.+...  ....++++|++++
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--~~~~~~~~d~ii~   78 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSI--TPSYYRGAHGAIL   78 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHH--HHHHhcCCCEEEE
Confidence            48999999999999999999999988887778777777777777755677889999999887776  7788899999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCC-CccccHHHHHHHHHHhCCCCcEEeeeccC-CHHHHH
Q 006490          504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLK-PYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNVF  581 (643)
Q Consensus       504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l~  581 (643)
                      |+|++++.+++.+..|+..+......   +.|+++|+||+|+. ......+....+....+.. ++++||+++ |+++++
T Consensus        79 v~d~~~~~~~~~~~~~~~~~~~~~~~---~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~sa~~~~~i~~~~  154 (159)
T cd00154          79 VYDITNRESFENLDKWLKELKEYAPE---NIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLL-FFETSAKTGENVEELF  154 (159)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCCC---CCcEEEEEEcccccccccccHHHHHHHHHHcCCe-EEEEecCCCCCHHHHH
Confidence            99999999999999999988876532   69999999999997 3333467777888887776 999999999 999999


Q ss_pred             HHHH
Q 006490          582 SRII  585 (643)
Q Consensus       582 ~~l~  585 (643)
                      ++|.
T Consensus       155 ~~i~  158 (159)
T cd00154         155 QSLA  158 (159)
T ss_pred             HHHh
Confidence            9886

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.87  E-value=1.7e-21  Score=184.14  Aligned_cols=161  Identities=14%  Similarity=0.138  Sum_probs=117.7

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v   89 (643)
                      ++.+||+++|++|||||||++++..+.+....|+ .+....  .+...++.+.+|||||++.+...+..+++++|++|+|
T Consensus        15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T-~~~~~~--~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v   91 (182)
T PTZ00133         15 KKEVRILMVGLDAAGKTTILYKLKLGEVVTTIPT-IGFNVE--TVEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFV   91 (182)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccccCCc-cccceE--EEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence            4568999999999999999999988777543333 222221  2345678999999999998888899999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHh-cCCCCcEEEEEecccCCCCCccchhhhhhhHHHHh-hcc-cceEEEeCcccCCChhH
Q 006490           90 YACNQQSTLSRLSSYWLPELRR-LEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQ-FRE-IETCVECSATTMIQVPD  166 (643)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~-~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~Sa~~~~gi~~  166 (643)
                      ||++++.+++.....+.+.+.. ...++|++||+||+|+.....   ..+....+... +.. ...++++||++|.|+++
T Consensus        92 ~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~---~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e  168 (182)
T PTZ00133         92 VDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMS---TTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYE  168 (182)
T ss_pred             EeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCC---HHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHH
Confidence            9999999999887645544443 224789999999999865321   11111111110 111 01356899999999999


Q ss_pred             HHHHHHHHHh
Q 006490          167 VFYYAQKAVL  176 (643)
Q Consensus       167 l~~~i~~~~~  176 (643)
                      +|+++.+.+.
T Consensus       169 ~~~~l~~~i~  178 (182)
T PTZ00133        169 GLDWLSANIK  178 (182)
T ss_pred             HHHHHHHHHH
Confidence            9999987654

>cd01863 Rab18 Rab18 subfamily

Probab=99.87  E-value=2.7e-21  Score=179.38  Aligned_cols=156  Identities=21%  Similarity=0.283  Sum_probs=123.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEE
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~   90 (643)
                      +||+++|++|||||||+++|++..+.....++.+...  ....+....+.+.+|||||++.+......+++.+|++++||
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence            5899999999999999999999887665444443322  22334455688999999999988888889999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHHhcC--CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHH
Q 006490           91 ACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (643)
Q Consensus        91 d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  168 (643)
                      |++++.+++.+.. |.+.+....  .+.|+++|+||+|+.....   ..+....+....+  .+++++||++|.|+++++
T Consensus        81 d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~---~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~~~  154 (161)
T cd01863          81 DVTRRDTFTNLET-WLNELETYSTNNDIVKMLVGNKIDKENREV---TREEGLKFARKHN--MLFIETSAKTRDGVQQAF  154 (161)
T ss_pred             ECCCHHHHHhHHH-HHHHHHHhCCCCCCcEEEEEECCccccccc---CHHHHHHHHHHcC--CEEEEEecCCCCCHHHHH
Confidence            9999999999885 988887653  5799999999999973322   2233455555554  369999999999999999


Q ss_pred             HHHHHH
Q 006490          169 YYAQKA  174 (643)
Q Consensus       169 ~~i~~~  174 (643)
                      +.+.+.
T Consensus       155 ~~~~~~  160 (161)
T cd01863         155 EELVEK  160 (161)
T ss_pred             HHHHHh
Confidence            988764

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.87  E-value=3.9e-21  Score=180.67  Aligned_cols=155  Identities=21%  Similarity=0.226  Sum_probs=118.3

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i  501 (643)
                      ..+||+++|.+|||||||++++..+.+. .+.||++.++.  .+..  ....+.+||++|++.+..+  +..++++||++
T Consensus        12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~--~~~~--~~~~l~l~D~~G~~~~~~~--~~~~~~~ad~i   84 (175)
T smart00177       12 KEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE--TVTY--KNISFTVWDVGGQDKIRPL--WRHYYTNTQGL   84 (175)
T ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE--EEEE--CCEEEEEEECCCChhhHHH--HHHHhCCCCEE
Confidence            3589999999999999999999877764 35577665443  2332  3567889999999888877  77889999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCC-------CcEEeeecc
Q 006490          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE-------PPIPVSMKS  574 (643)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-------~~~~vSa~~  574 (643)
                      |+|+|++++.+++....|+..+.......  +.|+++|+||+|+.+...    ..++.+..+..       .++++||++
T Consensus        85 i~v~D~t~~~s~~~~~~~l~~~~~~~~~~--~~piilv~NK~Dl~~~~~----~~~i~~~~~~~~~~~~~~~~~~~Sa~~  158 (175)
T smart00177       85 IFVVDSNDRDRIDEAREELHRMLNEDELR--DAVILVFANKQDLPDAMK----AAEITEKLGLHSIRDRNWYIQPTCATS  158 (175)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHhhCHhhc--CCcEEEEEeCcCcccCCC----HHHHHHHhCccccCCCcEEEEEeeCCC
Confidence            99999999999999888887775432112  689999999999875321    22333333322       256899999


Q ss_pred             C-CHHHHHHHHHHHHh
Q 006490          575 K-DLNNVFSRIIWAAE  589 (643)
Q Consensus       575 g-~i~~l~~~l~~~~~  589 (643)
                      | |++++|++|.+.+.
T Consensus       159 g~gv~e~~~~l~~~~~  174 (175)
T smart00177      159 GDGLYEGLTWLSNNLK  174 (175)
T ss_pred             CCCHHHHHHHHHHHhc
Confidence            9 99999999987653

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.87  E-value=4.3e-21  Score=184.20  Aligned_cols=162  Identities=22%  Similarity=0.316  Sum_probs=127.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEEE
Q 006490          425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV  504 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv  504 (643)
                      ||+++|.+|||||||+++|++..+...+.+|+.. .....+...|....+.+||++|+..+..+  ...++..||++++|
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~D~~G~~~~~~~--~~~~~~~ad~vilv   77 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEE-MHRKEYEVGGVSLTLDILDTSGSYSFPAM--RKLSIQNSDAFALV   77 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhh-heeEEEEECCEEEEEEEEECCCchhhhHH--HHHHhhcCCEEEEE
Confidence            6899999999999999999999888777677654 34445666655567889999999888776  56788999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCc-ccc-HHHHHHHHH-HhCCCCcEEeeeccC-CHHHH
Q 006490          505 YDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPY-TMA-VQDSARVTQ-ELGIEPPIPVSMKSK-DLNNV  580 (643)
Q Consensus       505 ~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~-~~~-~~~~~~~~~-~~~~~~~~~vSa~~g-~i~~l  580 (643)
                      ||++++.+++.+..|+..+.......  ++|+++|+||+|+... ... .+...+... ..+. +++++||++| |++++
T Consensus        78 ~d~~~~~s~~~~~~~~~~i~~~~~~~--~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~-~~~~~Sa~~g~gv~~l  154 (198)
T cd04147          78 YAVDDPESFEEVERLREEILEVKEDK--FVPIVVVGNKADSLEEERQVPAKDALSTVELDWNC-GFVETSAKDNENVLEV  154 (198)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCC--CCcEEEEEEccccccccccccHHHHHHHHHhhcCC-cEEEecCCCCCCHHHH
Confidence            99999999999999988887765433  7999999999998653 222 222222322 2333 4899999999 99999


Q ss_pred             HHHHHHHHhCCC
Q 006490          581 FSRIIWAAEHPH  592 (643)
Q Consensus       581 ~~~l~~~~~~~~  592 (643)
                      |+++++.+....
T Consensus       155 ~~~l~~~~~~~~  166 (198)
T cd04147         155 FKELLRQANLPY  166 (198)
T ss_pred             HHHHHHHhhccc
Confidence            999999876333

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.87  E-value=3.7e-21  Score=181.50  Aligned_cols=155  Identities=20%  Similarity=0.221  Sum_probs=120.6

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i  501 (643)
                      ..+||+++|.+|||||||++++..+++. .+.||++.+.  ..++.  ....+.+||++|++.+..+  +..++++||++
T Consensus        16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~--~~~~~--~~~~~~i~D~~Gq~~~~~~--~~~~~~~a~~i   88 (181)
T PLN00223         16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEY--KNISFTVWDVGGQDKIRPL--WRHYFQNTQGL   88 (181)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeE--EEEEE--CCEEEEEEECCCCHHHHHH--HHHHhccCCEE
Confidence            3589999999999999999999987775 3456766443  23433  4567889999999988877  78889999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCC-------CcEEeeecc
Q 006490          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE-------PPIPVSMKS  574 (643)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-------~~~~vSa~~  574 (643)
                      |+|||++++.+++....++..+.......  +.|++||+||+|+....    ..+++.+.+++.       .++++||++
T Consensus        89 I~V~D~s~~~s~~~~~~~l~~~l~~~~~~--~~piilv~NK~Dl~~~~----~~~~~~~~l~l~~~~~~~~~~~~~Sa~~  162 (181)
T PLN00223         89 IFVVDSNDRDRVVEARDELHRMLNEDELR--DAVLLVFANKQDLPNAM----NAAEITDKLGLHSLRQRHWYIQSTCATS  162 (181)
T ss_pred             EEEEeCCcHHHHHHHHHHHHHHhcCHhhC--CCCEEEEEECCCCCCCC----CHHHHHHHhCccccCCCceEEEeccCCC
Confidence            99999999999988887776664322112  78999999999987632    234555566554       245799999


Q ss_pred             C-CHHHHHHHHHHHHh
Q 006490          575 K-DLNNVFSRIIWAAE  589 (643)
Q Consensus       575 g-~i~~l~~~l~~~~~  589 (643)
                      | |++++|++|.+.+.
T Consensus       163 g~gv~e~~~~l~~~~~  178 (181)
T PLN00223        163 GEGLYEGLDWLSNNIA  178 (181)
T ss_pred             CCCHHHHHHHHHHHHh
Confidence            9 99999999998765

>cd01893 Miro1 Miro1 subfamily

Probab=99.87  E-value=5.9e-21  Score=177.97  Aligned_cols=159  Identities=23%  Similarity=0.311  Sum_probs=121.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill  503 (643)
                      +||+++|.+|||||||+++|.++.+...++++ ...+. ......+....+.+||++|.+.+...  +..++..+|++++
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~ad~~il   76 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRV-LPEIT-IPADVTPERVPTTIVDTSSRPQDRAN--LAAEIRKANVICL   76 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccCCCc-ccceE-eeeeecCCeEEEEEEeCCCchhhhHH--HhhhcccCCEEEE
Confidence            38999999999999999999999887654333 33332 22334446678889999998776554  5667899999999


Q ss_pred             EEeCCChhhHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc---HHHHHHHHHHhC-CCCcEEeeeccC-CH
Q 006490          504 VYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA---VQDSARVTQELG-IEPPIPVSMKSK-DL  577 (643)
Q Consensus       504 v~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~---~~~~~~~~~~~~-~~~~~~vSa~~g-~i  577 (643)
                      |||++++.+|+.+. .|+..+.....    +.|+++|+||+|+.+....   .+....++..++ ..+++++||++| |+
T Consensus        77 v~d~~~~~s~~~~~~~~~~~i~~~~~----~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v  152 (166)
T cd01893          77 VYSVDRPSTLERIRTKWLPLIRRLGV----KVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINV  152 (166)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhCC----CCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCH
Confidence            99999999999875 57777766543    7899999999999765432   233444444443 336999999999 99


Q ss_pred             HHHHHHHHHHHhC
Q 006490          578 NNVFSRIIWAAEH  590 (643)
Q Consensus       578 ~~l~~~l~~~~~~  590 (643)
                      +++|+.+.+.+.+
T Consensus       153 ~~lf~~~~~~~~~  165 (166)
T cd01893         153 SEVFYYAQKAVLH  165 (166)
T ss_pred             HHHHHHHHHHhcC
Confidence            9999999988753

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.87  E-value=1.4e-21  Score=181.57  Aligned_cols=153  Identities=19%  Similarity=0.231  Sum_probs=117.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECCC
Q 006490           15 VVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQ   94 (643)
Q Consensus        15 I~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~   94 (643)
                      |+++|++|||||||+++|++..+...+.++.+...  ..+...++.+.+|||||+..+...+..+++++|++|+|||+++
T Consensus         2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~--~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~   79 (164)
T cd04162           2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS--VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSAD   79 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce--EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCC
Confidence            89999999999999999999887665444433322  2345667899999999999999999999999999999999999


Q ss_pred             cccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchh--hhhhhHHHHhhcccceEEEeCccc------CCChhH
Q 006490           95 QSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSL--EEVMGPIMQQFREIETCVECSATT------MIQVPD  166 (643)
Q Consensus        95 ~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~Sa~~------~~gi~~  166 (643)
                      +.++..... |+..+....+++|+++|+||+|+.........  ...+..+.++.+  ..++++||++      ++||.+
T Consensus        80 ~~s~~~~~~-~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~Sa~~~~s~~~~~~v~~  156 (164)
T cd04162          80 SERLPLARQ-ELHQLLQHPPDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRR--WILQGTSLDDDGSPSRMEAVKD  156 (164)
T ss_pred             HHHHHHHHH-HHHHHHhCCCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCc--eEEEEeeecCCCChhHHHHHHH
Confidence            999888874 66666544468999999999998765433010  112344444333  2577777777      999999


Q ss_pred             HHHHHH
Q 006490          167 VFYYAQ  172 (643)
Q Consensus       167 l~~~i~  172 (643)
                      +|+.++
T Consensus       157 ~~~~~~  162 (164)
T cd04162         157 LLSQLI  162 (164)
T ss_pred             HHHHHh
Confidence            999775

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.87  E-value=1e-20  Score=178.96  Aligned_cols=163  Identities=18%  Similarity=0.323  Sum_probs=132.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill  503 (643)
                      .||+|+|.+|||||||++++++..+...+.||+...+ ...+..++....+.+||++|++.+..+  ...++..+|++++
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~--~~~~~~~~~~~i~   78 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSIL--PQKYSIGIHGYIL   78 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHH--HHHHHhhCCEEEE
Confidence            5899999999999999999999988777777776544 344555545556789999999887766  6678899999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHHHH
Q 006490          504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNNVF  581 (643)
Q Consensus       504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l~  581 (643)
                      |||+++..+++.+..|+..+.+.....  +.|+++|+||+|+...+.. .+....+++.++.. ++++||++| |+.+++
T Consensus        79 v~d~~~~~~~~~~~~~~~~~~~~~~~~--~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gv~~l~  155 (180)
T cd04137          79 VYSVTSRKSFEVVKVIYDKILDMLGKE--SVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAA-FLESSARENENVEEAF  155 (180)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCe-EEEEeCCCCCCHHHHH
Confidence            999999999999999888887654333  7899999999998754333 44566777777765 899999999 999999


Q ss_pred             HHHHHHHhCCC
Q 006490          582 SRIIWAAEHPH  592 (643)
Q Consensus       582 ~~l~~~~~~~~  592 (643)
                      +++.+.+....
T Consensus       156 ~~l~~~~~~~~  166 (180)
T cd04137         156 ELLIEEIEKVE  166 (180)
T ss_pred             HHHHHHHHHhc
Confidence            99999876444

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd04129 Rho2 Rho2 subfamily

Probab=99.87  E-value=9.3e-21  Score=180.19  Aligned_cols=164  Identities=22%  Similarity=0.341  Sum_probs=130.6

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill  503 (643)
                      .||+|+|++|||||||++++..+.+...+.+|....+. ..+...+....+.+||++|++.+...  ....+..+|++++
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~~--~~~~~~~a~~~ll   78 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYV-TDCRVDGKPVQLALWDTAGQEEYERL--RPLSYSKAHVILI   78 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEE-EEEEECCEEEEEEEEECCCChhcccc--chhhcCCCCEEEE
Confidence            48999999999999999999988877666666665443 34455555566789999998877655  4557789999999


Q ss_pred             EEeCCChhhHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcc-----------ccHHHHHHHHHHhCCCCcEEee
Q 006490          504 VYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-----------MAVQDSARVTQELGIEPPIPVS  571 (643)
Q Consensus       504 v~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~-----------~~~~~~~~~~~~~~~~~~~~vS  571 (643)
                      |||+++..+|+.+. .|+..+....+    +.|+++|+||+|+....           ...+....+++.++..++++||
T Consensus        79 v~~i~~~~s~~~~~~~~~~~i~~~~~----~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~S  154 (187)
T cd04129          79 GFAVDTPDSLENVRTKWIEEVRRYCP----NVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECS  154 (187)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhCC----CCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEcc
Confidence            99999999999986 58888876544    79999999999985421           1145677888889876699999


Q ss_pred             eccC-CHHHHHHHHHHHHhCCCCC
Q 006490          572 MKSK-DLNNVFSRIIWAAEHPHLN  594 (643)
Q Consensus       572 a~~g-~i~~l~~~l~~~~~~~~~~  594 (643)
                      |++| |++++|+.+.+.+..-...
T Consensus       155 a~~~~~v~~~f~~l~~~~~~~~~~  178 (187)
T cd04129         155 ALTGEGVDDVFEAATRAALLVRKS  178 (187)
T ss_pred             CCCCCCHHHHHHHHHHHHhcccCc
Confidence            9999 9999999999887644433

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd04114 Rab30 Rab30 subfamily

Probab=99.86  E-value=6.5e-21  Score=178.27  Aligned_cols=161  Identities=19%  Similarity=0.259  Sum_probs=123.2

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEE
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il   87 (643)
                      ...+||+++|++|||||||++++++..+.....++.+...  ....+.+..+.+.+|||||+..+......+++.+|+++
T Consensus         5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   84 (169)
T cd04114           5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI   84 (169)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence            4458999999999999999999998776544333222211  22334455577999999999888888889999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhH
Q 006490           88 LTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (643)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  166 (643)
                      +|||++++.+++.+. .|.+.++... .+.|+++|+||+|+......  ..+..+.+.....  ..+++|||++|.|+++
T Consensus        85 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i--~~~~~~~~~~~~~--~~~~~~Sa~~~~gv~~  159 (169)
T cd04114          85 LTYDITCEESFRCLP-EWLREIEQYANNKVITILVGNKIDLAERREV--SQQRAEEFSDAQD--MYYLETSAKESDNVEK  159 (169)
T ss_pred             EEEECcCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECccccccccc--CHHHHHHHHHHcC--CeEEEeeCCCCCCHHH
Confidence            999999999998887 5888886644 36899999999998765443  2233344444333  4689999999999999


Q ss_pred             HHHHHHHHH
Q 006490          167 VFYYAQKAV  175 (643)
Q Consensus       167 l~~~i~~~~  175 (643)
                      +|+++.+.+
T Consensus       160 l~~~i~~~~  168 (169)
T cd04114         160 LFLDLACRL  168 (169)
T ss_pred             HHHHHHHHh
Confidence            999988754

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.86  E-value=9.2e-21  Score=179.10  Aligned_cols=155  Identities=21%  Similarity=0.207  Sum_probs=118.4

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i  501 (643)
                      ..+||+++|++|||||||++++..+.+.. +.||++..+.  .++.  ....+.+||++|++.+..+  +..+++++|++
T Consensus        16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~--~~~~~~~ad~i   88 (182)
T PTZ00133         16 KEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEY--KNLKFTMWDVGGQDKLRPL--WRHYYQNTNGL   88 (182)
T ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEE--CCEEEEEEECCCCHhHHHH--HHHHhcCCCEE
Confidence            45899999999999999999998877754 4567665443  3443  4567889999999888877  78889999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCC-------CcEEeeecc
Q 006490          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE-------PPIPVSMKS  574 (643)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-------~~~~vSa~~  574 (643)
                      |+|+|++++.++.....++..+.......  +.|+++|+||.|+.....    ..++...++..       .++++||++
T Consensus        89 I~v~D~t~~~s~~~~~~~l~~~~~~~~~~--~~piilv~NK~Dl~~~~~----~~~i~~~l~~~~~~~~~~~~~~~Sa~t  162 (182)
T PTZ00133         89 IFVVDSNDRERIGDAREELERMLSEDELR--DAVLLVFANKQDLPNAMS----TTEVTEKLGLHSVRQRNWYIQGCCATT  162 (182)
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHhCHhhc--CCCEEEEEeCCCCCCCCC----HHHHHHHhCCCcccCCcEEEEeeeCCC
Confidence            99999999999998887777664432112  689999999999865321    12333444432       256899999


Q ss_pred             C-CHHHHHHHHHHHHh
Q 006490          575 K-DLNNVFSRIIWAAE  589 (643)
Q Consensus       575 g-~i~~l~~~l~~~~~  589 (643)
                      | |++++|++|.+.+.
T Consensus       163 g~gv~e~~~~l~~~i~  178 (182)
T PTZ00133        163 AQGLYEGLDWLSANIK  178 (182)
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            9 99999999998664

>cd00876 Ras Ras family

Probab=99.86  E-value=1.3e-20  Score=174.42  Aligned_cols=157  Identities=23%  Similarity=0.378  Sum_probs=130.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEEE
Q 006490          425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV  504 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv  504 (643)
                      ||+|+|++|||||||++++++..+...+.+++.. .........+....+.+||++|++.+..+  ....++.+|++++|
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--~~~~~~~~~~~i~v   77 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIED-SYRKTIVVDGETYTLDILDTAGQEEFSAM--RDLYIRQGDGFILV   77 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhH-eEEEEEEECCEEEEEEEEECCChHHHHHH--HHHHHhcCCEEEEE
Confidence            6899999999999999999998877777777764 44455555544567789999999887776  67788999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcc-ccHHHHHHHHHHhCCCCcEEeeeccC-CHHHHHH
Q 006490          505 YDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK-DLNNVFS  582 (643)
Q Consensus       505 ~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l~~  582 (643)
                      ||++++.++.....|...+.......  +.|+++|+||+|+.... ...+.+..+...++.+ ++++||+++ |++++++
T Consensus        78 ~d~~~~~s~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~S~~~~~~i~~l~~  154 (160)
T cd00876          78 YSITDRESFEEIKGYREQILRVKDDE--DIPIVLVGNKCDLENERQVSKEEGKALAKEWGCP-FIETSAKDNINIDEVFK  154 (160)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCC--CCcEEEEEECCcccccceecHHHHHHHHHHcCCc-EEEeccCCCCCHHHHHH
Confidence            99999999999999988887765433  79999999999998733 3356777888888865 999999999 9999999


Q ss_pred             HHHHH
Q 006490          583 RIIWA  587 (643)
Q Consensus       583 ~l~~~  587 (643)
                      +|.+.
T Consensus       155 ~l~~~  159 (160)
T cd00876         155 LLVRE  159 (160)
T ss_pred             HHHhh
Confidence            99864

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd00157 Rho Rho (Ras homology) family

Probab=99.86  E-value=6.8e-21  Score=178.47  Aligned_cols=156  Identities=20%  Similarity=0.355  Sum_probs=126.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill  503 (643)
                      +||+++|++|||||||+++|++..+...+.++....+. .....++....+.+||++|++.+..+  ....++.+|++++
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~D~~g~~~~~~~--~~~~~~~~~~~i~   77 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYS-ATVTVDGKQVNLGLWDTAGQEEYDRL--RPLSYPNTDVFLI   77 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEeCCCccccccc--chhhcCCCCEEEE
Confidence            58999999999999999999999986666666655443 33455666778889999999877665  5667789999999


Q ss_pred             EEeCCChhhHHHHHH-HHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc------------HHHHHHHHHHhCCCCcEEe
Q 006490          504 VYDSSDEYSWKRTKE-LLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA------------VQDSARVTQELGIEPPIPV  570 (643)
Q Consensus       504 v~D~s~~~s~~~~~~-~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~------------~~~~~~~~~~~~~~~~~~v  570 (643)
                      |||++++.+|..... |+..+.....    +.|+++|+||+|+......            .+...+++..+++.+++++
T Consensus        78 v~d~~~~~s~~~~~~~~~~~~~~~~~----~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  153 (171)
T cd00157          78 CFSVDSPSSFENVKTKWIPEIRHYCP----NVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMEC  153 (171)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCC----CCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEe
Confidence            999999999887654 6766665543    6999999999998764421            4567778888888569999


Q ss_pred             eeccC-CHHHHHHHHHH
Q 006490          571 SMKSK-DLNNVFSRIIW  586 (643)
Q Consensus       571 Sa~~g-~i~~l~~~l~~  586 (643)
                      ||++| |++++++.|++
T Consensus       154 Sa~~~~gi~~l~~~i~~  170 (171)
T cd00157         154 SALTQEGVKEVFEEAIR  170 (171)
T ss_pred             ecCCCCCHHHHHHHHhh
Confidence            99999 99999999875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>TIGR00436 era GTP-binding protein Era

Probab=99.86  E-value=1.1e-20  Score=189.90  Aligned_cols=180  Identities=17%  Similarity=0.189  Sum_probs=128.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCC-C-CcccceEEEEEEcCCCcEEEEEEecCCchhhh-----hh-hccHHhhc
Q 006490          425 RCLLFGPQNAGKSALLNSFLERPFSENYA-P-TTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK-----KI-LSNKEALA  496 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~~~~~~~~-~-t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~-----~~-~~~~~~~~  496 (643)
                      +|+++|+||||||||+|+|++.+...+++ | ||+..  ...+... +..++.++||+|.....     .+ ..+..++.
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~--i~~i~~~-~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~   78 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNR--ISGIHTT-GASQIIFIDTPGFHEKKHSLNRLMMKEARSAIG   78 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCc--EEEEEEc-CCcEEEEEECcCCCCCcchHHHHHHHHHHHHHh
Confidence            68999999999999999999998877766 3 44442  3333334 23457889999964321     11 11456789


Q ss_pred             cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC-
Q 006490          497 SCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-  575 (643)
Q Consensus       497 ~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g-  575 (643)
                      .+|++++|+|++++.+.+  ..++..+...      +.|+++|+||+|+............++...++.+++++||++| 
T Consensus        79 ~aDvvl~VvD~~~~~~~~--~~i~~~l~~~------~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~  150 (270)
T TIGR00436        79 GVDLILFVVDSDQWNGDG--EFVLTKLQNL------KRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFKDIVPISALTGD  150 (270)
T ss_pred             hCCEEEEEEECCCCCchH--HHHHHHHHhc------CCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCCceEEEecCCCC
Confidence            999999999999876653  3344444433      7899999999999754444445556666666656999999999 


Q ss_pred             CHHHHHHHHHHHHh-CCCCCCCCcccccchh-hhhhhhchhh
Q 006490          576 DLNNVFSRIIWAAE-HPHLNIPETETGRNRK-RYRHLVNSSL  615 (643)
Q Consensus       576 ~i~~l~~~l~~~~~-~~~~~~~~~~~~~~~~-~~~~~l~~~~  615 (643)
                      |++++++.+.+.+. .+..++++..++.+.+ ...+.+++.+
T Consensus       151 gi~~L~~~l~~~l~~~~~~~~~~~~t~~~~~~~~~e~ire~~  192 (270)
T TIGR00436       151 NTSFLAAFIEVHLPEGPFRYPEDYVTDQPDRFKISEIIREKI  192 (270)
T ss_pred             CHHHHHHHHHHhCCCCCCCCCCcccCCCCHHHHHHHHHHHHH
Confidence            99999999999875 4455666666665555 4455555554

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.86  E-value=2.8e-21  Score=179.57  Aligned_cols=151  Identities=22%  Similarity=0.277  Sum_probs=119.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEEE
Q 006490          425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV  504 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv  504 (643)
                      +|+++|.+|||||||+++|.+..+...+.||.+...  ..+  +++...+.+||++|++.+..+  +..++++||++++|
T Consensus         1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~--~~i--~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~ad~ii~V   74 (164)
T cd04162           1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS--VAI--PTQDAIMELLEIGGSQNLRKY--WKRYLSGSQGLIFV   74 (164)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce--EEE--eeCCeEEEEEECCCCcchhHH--HHHHHhhCCEEEEE
Confidence            489999999999999999999887776767776432  223  335677889999999888877  77899999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHH-----HHHHHHHHhCCCCcEEeeecc-----
Q 006490          505 YDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQ-----DSARVTQELGIEPPIPVSMKS-----  574 (643)
Q Consensus       505 ~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~-----~~~~~~~~~~~~~~~~vSa~~-----  574 (643)
                      ||++++.++.....|+..+.....    ++|+++|+||+|+.......+     ....++++.++. ++++||++     
T Consensus        75 ~D~t~~~s~~~~~~~l~~~~~~~~----~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~Sa~~~~s~~  149 (164)
T cd04162          75 VDSADSERLPLARQELHQLLQHPP----DLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWI-LQGTSLDDDGSPS  149 (164)
T ss_pred             EECCCHHHHHHHHHHHHHHHhCCC----CCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceE-EEEeeecCCCChh
Confidence            999999999988888888765432    899999999999876443321     234455555655 78899888     


Q ss_pred             -C-CHHHHHHHHHH
Q 006490          575 -K-DLNNVFSRIIW  586 (643)
Q Consensus       575 -g-~i~~l~~~l~~  586 (643)
                       + |++++|+.++.
T Consensus       150 ~~~~v~~~~~~~~~  163 (164)
T cd04162         150 RMEAVKDLLSQLIN  163 (164)
T ss_pred             HHHHHHHHHHHHhc
Confidence             8 99999998763

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd04154 Arl2 Arl2 subfamily

Probab=99.86  E-value=5.5e-21  Score=179.48  Aligned_cols=157  Identities=15%  Similarity=0.142  Sum_probs=114.4

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEE
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (643)
                      .+..+||+++|++|||||||+++|++..+....+ +.+....  .+..+++.+.+|||||++.+...+..+++.+|++++
T Consensus        11 ~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~-t~g~~~~--~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   87 (173)
T cd04154          11 KEREMRILILGLDNAGKTTILKKLLGEDIDTISP-TLGFQIK--TLEYEGYKLNIWDVGGQKTLRPYWRNYFESTDALIW   87 (173)
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHccCCCCCcCC-ccccceE--EEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence            3456899999999999999999999875432222 2222111  122346889999999998888888899999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHh--cCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhh---cccceEEEeCcccCCC
Q 006490           89 TYACNQQSTLSRLSSYWLPELRR--LEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF---REIETCVECSATTMIQ  163 (643)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~--~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~~g  163 (643)
                      |||++++.+++.... |+..+..  ...++|+++|+||+|+.....   . +....+.+..   ....+++++||++|.|
T Consensus        88 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g  162 (173)
T cd04154          88 VVDSSDRLRLDDCKR-ELKELLQEERLAGATLLILANKQDLPGALS---E-EEIREALELDKISSHHWRIQPCSAVTGEG  162 (173)
T ss_pred             EEECCCHHHHHHHHH-HHHHHHhChhhcCCCEEEEEECcccccCCC---H-HHHHHHhCccccCCCceEEEeccCCCCcC
Confidence            999999999988774 5554422  235899999999999875421   1 2222222211   1123699999999999


Q ss_pred             hhHHHHHHHH
Q 006490          164 VPDVFYYAQK  173 (643)
Q Consensus       164 i~~l~~~i~~  173 (643)
                      ++++|+++..
T Consensus       163 i~~l~~~l~~  172 (173)
T cd04154         163 LLQGIDWLVD  172 (173)
T ss_pred             HHHHHHHHhc
Confidence            9999998753

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd04158 ARD1 ARD1 subfamily

Probab=99.86  E-value=9.1e-21  Score=177.19  Aligned_cols=155  Identities=19%  Similarity=0.175  Sum_probs=118.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEEE
Q 006490          425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV  504 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv  504 (643)
                      ||+++|.+|||||||+++|.+..+.. +.||++..+.  .++.  ....+.+||++|++.+...  +..+++.+|++++|
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~--~~~~--~~~~i~l~Dt~G~~~~~~~--~~~~~~~ad~ii~V   73 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE--TVEY--KNLKFTIWDVGGKHKLRPL--WKHYYLNTQAVVFV   73 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE--EEEE--CCEEEEEEECCCChhcchH--HHHHhccCCEEEEE
Confidence            58999999999999999999987653 4566654432  3333  4567889999999877666  67888999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCC-----CCcEEeeeccC-CHH
Q 006490          505 YDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGI-----EPPIPVSMKSK-DLN  578 (643)
Q Consensus       505 ~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~-----~~~~~vSa~~g-~i~  578 (643)
                      +|++++.++.....|+..+.+.....  +.|+++|+||+|+... ...++..++++..+.     ..+++|||++| |++
T Consensus        74 ~D~s~~~s~~~~~~~~~~~~~~~~~~--~~piilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~  150 (169)
T cd04158          74 VDSSHRDRVSEAHSELAKLLTEKELR--DALLLIFANKQDVAGA-LSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLY  150 (169)
T ss_pred             EeCCcHHHHHHHHHHHHHHhcChhhC--CCCEEEEEeCcCcccC-CCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHH
Confidence            99999999999999888886543222  6899999999999643 223444454432221     13778999999 999


Q ss_pred             HHHHHHHHHHh
Q 006490          579 NVFSRIIWAAE  589 (643)
Q Consensus       579 ~l~~~l~~~~~  589 (643)
                      ++|++|.+.+.
T Consensus       151 ~~f~~l~~~~~  161 (169)
T cd04158         151 EGLDWLSRQLV  161 (169)
T ss_pred             HHHHHHHHHHh
Confidence            99999998654

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.86  E-value=1.9e-20  Score=177.28  Aligned_cols=161  Identities=20%  Similarity=0.236  Sum_probs=121.6

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEc-CCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQ-PGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~-~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i  501 (643)
                      .+||+++|.+|||||||++++.+..+... .||.+.......+.. ++....+.+||++|++.+..+  +..+++.||++
T Consensus         3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~--~~~~~~~~d~i   79 (183)
T cd04152           3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPL--WKSYTRCTDGI   79 (183)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHH--HHHHhccCCEE
Confidence            47999999999999999999999887644 466554443333333 334567889999999888776  67788999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCC-----CCcEEeeeccC-
Q 006490          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGI-----EPPIPVSMKSK-  575 (643)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~-----~~~~~vSa~~g-  575 (643)
                      ++|+|++++.+++....|+..+.......  ++|+++|+||+|+.... ..+..+.+......     .+++++||++| 
T Consensus        80 i~v~D~~~~~~~~~~~~~~~~i~~~~~~~--~~p~iiv~NK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~  156 (183)
T cd04152          80 VFVVDSVDVERMEEAKTELHKITRFSENQ--GVPVLVLANKQDLPNAL-SVSEVEKLLALHELSASTPWHVQPACAIIGE  156 (183)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHhhhhcC--CCcEEEEEECcCccccC-CHHHHHHHhCccccCCCCceEEEEeecccCC
Confidence            99999999988888888888776654333  79999999999986421 12233333321111     13789999999 


Q ss_pred             CHHHHHHHHHHHHh
Q 006490          576 DLNNVFSRIIWAAE  589 (643)
Q Consensus       576 ~i~~l~~~l~~~~~  589 (643)
                      |+++++++|.+.+.
T Consensus       157 gi~~l~~~l~~~l~  170 (183)
T cd04152         157 GLQEGLEKLYEMIL  170 (183)
T ss_pred             CHHHHHHHHHHHHH
Confidence            99999999998875

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.86  E-value=4.5e-21  Score=181.13  Aligned_cols=162  Identities=25%  Similarity=0.309  Sum_probs=137.9

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-CeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (643)
Q Consensus        11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v   89 (643)
                      ..+||+++|.+|||||+|..++++..|.+.+.++.+ ..+....++++.+.+.|+||+|++++..+...+++.+|++++|
T Consensus         2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV   81 (196)
T KOG0395|consen    2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV   81 (196)
T ss_pred             CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence            468999999999999999999999999999655554 4557777888889999999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHH-HhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHH
Q 006490           90 YACNQQSTLSRLSSYWLPEL-RRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV  167 (643)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l-~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  167 (643)
                      |+++++.||+.+.. +...+ +... .++|++|||||+|+...+.+ . .+....++..++  .+++|+||+.+.+|+++
T Consensus        82 ysitd~~SF~~~~~-l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V-~-~eeg~~la~~~~--~~f~E~Sak~~~~v~~~  156 (196)
T KOG0395|consen   82 YSITDRSSFEEAKQ-LREQILRVKGRDDVPIILVGNKCDLERERQV-S-EEEGKALARSWG--CAFIETSAKLNYNVDEV  156 (196)
T ss_pred             EECCCHHHHHHHHH-HHHHHHHhhCcCCCCEEEEEEcccchhcccc-C-HHHHHHHHHhcC--CcEEEeeccCCcCHHHH
Confidence            99999999999996 55555 3333 46899999999999987766 3 444566777776  35999999999999999


Q ss_pred             HHHHHHHHhC
Q 006490          168 FYYAQKAVLH  177 (643)
Q Consensus       168 ~~~i~~~~~~  177 (643)
                      |..+.+.+..
T Consensus       157 F~~L~r~~~~  166 (196)
T KOG0395|consen  157 FYELVREIRL  166 (196)
T ss_pred             HHHHHHHHHh
Confidence            9999997755

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.86  E-value=8.3e-21  Score=182.22  Aligned_cols=161  Identities=21%  Similarity=0.257  Sum_probs=120.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEEC
Q 006490           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYAC   92 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~   92 (643)
                      ||+++|++|||||||+++|++..+...+.++..... ....+....+.+.+|||||...+......++..+|++|+|||+
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~   80 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV   80 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence            699999999999999999999988766544333222 2223334457899999999998888888999999999999999


Q ss_pred             CCcccHHHHHHHHHHHHHhcC--CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHHHH
Q 006490           93 NQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYY  170 (643)
Q Consensus        93 ~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  170 (643)
                      +++.+++.+. .|...+....  .++|+++|+||+|+......+......+.....++  .+++++||++|.|++++|++
T Consensus        81 ~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~--~~~~~~Sa~~g~gv~~l~~~  157 (198)
T cd04147          81 DDPESFEEVE-RLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWN--CGFVETSAKDNENVLEVFKE  157 (198)
T ss_pred             CCHHHHHHHH-HHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcC--CcEEEecCCCCCCHHHHHHH
Confidence            9999999987 4777665532  47999999999998653222122222221111222  36899999999999999999


Q ss_pred             HHHHHhC
Q 006490          171 AQKAVLH  177 (643)
Q Consensus       171 i~~~~~~  177 (643)
                      +.+.+..
T Consensus       158 l~~~~~~  164 (198)
T cd04147         158 LLRQANL  164 (198)
T ss_pred             HHHHhhc
Confidence            9987653

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.86  E-value=9.8e-21  Score=179.07  Aligned_cols=161  Identities=19%  Similarity=0.209  Sum_probs=124.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-CeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEE
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA   91 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d   91 (643)
                      .||+|+|++|||||||++++++..+...+.++.. ............+.+.+|||||+.++......++..+|++++|||
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   81 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYS   81 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEE
Confidence            5899999999999999999999887665444332 223333444456778999999999888888899999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHHHH
Q 006490           92 CNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYY  170 (643)
Q Consensus        92 ~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  170 (643)
                      +++..+++.+...|...++... .+.|+|+|+||+|+...+..  ..+....+...++  .+++++||++|.|+.+++++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gv~~l~~~  157 (180)
T cd04137          82 VTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQV--STEEGKELAESWG--AAFLESSARENENVEEAFEL  157 (180)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCcc--CHHHHHHHHHHcC--CeEEEEeCCCCCCHHHHHHH
Confidence            9999999999864444444432 47899999999998754333  2233455555555  36899999999999999999


Q ss_pred             HHHHHhC
Q 006490          171 AQKAVLH  177 (643)
Q Consensus       171 i~~~~~~  177 (643)
                      +.+.+..
T Consensus       158 l~~~~~~  164 (180)
T cd04137         158 LIEEIEK  164 (180)
T ss_pred             HHHHHHH
Confidence            9987653

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd04154 Arl2 Arl2 subfamily

Probab=99.86  E-value=1.1e-20  Score=177.56  Aligned_cols=156  Identities=22%  Similarity=0.277  Sum_probs=117.5

Q ss_pred             cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCC
Q 006490          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (643)
Q Consensus       420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad  499 (643)
                      ....+||+++|++|||||||+++|.+..+. .+.||.+  +....+...  ...+.+||++|++.+..+  +..+++.+|
T Consensus        11 ~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~-~~~~t~g--~~~~~~~~~--~~~l~l~D~~G~~~~~~~--~~~~~~~~d   83 (173)
T cd04154          11 KEREMRILILGLDNAGKTTILKKLLGEDID-TISPTLG--FQIKTLEYE--GYKLNIWDVGGQKTLRPY--WRNYFESTD   83 (173)
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHccCCCC-CcCCccc--cceEEEEEC--CEEEEEEECCCCHHHHHH--HHHHhCCCC
Confidence            345689999999999999999999988553 3445554  333344443  466789999999887776  677899999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHH-----hCCCCcEEeeecc
Q 006490          500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQE-----LGIEPPIPVSMKS  574 (643)
Q Consensus       500 ~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~vSa~~  574 (643)
                      ++++|+|++++.+|+....|+..+.......  +.|+++|+||+|+.... ..+....+...     .++ +++++||++
T Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~p~iiv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~  159 (173)
T cd04154          84 ALIWVVDSSDRLRLDDCKRELKELLQEERLA--GATLLILANKQDLPGAL-SEEEIREALELDKISSHHW-RIQPCSAVT  159 (173)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHhChhhc--CCCEEEEEECcccccCC-CHHHHHHHhCccccCCCce-EEEeccCCC
Confidence            9999999999999998888887775432222  79999999999997533 22333333322     122 499999999


Q ss_pred             C-CHHHHHHHHHH
Q 006490          575 K-DLNNVFSRIIW  586 (643)
Q Consensus       575 g-~i~~l~~~l~~  586 (643)
                      | |++++|+++..
T Consensus       160 g~gi~~l~~~l~~  172 (173)
T cd04154         160 GEGLLQGIDWLVD  172 (173)
T ss_pred             CcCHHHHHHHHhc
Confidence            9 99999999864

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd04151 Arl1 Arl1 subfamily

Probab=99.86  E-value=6.2e-21  Score=176.31  Aligned_cols=154  Identities=12%  Similarity=0.120  Sum_probs=112.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECC
Q 006490           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACN   93 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~   93 (643)
                      ||+|+|++|||||||++++....+....|+. +....  .+...++.+.+|||||+..+...+..+++.+|++|+|+|++
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~t~-~~~~~--~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~   77 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVTTIPTI-GFNVE--TVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDST   77 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcCcCCcc-CcCeE--EEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECC
Confidence            6999999999999999999887765433332 21111  23446788999999999988888899999999999999999


Q ss_pred             CcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCCCCCccchhhhhhhHHHHh-hc-ccceEEEeCcccCCChhHHHHH
Q 006490           94 QQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQ-FR-EIETCVECSATTMIQVPDVFYY  170 (643)
Q Consensus        94 ~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~Sa~~~~gi~~l~~~  170 (643)
                      ++.++......|...++.. ..++|+++|+||+|+.+...   ..+....+... .. ...++++|||++|.|++++|++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~---~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  154 (158)
T cd04151          78 DRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALS---EAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDW  154 (158)
T ss_pred             CHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCC---HHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHH
Confidence            9888777665555555432 24799999999999865321   11111111110 11 0125999999999999999998


Q ss_pred             HHH
Q 006490          171 AQK  173 (643)
Q Consensus       171 i~~  173 (643)
                      +.+
T Consensus       155 l~~  157 (158)
T cd04151         155 LVN  157 (158)
T ss_pred             Hhc
Confidence            864

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.86  E-value=6.5e-21  Score=180.53  Aligned_cols=160  Identities=13%  Similarity=0.181  Sum_probs=117.8

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-eCCcc-cCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDF-YPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (643)
Q Consensus        12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v   89 (643)
                      .+||+++|++|||||||++++....+....|+...... ..... ...++.+.+|||||++.+...+..+++.+|++|+|
T Consensus         3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   82 (183)
T cd04152           3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVFV   82 (183)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEEE
Confidence            58999999999999999999999887655443221211 22222 33578899999999998888889999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCCCCCccchhhhhhhHHHH--hhcc--cceEEEeCcccCCC
Q 006490           90 YACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQ--QFRE--IETCVECSATTMIQ  163 (643)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~Sa~~~~g  163 (643)
                      ||++++.+++.+.. |+..+...  ..++|+++|+||+|+.....   .++ .+.+..  ....  ..++++|||++|.|
T Consensus        83 ~D~~~~~~~~~~~~-~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~SA~~~~g  157 (183)
T cd04152          83 VDSVDVERMEEAKT-ELHKITRFSENQGVPVLVLANKQDLPNALS---VSE-VEKLLALHELSASTPWHVQPACAIIGEG  157 (183)
T ss_pred             EECCCHHHHHHHHH-HHHHHHhhhhcCCCcEEEEEECcCccccCC---HHH-HHHHhCccccCCCCceEEEEeecccCCC
Confidence            99999988888764 66555432  24799999999999864321   111 222211  1111  12478999999999


Q ss_pred             hhHHHHHHHHHHh
Q 006490          164 VPDVFYYAQKAVL  176 (643)
Q Consensus       164 i~~l~~~i~~~~~  176 (643)
                      ++++++++.+.+.
T Consensus       158 i~~l~~~l~~~l~  170 (183)
T cd04152         158 LQEGLEKLYEMIL  170 (183)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998875

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04157 Arl6 Arl6 subfamily

Probab=99.86  E-value=4.9e-21  Score=177.71  Aligned_cols=154  Identities=18%  Similarity=0.208  Sum_probs=111.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEEC
Q 006490           14 RVVVVGDRGTGKSSLIAAAATESV-PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYAC   92 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~   92 (643)
                      +|+++|++|||||||+++|++..+ ...+.++.+....  .+...++.+.+|||||.+.+...+..+++.+|++|+|+|+
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~--~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~   78 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE--SFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDS   78 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE--EEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeC
Confidence            589999999999999999998763 3333333332221  2345678899999999999988999999999999999999


Q ss_pred             CCcccHHHHHHHHHHHHHhc----CCCCcEEEEEecccCCCCCccchhhhhhhHHH-Hhhc-ccceEEEeCcccCCChhH
Q 006490           93 NQQSTLSRLSSYWLPELRRL----EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIM-QQFR-EIETCVECSATTMIQVPD  166 (643)
Q Consensus        93 ~~~~s~~~~~~~~~~~l~~~----~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~Sa~~~~gi~~  166 (643)
                      +++.++..... |+..+...    ..++|+++|+||+|+......   .+....+. .... ....++++||++|.|+++
T Consensus        79 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~---~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~  154 (162)
T cd04157          79 SDRLRLVVVKD-ELELLLNHPDIKHRRVPILFFANKMDLPDALTA---VKITQLLGLENIKDKPWHIFASNALTGEGLDE  154 (162)
T ss_pred             CcHHHHHHHHH-HHHHHHcCcccccCCCCEEEEEeCccccCCCCH---HHHHHHhCCccccCceEEEEEeeCCCCCchHH
Confidence            99988887764 65555331    247999999999998754221   11111110 0101 112489999999999999


Q ss_pred             HHHHHHH
Q 006490          167 VFYYAQK  173 (643)
Q Consensus       167 l~~~i~~  173 (643)
                      +|+++.+
T Consensus       155 ~~~~l~~  161 (162)
T cd04157         155 GVQWLQA  161 (162)
T ss_pred             HHHHHhc
Confidence            9998753

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.86  E-value=5.5e-20  Score=178.98  Aligned_cols=162  Identities=17%  Similarity=0.278  Sum_probs=135.0

Q ss_pred             cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCC
Q 006490          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (643)
Q Consensus       420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad  499 (643)
                      ....+||+++|++|||||||+++++.+.+...+.+|.+..+....+...++...+.+||++|++.+..+  +..++..+|
T Consensus         6 ~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~--~~~~~~~~~   83 (215)
T PTZ00132          6 EVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGL--RDGYYIKGQ   83 (215)
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhh--hHHHhccCC
Confidence            345689999999999999999999988888778788887776666666667788889999999888776  677888999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC-CHH
Q 006490          500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLN  578 (643)
Q Consensus       500 ~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g-~i~  578 (643)
                      ++++|||++++.+|..+..|+..+.....    +.|+++|+||+|+...... .....+++..++. ++++||++| |++
T Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~i~lv~nK~Dl~~~~~~-~~~~~~~~~~~~~-~~e~Sa~~~~~v~  157 (215)
T PTZ00132         84 CAIIMFDVTSRITYKNVPNWHRDIVRVCE----NIPIVLVGNKVDVKDRQVK-ARQITFHRKKNLQ-YYDISAKSNYNFE  157 (215)
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhCC----CCCEEEEEECccCccccCC-HHHHHHHHHcCCE-EEEEeCCCCCCHH
Confidence            99999999999999999999998876643    7999999999998653322 2334566777776 899999999 999


Q ss_pred             HHHHHHHHHHh
Q 006490          579 NVFSRIIWAAE  589 (643)
Q Consensus       579 ~l~~~l~~~~~  589 (643)
                      ++|.+|++.+.
T Consensus       158 ~~f~~ia~~l~  168 (215)
T PTZ00132        158 KPFLWLARRLT  168 (215)
T ss_pred             HHHHHHHHHHh
Confidence            99999999764

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.85  E-value=4.8e-20  Score=179.40  Aligned_cols=167  Identities=14%  Similarity=0.241  Sum_probs=130.9

Q ss_pred             CCCCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccC
Q 006490            6 GSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRA   83 (643)
Q Consensus         6 ~~~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a   83 (643)
                      +......+||+++|++|||||||+++++.+.+...+.++.+...  .....+.+.+.+.+|||+|.+.+......++..+
T Consensus         3 ~~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~   82 (215)
T PTZ00132          3 QMDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKG   82 (215)
T ss_pred             cccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccC
Confidence            45667779999999999999999999988877665544444333  2223356678999999999988888888899999


Q ss_pred             CEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCC
Q 006490           84 DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQ  163 (643)
Q Consensus        84 d~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  163 (643)
                      +++++|||+++..++..+. .|...+.....+.|+++|+||+|+.... . . .+. ..+....+  ..++++||++|.|
T Consensus        83 ~~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~i~lv~nK~Dl~~~~-~-~-~~~-~~~~~~~~--~~~~e~Sa~~~~~  155 (215)
T PTZ00132         83 QCAIIMFDVTSRITYKNVP-NWHRDIVRVCENIPIVLVGNKVDVKDRQ-V-K-ARQ-ITFHRKKN--LQYYDISAKSNYN  155 (215)
T ss_pred             CEEEEEEECcCHHHHHHHH-HHHHHHHHhCCCCCEEEEEECccCcccc-C-C-HHH-HHHHHHcC--CEEEEEeCCCCCC
Confidence            9999999999999999987 5988887766789999999999986432 1 1 121 23344433  3689999999999


Q ss_pred             hhHHHHHHHHHHhCCC
Q 006490          164 VPDVFYYAQKAVLHPT  179 (643)
Q Consensus       164 i~~l~~~i~~~~~~~~  179 (643)
                      ++++|.++++.+....
T Consensus       156 v~~~f~~ia~~l~~~p  171 (215)
T PTZ00132        156 FEKPFLWLARRLTNDP  171 (215)
T ss_pred             HHHHHHHHHHHHhhcc
Confidence            9999999999876543

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=8.6e-22  Score=168.41  Aligned_cols=162  Identities=14%  Similarity=0.244  Sum_probs=135.1

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEc--CC-------CcEEEEEEecCCchhhhhhhccHH
Q 006490          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQ--PG-------GNKKTLILQEIPEEGVKKILSNKE  493 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~--~g-------~~~~~~i~d~~g~~~~~~~~~~~~  493 (643)
                      -+|.+.+|++||||||++.++..+.|......|.+.++..+.+-.  .|       .+..+.+|||+|++++.++  +..
T Consensus         9 likfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSL--TTA   86 (219)
T KOG0081|consen    9 LIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSL--TTA   86 (219)
T ss_pred             HHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHH--HHH
Confidence            468889999999999999999999988777667776665443322  11       1234568999999999999  888


Q ss_pred             hhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeee
Q 006490          494 ALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSM  572 (643)
Q Consensus       494 ~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa  572 (643)
                      .+++|-+++++||.++..||-++++|+..+..+.=..  +.-+|+++||+||.+.+++ .+++.+++.+++++ ++++||
T Consensus        87 FfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE--~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglP-YfETSA  163 (219)
T KOG0081|consen   87 FFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCE--NPDIVLCGNKADLEDQRVVSEDQAAALADKYGLP-YFETSA  163 (219)
T ss_pred             HHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccC--CCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCC-eeeecc
Confidence            9999999999999999999999999999987655443  6789999999999987766 77899999999998 999999


Q ss_pred             ccC-CHHHHHHHHHHHHh
Q 006490          573 KSK-DLNNVFSRIIWAAE  589 (643)
Q Consensus       573 ~~g-~i~~l~~~l~~~~~  589 (643)
                      -+| |+++..+.|...+.
T Consensus       164 ~tg~Nv~kave~LldlvM  181 (219)
T KOG0081|consen  164 CTGTNVEKAVELLLDLVM  181 (219)
T ss_pred             ccCcCHHHHHHHHHHHHH
Confidence            999 99888877776553

>cd00154 Rab Rab family

Probab=99.85  E-value=9.8e-21  Score=174.60  Aligned_cols=155  Identities=23%  Similarity=0.325  Sum_probs=123.2

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEE
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~   90 (643)
                      +||+++|++|||||||+|++.+..+.....++.+...  .........+.+.+||+||...+......+++.+|++++|+
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~   80 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY   80 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence            5899999999999999999999987666333333322  22233345688999999999888888889999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHHH
Q 006490           91 ACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY  169 (643)
Q Consensus        91 d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  169 (643)
                      |++++.+++.+.. |+..+.... .+.|+++|+||+|+......  ..+....+....+  .+++++||+++.|++++++
T Consensus        81 d~~~~~~~~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~--~~~~~~sa~~~~~i~~~~~  155 (159)
T cd00154          81 DITNRESFENLDK-WLKELKEYAPENIPIILVGNKIDLEDQRQV--STEEAQQFAKENG--LLFFETSAKTGENVEELFQ  155 (159)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHhCCCCCcEEEEEEcccccccccc--cHHHHHHHHHHcC--CeEEEEecCCCCCHHHHHH
Confidence            9999999999885 988887764 57999999999999743333  2344555666543  4799999999999999999


Q ss_pred             HHH
Q 006490          170 YAQ  172 (643)
Q Consensus       170 ~i~  172 (643)
                      ++.
T Consensus       156 ~i~  158 (159)
T cd00154         156 SLA  158 (159)
T ss_pred             HHh
Confidence            875

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd00876 Ras Ras family

Probab=99.85  E-value=1.1e-20  Score=174.74  Aligned_cols=156  Identities=20%  Similarity=0.340  Sum_probs=122.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEEC
Q 006490           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYAC   92 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~   92 (643)
                      ||+|+|++|||||||++++++..+...+.++..... ....+....+.+.+||+||...+......+++.+|++++|||+
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~   80 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI   80 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence            699999999999999999999887666555444222 2233334467899999999988888888999999999999999


Q ss_pred             CCcccHHHHHHHHHHHHHhcC--CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHHHH
Q 006490           93 NQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYY  170 (643)
Q Consensus        93 ~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  170 (643)
                      +++.+++.+.. |...+....  ...|+++|+||+|+......  ..+....+..+++  .+++++||+++.|+++++++
T Consensus        81 ~~~~s~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~--~~~~~~S~~~~~~i~~l~~~  155 (160)
T cd00876          81 TDRESFEEIKG-YREQILRVKDDEDIPIVLVGNKCDLENERQV--SKEEGKALAKEWG--CPFIETSAKDNINIDEVFKL  155 (160)
T ss_pred             CCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEECCccccccee--cHHHHHHHHHHcC--CcEEEeccCCCCCHHHHHHH
Confidence            99999999885 555554432  47999999999999864433  2334555556555  47999999999999999999


Q ss_pred             HHHH
Q 006490          171 AQKA  174 (643)
Q Consensus       171 i~~~  174 (643)
                      +.+.
T Consensus       156 l~~~  159 (160)
T cd00876         156 LVRE  159 (160)
T ss_pred             HHhh
Confidence            8764

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd04157 Arl6 Arl6 subfamily

Probab=99.85  E-value=2.2e-20  Score=173.27  Aligned_cols=155  Identities=19%  Similarity=0.164  Sum_probs=112.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490          425 RCLLFGPQNAGKSALLNSFLERPF-SENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~~~-~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill  503 (643)
                      +|+++|++|||||||+++|.+..+ ...+.||.+...  ..+..  ....+.+||++|++.+..+  +..+++.+|++++
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~--~~~~~--~~~~~~l~Dt~G~~~~~~~--~~~~~~~~d~ii~   74 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNV--ESFEK--GNLSFTAFDMSGQGKYRGL--WEHYYKNIQGIIF   74 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccce--EEEEE--CCEEEEEEECCCCHhhHHH--HHHHHccCCEEEE
Confidence            589999999999999999999763 444556665432  22332  4567789999999888777  7788999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHH---hCCC-CcEEeeeccC-CHH
Q 006490          504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQE---LGIE-PPIPVSMKSK-DLN  578 (643)
Q Consensus       504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~---~~~~-~~~~vSa~~g-~i~  578 (643)
                      |+|++++.++.....|+..+.+.......++|+++|+||+|+..... .+........   .... +++++||++| |++
T Consensus        75 v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~-~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~  153 (162)
T cd04157          75 VIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALT-AVKITQLLGLENIKDKPWHIFASNALTGEGLD  153 (162)
T ss_pred             EEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCC-HHHHHHHhCCccccCceEEEEEeeCCCCCchH
Confidence            99999999988888888777553211112799999999999875322 1121111110   1111 3789999999 999


Q ss_pred             HHHHHHHH
Q 006490          579 NVFSRIIW  586 (643)
Q Consensus       579 ~l~~~l~~  586 (643)
                      ++|++|.+
T Consensus       154 ~~~~~l~~  161 (162)
T cd04157         154 EGVQWLQA  161 (162)
T ss_pred             HHHHHHhc
Confidence            99999864

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.85  E-value=5.7e-22  Score=173.00  Aligned_cols=160  Identities=18%  Similarity=0.329  Sum_probs=146.7

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i  501 (643)
                      ..+|++|+|..+|||||++.+++.+-|...|..|++.++....+.+.+......+||++|++++..+  +..++++|.+.
T Consensus        19 ~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaI--tkAyyrgaqa~   96 (246)
T KOG4252|consen   19 RAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAI--TKAYYRGAQAS   96 (246)
T ss_pred             hhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHH--HHHHhccccce
Confidence            4699999999999999999999999999999889998888877777766667778999999999999  88999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHH
Q 006490          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNN  579 (643)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~  579 (643)
                      ++||+.+|..||+....|.+.+.....    .+|.|+|-||+|+.++.+. ..+++.+++.+.+. ++.+|++.. |+..
T Consensus        97 vLVFSTTDr~SFea~~~w~~kv~~e~~----~IPtV~vqNKIDlveds~~~~~evE~lak~l~~R-lyRtSvked~NV~~  171 (246)
T KOG4252|consen   97 VLVFSTTDRYSFEATLEWYNKVQKETE----RIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKR-LYRTSVKEDFNVMH  171 (246)
T ss_pred             EEEEecccHHHHHHHHHHHHHHHHHhc----cCCeEEeeccchhhHhhhcchHHHHHHHHHhhhh-hhhhhhhhhhhhHH
Confidence            999999999999999999999988776    8999999999999987666 77889999999998 999999999 9999


Q ss_pred             HHHHHHHHH
Q 006490          580 VFSRIIWAA  588 (643)
Q Consensus       580 l~~~l~~~~  588 (643)
                      +|.+|++.+
T Consensus       172 vF~YLaeK~  180 (246)
T KOG4252|consen  172 VFAYLAEKL  180 (246)
T ss_pred             HHHHHHHHH
Confidence            999999865

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.85  E-value=1.4e-20  Score=176.72  Aligned_cols=158  Identities=18%  Similarity=0.209  Sum_probs=115.5

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v   89 (643)
                      +..+||+++|++|||||||+++++.+.+....|+ .+...  ..+..++..+.+|||||+..+...+..+++.+|++++|
T Consensus        13 ~~~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t-~~~~~--~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V   89 (174)
T cd04153          13 RKEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPT-IGSNV--EEIVYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILV   89 (174)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCCCcCCc-cccce--EEEEECCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence            3468999999999999999999998887654333 22222  23444578899999999998888888999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCCCCCccchhhhhhhHHHHh-hc-ccceEEEeCcccCCChhH
Q 006490           90 YACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQ-FR-EIETCVECSATTMIQVPD  166 (643)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~Sa~~~~gi~~  166 (643)
                      +|++++.++......|...++.. ..++|+++|+||+|+.....   .++..+.+... .. ...++++|||++|.||++
T Consensus        90 ~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~---~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e  166 (174)
T cd04153          90 IDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMT---PAEISESLGLTSIRDHTWHIQGCCALTGEGLPE  166 (174)
T ss_pred             EECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCC---HHHHHHHhCcccccCCceEEEecccCCCCCHHH
Confidence            99999988888775455444432 24799999999999865311   12211222110 00 112589999999999999


Q ss_pred             HHHHHHH
Q 006490          167 VFYYAQK  173 (643)
Q Consensus       167 l~~~i~~  173 (643)
                      +|+++.+
T Consensus       167 ~~~~l~~  173 (174)
T cd04153         167 GLDWIAS  173 (174)
T ss_pred             HHHHHhc
Confidence            9998864

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.85  E-value=2.3e-20  Score=175.37  Aligned_cols=154  Identities=21%  Similarity=0.218  Sum_probs=114.4

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEE
Q 006490          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~il  502 (643)
                      .+||+++|++|||||||++++.++.+.. +.||.+.++.  .+..  ....+.+||++|++.+...  +..+++++|+++
T Consensus        15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~--~~~~~~~~d~vi   87 (174)
T cd04153          15 EYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE--EIVY--KNIRFLMWDIGGQESLRSS--WNTYYTNTDAVI   87 (174)
T ss_pred             ccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE--EEEE--CCeEEEEEECCCCHHHHHH--HHHHhhcCCEEE
Confidence            5799999999999999999999887765 4466665443  2332  3467888999999888776  677889999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHH----HHhCCCCcEEeeeccC-CH
Q 006490          503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVT----QELGIEPPIPVSMKSK-DL  577 (643)
Q Consensus       503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~vSa~~g-~i  577 (643)
                      +|+|++++.++.....++..+.+.....  ++|+++++||+|+.......+..+.+.    +..++ ++++|||++| |+
T Consensus        88 ~V~D~s~~~~~~~~~~~l~~~~~~~~~~--~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~-~~~~~SA~~g~gi  164 (174)
T cd04153          88 LVIDSTDRERLPLTKEELYKMLAHEDLR--KAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTW-HIQGCCALTGEGL  164 (174)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhchhhc--CCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCce-EEEecccCCCCCH
Confidence            9999999988888877777665433222  689999999999865221111122221    11222 3799999999 99


Q ss_pred             HHHHHHHHH
Q 006490          578 NNVFSRIIW  586 (643)
Q Consensus       578 ~~l~~~l~~  586 (643)
                      +++|++|.+
T Consensus       165 ~e~~~~l~~  173 (174)
T cd04153         165 PEGLDWIAS  173 (174)
T ss_pred             HHHHHHHhc
Confidence            999999864

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=8.7e-21  Score=158.85  Aligned_cols=161  Identities=22%  Similarity=0.315  Sum_probs=135.4

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (643)
Q Consensus        12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v   89 (643)
                      -+|.+|+|+-|||||+|+..|+.++|..+-|-+.+...  ....+.+..+++.||||+|++++...+..++++|.+.++|
T Consensus        11 ifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalmv   90 (215)
T KOG0097|consen   11 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   90 (215)
T ss_pred             eEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeEE
Confidence            47899999999999999999999998777555444322  3346667889999999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHH
Q 006490           90 YACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (643)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  168 (643)
                      ||++.+.++..+.. |+...+.. +++..++|++||.|+...+.+ .. +...+++++-+-  .++++||++|.||++.|
T Consensus        91 yditrrstynhlss-wl~dar~ltnpnt~i~lignkadle~qrdv-~y-eeak~faeengl--~fle~saktg~nvedaf  165 (215)
T KOG0097|consen   91 YDITRRSTYNHLSS-WLTDARNLTNPNTVIFLIGNKADLESQRDV-TY-EEAKEFAEENGL--MFLEASAKTGQNVEDAF  165 (215)
T ss_pred             EEehhhhhhhhHHH-HHhhhhccCCCceEEEEecchhhhhhcccC-cH-HHHHHHHhhcCe--EEEEecccccCcHHHHH
Confidence            99999999999985 98888765 478889999999999988877 44 445667777663  58999999999999999


Q ss_pred             HHHHHHHhC
Q 006490          169 YYAQKAVLH  177 (643)
Q Consensus       169 ~~i~~~~~~  177 (643)
                      -+..+.+..
T Consensus       166 le~akkiyq  174 (215)
T KOG0097|consen  166 LETAKKIYQ  174 (215)
T ss_pred             HHHHHHHHH
Confidence            888777653

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.84  E-value=1.8e-20  Score=173.60  Aligned_cols=154  Identities=18%  Similarity=0.235  Sum_probs=110.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECC
Q 006490           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACN   93 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~   93 (643)
                      +|+++|++|||||||+++|.+..+....|+. +........ ...+.+.+|||||+..+...+..++..+|++|+|+|++
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~-~~~~~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~   78 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTV-GFNVEMLQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSS   78 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCcccccCcc-CcceEEEEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECC
Confidence            5899999999999999999999876554432 221111122 34678999999999888888888999999999999999


Q ss_pred             CcccHHHHHHHHHHHH-Hhc-CCCCcEEEEEecccCCCCCccchhhhhhhHHH-Hhhc--ccceEEEeCcccCCChhHHH
Q 006490           94 QQSTLSRLSSYWLPEL-RRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIM-QQFR--EIETCVECSATTMIQVPDVF  168 (643)
Q Consensus        94 ~~~s~~~~~~~~~~~l-~~~-~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~Sa~~~~gi~~l~  168 (643)
                      ++.++..... |+..+ +.. ..+.|+++|+||+|+.....   ..+....+. ..+.  ...++++|||++|.|++++|
T Consensus        79 ~~~~~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~  154 (160)
T cd04156          79 DEARLDESQK-ELKHILKNEHIKGVPVVLLANKQDLPGALT---AEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF  154 (160)
T ss_pred             cHHHHHHHHH-HHHHHHhchhhcCCCEEEEEECcccccCcC---HHHHHHHcCCcccCCCCcEEEEecccccCCChHHHH
Confidence            9988888875 44444 322 24899999999999864311   111111110 1111  11258999999999999999


Q ss_pred             HHHHH
Q 006490          169 YYAQK  173 (643)
Q Consensus       169 ~~i~~  173 (643)
                      +++.+
T Consensus       155 ~~i~~  159 (160)
T cd04156         155 RKLAS  159 (160)
T ss_pred             HHHhc
Confidence            98753

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=99.84  E-value=5.9e-22  Score=164.25  Aligned_cols=156  Identities=21%  Similarity=0.288  Sum_probs=129.7

Q ss_pred             EEEcCCCCCHHHHHHHHhcCCCCCC--CCCCCCCee-eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEEC
Q 006490           16 VVVGDRGTGKSSLIAAAATESVPEK--VPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYAC   92 (643)
Q Consensus        16 ~lvG~~~vGKSsL~n~l~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~   92 (643)
                      .++|++++|||+|+-|+-.+.|...  .+++.-..+ .-.+++...+++++|||+|++++.+.+..++++||+.+++||+
T Consensus         1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi   80 (192)
T KOG0083|consen    1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI   80 (192)
T ss_pred             CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence            3789999999999988877775443  333322333 4456677889999999999999999999999999999999999


Q ss_pred             CCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHHHHH
Q 006490           93 NQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYA  171 (643)
Q Consensus        93 ~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i  171 (643)
                      .++.||++.+. |+.++.++. ....+.+++||||+..++.+  ..+..+.+++.++  .|++++||++|.||+-.|..+
T Consensus        81 ankasfdn~~~-wlsei~ey~k~~v~l~llgnk~d~a~er~v--~~ddg~kla~~y~--ipfmetsaktg~nvd~af~~i  155 (192)
T KOG0083|consen   81 ANKASFDNCQA-WLSEIHEYAKEAVALMLLGNKCDLAHERAV--KRDDGEKLAEAYG--IPFMETSAKTGFNVDLAFLAI  155 (192)
T ss_pred             ccchhHHHHHH-HHHHHHHHHHhhHhHhhhccccccchhhcc--ccchHHHHHHHHC--CCceeccccccccHhHHHHHH
Confidence            99999999995 999998874 35778899999999887766  3444678888887  489999999999999999998


Q ss_pred             HHHHh
Q 006490          172 QKAVL  176 (643)
Q Consensus       172 ~~~~~  176 (643)
                      .+.+.
T Consensus       156 a~~l~  160 (192)
T KOG0083|consen  156 AEELK  160 (192)
T ss_pred             HHHHH
Confidence            88764

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.84  E-value=1.6e-20  Score=175.10  Aligned_cols=156  Identities=20%  Similarity=0.267  Sum_probs=115.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECC
Q 006490           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACN   93 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~   93 (643)
                      +|+++|++|||||||+++|.+. +...+.++.+....  .+..+++.+.+|||||...+...+..+++.+|++|+|||++
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~~--~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s   77 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTPT--KLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSS   77 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceEE--EEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECC
Confidence            4899999999999999999977 44444443443332  34456789999999999888888999999999999999999


Q ss_pred             CcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCCCCCccchhhh--hhhHHHHhhcccceEEEeCcccC------CC
Q 006490           94 QQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEE--VMGPIMQQFREIETCVECSATTM------IQ  163 (643)
Q Consensus        94 ~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~D~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~------~g  163 (643)
                      ++.+++.+.. |+..+...  ..++|+++|+||+|+..........+  .+..++++.+....+++|||++|      .|
T Consensus        78 ~~~s~~~~~~-~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g  156 (167)
T cd04161          78 DDDRVQEVKE-ILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPS  156 (167)
T ss_pred             chhHHHHHHH-HHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccC
Confidence            9999998875 76666543  24799999999999976542201111  11222222222235788999998      89


Q ss_pred             hhHHHHHHHH
Q 006490          164 VPDVFYYAQK  173 (643)
Q Consensus       164 i~~l~~~i~~  173 (643)
                      +.+.|+|+..
T Consensus       157 ~~~~~~wl~~  166 (167)
T cd04161         157 IVEGLRWLLA  166 (167)
T ss_pred             HHHHHHHHhc
Confidence            9999999864

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=99.84  E-value=8.4e-21  Score=174.36  Aligned_cols=163  Identities=23%  Similarity=0.405  Sum_probs=143.7

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEc-CCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQ-PGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~-~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i  501 (643)
                      .+|++|||+.++|||+|+..+..+.|...|.||.-+.+... +.+ .|....+-+|||+|++.|..+  +...+.++|++
T Consensus         4 ~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~-v~V~dg~~v~L~LwDTAGqedYDrl--RplsY~~tdvf   80 (198)
T KOG0393|consen    4 RIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSAN-VTVDDGKPVELGLWDTAGQEDYDRL--RPLSYPQTDVF   80 (198)
T ss_pred             eeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEE-EEecCCCEEEEeeeecCCCcccccc--cccCCCCCCEE
Confidence            57999999999999999999999999999999988777655 445 367778889999999999987  56799999999


Q ss_pred             EEEEeCCChhhHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcc-------------ccHHHHHHHHHHhCCCCc
Q 006490          502 IFVYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-------------MAVQDSARVTQELGIEPP  567 (643)
Q Consensus       502 llv~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~-------------~~~~~~~~~~~~~~~~~~  567 (643)
                      +++|++.++.||+++. +|+.++..+++    +.|+|+|++|.||..+.             ...++...+++++|...+
T Consensus        81 l~cfsv~~p~S~~nv~~kW~pEi~~~cp----~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y  156 (198)
T KOG0393|consen   81 LLCFSVVSPESFENVKSKWIPEIKHHCP----NVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKY  156 (198)
T ss_pred             EEEEEcCChhhHHHHHhhhhHHHHhhCC----CCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCccee
Confidence            9999999999999965 59999999986    89999999999998532             226788999999998779


Q ss_pred             EEeeeccC-CHHHHHHHHHHHHhCCC
Q 006490          568 IPVSMKSK-DLNNVFSRIIWAAEHPH  592 (643)
Q Consensus       568 ~~vSa~~g-~i~~l~~~l~~~~~~~~  592 (643)
                      ++|||++. |++++|+..+..+..+.
T Consensus       157 ~EcSa~tq~~v~~vF~~a~~~~l~~~  182 (198)
T KOG0393|consen  157 LECSALTQKGVKEVFDEAIRAALRPP  182 (198)
T ss_pred             eeehhhhhCCcHHHHHHHHHHHhccc
Confidence            99999999 99999999999887554

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.84  E-value=3.7e-20  Score=171.44  Aligned_cols=153  Identities=25%  Similarity=0.307  Sum_probs=113.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEEE
Q 006490          425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV  504 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv  504 (643)
                      +|+++|.+|||||||+++|.++.+... .||.+..  ...+..+ ....+.+||++|++.+...  +..++..+|++++|
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~~~~--~~~~~~~-~~~~l~i~D~~G~~~~~~~--~~~~~~~~~~iv~v   74 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTVGFN--VEMLQLE-KHLSLTVWDVGGQEKMRTV--WKCYLENTDGLVYV   74 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCcccc-cCccCcc--eEEEEeC-CceEEEEEECCCCHhHHHH--HHHHhccCCEEEEE
Confidence            589999999999999999999987643 3565533  3445544 5567889999999887776  66788999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHH-----HHHhCCCCcEEeeeccC-CHH
Q 006490          505 YDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARV-----TQELGIEPPIPVSMKSK-DLN  578 (643)
Q Consensus       505 ~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~vSa~~g-~i~  578 (643)
                      +|++++.++.....|+..+.+.....  +.|+++|+||+|+.......+....+     +...++ ++++|||++| |++
T Consensus        75 ~D~~~~~~~~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~Sa~~~~gv~  151 (160)
T cd04156          75 VDSSDEARLDESQKELKHILKNEHIK--GVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDW-YVQPCSAVTGEGLA  151 (160)
T ss_pred             EECCcHHHHHHHHHHHHHHHhchhhc--CCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcE-EEEecccccCCChH
Confidence            99999998888888887776532222  79999999999986422111111111     111122 3889999999 999


Q ss_pred             HHHHHHHH
Q 006490          579 NVFSRIIW  586 (643)
Q Consensus       579 ~l~~~l~~  586 (643)
                      ++|++|.+
T Consensus       152 ~~~~~i~~  159 (160)
T cd04156         152 EAFRKLAS  159 (160)
T ss_pred             HHHHHHhc
Confidence            99999864

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.84  E-value=5e-20  Score=188.06  Aligned_cols=204  Identities=20%  Similarity=0.210  Sum_probs=149.9

Q ss_pred             CCCCCccEEEEEcCCCCCHHHHHHHHhcCC--CCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhH-------
Q 006490            7 SSSRTGVRVVVVGDRGTGKSSLIAAAATES--VPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLN-------   77 (643)
Q Consensus         7 ~~~~~~~kI~lvG~~~vGKSsL~n~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------   77 (643)
                      ...+.++||+|+|+||||||||+|.|++.+  ++.+.||++.+ .+...+..+|+++.++||+|+.+..+..+       
T Consensus       212 ~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRD-viee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs  290 (454)
T COG0486         212 KILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRD-VIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERA  290 (454)
T ss_pred             hhhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccc-eEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHH
Confidence            456889999999999999999999999988  67777773322 27778889999999999999987666554       


Q ss_pred             -HhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEe
Q 006490           78 -EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVEC  156 (643)
Q Consensus        78 -~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (643)
                       ..+++||++++|+|.+.+.+-.+..  .+.   ....++|+++|.||+|+......    .   ..  +...-.+++.+
T Consensus       291 ~~~i~~ADlvL~v~D~~~~~~~~d~~--~~~---~~~~~~~~i~v~NK~DL~~~~~~----~---~~--~~~~~~~~i~i  356 (454)
T COG0486         291 KKAIEEADLVLFVLDASQPLDKEDLA--LIE---LLPKKKPIIVVLNKADLVSKIEL----E---SE--KLANGDAIISI  356 (454)
T ss_pred             HHHHHhCCEEEEEEeCCCCCchhhHH--HHH---hcccCCCEEEEEechhccccccc----c---hh--hccCCCceEEE
Confidence             6789999999999998874444433  222   22347999999999999875332    1   11  11111258999


Q ss_pred             CcccCCChhHHHHHHHHHHhCC-C---CCCCccccc-cchHHHHHHHHhhhhhcCCCCCCCCChHHHHHHhhhh
Q 006490          157 SATTMIQVPDVFYYAQKAVLHP-T---APLFDHDEQ-TLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKC  225 (643)
Q Consensus       157 Sa~~~~gi~~l~~~i~~~~~~~-~---~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~l~~~el~~~~~~~  225 (643)
                      ||++|.|++.|.+.+.+.+... .   .....+.++ .....+..+++......+......+..++++..+..+
T Consensus       357 Sa~t~~Gl~~L~~~i~~~~~~~~~~~~~~~i~~~Rh~~~L~~a~~~l~~a~~~~~~~~~~dl~a~dLr~A~~~L  430 (454)
T COG0486         357 SAKTGEGLDALREAIKQLFGKGLGNQEGLFLSNLRHIQLLEQAAEHLEDALQQLELGQPLDLLAEDLRLAQEAL  430 (454)
T ss_pred             EecCccCHHHHHHHHHHHHhhcccccccceeecHHHHHHHHHHHHHHHHHHhhhhccCChhhhHHHHHHHHHHH
Confidence            9999999999999998877554 1   122223333 3567777778777766665557788888888777654

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=1.3e-21  Score=167.23  Aligned_cols=160  Identities=17%  Similarity=0.254  Sum_probs=131.1

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe-e-eCCccc---------CCceeEEEEeCCCCCcchhhhHHhh
Q 006490           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-R-LPPDFY---------PDRVPVTIIDTSSSLENKGKLNEEL   80 (643)
Q Consensus        12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~-~-~~~~~~---------~~~~~~~i~Dt~G~~~~~~~~~~~~   80 (643)
                      -+|...+|++||||||++.+++.++|....-++.+.. + +...+.         ...+.+.+|||+|++++.+++..++
T Consensus         9 likfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFf   88 (219)
T KOG0081|consen    9 LIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFF   88 (219)
T ss_pred             HHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHH
Confidence            3578889999999999999999999876633333322 2 111111         2246688999999999999999999


Q ss_pred             ccCCEEEEEEECCCcccHHHHHHHHHHHHHh--cCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCc
Q 006490           81 KRADAVVLTYACNQQSTLSRLSSYWLPELRR--LEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSA  158 (643)
Q Consensus        81 ~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~--~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  158 (643)
                      ++|-+++++||+++..||.++.. |+..++.  +|.+.-||+++||+|+.+.+.+  .++....++.+++  .||+++||
T Consensus        89 RDAMGFlLiFDlT~eqSFLnvrn-WlSQL~~hAYcE~PDivlcGNK~DL~~~R~V--s~~qa~~La~kyg--lPYfETSA  163 (219)
T KOG0081|consen   89 RDAMGFLLIFDLTSEQSFLNVRN-WLSQLQTHAYCENPDIVLCGNKADLEDQRVV--SEDQAAALADKYG--LPYFETSA  163 (219)
T ss_pred             HhhccceEEEeccchHHHHHHHH-HHHHHHHhhccCCCCEEEEcCccchhhhhhh--hHHHHHHHHHHhC--CCeeeecc
Confidence            99999999999999999999996 9999965  5778889999999999987776  5566788999998  48999999


Q ss_pred             ccCCChhHHHHHHHHHHh
Q 006490          159 TTMIQVPDVFYYAQKAVL  176 (643)
Q Consensus       159 ~~~~gi~~l~~~i~~~~~  176 (643)
                      -+|.||++..+.+...++
T Consensus       164 ~tg~Nv~kave~LldlvM  181 (219)
T KOG0081|consen  164 CTGTNVEKAVELLLDLVM  181 (219)
T ss_pred             ccCcCHHHHHHHHHHHHH
Confidence            999999998887776654

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.84  E-value=5.2e-20  Score=187.92  Aligned_cols=192  Identities=19%  Similarity=0.190  Sum_probs=137.8

Q ss_pred             hhccccCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCcEEEEEEecCCchh----hhh--
Q 006490          415 KKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPEEG----VKK--  487 (643)
Q Consensus       415 ~~~~~~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~-~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~----~~~--  487 (643)
                      ++++..+.++|++|+|+||||||||+|+|++++++++++ |.|+.++....+.+.|  ..+.++||+|-.+    .+.  
T Consensus       209 ~~g~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iG  286 (454)
T COG0486         209 KQGKILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIG  286 (454)
T ss_pred             hhhhhhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHH
Confidence            445667889999999999999999999999999999998 5444445566677764  4566799999432    222  


Q ss_pred             hhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCc
Q 006490          488 ILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPP  567 (643)
Q Consensus       488 ~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~  567 (643)
                      +.++...+++||.+++|+|++++.+ +.....+. ...    .  ++|+++|.||.||..+...    ..+ +..+-.++
T Consensus       287 IeRs~~~i~~ADlvL~v~D~~~~~~-~~d~~~~~-~~~----~--~~~~i~v~NK~DL~~~~~~----~~~-~~~~~~~~  353 (454)
T COG0486         287 IERAKKAIEEADLVLFVLDASQPLD-KEDLALIE-LLP----K--KKPIIVVLNKADLVSKIEL----ESE-KLANGDAI  353 (454)
T ss_pred             HHHHHHHHHhCCEEEEEEeCCCCCc-hhhHHHHH-hcc----c--CCCEEEEEechhccccccc----chh-hccCCCce
Confidence            4568889999999999999999633 22222222 111    1  7999999999999875432    111 11111248


Q ss_pred             EEeeeccC-CHHHHHHHHHHHHhCCCCCCCCcccccchhhhhhhhchhhHHHHHHHH
Q 006490          568 IPVSMKSK-DLNNVFSRIIWAAEHPHLNIPETETGRNRKRYRHLVNSSLVFVSVGAA  623 (643)
Q Consensus       568 ~~vSa~~g-~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~  623 (643)
                      +.+||++| |++.+.+.|.+.+...  .......-.++.|+.++++++..++..+..
T Consensus       354 i~iSa~t~~Gl~~L~~~i~~~~~~~--~~~~~~~~i~~~Rh~~~L~~a~~~l~~a~~  408 (454)
T COG0486         354 ISISAKTGEGLDALREAIKQLFGKG--LGNQEGLFLSNLRHIQLLEQAAEHLEDALQ  408 (454)
T ss_pred             EEEEecCccCHHHHHHHHHHHHhhc--ccccccceeecHHHHHHHHHHHHHHHHHHh
Confidence            99999999 9999999999988644  122223344667888999988888776543

>cd00879 Sar1 Sar1 subfamily

Probab=99.84  E-value=4.4e-20  Score=176.21  Aligned_cols=158  Identities=16%  Similarity=0.264  Sum_probs=115.7

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEE
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (643)
                      ..+..||+|+|++|||||||++++.+..+....|+ .+...  ..+..+++.+.+|||||+..+...+..+++.+|++++
T Consensus        16 ~~~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T-~~~~~--~~i~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iil   92 (190)
T cd00879          16 YNKEAKILFLGLDNAGKTTLLHMLKDDRLAQHVPT-LHPTS--EELTIGNIKFKTFDLGGHEQARRLWKDYFPEVDGIVF   92 (190)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCc-cCcce--EEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            35579999999999999999999998876432332 22222  2334456889999999998887778889999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHh-c-CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhh--------------cccce
Q 006490           89 TYACNQQSTLSRLSSYWLPELRR-L-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF--------------REIET  152 (643)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~-~-~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~--------------~~~~~  152 (643)
                      |+|+++..+++.... |+..+.. . ..+.|+++|+||+|+...  + .. +.++.+....              .....
T Consensus        93 V~D~~~~~s~~~~~~-~~~~i~~~~~~~~~pvivv~NK~Dl~~~--~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (190)
T cd00879          93 LVDAADPERFQESKE-ELDSLLSDEELANVPFLILGNKIDLPGA--V-SE-EELRQALGLYGTTTGKGVSLKVSGIRPIE  167 (190)
T ss_pred             EEECCcHHHHHHHHH-HHHHHHcCccccCCCEEEEEeCCCCCCC--c-CH-HHHHHHhCcccccccccccccccCceeEE
Confidence            999999988887765 4444432 2 247999999999998642  1 12 2233333211              11125


Q ss_pred             EEEeCcccCCChhHHHHHHHHH
Q 006490          153 CVECSATTMIQVPDVFYYAQKA  174 (643)
Q Consensus       153 ~~~~Sa~~~~gi~~l~~~i~~~  174 (643)
                      +++|||++|+|++++|+++.+.
T Consensus       168 ~~~~Sa~~~~gv~e~~~~l~~~  189 (190)
T cd00879         168 VFMCSVVKRQGYGEAFRWLSQY  189 (190)
T ss_pred             EEEeEecCCCChHHHHHHHHhh
Confidence            8999999999999999998764

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.84  E-value=1e-19  Score=173.31  Aligned_cols=149  Identities=19%  Similarity=0.148  Sum_probs=121.0

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcC-----CCcEEEEEEecCCchhhhhhhccHHhhccC
Q 006490          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQP-----GGNKKTLILQEIPEEGVKKILSNKEALASC  498 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~-----g~~~~~~i~d~~g~~~~~~~~~~~~~~~~a  498 (643)
                      +||+++|.++||||||+++++++.+...+.+|++.++....+...     +....+.+||++|++.+..+  +..+++++
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l--~~~~yr~a   78 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKST--RAVFYNQV   78 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHH--HHHHhCcC
Confidence            489999999999999999999999988887888876766666553     34567789999999999887  77899999


Q ss_pred             CEEEEEEeCCChhhHHHHHHHHHHHHHhcC----------------CCCCCCcEEEEEeCCCCCCcccc-----HHHHHH
Q 006490          499 DVTIFVYDSSDEYSWKRTKELLVEVARLGE----------------DSGYGVPCLLIASKDDLKPYTMA-----VQDSAR  557 (643)
Q Consensus       499 d~illv~D~s~~~s~~~~~~~~~~i~~~~~----------------~~~~~~pvilv~NK~Dl~~~~~~-----~~~~~~  557 (643)
                      |++|+|||++++.||+.+..|+.++.....                ....+.|++||+||+|+.+++..     ......
T Consensus        79 d~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~  158 (202)
T cd04102          79 NGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGF  158 (202)
T ss_pred             CEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhh
Confidence            999999999999999999999999876421                01126899999999999765432     234557


Q ss_pred             HHHHhCCCCcEEeeeccC
Q 006490          558 VTQELGIEPPIPVSMKSK  575 (643)
Q Consensus       558 ~~~~~~~~~~~~vSa~~g  575 (643)
                      ++++.+.+ .++.+++.+
T Consensus       159 ia~~~~~~-~i~~~c~~~  175 (202)
T cd04102         159 VAEQGNAE-EINLNCTNG  175 (202)
T ss_pred             HHHhcCCc-eEEEecCCc
Confidence            78889988 788888753

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.84  E-value=4.7e-20  Score=174.73  Aligned_cols=159  Identities=13%  Similarity=0.197  Sum_probs=114.9

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v   89 (643)
                      .+.++|+++|.+|||||||++++.+..+....|+ .+.+.  ..+..+++++.+|||||+..+...+..+++.+|++++|
T Consensus        15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t-~~~~~--~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~v   91 (184)
T smart00178       15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPT-QHPTS--EELAIGNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYL   91 (184)
T ss_pred             cccCEEEEECCCCCCHHHHHHHHhcCCCcccCCc-cccce--EEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEE
Confidence            5569999999999999999999998876433232 22222  22334578899999999988888889999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHh-cCCCCcEEEEEecccCCCCCccchhhhhhhHHH--Hhh-------cccceEEEeCcc
Q 006490           90 YACNQQSTLSRLSSYWLPELRR-LEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIM--QQF-------REIETCVECSAT  159 (643)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~-~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~--~~~-------~~~~~~~~~Sa~  159 (643)
                      +|++++.++......+...++. ...++|+++|+||+|+....   ..++..+.+.  +..       .....+++|||+
T Consensus        92 vD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~---~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~  168 (184)
T smart00178       92 VDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAA---SEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVV  168 (184)
T ss_pred             EECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCC---CHHHHHHHcCCCcccccccccCCceeEEEEeecc
Confidence            9999998888877533333332 12479999999999986431   1222111110  000       012358999999


Q ss_pred             cCCChhHHHHHHHHH
Q 006490          160 TMIQVPDVFYYAQKA  174 (643)
Q Consensus       160 ~~~gi~~l~~~i~~~  174 (643)
                      +|.|++++++++.+.
T Consensus       169 ~~~g~~~~~~wl~~~  183 (184)
T smart00178      169 RRMGYGEGFKWLSQY  183 (184)
T ss_pred             cCCChHHHHHHHHhh
Confidence            999999999999764

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.83  E-value=2.9e-20  Score=167.08  Aligned_cols=147  Identities=21%  Similarity=0.323  Sum_probs=108.5

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhh------hhhccHHhh--
Q 006490          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK------KILSNKEAL--  495 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~------~~~~~~~~~--  495 (643)
                      ++|+++|.||||||||+|+|+|.+......|.++.+...-.+...  ...+.++|+||.....      .+  +..++  
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~--~~~~~lvDlPG~ysl~~~s~ee~v--~~~~l~~   76 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLG--DQQVELVDLPGIYSLSSKSEEERV--ARDYLLS   76 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEET--TEEEEEEE----SSSSSSSHHHHH--HHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEec--CceEEEEECCCcccCCCCCcHHHH--HHHHHhh
Confidence            589999999999999999999998554444655555555556655  2677789999843222      23  33444  


Q ss_pred             ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC
Q 006490          496 ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK  575 (643)
Q Consensus       496 ~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g  575 (643)
                      .+.|++++|+|+++.   +....+..++.+.      ++|+++|+||+|+..++......+.+.+.+|++ ++++||+++
T Consensus        77 ~~~D~ii~VvDa~~l---~r~l~l~~ql~e~------g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~p-vi~~sa~~~  146 (156)
T PF02421_consen   77 EKPDLIIVVVDATNL---ERNLYLTLQLLEL------GIPVVVVLNKMDEAERKGIEIDAEKLSERLGVP-VIPVSARTG  146 (156)
T ss_dssp             TSSSEEEEEEEGGGH---HHHHHHHHHHHHT------TSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS--EEEEBTTTT
T ss_pred             cCCCEEEEECCCCCH---HHHHHHHHHHHHc------CCCEEEEEeCHHHHHHcCCEECHHHHHHHhCCC-EEEEEeCCC
Confidence            689999999999884   4444555666665      899999999999987666666788899999997 999999999


Q ss_pred             -CHHHHHHHH
Q 006490          576 -DLNNVFSRI  584 (643)
Q Consensus       576 -~i~~l~~~l  584 (643)
                       |+++++++|
T Consensus       147 ~g~~~L~~~I  156 (156)
T PF02421_consen  147 EGIDELKDAI  156 (156)
T ss_dssp             BTHHHHHHHH
T ss_pred             cCHHHHHhhC
Confidence             999999875

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>cd04151 Arl1 Arl1 subfamily

Probab=99.83  E-value=1.5e-19  Score=167.07  Aligned_cols=149  Identities=23%  Similarity=0.253  Sum_probs=109.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEEE
Q 006490          425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV  504 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv  504 (643)
                      ||+++|++|||||||++++..+.+.. +.||++.+.  ..++.  ....+.+||++|++.+..+  +..+++.+|++++|
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~i~Dt~G~~~~~~~--~~~~~~~~~~ii~v   73 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNV--ETVTY--KNLKFQVWDLGGQTSIRPY--WRCYYSNTDAIIYV   73 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCe--EEEEE--CCEEEEEEECCCCHHHHHH--HHHHhcCCCEEEEE
Confidence            68999999999999999998877653 345655443  23333  3467889999999888776  77889999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCC-------CCcEEeeeccC-C
Q 006490          505 YDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGI-------EPPIPVSMKSK-D  576 (643)
Q Consensus       505 ~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~-------~~~~~vSa~~g-~  576 (643)
                      +|++++.++.....++..+.+.....  ++|+++|+||+|+......    .++.+.++.       .++++|||++| |
T Consensus        74 ~d~~~~~~~~~~~~~~~~~~~~~~~~--~~piiiv~nK~Dl~~~~~~----~~i~~~~~~~~~~~~~~~~~~~Sa~~~~g  147 (158)
T cd04151          74 VDSTDRDRLGTAKEELHAMLEEEELK--GAVLLVFANKQDMPGALSE----AEISEKLGLSELKDRTWSIFKTSAIKGEG  147 (158)
T ss_pred             EECCCHHHHHHHHHHHHHHHhchhhc--CCcEEEEEeCCCCCCCCCH----HHHHHHhCccccCCCcEEEEEeeccCCCC
Confidence            99999888776666555443322112  7899999999998753211    122222221       14899999999 9


Q ss_pred             HHHHHHHHHH
Q 006490          577 LNNVFSRIIW  586 (643)
Q Consensus       577 i~~l~~~l~~  586 (643)
                      ++++|++|.+
T Consensus       148 i~~l~~~l~~  157 (158)
T cd04151         148 LDEGMDWLVN  157 (158)
T ss_pred             HHHHHHHHhc
Confidence            9999999875

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.83  E-value=1.6e-19  Score=171.02  Aligned_cols=153  Identities=18%  Similarity=0.231  Sum_probs=114.7

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i  501 (643)
                      ..++|+++|.+|||||||++++.++.+.. +.||....  ...+..  +..++.+||++|++.+..+  +..++..+|++
T Consensus        16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~--~~~~~~--~~~~~~~~D~~G~~~~~~~--~~~~~~~ad~i   88 (184)
T smart00178       16 KHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPT--SEELAI--GNIKFTTFDLGGHQQARRL--WKDYFPEVNGI   88 (184)
T ss_pred             ccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccc--eEEEEE--CCEEEEEEECCCCHHHHHH--HHHHhCCCCEE
Confidence            34899999999999999999999987653 33554432  222333  3467788999999887776  67889999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCC--------------CCc
Q 006490          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGI--------------EPP  567 (643)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~--------------~~~  567 (643)
                      ++|+|++++.++.....++..+.+.....  ++|+++|+||+|+.... ..+   ++.+.+++              ..+
T Consensus        89 i~vvD~~~~~~~~~~~~~l~~l~~~~~~~--~~piliv~NK~Dl~~~~-~~~---~i~~~l~l~~~~~~~~~~~~~~~~i  162 (184)
T smart00178       89 VYLVDAYDKERFAESKRELDALLSDEELA--TVPFLILGNKIDAPYAA-SED---ELRYALGLTNTTGSKGKVGVRPLEV  162 (184)
T ss_pred             EEEEECCcHHHHHHHHHHHHHHHcChhhc--CCCEEEEEeCccccCCC-CHH---HHHHHcCCCcccccccccCCceeEE
Confidence            99999999998888888777765432222  78999999999986421 122   23333322              138


Q ss_pred             EEeeeccC-CHHHHHHHHHHH
Q 006490          568 IPVSMKSK-DLNNVFSRIIWA  587 (643)
Q Consensus       568 ~~vSa~~g-~i~~l~~~l~~~  587 (643)
                      ++|||++| |+++++++|.+.
T Consensus       163 ~~~Sa~~~~g~~~~~~wl~~~  183 (184)
T smart00178      163 FMCSVVRRMGYGEGFKWLSQY  183 (184)
T ss_pred             EEeecccCCChHHHHHHHHhh
Confidence            99999999 999999999764

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.83  E-value=1.1e-19  Score=168.03  Aligned_cols=153  Identities=15%  Similarity=0.204  Sum_probs=112.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECC
Q 006490           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACN   93 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~   93 (643)
                      ||+++|.+|||||||++++++..+....++ .+....  .+...+..+.+|||||...+...+..+++.+|++++|||++
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t-~~~~~~--~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~   77 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEVVTTIPT-IGFNVE--TVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSS   77 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCCCCCCCC-cCcceE--EEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECC
Confidence            699999999999999999999874332222 222221  23345688999999999988888899999999999999999


Q ss_pred             CcccHHHHHHHHHHHH-Hhc-CCCCcEEEEEecccCCCCCccchhhhhhhHHHHh--hcccceEEEeCcccCCChhHHHH
Q 006490           94 QQSTLSRLSSYWLPEL-RRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQ--FREIETCVECSATTMIQVPDVFY  169 (643)
Q Consensus        94 ~~~s~~~~~~~~~~~l-~~~-~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~gi~~l~~  169 (643)
                      ++.++..... |+..+ +.. ..+.|+++|+||+|+......   ++....+...  .....+++++||++|.|++++|+
T Consensus        78 ~~~~~~~~~~-~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~  153 (158)
T cd00878          78 DRERIEEAKE-ELHKLLNEEELKGVPLLIFANKQDLPGALSV---SELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLD  153 (158)
T ss_pred             CHHHHHHHHH-HHHHHHhCcccCCCcEEEEeeccCCccccCH---HHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHH
Confidence            9999998875 44444 322 348999999999998764321   1211221111  11223699999999999999999


Q ss_pred             HHHH
Q 006490          170 YAQK  173 (643)
Q Consensus       170 ~i~~  173 (643)
                      ++..
T Consensus       154 ~l~~  157 (158)
T cd00878         154 WLLQ  157 (158)
T ss_pred             HHhh
Confidence            8764

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.83  E-value=2.5e-20  Score=167.47  Aligned_cols=147  Identities=16%  Similarity=0.194  Sum_probs=105.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCC-CCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchh------hhHHh--hccC
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATES-VPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKG------KLNEE--LKRA   83 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~------~~~~~--~~~a   83 (643)
                      ++|+++|+||||||||||+|++.+ .+.++|+++.. ...+.+...+..+.++|+||......      ....+  ...+
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~-~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~   79 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVE-KKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKP   79 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSE-EEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCee-eeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCC
Confidence            589999999999999999999998 34557875433 35556666678999999999754322      22233  3689


Q ss_pred             CEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCC
Q 006490           84 DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQ  163 (643)
Q Consensus        84 d~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  163 (643)
                      |++++|+|+++.+.-   . ++..++.+.  ++|+++|.||+|....... ..  ....+.+.++  .+++++||+++.|
T Consensus        80 D~ii~VvDa~~l~r~---l-~l~~ql~e~--g~P~vvvlN~~D~a~~~g~-~i--d~~~Ls~~Lg--~pvi~~sa~~~~g  148 (156)
T PF02421_consen   80 DLIIVVVDATNLERN---L-YLTLQLLEL--GIPVVVVLNKMDEAERKGI-EI--DAEKLSERLG--VPVIPVSARTGEG  148 (156)
T ss_dssp             SEEEEEEEGGGHHHH---H-HHHHHHHHT--TSSEEEEEETHHHHHHTTE-EE---HHHHHHHHT--S-EEEEBTTTTBT
T ss_pred             CEEEEECCCCCHHHH---H-HHHHHHHHc--CCCEEEEEeCHHHHHHcCC-EE--CHHHHHHHhC--CCEEEEEeCCCcC
Confidence            999999998774322   2 356666666  8999999999998765544 22  2456677776  4799999999999


Q ss_pred             hhHHHHHH
Q 006490          164 VPDVFYYA  171 (643)
Q Consensus       164 i~~l~~~i  171 (643)
                      +++|++.|
T Consensus       149 ~~~L~~~I  156 (156)
T PF02421_consen  149 IDELKDAI  156 (156)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHhhC
Confidence            99998864

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.83  E-value=7.7e-20  Score=174.16  Aligned_cols=148  Identities=22%  Similarity=0.233  Sum_probs=113.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcc-----cCCceeEEEEeCCCCCcchhhhHHhhccCCE
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDF-----YPDRVPVTIIDTSSSLENKGKLNEELKRADA   85 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~   85 (643)
                      +||+++|++|||||||+++++++.|...+.++.+...  ....+     ....+.+.||||+|++.+......+++++|+
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~   80 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG   80 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence            5899999999999999999999998777555444221  11222     2356789999999999999999999999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHhc--------------------CCCCcEEEEEecccCCCCCccchhhh---hhhH
Q 006490           86 VVLTYACNQQSTLSRLSSYWLPELRRL--------------------EIKVPIIVAGCKLDLRGDHNATSLEE---VMGP  142 (643)
Q Consensus        86 il~v~d~~~~~s~~~~~~~~~~~l~~~--------------------~~~~pvilv~NK~D~~~~~~~~~~~~---~~~~  142 (643)
                      +|+|||++++.+++++. .|++.+...                    ..+.|++|||||+|+...+.. ....   ....
T Consensus        81 iIlVyDvtn~~Sf~~l~-~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~-~~~~~~~~~~~  158 (202)
T cd04102          81 IILVHDLTNRKSSQNLQ-RWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKES-SGNLVLTARGF  158 (202)
T ss_pred             EEEEEECcChHHHHHHH-HHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhccc-chHHHhhHhhh
Confidence            99999999999999997 699998652                    246899999999999765433 2221   2345


Q ss_pred             HHHhhcccceEEEeCcccCCCh
Q 006490          143 IMQQFREIETCVECSATTMIQV  164 (643)
Q Consensus       143 ~~~~~~~~~~~~~~Sa~~~~gi  164 (643)
                      ++++++.  +.++.++.+...+
T Consensus       159 ia~~~~~--~~i~~~c~~~~~~  178 (202)
T cd04102         159 VAEQGNA--EEINLNCTNGRLL  178 (202)
T ss_pred             HHHhcCC--ceEEEecCCcccc
Confidence            6677763  5777887765443

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.83  E-value=5.9e-20  Score=171.42  Aligned_cols=153  Identities=15%  Similarity=0.145  Sum_probs=108.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCC------CCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEE
Q 006490           14 RVVVVGDRGTGKSSLIAAAATESVPE------KVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il   87 (643)
                      +|+|+|++|||||||+++|++.....      .+.++.+.  ....+..++..+.+|||||+..+...+..+++.+|+++
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v   78 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGL--NIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAII   78 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCcccc--ceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEE
Confidence            58999999999999999998753210      11111111  11223345789999999999988888889999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhh----c-ccceEEEeCccc
Q 006490           88 LTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF----R-EIETCVECSATT  160 (643)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~Sa~~  160 (643)
                      +|+|++++.+++.... |+..+.+.  ..++|+++|+||+|+.....   ..+ ...+....    + ...+++++||++
T Consensus        79 ~vvd~~~~~~~~~~~~-~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~  153 (167)
T cd04160          79 YVIDSTDRERFEESKS-ALEKVLRNEALEGVPLLILANKQDLPDALS---VEE-IKEVFQDKAEEIGRRDCLVLPVSALE  153 (167)
T ss_pred             EEEECchHHHHHHHHH-HHHHHHhChhhcCCCEEEEEEccccccCCC---HHH-HHHHhccccccccCCceEEEEeeCCC
Confidence            9999999888888765 44444322  24799999999999865421   112 22222221    1 112699999999


Q ss_pred             CCChhHHHHHHHH
Q 006490          161 MIQVPDVFYYAQK  173 (643)
Q Consensus       161 ~~gi~~l~~~i~~  173 (643)
                      |.|++++++++.+
T Consensus       154 g~gv~e~~~~l~~  166 (167)
T cd04160         154 GTGVREGIEWLVE  166 (167)
T ss_pred             CcCHHHHHHHHhc
Confidence            9999999998864

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.83  E-value=8.2e-20  Score=170.29  Aligned_cols=153  Identities=23%  Similarity=0.238  Sum_probs=116.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEEE
Q 006490          425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV  504 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv  504 (643)
                      +|+++|.+|||||||+++|.+. +...+.||.+..  ...+..  ....+.+||++|++.+..+  +..+++.||++++|
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~--~~~~~~--~~~~~~i~D~~G~~~~~~~--~~~~~~~a~~ii~V   73 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT--PTKLRL--DKYEVCIFDLGGGANFRGI--WVNYYAEAHGLVFV   73 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce--EEEEEE--CCEEEEEEECCCcHHHHHH--HHHHHcCCCEEEEE
Confidence            4899999999999999999987 555566776643  233443  3467889999999888877  78899999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHH-----HHHHHHhCCC-CcEEeeeccC---
Q 006490          505 YDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDS-----ARVTQELGIE-PPIPVSMKSK---  575 (643)
Q Consensus       505 ~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~-----~~~~~~~~~~-~~~~vSa~~g---  575 (643)
                      ||++++.+++....|+..+.......  ++|+++|+||+|+.......+..     +.++++.+.. ++++|||++|   
T Consensus        74 ~D~s~~~s~~~~~~~l~~l~~~~~~~--~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~  151 (167)
T cd04161          74 VDSSDDDRVQEVKEILRELLQHPRVS--GKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGK  151 (167)
T ss_pred             EECCchhHHHHHHHHHHHHHcCcccc--CCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCC
Confidence            99999999999999998887653322  78999999999997644222222     2233223332 4778999995   


Q ss_pred             ----CHHHHHHHHHH
Q 006490          576 ----DLNNVFSRIIW  586 (643)
Q Consensus       576 ----~i~~l~~~l~~  586 (643)
                          |+.+.|+||.+
T Consensus       152 ~~~~g~~~~~~wl~~  166 (167)
T cd04161         152 KIDPSIVEGLRWLLA  166 (167)
T ss_pred             ccccCHHHHHHHHhc
Confidence                69999999865

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd00879 Sar1 Sar1 subfamily

Probab=99.83  E-value=2.2e-19  Score=171.41  Aligned_cols=156  Identities=20%  Similarity=0.234  Sum_probs=117.4

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i  501 (643)
                      +.+||+++|++|||||||++++.+..+. .+.||.+...  ..+...  ...+.+||++|++.+..+  +..+++++|++
T Consensus        18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~--~~i~~~--~~~~~l~D~~G~~~~~~~--~~~~~~~ad~i   90 (190)
T cd00879          18 KEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTS--EELTIG--NIKFKTFDLGGHEQARRL--WKDYFPEVDGI   90 (190)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcce--EEEEEC--CEEEEEEECCCCHHHHHH--HHHHhccCCEE
Confidence            4579999999999999999999998764 3445655432  233444  356778999999887766  67788999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhC--------------C-CC
Q 006490          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELG--------------I-EP  566 (643)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~--------------~-~~  566 (643)
                      ++|+|+++..+++....++..+.+.....  +.|+++|+||+|+... ...+..+.+.....              . .+
T Consensus        91 ilV~D~~~~~s~~~~~~~~~~i~~~~~~~--~~pvivv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (190)
T cd00879          91 VFLVDAADPERFQESKEELDSLLSDEELA--NVPFLILGNKIDLPGA-VSEEELRQALGLYGTTTGKGVSLKVSGIRPIE  167 (190)
T ss_pred             EEEEECCcHHHHHHHHHHHHHHHcCcccc--CCCEEEEEeCCCCCCC-cCHHHHHHHhCcccccccccccccccCceeEE
Confidence            99999999988888888888776543322  7999999999998642 22334444433211              1 14


Q ss_pred             cEEeeeccC-CHHHHHHHHHHH
Q 006490          567 PIPVSMKSK-DLNNVFSRIIWA  587 (643)
Q Consensus       567 ~~~vSa~~g-~i~~l~~~l~~~  587 (643)
                      +++|||++| |++++|++|.+.
T Consensus       168 ~~~~Sa~~~~gv~e~~~~l~~~  189 (190)
T cd00879         168 VFMCSVVKRQGYGEAFRWLSQY  189 (190)
T ss_pred             EEEeEecCCCChHHHHHHHHhh
Confidence            799999999 999999999764

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>PRK15494 era GTPase Era; Provisional

Probab=99.83  E-value=3.4e-19  Score=183.93  Aligned_cols=182  Identities=17%  Similarity=0.221  Sum_probs=127.8

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-C-CcccceEEEEEEcCCCcEEEEEEecCCchh-hhhh----h-ccH
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-P-TTGEQYAVNVVDQPGGNKKTLILQEIPEEG-VKKI----L-SNK  492 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~-~-t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~-~~~~----~-~~~  492 (643)
                      ...++|+++|+||||||||+|+|++..+..+++ + ||+ +.....+..+  ..++.+|||+|... +..+    . ...
T Consensus        50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr-~~~~~~~~~~--~~qi~~~DTpG~~~~~~~l~~~~~r~~~  126 (339)
T PRK15494         50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTR-SIITGIITLK--DTQVILYDTPGIFEPKGSLEKAMVRCAW  126 (339)
T ss_pred             cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCcc-CcEEEEEEeC--CeEEEEEECCCcCCCcccHHHHHHHHHH
Confidence            345799999999999999999999998876655 3 333 3333445554  24678899999742 2221    1 133


Q ss_pred             HhhccCCEEEEEEeCCChhhHHHH-HHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhC-CCCcEEe
Q 006490          493 EALASCDVTIFVYDSSDEYSWKRT-KELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELG-IEPPIPV  570 (643)
Q Consensus       493 ~~~~~ad~illv~D~s~~~s~~~~-~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~v  570 (643)
                      .++..||++++|+|+++.  +... ..|+..+...      +.|+++|+||+|+...  ......+++...+ ..+++++
T Consensus       127 ~~l~~aDvil~VvD~~~s--~~~~~~~il~~l~~~------~~p~IlViNKiDl~~~--~~~~~~~~l~~~~~~~~i~~i  196 (339)
T PRK15494        127 SSLHSADLVLLIIDSLKS--FDDITHNILDKLRSL------NIVPIFLLNKIDIESK--YLNDIKAFLTENHPDSLLFPI  196 (339)
T ss_pred             HHhhhCCEEEEEEECCCC--CCHHHHHHHHHHHhc------CCCEEEEEEhhcCccc--cHHHHHHHHHhcCCCcEEEEE
Confidence            567899999999998764  3333 3455555443      6788899999998653  2233444444443 3458999


Q ss_pred             eeccC-CHHHHHHHHHHHH-hCCCCCCCCcccccchh-hhhhhhchhh
Q 006490          571 SMKSK-DLNNVFSRIIWAA-EHPHLNIPETETGRNRK-RYRHLVNSSL  615 (643)
Q Consensus       571 Sa~~g-~i~~l~~~l~~~~-~~~~~~~~~~~~~~~~~-~~~~~l~~~~  615 (643)
                      ||++| |+++++++|.+.+ .++..++++..++.+.+ ...+++++.+
T Consensus       197 SAktg~gv~eL~~~L~~~l~~~~~~~~~~~~td~~~~~~~~eiiRe~~  244 (339)
T PRK15494        197 SALSGKNIDGLLEYITSKAKISPWLYAEDDITDLPMRFIAAEITREQL  244 (339)
T ss_pred             eccCccCHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence            99999 9999999999966 57788888888887766 4566666655

>COG1159 Era GTPase [General function prediction only]

Probab=99.83  E-value=2e-19  Score=173.44  Aligned_cols=180  Identities=18%  Similarity=0.228  Sum_probs=127.3

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCCCCCeeeCCcccCCceeEEEEeCCCCCcchh--------hhHHhh
Q 006490           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEK--VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKG--------KLNEEL   80 (643)
Q Consensus        11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~~   80 (643)
                      +.-.|+|+|+||||||||+|++++.+....  .+. ++..++.+.+..++..+.++||||+.....        .....+
T Consensus         5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~Q-TTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl   83 (298)
T COG1159           5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQ-TTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSAL   83 (298)
T ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcc-hhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHh
Confidence            334699999999999999999999995433  333 122226666777788999999999875432        223678


Q ss_pred             ccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCccc
Q 006490           81 KRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATT  160 (643)
Q Consensus        81 ~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  160 (643)
                      .++|+++||+|++...+..+  ..+++.++..  +.|+++++||+|.......  .....+.+...+. +...+++||++
T Consensus        84 ~dvDlilfvvd~~~~~~~~d--~~il~~lk~~--~~pvil~iNKID~~~~~~~--l~~~~~~~~~~~~-f~~ivpiSA~~  156 (298)
T COG1159          84 KDVDLILFVVDADEGWGPGD--EFILEQLKKT--KTPVILVVNKIDKVKPKTV--LLKLIAFLKKLLP-FKEIVPISALK  156 (298)
T ss_pred             ccCcEEEEEEeccccCCccH--HHHHHHHhhc--CCCeEEEEEccccCCcHHH--HHHHHHHHHhhCC-cceEEEeeccc
Confidence            99999999999887544433  2466777663  7899999999998876432  1233333434433 44799999999


Q ss_pred             CCChhHHHHHHHHHHhCCCCCCCccccccchHHHHHHHH
Q 006490          161 MIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALK  199 (643)
Q Consensus       161 ~~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~  199 (643)
                      |.|++.|.+.+...+ .+.+++|+.+.....+....+.+
T Consensus       157 g~n~~~L~~~i~~~L-peg~~~yp~d~itD~~~rf~~aE  194 (298)
T COG1159         157 GDNVDTLLEIIKEYL-PEGPWYYPEDQITDRPERFLAAE  194 (298)
T ss_pred             cCCHHHHHHHHHHhC-CCCCCcCChhhccCChHHHHHHH
Confidence            999999998776654 45566677766665555544443

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.82  E-value=2.7e-19  Score=165.31  Aligned_cols=153  Identities=24%  Similarity=0.238  Sum_probs=113.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEEE
Q 006490          425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV  504 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv  504 (643)
                      ||+++|.+|||||||++++++.... .+.+|.+...  ..+..  ....+.+||++|++.+..+  +...++.+|++++|
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~~-~~~~t~~~~~--~~~~~--~~~~~~i~D~~G~~~~~~~--~~~~~~~~~~~i~v   73 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEVV-TTIPTIGFNV--ETVEY--KNVSFTVWDVGGQDKIRPL--WKHYYENTNGIIFV   73 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCcCcce--EEEEE--CCEEEEEEECCCChhhHHH--HHHHhccCCEEEEE
Confidence            6899999999999999999998733 3334544332  33333  3457788999999888777  67788999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHH---hCCCCcEEeeeccC-CHHHH
Q 006490          505 YDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQE---LGIEPPIPVSMKSK-DLNNV  580 (643)
Q Consensus       505 ~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~vSa~~g-~i~~l  580 (643)
                      +|++++.++.....++..+.......  +.|+++|+||+|+.......+....+...   ....+++++||++| |++++
T Consensus        74 ~D~~~~~~~~~~~~~~~~~~~~~~~~--~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~  151 (158)
T cd00878          74 VDSSDRERIEEAKEELHKLLNEEELK--GVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEG  151 (158)
T ss_pred             EECCCHHHHHHHHHHHHHHHhCcccC--CCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHH
Confidence            99999999998888888776644333  79999999999987643222222222111   11125899999999 99999


Q ss_pred             HHHHHH
Q 006490          581 FSRIIW  586 (643)
Q Consensus       581 ~~~l~~  586 (643)
                      |++|..
T Consensus       152 ~~~l~~  157 (158)
T cd00878         152 LDWLLQ  157 (158)
T ss_pred             HHHHhh
Confidence            999875

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>PRK15494 era GTPase Era; Provisional

Probab=99.82  E-value=2e-19  Score=185.63  Aligned_cols=173  Identities=20%  Similarity=0.238  Sum_probs=118.1

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcc-hhhh-------HHh
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLEN-KGKL-------NEE   79 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~-~~~~-------~~~   79 (643)
                      .+.++|+|+|+||||||||+|+|++..+....+. ..+|+  ....+..++..+.+|||||+.+. ....       ..+
T Consensus        50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k-~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~  128 (339)
T PRK15494         50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPK-VQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSS  128 (339)
T ss_pred             cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCC-CCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHH
Confidence            4456999999999999999999999886432221 22222  22344556778999999998532 1111       135


Q ss_pred             hccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcc
Q 006490           80 LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT  159 (643)
Q Consensus        80 ~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  159 (643)
                      +.++|++|+|+|..+  ++......|++.++..  +.|+++|+||+|+...    ...+ +............++++||+
T Consensus       129 l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~--~~p~IlViNKiDl~~~----~~~~-~~~~l~~~~~~~~i~~iSAk  199 (339)
T PRK15494        129 LHSADLVLLIIDSLK--SFDDITHNILDKLRSL--NIVPIFLLNKIDIESK----YLND-IKAFLTENHPDSLLFPISAL  199 (339)
T ss_pred             hhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc--CCCEEEEEEhhcCccc----cHHH-HHHHHHhcCCCcEEEEEecc
Confidence            789999999999554  4555544577777765  6788999999998642    1222 23333333222468999999


Q ss_pred             cCCChhHHHHHHHHHHhCCCCCCCccccccchHH
Q 006490          160 TMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPR  193 (643)
Q Consensus       160 ~~~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~  193 (643)
                      +|.|++++++++...+. +.+++|+.+.....+.
T Consensus       200 tg~gv~eL~~~L~~~l~-~~~~~~~~~~~td~~~  232 (339)
T PRK15494        200 SGKNIDGLLEYITSKAK-ISPWLYAEDDITDLPM  232 (339)
T ss_pred             CccCHHHHHHHHHHhCC-CCCCCCCCCCCCCCCH
Confidence            99999999999987665 4556776666554433

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.82  E-value=7.8e-21  Score=165.95  Aligned_cols=164  Identities=16%  Similarity=0.235  Sum_probs=140.6

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCE
Q 006490            8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADA   85 (643)
Q Consensus         8 ~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~   85 (643)
                      .....+|++|+|..+|||||++++++.+-|..++..+.+...  ....+..+.+++.+|||+|++++...+..++++|.+
T Consensus        16 d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa   95 (246)
T KOG4252|consen   16 DYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQA   95 (246)
T ss_pred             hhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccc
Confidence            345568999999999999999999999988888776655544  334556678889999999999999999999999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChh
Q 006490           86 VVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP  165 (643)
Q Consensus        86 il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  165 (643)
                      .++||+.+++.||+...+ |.+.+...+..+|.++|-||+|+.++..+  ....++.+++.+..  .++.+|++...||.
T Consensus        96 ~vLVFSTTDr~SFea~~~-w~~kv~~e~~~IPtV~vqNKIDlveds~~--~~~evE~lak~l~~--RlyRtSvked~NV~  170 (246)
T KOG4252|consen   96 SVLVFSTTDRYSFEATLE-WYNKVQKETERIPTVFVQNKIDLVEDSQM--DKGEVEGLAKKLHK--RLYRTSVKEDFNVM  170 (246)
T ss_pred             eEEEEecccHHHHHHHHH-HHHHHHHHhccCCeEEeeccchhhHhhhc--chHHHHHHHHHhhh--hhhhhhhhhhhhhH
Confidence            999999999999999985 99999988889999999999999987665  44556777777653  58999999999999


Q ss_pred             HHHHHHHHHHh
Q 006490          166 DVFYYAQKAVL  176 (643)
Q Consensus       166 ~l~~~i~~~~~  176 (643)
                      .+|..++..+.
T Consensus       171 ~vF~YLaeK~~  181 (246)
T KOG4252|consen  171 HVFAYLAEKLT  181 (246)
T ss_pred             HHHHHHHHHHH
Confidence            99998887754

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.82  E-value=2e-19  Score=167.78  Aligned_cols=153  Identities=25%  Similarity=0.358  Sum_probs=111.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCC------CCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccC
Q 006490          425 RCLLFGPQNAGKSALLNSFLERPFS------ENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASC  498 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~~~~------~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~a  498 (643)
                      +|+++|++|||||||+++|.+....      ..+.+|....+  ..+..+  ...+.+||++|++.+..+  +...+..+
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~l~Dt~G~~~~~~~--~~~~~~~~   74 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI--GTIEVG--NARLKFWDLGGQESLRSL--WDKYYAEC   74 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce--EEEEEC--CEEEEEEECCCChhhHHH--HHHHhCCC
Confidence            5899999999999999999874322      11223444333  233333  467788999999888776  67789999


Q ss_pred             CEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHH----hCC--CCcEEeee
Q 006490          499 DVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQE----LGI--EPPIPVSM  572 (643)
Q Consensus       499 d~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~----~~~--~~~~~vSa  572 (643)
                      |++++|+|++++.++.....++..+.+.....  ++|+++|+||+|+.... .......+.+.    .+.  .+++++||
T Consensus        75 ~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~--~~p~ilv~NK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  151 (167)
T cd04160          75 HAIIYVIDSTDRERFEESKSALEKVLRNEALE--GVPLLILANKQDLPDAL-SVEEIKEVFQDKAEEIGRRDCLVLPVSA  151 (167)
T ss_pred             CEEEEEEECchHHHHHHHHHHHHHHHhChhhc--CCCEEEEEEccccccCC-CHHHHHHHhccccccccCCceEEEEeeC
Confidence            99999999999988888888887776543222  79999999999986532 22233333322    121  15899999


Q ss_pred             ccC-CHHHHHHHHHH
Q 006490          573 KSK-DLNNVFSRIIW  586 (643)
Q Consensus       573 ~~g-~i~~l~~~l~~  586 (643)
                      ++| |+++++++|.+
T Consensus       152 ~~g~gv~e~~~~l~~  166 (167)
T cd04160         152 LEGTGVREGIEWLVE  166 (167)
T ss_pred             CCCcCHHHHHHHHhc
Confidence            999 99999999864

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>TIGR00436 era GTP-binding protein Era

Probab=99.82  E-value=4.3e-19  Score=178.40  Aligned_cols=167  Identities=17%  Similarity=0.174  Sum_probs=115.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCC--CCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchh--------hhHHhhccC
Q 006490           14 RVVVVGDRGTGKSSLIAAAATESVP--EKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKG--------KLNEELKRA   83 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~~~~a   83 (643)
                      +|+|+|+||||||||+|+|++..+.  ...++++.. ........++..+.+|||||+.....        ....+++++
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~-~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~a   80 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRN-RISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGV   80 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccC-cEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhC
Confidence            6999999999999999999998753  334443222 12233334556799999999864311        123568899


Q ss_pred             CEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCC
Q 006490           84 DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQ  163 (643)
Q Consensus        84 d~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  163 (643)
                      |++++|+|+++..+.+   ..+...+...  ++|+++|+||+|+.....   .......+....+ ..+++++||++|.|
T Consensus        81 Dvvl~VvD~~~~~~~~---~~i~~~l~~~--~~p~ilV~NK~Dl~~~~~---~~~~~~~~~~~~~-~~~v~~iSA~~g~g  151 (270)
T TIGR00436        81 DLILFVVDSDQWNGDG---EFVLTKLQNL--KRPVVLTRNKLDNKFKDK---LLPLIDKYAILED-FKDIVPISALTGDN  151 (270)
T ss_pred             CEEEEEEECCCCCchH---HHHHHHHHhc--CCCEEEEEECeeCCCHHH---HHHHHHHHHhhcC-CCceEEEecCCCCC
Confidence            9999999999876664   2466666665  799999999999864221   1222333333332 33689999999999


Q ss_pred             hhHHHHHHHHHHhCCCCCCCccccccch
Q 006490          164 VPDVFYYAQKAVLHPTAPLFDHDEQTLK  191 (643)
Q Consensus       164 i~~l~~~i~~~~~~~~~~~~~~~~~~~~  191 (643)
                      ++++++.+.+.+. +.++.|+.+.....
T Consensus       152 i~~L~~~l~~~l~-~~~~~~~~~~~t~~  178 (270)
T TIGR00436       152 TSFLAAFIEVHLP-EGPFRYPEDYVTDQ  178 (270)
T ss_pred             HHHHHHHHHHhCC-CCCCCCCCcccCCC
Confidence            9999999887753 44455665544433

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.82  E-value=3e-19  Score=166.86  Aligned_cols=154  Identities=20%  Similarity=0.179  Sum_probs=104.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCCCCeeeCCcccCCceeEEEEeCCCCCcchh---------hhHHhhccC
Q 006490           14 RVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKG---------KLNEELKRA   83 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~---------~~~~~~~~a   83 (643)
                      +|+++|++|||||||+|+|++..+... .+.+... .....+..+++.+.+|||||+.....         ........+
T Consensus         2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~   80 (168)
T cd01897           2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKS-LFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLR   80 (168)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccc-eeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhcc
Confidence            699999999999999999999876322 2221111 11122334568999999999842110         011112336


Q ss_pred             CEEEEEEECCCcccH--HHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccC
Q 006490           84 DAVVLTYACNQQSTL--SRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM  161 (643)
Q Consensus        84 d~il~v~d~~~~~s~--~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  161 (643)
                      |++|+|+|++++.++  +... .|.+.++....++|+++|+||+|+...... .  + ...+.. .+. .++++|||++|
T Consensus        81 d~~l~v~d~~~~~~~~~~~~~-~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~-~--~-~~~~~~-~~~-~~~~~~Sa~~~  153 (168)
T cd01897          81 AAVLFLFDPSETCGYSLEEQL-SLFEEIKPLFKNKPVIVVLNKIDLLTFEDL-S--E-IEEEEE-LEG-EEVLKISTLTE  153 (168)
T ss_pred             CcEEEEEeCCcccccchHHHH-HHHHHHHhhcCcCCeEEEEEccccCchhhH-H--H-HHHhhh-hcc-CceEEEEeccc
Confidence            899999999987653  4444 478888665558999999999999754332 1  1 223322 222 36899999999


Q ss_pred             CChhHHHHHHHHHH
Q 006490          162 IQVPDVFYYAQKAV  175 (643)
Q Consensus       162 ~gi~~l~~~i~~~~  175 (643)
                      .|++++++++.+.+
T Consensus       154 ~gi~~l~~~l~~~~  167 (168)
T cd01897         154 EGVDEVKNKACELL  167 (168)
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999988765

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.82  E-value=1.1e-19  Score=164.71  Aligned_cols=134  Identities=18%  Similarity=0.220  Sum_probs=98.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCch-----hhhhhhccHHhhccCC
Q 006490          425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE-----GVKKILSNKEALASCD  499 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~-----~~~~~~~~~~~~~~ad  499 (643)
                      ||+++|++|||||||+|+|.+..+.  +.+|...++       . .    .+||++|..     .+..+   ...+++||
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~~~-------~-~----~~iDt~G~~~~~~~~~~~~---~~~~~~ad   64 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAVEY-------N-D----GAIDTPGEYVENRRLYSAL---IVTAADAD   64 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCccc--cccceeEEE-------c-C----eeecCchhhhhhHHHHHHH---HHHhhcCC
Confidence            7999999999999999999988752  333433222       2 1    357888862     22222   24589999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC-CHH
Q 006490          500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLN  578 (643)
Q Consensus       500 ~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g-~i~  578 (643)
                      ++++|||++++.++.. ..|...+         ..|+++|+||+|+.+.....+..+++++..+..+++++||++| |++
T Consensus        65 ~vilv~d~~~~~s~~~-~~~~~~~---------~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  134 (142)
T TIGR02528        65 VIALVQSATDPESRFP-PGFASIF---------VKPVIGLVTKIDLAEADVDIERAKELLETAGAEPIFEISSVDEQGLE  134 (142)
T ss_pred             EEEEEecCCCCCcCCC-hhHHHhc---------cCCeEEEEEeeccCCcccCHHHHHHHHHHcCCCcEEEEecCCCCCHH
Confidence            9999999999988654 3343221         4599999999999754334556677788888766999999999 999


Q ss_pred             HHHHHHH
Q 006490          579 NVFSRII  585 (643)
Q Consensus       579 ~l~~~l~  585 (643)
                      ++|+++.
T Consensus       135 ~l~~~l~  141 (142)
T TIGR02528       135 ALVDYLN  141 (142)
T ss_pred             HHHHHHh
Confidence            9999874

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.81  E-value=3e-19  Score=164.71  Aligned_cols=154  Identities=17%  Similarity=0.224  Sum_probs=111.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECCC
Q 006490           15 VVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQ   94 (643)
Q Consensus        15 I~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~   94 (643)
                      |+|+|++|||||||+|+|.+..+.....++.+....  .+..+++.+.+|||||...+...+..+++.+|++++|+|+++
T Consensus         2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~   79 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR--KVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAAD   79 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE--EEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCC
Confidence            899999999999999999999877664443332222  233345889999999999888888999999999999999999


Q ss_pred             cccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCCCCCccchhhhhhhHHHH-h-hcccceEEEeCcccCCChhHHHHHH
Q 006490           95 QSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQ-Q-FREIETCVECSATTMIQVPDVFYYA  171 (643)
Q Consensus        95 ~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~Sa~~~~gi~~l~~~i  171 (643)
                      ..++......+...+... ..++|+++|+||+|+......   .+....+.. . .....+++++||++|.|++++++++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  156 (159)
T cd04159          80 RTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSV---DELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWL  156 (159)
T ss_pred             HHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCH---HHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHH
Confidence            888887764333333321 247899999999998654221   111111110 0 1111368999999999999999988


Q ss_pred             HH
Q 006490          172 QK  173 (643)
Q Consensus       172 ~~  173 (643)
                      .+
T Consensus       157 ~~  158 (159)
T cd04159         157 IK  158 (159)
T ss_pred             hh
Confidence            64

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.81  E-value=7.4e-19  Score=162.09  Aligned_cols=153  Identities=21%  Similarity=0.266  Sum_probs=115.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEEEE
Q 006490          426 CLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVY  505 (643)
Q Consensus       426 i~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv~  505 (643)
                      |+|+|++|||||||+|+|.+.++...+.||.+..+.  .++.+  ...+.+||++|++.+..+  +..++..+|++++|+
T Consensus         2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~--~~~~~~~~d~ii~v~   75 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR--KVTKG--NVTLKVWDLGGQPRFRSM--WERYCRGVNAIVYVV   75 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE--EEEEC--CEEEEEEECCCCHhHHHH--HHHHHhcCCEEEEEE
Confidence            799999999999999999999988877777765543  23333  367889999999888776  678899999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHH-Hh-C-CCCcEEeeeccC-CHHHHH
Q 006490          506 DSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQ-EL-G-IEPPIPVSMKSK-DLNNVF  581 (643)
Q Consensus       506 D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~-~~-~-~~~~~~vSa~~g-~i~~l~  581 (643)
                      |++++.++.....++..+.......  ++|+++|+||+|+.......+....+.. .. . ..+++++||++| |+++++
T Consensus        76 d~~~~~~~~~~~~~~~~~~~~~~~~--~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  153 (159)
T cd04159          76 DAADRTALEAAKNELHDLLEKPSLE--GIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVL  153 (159)
T ss_pred             ECCCHHHHHHHHHHHHHHHcChhhc--CCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCChHHHH
Confidence            9999888888777777665432222  7899999999998764322222212110 00 1 124799999999 999999


Q ss_pred             HHHHH
Q 006490          582 SRIIW  586 (643)
Q Consensus       582 ~~l~~  586 (643)
                      ++|.+
T Consensus       154 ~~l~~  158 (159)
T cd04159         154 DWLIK  158 (159)
T ss_pred             HHHhh
Confidence            99865

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.81  E-value=5.8e-19  Score=182.33  Aligned_cols=157  Identities=23%  Similarity=0.247  Sum_probs=111.7

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchh------hhhhhccHHh
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG------VKKILSNKEA  494 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~------~~~~~~~~~~  494 (643)
                      ...++|+|+|.||||||||+|+|++.+......+.++.+.....+.++++ ..+.+|||+|...      .+.+.++...
T Consensus       187 ~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~tle~  265 (351)
T TIGR03156       187 ADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRATLEE  265 (351)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHHHHH
Confidence            35689999999999999999999998754333343333455666777633 4678899999621      1223335567


Q ss_pred             hccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeecc
Q 006490          495 LASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKS  574 (643)
Q Consensus       495 ~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~  574 (643)
                      +.+||++++|+|++++.+++....|...+..... .  ++|+++|+||+|+.....    ...+..  +..++++|||++
T Consensus       266 ~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~-~--~~piIlV~NK~Dl~~~~~----v~~~~~--~~~~~i~iSAkt  336 (351)
T TIGR03156       266 VREADLLLHVVDASDPDREEQIEAVEKVLEELGA-E--DIPQLLVYNKIDLLDEPR----IERLEE--GYPEAVFVSAKT  336 (351)
T ss_pred             HHhCCEEEEEEECCCCchHHHHHHHHHHHHHhcc-C--CCCEEEEEEeecCCChHh----HHHHHh--CCCCEEEEEccC
Confidence            8999999999999999887776655555544322 1  689999999999975321    111211  223589999999


Q ss_pred             C-CHHHHHHHHHHH
Q 006490          575 K-DLNNVFSRIIWA  587 (643)
Q Consensus       575 g-~i~~l~~~l~~~  587 (643)
                      | |++++++.|.+.
T Consensus       337 g~GI~eL~~~I~~~  350 (351)
T TIGR03156       337 GEGLDLLLEAIAER  350 (351)
T ss_pred             CCCHHHHHHHHHhh
Confidence            9 999999998764

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>cd01898 Obg Obg subfamily

Probab=99.81  E-value=6.3e-19  Score=164.97  Aligned_cols=161  Identities=18%  Similarity=0.128  Sum_probs=111.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchh----hhhh-hccHHhhccCC
Q 006490          425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG----VKKI-LSNKEALASCD  499 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~----~~~~-~~~~~~~~~ad  499 (643)
                      .|+++|++|||||||+|+|.+........+.++....+..+... +...+.+|||+|...    ...+ ......+..+|
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d   80 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVD-DGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTR   80 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcC-CCCeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence            58999999999999999999876422222322222223334444 334678899999631    1111 11234456799


Q ss_pred             EEEEEEeCCCh-hhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC-CH
Q 006490          500 VTIFVYDSSDE-YSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DL  577 (643)
Q Consensus       500 ~illv~D~s~~-~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g-~i  577 (643)
                      ++++|+|++++ .+++....|...+....... .++|+++|+||+|+.......+....+.......+++++||+++ |+
T Consensus        81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~-~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  159 (170)
T cd01898          81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPEL-LEKPRIVVLNKIDLLDEEELFELLKELLKELWGKPVFPISALTGEGL  159 (170)
T ss_pred             EEEEEEecCCCCCHHHHHHHHHHHHHHhCccc-cccccEEEEEchhcCCchhhHHHHHHHHhhCCCCCEEEEecCCCCCH
Confidence            99999999999 78888888988887654211 16899999999999775544455555555532234899999999 99


Q ss_pred             HHHHHHHHHH
Q 006490          578 NNVFSRIIWA  587 (643)
Q Consensus       578 ~~l~~~l~~~  587 (643)
                      +++|+++.+.
T Consensus       160 ~~l~~~i~~~  169 (170)
T cd01898         160 DELLRKLAEL  169 (170)
T ss_pred             HHHHHHHHhh
Confidence            9999998764

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>cd01890 LepA LepA subfamily

Probab=99.81  E-value=7e-19  Score=166.18  Aligned_cols=155  Identities=15%  Similarity=0.215  Sum_probs=111.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCC-------CCCCCCc------ccceEEEE--EEc---CCCcEEEEEEecCCchhhh
Q 006490          425 RCLLFGPQNAGKSALLNSFLERPFS-------ENYAPTT------GEQYAVNV--VDQ---PGGNKKTLILQEIPEEGVK  486 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~~~~-------~~~~~t~------~~~~~~~~--v~~---~g~~~~~~i~d~~g~~~~~  486 (643)
                      +|+++|.+|||||||+++|++....       ..+.++.      +..+....  +..   ++....+.+|||+|++.+.
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   81 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS   81 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence            5899999999999999999974311       1121221      11222211  111   4456677899999998887


Q ss_pred             hhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCC-
Q 006490          487 KILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE-  565 (643)
Q Consensus       487 ~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-  565 (643)
                      ..  +..+++.+|++++|+|++++.+++....|.... ..      ++|+++|+||+|+.... ..+..+++++.+++. 
T Consensus        82 ~~--~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~-~~------~~~iiiv~NK~Dl~~~~-~~~~~~~~~~~~~~~~  151 (179)
T cd01890          82 YE--VSRSLAACEGALLLVDATQGVEAQTLANFYLAL-EN------NLEIIPVINKIDLPSAD-PERVKQQIEDVLGLDP  151 (179)
T ss_pred             HH--HHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH-Hc------CCCEEEEEECCCCCcCC-HHHHHHHHHHHhCCCc
Confidence            76  677899999999999999987766655554322 22      78999999999986532 233445677777764 


Q ss_pred             -CcEEeeeccC-CHHHHHHHHHHHHh
Q 006490          566 -PPIPVSMKSK-DLNNVFSRIIWAAE  589 (643)
Q Consensus       566 -~~~~vSa~~g-~i~~l~~~l~~~~~  589 (643)
                       +++++||++| |++++++++.+.+.
T Consensus       152 ~~~~~~Sa~~g~gi~~l~~~l~~~~~  177 (179)
T cd01890         152 SEAILVSAKTGLGVEDLLEAIVERIP  177 (179)
T ss_pred             ccEEEeeccCCCCHHHHHHHHHhhCC
Confidence             4899999999 99999999988753

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>PLN00023 GTP-binding protein; Provisional

Probab=99.81  E-value=8e-19  Score=174.48  Aligned_cols=147  Identities=20%  Similarity=0.210  Sum_probs=120.2

Q ss_pred             ccccCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCC-------------CcEEEEEEecCCch
Q 006490          417 QQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPG-------------GNKKTLILQEIPEE  483 (643)
Q Consensus       417 ~~~~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g-------------~~~~~~i~d~~g~~  483 (643)
                      +......+||+|+|..|||||||+++|+++.+...+.+|++.++....+...+             ....+.+||++|++
T Consensus        15 ~~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqE   94 (334)
T PLN00023         15 GGPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHE   94 (334)
T ss_pred             cCCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCCh
Confidence            33445669999999999999999999999998888888988877666555432             34567899999999


Q ss_pred             hhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCC---------CCCCCcEEEEEeCCCCCCcc---c-
Q 006490          484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGED---------SGYGVPCLLIASKDDLKPYT---M-  550 (643)
Q Consensus       484 ~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~---------~~~~~pvilv~NK~Dl~~~~---~-  550 (643)
                      .+..+  +..+++++|++|+|||+++..+|+.+..|+..+......         ...++|++||+||+||..++   . 
T Consensus        95 rfrsL--~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~  172 (334)
T PLN00023         95 RYKDC--RSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGS  172 (334)
T ss_pred             hhhhh--hHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccccccccc
Confidence            99988  788899999999999999999999999999999875320         01158999999999997642   1 


Q ss_pred             ---cHHHHHHHHHHhCCC
Q 006490          551 ---AVQDSARVTQELGIE  565 (643)
Q Consensus       551 ---~~~~~~~~~~~~~~~  565 (643)
                         ..+.+++++++.++.
T Consensus       173 s~~~~e~a~~~A~~~g~l  190 (334)
T PLN00023        173 SGNLVDAARQWVEKQGLL  190 (334)
T ss_pred             ccccHHHHHHHHHHcCCC
Confidence               367899999998865

>cd01890 LepA LepA subfamily

Probab=99.81  E-value=4.7e-19  Score=167.38  Aligned_cols=155  Identities=18%  Similarity=0.167  Sum_probs=109.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC--C-----CCCCCCCC------CCee----eCCcc---cCCceeEEEEeCCCCCcch
Q 006490           14 RVVVVGDRGTGKSSLIAAAATES--V-----PEKVPPVH------APTR----LPPDF---YPDRVPVTIIDTSSSLENK   73 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~~~--~-----~~~~~~~~------~~~~----~~~~~---~~~~~~~~i~Dt~G~~~~~   73 (643)
                      +|+++|++|||||||+++|++..  +     ...+.++.      +.+.    ....+   ...++.+.+|||||++++.
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   81 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS   81 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence            59999999999999999999743  1     11111110      1111    11112   4567889999999999998


Q ss_pred             hhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcc-cce
Q 006490           74 GKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE-IET  152 (643)
Q Consensus        74 ~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~-~~~  152 (643)
                      ..+..+++.+|++|+|||+++..+.+... .|... ...  ++|+++|+||+|+....    .......+.+.++. ...
T Consensus        82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~-~~~~~-~~~--~~~iiiv~NK~Dl~~~~----~~~~~~~~~~~~~~~~~~  153 (179)
T cd01890          82 YEVSRSLAACEGALLLVDATQGVEAQTLA-NFYLA-LEN--NLEIIPVINKIDLPSAD----PERVKQQIEDVLGLDPSE  153 (179)
T ss_pred             HHHHHHHHhcCeEEEEEECCCCccHhhHH-HHHHH-HHc--CCCEEEEEECCCCCcCC----HHHHHHHHHHHhCCCccc
Confidence            88899999999999999999877666654 24332 223  78999999999986432    22223445554442 124


Q ss_pred             EEEeCcccCCChhHHHHHHHHHHh
Q 006490          153 CVECSATTMIQVPDVFYYAQKAVL  176 (643)
Q Consensus       153 ~~~~Sa~~~~gi~~l~~~i~~~~~  176 (643)
                      ++++||++|.|++++++++.+.+.
T Consensus       154 ~~~~Sa~~g~gi~~l~~~l~~~~~  177 (179)
T cd01890         154 AILVSAKTGLGVEDLLEAIVERIP  177 (179)
T ss_pred             EEEeeccCCCCHHHHHHHHHhhCC
Confidence            899999999999999999987653

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd01878 HflX HflX subfamily

Probab=99.81  E-value=5.7e-19  Score=170.52  Aligned_cols=159  Identities=19%  Similarity=0.176  Sum_probs=110.2

Q ss_pred             cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhh------hhhhccHH
Q 006490          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV------KKILSNKE  493 (643)
Q Consensus       420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~------~~~~~~~~  493 (643)
                      .+..++|+|+|++|||||||+|++++..+.....+.++.......+..+ +...+.+||++|....      ..+.....
T Consensus        38 ~~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~  116 (204)
T cd01878          38 RSGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLP-DGREVLLTDTVGFIRDLPHQLVEAFRSTLE  116 (204)
T ss_pred             hcCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEec-CCceEEEeCCCccccCCCHHHHHHHHHHHH
Confidence            3556899999999999999999999987543333322222333444555 3346788999996211      11111234


Q ss_pred             hhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeec
Q 006490          494 ALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMK  573 (643)
Q Consensus       494 ~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~  573 (643)
                      .+..+|++++|+|++++.++.....|...+..... .  ++|+++|+||+|+.......    ......+. +++++||+
T Consensus       117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~-~--~~~viiV~NK~Dl~~~~~~~----~~~~~~~~-~~~~~Sa~  188 (204)
T cd01878         117 EVAEADLLLHVVDASDPDYEEQIETVEKVLKELGA-E--DIPMILVLNKIDLLDDEELE----ERLEAGRP-DAVFISAK  188 (204)
T ss_pred             HHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCc-C--CCCEEEEEEccccCChHHHH----HHhhcCCC-ceEEEEcC
Confidence            46789999999999998887777666666654432 1  68999999999997643221    23333333 58999999


Q ss_pred             cC-CHHHHHHHHHHH
Q 006490          574 SK-DLNNVFSRIIWA  587 (643)
Q Consensus       574 ~g-~i~~l~~~l~~~  587 (643)
                      +| |+++++++|.+.
T Consensus       189 ~~~gi~~l~~~L~~~  203 (204)
T cd01878         189 TGEGLDELLEAIEEL  203 (204)
T ss_pred             CCCCHHHHHHHHHhh
Confidence            99 999999998764

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.81  E-value=9.6e-19  Score=185.86  Aligned_cols=186  Identities=16%  Similarity=0.138  Sum_probs=132.2

Q ss_pred             cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCcEEEEEEecCCchhhhh------hhccH
Q 006490          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK------ILSNK  492 (643)
Q Consensus       420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~-~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~------~~~~~  492 (643)
                      .+..+||+|+|+||||||||+|+|++..+..++. |+++.+.....+.++|  ..+.+|||+|......      +.++.
T Consensus       200 ~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~  277 (442)
T TIGR00450       200 LDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSF  277 (442)
T ss_pred             hhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHH
Confidence            3567899999999999999999999987665544 4444445555566653  4457899999744322      12245


Q ss_pred             HhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeee
Q 006490          493 EALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSM  572 (643)
Q Consensus       493 ~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa  572 (643)
                      .+++.||++++|+|++++.+++..  |+..+...      +.|+++|+||+|+...     ....+++.++.+ ++++||
T Consensus       278 ~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~~------~~piIlV~NK~Dl~~~-----~~~~~~~~~~~~-~~~vSa  343 (442)
T TIGR00450       278 KAIKQADLVIYVLDASQPLTKDDF--LIIDLNKS------KKPFILVLNKIDLKIN-----SLEFFVSSKVLN-SSNLSA  343 (442)
T ss_pred             HHHhhCCEEEEEEECCCCCChhHH--HHHHHhhC------CCCEEEEEECccCCCc-----chhhhhhhcCCc-eEEEEE
Confidence            788999999999999998876654  66555432      7899999999999653     223455666665 899999


Q ss_pred             ccCCHHHHHHHHHHHHhCCCCC-CC-CcccccchhhhhhhhchhhHHHHHH
Q 006490          573 KSKDLNNVFSRIIWAAEHPHLN-IP-ETETGRNRKRYRHLVNSSLVFVSVG  621 (643)
Q Consensus       573 ~~g~i~~l~~~l~~~~~~~~~~-~~-~~~~~~~~~~~~~~l~~~~~~~~~g  621 (643)
                      +++|++++++.+.+.+...... .. .........|+.+++.++..++.-+
T Consensus       344 k~~gI~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~r~~~~l~~a~~~l~~~  394 (442)
T TIGR00450       344 KQLKIKALVDLLTQKINAFYSKERVELDDYLISSWQAMILLEKAIAQLQQF  394 (442)
T ss_pred             ecCCHHHHHHHHHHHHHHHhcccccccccceEhHHHHHHHHHHHHHHHHHH
Confidence            9889999999988876533211 11 1112335678888888888877644

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>cd01898 Obg Obg subfamily

Probab=99.80  E-value=6.9e-19  Score=164.70  Aligned_cols=155  Identities=17%  Similarity=0.172  Sum_probs=106.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCCCCCeeeCCcccCCc-eeEEEEeCCCCCc----chhhhHH---hhccCC
Q 006490           14 RVVVVGDRGTGKSSLIAAAATESVP-EKVPPVHAPTRLPPDFYPDR-VPVTIIDTSSSLE----NKGKLNE---ELKRAD   84 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~i~Dt~G~~~----~~~~~~~---~~~~ad   84 (643)
                      +|+|+|++|||||||+|+|.+.... ...+++.... ....+...+ ..+.+|||||+.+    .......   .+..+|
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~-~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d   80 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVP-NLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTR   80 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCC-cceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence            5999999999999999999976532 2223221111 111223334 4899999999742    1122233   345699


Q ss_pred             EEEEEEECCCc-ccHHHHHHHHHHHHHhcC---CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCccc
Q 006490           85 AVVLTYACNQQ-STLSRLSSYWLPELRRLE---IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATT  160 (643)
Q Consensus        85 ~il~v~d~~~~-~s~~~~~~~~~~~l~~~~---~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  160 (643)
                      ++++|+|++++ .+++.+. .|.+.+....   .++|+++|+||+|+......   .+....+..+.. ..+++++||++
T Consensus        81 ~vi~v~D~~~~~~~~~~~~-~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~---~~~~~~~~~~~~-~~~~~~~Sa~~  155 (170)
T cd01898          81 LLLHVIDLSGDDDPVEDYK-TIRNELELYNPELLEKPRIVVLNKIDLLDEEEL---FELLKELLKELW-GKPVFPISALT  155 (170)
T ss_pred             EEEEEEecCCCCCHHHHHH-HHHHHHHHhCccccccccEEEEEchhcCCchhh---HHHHHHHHhhCC-CCCEEEEecCC
Confidence            99999999999 7888876 5888887653   36899999999998654332   222333333321 23689999999


Q ss_pred             CCChhHHHHHHHHH
Q 006490          161 MIQVPDVFYYAQKA  174 (643)
Q Consensus       161 ~~gi~~l~~~i~~~  174 (643)
                      +.|++++++++.+.
T Consensus       156 ~~gi~~l~~~i~~~  169 (170)
T cd01898         156 GEGLDELLRKLAEL  169 (170)
T ss_pred             CCCHHHHHHHHHhh
Confidence            99999999988754

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.80  E-value=6.7e-19  Score=179.34  Aligned_cols=152  Identities=19%  Similarity=0.284  Sum_probs=114.5

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-C-CcccceEEEEEEcCCCcEEEEEEecCCchh-----hhh--hhccHHh
Q 006490          424 FRCLLFGPQNAGKSALLNSFLERPFSENYA-P-TTGEQYAVNVVDQPGGNKKTLILQEIPEEG-----VKK--ILSNKEA  494 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~-~-t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~-----~~~--~~~~~~~  494 (643)
                      ..|+|+|+||||||||+|||+++..+++++ | +|++.. .....+. + ..+.++||+|-+.     +..  ..++..+
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~-y~~~~~~-~-~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~A   80 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRI-YGDAEWL-G-REFILIDTGGLDDGDEDELQELIREQALIA   80 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCc-cceeEEc-C-ceEEEEECCCCCcCCchHHHHHHHHHHHHH
Confidence            479999999999999999999999999888 5 555543 3334444 2 3377899998542     222  1336788


Q ss_pred             hccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeecc
Q 006490          495 LASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKS  574 (643)
Q Consensus       495 ~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~  574 (643)
                      +..||++|||+|+..+.+ .........++..      ++|+++|+||+|-..    .+....-...+|+..++++||.+
T Consensus        81 i~eADvilfvVD~~~Git-~~D~~ia~~Lr~~------~kpviLvvNK~D~~~----~e~~~~efyslG~g~~~~ISA~H  149 (444)
T COG1160          81 IEEADVILFVVDGREGIT-PADEEIAKILRRS------KKPVILVVNKIDNLK----AEELAYEFYSLGFGEPVPISAEH  149 (444)
T ss_pred             HHhCCEEEEEEeCCCCCC-HHHHHHHHHHHhc------CCCEEEEEEcccCch----hhhhHHHHHhcCCCCceEeehhh
Confidence            899999999999998765 3344444444432      799999999999764    22333345667888899999999


Q ss_pred             C-CHHHHHHHHHHHHh
Q 006490          575 K-DLNNVFSRIIWAAE  589 (643)
Q Consensus       575 g-~i~~l~~~l~~~~~  589 (643)
                      | |+.+|++.+.+.+.
T Consensus       150 g~Gi~dLld~v~~~l~  165 (444)
T COG1160         150 GRGIGDLLDAVLELLP  165 (444)
T ss_pred             ccCHHHHHHHHHhhcC
Confidence            9 99999999999874

>cd04171 SelB SelB subfamily

Probab=99.80  E-value=4.7e-19  Score=164.68  Aligned_cols=157  Identities=17%  Similarity=0.055  Sum_probs=98.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCC---CCCCCCCCCCCeeeCCcccCC-ceeEEEEeCCCCCcchhhhHHhhccCCEEEE
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATES---VPEKVPPVHAPTRLPPDFYPD-RVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (643)
                      +.|+++|++|||||||+|+|++..   +.....+..+.......+... +..+.+|||||++.+......+++.+|++++
T Consensus         1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~   80 (164)
T cd04171           1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL   80 (164)
T ss_pred             CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence            369999999999999999999743   221111111111111112222 6789999999998877666778899999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhc-ccceEEEeCcccCCChhHH
Q 006490           89 TYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR-EIETCVECSATTMIQVPDV  167 (643)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi~~l  167 (643)
                      |+|+++....+..  ..+..++... .+|+++|+||+|+..........+.........+ ...+++++||++|.|++++
T Consensus        81 V~d~~~~~~~~~~--~~~~~~~~~~-~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l  157 (164)
T cd04171          81 VVAADEGIMPQTR--EHLEILELLG-IKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEGIEEL  157 (164)
T ss_pred             EEECCCCccHhHH--HHHHHHHHhC-CCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCHHHH
Confidence            9998763211111  1222333331 3499999999999753211001111222222210 1247999999999999999


Q ss_pred             HHHHH
Q 006490          168 FYYAQ  172 (643)
Q Consensus       168 ~~~i~  172 (643)
                      ++.+.
T Consensus       158 ~~~l~  162 (164)
T cd04171         158 KEYLD  162 (164)
T ss_pred             HHHHh
Confidence            98765

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>PRK00089 era GTPase Era; Reviewed

Probab=99.80  E-value=2.1e-18  Score=175.95  Aligned_cols=182  Identities=17%  Similarity=0.246  Sum_probs=125.5

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-C-CcccceEEEEEEcCCCcEEEEEEecCCchhhhh-----h-hccHHhh
Q 006490          424 FRCLLFGPQNAGKSALLNSFLERPFSENYA-P-TTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK-----I-LSNKEAL  495 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~-~-t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~-----~-~~~~~~~  495 (643)
                      -.|+|+|+||||||||+|+|++.+...++. + |++.  ....+... +...+.++||+|......     + ......+
T Consensus         6 g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~--~i~~i~~~-~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~   82 (292)
T PRK00089          6 GFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRH--RIRGIVTE-DDAQIIFVDTPGIHKPKRALNRAMNKAAWSSL   82 (292)
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccc--cEEEEEEc-CCceEEEEECCCCCCchhHHHHHHHHHHHHHH
Confidence            469999999999999999999998877765 3 3333  22223233 336788899999533211     1 1145577


Q ss_pred             ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCc-cccHHHHHHHHHHhCCCCcEEeeecc
Q 006490          496 ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPY-TMAVQDSARVTQELGIEPPIPVSMKS  574 (643)
Q Consensus       496 ~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~vSa~~  574 (643)
                      ..+|++++|+|++++.+ ......+..+...      +.|+++|+||+|+... .......+.+.+..++.+++++||++
T Consensus        83 ~~~D~il~vvd~~~~~~-~~~~~i~~~l~~~------~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~  155 (292)
T PRK00089         83 KDVDLVLFVVDADEKIG-PGDEFILEKLKKV------KTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALK  155 (292)
T ss_pred             hcCCEEEEEEeCCCCCC-hhHHHHHHHHhhc------CCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCC
Confidence            89999999999998433 2223333333322      6899999999999843 34455666777767777799999999


Q ss_pred             C-CHHHHHHHHHHHHh-CCCCCCCCcccccchh-hhhhhhchhh
Q 006490          575 K-DLNNVFSRIIWAAE-HPHLNIPETETGRNRK-RYRHLVNSSL  615 (643)
Q Consensus       575 g-~i~~l~~~l~~~~~-~~~~~~~~~~~~~~~~-~~~~~l~~~~  615 (643)
                      + |++++++.+.+.+. ++..++++..+..+.+ ...+.+++.+
T Consensus       156 ~~gv~~L~~~L~~~l~~~~~~y~~~~~td~~~r~~~~EiiRe~~  199 (292)
T PRK00089        156 GDNVDELLDVIAKYLPEGPPYYPEDQITDRPERFLAAEIIREKL  199 (292)
T ss_pred             CCCHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence            9 99999999999874 4555666666665544 4455545443

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.80  E-value=2.3e-17  Score=187.00  Aligned_cols=155  Identities=19%  Similarity=0.236  Sum_probs=107.1

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCcEEEEEEecCCchh----hhh--hhccHHhh
Q 006490          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPEEG----VKK--ILSNKEAL  495 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~-~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~----~~~--~~~~~~~~  495 (643)
                      ..+|+|+|+||||||||+|+|++.....+.. |+++.+.........  ...+.+|||+|.+.    +..  ...+..++
T Consensus       275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~--~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~  352 (712)
T PRK09518        275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWA--GTDFKLVDTGGWEADVEGIDSAIASQAQIAV  352 (712)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEEC--CEEEEEEeCCCcCCCCccHHHHHHHHHHHHH
Confidence            4589999999999999999999987655544 433333333333333  34677899999652    111  12245678


Q ss_pred             ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC
Q 006490          496 ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK  575 (643)
Q Consensus       496 ~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g  575 (643)
                      ..||++|+|+|++++.+ .....|...+...      ++|+++|+||+|+....   ....+ ...+++..+++|||++|
T Consensus       353 ~~aD~iL~VvDa~~~~~-~~d~~i~~~Lr~~------~~pvIlV~NK~D~~~~~---~~~~~-~~~lg~~~~~~iSA~~g  421 (712)
T PRK09518        353 SLADAVVFVVDGQVGLT-STDERIVRMLRRA------GKPVVLAVNKIDDQASE---YDAAE-FWKLGLGEPYPISAMHG  421 (712)
T ss_pred             HhCCEEEEEEECCCCCC-HHHHHHHHHHHhc------CCCEEEEEECcccccch---hhHHH-HHHcCCCCeEEEECCCC
Confidence            99999999999987643 2223455555443      89999999999986532   11122 22356655789999999


Q ss_pred             -CHHHHHHHHHHHHhC
Q 006490          576 -DLNNVFSRIIWAAEH  590 (643)
Q Consensus       576 -~i~~l~~~l~~~~~~  590 (643)
                       |+++++++|++.+..
T Consensus       422 ~GI~eLl~~i~~~l~~  437 (712)
T PRK09518        422 RGVGDLLDEALDSLKV  437 (712)
T ss_pred             CCchHHHHHHHHhccc
Confidence             999999999988743

>cd04155 Arl3 Arl3 subfamily

Probab=99.80  E-value=1.9e-18  Score=162.17  Aligned_cols=152  Identities=24%  Similarity=0.355  Sum_probs=114.8

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i  501 (643)
                      ..++|+|+|++|||||||++++.+..+.. +.||.+  +....+...|  ..+.+||++|+..+...  +..+++.+|++
T Consensus        13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~t~g--~~~~~i~~~~--~~~~~~D~~G~~~~~~~--~~~~~~~~~~i   85 (173)
T cd04155          13 EEPRILILGLDNAGKTTILKQLASEDISH-ITPTQG--FNIKTVQSDG--FKLNVWDIGGQRAIRPY--WRNYFENTDCL   85 (173)
T ss_pred             CccEEEEEccCCCCHHHHHHHHhcCCCcc-cCCCCC--cceEEEEECC--EEEEEEECCCCHHHHHH--HHHHhcCCCEE
Confidence            46899999999999999999999986643 334544  3334455542  56778999998877665  56778999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCC-------CcEEeeecc
Q 006490          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE-------PPIPVSMKS  574 (643)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-------~~~~vSa~~  574 (643)
                      ++|+|+++..++.....++..+.......  ++|+++++||+|+....    ..+++.+.+++.       +++++||++
T Consensus        86 i~v~D~~~~~~~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~~~----~~~~i~~~l~~~~~~~~~~~~~~~Sa~~  159 (173)
T cd04155          86 IYVIDSADKKRLEEAGAELVELLEEEKLA--GVPVLVFANKQDLATAA----PAEEIAEALNLHDLRDRTWHIQACSAKT  159 (173)
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHhChhhc--CCCEEEEEECCCCccCC----CHHHHHHHcCCcccCCCeEEEEEeECCC
Confidence            99999999888887777776665433222  79999999999986532    233444555543       367999999


Q ss_pred             C-CHHHHHHHHHH
Q 006490          575 K-DLNNVFSRIIW  586 (643)
Q Consensus       575 g-~i~~l~~~l~~  586 (643)
                      | |++++|++|++
T Consensus       160 ~~gi~~~~~~l~~  172 (173)
T cd04155         160 GEGLQEGMNWVCK  172 (173)
T ss_pred             CCCHHHHHHHHhc
Confidence            9 99999999875

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd04155 Arl3 Arl3 subfamily

Probab=99.80  E-value=1.1e-18  Score=163.95  Aligned_cols=155  Identities=17%  Similarity=0.214  Sum_probs=111.7

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEE
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (643)
                      ..+.++|+|+|++|||||||++++.+..+....++ .+....  .+...+..+.+|||||...+...+..+++.+|++++
T Consensus        11 ~~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t-~g~~~~--~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~   87 (173)
T cd04155          11 SSEEPRILILGLDNAGKTTILKQLASEDISHITPT-QGFNIK--TVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLIY   87 (173)
T ss_pred             cCCccEEEEEccCCCCHHHHHHHHhcCCCcccCCC-CCcceE--EEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEE
Confidence            34579999999999999999999998765332222 222111  233346889999999988877778888999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcc------cceEEEeCcccC
Q 006490           89 TYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE------IETCVECSATTM  161 (643)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~Sa~~~  161 (643)
                      |+|+++..++......+...+... ..++|+++++||+|+......       +.+.+.++-      ..+++++||++|
T Consensus        88 v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-------~~i~~~l~~~~~~~~~~~~~~~Sa~~~  160 (173)
T cd04155          88 VIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPA-------EEIAEALNLHDLRDRTWHIQACSAKTG  160 (173)
T ss_pred             EEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCH-------HHHHHHcCCcccCCCeEEEEEeECCCC
Confidence            999999888877765343433321 247999999999998653221       122222221      114789999999


Q ss_pred             CChhHHHHHHHH
Q 006490          162 IQVPDVFYYAQK  173 (643)
Q Consensus       162 ~gi~~l~~~i~~  173 (643)
                      .|++++|+++.+
T Consensus       161 ~gi~~~~~~l~~  172 (173)
T cd04155         161 EGLQEGMNWVCK  172 (173)
T ss_pred             CCHHHHHHHHhc
Confidence            999999999864

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.80  E-value=1.1e-18  Score=186.69  Aligned_cols=196  Identities=20%  Similarity=0.216  Sum_probs=130.6

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCC--CCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhh--------hHH
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATESV--PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGK--------LNE   78 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~   78 (643)
                      .+..++|+|+|+||||||||+|+|++...  +.+.++++... ....+..++.++.+|||||+.++...        ...
T Consensus       212 ~~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~-~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~  290 (449)
T PRK05291        212 LREGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDV-IEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSRE  290 (449)
T ss_pred             hhcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCccccc-EEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHH
Confidence            45678999999999999999999999763  45555533222 22334456788999999998765432        224


Q ss_pred             hhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCc
Q 006490           79 ELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSA  158 (643)
Q Consensus        79 ~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  158 (643)
                      +++.+|++++|+|++++.+.+... .|..     ..++|+++|+||+|+...... .         ...  ..+++++||
T Consensus       291 ~~~~aD~il~VvD~s~~~s~~~~~-~l~~-----~~~~piiiV~NK~DL~~~~~~-~---------~~~--~~~~i~iSA  352 (449)
T PRK05291        291 AIEEADLVLLVLDASEPLTEEDDE-ILEE-----LKDKPVIVVLNKADLTGEIDL-E---------EEN--GKPVIRISA  352 (449)
T ss_pred             HHHhCCEEEEEecCCCCCChhHHH-HHHh-----cCCCCcEEEEEhhhccccchh-h---------hcc--CCceEEEEe
Confidence            688999999999999988777543 2332     347899999999999754222 1         111  136899999


Q ss_pred             ccCCChhHHHHHHHHHHhCCC-----CCCCccccc-cchHHHHHHHHhhhhhcCCCCCCCCChHHHHHHhh
Q 006490          159 TTMIQVPDVFYYAQKAVLHPT-----APLFDHDEQ-TLKPRCVRALKRIFIICDHDMDGALNDAELNEFQV  223 (643)
Q Consensus       159 ~~~~gi~~l~~~i~~~~~~~~-----~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~l~~~el~~~~~  223 (643)
                      ++|.|++++++++.+.+....     .......++ .....+.++|.+............+..++++....
T Consensus       353 ktg~GI~~L~~~L~~~l~~~~~~~~~~~~~~~~R~~~~l~~a~~~l~~~~~~~~~~~~~~~~a~~l~~a~~  423 (449)
T PRK05291        353 KTGEGIDELREAIKELAFGGFGGNQEGVFLTNARHLEALERALEHLERALEGLESGLPLELLAEDLRLALE  423 (449)
T ss_pred             eCCCCHHHHHHHHHHHHhhccccccccceehHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence            999999999999998774311     111122222 24455666666554443333344555666655443

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.80  E-value=2.6e-18  Score=160.51  Aligned_cols=156  Identities=17%  Similarity=0.182  Sum_probs=105.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhh-----h-hccHHhh-cc
Q 006490          425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK-----I-LSNKEAL-AS  497 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~-----~-~~~~~~~-~~  497 (643)
                      +|+++|++|||||||+|+|.+..+.....+.++.......+..  ....+.+|||+|......     + ......+ ..
T Consensus         2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~   79 (168)
T cd01897           2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDY--KYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHL   79 (168)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEcc--CceEEEEEECCCcCCccccCCchHHHHHHHHHHhc
Confidence            7999999999999999999998765332232222233333333  246788899999732100     0 0011111 34


Q ss_pred             CCEEEEEEeCCChhhH--HHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC
Q 006490          498 CDVTIFVYDSSDEYSW--KRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK  575 (643)
Q Consensus       498 ad~illv~D~s~~~s~--~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g  575 (643)
                      +|++++|+|+++..++  +....|+..+.....    +.|+++|+||+|+.......+ ...+.+..+. ++++|||++|
T Consensus        80 ~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~----~~pvilv~NK~Dl~~~~~~~~-~~~~~~~~~~-~~~~~Sa~~~  153 (168)
T cd01897          80 RAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFK----NKPVIVVLNKIDLLTFEDLSE-IEEEEELEGE-EVLKISTLTE  153 (168)
T ss_pred             cCcEEEEEeCCcccccchHHHHHHHHHHHhhcC----cCCeEEEEEccccCchhhHHH-HHHhhhhccC-ceEEEEeccc
Confidence            6899999999987543  555667777765432    789999999999976443322 3444444444 4999999999


Q ss_pred             -CHHHHHHHHHHHH
Q 006490          576 -DLNNVFSRIIWAA  588 (643)
Q Consensus       576 -~i~~l~~~l~~~~  588 (643)
                       |++++++++.+.+
T Consensus       154 ~gi~~l~~~l~~~~  167 (168)
T cd01897         154 EGVDEVKNKACELL  167 (168)
T ss_pred             CCHHHHHHHHHHHh
Confidence             9999999998764

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.80  E-value=1e-18  Score=163.14  Aligned_cols=156  Identities=17%  Similarity=0.108  Sum_probs=107.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccC---CceeEEEEeCCCCCcchhhhHHhhccCCEEEEEE
Q 006490           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYP---DRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~   90 (643)
                      .|+|+|++|||||||+|+|+...+.....+..........+..   .+..+.+|||||+..+...+..+++.+|++++|+
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~   81 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV   81 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence            4899999999999999999988865542221111111112222   4678999999999888888888899999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHH----hhcccceEEEeCcccCCChhH
Q 006490           91 ACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQ----QFREIETCVECSATTMIQVPD  166 (643)
Q Consensus        91 d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~Sa~~~~gi~~  166 (643)
                      |+++....+...  .+..++..  ++|+++|+||+|+...... ........+..    ..+...+++++||++|.|+.+
T Consensus        82 d~~~~~~~~~~~--~~~~~~~~--~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  156 (168)
T cd01887          82 AADDGVMPQTIE--AIKLAKAA--NVPFIVALNKIDKPNANPE-RVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDD  156 (168)
T ss_pred             ECCCCccHHHHH--HHHHHHHc--CCCEEEEEEceecccccHH-HHHHHHHHhhccccccccCcCcEEEeecccCCCHHH
Confidence            998754333221  33445544  7899999999998743211 11122222211    122224689999999999999


Q ss_pred             HHHHHHHH
Q 006490          167 VFYYAQKA  174 (643)
Q Consensus       167 l~~~i~~~  174 (643)
                      +++++.+.
T Consensus       157 l~~~l~~~  164 (168)
T cd01887         157 LLEAILLL  164 (168)
T ss_pred             HHHHHHHh
Confidence            99998765

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.79  E-value=3.5e-18  Score=178.39  Aligned_cols=191  Identities=17%  Similarity=0.175  Sum_probs=130.9

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhh----h-hccHHhhcc
Q 006490          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK----I-LSNKEALAS  497 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~----~-~~~~~~~~~  497 (643)
                      ...|+|||.||||||||+|+|++.+......|.|+.....-++... ....+.++|++|...-..    + .+...++..
T Consensus       159 iadValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~-~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~r  237 (390)
T PRK12298        159 LADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVD-DERSFVVADIPGLIEGASEGAGLGIRFLKHLER  237 (390)
T ss_pred             cccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeC-CCcEEEEEeCCCccccccchhhHHHHHHHHHHh
Confidence            3469999999999999999999876433333533333333344444 345678899999632110    1 123457899


Q ss_pred             CCEEEEEEeCC---ChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCC-CcEEeeec
Q 006490          498 CDVTIFVYDSS---DEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE-PPIPVSMK  573 (643)
Q Consensus       498 ad~illv~D~s---~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~vSa~  573 (643)
                      +|++++|+|++   +...++....|..++..+.... .++|+++|+||+|+.......+..+++.+.++.. +++++||+
T Consensus       238 advlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L-~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~~~~~Vi~ISA~  316 (390)
T PRK12298        238 CRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKL-AEKPRWLVFNKIDLLDEEEAEERAKAIVEALGWEGPVYLISAA  316 (390)
T ss_pred             CCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhh-cCCCEEEEEeCCccCChHHHHHHHHHHHHHhCCCCCEEEEECC
Confidence            99999999998   4455677777777777653211 1689999999999976544455566666666653 58999999


Q ss_pred             cC-CHHHHHHHHHHHHh-CCCCCCCCcccccchh-hhhhhhchhh
Q 006490          574 SK-DLNNVFSRIIWAAE-HPHLNIPETETGRNRK-RYRHLVNSSL  615 (643)
Q Consensus       574 ~g-~i~~l~~~l~~~~~-~~~~~~~~~~~~~~~~-~~~~~l~~~~  615 (643)
                      ++ |++++++.|.+.+. .+..++++..+..+.+ ...+++++.+
T Consensus       317 tg~GIdeLl~~I~~~L~~~~~~~~~~~~td~~~~~~~~EiiRE~~  361 (390)
T PRK12298        317 SGLGVKELCWDLMTFIEENPREEAEEAEAPEKVEFMWDDYHREQL  361 (390)
T ss_pred             CCcCHHHHHHHHHHHhhhCcccCCcccccCccHHHHHHHHHHHHh
Confidence            99 99999999999874 4555556666555544 5555555554

>cd04171 SelB SelB subfamily

Probab=99.79  E-value=2.5e-18  Score=159.80  Aligned_cols=153  Identities=15%  Similarity=0.107  Sum_probs=100.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCC---CCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490          425 RCLLFGPQNAGKSALLNSFLERPFSE---NYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~~~~~---~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i  501 (643)
                      .|+++|++|||||||+|+|++.....   .+.++++.+.....+..+ ....+.+|||+|++.+...  ...++..||++
T Consensus         2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~~DtpG~~~~~~~--~~~~~~~ad~i   78 (164)
T cd04171           2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLP-SGKRLGFIDVPGHEKFIKN--MLAGAGGIDLV   78 (164)
T ss_pred             EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEec-CCcEEEEEECCChHHHHHH--HHhhhhcCCEE
Confidence            58999999999999999999754222   222333333333444444 2356788999999877554  56678899999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc---HHHHHHHHHHh--CCCCcEEeeeccC-
Q 006490          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA---VQDSARVTQEL--GIEPPIPVSMKSK-  575 (643)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~---~~~~~~~~~~~--~~~~~~~vSa~~g-  575 (643)
                      ++|+|++++.. .+....+..+... .    ..|+++|+||+|+......   .+...+..+..  ...+++++||++| 
T Consensus        79 i~V~d~~~~~~-~~~~~~~~~~~~~-~----~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  152 (164)
T cd04171          79 LLVVAADEGIM-PQTREHLEILELL-G----IKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGE  152 (164)
T ss_pred             EEEEECCCCcc-HhHHHHHHHHHHh-C----CCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCc
Confidence            99999987321 1112222222222 1    2499999999999764221   22333333332  1235999999999 


Q ss_pred             CHHHHHHHHHH
Q 006490          576 DLNNVFSRIIW  586 (643)
Q Consensus       576 ~i~~l~~~l~~  586 (643)
                      |++++++.+.+
T Consensus       153 ~v~~l~~~l~~  163 (164)
T cd04171         153 GIEELKEYLDE  163 (164)
T ss_pred             CHHHHHHHHhh
Confidence            99999998754

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.79  E-value=1.4e-18  Score=184.69  Aligned_cols=199  Identities=18%  Similarity=0.204  Sum_probs=130.7

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCC--CCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhh--------hHH
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATES--VPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGK--------LNE   78 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~   78 (643)
                      .++.+||+|+|+||||||||+|+|++..  ++.++|+++.. .....+..++..+.+|||||+.++...        ...
T Consensus       200 ~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd-~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~  278 (442)
T TIGR00450       200 LDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRD-VVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFK  278 (442)
T ss_pred             hhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEE-EEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHH
Confidence            4567999999999999999999999875  45556653322 233445566788999999998754432        235


Q ss_pred             hhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCc
Q 006490           79 ELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSA  158 (643)
Q Consensus        79 ~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  158 (643)
                      +++.+|++|+|||++++.+.+..   |+..+...  ++|+++|+||+|+...  .      ...+.+.++  .+++++||
T Consensus       279 ~~~~aD~il~V~D~s~~~s~~~~---~l~~~~~~--~~piIlV~NK~Dl~~~--~------~~~~~~~~~--~~~~~vSa  343 (442)
T TIGR00450       279 AIKQADLVIYVLDASQPLTKDDF---LIIDLNKS--KKPFILVLNKIDLKIN--S------LEFFVSSKV--LNSSNLSA  343 (442)
T ss_pred             HHhhCCEEEEEEECCCCCChhHH---HHHHHhhC--CCCEEEEEECccCCCc--c------hhhhhhhcC--CceEEEEE
Confidence            78999999999999998877653   66665543  7899999999998643  1      122333333  25899999


Q ss_pred             ccCCChhHHHHHHHHHHhCCCC--------CCCccccc-cchHHHHHHHHhhhhhcCCCCCCCCChHHHHHHhhh
Q 006490          159 TTMIQVPDVFYYAQKAVLHPTA--------PLFDHDEQ-TLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVK  224 (643)
Q Consensus       159 ~~~~gi~~l~~~i~~~~~~~~~--------~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~l~~~el~~~~~~  224 (643)
                      ++ .||+++++.+.+.+.....        ......++ ....++..+|.+............+..++++.....
T Consensus       344 k~-~gI~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~r~~~~l~~a~~~l~~~~~~~~~~~~~el~a~~l~~a~~~  417 (442)
T TIGR00450       344 KQ-LKIKALVDLLTQKINAFYSKERVELDDYLISSWQAMILLEKAIAQLQQFLSKLDRQLFLDMLVFHLREAINC  417 (442)
T ss_pred             ec-CCHHHHHHHHHHHHHHHhcccccccccceEhHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence            98 6999999988886633211        11111111 234445555555444333333345555666554443

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.79  E-value=3.3e-18  Score=175.14  Aligned_cols=164  Identities=17%  Similarity=0.085  Sum_probs=118.2

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhh----hhh-hccHHhhcc
Q 006490          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV----KKI-LSNKEALAS  497 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~----~~~-~~~~~~~~~  497 (643)
                      ...|+|||.||||||||+|+|.+........|.|+.....-.+... ....+.++|++|...-    ..+ .+...+++.
T Consensus       158 ~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~-~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~  236 (335)
T PRK12299        158 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVD-DYKSFVIADIPGLIEGASEGAGLGHRFLKHIER  236 (335)
T ss_pred             cCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeC-CCcEEEEEeCCCccCCCCccccHHHHHHHHhhh
Confidence            3579999999999999999999866443333433333444445554 3456788999985311    111 124567789


Q ss_pred             CCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-
Q 006490          498 CDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-  575 (643)
Q Consensus       498 ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-  575 (643)
                      ||++++|+|+++..+++....|..++..+.... .++|+++|+||+|+...... .+..+.+.+..+.. ++++||+++ 
T Consensus       237 a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L-~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~-i~~iSAktg~  314 (335)
T PRK12299        237 TRLLLHLVDIEAVDPVEDYKTIRNELEKYSPEL-ADKPRILVLNKIDLLDEEEEREKRAALELAALGGP-VFLISAVTGE  314 (335)
T ss_pred             cCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhc-ccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCC-EEEEEcCCCC
Confidence            999999999998878898889998887764311 16899999999999764432 22344444555554 999999999 


Q ss_pred             CHHHHHHHHHHHHh
Q 006490          576 DLNNVFSRIIWAAE  589 (643)
Q Consensus       576 ~i~~l~~~l~~~~~  589 (643)
                      |+++++++|.+.+.
T Consensus       315 GI~eL~~~L~~~l~  328 (335)
T PRK12299        315 GLDELLRALWELLE  328 (335)
T ss_pred             CHHHHHHHHHHHHH
Confidence            99999999998775

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.79  E-value=2e-18  Score=176.75  Aligned_cols=158  Identities=18%  Similarity=0.135  Sum_probs=112.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCCCCCeeeCCccc-CCceeEEEEeCCCCCcch----hhh---HHhhccC
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATESV-PEKVPPVHAPTRLPPDFY-PDRVPVTIIDTSSSLENK----GKL---NEELKRA   83 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~----~~~---~~~~~~a   83 (643)
                      ..|+|||.||||||||+|+|++... +.++|.++..... ..+. .+..++.+|||||+.+..    .+.   -..++++
T Consensus       159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~-G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a  237 (335)
T PRK12299        159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNL-GVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERT  237 (335)
T ss_pred             CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceE-EEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence            4699999999999999999998653 2334442222112 2222 255679999999985422    122   2456789


Q ss_pred             CEEEEEEECCCcccHHHHHHHHHHHHHhcCC---CCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCccc
Q 006490           84 DAVVLTYACNQQSTLSRLSSYWLPELRRLEI---KVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATT  160 (643)
Q Consensus        84 d~il~v~d~~~~~s~~~~~~~~~~~l~~~~~---~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  160 (643)
                      +++|+|+|+++..+++.+. .|..++..+.+   ++|+++|+||+|+......  ..+..+.+....+  .++++|||++
T Consensus       238 ~vlI~ViD~s~~~s~e~~~-~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~--~~~~~~~~~~~~~--~~i~~iSAkt  312 (335)
T PRK12299        238 RLLLHLVDIEAVDPVEDYK-TIRNELEKYSPELADKPRILVLNKIDLLDEEEE--REKRAALELAALG--GPVFLISAVT  312 (335)
T ss_pred             CEEEEEEcCCCCCCHHHHH-HHHHHHHHhhhhcccCCeEEEEECcccCCchhH--HHHHHHHHHHhcC--CCEEEEEcCC
Confidence            9999999999888888887 58888877542   7899999999998754332  1222233333332  3689999999


Q ss_pred             CCChhHHHHHHHHHHh
Q 006490          161 MIQVPDVFYYAQKAVL  176 (643)
Q Consensus       161 ~~gi~~l~~~i~~~~~  176 (643)
                      +.||+++++++.+.+.
T Consensus       313 g~GI~eL~~~L~~~l~  328 (335)
T PRK12299        313 GEGLDELLRALWELLE  328 (335)
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            9999999999988764

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.79  E-value=2e-18  Score=184.76  Aligned_cols=182  Identities=19%  Similarity=0.186  Sum_probs=127.2

Q ss_pred             cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCcEEEEEEecCCchhhhh------hhccH
Q 006490          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK------ILSNK  492 (643)
Q Consensus       420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~-~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~------~~~~~  492 (643)
                      .+..++|+++|.||||||||+|+|++.++..+.+ +.++.++....+...|  ..+.+|||+|......      +.++.
T Consensus       212 ~~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~  289 (449)
T PRK05291        212 LREGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSR  289 (449)
T ss_pred             hhcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHH
Confidence            3456899999999999999999999988755544 4334445455556653  4577899999754322      22355


Q ss_pred             HhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeee
Q 006490          493 EALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSM  572 (643)
Q Consensus       493 ~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa  572 (643)
                      .+++.||++++|+|++++.+++....|..     ..    +.|+++|+||+|+.......       ...+. +++++||
T Consensus       290 ~~~~~aD~il~VvD~s~~~s~~~~~~l~~-----~~----~~piiiV~NK~DL~~~~~~~-------~~~~~-~~i~iSA  352 (449)
T PRK05291        290 EAIEEADLVLLVLDASEPLTEEDDEILEE-----LK----DKPVIVVLNKADLTGEIDLE-------EENGK-PVIRISA  352 (449)
T ss_pred             HHHHhCCEEEEEecCCCCCChhHHHHHHh-----cC----CCCcEEEEEhhhccccchhh-------hccCC-ceEEEEe
Confidence            67899999999999999887765433332     11    78999999999997632211       22233 5899999


Q ss_pred             ccC-CHHHHHHHHHHHHhCCCCCCCCcccccchhhhhhhhchhhHHHHHH
Q 006490          573 KSK-DLNNVFSRIIWAAEHPHLNIPETETGRNRKRYRHLVNSSLVFVSVG  621 (643)
Q Consensus       573 ~~g-~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g  621 (643)
                      ++| |+++++++|.+.+...... ..........|+++++.++..++.-.
T Consensus       353 ktg~GI~~L~~~L~~~l~~~~~~-~~~~~~~~~~R~~~~l~~a~~~l~~~  401 (449)
T PRK05291        353 KTGEGIDELREAIKELAFGGFGG-NQEGVFLTNARHLEALERALEHLERA  401 (449)
T ss_pred             eCCCCHHHHHHHHHHHHhhcccc-ccccceehHHHHHHHHHHHHHHHHHH
Confidence            999 9999999999987542211 11222335568888888887776543

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.79  E-value=1e-18  Score=163.83  Aligned_cols=161  Identities=16%  Similarity=0.261  Sum_probs=120.6

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEE
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (643)
                      .++.+||+++|.+|+|||||++++..+.+....|+ .+...  ..+...++.+.+||.+|...+...++.+++.+|++||
T Consensus        11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT-~g~~~--~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIf   87 (175)
T PF00025_consen   11 KKKEIKILILGLDGSGKTTLLNRLKNGEISETIPT-IGFNI--EEIKYKGYSLTIWDLGGQESFRPLWKSYFQNADGIIF   87 (175)
T ss_dssp             TTSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEE-SSEEE--EEEEETTEEEEEEEESSSGGGGGGGGGGHTTESEEEE
T ss_pred             cCcEEEEEEECCCccchHHHHHHhhhccccccCcc-ccccc--ceeeeCcEEEEEEeccccccccccceeeccccceeEE
Confidence            37789999999999999999999998765443332 22211  2344578899999999999899999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCCCCCccchhhhhhhHH-HHhhc--ccceEEEeCcccCCCh
Q 006490           89 TYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPI-MQQFR--EIETCVECSATTMIQV  164 (643)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~Sa~~~~gi  164 (643)
                      |+|.++...+......+...+... ..++|+++++||+|+......   .+....+ ...+.  ....++.|||.+|+|+
T Consensus        88 VvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~---~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv  164 (175)
T PF00025_consen   88 VVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSE---EEIKEYLGLEKLKNKRPWSVFSCSAKTGEGV  164 (175)
T ss_dssp             EEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTH---HHHHHHTTGGGTTSSSCEEEEEEBTTTTBTH
T ss_pred             EEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchh---hHHHhhhhhhhcccCCceEEEeeeccCCcCH
Confidence            999999998888887665555432 247999999999998764322   1111111 11222  2235899999999999


Q ss_pred             hHHHHHHHHHH
Q 006490          165 PDVFYYAQKAV  175 (643)
Q Consensus       165 ~~l~~~i~~~~  175 (643)
                      .+.++|+.+.+
T Consensus       165 ~e~l~WL~~~~  175 (175)
T PF00025_consen  165 DEGLEWLIEQI  175 (175)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHhcC
Confidence            99999998764

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.78  E-value=7.1e-18  Score=172.66  Aligned_cols=164  Identities=16%  Similarity=0.084  Sum_probs=118.3

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhh----hh-hccHHhhc
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK----KI-LSNKEALA  496 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~----~~-~~~~~~~~  496 (643)
                      -...|+|+|.||||||||+|+|.+........|.++.....-.+... ....+.++|++|...-.    .+ ....+.+.
T Consensus       156 ~~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~-~~~~~~i~D~PGli~~a~~~~gLg~~flrhie  234 (329)
T TIGR02729       156 LLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVD-DGRSFVIADIPGLIEGASEGAGLGHRFLKHIE  234 (329)
T ss_pred             ccccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeC-CceEEEEEeCCCcccCCcccccHHHHHHHHHH
Confidence            34579999999999999999999876443333433333444445555 44677889999963211    11 11345677


Q ss_pred             cCCEEEEEEeCCCh---hhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeec
Q 006490          497 SCDVTIFVYDSSDE---YSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMK  573 (643)
Q Consensus       497 ~ad~illv~D~s~~---~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~  573 (643)
                      .||++++|+|+++.   .+++....|..++..+.... .++|+++|+||+|+.......+..+.+++.++.. ++++||+
T Consensus       235 rad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l-~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~~~~~-vi~iSAk  312 (329)
T TIGR02729       235 RTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPEL-AEKPRIVVLNKIDLLDEEELAELLKELKKALGKP-VFPISAL  312 (329)
T ss_pred             hhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhh-ccCCEEEEEeCccCCChHHHHHHHHHHHHHcCCc-EEEEEcc
Confidence            89999999999976   67777778887776653211 1689999999999976544455566677777765 9999999


Q ss_pred             cC-CHHHHHHHHHHHH
Q 006490          574 SK-DLNNVFSRIIWAA  588 (643)
Q Consensus       574 ~g-~i~~l~~~l~~~~  588 (643)
                      ++ |++++++++.+.+
T Consensus       313 tg~GI~eL~~~I~~~l  328 (329)
T TIGR02729       313 TGEGLDELLYALAELL  328 (329)
T ss_pred             CCcCHHHHHHHHHHHh
Confidence            99 9999999998754

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>PRK11058 GTPase HflX; Provisional

Probab=99.78  E-value=5.4e-18  Score=179.04  Aligned_cols=159  Identities=15%  Similarity=0.116  Sum_probs=111.6

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhh------hhhhccHHhhc
Q 006490          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV------KKILSNKEALA  496 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~------~~~~~~~~~~~  496 (643)
                      ..+|+|+|.||||||||+|+|++.++.....+.++.+.....+.+++ ...+.+|||+|....      +.+.++...++
T Consensus       197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~-~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~  275 (426)
T PRK11058        197 VPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVAD-VGETVLADTVGFIRHLPHDLVAAFKATLQETR  275 (426)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCC-CCeEEEEecCcccccCCHHHHHHHHHHHHHhh
Confidence            36899999999999999999999876643444333344455566663 335678999996321      22334566789


Q ss_pred             cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC-
Q 006490          497 SCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-  575 (643)
Q Consensus       497 ~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g-  575 (643)
                      .||++++|+|++++.+++....|...+..... .  ++|+++|+||+|+......  ...  ....+.+.++++||++| 
T Consensus       276 ~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~-~--~~pvIiV~NKiDL~~~~~~--~~~--~~~~~~~~~v~ISAktG~  348 (426)
T PRK11058        276 QATLLLHVVDAADVRVQENIEAVNTVLEEIDA-H--EIPTLLVMNKIDMLDDFEP--RID--RDEENKPIRVWLSAQTGA  348 (426)
T ss_pred             cCCEEEEEEeCCCccHHHHHHHHHHHHHHhcc-C--CCCEEEEEEcccCCCchhH--HHH--HHhcCCCceEEEeCCCCC
Confidence            99999999999999877766544443333321 1  6899999999999753211  111  11234443588999999 


Q ss_pred             CHHHHHHHHHHHHh
Q 006490          576 DLNNVFSRIIWAAE  589 (643)
Q Consensus       576 ~i~~l~~~l~~~~~  589 (643)
                      |++++++.|.+.+.
T Consensus       349 GIdeL~e~I~~~l~  362 (426)
T PRK11058        349 GIPLLFQALTERLS  362 (426)
T ss_pred             CHHHHHHHHHHHhh
Confidence            99999999998874

>PLN00023 GTP-binding protein; Provisional

Probab=99.77  E-value=3.1e-18  Score=170.27  Aligned_cols=140  Identities=24%  Similarity=0.276  Sum_probs=109.2

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCccc-------------CCceeEEEEeCCCCCcc
Q 006490            8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFY-------------PDRVPVTIIDTSSSLEN   72 (643)
Q Consensus         8 ~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~-------------~~~~~~~i~Dt~G~~~~   72 (643)
                      .....+||+|+|+.|||||||+++|+++.+...+.++.+...  ....+.             ...+.+.||||+|++.+
T Consensus        17 ~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErf   96 (334)
T PLN00023         17 PPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERY   96 (334)
T ss_pred             CCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhh
Confidence            355679999999999999999999999988766555444332  112222             23578999999999999


Q ss_pred             hhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcC-------------CCCcEEEEEecccCCCCCc--cc--h
Q 006490           73 KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLE-------------IKVPIIVAGCKLDLRGDHN--AT--S  135 (643)
Q Consensus        73 ~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~-------------~~~pvilv~NK~D~~~~~~--~~--~  135 (643)
                      ..++..+++++|++|+|||++++.+++.+. .|++.+....             .++|+|||+||+|+...+.  .+  .
T Consensus        97 rsL~~~yyr~AdgiILVyDITdr~SFenL~-kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~  175 (334)
T PLN00023         97 KDCRSLFYSQINGVIFVHDLSQRRTKTSLQ-KWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGN  175 (334)
T ss_pred             hhhhHHhccCCCEEEEEEeCCCHHHHHHHH-HHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccc
Confidence            999999999999999999999999999998 5999997642             2589999999999975432  10  1


Q ss_pred             hhhhhhHHHHhhc
Q 006490          136 LEEVMGPIMQQFR  148 (643)
Q Consensus       136 ~~~~~~~~~~~~~  148 (643)
                      ..+..+.++++.+
T Consensus       176 ~~e~a~~~A~~~g  188 (334)
T PLN00023        176 LVDAARQWVEKQG  188 (334)
T ss_pred             cHHHHHHHHHHcC
Confidence            3456677777765

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.77  E-value=3.8e-18  Score=176.24  Aligned_cols=152  Identities=20%  Similarity=0.190  Sum_probs=106.3

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCCC-CCeeeCCcccCCceeEEEEeCCCCCc--chhhhH------Hhh
Q 006490           11 TGVRVVVVGDRGTGKSSLIAAAATESV-PEKVPPVH-APTRLPPDFYPDRVPVTIIDTSSSLE--NKGKLN------EEL   80 (643)
Q Consensus        11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~--~~~~~~------~~~   80 (643)
                      ..++|+|+|.||||||||+|+|++..+ +.+.++++ ..+.....+ .++..+.+|||+|+..  .....+      ..+
T Consensus       188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~-~~~~~i~l~DT~G~~~~l~~~lie~f~~tle~~  266 (351)
T TIGR03156       188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDL-PDGGEVLLTDTVGFIRDLPHELVAAFRATLEEV  266 (351)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEe-CCCceEEEEecCcccccCCHHHHHHHHHHHHHH
Confidence            448999999999999999999999873 33443322 222222222 2456899999999832  111111      357


Q ss_pred             ccCCEEEEEEECCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcc
Q 006490           81 KRADAVVLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT  159 (643)
Q Consensus        81 ~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  159 (643)
                      .+||++|+|+|++++.+.+.+. .|...++... .++|+++|+||+|+......       ..+...   ..+++++||+
T Consensus       267 ~~ADlil~VvD~s~~~~~~~~~-~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~v-------~~~~~~---~~~~i~iSAk  335 (351)
T TIGR03156       267 READLLLHVVDASDPDREEQIE-AVEKVLEELGAEDIPQLLVYNKIDLLDEPRI-------ERLEEG---YPEAVFVSAK  335 (351)
T ss_pred             HhCCEEEEEEECCCCchHHHHH-HHHHHHHHhccCCCCEEEEEEeecCCChHhH-------HHHHhC---CCCEEEEEcc
Confidence            8999999999999998877765 3666666543 37899999999998643211       111111   1258999999


Q ss_pred             cCCChhHHHHHHHHH
Q 006490          160 TMIQVPDVFYYAQKA  174 (643)
Q Consensus       160 ~~~gi~~l~~~i~~~  174 (643)
                      +|.|++++++.+.+.
T Consensus       336 tg~GI~eL~~~I~~~  350 (351)
T TIGR03156       336 TGEGLDLLLEAIAER  350 (351)
T ss_pred             CCCCHHHHHHHHHhh
Confidence            999999999987653

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.77  E-value=1.1e-17  Score=156.91  Aligned_cols=158  Identities=24%  Similarity=0.293  Sum_probs=120.1

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (643)
                      +..+||+++|.+||||||+++++..++... ..||.+  +.+..+...  ...+.+||.+|+..+..+  +..++..+|+
T Consensus        12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g--~~~~~i~~~--~~~~~~~d~gG~~~~~~~--w~~y~~~~~~   84 (175)
T PF00025_consen   12 KKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIG--FNIEEIKYK--GYSLTIWDLGGQESFRPL--WKSYFQNADG   84 (175)
T ss_dssp             TSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESS--EEEEEEEET--TEEEEEEEESSSGGGGGG--GGGGHTTESE
T ss_pred             CcEEEEEEECCCccchHHHHHHhhhccccc-cCcccc--cccceeeeC--cEEEEEEecccccccccc--ceeeccccce
Confidence            567899999999999999999999875443 335554  444555554  466788999999888887  8889999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHH--hC--CC-CcEEeeeccC
Q 006490          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQE--LG--IE-PPIPVSMKSK  575 (643)
Q Consensus       501 illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~--~~--~~-~~~~vSa~~g  575 (643)
                      +|+|+|+++...+.+....+..+.......  ++|+++++||.|+..... .+++......  +.  .. .++.|||++|
T Consensus        85 iIfVvDssd~~~l~e~~~~L~~ll~~~~~~--~~piLIl~NK~D~~~~~~-~~~i~~~l~l~~l~~~~~~~v~~~sa~~g  161 (175)
T PF00025_consen   85 IIFVVDSSDPERLQEAKEELKELLNDPELK--DIPILILANKQDLPDAMS-EEEIKEYLGLEKLKNKRPWSVFSCSAKTG  161 (175)
T ss_dssp             EEEEEETTGGGGHHHHHHHHHHHHTSGGGT--TSEEEEEEESTTSTTSST-HHHHHHHTTGGGTTSSSCEEEEEEBTTTT
T ss_pred             eEEEEecccceeecccccchhhhcchhhcc--cceEEEEeccccccCcch-hhHHHhhhhhhhcccCCceEEEeeeccCC
Confidence            999999999988888888888877654433  799999999999876322 2222222211  11  11 3789999999


Q ss_pred             -CHHHHHHHHHHHH
Q 006490          576 -DLNNVFSRIIWAA  588 (643)
Q Consensus       576 -~i~~l~~~l~~~~  588 (643)
                       |+.+.++||.+++
T Consensus       162 ~Gv~e~l~WL~~~~  175 (175)
T PF00025_consen  162 EGVDEGLEWLIEQI  175 (175)
T ss_dssp             BTHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHhcC
Confidence             9999999998864

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.77  E-value=1.8e-18  Score=156.72  Aligned_cols=135  Identities=18%  Similarity=0.192  Sum_probs=94.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCC-----cchhhhHHhhccCCEEEE
Q 006490           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSL-----ENKGKLNEELKRADAVVL   88 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~-----~~~~~~~~~~~~ad~il~   88 (643)
                      ||+++|++|||||||+|+|++..+.  +.++     ....+.     -.+|||||..     .+.... ..++++|++|+
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t-----~~~~~~-----~~~iDt~G~~~~~~~~~~~~~-~~~~~ad~vil   68 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKT-----QAVEYN-----DGAIDTPGEYVENRRLYSALI-VTAADADVIAL   68 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCccc--cccc-----eeEEEc-----CeeecCchhhhhhHHHHHHHH-HHhhcCCEEEE
Confidence            8999999999999999999988652  2221     111121     1689999973     122222 35789999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHH
Q 006490           89 TYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (643)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  168 (643)
                      |||++++.++...  .|...+     ..|+++|+||+|+.+.. .  ..+....+.+..+. .+++++||++|.|++++|
T Consensus        69 v~d~~~~~s~~~~--~~~~~~-----~~p~ilv~NK~Dl~~~~-~--~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~  137 (142)
T TIGR02528        69 VQSATDPESRFPP--GFASIF-----VKPVIGLVTKIDLAEAD-V--DIERAKELLETAGA-EPIFEISSVDEQGLEALV  137 (142)
T ss_pred             EecCCCCCcCCCh--hHHHhc-----cCCeEEEEEeeccCCcc-c--CHHHHHHHHHHcCC-CcEEEEecCCCCCHHHHH
Confidence            9999999887652  354432     35999999999986422 1  22333455555442 368999999999999999


Q ss_pred             HHHH
Q 006490          169 YYAQ  172 (643)
Q Consensus       169 ~~i~  172 (643)
                      +++.
T Consensus       138 ~~l~  141 (142)
T TIGR02528       138 DYLN  141 (142)
T ss_pred             HHHh
Confidence            8763

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.77  E-value=8.8e-18  Score=154.60  Aligned_cols=155  Identities=18%  Similarity=0.252  Sum_probs=114.5

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCc--eeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDR--VPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (643)
Q Consensus        12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v   89 (643)
                      .+||+++|.+|+|||||+|++++..+.....++.+.......+..++  +.+.+|||||+..+........+.++.++.+
T Consensus         1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~   80 (161)
T TIGR00231         1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV   80 (161)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence            37999999999999999999999885444332222222222233334  7899999999988888888889999999999


Q ss_pred             EECCCc-ccHHHHHHHHHHHHHhcCC-CCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHH
Q 006490           90 YACNQQ-STLSRLSSYWLPELRRLEI-KVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV  167 (643)
Q Consensus        90 ~d~~~~-~s~~~~~~~~~~~l~~~~~-~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  167 (643)
                      +|.... .++......|...+..... +.|+++|+||+|+....    ...........++. .+++++||++|.|+.++
T Consensus        81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~----~~~~~~~~~~~~~~-~~~~~~sa~~~~gv~~~  155 (161)
T TIGR00231        81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK----LKTHVAFLFAKLNG-EPIIPLSAETGKNIDSA  155 (161)
T ss_pred             EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch----hhHHHHHHHhhccC-CceEEeecCCCCCHHHH
Confidence            998877 6666665456666655444 88999999999997543    12223333444443 36999999999999999


Q ss_pred             HHHH
Q 006490          168 FYYA  171 (643)
Q Consensus       168 ~~~i  171 (643)
                      ++++
T Consensus       156 ~~~l  159 (161)
T TIGR00231       156 FKIV  159 (161)
T ss_pred             HHHh
Confidence            9875

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.77  E-value=1.7e-17  Score=143.77  Aligned_cols=160  Identities=21%  Similarity=0.251  Sum_probs=124.8

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (643)
                      ++.++|.|+|..|+||||++++|.+..... ..||.+  +.++.+..+  ...+.+||..|+..+.+.  +..|+..+|+
T Consensus        14 erE~riLiLGLdNsGKTti~~kl~~~~~~~-i~pt~g--f~Iktl~~~--~~~L~iwDvGGq~~lr~~--W~nYfestdg   86 (185)
T KOG0073|consen   14 EREVRILILGLDNSGKTTIVKKLLGEDTDT-ISPTLG--FQIKTLEYK--GYTLNIWDVGGQKTLRSY--WKNYFESTDG   86 (185)
T ss_pred             hheeEEEEEecCCCCchhHHHHhcCCCccc-cCCccc--eeeEEEEec--ceEEEEEEcCCcchhHHH--HHHhhhccCe
Confidence            448999999999999999999999987322 224443  556666554  467788999999999888  9999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-----HHHHHHHHHHhCCCCcEEeeeccC
Q 006490          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-----VQDSARVTQELGIEPPIPVSMKSK  575 (643)
Q Consensus       501 illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-----~~~~~~~~~~~~~~~~~~vSa~~g  575 (643)
                      +|+|+|.+|+..+++....+.++.....-.  +.|+++++||.|+...-..     .-..+++++...++ ++-|||.+|
T Consensus        87 lIwvvDssD~~r~~e~~~~L~~lL~eerla--G~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~-l~~cs~~tg  163 (185)
T KOG0073|consen   87 LIWVVDSSDRMRMQECKQELTELLVEERLA--GAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWR-LVKCSAVTG  163 (185)
T ss_pred             EEEEEECchHHHHHHHHHHHHHHHhhhhhc--CCceEEEEecCcCccccCHHHHHHhhCHHHhccccCce-EEEEecccc
Confidence            999999999999988887777765433223  8999999999999842111     22344555555665 899999999


Q ss_pred             -CHHHHHHHHHHHHhC
Q 006490          576 -DLNNVFSRIIWAAEH  590 (643)
Q Consensus       576 -~i~~l~~~l~~~~~~  590 (643)
                       ++.+-+++|+..+..
T Consensus       164 e~l~~gidWL~~~l~~  179 (185)
T KOG0073|consen  164 EDLLEGIDWLCDDLMS  179 (185)
T ss_pred             ccHHHHHHHHHHHHHH
Confidence             999999999987753

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.76  E-value=1.3e-17  Score=153.99  Aligned_cols=149  Identities=18%  Similarity=0.200  Sum_probs=108.2

Q ss_pred             EEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhh----ccHHhh--ccCCEE
Q 006490          428 LFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKIL----SNKEAL--ASCDVT  501 (643)
Q Consensus       428 ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~----~~~~~~--~~ad~i  501 (643)
                      |+|.+|||||||+|++.+........++++.+.....+.++|  ..+.+|||+|.+.+....    -...++  ..+|++
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v   78 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI   78 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence            589999999999999999874443435444444455566663  467889999986554310    023344  499999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC-CHHHH
Q 006490          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNV  580 (643)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l  580 (643)
                      ++|+|++++..   ...+...+...      ++|+++|+||+|+............+.+.++.+ ++++||++| |++++
T Consensus        79 i~v~d~~~~~~---~~~~~~~~~~~------~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~~iSa~~~~~~~~l  148 (158)
T cd01879          79 VNVVDATNLER---NLYLTLQLLEL------GLPVVVALNMIDEAEKRGIKIDLDKLSELLGVP-VVPTSARKGEGIDEL  148 (158)
T ss_pred             EEEeeCCcchh---HHHHHHHHHHc------CCCEEEEEehhhhcccccchhhHHHHHHhhCCC-eEEEEccCCCCHHHH
Confidence            99999998644   23344444443      799999999999976544444456777777875 999999999 99999


Q ss_pred             HHHHHHHH
Q 006490          581 FSRIIWAA  588 (643)
Q Consensus       581 ~~~l~~~~  588 (643)
                      ++.+.+..
T Consensus       149 ~~~l~~~~  156 (158)
T cd01879         149 KDAIAELA  156 (158)
T ss_pred             HHHHHHHh
Confidence            99998764

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.76  E-value=8.2e-18  Score=164.42  Aligned_cols=166  Identities=25%  Similarity=0.403  Sum_probs=126.9

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCccc--CCceeEEEEeCCCCCcchhhhHHhhccCCEEEE
Q 006490           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFY--PDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (643)
Q Consensus        11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (643)
                      ..+||+++|++|||||||+++|.++.+...++++.+.........  ...+.+.+|||+|++++...++.++.+++++++
T Consensus         4 ~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~   83 (219)
T COG1100           4 KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILI   83 (219)
T ss_pred             ceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEE
Confidence            348999999999999999999999998877665433322221222  226789999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccc----------hhhhhhhHHHHh--hcccceEEE
Q 006490           89 TYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNAT----------SLEEVMGPIMQQ--FREIETCVE  155 (643)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~----------~~~~~~~~~~~~--~~~~~~~~~  155 (643)
                      |+|.++..+..+....|.+.++..+ .+.|+++|+||+|+.......          ............  .... .+++
T Consensus        84 ~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  162 (219)
T COG1100          84 VYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANP-ALLE  162 (219)
T ss_pred             EEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhccc-ceeE
Confidence            9999998888888888999998876 379999999999998764210          011111111111  1122 3899


Q ss_pred             eCcc--cCCChhHHHHHHHHHHhC
Q 006490          156 CSAT--TMIQVPDVFYYAQKAVLH  177 (643)
Q Consensus       156 ~Sa~--~~~gi~~l~~~i~~~~~~  177 (643)
                      +|++  .+.+|.++|..+.+.+..
T Consensus       163 ~s~~~~~~~~v~~~~~~~~~~~~~  186 (219)
T COG1100         163 TSAKSLTGPNVNELFKELLRKLLE  186 (219)
T ss_pred             eecccCCCcCHHHHHHHHHHHHHH
Confidence            9999  999999999999888754

>cd01878 HflX HflX subfamily

Probab=99.76  E-value=6e-18  Score=163.35  Aligned_cols=154  Identities=21%  Similarity=0.177  Sum_probs=105.9

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCC-CCCCeeeCCcccCCceeEEEEeCCCCCcch--hh------hHHh
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATESVP-EKVPP-VHAPTRLPPDFYPDRVPVTIIDTSSSLENK--GK------LNEE   79 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--~~------~~~~   79 (643)
                      ...++|+|+|++|||||||+|++++..+. .+.+. +.........+ .+...+.+|||||+....  ..      ....
T Consensus        39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~  117 (204)
T cd01878          39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRL-PDGREVLLTDTVGFIRDLPHQLVEAFRSTLEE  117 (204)
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEe-cCCceEEEeCCCccccCCCHHHHHHHHHHHHH
Confidence            34579999999999999999999998732 22221 11111111222 223489999999974211  11      1123


Q ss_pred             hccCCEEEEEEECCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCc
Q 006490           80 LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSA  158 (643)
Q Consensus        80 ~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  158 (643)
                      +..+|++++|+|++++.+..... .|.+.++..+ .++|+++|+||+|+...... .      ......  ..+++++||
T Consensus       118 ~~~~d~ii~v~D~~~~~~~~~~~-~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~-~------~~~~~~--~~~~~~~Sa  187 (204)
T cd01878         118 VAEADLLLHVVDASDPDYEEQIE-TVEKVLKELGAEDIPMILVLNKIDLLDDEEL-E------ERLEAG--RPDAVFISA  187 (204)
T ss_pred             HhcCCeEEEEEECCCCChhhHHH-HHHHHHHHcCcCCCCEEEEEEccccCChHHH-H------HHhhcC--CCceEEEEc
Confidence            67899999999999988887765 4777776653 36899999999998754322 1      112222  246899999


Q ss_pred             ccCCChhHHHHHHHHH
Q 006490          159 TTMIQVPDVFYYAQKA  174 (643)
Q Consensus       159 ~~~~gi~~l~~~i~~~  174 (643)
                      ++|.|++++++++.+.
T Consensus       188 ~~~~gi~~l~~~L~~~  203 (204)
T cd01878         188 KTGEGLDELLEAIEEL  203 (204)
T ss_pred             CCCCCHHHHHHHHHhh
Confidence            9999999999988764

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>PRK00089 era GTPase Era; Reviewed

Probab=99.76  E-value=1.5e-17  Score=169.64  Aligned_cols=169  Identities=21%  Similarity=0.287  Sum_probs=114.6

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCCCCCeeeCCcccCCceeEEEEeCCCCCcchh--------hhHHhhc
Q 006490           12 GVRVVVVGDRGTGKSSLIAAAATESVPEK--VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKG--------KLNEELK   81 (643)
Q Consensus        12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~~~   81 (643)
                      .-.|+|+|+||||||||+|+|++..+...  .+.++ ..........++..+.+|||||+.....        ....++.
T Consensus         5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt-~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~   83 (292)
T PRK00089          5 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTT-RHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLK   83 (292)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcc-cccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence            34699999999999999999999885433  22211 1112223334557899999999865332        2235678


Q ss_pred             cCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccC
Q 006490           82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM  161 (643)
Q Consensus        82 ~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  161 (643)
                      .+|++++|+|+++..+..  ...+.+.+...  +.|+++|+||+|+.....  ......+.+...++ ...++++||+++
T Consensus        84 ~~D~il~vvd~~~~~~~~--~~~i~~~l~~~--~~pvilVlNKiDl~~~~~--~l~~~~~~l~~~~~-~~~i~~iSA~~~  156 (292)
T PRK00089         84 DVDLVLFVVDADEKIGPG--DEFILEKLKKV--KTPVILVLNKIDLVKDKE--ELLPLLEELSELMD-FAEIVPISALKG  156 (292)
T ss_pred             cCCEEEEEEeCCCCCChh--HHHHHHHHhhc--CCCEEEEEECCcCCCCHH--HHHHHHHHHHhhCC-CCeEEEecCCCC
Confidence            999999999998843322  22355555543  789999999999974322  13334455554444 357899999999


Q ss_pred             CChhHHHHHHHHHHhCCCCCCCcccccc
Q 006490          162 IQVPDVFYYAQKAVLHPTAPLFDHDEQT  189 (643)
Q Consensus       162 ~gi~~l~~~i~~~~~~~~~~~~~~~~~~  189 (643)
                      .|++++++.+.+.+.. .+++|+.+...
T Consensus       157 ~gv~~L~~~L~~~l~~-~~~~y~~~~~t  183 (292)
T PRK00089        157 DNVDELLDVIAKYLPE-GPPYYPEDQIT  183 (292)
T ss_pred             CCHHHHHHHHHHhCCC-CCCCCCCCCCC
Confidence            9999999999887654 33455554433

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.76  E-value=8.4e-18  Score=160.15  Aligned_cols=159  Identities=19%  Similarity=0.124  Sum_probs=111.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC--------------Cee--eCCcccCCceeEEEEeCCCCCcchhhhH
Q 006490           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA--------------PTR--LPPDFYPDRVPVTIIDTSSSLENKGKLN   77 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~--------------~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~   77 (643)
                      +|+|+|.+|+|||||+|+|++.......+....              .+.  ....+...+..+.+|||||...+...+.
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~   80 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI   80 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence            489999999999999999998876543322110              010  1112233467899999999988878888


Q ss_pred             HhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhc---------
Q 006490           78 EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR---------  148 (643)
Q Consensus        78 ~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~---------  148 (643)
                      .+++.+|++++|+|+....+....  .++..+...  ++|+++|+||+|+..........+.+.+..+..+         
T Consensus        81 ~~~~~~d~~i~v~d~~~~~~~~~~--~~~~~~~~~--~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (189)
T cd00881          81 RGLSVSDGAILVVDANEGVQPQTR--EHLRIAREG--GLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGT  156 (189)
T ss_pred             HHHHhcCEEEEEEECCCCCcHHHH--HHHHHHHHC--CCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhc
Confidence            899999999999998876654433  355555553  8999999999999763221011222233333322         


Q ss_pred             ---ccceEEEeCcccCCChhHHHHHHHHHHh
Q 006490          149 ---EIETCVECSATTMIQVPDVFYYAQKAVL  176 (643)
Q Consensus       149 ---~~~~~~~~Sa~~~~gi~~l~~~i~~~~~  176 (643)
                         ...+++++||++|.|++++++++.+.+.
T Consensus       157 ~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~  187 (189)
T cd00881         157 RNGLLVPIVPGSALTGIGVEELLEAIVEHLP  187 (189)
T ss_pred             ccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence               2357899999999999999999988753

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.76  E-value=2.5e-17  Score=153.76  Aligned_cols=156  Identities=16%  Similarity=0.173  Sum_probs=107.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcC-CCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490          425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQP-GGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~-g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill  503 (643)
                      .|+|+|.+|||||||+|+|.+.++...+.++++.+.....+... +....+.+|||+|++.+..+  +...+..+|++++
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~--~~~~~~~~d~il~   79 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNM--RARGASLTDIAIL   79 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHH--HHHHHhhcCEEEE
Confidence            48999999999999999999988776554433333333344443 13457788999999887776  5667899999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccc--cHHHHHHHHHH----hC-CCCcEEeeeccC-
Q 006490          504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM--AVQDSARVTQE----LG-IEPPIPVSMKSK-  575 (643)
Q Consensus       504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~--~~~~~~~~~~~----~~-~~~~~~vSa~~g-  575 (643)
                      |+|++++...+ ....+..+...      ++|+++|+||+|+.....  .......+...    .+ ..+++++||++| 
T Consensus        80 v~d~~~~~~~~-~~~~~~~~~~~------~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  152 (168)
T cd01887          80 VVAADDGVMPQ-TIEAIKLAKAA------NVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGE  152 (168)
T ss_pred             EEECCCCccHH-HHHHHHHHHHc------CCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCC
Confidence            99999854322 22223333332      799999999999875321  11122222111    11 125899999999 


Q ss_pred             CHHHHHHHHHHHHh
Q 006490          576 DLNNVFSRIIWAAE  589 (643)
Q Consensus       576 ~i~~l~~~l~~~~~  589 (643)
                      |+++++++|.+...
T Consensus       153 gi~~l~~~l~~~~~  166 (168)
T cd01887         153 GIDDLLEAILLLAE  166 (168)
T ss_pred             CHHHHHHHHHHhhh
Confidence            99999999988754

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.76  E-value=2.1e-17  Score=157.74  Aligned_cols=189  Identities=15%  Similarity=0.144  Sum_probs=128.0

Q ss_pred             cccCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhh---------h-
Q 006490          418 QTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK---------K-  487 (643)
Q Consensus       418 ~~~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~---------~-  487 (643)
                      ....+.++|+|+|.||||||||.|.++|.+...++..+.+++..+.-+-+. +...+.++||+|--.-.         + 
T Consensus        67 ~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts-~eTQlvf~DTPGlvs~~~~r~~~l~~s~  145 (379)
T KOG1423|consen   67 EEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITS-GETQLVFYDTPGLVSKKMHRRHHLMMSV  145 (379)
T ss_pred             hhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEec-CceEEEEecCCcccccchhhhHHHHHHh
Confidence            445667999999999999999999999999999998644444444445455 56778889999931111         1 


Q ss_pred             hhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-------------HHH
Q 006490          488 ILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-------------VQD  554 (643)
Q Consensus       488 ~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-------------~~~  554 (643)
                      +.....++..||++++|+|++++...- -...+..+..+.     .+|-++|.||+|....+..             ...
T Consensus       146 lq~~~~a~q~AD~vvVv~Das~tr~~l-~p~vl~~l~~ys-----~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~  219 (379)
T KOG1423|consen  146 LQNPRDAAQNADCVVVVVDASATRTPL-HPRVLHMLEEYS-----KIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKL  219 (379)
T ss_pred             hhCHHHHHhhCCEEEEEEeccCCcCcc-ChHHHHHHHHHh-----cCCceeeccchhcchhhhHHhhhHHhccccccchh
Confidence            123567789999999999999642211 123344444443     7899999999998764322             111


Q ss_pred             HHHHHHHhCC----------------CCcEEeeeccC-CHHHHHHHHHHHHh-CCCCCCCCcccccchh-hhhhhhch
Q 006490          555 SARVTQELGI----------------EPPIPVSMKSK-DLNNVFSRIIWAAE-HPHLNIPETETGRNRK-RYRHLVNS  613 (643)
Q Consensus       555 ~~~~~~~~~~----------------~~~~~vSa~~g-~i~~l~~~l~~~~~-~~~~~~~~~~~~~~~~-~~~~~l~~  613 (643)
                      ..++.++.-.                ..+|.+||++| |++++-++|..++. +|+.+..+..+..+++ -+.+.+++
T Consensus       220 kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y~a~i~T~~s~e~l~~e~VRe  297 (379)
T KOG1423|consen  220 KLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKYPADIVTEESPEFLCSESVRE  297 (379)
T ss_pred             hhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCCCCcccccccCHHHHHHHHHHH
Confidence            2223333222                23899999999 99999999999874 5666666666665555 33343433

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.76  E-value=2.2e-17  Score=172.48  Aligned_cols=170  Identities=15%  Similarity=0.138  Sum_probs=116.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCCCCCeeeCCcccC-CceeEEEEeCCCCCcchh-------hhHHhhccCC
Q 006490           14 RVVVVGDRGTGKSSLIAAAATESV-PEKVPPVHAPTRLPPDFYP-DRVPVTIIDTSSSLENKG-------KLNEELKRAD   84 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~-------~~~~~~~~ad   84 (643)
                      .|+|||.||||||||+|+|++.+. +.++|.++... ....+.. +...+.++||||+.+...       ..-..++++|
T Consensus       161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p-~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~rad  239 (390)
T PRK12298        161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVP-NLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCR  239 (390)
T ss_pred             cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCc-EEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCC
Confidence            699999999999999999998763 33344432222 2222332 345699999999864221       1224688999


Q ss_pred             EEEEEEECC---CcccHHHHHHHHHHHHHhcC---CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCc
Q 006490           85 AVVLTYACN---QQSTLSRLSSYWLPELRRLE---IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSA  158 (643)
Q Consensus        85 ~il~v~d~~---~~~s~~~~~~~~~~~l~~~~---~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  158 (643)
                      ++++|+|++   .....+.+. .|.+++..+.   .++|+++|+||+|+.....   ..+.+..+.+.++...+++++||
T Consensus       240 vlL~VVD~s~~~~~d~~e~~~-~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~e---l~~~l~~l~~~~~~~~~Vi~ISA  315 (390)
T PRK12298        240 VLLHLIDIAPIDGSDPVENAR-IIINELEKYSPKLAEKPRWLVFNKIDLLDEEE---AEERAKAIVEALGWEGPVYLISA  315 (390)
T ss_pred             EEEEEeccCcccccChHHHHH-HHHHHHHhhhhhhcCCCEEEEEeCCccCChHH---HHHHHHHHHHHhCCCCCEEEEEC
Confidence            999999988   445566655 5778777653   3689999999999864322   22334445444432225899999


Q ss_pred             ccCCChhHHHHHHHHHHhCCCCCCCcccccc
Q 006490          159 TTMIQVPDVFYYAQKAVLHPTAPLFDHDEQT  189 (643)
Q Consensus       159 ~~~~gi~~l~~~i~~~~~~~~~~~~~~~~~~  189 (643)
                      +++.|++++++.+.+.+.. .+++|+.+...
T Consensus       316 ~tg~GIdeLl~~I~~~L~~-~~~~~~~~~~t  345 (390)
T PRK12298        316 ASGLGVKELCWDLMTFIEE-NPREEAEEAEA  345 (390)
T ss_pred             CCCcCHHHHHHHHHHHhhh-CcccCCccccc
Confidence            9999999999999987654 34555544443

>PTZ00099 rab6; Provisional

Probab=99.76  E-value=3.2e-17  Score=153.36  Aligned_cols=139  Identities=17%  Similarity=0.258  Sum_probs=117.1

Q ss_pred             CCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHH
Q 006490          446 RPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVAR  525 (643)
Q Consensus       446 ~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~  525 (643)
                      +.|...+.||++.++....+.+.|...++.+|||+|++.+..+  +..++++||++|+|||++++.+|+.+..|+..+..
T Consensus         3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~--~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~   80 (176)
T PTZ00099          3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSL--IPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILN   80 (176)
T ss_pred             CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhc--cHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            3566677789988887777888877888999999999998887  77889999999999999999999999999998876


Q ss_pred             hcCCCCCCCcEEEEEeCCCCCCccc-cHHHHHHHHHHhCCCCcEEeeeccC-CHHHHHHHHHHHHhC
Q 006490          526 LGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-DLNNVFSRIIWAAEH  590 (643)
Q Consensus       526 ~~~~~~~~~pvilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l~~~l~~~~~~  590 (643)
                      ... .  +.|+++|+||+|+...+. ..++...+++.+++. +++|||++| |++++|++|++.+..
T Consensus        81 ~~~-~--~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~-~~e~SAk~g~nV~~lf~~l~~~l~~  143 (176)
T PTZ00099         81 ERG-K--DVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTM-FHETSAKAGHNIKVLFKKIAAKLPN  143 (176)
T ss_pred             hcC-C--CCeEEEEEECcccccccCCCHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHHHHh
Confidence            542 2  689999999999975333 355667778888876 899999999 999999999998754

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.75  E-value=1.4e-17  Score=153.78  Aligned_cols=146  Identities=16%  Similarity=0.152  Sum_probs=102.5

Q ss_pred             EEcCCCCCHHHHHHHHhcCCCCC-CCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchh------hhHHhhc--cCCEEE
Q 006490           17 VVGDRGTGKSSLIAAAATESVPE-KVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKG------KLNEELK--RADAVV   87 (643)
Q Consensus        17 lvG~~~vGKSsL~n~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~------~~~~~~~--~ad~il   87 (643)
                      |+|++|||||||+|++++..+.. ..+++.... ....+...+..+.+|||||+..+..      ....++.  .+|+++
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi   79 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEK-KEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIV   79 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccCCCCccccc-ceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEE
Confidence            58999999999999999886332 233322221 1223334457899999999876543      2445554  999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHH
Q 006490           88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV  167 (643)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  167 (643)
                      +|+|+++.....    .|...+...  ++|+++|+||+|+...... .  .....+...++  .+++++||.+|.|+.++
T Consensus        80 ~v~d~~~~~~~~----~~~~~~~~~--~~~~iiv~NK~Dl~~~~~~-~--~~~~~~~~~~~--~~~~~iSa~~~~~~~~l  148 (158)
T cd01879          80 NVVDATNLERNL----YLTLQLLEL--GLPVVVALNMIDEAEKRGI-K--IDLDKLSELLG--VPVVPTSARKGEGIDEL  148 (158)
T ss_pred             EEeeCCcchhHH----HHHHHHHHc--CCCEEEEEehhhhcccccc-h--hhHHHHHHhhC--CCeEEEEccCCCCHHHH
Confidence            999998754422    355555555  7999999999999765433 1  22345555555  36999999999999999


Q ss_pred             HHHHHHH
Q 006490          168 FYYAQKA  174 (643)
Q Consensus       168 ~~~i~~~  174 (643)
                      ++.+.+.
T Consensus       149 ~~~l~~~  155 (158)
T cd01879         149 KDAIAEL  155 (158)
T ss_pred             HHHHHHH
Confidence            9988765

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.75  E-value=1.8e-17  Score=179.43  Aligned_cols=156  Identities=21%  Similarity=0.230  Sum_probs=109.5

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCcEEEEEEecCCchhhh-----hh-hccHHh
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK-----KI-LSNKEA  494 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~-~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~-----~~-~~~~~~  494 (643)
                      ...+|+|+|+||||||||+|+|++.....+.. |+++.+.....+...|  ..+.+|||+|.+...     .+ ..+..+
T Consensus        37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~  114 (472)
T PRK03003         37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG--RRFTVVDTGGWEPDAKGLQASVAEQAEVA  114 (472)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC--cEEEEEeCCCcCCcchhHHHHHHHHHHHH
Confidence            34689999999999999999999987655444 4433333344445543  357789999965211     11 114567


Q ss_pred             hccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeecc
Q 006490          495 LASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKS  574 (643)
Q Consensus       495 ~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~  574 (643)
                      ++.||++|+|+|++++.++. ...+...+...      ++|+++|+||+|+....  .+. .+ ...+++..+++|||++
T Consensus       115 ~~~aD~il~VvD~~~~~s~~-~~~i~~~l~~~------~~piilV~NK~Dl~~~~--~~~-~~-~~~~g~~~~~~iSA~~  183 (472)
T PRK03003        115 MRTADAVLFVVDATVGATAT-DEAVARVLRRS------GKPVILAANKVDDERGE--ADA-AA-LWSLGLGEPHPVSALH  183 (472)
T ss_pred             HHhCCEEEEEEECCCCCCHH-HHHHHHHHHHc------CCCEEEEEECccCCccc--hhh-HH-HHhcCCCCeEEEEcCC
Confidence            89999999999999986644 24444444433      79999999999986432  111 12 2245665568999999


Q ss_pred             C-CHHHHHHHHHHHHhC
Q 006490          575 K-DLNNVFSRIIWAAEH  590 (643)
Q Consensus       575 g-~i~~l~~~l~~~~~~  590 (643)
                      | |++++|+.+.+.+..
T Consensus       184 g~gi~eL~~~i~~~l~~  200 (472)
T PRK03003        184 GRGVGDLLDAVLAALPE  200 (472)
T ss_pred             CCCcHHHHHHHHhhccc
Confidence            9 999999999987743

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.75  E-value=2e-17  Score=158.18  Aligned_cols=149  Identities=15%  Similarity=0.156  Sum_probs=100.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc--CCCCCCCC--C----------CCCCee--eCCcccCCceeEEEEeCCCCCcchhhhH
Q 006490           14 RVVVVGDRGTGKSSLIAAAAT--ESVPEKVP--P----------VHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLN   77 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~--~~~~~~~~--~----------~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~   77 (643)
                      +|+++|++|||||||+++|+.  ..+.....  .          ..+.+.  ....+..+++.+.+|||||++++...+.
T Consensus         4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~   83 (194)
T cd01891           4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEVE   83 (194)
T ss_pred             EEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHHH
Confidence            699999999999999999997  44433321  0          011111  2223455678999999999999988899


Q ss_pred             HhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhc----c-cce
Q 006490           78 EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR----E-IET  152 (643)
Q Consensus        78 ~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~----~-~~~  152 (643)
                      .+++.+|++++|||+++... .... .++..+...  ++|+++|+||+|+...... ...+.+..+...++    . -.+
T Consensus        84 ~~~~~~d~~ilV~d~~~~~~-~~~~-~~~~~~~~~--~~p~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  158 (194)
T cd01891          84 RVLSMVDGVLLLVDASEGPM-PQTR-FVLKKALEL--GLKPIVVINKIDRPDARPE-EVVDEVFDLFIELGATEEQLDFP  158 (194)
T ss_pred             HHHHhcCEEEEEEECCCCcc-HHHH-HHHHHHHHc--CCCEEEEEECCCCCCCCHH-HHHHHHHHHHHHhCCccccCccC
Confidence            99999999999999987432 2222 344554444  7899999999999654321 12222333332221    0 136


Q ss_pred             EEEeCcccCCChhHH
Q 006490          153 CVECSATTMIQVPDV  167 (643)
Q Consensus       153 ~~~~Sa~~~~gi~~l  167 (643)
                      ++++||++|.|+.++
T Consensus       159 iv~~Sa~~g~~~~~~  173 (194)
T cd01891         159 VLYASAKNGWASLNL  173 (194)
T ss_pred             EEEeehhcccccccc
Confidence            899999999888554

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.75  E-value=4.2e-17  Score=150.07  Aligned_cols=156  Identities=24%  Similarity=0.379  Sum_probs=118.6

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill  503 (643)
                      +||+++|.+|+|||||+|++.+..+...+.++++.++....+...+....+.+||++|+..+..+  .....+.++.++.
T Consensus         2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~--~~~~~~~~~~~i~   79 (161)
T TIGR00231         2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAI--RRLYYRAVESSLR   79 (161)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHH--HHHHHhhhhEEEE
Confidence            69999999999999999999999866666567766666655666543366788999998877776  5667788999999


Q ss_pred             EEeCCCh-hhHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC-CHHHH
Q 006490          504 VYDSSDE-YSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNV  580 (643)
Q Consensus       504 v~D~s~~-~s~~~~~-~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l  580 (643)
                      ++|.... .++.... .+...+......   +.|+++|+||+|+.... ............+..+++++||++| |+.++
T Consensus        80 ~~d~~~~v~~~~~~~~~~~~~~~~~~~~---~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~  155 (161)
T TIGR00231        80 VFDIVILVLDVEEILEKQTKEIIHHAES---NVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSA  155 (161)
T ss_pred             EEEEeeeehhhhhHhHHHHHHHHHhccc---CCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCHHHH
Confidence            9999876 6666555 566666555432   68999999999997644 2333444445555556999999999 99999


Q ss_pred             HHHHH
Q 006490          581 FSRII  585 (643)
Q Consensus       581 ~~~l~  585 (643)
                      ++.|.
T Consensus       156 ~~~l~  160 (161)
T TIGR00231       156 FKIVE  160 (161)
T ss_pred             HHHhh
Confidence            98863

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd01895 EngA2 EngA2 subfamily

Probab=99.75  E-value=3.5e-17  Score=153.33  Aligned_cols=157  Identities=21%  Similarity=0.211  Sum_probs=108.0

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchh-----------hhHH
Q 006490           12 GVRVVVVGDRGTGKSSLIAAAATESVP--EKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKG-----------KLNE   78 (643)
Q Consensus        12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-----------~~~~   78 (643)
                      .++|+++|++|+|||||+|+|++..+.  ...+++.... ....+..++..+.+|||||..+...           ....
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~   80 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDS-IDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLK   80 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCc-eeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHH
Confidence            578999999999999999999987632  2233322111 2223344566789999999754311           1124


Q ss_pred             hhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcc--cceEEEe
Q 006490           79 ELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE--IETCVEC  156 (643)
Q Consensus        79 ~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  156 (643)
                      +++.+|++++|+|++++.+....  .+...+...  ++|+++|+||+|+...... ..+.....+.+.++.  ..+++++
T Consensus        81 ~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~~--~~~~iiv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  155 (174)
T cd01895          81 AIERADVVLLVIDATEGITEQDL--RIAGLILEE--GKALVIVVNKWDLVEKDSK-TMKEFKKEIRRKLPFLDYAPIVFI  155 (174)
T ss_pred             HHhhcCeEEEEEeCCCCcchhHH--HHHHHHHhc--CCCEEEEEeccccCCccHH-HHHHHHHHHHhhcccccCCceEEE
Confidence            56789999999999988776554  245555544  7899999999998765322 233333444444432  2469999


Q ss_pred             CcccCCChhHHHHHHHHH
Q 006490          157 SATTMIQVPDVFYYAQKA  174 (643)
Q Consensus       157 Sa~~~~gi~~l~~~i~~~  174 (643)
                      ||+++.|++++++.+.+.
T Consensus       156 Sa~~~~~i~~~~~~l~~~  173 (174)
T cd01895         156 SALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             eccCCCCHHHHHHHHHHh
Confidence            999999999999987653

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.75  E-value=2.2e-17  Score=169.12  Aligned_cols=156  Identities=20%  Similarity=0.235  Sum_probs=110.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCCCCCeeeCCcccC-CceeEEEEeCCCCCcch----hhhH---HhhccC
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATESV-PEKVPPVHAPTRLPPDFYP-DRVPVTIIDTSSSLENK----GKLN---EELKRA   83 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~i~Dt~G~~~~~----~~~~---~~~~~a   83 (643)
                      ..|+|||.||||||||+|+|++... +.++|.++...... .+.. +...+.+|||||+.+..    .+..   ..++++
T Consensus       158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig-~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhiera  236 (329)
T TIGR02729       158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLG-VVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERT  236 (329)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEE-EEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence            5799999999999999999998763 23344332221221 2222 34789999999986422    2223   345679


Q ss_pred             CEEEEEEECCCc---ccHHHHHHHHHHHHHhcC---CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeC
Q 006490           84 DAVVLTYACNQQ---STLSRLSSYWLPELRRLE---IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECS  157 (643)
Q Consensus        84 d~il~v~d~~~~---~s~~~~~~~~~~~l~~~~---~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  157 (643)
                      |++|+|+|+++.   .+++.+. .|.+++..+.   .++|+++|+||+|+....   ...+..+.+.+.++  .+++++|
T Consensus       237 d~ll~VvD~s~~~~~~~~e~l~-~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~---~~~~~~~~l~~~~~--~~vi~iS  310 (329)
T TIGR02729       237 RVLLHLIDISPLDGRDPIEDYE-IIRNELKKYSPELAEKPRIVVLNKIDLLDEE---ELAELLKELKKALG--KPVFPIS  310 (329)
T ss_pred             CEEEEEEcCccccccCHHHHHH-HHHHHHHHhhhhhccCCEEEEEeCccCCChH---HHHHHHHHHHHHcC--CcEEEEE
Confidence            999999999976   5677766 4887776653   378999999999987542   12334445555554  3689999


Q ss_pred             cccCCChhHHHHHHHHHH
Q 006490          158 ATTMIQVPDVFYYAQKAV  175 (643)
Q Consensus       158 a~~~~gi~~l~~~i~~~~  175 (643)
                      |+++.|++++++++.+.+
T Consensus       311 Aktg~GI~eL~~~I~~~l  328 (329)
T TIGR02729       311 ALTGEGLDELLYALAELL  328 (329)
T ss_pred             ccCCcCHHHHHHHHHHHh
Confidence            999999999999987653

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>PRK04213 GTP-binding protein; Provisional

Probab=99.75  E-value=8.8e-18  Score=161.83  Aligned_cols=154  Identities=21%  Similarity=0.211  Sum_probs=100.4

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCCCCeeeCCcccCCceeEEEEeCCCCC-----------cchhhhH
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSL-----------ENKGKLN   77 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~-----------~~~~~~~   77 (643)
                      ...++|+++|++|||||||+|+|++..+... .++   .+.....+...  .+.+|||||..           .+...+.
T Consensus         7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~---~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~   81 (201)
T PRK04213          7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPG---VTRKPNHYDWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIV   81 (201)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCc---eeeCceEEeec--ceEEEeCCccccccccCHHHHHHHHHHHH
Confidence            3568999999999999999999998875433 333   22222222222  58999999952           2333333


Q ss_pred             Hhh----ccCCEEEEEEECCCcccHH---------HHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHH
Q 006490           78 EEL----KRADAVVLTYACNQQSTLS---------RLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIM  144 (643)
Q Consensus        78 ~~~----~~ad~il~v~d~~~~~s~~---------~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~  144 (643)
                      .++    ..++++++|+|.+......         .....+...+...  ++|+++|+||+|+....     .+....+.
T Consensus        82 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~p~iiv~NK~Dl~~~~-----~~~~~~~~  154 (201)
T PRK04213         82 RYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLREL--GIPPIVAVNKMDKIKNR-----DEVLDEIA  154 (201)
T ss_pred             HHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHc--CCCeEEEEECccccCcH-----HHHHHHHH
Confidence            343    3467889999876532210         0111234444444  79999999999986532     22344555


Q ss_pred             Hhhccc-------ceEEEeCcccCCChhHHHHHHHHHHh
Q 006490          145 QQFREI-------ETCVECSATTMIQVPDVFYYAQKAVL  176 (643)
Q Consensus       145 ~~~~~~-------~~~~~~Sa~~~~gi~~l~~~i~~~~~  176 (643)
                      +.++..       .+++++||++| |++++++++.+.+.
T Consensus       155 ~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~  192 (201)
T PRK04213        155 ERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLH  192 (201)
T ss_pred             HHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhc
Confidence            555420       14799999999 99999999988754

>cd01894 EngA1 EngA1 subfamily

Probab=99.74  E-value=1.7e-17  Score=152.83  Aligned_cols=146  Identities=18%  Similarity=0.173  Sum_probs=102.9

Q ss_pred             EEEcCCCCCHHHHHHHHhcCC--CCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchh--------hhHHhhccCCE
Q 006490           16 VVVGDRGTGKSSLIAAAATES--VPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKG--------KLNEELKRADA   85 (643)
Q Consensus        16 ~lvG~~~vGKSsL~n~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~~~~ad~   85 (643)
                      +++|.+|||||||+|+|++..  +....+++... .........+..+.+|||||+..+..        .....++.+|+
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~   79 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRD-RIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADV   79 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeC-ceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCE
Confidence            589999999999999999876  33334332211 12223344567899999999887543        33467889999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChh
Q 006490           86 VVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP  165 (643)
Q Consensus        86 il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  165 (643)
                      +++|+|+.+..+....  .+.+.++..  +.|+++|+||+|+......       ......++ ..+++++||++|.|++
T Consensus        80 ii~v~d~~~~~~~~~~--~~~~~~~~~--~~piiiv~nK~D~~~~~~~-------~~~~~~~~-~~~~~~~Sa~~~~gv~  147 (157)
T cd01894          80 ILFVVDGREGLTPADE--EIAKYLRKS--KKPVILVVNKVDNIKEEDE-------AAEFYSLG-FGEPIPISAEHGRGIG  147 (157)
T ss_pred             EEEEEeccccCCccHH--HHHHHHHhc--CCCEEEEEECcccCChHHH-------HHHHHhcC-CCCeEEEecccCCCHH
Confidence            9999998776544442  355566655  6999999999999754211       11222333 2368999999999999


Q ss_pred             HHHHHHHHH
Q 006490          166 DVFYYAQKA  174 (643)
Q Consensus       166 ~l~~~i~~~  174 (643)
                      ++++++.+.
T Consensus       148 ~l~~~l~~~  156 (157)
T cd01894         148 DLLDAILEL  156 (157)
T ss_pred             HHHHHHHhh
Confidence            999998764

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.74  E-value=1.7e-17  Score=152.79  Aligned_cols=141  Identities=17%  Similarity=0.159  Sum_probs=96.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchh----hhHHhhccCCEEEEE
Q 006490           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKG----KLNEELKRADAVVLT   89 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----~~~~~~~~ad~il~v   89 (643)
                      +|+++|++|||||||+|+|.+.....  ..     +....+...    .+|||||+.....    .....++++|++++|
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~~~~--~~-----~~~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v   71 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNYTLA--RK-----TQAVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLIYV   71 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCccC--cc-----ceEEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEEEE
Confidence            69999999999999999988654211  11     111122222    2699999743222    222457899999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHHH
Q 006490           90 YACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY  169 (643)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  169 (643)
                      +|+++..++..   .|+..+   ..++|+++++||+|+...    . .+....+.++.+...+++++||++|.|++++|+
T Consensus        72 ~d~~~~~s~~~---~~~~~~---~~~~~ii~v~nK~Dl~~~----~-~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~  140 (158)
T PRK15467         72 HGANDPESRLP---AGLLDI---GVSKRQIAVISKTDMPDA----D-VAATRKLLLETGFEEPIFELNSHDPQSVQQLVD  140 (158)
T ss_pred             EeCCCcccccC---HHHHhc---cCCCCeEEEEEccccCcc----c-HHHHHHHHHHcCCCCCEEEEECCCccCHHHHHH
Confidence            99998876533   233332   337899999999998542    1 233445555665434799999999999999999


Q ss_pred             HHHHHHh
Q 006490          170 YAQKAVL  176 (643)
Q Consensus       170 ~i~~~~~  176 (643)
                      .+.+.+.
T Consensus       141 ~l~~~~~  147 (158)
T PRK15467        141 YLASLTK  147 (158)
T ss_pred             HHHHhch
Confidence            8877653

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.74  E-value=6.6e-17  Score=171.33  Aligned_cols=168  Identities=18%  Similarity=0.110  Sum_probs=113.6

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchh----hhhh-hccHHhhc
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG----VKKI-LSNKEALA  496 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~----~~~~-~~~~~~~~  496 (643)
                      ....|+|||.||||||||+|+|++....+...|.++.....-.++..  ...+.++|++|...    ...+ .....++.
T Consensus       158 ~~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~--~~~f~laDtPGliegas~g~gLg~~fLrhie  235 (500)
T PRK12296        158 SVADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAG--DTRFTVADVPGLIPGASEGKGLGLDFLRHIE  235 (500)
T ss_pred             ccceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEEC--CeEEEEEECCCCccccchhhHHHHHHHHHHH
Confidence            34689999999999999999999876554333533333444455554  25678899999421    1111 11355678


Q ss_pred             cCCEEEEEEeCCCh----hhHHHHHHHHHHHHHhcCC--------CCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCC
Q 006490          497 SCDVTIFVYDSSDE----YSWKRTKELLVEVARLGED--------SGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGI  564 (643)
Q Consensus       497 ~ad~illv~D~s~~----~s~~~~~~~~~~i~~~~~~--------~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~  564 (643)
                      .||++|+|+|+++.    +.++....+..++..+...        ...++|+|+|+||+|+.+.....+.........++
T Consensus       236 radvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~~~g~  315 (500)
T PRK12296        236 RCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELEARGW  315 (500)
T ss_pred             hcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHHHcCC
Confidence            99999999999852    3444555555555544320        01168999999999997643333333333344566


Q ss_pred             CCcEEeeeccC-CHHHHHHHHHHHHhCCC
Q 006490          565 EPPIPVSMKSK-DLNNVFSRIIWAAEHPH  592 (643)
Q Consensus       565 ~~~~~vSa~~g-~i~~l~~~l~~~~~~~~  592 (643)
                      . +++|||+++ |+++++.+|.+.+....
T Consensus       316 ~-Vf~ISA~tgeGLdEL~~~L~ell~~~r  343 (500)
T PRK12296        316 P-VFEVSAASREGLRELSFALAELVEEAR  343 (500)
T ss_pred             e-EEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence            5 999999999 99999999999875443

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.73  E-value=8.7e-17  Score=153.12  Aligned_cols=156  Identities=16%  Similarity=0.142  Sum_probs=108.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcc--------------cceEEEEEEcCCCcEEEEEEecCCchhhhhhhc
Q 006490          425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTG--------------EQYAVNVVDQPGGNKKTLILQEIPEEGVKKILS  490 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~--------------~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~  490 (643)
                      +|+|+|.+|+|||||+|+|++........++..              ................+.+||++|...+...  
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~--   78 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSE--   78 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHH--
Confidence            489999999999999999999877654422110              1111111222223457788999998776665  


Q ss_pred             cHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc---HHHHHHHHHHhC----
Q 006490          491 NKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA---VQDSARVTQELG----  563 (643)
Q Consensus       491 ~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~---~~~~~~~~~~~~----  563 (643)
                      +..++..+|++++|+|++++.+.. ...++..+...      +.|+++|+||+|+......   .+...+..+..+    
T Consensus        79 ~~~~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~~~~------~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (189)
T cd00881          79 VIRGLSVSDGAILVVDANEGVQPQ-TREHLRIAREG------GLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFIST  151 (189)
T ss_pred             HHHHHHhcCEEEEEEECCCCCcHH-HHHHHHHHHHC------CCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccch
Confidence            677889999999999999876533 33444444432      7999999999999863322   223333333322    


Q ss_pred             ---------CCCcEEeeeccC-CHHHHHHHHHHHHh
Q 006490          564 ---------IEPPIPVSMKSK-DLNNVFSRIIWAAE  589 (643)
Q Consensus       564 ---------~~~~~~vSa~~g-~i~~l~~~l~~~~~  589 (643)
                               ..+++++||++| |++++++++.+.+.
T Consensus       152 ~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~  187 (189)
T cd00881         152 KEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP  187 (189)
T ss_pred             hhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence                     236899999999 99999999998763

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.73  E-value=6.3e-17  Score=148.98  Aligned_cols=145  Identities=23%  Similarity=0.251  Sum_probs=104.4

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhh--------hHHhhc
Q 006490           12 GVRVVVVGDRGTGKSSLIAAAATESVP--EKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGK--------LNEELK   81 (643)
Q Consensus        12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~~~~   81 (643)
                      .++|+++|++|+|||||+|++++..+.  ...+++.... ....+...+.++.+|||||..++...        ....+.
T Consensus         1 ~~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~   79 (157)
T cd04164           1 GIKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDV-IEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIE   79 (157)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccce-EEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence            368999999999999999999988742  3333322221 22234455778999999998754322        225678


Q ss_pred             cCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccC
Q 006490           82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM  161 (643)
Q Consensus        82 ~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  161 (643)
                      .+|++++|+|++++.+...... +..     ..++|+++|+||+|+......         ....  ...+++++||+++
T Consensus        80 ~~~~~v~v~d~~~~~~~~~~~~-~~~-----~~~~~vi~v~nK~D~~~~~~~---------~~~~--~~~~~~~~Sa~~~  142 (157)
T cd04164          80 EADLVLFVIDASRGLDEEDLEI-LEL-----PADKPIIVVLNKSDLLPDSEL---------LSLL--AGKPIIAISAKTG  142 (157)
T ss_pred             hCCEEEEEEECCCCCCHHHHHH-HHh-----hcCCCEEEEEEchhcCCcccc---------cccc--CCCceEEEECCCC
Confidence            9999999999998887776542 222     347999999999998753221         1111  1246999999999


Q ss_pred             CChhHHHHHHHHH
Q 006490          162 IQVPDVFYYAQKA  174 (643)
Q Consensus       162 ~gi~~l~~~i~~~  174 (643)
                      .|++++++++...
T Consensus       143 ~~v~~l~~~l~~~  155 (157)
T cd04164         143 EGLDELKEALLEL  155 (157)
T ss_pred             CCHHHHHHHHHHh
Confidence            9999999988764

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>cd01894 EngA1 EngA1 subfamily

Probab=99.73  E-value=5e-17  Score=149.70  Aligned_cols=147  Identities=20%  Similarity=0.257  Sum_probs=102.0

Q ss_pred             EEEcCCCCCHHHHHHHHhcCCCCC--CCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhh-----hh-ccHHhhccC
Q 006490          427 LLFGPQNAGKSALLNSFLERPFSE--NYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK-----IL-SNKEALASC  498 (643)
Q Consensus       427 ~ivG~~nvGKSSLln~l~~~~~~~--~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~-----~~-~~~~~~~~a  498 (643)
                      +++|.+|||||||+|+|++.....  .+.+++.. .........  ...+.+|||+|......     +. .....++.+
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~-~~~~~~~~~--~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~   77 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRD-RIYGEAEWG--GREFILIDTGGIEPDDEGISKEIREQAELAIEEA   77 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeC-ceeEEEEEC--CeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhC
Confidence            589999999999999999876332  22233333 333334443  35678899999766432     11 134567899


Q ss_pred             CEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC-CH
Q 006490          499 DVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DL  577 (643)
Q Consensus       499 d~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g-~i  577 (643)
                      |++++|+|++++.+... ..+...+...      +.|+++|+||+|+......    ......+++.+++++||++| |+
T Consensus        78 d~ii~v~d~~~~~~~~~-~~~~~~~~~~------~~piiiv~nK~D~~~~~~~----~~~~~~~~~~~~~~~Sa~~~~gv  146 (157)
T cd01894          78 DVILFVVDGREGLTPAD-EEIAKYLRKS------KKPVILVVNKVDNIKEEDE----AAEFYSLGFGEPIPISAEHGRGI  146 (157)
T ss_pred             CEEEEEEeccccCCccH-HHHHHHHHhc------CCCEEEEEECcccCChHHH----HHHHHhcCCCCeEEEecccCCCH
Confidence            99999999988655333 2233333333      7999999999999774322    23344567656899999999 99


Q ss_pred             HHHHHHHHHH
Q 006490          578 NNVFSRIIWA  587 (643)
Q Consensus       578 ~~l~~~l~~~  587 (643)
                      +++++++.+.
T Consensus       147 ~~l~~~l~~~  156 (157)
T cd01894         147 GDLLDAILEL  156 (157)
T ss_pred             HHHHHHHHhh
Confidence            9999999864

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.73  E-value=4.5e-17  Score=149.89  Aligned_cols=138  Identities=18%  Similarity=0.188  Sum_probs=98.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCch-----hhhhhhccHHhhccCC
Q 006490          425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE-----GVKKILSNKEALASCD  499 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~-----~~~~~~~~~~~~~~ad  499 (643)
                      +|+++|++|||||||+|+|.+....  ..+|..       +...+.    .+||++|..     .+..   ....++.||
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~~~--~~~~~~-------v~~~~~----~~iDtpG~~~~~~~~~~~---~~~~~~~ad   66 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNYTL--ARKTQA-------VEFNDK----GDIDTPGEYFSHPRWYHA---LITTLQDVD   66 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCcc--CccceE-------EEECCC----CcccCCccccCCHHHHHH---HHHHHhcCC
Confidence            7999999999999999998876421  111211       122211    158999962     2222   234578999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCC-CcEEeeeccC-CH
Q 006490          500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE-PPIPVSMKSK-DL  577 (643)
Q Consensus       500 ~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~vSa~~g-~i  577 (643)
                      ++++|+|++++.++.  ..|+..+.   .    ++|+++++||+|+...  ..+...++.+..++. |++++||++| |+
T Consensus        67 ~il~v~d~~~~~s~~--~~~~~~~~---~----~~~ii~v~nK~Dl~~~--~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi  135 (158)
T PRK15467         67 MLIYVHGANDPESRL--PAGLLDIG---V----SKRQIAVISKTDMPDA--DVAATRKLLLETGFEEPIFELNSHDPQSV  135 (158)
T ss_pred             EEEEEEeCCCccccc--CHHHHhcc---C----CCCeEEEEEccccCcc--cHHHHHHHHHHcCCCCCEEEEECCCccCH
Confidence            999999999887653  23433321   1    6899999999998652  245566777788863 7999999999 99


Q ss_pred             HHHHHHHHHHHh
Q 006490          578 NNVFSRIIWAAE  589 (643)
Q Consensus       578 ~~l~~~l~~~~~  589 (643)
                      +++|+.+.+...
T Consensus       136 ~~l~~~l~~~~~  147 (158)
T PRK15467        136 QQLVDYLASLTK  147 (158)
T ss_pred             HHHHHHHHHhch
Confidence            999999988775

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.73  E-value=7.4e-17  Score=154.29  Aligned_cols=146  Identities=18%  Similarity=0.202  Sum_probs=98.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc--CCCCCCCC------------CCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhc
Q 006490          425 RCLLFGPQNAGKSALLNSFLE--RPFSENYA------------PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILS  490 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~--~~~~~~~~------------~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~  490 (643)
                      +|+++|.+|||||||+++|++  +.+...+.            ++.+..+........++...+.+||++|++.+...  
T Consensus         4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~--   81 (194)
T cd01891           4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGE--   81 (194)
T ss_pred             EEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHH--
Confidence            799999999999999999997  44332220            11222222233333335667889999999988776  


Q ss_pred             cHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccc--cHHHHHHHHHHh------
Q 006490          491 NKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM--AVQDSARVTQEL------  562 (643)
Q Consensus       491 ~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~--~~~~~~~~~~~~------  562 (643)
                      ...+++.+|++++|+|++++. +.....++..+...      ++|+++|+||+|+.....  ..+...++.+.+      
T Consensus        82 ~~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~~------~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  154 (194)
T cd01891          82 VERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALEL------GLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQ  154 (194)
T ss_pred             HHHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHHc------CCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCcccc
Confidence            678899999999999999753 23334444444332      789999999999965322  123334443322      


Q ss_pred             -CCCCcEEeeeccC-CHHHH
Q 006490          563 -GIEPPIPVSMKSK-DLNNV  580 (643)
Q Consensus       563 -~~~~~~~vSa~~g-~i~~l  580 (643)
                       ++ +++++||++| |+.++
T Consensus       155 ~~~-~iv~~Sa~~g~~~~~~  173 (194)
T cd01891         155 LDF-PVLYASAKNGWASLNL  173 (194)
T ss_pred             Ccc-CEEEeehhcccccccc
Confidence             44 4899999999 87433

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>cd01895 EngA2 EngA2 subfamily

Probab=99.73  E-value=1.4e-16  Score=149.36  Aligned_cols=156  Identities=18%  Similarity=0.203  Sum_probs=106.1

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCcEEEEEEecCCchhh-------hh--hhccH
Q 006490          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV-------KK--ILSNK  492 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~-~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~-------~~--~~~~~  492 (643)
                      +++|+++|.+|+|||||+|+|++......+. +++........+...  ...+.+||++|....       +.  ..+..
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~   79 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYD--GKKYTLIDTAGIRRKGKVEEGIEKYSVLRTL   79 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEEC--CeeEEEEECCCCccccchhccHHHHHHHHHH
Confidence            5789999999999999999999987554443 333222222333333  234678999995322       11  11234


Q ss_pred             HhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcc--ccHHHHHHHHHHhC---CCCc
Q 006490          493 EALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT--MAVQDSARVTQELG---IEPP  567 (643)
Q Consensus       493 ~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~--~~~~~~~~~~~~~~---~~~~  567 (643)
                      ..+..+|++++|+|++++.+.... .+...+...      +.|+++|+||+|+....  ...+..+.+.+.++   ..++
T Consensus        80 ~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~~------~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (174)
T cd01895          80 KAIERADVVLLVIDATEGITEQDL-RIAGLILEE------GKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPI  152 (174)
T ss_pred             HHHhhcCeEEEEEeCCCCcchhHH-HHHHHHHhc------CCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCce
Confidence            567899999999999998775432 333333332      78999999999997652  22333444445444   3469


Q ss_pred             EEeeeccC-CHHHHHHHHHHH
Q 006490          568 IPVSMKSK-DLNNVFSRIIWA  587 (643)
Q Consensus       568 ~~vSa~~g-~i~~l~~~l~~~  587 (643)
                      +++||+++ |++++++.+.+.
T Consensus       153 ~~~Sa~~~~~i~~~~~~l~~~  173 (174)
T cd01895         153 VFISALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             EEEeccCCCCHHHHHHHHHHh
Confidence            99999999 999999998764

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.73  E-value=7.7e-17  Score=169.02  Aligned_cols=154  Identities=18%  Similarity=0.208  Sum_probs=109.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCCCCCeeeCCcccCC-ceeEEEEeCCCCCcch----hhhH---HhhccCC
Q 006490           14 RVVVVGDRGTGKSSLIAAAATESVP-EKVPPVHAPTRLPPDFYPD-RVPVTIIDTSSSLENK----GKLN---EELKRAD   84 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~i~Dt~G~~~~~----~~~~---~~~~~ad   84 (643)
                      .|+|||.||||||||+|+|++.+.. .++|.++..... ..+... +..+.+|||||+.+..    .+..   ..+++++
T Consensus       160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~Pnl-G~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~  238 (424)
T PRK12297        160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNL-GVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTR  238 (424)
T ss_pred             cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEE-EEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCC
Confidence            7999999999999999999987632 234442222111 122222 6789999999985421    2223   3456799


Q ss_pred             EEEEEEECCCc---ccHHHHHHHHHHHHHhcC---CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCc
Q 006490           85 AVVLTYACNQQ---STLSRLSSYWLPELRRLE---IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSA  158 (643)
Q Consensus        85 ~il~v~d~~~~---~s~~~~~~~~~~~l~~~~---~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  158 (643)
                      ++|+|+|+++.   ..++++. .|.+++..+.   .++|+++|+||+|+...      .+..+.+.+.++  .+++++||
T Consensus       239 llI~VID~s~~~~~dp~e~~~-~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~------~e~l~~l~~~l~--~~i~~iSA  309 (424)
T PRK12297        239 VIVHVIDMSGSEGRDPIEDYE-KINKELKLYNPRLLERPQIVVANKMDLPEA------EENLEEFKEKLG--PKVFPISA  309 (424)
T ss_pred             EEEEEEeCCccccCChHHHHH-HHHHHHhhhchhccCCcEEEEEeCCCCcCC------HHHHHHHHHHhC--CcEEEEeC
Confidence            99999999864   5666665 4888887654   37899999999998421      233455555555  36899999


Q ss_pred             ccCCChhHHHHHHHHHHhC
Q 006490          159 TTMIQVPDVFYYAQKAVLH  177 (643)
Q Consensus       159 ~~~~gi~~l~~~i~~~~~~  177 (643)
                      +++.|++++++++.+.+..
T Consensus       310 ~tgeGI~eL~~~L~~~l~~  328 (424)
T PRK12297        310 LTGQGLDELLYAVAELLEE  328 (424)
T ss_pred             CCCCCHHHHHHHHHHHHHh
Confidence            9999999999999887643

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.72  E-value=2.3e-16  Score=154.11  Aligned_cols=161  Identities=25%  Similarity=0.338  Sum_probs=128.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill  503 (643)
                      +||+++|++|||||||+++|.+..+...+.+|....+........+...+..+||++|++.+..+  +..++.+++++++
T Consensus         6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~--~~~y~~~~~~~l~   83 (219)
T COG1100           6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSL--RPEYYRGANGILI   83 (219)
T ss_pred             EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHH--HHHHhcCCCEEEE
Confidence            89999999999999999999999999999888777666666655545677889999999999988  8899999999999


Q ss_pred             EEeCCC-hhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-------------HHHHHHHHHHh--CCCCc
Q 006490          504 VYDSSD-EYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-------------VQDSARVTQEL--GIEPP  567 (643)
Q Consensus       504 v~D~s~-~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-------------~~~~~~~~~~~--~~~~~  567 (643)
                      |+|.++ ..+++....|...+......   +.|+++|+||+|+......             ...........  ....+
T Consensus        84 ~~d~~~~~~~~~~~~~~~~~l~~~~~~---~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (219)
T COG1100          84 VYDSTLRESSDELTEEWLEELRELAPD---DVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPAL  160 (219)
T ss_pred             EEecccchhhhHHHHHHHHHHHHhCCC---CceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccce
Confidence            999998 55566667788888876542   6899999999999875321             11111111111  12238


Q ss_pred             EEeeec--cC-CHHHHHHHHHHHHh
Q 006490          568 IPVSMK--SK-DLNNVFSRIIWAAE  589 (643)
Q Consensus       568 ~~vSa~--~g-~i~~l~~~l~~~~~  589 (643)
                      +++|++  ++ ++.++|..+...+.
T Consensus       161 ~~~s~~~~~~~~v~~~~~~~~~~~~  185 (219)
T COG1100         161 LETSAKSLTGPNVNELFKELLRKLL  185 (219)
T ss_pred             eEeecccCCCcCHHHHHHHHHHHHH
Confidence            999999  88 99999999999874

>cd01889 SelB_euk SelB subfamily

Probab=99.72  E-value=4.2e-17  Score=155.72  Aligned_cols=162  Identities=15%  Similarity=0.102  Sum_probs=102.0

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCC----CCCC----CCCCC-CCeeeCCcc------------cCCceeEEEEeCCCCCc
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATES----VPEK----VPPVH-APTRLPPDF------------YPDRVPVTIIDTSSSLE   71 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~~----~~~~----~~~~~-~~~~~~~~~------------~~~~~~~~i~Dt~G~~~   71 (643)
                      ++|+++|++|||||||+++|++..    +...    .+++. ........+            ...++.+.+|||||+..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            579999999999999999999731    1111    11111 001011111            23377899999999865


Q ss_pred             chhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccc-hhhhhhhHHHHhh---
Q 006490           72 NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNAT-SLEEVMGPIMQQF---  147 (643)
Q Consensus        72 ~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~-~~~~~~~~~~~~~---  147 (643)
                      +.......+..+|++++|+|+++........ .+ ......  ++|+++|+||+|+....... ...+..+.+...+   
T Consensus        81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~-~~-~~~~~~--~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~  156 (192)
T cd01889          81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAE-CL-VIGEIL--CKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKT  156 (192)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHHHHH-HH-HHHHHc--CCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence            5444445567789999999998755444332 12 222333  67999999999987432110 1111112222122   


Q ss_pred             c-ccceEEEeCcccCCChhHHHHHHHHHHhCC
Q 006490          148 R-EIETCVECSATTMIQVPDVFYYAQKAVLHP  178 (643)
Q Consensus       148 ~-~~~~~~~~Sa~~~~gi~~l~~~i~~~~~~~  178 (643)
                      + ...+++++||++|.|+++|++.+...+..|
T Consensus       157 ~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~~  188 (192)
T cd01889         157 RFKNSPIIPVSAKPGGGEAELGKDLNNLIVLP  188 (192)
T ss_pred             CcCCCCEEEEeccCCCCHHHHHHHHHhccccc
Confidence            1 123689999999999999999999887654

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.72  E-value=1e-16  Score=138.90  Aligned_cols=163  Identities=14%  Similarity=0.174  Sum_probs=121.8

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v   89 (643)
                      .++++|.|+|..|+||||+.++|.+.... ...++.+-  .......+++.+++||.+|+......|..|+..+|++|+|
T Consensus        14 erE~riLiLGLdNsGKTti~~kl~~~~~~-~i~pt~gf--~Iktl~~~~~~L~iwDvGGq~~lr~~W~nYfestdglIwv   90 (185)
T KOG0073|consen   14 EREVRILILGLDNSGKTTIVKKLLGEDTD-TISPTLGF--QIKTLEYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLIWV   90 (185)
T ss_pred             hheeEEEEEecCCCCchhHHHHhcCCCcc-ccCCccce--eeEEEEecceEEEEEEcCCcchhHHHHHHhhhccCeEEEE
Confidence            44899999999999999999999998732 22222211  1124456789999999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHh-cCCCCcEEEEEecccCCCCCcc--chhhhhhhHHHHhhcccceEEEeCcccCCChhH
Q 006490           90 YACNQQSTLSRLSSYWLPELRR-LEIKVPIIVAGCKLDLRGDHNA--TSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (643)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~-~~~~~pvilv~NK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  166 (643)
                      +|..++..+++....+...+.. .-.+.|+++++||.|+...-..  +.....++.+.+...  .+.+.|||.+|+++.+
T Consensus        91 vDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~--~~l~~cs~~tge~l~~  168 (185)
T KOG0073|consen   91 VDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHH--WRLVKCSAVTGEDLLE  168 (185)
T ss_pred             EECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccC--ceEEEEeccccccHHH
Confidence            9999998888887655555532 2247999999999999854221  011122333333322  2689999999999999


Q ss_pred             HHHHHHHHHhC
Q 006490          167 VFYYAQKAVLH  177 (643)
Q Consensus       167 l~~~i~~~~~~  177 (643)
                      -++|+...+..
T Consensus       169 gidWL~~~l~~  179 (185)
T KOG0073|consen  169 GIDWLCDDLMS  179 (185)
T ss_pred             HHHHHHHHHHH
Confidence            99999887653

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.72  E-value=4e-17  Score=154.00  Aligned_cols=149  Identities=19%  Similarity=0.173  Sum_probs=97.0

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCc----------chhhhHH
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLE----------NKGKLNE   78 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~   78 (643)
                      .....+|+|+|++|||||||+|+|++..+.....+..+.+.....+..+ ..+.+|||||...          +......
T Consensus        15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   93 (179)
T TIGR03598        15 PDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVN-DGFRLVDLPGYGYAKVSKEEKEKWQKLIEE   93 (179)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeC-CcEEEEeCCCCccccCChhHHHHHHHHHHH
Confidence            4567899999999999999999999986433333333333211111112 2699999999642          1122234


Q ss_pred             hhc---cCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcc---cce
Q 006490           79 ELK---RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE---IET  152 (643)
Q Consensus        79 ~~~---~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~---~~~  152 (643)
                      +++   .+|++++|+|++++.+....  .+...+...  ++|+++|+||+|+.....   .......+.+.++.   -.+
T Consensus        94 ~l~~~~~~~~ii~vvd~~~~~~~~~~--~~~~~~~~~--~~pviiv~nK~D~~~~~~---~~~~~~~i~~~l~~~~~~~~  166 (179)
T TIGR03598        94 YLEKRENLKGVVLLMDIRHPLKELDL--EMLEWLRER--GIPVLIVLTKADKLKKSE---LNKQLKKIKKALKKDADDPS  166 (179)
T ss_pred             HHHhChhhcEEEEEecCCCCCCHHHH--HHHHHHHHc--CCCEEEEEECcccCCHHH---HHHHHHHHHHHHhhccCCCc
Confidence            444   35899999999876655554  345666655  799999999999875322   12223333333332   126


Q ss_pred             EEEeCcccCCChh
Q 006490          153 CVECSATTMIQVP  165 (643)
Q Consensus       153 ~~~~Sa~~~~gi~  165 (643)
                      ++++||++|+|++
T Consensus       167 v~~~Sa~~g~gi~  179 (179)
T TIGR03598       167 VQLFSSLKKTGID  179 (179)
T ss_pred             eEEEECCCCCCCC
Confidence            9999999999984

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>cd04163 Era Era subfamily

Probab=99.72  E-value=8.1e-17  Score=149.70  Aligned_cols=157  Identities=20%  Similarity=0.228  Sum_probs=107.4

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC-CCCCeeeCCcccCCceeEEEEeCCCCCcchh--------hhHHhhc
Q 006490           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPP-VHAPTRLPPDFYPDRVPVTIIDTSSSLENKG--------KLNEELK   81 (643)
Q Consensus        11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~~~   81 (643)
                      ...+|+++|.+|+|||||+|++++.......+. ..........+...+..+.+|||||......        .....+.
T Consensus         2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   81 (168)
T cd04163           2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK   81 (168)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence            357899999999999999999998874322111 1111112233445567899999999865432        2234588


Q ss_pred             cCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccC
Q 006490           82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM  161 (643)
Q Consensus        82 ~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  161 (643)
                      .+|++++|+|++++.+..  ...+...+...  +.|+++|+||+|+......  ..+....+....+ ..+++++|++++
T Consensus        82 ~~d~i~~v~d~~~~~~~~--~~~~~~~~~~~--~~~~iiv~nK~Dl~~~~~~--~~~~~~~~~~~~~-~~~~~~~s~~~~  154 (168)
T cd04163          82 DVDLVLFVVDASEPIGEG--DEFILELLKKS--KTPVILVLNKIDLVKDKED--LLPLLEKLKELGP-FAEIFPISALKG  154 (168)
T ss_pred             hCCEEEEEEECCCccCch--HHHHHHHHHHh--CCCEEEEEEchhccccHHH--HHHHHHHHHhccC-CCceEEEEeccC
Confidence            899999999998872222  22355566555  7899999999998743222  2333444444443 347899999999


Q ss_pred             CChhHHHHHHHHH
Q 006490          162 IQVPDVFYYAQKA  174 (643)
Q Consensus       162 ~gi~~l~~~i~~~  174 (643)
                      .|++++++.+.+.
T Consensus       155 ~~~~~l~~~l~~~  167 (168)
T cd04163         155 ENVDELLEEIVKY  167 (168)
T ss_pred             CChHHHHHHHHhh
Confidence            9999999988654

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.72  E-value=2e-16  Score=165.91  Aligned_cols=162  Identities=17%  Similarity=0.116  Sum_probs=115.0

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchh----hhhh-hccHHhhcc
Q 006490          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG----VKKI-LSNKEALAS  497 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~----~~~~-~~~~~~~~~  497 (643)
                      ...|+|+|.||||||||+|+|++.+..+...|.++.....-.+..+ ....+.++|++|...    ...+ .+....+.+
T Consensus       158 ~adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~-~~~~~~laD~PGliega~~~~gLg~~fLrhier  236 (424)
T PRK12297        158 LADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETD-DGRSFVMADIPGLIEGASEGVGLGHQFLRHIER  236 (424)
T ss_pred             cCcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEe-CCceEEEEECCCCcccccccchHHHHHHHHHhh
Confidence            3479999999999999999999876544333422222333334444 245678899998532    1111 113456778


Q ss_pred             CCEEEEEEeCCCh---hhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeecc
Q 006490          498 CDVTIFVYDSSDE---YSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKS  574 (643)
Q Consensus       498 ad~illv~D~s~~---~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~  574 (643)
                      +|++++|+|+++.   ..++....|..++..+.... .++|+++|+||+|+...   .+..+.+++.++. +++++||++
T Consensus       237 ~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L-~~kP~IVV~NK~DL~~~---~e~l~~l~~~l~~-~i~~iSA~t  311 (424)
T PRK12297        237 TRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRL-LERPQIVVANKMDLPEA---EENLEEFKEKLGP-KVFPISALT  311 (424)
T ss_pred             CCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhc-cCCcEEEEEeCCCCcCC---HHHHHHHHHHhCC-cEEEEeCCC
Confidence            9999999999864   56677777888887664321 17899999999998432   3455667777775 499999999


Q ss_pred             C-CHHHHHHHHHHHHhC
Q 006490          575 K-DLNNVFSRIIWAAEH  590 (643)
Q Consensus       575 g-~i~~l~~~l~~~~~~  590 (643)
                      + |+++++++|.+.+..
T Consensus       312 geGI~eL~~~L~~~l~~  328 (424)
T PRK12297        312 GQGLDELLYAVAELLEE  328 (424)
T ss_pred             CCCHHHHHHHHHHHHHh
Confidence            9 999999999987643

>PRK04213 GTP-binding protein; Provisional

Probab=99.72  E-value=8.5e-17  Score=154.94  Aligned_cols=152  Identities=16%  Similarity=0.152  Sum_probs=102.3

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCC-----------chhhhhhhc
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIP-----------EEGVKKILS  490 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g-----------~~~~~~~~~  490 (643)
                      ..++|+++|++|||||||+|+|.+..+...+.|+++..  ...+...    .+.+|||+|           ++.+..+  
T Consensus         8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~--~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~--   79 (201)
T PRK04213          8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRK--PNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDE--   79 (201)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeC--ceEEeec----ceEEEeCCccccccccCHHHHHHHHHH--
Confidence            35799999999999999999999987654444533322  2223222    467899999           3444443  


Q ss_pred             cHHh----hccCCEEEEEEeCCChhhH----------HHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHH
Q 006490          491 NKEA----LASCDVTIFVYDSSDEYSW----------KRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSA  556 (643)
Q Consensus       491 ~~~~----~~~ad~illv~D~s~~~s~----------~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~  556 (643)
                      +..+    +..++++++|+|++....+          .....+...+...      ++|+++|+||+|+....  .+...
T Consensus        80 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~p~iiv~NK~Dl~~~~--~~~~~  151 (201)
T PRK04213         80 IVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLREL------GIPPIVAVNKMDKIKNR--DEVLD  151 (201)
T ss_pred             HHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHc------CCCeEEEEECccccCcH--HHHHH
Confidence            2233    3456899999998653211          0111222222222      79999999999997543  34566


Q ss_pred             HHHHHhCCC--------CcEEeeeccCCHHHHHHHHHHHHh
Q 006490          557 RVTQELGIE--------PPIPVSMKSKDLNNVFSRIIWAAE  589 (643)
Q Consensus       557 ~~~~~~~~~--------~~~~vSa~~g~i~~l~~~l~~~~~  589 (643)
                      ++++.+++.        +++++||++||+++++++|.+.+.
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~SA~~ggi~~l~~~l~~~~~  192 (201)
T PRK04213        152 EIAERLGLYPPWRQWQDIIAPISAKKGGIEELKEAIRKRLH  192 (201)
T ss_pred             HHHHHhcCCccccccCCcEEEEecccCCHHHHHHHHHHhhc
Confidence            677777751        379999999999999999998764

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=99.72  E-value=3.5e-16  Score=133.52  Aligned_cols=168  Identities=18%  Similarity=0.292  Sum_probs=136.5

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC--CCcccceEEEEEEcC-CCcEEEEEEecCCchhh-hhhhccHHhhcc
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYA--PTTGEQYAVNVVDQP-GGNKKTLILQEIPEEGV-KKILSNKEALAS  497 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~--~t~~~~~~~~~v~~~-g~~~~~~i~d~~g~~~~-~~~~~~~~~~~~  497 (643)
                      ...||+++|..+||||+++..|+.++.....+  ||+.+.+ +-.++++ |-+..+.++||+|-... ..+  -..++.-
T Consensus         8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY-~~svet~rgarE~l~lyDTaGlq~~~~eL--prhy~q~   84 (198)
T KOG3883|consen    8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIY-VASVETDRGAREQLRLYDTAGLQGGQQEL--PRHYFQF   84 (198)
T ss_pred             cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhhe-eEeeecCCChhheEEEeecccccCchhhh--hHhHhcc
Confidence            46799999999999999999999877665544  6777754 4555665 44556778999996554 234  5678899


Q ss_pred             CCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-
Q 006490          498 CDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-  575 (643)
Q Consensus       498 ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-  575 (643)
                      +|++++|||..+++||+.+..+-.+|.+.....  .+|+++++||+|+.++.++ .+.+..|++.-... .++++|... 
T Consensus        85 aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKK--EvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvk-l~eVta~dR~  161 (198)
T KOG3883|consen   85 ADAFVLVYSPMDPESFQRVELLKKEIDKHKDKK--EVPIVVLANKRDRAEPREVDMDVAQIWAKREKVK-LWEVTAMDRP  161 (198)
T ss_pred             CceEEEEecCCCHHHHHHHHHHHHHHhhccccc--cccEEEEechhhcccchhcCHHHHHHHHhhhhee-EEEEEeccch
Confidence            999999999999999999888888888766555  7999999999999876554 77888899888887 899999999 


Q ss_pred             CHHHHHHHHHHHHhCCCCCC
Q 006490          576 DLNNVFSRIIWAAEHPHLNI  595 (643)
Q Consensus       576 ~i~~l~~~l~~~~~~~~~~~  595 (643)
                      .+-+.|..+.....+|....
T Consensus       162 sL~epf~~l~~rl~~pqskS  181 (198)
T KOG3883|consen  162 SLYEPFTYLASRLHQPQSKS  181 (198)
T ss_pred             hhhhHHHHHHHhccCCcccc
Confidence            99999999999887666443

>cd04163 Era Era subfamily

Probab=99.72  E-value=2.1e-16  Score=146.86  Aligned_cols=157  Identities=17%  Similarity=0.195  Sum_probs=107.4

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhh------hccHHhhc
Q 006490          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKI------LSNKEALA  496 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~------~~~~~~~~  496 (643)
                      ..+|+++|.+|+|||||+|++++.+.................+... ....+.+||++|.......      ......+.
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   81 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTD-DDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK   81 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEc-CCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence            4789999999999999999999987655443211111222222222 3456788999996432221      01345678


Q ss_pred             cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC-ccccHHHHHHHHHHhCCCCcEEeeeccC
Q 006490          497 SCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP-YTMAVQDSARVTQELGIEPPIPVSMKSK  575 (643)
Q Consensus       497 ~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~vSa~~g  575 (643)
                      .+|++++|+|++++.+ +....+...+...      +.|+++|+||+|+.. .....+....+....+..+++++|++++
T Consensus        82 ~~d~i~~v~d~~~~~~-~~~~~~~~~~~~~------~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  154 (168)
T cd04163          82 DVDLVLFVVDASEPIG-EGDEFILELLKKS------KTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKG  154 (168)
T ss_pred             hCCEEEEEEECCCccC-chHHHHHHHHHHh------CCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccC
Confidence            9999999999998733 2223334444443      689999999999984 3333455566666665557999999999


Q ss_pred             -CHHHHHHHHHHH
Q 006490          576 -DLNNVFSRIIWA  587 (643)
Q Consensus       576 -~i~~l~~~l~~~  587 (643)
                       |++++++.|.+.
T Consensus       155 ~~~~~l~~~l~~~  167 (168)
T cd04163         155 ENVDELLEEIVKY  167 (168)
T ss_pred             CChHHHHHHHHhh
Confidence             999999998764

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.72  E-value=9.6e-17  Score=173.15  Aligned_cols=160  Identities=18%  Similarity=0.168  Sum_probs=112.8

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCC--CCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhh-----------h
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATESV--PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGK-----------L   76 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-----------~   76 (643)
                      ...++|+++|++|||||||+|+|++...  ....++++... ....+..++..+.+|||||+......           .
T Consensus       170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~-~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~  248 (429)
T TIGR03594       170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDS-IDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRT  248 (429)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECc-EeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHH
Confidence            3458999999999999999999998763  33344432221 22333345668999999997643321           1


Q ss_pred             HHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcc--cceEE
Q 006490           77 NEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE--IETCV  154 (643)
Q Consensus        77 ~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  154 (643)
                      ..+++.+|++|+|+|++++.+..+.  +++..+...  ++|+++|+||+|+... .. ..++....+...+..  ..+++
T Consensus       249 ~~~~~~ad~~ilV~D~~~~~~~~~~--~~~~~~~~~--~~~iiiv~NK~Dl~~~-~~-~~~~~~~~~~~~~~~~~~~~vi  322 (429)
T TIGR03594       249 LKAIERADVVLLVLDATEGITEQDL--RIAGLILEA--GKALVIVVNKWDLVKD-EK-TREEFKKELRRKLPFLDFAPIV  322 (429)
T ss_pred             HHHHHhCCEEEEEEECCCCccHHHH--HHHHHHHHc--CCcEEEEEECcccCCC-HH-HHHHHHHHHHHhcccCCCCceE
Confidence            2478999999999999988777665  366666655  7999999999999721 11 222333334344332  24799


Q ss_pred             EeCcccCCChhHHHHHHHHHHh
Q 006490          155 ECSATTMIQVPDVFYYAQKAVL  176 (643)
Q Consensus       155 ~~Sa~~~~gi~~l~~~i~~~~~  176 (643)
                      ++||++|.|++++|+++.+...
T Consensus       323 ~~SA~~g~~v~~l~~~i~~~~~  344 (429)
T TIGR03594       323 FISALTGQGVDKLLDAIDEVYE  344 (429)
T ss_pred             EEeCCCCCCHHHHHHHHHHHHH
Confidence            9999999999999999887643

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd01889 SelB_euk SelB subfamily

Probab=99.72  E-value=1.1e-16  Score=152.93  Aligned_cols=159  Identities=18%  Similarity=0.177  Sum_probs=101.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCC----CCCCC---CC--CcccceEEEEEEc----------CCCcEEEEEEecCCchh
Q 006490          424 FRCLLFGPQNAGKSALLNSFLERP----FSENY---AP--TTGEQYAVNVVDQ----------PGGNKKTLILQEIPEEG  484 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~~----~~~~~---~~--t~~~~~~~~~v~~----------~g~~~~~~i~d~~g~~~  484 (643)
                      ++|+++|++|+|||||+++|++..    +...+   .+  |....+....+..          .+....+.+||++|+..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            479999999999999999999731    11111   11  2222222222321          12355778899999865


Q ss_pred             hhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHH----HH
Q 006490          485 VKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARV----TQ  560 (643)
Q Consensus       485 ~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~----~~  560 (643)
                      +...  .......+|++++|+|++++.+.+....+. .....      +.|+++|+||+|+..........+++    ..
T Consensus        81 ~~~~--~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~-~~~~~------~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~  151 (192)
T cd01889          81 LIRT--IIGGAQIIDLMLLVVDATKGIQTQTAECLV-IGEIL------CKKLIVVLNKIDLIPEEERERKIEKMKKKLQK  151 (192)
T ss_pred             HHHH--HHHHHhhCCEEEEEEECCCCccHHHHHHHH-HHHHc------CCCEEEEEECcccCCHHHHHHHHHHHHHHHHH
Confidence            4332  345567899999999999865444332222 11111      67999999999997533221122222    22


Q ss_pred             Hh---CC--CCcEEeeeccC-CHHHHHHHHHHHHhCC
Q 006490          561 EL---GI--EPPIPVSMKSK-DLNNVFSRIIWAAEHP  591 (643)
Q Consensus       561 ~~---~~--~~~~~vSa~~g-~i~~l~~~l~~~~~~~  591 (643)
                      .+   +.  .+++++||++| |+++++++|..++..|
T Consensus       152 ~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~~  188 (192)
T cd01889         152 TLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVLP  188 (192)
T ss_pred             HHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhccccc
Confidence            21   12  25899999999 9999999999988644

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>PRK11058 GTPase HflX; Provisional

Probab=99.72  E-value=9.9e-17  Score=169.50  Aligned_cols=154  Identities=16%  Similarity=0.163  Sum_probs=104.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCCCCCee-eCCcccCCceeEEEEeCCCCCcc--hhhhH------Hhhcc
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATESV-PEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLEN--KGKLN------EELKR   82 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~--~~~~~------~~~~~   82 (643)
                      .+|+|+|.||||||||+|+|++... +.+.++++.... ....+ .+...+.+|||+|+...  ...+.      ..++.
T Consensus       198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l-~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~  276 (426)
T PRK11058        198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDV-ADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQ  276 (426)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEe-CCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence            5899999999999999999998773 333443222222 12222 22337899999998432  22222      34688


Q ss_pred             CCEEEEEEECCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccC
Q 006490           83 ADAVVLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM  161 (643)
Q Consensus        83 ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  161 (643)
                      ||++|+|+|++++.+.+.+.. |...+.... .++|+++|+||+|+......     ....  ...+ ...++++||++|
T Consensus       277 ADlIL~VvDaS~~~~~e~l~~-v~~iL~el~~~~~pvIiV~NKiDL~~~~~~-----~~~~--~~~~-~~~~v~ISAktG  347 (426)
T PRK11058        277 ATLLLHVVDAADVRVQENIEA-VNTVLEEIDAHEIPTLLVMNKIDMLDDFEP-----RIDR--DEEN-KPIRVWLSAQTG  347 (426)
T ss_pred             CCEEEEEEeCCCccHHHHHHH-HHHHHHHhccCCCCEEEEEEcccCCCchhH-----HHHH--HhcC-CCceEEEeCCCC
Confidence            999999999999988777642 555554432 37999999999998643111     1111  1111 112588999999


Q ss_pred             CChhHHHHHHHHHHh
Q 006490          162 IQVPDVFYYAQKAVL  176 (643)
Q Consensus       162 ~gi~~l~~~i~~~~~  176 (643)
                      .|++++++++.+.+.
T Consensus       348 ~GIdeL~e~I~~~l~  362 (426)
T PRK11058        348 AGIPLLFQALTERLS  362 (426)
T ss_pred             CCHHHHHHHHHHHhh
Confidence            999999999998764

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.72  E-value=1.8e-17  Score=140.37  Aligned_cols=156  Identities=15%  Similarity=0.226  Sum_probs=123.6

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v   89 (643)
                      ..++.+.++|-.++|||||+|.+..+.+.++.-++.+-.  ...++.+.+.+.+||.||+..+..+++.|++.++++++|
T Consensus        18 k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfn--mrk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~   95 (186)
T KOG0075|consen   18 KEEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFN--MRKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV   95 (186)
T ss_pred             HheeeEEEEeeccCCcceEEEEEeeccchhhhcccccce--eEEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence            456889999999999999999999988877733322221  124667789999999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhc--c----cceEEEeCcccCC
Q 006490           90 YACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR--E----IETCVECSATTMI  162 (643)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~Sa~~~~  162 (643)
                      +|+.+++..+...+++...+.+.. .++|+++.|||.|+...-..       ..+..+++  .    -..|+.+|+++..
T Consensus        96 VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~-------~~li~rmgL~sitdREvcC~siScke~~  168 (186)
T KOG0075|consen   96 VDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSK-------IALIERMGLSSITDREVCCFSISCKEKV  168 (186)
T ss_pred             eecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccH-------HHHHHHhCccccccceEEEEEEEEcCCc
Confidence            999999888888877777775532 48999999999999875322       11222222  1    1268999999999


Q ss_pred             ChhHHHHHHHHH
Q 006490          163 QVPDVFYYAQKA  174 (643)
Q Consensus       163 gi~~l~~~i~~~  174 (643)
                      ||+.+.+|+++.
T Consensus       169 Nid~~~~Wli~h  180 (186)
T KOG0075|consen  169 NIDITLDWLIEH  180 (186)
T ss_pred             cHHHHHHHHHHH
Confidence            999999999875

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.72  E-value=1.5e-17  Score=167.23  Aligned_cols=228  Identities=12%  Similarity=0.101  Sum_probs=145.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCC-----CCCC-CC------------eeeCCcccCCceeEEEEeCCCCCcchhh
Q 006490           14 RVVVVGDRGTGKSSLIAAAATESVPEKV-----PPVH-AP------------TRLPPDFYPDRVPVTIIDTSSSLENKGK   75 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~~~~~~~~-----~~~~-~~------------~~~~~~~~~~~~~~~i~Dt~G~~~~~~~   75 (643)
                      +|+|+|++|+|||||+++|+........     .+.. .+            ......+..+++.+++|||||..++...
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~   80 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE   80 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence            4899999999999999999864322111     1100 00            0011223356788999999998877777


Q ss_pred             hHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEE
Q 006490           76 LNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVE  155 (643)
Q Consensus        76 ~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (643)
                      +..+++.+|++++|+|++........  ..+..+...  ++|+++|+||+|....    ...+.+..+...++...-.+.
T Consensus        81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~--~~~~~~~~~--~~p~iivvNK~D~~~~----~~~~~~~~l~~~~~~~~~~~~  152 (268)
T cd04170          81 TRAALRAADAALVVVSAQSGVEVGTE--KLWEFADEA--GIPRIIFINKMDRERA----DFDKTLAALQEAFGRPVVPLQ  152 (268)
T ss_pred             HHHHHHHCCEEEEEEeCCCCCCHHHH--HHHHHHHHc--CCCEEEEEECCccCCC----CHHHHHHHHHHHhCCCeEEEE
Confidence            88999999999999999887555433  244455555  7899999999998764    244556667777764333566


Q ss_pred             eCcccCCChhHHHHHHHHHHhCCCCC-------CCccccccchHHHHHHHHhhhhhcCCCCCC-----CCChHHHHHHhh
Q 006490          156 CSATTMIQVPDVFYYAQKAVLHPTAP-------LFDHDEQTLKPRCVRALKRIFIICDHDMDG-----ALNDAELNEFQV  223 (643)
Q Consensus       156 ~Sa~~~~gi~~l~~~i~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-----~l~~~el~~~~~  223 (643)
                      ++..+|.|+..+.+.+..........       ................++.+....|..++.     .+..+++.....
T Consensus       153 ip~~~~~~~~~~vd~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~e~~a~~dd~l~e~yl~~~~~~~~~l~~~l~  232 (268)
T cd04170         153 LPIGEGDDFKGVVDLLTEKAYIYSPGAPSEEIEIPEELKEEVAEAREELLEAVAETDDELMEKYLEGGELTEEELHAGLR  232 (268)
T ss_pred             ecccCCCceeEEEEcccCEEEEccCCCcceeccCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhCCCCCCHHHHHHHHH
Confidence            77888989888777665544322110       000000011112223344444444443333     445555433333


Q ss_pred             h----------hcCCCCCHHHHHHHHHHHHhhccCC
Q 006490          224 K----------CFNAPLQPAEIVGVKRVVQEKQHDG  249 (643)
Q Consensus       224 ~----------~~~~~~~~~~~~~~~~~~~~~~~~~  249 (643)
                      +          ++++++...+++.+++.+..+.|+|
T Consensus       233 ~~~~~~~~~pv~~gSa~~~~G~~~ll~~~~~~~p~p  268 (268)
T cd04170         233 RALRAGLLVPVLCGSALTNIGVRELLDALVHLLPSP  268 (268)
T ss_pred             HHHHhCCEEEEEEeeCCCCcCHHHHHHHHHHhCCCC
Confidence            2          6888999999999999999998875

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.71  E-value=3e-17  Score=143.79  Aligned_cols=113  Identities=32%  Similarity=0.432  Sum_probs=84.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCC-CC-CCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490           14 RVVVVGDRGTGKSSLIAAAATESVP-EK-VPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~~~~~-~~-~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v   89 (643)
                      ||+|+|++|||||||+++|++..+. .. .....+.+.  ...........+.+||++|.+.+...+..++..+|++|+|
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv   80 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV   80 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence            7999999999999999999998876 11 111111111  1223334455599999999988877777889999999999


Q ss_pred             EECCCcccHHHHHHH--HHHHHHhcCCCCcEEEEEeccc
Q 006490           90 YACNQQSTLSRLSSY--WLPELRRLEIKVPIIVAGCKLD  126 (643)
Q Consensus        90 ~d~~~~~s~~~~~~~--~~~~l~~~~~~~pvilv~NK~D  126 (643)
                      ||++++.+++.+...  |+..++..+.++|++||+||.|
T Consensus        81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D  119 (119)
T PF08477_consen   81 YDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD  119 (119)
T ss_dssp             EECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred             EcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence            999999999997642  6666676667899999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.71  E-value=9.8e-17  Score=150.91  Aligned_cols=158  Identities=21%  Similarity=0.188  Sum_probs=103.0

Q ss_pred             EEcCCCCCHHHHHHHHhcCCCC-CCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhh----hhhh-ccHHhhccCCEE
Q 006490          428 LFGPQNAGKSALLNSFLERPFS-ENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV----KKIL-SNKEALASCDVT  501 (643)
Q Consensus       428 ivG~~nvGKSSLln~l~~~~~~-~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~----~~~~-~~~~~~~~ad~i  501 (643)
                      |+|++|||||||+|+|.+.+.. ..+..++.. .....+... ....+.+||++|....    +.+. +....++.+|++
T Consensus         1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~-~~~~~~~~~-~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i   78 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLE-PNLGVVEVP-DGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAI   78 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCccccCCCceeec-CcceEEEcC-CCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEE
Confidence            5899999999999999998752 222223322 222223343 1456788999996321    1111 134567889999


Q ss_pred             EEEEeCCCh------hhHHHHHHHHHHHHHhcCC----CCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEee
Q 006490          502 IFVYDSSDE------YSWKRTKELLVEVARLGED----SGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVS  571 (643)
Q Consensus       502 llv~D~s~~------~s~~~~~~~~~~i~~~~~~----~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vS  571 (643)
                      ++|+|++++      .++.....|...+......    ...++|+++|+||+|+....................+++++|
T Consensus        79 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S  158 (176)
T cd01881          79 LHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPIS  158 (176)
T ss_pred             EEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEe
Confidence            999999987      5677777777776543221    001689999999999976443322211112222333599999


Q ss_pred             eccC-CHHHHHHHHHHH
Q 006490          572 MKSK-DLNNVFSRIIWA  587 (643)
Q Consensus       572 a~~g-~i~~l~~~l~~~  587 (643)
                      |+++ |++++++.+...
T Consensus       159 a~~~~gl~~l~~~l~~~  175 (176)
T cd01881         159 AKTEEGLDELIRAIYEL  175 (176)
T ss_pred             hhhhcCHHHHHHHHHhh
Confidence            9999 999999998754

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.71  E-value=5e-17  Score=137.72  Aligned_cols=157  Identities=19%  Similarity=0.293  Sum_probs=127.8

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (643)
                      ...+.+.++|-.|+|||||+|....+.+...-.||.+-+  ...+  ..+.....+||.+|+..+.++  +..+++.+++
T Consensus        18 k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfn--mrk~--tkgnvtiklwD~gGq~rfrsm--WerycR~v~a   91 (186)
T KOG0075|consen   18 KEEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFN--MRKV--TKGNVTIKLWDLGGQPRFRSM--WERYCRGVSA   91 (186)
T ss_pred             HheeeEEEEeeccCCcceEEEEEeeccchhhhcccccce--eEEe--ccCceEEEEEecCCCccHHHH--HHHHhhcCcE
Confidence            456889999999999999999999888777666776643  3333  226778889999999999998  9999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCC-------CcEEeeec
Q 006490          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE-------PPIPVSMK  573 (643)
Q Consensus       501 illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-------~~~~vSa~  573 (643)
                      +++|+|+++++.+...++.+..+.......  ++|+++++||.|+...    -....+..++|+.       -++.+||+
T Consensus        92 ivY~VDaad~~k~~~sr~EL~~LL~k~~l~--gip~LVLGnK~d~~~A----L~~~~li~rmgL~sitdREvcC~siSck  165 (186)
T KOG0075|consen   92 IVYVVDAADPDKLEASRSELHDLLDKPSLT--GIPLLVLGNKIDLPGA----LSKIALIERMGLSSITDREVCCFSISCK  165 (186)
T ss_pred             EEEEeecCCcccchhhHHHHHHHhcchhhc--CCcEEEecccccCccc----ccHHHHHHHhCccccccceEEEEEEEEc
Confidence            999999999988887777777776655554  8999999999998763    2344566677764       26999999


Q ss_pred             cC-CHHHHHHHHHHHHh
Q 006490          574 SK-DLNNVFSRIIWAAE  589 (643)
Q Consensus       574 ~g-~i~~l~~~l~~~~~  589 (643)
                      .. |++-+.++|++...
T Consensus       166 e~~Nid~~~~Wli~hsk  182 (186)
T KOG0075|consen  166 EKVNIDITLDWLIEHSK  182 (186)
T ss_pred             CCccHHHHHHHHHHHhh
Confidence            99 99999999998764

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.71  E-value=7.6e-17  Score=151.68  Aligned_cols=152  Identities=19%  Similarity=0.218  Sum_probs=101.4

Q ss_pred             EEcCCCCCHHHHHHHHhcCCC-CCCCCCCCCCeeeCCcccCC-ceeEEEEeCCCCCcc----hhh---hHHhhccCCEEE
Q 006490           17 VVGDRGTGKSSLIAAAATESV-PEKVPPVHAPTRLPPDFYPD-RVPVTIIDTSSSLEN----KGK---LNEELKRADAVV   87 (643)
Q Consensus        17 lvG~~~vGKSsL~n~l~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~i~Dt~G~~~~----~~~---~~~~~~~ad~il   87 (643)
                      |+|++|||||||+|+|++... ..++++++... ....+... +..+.+|||||+...    ...   ....++.+|+++
T Consensus         1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii   79 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEP-NLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL   79 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCccccCCCceeecC-cceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence            589999999999999999874 23333321111 12223344 788999999997431    112   234578899999


Q ss_pred             EEEECCCc------ccHHHHHHHHHHHHHhcC--------CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceE
Q 006490           88 LTYACNQQ------STLSRLSSYWLPELRRLE--------IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETC  153 (643)
Q Consensus        88 ~v~d~~~~------~s~~~~~~~~~~~l~~~~--------~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (643)
                      +|+|+++.      .+++... .|...+....        .++|+++|+||+|+...... .. ......  .......+
T Consensus        80 ~v~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~-~~~~~~--~~~~~~~~  154 (176)
T cd01881          80 HVVDASEDDDIGGVDPLEDYE-ILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEEL-EE-ELVREL--ALEEGAEV  154 (176)
T ss_pred             EEEeccCCccccccCHHHHHH-HHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHH-HH-HHHHHH--hcCCCCCE
Confidence            99999988      4666655 3666665332        37999999999999754332 11 101111  11222469


Q ss_pred             EEeCcccCCChhHHHHHHHHH
Q 006490          154 VECSATTMIQVPDVFYYAQKA  174 (643)
Q Consensus       154 ~~~Sa~~~~gi~~l~~~i~~~  174 (643)
                      +++||+++.|++++++++...
T Consensus       155 ~~~Sa~~~~gl~~l~~~l~~~  175 (176)
T cd01881         155 VPISAKTEEGLDELIRAIYEL  175 (176)
T ss_pred             EEEehhhhcCHHHHHHHHHhh
Confidence            999999999999999987653

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.71  E-value=1.7e-16  Score=139.09  Aligned_cols=114  Identities=22%  Similarity=0.322  Sum_probs=85.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCC--CCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEE
Q 006490          425 RCLLFGPQNAGKSALLNSFLERPFS--ENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~~~~--~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~il  502 (643)
                      ||+|+|++|||||||+++|++....  ..+.++....+........+....+.+||+.|++.+...  ....+..+|+++
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~--~~~~~~~~d~~i   78 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQ--HQFFLKKADAVI   78 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCT--SHHHHHHSCEEE
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceeccc--ccchhhcCcEEE
Confidence            7999999999999999999998876  122234555566566666655556789999999877665  455689999999


Q ss_pred             EEEeCCChhhHHHHHHH---HHHHHHhcCCCCCCCcEEEEEeCCC
Q 006490          503 FVYDSSDEYSWKRTKEL---LVEVARLGEDSGYGVPCLLIASKDD  544 (643)
Q Consensus       503 lv~D~s~~~s~~~~~~~---~~~i~~~~~~~~~~~pvilv~NK~D  544 (643)
                      +|||++++.|++.+..+   +..+.....    +.|+++|+||.|
T Consensus        79 lv~D~s~~~s~~~~~~~~~~l~~~~~~~~----~~piilv~nK~D  119 (119)
T PF08477_consen   79 LVYDLSDPESLEYLSQLLKWLKNIRKRDK----NIPIILVGNKSD  119 (119)
T ss_dssp             EEEECCGHHHHHHHHHHHHHHHHHHHHSS----CSEEEEEEE-TC
T ss_pred             EEEcCCChHHHHHHHHHHHHHHHHHccCC----CCCEEEEEeccC
Confidence            99999999999987554   555554333    799999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>PTZ00099 rab6; Provisional

Probab=99.71  E-value=1.4e-16  Score=148.98  Aligned_cols=139  Identities=13%  Similarity=0.136  Sum_probs=108.2

Q ss_pred             CCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhc-
Q 006490           36 SVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRL-  112 (643)
Q Consensus        36 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~-  112 (643)
                      .|.+.+.++.+...  ....++...+.+.||||+|++.+...+..++++||++|+|||++++.+++.+. .|+..+... 
T Consensus         4 ~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~-~w~~~i~~~~   82 (176)
T PTZ00099          4 TFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTT-KWIQDILNER   82 (176)
T ss_pred             CcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHH-HHHHHHHHhc
Confidence            45556555554332  33455566789999999999999999999999999999999999999999997 588887553 


Q ss_pred             CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHHHHHHHHHhCCC
Q 006490          113 EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPT  179 (643)
Q Consensus       113 ~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~~~~  179 (643)
                      .++.|++||+||+|+...+.+ ..+ ....+...++  ..+++|||++|.||+++|+++.+.+....
T Consensus        83 ~~~~piilVgNK~DL~~~~~v-~~~-e~~~~~~~~~--~~~~e~SAk~g~nV~~lf~~l~~~l~~~~  145 (176)
T PTZ00099         83 GKDVIIALVGNKTDLGDLRKV-TYE-EGMQKAQEYN--TMFHETSAKAGHNIKVLFKKIAAKLPNLD  145 (176)
T ss_pred             CCCCeEEEEEECcccccccCC-CHH-HHHHHHHHcC--CEEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence            457899999999999765444 333 3445556665  25899999999999999999999876433

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.71  E-value=9.7e-17  Score=157.23  Aligned_cols=204  Identities=15%  Similarity=0.169  Sum_probs=131.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCC-----C-CCCC------------eeeCCcccCCceeEEEEeCCCCCcchhh
Q 006490           14 RVVVVGDRGTGKSSLIAAAATESVPEKVP-----P-VHAP------------TRLPPDFYPDRVPVTIIDTSSSLENKGK   75 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~~~~~~~~~-----~-~~~~------------~~~~~~~~~~~~~~~i~Dt~G~~~~~~~   75 (643)
                      +|+++|++|+|||||+++|+...-.....     + +...            ......+..+++++++|||||+.++...
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~   80 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE   80 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence            48999999999999999998753111100     0 0000            0012234467889999999999998888


Q ss_pred             hHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEE
Q 006490           76 LNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVE  155 (643)
Q Consensus        76 ~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (643)
                      +..+++.+|++++|+|+++.....  ...++..+++.  ++|+++|+||+|+...    ..++.+..+...++.-  +++
T Consensus        81 ~~~~l~~aD~~IlVvd~~~g~~~~--~~~~~~~~~~~--~~P~iivvNK~D~~~a----~~~~~~~~i~~~~~~~--~~~  150 (237)
T cd04168          81 VERSLSVLDGAILVISAVEGVQAQ--TRILWRLLRKL--NIPTIIFVNKIDRAGA----DLEKVYQEIKEKLSSD--IVP  150 (237)
T ss_pred             HHHHHHHhCeEEEEEeCCCCCCHH--HHHHHHHHHHc--CCCEEEEEECccccCC----CHHHHHHHHHHHHCCC--eEE
Confidence            889999999999999998765433  23467777766  7999999999998754    3456677788888742  333


Q ss_pred             eCcccCCChhHHHHHHHHHHhCCCCCCCccccccchHHHHHHHHhhhhhcCCCC-----CCCCChHHHHHHhhh------
Q 006490          156 CSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHDM-----DGALNDAELNEFQVK------  224 (643)
Q Consensus       156 ~Sa~~~~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~~~l~~~el~~~~~~------  224 (643)
                      +.--   ++...+.                .....   ..+.++.+.+..|..+     ++.++.+|+....++      
T Consensus       151 ~~~p---~~~~~~~----------------~~~~~---~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~  208 (237)
T cd04168         151 MQKV---GLAPNIC----------------ETNEI---DDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRK  208 (237)
T ss_pred             EECC---cEeeeee----------------eeeec---cHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCC
Confidence            3211   0000000                00000   0222222222222222     335666666443333      


Q ss_pred             ----hcCCCCCHHHHHHHHHHHHhhccCC
Q 006490          225 ----CFNAPLQPAEIVGVKRVVQEKQHDG  249 (643)
Q Consensus       225 ----~~~~~~~~~~~~~~~~~~~~~~~~~  249 (643)
                          ++++++...+++.+++.+.+++|+|
T Consensus       209 ~~Pv~~gsa~~~~Gv~~ll~~~~~~~p~~  237 (237)
T cd04168         209 VFPVYHGSALKGIGIEELLEGITKLFPTS  237 (237)
T ss_pred             eEEEEEccccCCcCHHHHHHHHHHhcCCC
Confidence                6889999999999999999999875

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.71  E-value=1.9e-16  Score=151.94  Aligned_cols=160  Identities=16%  Similarity=0.144  Sum_probs=103.3

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCc----------chhhhHH
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLE----------NKGKLNE   78 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~   78 (643)
                      .....+|+|+|++|||||||+|+|++..+.....+..+.++.. .+...+..+.||||||+..          +......
T Consensus        21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~-~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~   99 (196)
T PRK00454         21 PDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLI-NFFEVNDKLRLVDLPGYGYAKVSKEEKEKWQKLIEE   99 (196)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEE-EEEecCCeEEEeCCCCCCCcCCCchHHHHHHHHHHH
Confidence            4456889999999999999999999987544434333333311 1111246899999999642          2223334


Q ss_pred             hhcc---CCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEE
Q 006490           79 ELKR---ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVE  155 (643)
Q Consensus        79 ~~~~---ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (643)
                      +++.   ++++++|+|.+.+.+....  .+...+...  ++|+++++||+|+..........+.+.......  ...+++
T Consensus       100 ~~~~~~~~~~~~~v~d~~~~~~~~~~--~i~~~l~~~--~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~--~~~~~~  173 (196)
T PRK00454        100 YLRTRENLKGVVLLIDSRHPLKELDL--QMIEWLKEY--GIPVLIVLTKADKLKKGERKKQLKKVRKALKFG--DDEVIL  173 (196)
T ss_pred             HHHhCccceEEEEEEecCCCCCHHHH--HHHHHHHHc--CCcEEEEEECcccCCHHHHHHHHHHHHHHHHhc--CCceEE
Confidence            4444   4688899998776544332  244455544  789999999999865422101111122222221  236899


Q ss_pred             eCcccCCChhHHHHHHHHHH
Q 006490          156 CSATTMIQVPDVFYYAQKAV  175 (643)
Q Consensus       156 ~Sa~~~~gi~~l~~~i~~~~  175 (643)
                      +||+++.|++++++.+.+.+
T Consensus       174 ~Sa~~~~gi~~l~~~i~~~~  193 (196)
T PRK00454        174 FSSLKKQGIDELRAAIAKWL  193 (196)
T ss_pred             EEcCCCCCHHHHHHHHHHHh
Confidence            99999999999999887654

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.70  E-value=3e-16  Score=148.01  Aligned_cols=148  Identities=16%  Similarity=0.156  Sum_probs=95.4

Q ss_pred             ccCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCch----------hhhhh
Q 006490          419 TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE----------GVKKI  488 (643)
Q Consensus       419 ~~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~----------~~~~~  488 (643)
                      ...+.++|+|+|++|+|||||+|+|++..+...+.++.+.......+..+ .  .+.+||++|..          .+..+
T Consensus        14 ~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~--~~~liDtpG~~~~~~~~~~~~~~~~~   90 (179)
T TIGR03598        14 PPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVN-D--GFRLVDLPGYGYAKVSKEEKEKWQKL   90 (179)
T ss_pred             CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeC-C--cEEEEeCCCCccccCChhHHHHHHHH
Confidence            34567899999999999999999999986433333333332333334433 2  57789999942          22222


Q ss_pred             hccHHhhc---cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc---HHHHHHHHHHh
Q 006490          489 LSNKEALA---SCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA---VQDSARVTQEL  562 (643)
Q Consensus       489 ~~~~~~~~---~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~---~~~~~~~~~~~  562 (643)
                        ...+++   .+|++++|+|++++.+.... .++..+...      +.|+++|+||+|+......   .+.++......
T Consensus        91 --~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~~------~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~  161 (179)
T TIGR03598        91 --IEEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRER------GIPVLIVLTKADKLKKSELNKQLKKIKKALKKD  161 (179)
T ss_pred             --HHHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHHc------CCCEEEEEECcccCCHHHHHHHHHHHHHHHhhc
Confidence              223343   46899999999987554433 333344332      7899999999999754332   23334444444


Q ss_pred             CCC-CcEEeeeccC-CHH
Q 006490          563 GIE-PPIPVSMKSK-DLN  578 (643)
Q Consensus       563 ~~~-~~~~vSa~~g-~i~  578 (643)
                      +.. +++++||++| |++
T Consensus       162 ~~~~~v~~~Sa~~g~gi~  179 (179)
T TIGR03598       162 ADDPSVQLFSSLKKTGID  179 (179)
T ss_pred             cCCCceEEEECCCCCCCC
Confidence            322 5999999999 873

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.70  E-value=3.4e-16  Score=169.00  Aligned_cols=151  Identities=20%  Similarity=0.267  Sum_probs=106.0

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCcEEEEEEecCCchh----hhh-h-hccHHhhc
Q 006490          424 FRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPEEG----VKK-I-LSNKEALA  496 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~-~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~----~~~-~-~~~~~~~~  496 (643)
                      ++|+|+|++|||||||+|+|++.....+.. +.++.+.....+...|  ..+.+|||+|.+.    +.. + .....++.
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~   79 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE   79 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            479999999999999999999987654443 4333334444555553  6778999999865    211 1 11456789


Q ss_pred             cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC-
Q 006490          497 SCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-  575 (643)
Q Consensus       497 ~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g-  575 (643)
                      .||++++|+|++++.+... ......+...      ++|+++|+||+|+....   +...++ ..+++..++++||++| 
T Consensus        80 ~ad~il~vvd~~~~~~~~~-~~~~~~l~~~------~~piilv~NK~D~~~~~---~~~~~~-~~lg~~~~~~iSa~~g~  148 (435)
T PRK00093         80 EADVILFVVDGRAGLTPAD-EEIAKILRKS------NKPVILVVNKVDGPDEE---ADAYEF-YSLGLGEPYPISAEHGR  148 (435)
T ss_pred             hCCEEEEEEECCCCCCHHH-HHHHHHHHHc------CCcEEEEEECccCccch---hhHHHH-HhcCCCCCEEEEeeCCC
Confidence            9999999999998644322 2222233333      78999999999975421   222222 4567766899999999 


Q ss_pred             CHHHHHHHHHHH
Q 006490          576 DLNNVFSRIIWA  587 (643)
Q Consensus       576 ~i~~l~~~l~~~  587 (643)
                      |++++++.+.+.
T Consensus       149 gv~~l~~~I~~~  160 (435)
T PRK00093        149 GIGDLLDAILEE  160 (435)
T ss_pred             CHHHHHHHHHhh
Confidence            999999999883

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.70  E-value=7.6e-17  Score=160.72  Aligned_cols=225  Identities=12%  Similarity=0.089  Sum_probs=139.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCC-----C--------C---CCCCee--eCCcccCCceeEEEEeCCCCCcchhh
Q 006490           14 RVVVVGDRGTGKSSLIAAAATESVPEKV-----P--------P---VHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGK   75 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~~~~~~~~-----~--------~---~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~   75 (643)
                      +|+|+|++|+|||||+++|+...-....     .        +   ..+.+.  ....+.++++.+++|||||..++...
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~   80 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE   80 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence            4899999999999999999743211100     0        0   000111  11233456889999999999888888


Q ss_pred             hHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcc--cceE
Q 006490           76 LNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE--IETC  153 (643)
Q Consensus        76 ~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~--~~~~  153 (643)
                      +..+++.+|++|+|+|+........  ..++..++..  ++|+++++||+|+....    .+.....+...++.  +...
T Consensus        81 ~~~~l~~aD~ailVVDa~~g~~~~t--~~~~~~~~~~--~~p~ivviNK~D~~~a~----~~~~~~~l~~~l~~~~~~~~  152 (270)
T cd01886          81 VERSLRVLDGAVAVFDAVAGVEPQT--ETVWRQADRY--NVPRIAFVNKMDRTGAD----FFRVVEQIREKLGANPVPLQ  152 (270)
T ss_pred             HHHHHHHcCEEEEEEECCCCCCHHH--HHHHHHHHHc--CCCEEEEEECCCCCCCC----HHHHHHHHHHHhCCCceEEE
Confidence            8899999999999999877543332  2466666666  79999999999987532    33444555555543  2246


Q ss_pred             EEeCcccC-CChhHHHHHHHHHHh-CCC--CC------CCccccccchHHHHHHHHhhhhhcCCCCCC-----CCChHHH
Q 006490          154 VECSATTM-IQVPDVFYYAQKAVL-HPT--AP------LFDHDEQTLKPRCVRALKRIFIICDHDMDG-----ALNDAEL  218 (643)
Q Consensus       154 ~~~Sa~~~-~gi~~l~~~i~~~~~-~~~--~~------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-----~l~~~el  218 (643)
                      +++|+..+ .|+-+++.   ..+. +..  ..      ..........+.....++.+.+..|..++.     .++.+|+
T Consensus       153 ~Pisa~~~f~g~vd~~~---~~a~~~~~~~~~~~~~~~ip~~~~~~~~~~r~~l~e~vae~dd~L~e~yl~~~~~~~~el  229 (270)
T cd01886         153 LPIGEEDDFRGVVDLIE---MKALYWDGELGEKIEETEIPEDLLEEAEEAREELIETLAEFDDELMEKYLEGEEITEEEI  229 (270)
T ss_pred             eccccCCCceEEEEccc---cEEEecccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhCCCCCCHHHH
Confidence            88888744 55555543   2111 111  10      000001111122233345555544444433     4555555


Q ss_pred             HHHhhh----------hcCCCCCHHHHHHHHHHHHhhccCC
Q 006490          219 NEFQVK----------CFNAPLQPAEIVGVKRVVQEKQHDG  249 (643)
Q Consensus       219 ~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~  249 (643)
                      ......          ++++++...+++.+++.+..++|+|
T Consensus       230 ~~~l~~~~~~~~~~PV~~gSa~~~~Gi~~lld~i~~~~p~p  270 (270)
T cd01886         230 KAAIRKGTIANKIVPVLCGSAFKNKGVQPLLDAVVDYLPSP  270 (270)
T ss_pred             HHHHHHHHHcCcEEEEEeCcCCCCcCHHHHHHHHHHhcCCC
Confidence            433332          6889999999999999999999875

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>COG2262 HflX GTPases [General function prediction only]

Probab=99.69  E-value=5e-16  Score=155.98  Aligned_cols=166  Identities=22%  Similarity=0.238  Sum_probs=116.5

Q ss_pred             hhccccCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCC------chhhhhh
Q 006490          415 KKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIP------EEGVKKI  488 (643)
Q Consensus       415 ~~~~~~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g------~~~~~~~  488 (643)
                      ++.+.......|+++|.+|+|||||+|+|++...........+-+-..+.+.+++ ....++-||.|      +....++
T Consensus       184 R~~R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AF  262 (411)
T COG2262         184 RKKRSRSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAF  262 (411)
T ss_pred             hhhhcccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHH
Confidence            3334455678999999999999999999998765433332222223344566663 55667788888      4445556


Q ss_pred             hccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcE
Q 006490          489 LSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPI  568 (643)
Q Consensus       489 ~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~  568 (643)
                      ..+......||++++|+|+++|...+.+.....-+.+....   .+|+|+|.||+|+..+..   ....+....+  ..+
T Consensus       263 ksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~---~~p~i~v~NKiD~~~~~~---~~~~~~~~~~--~~v  334 (411)
T COG2262         263 KSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGAD---EIPIILVLNKIDLLEDEE---ILAELERGSP--NPV  334 (411)
T ss_pred             HHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCC---CCCEEEEEecccccCchh---hhhhhhhcCC--CeE
Confidence            66888999999999999999996655554444444443222   689999999999876432   1222222222  479


Q ss_pred             EeeeccC-CHHHHHHHHHHHHh
Q 006490          569 PVSMKSK-DLNNVFSRIIWAAE  589 (643)
Q Consensus       569 ~vSa~~g-~i~~l~~~l~~~~~  589 (643)
                      ++||++| |++.|.+.|.+.+.
T Consensus       335 ~iSA~~~~gl~~L~~~i~~~l~  356 (411)
T COG2262         335 FISAKTGEGLDLLRERIIELLS  356 (411)
T ss_pred             EEEeccCcCHHHHHHHHHHHhh
Confidence            9999999 99999999999875

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.69  E-value=7.6e-16  Score=140.34  Aligned_cols=153  Identities=24%  Similarity=0.359  Sum_probs=110.5

Q ss_pred             EEcCCCCCHHHHHHHHhcCCC-CCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEEEEe
Q 006490          428 LFGPQNAGKSALLNSFLERPF-SENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYD  506 (643)
Q Consensus       428 ivG~~nvGKSSLln~l~~~~~-~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv~D  506 (643)
                      |+|++|+|||||+|++.+... .....+|. ...........+....+.+||++|.......  ....++.+|++++|+|
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--~~~~~~~~~~~i~v~d   77 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSL--RRLYYRGADGIILVYD   77 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhH--HHHHhcCCCEEEEEEE
Confidence            589999999999999999876 34443454 5555555555545677889999998776655  5678899999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHH-HHHHHHhCCCCcEEeeeccC-CHHHHHHHH
Q 006490          507 SSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDS-ARVTQELGIEPPIPVSMKSK-DLNNVFSRI  584 (643)
Q Consensus       507 ~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~-~~~~~~~~~~~~~~vSa~~g-~i~~l~~~l  584 (643)
                      ++++.++.....|...........  +.|+++|+||+|+.......... ..........+++++|++++ |+.+++++|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  155 (157)
T cd00882          78 VTDRESFENVKEWLLLILINKEGE--NIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEEL  155 (157)
T ss_pred             CcCHHHHHHHHHHHHHHHHhhccC--CCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHH
Confidence            999988887777622222221222  89999999999987644332221 22233333345999999999 999999987


Q ss_pred             H
Q 006490          585 I  585 (643)
Q Consensus       585 ~  585 (643)
                      .
T Consensus       156 ~  156 (157)
T cd00882         156 A  156 (157)
T ss_pred             h
Confidence            5

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.69  E-value=1.1e-15  Score=146.66  Aligned_cols=158  Identities=19%  Similarity=0.189  Sum_probs=102.6

Q ss_pred             cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCc----------hhhhhhh
Q 006490          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE----------EGVKKIL  489 (643)
Q Consensus       420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~----------~~~~~~~  489 (643)
                      .+..++|+|+|.+|||||||+|+|++.++...+.++.+....+.....   ...+.+||++|.          +.+..+ 
T Consensus        21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~-   96 (196)
T PRK00454         21 PDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKL-   96 (196)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHH-
Confidence            446689999999999999999999998644444444333333333332   246778999994          222222 


Q ss_pred             ccHHhhc---cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhC--C
Q 006490          490 SNKEALA---SCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELG--I  564 (643)
Q Consensus       490 ~~~~~~~---~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~--~  564 (643)
                       ...+++   .++++++|+|++++.+... ..+...+...      ++|+++++||+|+............+.+.++  .
T Consensus        97 -~~~~~~~~~~~~~~~~v~d~~~~~~~~~-~~i~~~l~~~------~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~  168 (196)
T PRK00454         97 -IEEYLRTRENLKGVVLLIDSRHPLKELD-LQMIEWLKEY------GIPVLIVLTKADKLKKGERKKQLKKVRKALKFGD  168 (196)
T ss_pred             -HHHHHHhCccceEEEEEEecCCCCCHHH-HHHHHHHHHc------CCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcC
Confidence             233343   4578999999987654322 1222223222      7899999999999764433222222333332  2


Q ss_pred             CCcEEeeeccC-CHHHHHHHHHHHHh
Q 006490          565 EPPIPVSMKSK-DLNNVFSRIIWAAE  589 (643)
Q Consensus       565 ~~~~~vSa~~g-~i~~l~~~l~~~~~  589 (643)
                      .+++++||++| |++++++.|.+.+.
T Consensus       169 ~~~~~~Sa~~~~gi~~l~~~i~~~~~  194 (196)
T PRK00454        169 DEVILFSSLKKQGIDELRAAIAKWLA  194 (196)
T ss_pred             CceEEEEcCCCCCHHHHHHHHHHHhc
Confidence            35899999999 99999999987764

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.69  E-value=5.9e-16  Score=142.51  Aligned_cols=147  Identities=21%  Similarity=0.272  Sum_probs=103.0

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCcEEEEEEecCCchhhhh------hhccHHhhc
Q 006490          424 FRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK------ILSNKEALA  496 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~-~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~------~~~~~~~~~  496 (643)
                      ++|+++|++|+|||||+|++.+........ ++++.......+...  ...+.+||++|......      ..+....+.
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~   79 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIG--GIPVRLIDTAGIRETEDEIEKIGIERAREAIE   79 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeC--CEEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence            689999999999999999999987543332 333333333334443  34677899999643321      112445678


Q ss_pred             cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC-
Q 006490          497 SCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-  575 (643)
Q Consensus       497 ~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g-  575 (643)
                      .+|++++|+|++++.+......+..     ..    +.|+++|+||+|+......      ..... ..+++++||+++ 
T Consensus        80 ~~~~~v~v~d~~~~~~~~~~~~~~~-----~~----~~~vi~v~nK~D~~~~~~~------~~~~~-~~~~~~~Sa~~~~  143 (157)
T cd04164          80 EADLVLFVIDASRGLDEEDLEILEL-----PA----DKPIIVVLNKSDLLPDSEL------LSLLA-GKPIIAISAKTGE  143 (157)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHh-----hc----CCCEEEEEEchhcCCcccc------ccccC-CCceEEEECCCCC
Confidence            9999999999998777555443322     11    7999999999999764322      22222 235999999999 


Q ss_pred             CHHHHHHHHHHHH
Q 006490          576 DLNNVFSRIIWAA  588 (643)
Q Consensus       576 ~i~~l~~~l~~~~  588 (643)
                      |+++++++|.+.+
T Consensus       144 ~v~~l~~~l~~~~  156 (157)
T cd04164         144 GLDELKEALLELA  156 (157)
T ss_pred             CHHHHHHHHHHhh
Confidence            9999999988754

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.69  E-value=2.7e-16  Score=159.89  Aligned_cols=228  Identities=21%  Similarity=0.195  Sum_probs=144.9

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHhcCC--CCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCc-chh--------
Q 006490            8 SSRTGVRVVVVGDRGTGKSSLIAAAATES--VPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLE-NKG--------   74 (643)
Q Consensus         8 ~~~~~~kI~lvG~~~vGKSsL~n~l~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~-~~~--------   74 (643)
                      ..+.+++|+|+|+||||||||+|.|...+  ++...||   +|+  +...++.+|+++.+.||+|+.+ ..+        
T Consensus       264 ~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~G---TTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~  340 (531)
T KOG1191|consen  264 RLQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPG---TTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIE  340 (531)
T ss_pred             HhhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCC---cchhhheeEeecCCeEEEEEeccccccccCChhHHHhHH
Confidence            35667999999999999999999999988  4444555   444  7778889999999999999876 222        


Q ss_pred             hhHHhhccCCEEEEEEECC--CcccHHHHHHHHHHHHHhc-------CCCCcEEEEEecccCCCCCccchhhhhhhHHH-
Q 006490           75 KLNEELKRADAVVLTYACN--QQSTLSRLSSYWLPELRRL-------EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIM-  144 (643)
Q Consensus        75 ~~~~~~~~ad~il~v~d~~--~~~s~~~~~~~~~~~l~~~-------~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~-  144 (643)
                      .....+++||++++|+|+.  +-.+...+. ..+......       ....|++++.||.|+...-....... ..... 
T Consensus       341 rA~k~~~~advi~~vvda~~~~t~sd~~i~-~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~-~~~~~~  418 (531)
T KOG1191|consen  341 RARKRIERADVILLVVDAEESDTESDLKIA-RILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIP-VVYPSA  418 (531)
T ss_pred             HHHHHHhhcCEEEEEecccccccccchHHH-HHHHHhccceEEEeccccccceEEEechhhccCccccccCCc-eecccc
Confidence            2236788999999999983  333333322 233333221       12489999999999987522101101 11111 


Q ss_pred             HhhcccceEEEeCcccCCChhHHHHHHHHHHhCCC------CCCCcccccc-chHHHHH-HHHhhhhhcCCCCCCCCChH
Q 006490          145 QQFREIETCVECSATTMIQVPDVFYYAQKAVLHPT------APLFDHDEQT-LKPRCVR-ALKRIFIICDHDMDGALNDA  216 (643)
Q Consensus       145 ~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~~~~------~~~~~~~~~~-~~~~~~~-~l~~~~~~~~~~~~~~l~~~  216 (643)
                      ...+.+....++|+++++|+.+|.+.+.+.+....      ++.....+.. ....|.. .+.+.+...+...|..+..+
T Consensus       419 ~~~~~~~i~~~vs~~tkeg~~~L~~all~~~~~~~~~~~s~~~t~~~~r~~~~~r~~~~~~l~~~~~~k~~~~D~~la~~  498 (531)
T KOG1191|consen  419 EGRSVFPIVVEVSCTTKEGCERLSTALLNIVERLVVSPHSAPPTLSQKRIKELLRTCAAPELERRFLAKQLKEDIDLAGE  498 (531)
T ss_pred             ccCcccceEEEeeechhhhHHHHHHHHHHHHHHhhcCCCCCchhhcchhHHHHHHhhhhhhHHHHHHhhhcccchhhccc
Confidence            12223334677999999999999998888663222      1222222222 2222222 46666666666678888888


Q ss_pred             HHHHHhhhhcCCCCCHHHHHHHHHH
Q 006490          217 ELNEFQVKCFNAPLQPAEIVGVKRV  241 (643)
Q Consensus       217 el~~~~~~~~~~~~~~~~~~~~~~~  241 (643)
                      +++..+...-.... ..+.+.+.+.
T Consensus       499 ~lR~a~~~i~r~tg-gggte~vls~  522 (531)
T KOG1191|consen  499 PLRLAQRSIARITG-GGGTEEVLSS  522 (531)
T ss_pred             hHHHHHhhhcccCC-CCchhhHHHH
Confidence            88877766544443 3444444443

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.69  E-value=3.1e-16  Score=166.27  Aligned_cols=159  Identities=19%  Similarity=0.183  Sum_probs=105.8

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchh----h---hHHhhccC
Q 006490           12 GVRVVVVGDRGTGKSSLIAAAATESVP-EKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKG----K---LNEELKRA   83 (643)
Q Consensus        12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----~---~~~~~~~a   83 (643)
                      ...|+|||.||||||||+|+|++.+.. .++|.++... ....+...+..+.+|||||+.....    +   .-..++.+
T Consensus       159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P-~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhiera  237 (500)
T PRK12296        159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVP-NLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERC  237 (500)
T ss_pred             cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccc-eEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhc
Confidence            357999999999999999999987632 3344432211 2233445567899999999753211    1   12456789


Q ss_pred             CEEEEEEECCCc----ccHHHHHHHHHHHHHhcC------------CCCcEEEEEecccCCCCCccchhhhhhhHHHHhh
Q 006490           84 DAVVLTYACNQQ----STLSRLSSYWLPELRRLE------------IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF  147 (643)
Q Consensus        84 d~il~v~d~~~~----~s~~~~~~~~~~~l~~~~------------~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~  147 (643)
                      |++|+|+|+++.    ..++++. .|..++..+.            .++|+|+|+||+|+......   .+.........
T Consensus       238 dvLv~VVD~s~~e~~rdp~~d~~-~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el---~e~l~~~l~~~  313 (500)
T PRK12296        238 AVLVHVVDCATLEPGRDPLSDID-ALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAREL---AEFVRPELEAR  313 (500)
T ss_pred             CEEEEEECCcccccccCchhhHH-HHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHH---HHHHHHHHHHc
Confidence            999999999753    3444443 2444443332            26899999999998643221   11122222222


Q ss_pred             cccceEEEeCcccCCChhHHHHHHHHHHhC
Q 006490          148 REIETCVECSATTMIQVPDVFYYAQKAVLH  177 (643)
Q Consensus       148 ~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~~  177 (643)
                      +  .+++++||+++.|+++|++++.+.+..
T Consensus       314 g--~~Vf~ISA~tgeGLdEL~~~L~ell~~  341 (500)
T PRK12296        314 G--WPVFEVSAASREGLRELSFALAELVEE  341 (500)
T ss_pred             C--CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            2  368999999999999999999887643

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.69  E-value=2.1e-16  Score=141.36  Aligned_cols=162  Identities=12%  Similarity=0.161  Sum_probs=126.8

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEE
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (643)
                      ...+++|+++|--|+||||++.+|-...++...|++.....   .+...++.|.+||.+|++.....+..|++..+++||
T Consensus        14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vttvPTiGfnVE---~v~ykn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIf   90 (181)
T KOG0070|consen   14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIGFNVE---TVEYKNISFTVWDVGGQEKLRPLWKHYFQNTQGLIF   90 (181)
T ss_pred             CcceEEEEEEeccCCCceeeeEeeccCCcccCCCcccccee---EEEEcceEEEEEecCCCcccccchhhhccCCcEEEE
Confidence            56679999999999999999999999888777665333222   344558999999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccchhh--hhhhHHHHhhcccceEEEeCcccCCChh
Q 006490           89 TYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLE--EVMGPIMQQFREIETCVECSATTMIQVP  165 (643)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  165 (643)
                      |+|.++++.+.....++...+.... .+.|+++.+||.|+...-......  -.+..+...   --.+..|+|.+|+|+.
T Consensus        91 VvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~---~w~iq~~~a~~G~GL~  167 (181)
T KOG0070|consen   91 VVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSR---NWHIQSTCAISGEGLY  167 (181)
T ss_pred             EEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCC---CcEEeeccccccccHH
Confidence            9999999999999887777776543 589999999999998764321111  111111111   1146789999999999


Q ss_pred             HHHHHHHHHHh
Q 006490          166 DVFYYAQKAVL  176 (643)
Q Consensus       166 ~l~~~i~~~~~  176 (643)
                      |.++++...+.
T Consensus       168 egl~wl~~~~~  178 (181)
T KOG0070|consen  168 EGLDWLSNNLK  178 (181)
T ss_pred             HHHHHHHHHHh
Confidence            99999988764

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.68  E-value=6.3e-16  Score=174.10  Aligned_cols=153  Identities=15%  Similarity=0.145  Sum_probs=113.7

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCC-CCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhh----------hHHh
Q 006490           11 TGVRVVVVGDRGTGKSSLIAAAATES-VPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGK----------LNEE   79 (643)
Q Consensus        11 ~~~kI~lvG~~~vGKSsL~n~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~----------~~~~   79 (643)
                      +.++|+++|+||||||||+|+|++.+ .+.++++++. ......+..++.++.+|||||...+...          ...+
T Consensus         2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTv-e~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~   80 (772)
T PRK09554          2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTV-ERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (772)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceE-eeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence            45789999999999999999999876 3445665332 2244456677889999999998765321          1123


Q ss_pred             --hccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeC
Q 006490           80 --LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECS  157 (643)
Q Consensus        80 --~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  157 (643)
                        ...+|++++|+|+++.+...    +|..++.+.  ++|+++|+||+|+.+.+..   ....+.+.+.++  .+++++|
T Consensus        81 l~~~~aD~vI~VvDat~ler~l----~l~~ql~e~--giPvIvVlNK~Dl~~~~~i---~id~~~L~~~LG--~pVvpiS  149 (772)
T PRK09554         81 ILSGDADLLINVVDASNLERNL----YLTLQLLEL--GIPCIVALNMLDIAEKQNI---RIDIDALSARLG--CPVIPLV  149 (772)
T ss_pred             HhccCCCEEEEEecCCcchhhH----HHHHHHHHc--CCCEEEEEEchhhhhccCc---HHHHHHHHHHhC--CCEEEEE
Confidence              24799999999988764422    355566666  7999999999998754433   233566777777  3799999


Q ss_pred             cccCCChhHHHHHHHHHH
Q 006490          158 ATTMIQVPDVFYYAQKAV  175 (643)
Q Consensus       158 a~~~~gi~~l~~~i~~~~  175 (643)
                      |++|+|++++.+.+....
T Consensus       150 A~~g~GIdeL~~~I~~~~  167 (772)
T PRK09554        150 STRGRGIEALKLAIDRHQ  167 (772)
T ss_pred             eecCCCHHHHHHHHHHhh
Confidence            999999999999887754

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.68  E-value=4.5e-16  Score=141.87  Aligned_cols=153  Identities=24%  Similarity=0.290  Sum_probs=108.9

Q ss_pred             EEcCCCCCHHHHHHHHhcCCC-CCCCCCCC-CCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECCC
Q 006490           17 VVGDRGTGKSSLIAAAATESV-PEKVPPVH-APTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQ   94 (643)
Q Consensus        17 lvG~~~vGKSsL~n~l~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~   94 (643)
                      |+|++|+|||||+|++.+... .....++. ............+..+.+||+||+..+.......++.+|++++|+|+++
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~   80 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTD   80 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcC
Confidence            589999999999999999876 33332222 1122333333457889999999988877777888999999999999999


Q ss_pred             cccHHHHHHHH-HHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHHHHHH
Q 006490           95 QSTLSRLSSYW-LPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQ  172 (643)
Q Consensus        95 ~~s~~~~~~~~-~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~  172 (643)
                      +.+.......+ .........++|+++|+||+|+...... .... ......... ..+++++|+.++.|+.++++++.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~-~~~~-~~~~~~~~~-~~~~~~~s~~~~~~i~~~~~~l~  156 (157)
T cd00882          81 RESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVV-SEEE-LAEQLAKEL-GVPYFETSAKTGENVEELFEELA  156 (157)
T ss_pred             HHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccch-HHHH-HHHHHHhhc-CCcEEEEecCCCCChHHHHHHHh
Confidence            98888877421 2222334568999999999998765433 1111 011222222 24799999999999999999875

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.68  E-value=2.2e-16  Score=160.54  Aligned_cols=194  Identities=19%  Similarity=0.150  Sum_probs=126.9

Q ss_pred             cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-C-CcccceEEEEEEcCCCcEEEEEEecCCchh-------hhhhhc
Q 006490          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-P-TTGEQYAVNVVDQPGGNKKTLILQEIPEEG-------VKKILS  490 (643)
Q Consensus       420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~-~-t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~-------~~~~~~  490 (643)
                      .+.+++|+|+|+||||||||+|+|.+.++.++++ | ||++ .....++++|  .++.+.||+|-.+       ...+.+
T Consensus       265 lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRD-aiea~v~~~G--~~v~L~DTAGiRe~~~~~iE~~gI~r  341 (531)
T KOG1191|consen  265 LQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRD-AIEAQVTVNG--VPVRLSDTAGIREESNDGIEALGIER  341 (531)
T ss_pred             hhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchh-hheeEeecCC--eEEEEEeccccccccCChhHHHhHHH
Confidence            3567999999999999999999999999999998 4 5555 3344455653  5566699998433       222566


Q ss_pred             cHHhhccCCEEEEEEeC--CChhhHHHHHHHHHHHHHhcC---CCCCCCcEEEEEeCCCCCCc-cccHHHHHHHHHHhC-
Q 006490          491 NKEALASCDVTIFVYDS--SDEYSWKRTKELLVEVARLGE---DSGYGVPCLLIASKDDLKPY-TMAVQDSARVTQELG-  563 (643)
Q Consensus       491 ~~~~~~~ad~illv~D~--s~~~s~~~~~~~~~~i~~~~~---~~~~~~pvilv~NK~Dl~~~-~~~~~~~~~~~~~~~-  563 (643)
                      +...++.||++++|+|+  ++-.+...+.+.+.....-..   ......|++++.||+|+..+ .+.......+.+..+ 
T Consensus       342 A~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~  421 (531)
T KOG1191|consen  342 ARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGR  421 (531)
T ss_pred             HHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccccccC
Confidence            88899999999999999  443333333344443321110   00115789999999999875 222221111222211 


Q ss_pred             --CCCcEEeeeccC-CHHHHHHHHHHHHhCCCCCCCCcccccchhhhhhhhchhhH
Q 006490          564 --IEPPIPVSMKSK-DLNNVFSRIIWAAEHPHLNIPETETGRNRKRYRHLVNSSLV  616 (643)
Q Consensus       564 --~~~~~~vSa~~g-~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  616 (643)
                        ++...++|++++ |++.|...+.+.+........+......+++++++++.+..
T Consensus       422 ~~~~i~~~vs~~tkeg~~~L~~all~~~~~~~~~~~s~~~t~~~~r~~~~~r~~~~  477 (531)
T KOG1191|consen  422 SVFPIVVEVSCTTKEGCERLSTALLNIVERLVVSPHSAPPTLSQKRIKELLRTCAA  477 (531)
T ss_pred             cccceEEEeeechhhhHHHHHHHHHHHHHHhhcCCCCCchhhcchhHHHHHHhhhh
Confidence              223456999999 99999999999876444433333444455677776666653

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.68  E-value=1.4e-15  Score=166.54  Aligned_cols=156  Identities=16%  Similarity=0.202  Sum_probs=111.2

Q ss_pred             cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCC
Q 006490          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (643)
Q Consensus       420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad  499 (643)
                      ..++.+|+++|.+|+|||||+++|.+..+...+.++++.+.....+.++ +...+.+|||+|++.+..+  +...+..+|
T Consensus        84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~-~~~~i~~iDTPGhe~F~~~--r~rga~~aD  160 (587)
T TIGR00487        84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENE-DGKMITFLDTPGHEAFTSM--RARGAKVTD  160 (587)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEEC-CCcEEEEEECCCCcchhhH--HHhhhccCC
Confidence            3456799999999999999999999988766555544444444455554 2337788999999988877  567789999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCC--------CCcEEee
Q 006490          500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGI--------EPPIPVS  571 (643)
Q Consensus       500 ~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~--------~~~~~vS  571 (643)
                      ++++|+|++++..-+. ...+......      ++|+++++||+|+....  .+.........++        .+++++|
T Consensus       161 iaILVVda~dgv~~qT-~e~i~~~~~~------~vPiIVviNKiDl~~~~--~e~v~~~L~~~g~~~~~~~~~~~~v~iS  231 (587)
T TIGR00487       161 IVVLVVAADDGVMPQT-IEAISHAKAA------NVPIIVAINKIDKPEAN--PDRVKQELSEYGLVPEDWGGDTIFVPVS  231 (587)
T ss_pred             EEEEEEECCCCCCHhH-HHHHHHHHHc------CCCEEEEEECcccccCC--HHHHHHHHHHhhhhHHhcCCCceEEEEE
Confidence            9999999987543222 2222333222      79999999999986421  2222233322321        2589999


Q ss_pred             eccC-CHHHHHHHHHHH
Q 006490          572 MKSK-DLNNVFSRIIWA  587 (643)
Q Consensus       572 a~~g-~i~~l~~~l~~~  587 (643)
                      |++| |++++++++...
T Consensus       232 AktGeGI~eLl~~I~~~  248 (587)
T TIGR00487       232 ALTGDGIDELLDMILLQ  248 (587)
T ss_pred             CCCCCChHHHHHhhhhh
Confidence            9999 999999998764

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.68  E-value=3.8e-16  Score=148.49  Aligned_cols=157  Identities=22%  Similarity=0.251  Sum_probs=111.4

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCCCCCC-------------------CCCCCCeeeCCccc--CCceeEEEEeCCCC
Q 006490           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKV-------------------PPVHAPTRLPPDFY--PDRVPVTIIDTSSS   69 (643)
Q Consensus        11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~-------------------~~~~~~~~~~~~~~--~~~~~~~i~Dt~G~   69 (643)
                      +..+|+++|+.++|||||+++|+........                   .+.... .....+.  ..+..++++||||+
T Consensus         2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~-~~~~~~~~~~~~~~i~~iDtPG~   80 (188)
T PF00009_consen    2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITID-LSFISFEKNENNRKITLIDTPGH   80 (188)
T ss_dssp             TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSS-SEEEEEEBTESSEEEEEEEESSS
T ss_pred             CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccc-cccccccccccccceeecccccc
Confidence            4578999999999999999999865421110                   010000 0112222  56788999999999


Q ss_pred             CcchhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHH----H
Q 006490           70 LENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIM----Q  145 (643)
Q Consensus        70 ~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~----~  145 (643)
                      .++.......+..+|++|+|+|+.+.......  ..+..++..  ++|+++|+||+|+...    ...+..+++.    +
T Consensus        81 ~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~--~~l~~~~~~--~~p~ivvlNK~D~~~~----~~~~~~~~~~~~l~~  152 (188)
T PF00009_consen   81 EDFIKEMIRGLRQADIAILVVDANDGIQPQTE--EHLKILREL--GIPIIVVLNKMDLIEK----ELEEIIEEIKEKLLK  152 (188)
T ss_dssp             HHHHHHHHHHHTTSSEEEEEEETTTBSTHHHH--HHHHHHHHT--T-SEEEEEETCTSSHH----HHHHHHHHHHHHHHH
T ss_pred             cceeecccceecccccceeeeecccccccccc--ccccccccc--ccceEEeeeeccchhh----hHHHHHHHHHHHhcc
Confidence            98888888999999999999998876544432  466667776  8999999999999832    2333334333    3


Q ss_pred             hhcc----cceEEEeCcccCCChhHHHHHHHHHHh
Q 006490          146 QFRE----IETCVECSATTMIQVPDVFYYAQKAVL  176 (643)
Q Consensus       146 ~~~~----~~~~~~~Sa~~~~gi~~l~~~i~~~~~  176 (643)
                      .++.    ..+++++||.+|.|+++|++.+.+.++
T Consensus       153 ~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P  187 (188)
T PF00009_consen  153 EYGENGEEIVPVIPISALTGDGIDELLEALVELLP  187 (188)
T ss_dssp             HTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred             ccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence            3321    347999999999999999998887653

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.68  E-value=6.3e-16  Score=169.23  Aligned_cols=156  Identities=19%  Similarity=0.158  Sum_probs=107.6

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCC-CCCCCCeeeCCcccC-CceeEEEEeCCCCCcchhhhHHhhccCCEE
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKV-PPVHAPTRLPPDFYP-DRVPVTIIDTSSSLENKGKLNEELKRADAV   86 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i   86 (643)
                      ..+..+|+|+|++|+|||||+++|.+..+.... ++.+..... ..+.. ++..+.||||||++.+..++...+..+|++
T Consensus        84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~-~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDia  162 (587)
T TIGR00487        84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGA-YHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIV  162 (587)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceE-EEEEECCCcEEEEEECCCCcchhhHHHhhhccCCEE
Confidence            345578999999999999999999988765543 222111111 11222 233799999999999988888899999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHH------HHhhcccceEEEeCccc
Q 006490           87 VLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPI------MQQFREIETCVECSATT  160 (643)
Q Consensus        87 l~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~Sa~~  160 (643)
                      |+|+|+++....+...  .+...+..  ++|+++++||+|+....    .+.....+      ...++...+++++||++
T Consensus       163 ILVVda~dgv~~qT~e--~i~~~~~~--~vPiIVviNKiDl~~~~----~e~v~~~L~~~g~~~~~~~~~~~~v~iSAkt  234 (587)
T TIGR00487       163 VLVVAADDGVMPQTIE--AISHAKAA--NVPIIVAINKIDKPEAN----PDRVKQELSEYGLVPEDWGGDTIFVPVSALT  234 (587)
T ss_pred             EEEEECCCCCCHhHHH--HHHHHHHc--CCCEEEEEECcccccCC----HHHHHHHHHHhhhhHHhcCCCceEEEEECCC
Confidence            9999988754333322  23334444  79999999999986432    11111111      11222223689999999


Q ss_pred             CCChhHHHHHHHH
Q 006490          161 MIQVPDVFYYAQK  173 (643)
Q Consensus       161 ~~gi~~l~~~i~~  173 (643)
                      |.|++++++++..
T Consensus       235 GeGI~eLl~~I~~  247 (587)
T TIGR00487       235 GDGIDELLDMILL  247 (587)
T ss_pred             CCChHHHHHhhhh
Confidence            9999999998764

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.67  E-value=1.6e-15  Score=167.04  Aligned_cols=159  Identities=13%  Similarity=0.198  Sum_probs=115.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCC-------CCCCCc------ccceEEEE--EEc---CCCcEEEEEEecCCchhh
Q 006490          424 FRCLLFGPQNAGKSALLNSFLERPFSE-------NYAPTT------GEQYAVNV--VDQ---PGGNKKTLILQEIPEEGV  485 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~~~~~-------~~~~t~------~~~~~~~~--v~~---~g~~~~~~i~d~~g~~~~  485 (643)
                      -+|+|+|.+++|||||+++|+......       .+..+.      +.++....  +.+   +|....+.+|||+|++.+
T Consensus         4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF   83 (595)
T TIGR01393         4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF   83 (595)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence            479999999999999999999753221       111111      12222222  222   344567889999999988


Q ss_pred             hhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCC
Q 006490          486 KKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE  565 (643)
Q Consensus       486 ~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~  565 (643)
                      ...  +..++..||++++|+|++++.+++....|...+. .      ++|+++|+||+|+.... ..+..+++.+.+++.
T Consensus        84 ~~~--v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~-~------~ipiIiViNKiDl~~~~-~~~~~~el~~~lg~~  153 (595)
T TIGR01393        84 SYE--VSRSLAACEGALLLVDAAQGIEAQTLANVYLALE-N------DLEIIPVINKIDLPSAD-PERVKKEIEEVIGLD  153 (595)
T ss_pred             HHH--HHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH-c------CCCEEEEEECcCCCccC-HHHHHHHHHHHhCCC
Confidence            776  6788999999999999999877776666654432 2      78999999999986432 233445667777764


Q ss_pred             --CcEEeeeccC-CHHHHHHHHHHHHhCCC
Q 006490          566 --PPIPVSMKSK-DLNNVFSRIIWAAEHPH  592 (643)
Q Consensus       566 --~~~~vSa~~g-~i~~l~~~l~~~~~~~~  592 (643)
                        +++++||++| |++++|++|.+.+..|.
T Consensus       154 ~~~vi~vSAktG~GI~~Lle~I~~~lp~p~  183 (595)
T TIGR01393       154 ASEAILASAKTGIGIEEILEAIVKRVPPPK  183 (595)
T ss_pred             cceEEEeeccCCCCHHHHHHHHHHhCCCCC
Confidence              4799999999 99999999999876553

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.67  E-value=8.9e-16  Score=145.95  Aligned_cols=158  Identities=20%  Similarity=0.300  Sum_probs=110.1

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCC-------------C-----CCcccceEEEEEEcCCCcEEEEEEecCCch
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENY-------------A-----PTTGEQYAVNVVDQPGGNKKTLILQEIPEE  483 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~-------------~-----~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~  483 (643)
                      +..+|+++|..++|||||+++|++.......             .     ...+................+.++|++|+.
T Consensus         2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~   81 (188)
T PF00009_consen    2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE   81 (188)
T ss_dssp             TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred             CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence            4578999999999999999999965432111             0     011112223333312356788899999998


Q ss_pred             hhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHH----HHH
Q 006490          484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSA----RVT  559 (643)
Q Consensus       484 ~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~----~~~  559 (643)
                      .+...  ....+..+|++|+|+|+.++.. ....+.+..+...      ++|+++|+||+|+... ...+..+    .+.
T Consensus        82 ~f~~~--~~~~~~~~D~ailvVda~~g~~-~~~~~~l~~~~~~------~~p~ivvlNK~D~~~~-~~~~~~~~~~~~l~  151 (188)
T PF00009_consen   82 DFIKE--MIRGLRQADIAILVVDANDGIQ-PQTEEHLKILREL------GIPIIVVLNKMDLIEK-ELEEIIEEIKEKLL  151 (188)
T ss_dssp             HHHHH--HHHHHTTSSEEEEEEETTTBST-HHHHHHHHHHHHT------T-SEEEEEETCTSSHH-HHHHHHHHHHHHHH
T ss_pred             ceeec--ccceecccccceeeeecccccc-ccccccccccccc------ccceEEeeeeccchhh-hHHHHHHHHHHHhc
Confidence            77654  6778899999999999998765 3345555555555      8999999999999842 2222333    444


Q ss_pred             HHhCCC-----CcEEeeeccC-CHHHHHHHHHHHHh
Q 006490          560 QELGIE-----PPIPVSMKSK-DLNNVFSRIIWAAE  589 (643)
Q Consensus       560 ~~~~~~-----~~~~vSa~~g-~i~~l~~~l~~~~~  589 (643)
                      +.+++.     |++++||++| |+++|++.|.+.+.
T Consensus       152 ~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P  187 (188)
T PF00009_consen  152 KEYGENGEEIVPVIPISALTGDGIDELLEALVELLP  187 (188)
T ss_dssp             HHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred             cccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence            555443     5999999999 99999999988653

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>cd04169 RF3 RF3 subfamily

Probab=99.67  E-value=2.3e-16  Score=157.12  Aligned_cols=226  Identities=13%  Similarity=0.041  Sum_probs=129.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCC----------CC------------eeeCCcccCCceeEEEEeCCCCCc
Q 006490           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVH----------AP------------TRLPPDFYPDRVPVTIIDTSSSLE   71 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~----------~~------------~~~~~~~~~~~~~~~i~Dt~G~~~   71 (643)
                      +|+|+|++|+|||||+++|+...-.....+..          ..            ......+..+++++++|||||+.+
T Consensus         4 ni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~d   83 (267)
T cd04169           4 TFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHED   83 (267)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCchH
Confidence            59999999999999999998643111111100          00            001124556789999999999988


Q ss_pred             chhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccc
Q 006490           72 NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIE  151 (643)
Q Consensus        72 ~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~  151 (643)
                      +......+++.+|++|+|+|+++.....  ...++......  ++|+++++||+|+....    ....+..+...++.-.
T Consensus        84 f~~~~~~~l~~aD~~IlVvda~~g~~~~--~~~i~~~~~~~--~~P~iivvNK~D~~~a~----~~~~~~~l~~~l~~~~  155 (267)
T cd04169          84 FSEDTYRTLTAVDSAVMVIDAAKGVEPQ--TRKLFEVCRLR--GIPIITFINKLDREGRD----PLELLDEIEEELGIDC  155 (267)
T ss_pred             HHHHHHHHHHHCCEEEEEEECCCCccHH--HHHHHHHHHhc--CCCEEEEEECCccCCCC----HHHHHHHHHHHHCCCc
Confidence            8777778899999999999988764322  22455565555  79999999999986542    2233455666665321


Q ss_pred             eEEEeCcccCCChhHHHHHHHHHHhCC-C--CC-------CCccccccchHHHHHHHHhhhhhcCCCCCCCCChHHHHH-
Q 006490          152 TCVECSATTMIQVPDVFYYAQKAVLHP-T--AP-------LFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNE-  220 (643)
Q Consensus       152 ~~~~~Sa~~~~gi~~l~~~i~~~~~~~-~--~~-------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~el~~-  220 (643)
                      -.+.+....+.++..+.+.+...+... .  ..       ..........+.....+++.+...+...+. + .+-+.. 
T Consensus       156 ~~~~~Pi~~~~~~~g~vd~~~~~a~~~~~~~~~~~~~~~~~p~~~~e~~~e~~~~l~e~~~e~~~~~~~~-~-~~~~~~~  233 (267)
T cd04169         156 TPLTWPIGMGKDFKGVYDRRTGEVELYDRGAGGATIAPEETKGLDDPKLDELGGDLAEQLREELELLEGA-G-PEFDQEA  233 (267)
T ss_pred             eeEEecccCCCceEEEEEhhhCEEEEecCCCCCccceeccCCcccHHHHHhcCHHHHHHHhCCCccchhh-h-HHHhHHH
Confidence            122222233433333333332222111 1  00       000111111122233444444332211111 0 001111 


Q ss_pred             Hhhh-----hcCCCCCHHHHHHHHHHHHhhccCC
Q 006490          221 FQVK-----CFNAPLQPAEIVGVKRVVQEKQHDG  249 (643)
Q Consensus       221 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~  249 (643)
                      ....     ++++++...++..|++.+..++|+|
T Consensus       234 ~~~~~~~Pv~~gsa~~~~Gv~~Lld~i~~~~P~p  267 (267)
T cd04169         234 FLAGELTPVFFGSALNNFGVQELLDALVDLAPAP  267 (267)
T ss_pred             HHcCCEEEEEecccccCcCHHHHHHHHHHHCCCC
Confidence            1111     6889999999999999999999875

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.66  E-value=7.7e-16  Score=164.21  Aligned_cols=157  Identities=15%  Similarity=0.135  Sum_probs=120.9

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCC-CCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcc------hhhhHHhh--c
Q 006490           11 TGVRVVVVGDRGTGKSSLIAAAATES-VPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLEN------KGKLNEEL--K   81 (643)
Q Consensus        11 ~~~kI~lvG~~~vGKSsL~n~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~------~~~~~~~~--~   81 (643)
                      +..+|+++|+||||||||+|+|++.+ .+.++||++ ..++.+.+...+..++++|.||....      +.....++  .
T Consensus         2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvT-VEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~   80 (653)
T COG0370           2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVT-VEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEG   80 (653)
T ss_pred             CcceEEEecCCCccHHHHHHHHhccCceecCCCCee-EEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcC
Confidence            45679999999999999999999987 788899943 34466777788888999999997642      22233333  4


Q ss_pred             cCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccC
Q 006490           82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM  161 (643)
Q Consensus        82 ~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  161 (643)
                      .+|+++.|+|+++.+..-.    +.-++.+.  ++|++++.|++|..+...+ ..+  .+.+.+.+|  .+++++||+.|
T Consensus        81 ~~D~ivnVvDAtnLeRnLy----ltlQLlE~--g~p~ilaLNm~D~A~~~Gi-~ID--~~~L~~~LG--vPVv~tvA~~g  149 (653)
T COG0370          81 KPDLIVNVVDATNLERNLY----LTLQLLEL--GIPMILALNMIDEAKKRGI-RID--IEKLSKLLG--VPVVPTVAKRG  149 (653)
T ss_pred             CCCEEEEEcccchHHHHHH----HHHHHHHc--CCCeEEEeccHhhHHhcCC-ccc--HHHHHHHhC--CCEEEEEeecC
Confidence            5799999999988765443    33344555  8999999999998876655 333  356777787  48999999999


Q ss_pred             CChhHHHHHHHHHHhCCC
Q 006490          162 IQVPDVFYYAQKAVLHPT  179 (643)
Q Consensus       162 ~gi~~l~~~i~~~~~~~~  179 (643)
                      .|++++.+.+.+......
T Consensus       150 ~G~~~l~~~i~~~~~~~~  167 (653)
T COG0370         150 EGLEELKRAIIELAESKT  167 (653)
T ss_pred             CCHHHHHHHHHHhccccc
Confidence            999999999988765444

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.66  E-value=7.6e-16  Score=170.63  Aligned_cols=158  Identities=14%  Similarity=0.174  Sum_probs=111.2

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCC-CCCCC---CeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCC
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKV-PPVHA---PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRAD   84 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad   84 (643)
                      ..+..+|+|+|++|+|||||+++|.+..+.... ++.+.   .+.........+..+.||||||++.|..++..++..+|
T Consensus       241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aD  320 (742)
T CHL00189        241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTD  320 (742)
T ss_pred             cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCC
Confidence            345678999999999999999999987765432 22111   11111122234688999999999999888889999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHH------HHhhcccceEEEeCc
Q 006490           85 AVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPI------MQQFREIETCVECSA  158 (643)
Q Consensus        85 ~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~Sa  158 (643)
                      ++|+|+|+++....+...  .+..+...  ++|+|+|+||+|+....    .+.....+      ...++...+++++||
T Consensus       321 iaILVVDA~dGv~~QT~E--~I~~~k~~--~iPiIVViNKiDl~~~~----~e~v~~eL~~~~ll~e~~g~~vpvv~VSA  392 (742)
T CHL00189        321 IAILIIAADDGVKPQTIE--AINYIQAA--NVPIIVAINKIDKANAN----TERIKQQLAKYNLIPEKWGGDTPMIPISA  392 (742)
T ss_pred             EEEEEEECcCCCChhhHH--HHHHHHhc--CceEEEEEECCCccccC----HHHHHHHHHHhccchHhhCCCceEEEEEC
Confidence            999999998764433332  23344444  79999999999987532    11211222      223343357999999


Q ss_pred             ccCCChhHHHHHHHHH
Q 006490          159 TTMIQVPDVFYYAQKA  174 (643)
Q Consensus       159 ~~~~gi~~l~~~i~~~  174 (643)
                      ++|.|+++|++.+...
T Consensus       393 ktG~GIdeLle~I~~l  408 (742)
T CHL00189        393 SQGTNIDKLLETILLL  408 (742)
T ss_pred             CCCCCHHHHHHhhhhh
Confidence            9999999999987664

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.66  E-value=1.4e-15  Score=167.43  Aligned_cols=158  Identities=19%  Similarity=0.179  Sum_probs=112.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC-------CCCCCCCC------CCCee----eCCcc---cCCceeEEEEeCCCCCcch
Q 006490           14 RVVVVGDRGTGKSSLIAAAATES-------VPEKVPPV------HAPTR----LPPDF---YPDRVPVTIIDTSSSLENK   73 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~~~-------~~~~~~~~------~~~~~----~~~~~---~~~~~~~~i~Dt~G~~~~~   73 (643)
                      +|+|+|++++|||||+++|+...       +...+..+      .+.+.    ....+   +...+.++||||||+.++.
T Consensus         5 Ni~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF~   84 (595)
T TIGR01393         5 NFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFS   84 (595)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHHH
Confidence            59999999999999999998753       11111110      01111    11111   2345889999999999998


Q ss_pred             hhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhccc-ce
Q 006490           74 GKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREI-ET  152 (643)
Q Consensus        74 ~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~  152 (643)
                      ..+..+++.+|++|+|+|+++..+.+... .|...+. .  ++|+++|+||+|+....    .++...++.+.++.- ..
T Consensus        85 ~~v~~~l~~aD~aILVvDat~g~~~qt~~-~~~~~~~-~--~ipiIiViNKiDl~~~~----~~~~~~el~~~lg~~~~~  156 (595)
T TIGR01393        85 YEVSRSLAACEGALLLVDAAQGIEAQTLA-NVYLALE-N--DLEIIPVINKIDLPSAD----PERVKKEIEEVIGLDASE  156 (595)
T ss_pred             HHHHHHHHhCCEEEEEecCCCCCCHhHHH-HHHHHHH-c--CCCEEEEEECcCCCccC----HHHHHHHHHHHhCCCcce
Confidence            88999999999999999999887776655 3544333 3  78999999999986432    223334454544421 14


Q ss_pred             EEEeCcccCCChhHHHHHHHHHHhCCC
Q 006490          153 CVECSATTMIQVPDVFYYAQKAVLHPT  179 (643)
Q Consensus       153 ~~~~Sa~~~~gi~~l~~~i~~~~~~~~  179 (643)
                      ++++||++|.|++++++.+.+.+..+.
T Consensus       157 vi~vSAktG~GI~~Lle~I~~~lp~p~  183 (595)
T TIGR01393       157 AILASAKTGIGIEEILEAIVKRVPPPK  183 (595)
T ss_pred             EEEeeccCCCCHHHHHHHHHHhCCCCC
Confidence            799999999999999999998876553

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.66  E-value=1.1e-15  Score=170.97  Aligned_cols=159  Identities=19%  Similarity=0.168  Sum_probs=110.0

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCC-CCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEE
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKV-PPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il   87 (643)
                      ..+...|+|+|+.|+|||||+++|.+..+.... .+.+.. .....+...+..++||||||++.|..++...+..+|++|
T Consensus       287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~-iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDiaI  365 (787)
T PRK05306        287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQH-IGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIVV  365 (787)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeee-ccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCCEEE
Confidence            456678999999999999999999987765432 221111 111123344678999999999999988888999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhh---hHHHHhhcccceEEEeCcccCCCh
Q 006490           88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVM---GPIMQQFREIETCVECSATTMIQV  164 (643)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~Sa~~~~gi  164 (643)
                      +|||+++....+...  .+..++..  ++|+|+|+||+|+...... .....+   ..+...++...+++++||++|.||
T Consensus       366 LVVdAddGv~~qT~e--~i~~a~~~--~vPiIVviNKiDl~~a~~e-~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI  440 (787)
T PRK05306        366 LVVAADDGVMPQTIE--AINHAKAA--GVPIIVAINKIDKPGANPD-RVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGI  440 (787)
T ss_pred             EEEECCCCCCHhHHH--HHHHHHhc--CCcEEEEEECccccccCHH-HHHHHHHHhcccHHHhCCCceEEEEeCCCCCCc
Confidence            999998754333322  22334444  7999999999999653211 111111   112233333347999999999999


Q ss_pred             hHHHHHHHH
Q 006490          165 PDVFYYAQK  173 (643)
Q Consensus       165 ~~l~~~i~~  173 (643)
                      +++++.+..
T Consensus       441 ~eLle~I~~  449 (787)
T PRK05306        441 DELLEAILL  449 (787)
T ss_pred             hHHHHhhhh
Confidence            999998764

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.66  E-value=1.2e-15  Score=146.66  Aligned_cols=164  Identities=18%  Similarity=0.155  Sum_probs=100.0

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCC---CCC-CCCCCCCee-eCCcc-------------------------cC------
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATESV---PEK-VPPVHAPTR-LPPDF-------------------------YP------   56 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~~~---~~~-~~~~~~~~~-~~~~~-------------------------~~------   56 (643)
                      ++|+|+|+.|+|||||+.++.+...   ... ..+..-... .....                         ..      
T Consensus         1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T cd01888           1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK   80 (203)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence            4799999999999999999976521   111 000000000 00000                         00      


Q ss_pred             CceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchh
Q 006490           57 DRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSL  136 (643)
Q Consensus        57 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~  136 (643)
                      ....+.||||||++.+...+...+..+|++++|+|++++........ .+..+.... ..|+++|+||+|+.........
T Consensus        81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~-~l~~~~~~~-~~~iiivvNK~Dl~~~~~~~~~  158 (203)
T cd01888          81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSE-HLAALEIMG-LKHIIIVQNKIDLVKEEQALEN  158 (203)
T ss_pred             cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHH-HHHHHHHcC-CCcEEEEEEchhccCHHHHHHH
Confidence            12679999999988877777778888999999999987421111111 222333331 3579999999998753211011


Q ss_pred             hhhhhHHHHhhc-ccceEEEeCcccCCChhHHHHHHHHHHhCC
Q 006490          137 EEVMGPIMQQFR-EIETCVECSATTMIQVPDVFYYAQKAVLHP  178 (643)
Q Consensus       137 ~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi~~l~~~i~~~~~~~  178 (643)
                      .+.+..+...+. ...+++++||++|.|++++++.+.+.+..+
T Consensus       159 ~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~~  201 (203)
T cd01888         159 YEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPTP  201 (203)
T ss_pred             HHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCCC
Confidence            122222222211 123689999999999999999998876543

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.65  E-value=1.4e-15  Score=133.29  Aligned_cols=139  Identities=18%  Similarity=0.274  Sum_probs=101.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEEE
Q 006490          425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV  504 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv  504 (643)
                      ||.++|+.+||||||+++|.+.+.  .+..|....+.-..+|+||...     +.   ..+..-  ......+||+|++|
T Consensus         3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~~~~~~IDTPGEyi-----E~---~~~y~a--Li~ta~dad~V~ll   70 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIEYYDNTIDTPGEYI-----EN---PRFYHA--LIVTAQDADVVLLL   70 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeEecccEEECChhhe-----eC---HHHHHH--HHHHHhhCCEEEEE
Confidence            799999999999999999999764  4445666656556666664221     11   122221  24455799999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC-CHHHHHHH
Q 006490          505 YDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNVFSR  583 (643)
Q Consensus       505 ~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l~~~  583 (643)
                      .|++++.+.- -..+...+         ++|+|-|+||+|+..+....+.++++.+..|+..+|++|+.+| |+++|.++
T Consensus        71 ~dat~~~~~~-pP~fa~~f---------~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~  140 (143)
T PF10662_consen   71 QDATEPRSVF-PPGFASMF---------NKPVIGVITKIDLPSDDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDY  140 (143)
T ss_pred             ecCCCCCccC-Cchhhccc---------CCCEEEEEECccCccchhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHH
Confidence            9999874411 11111111         7899999999999955555678888999999998999999999 99999998


Q ss_pred             HH
Q 006490          584 II  585 (643)
Q Consensus       584 l~  585 (643)
                      |.
T Consensus       141 L~  142 (143)
T PF10662_consen  141 LE  142 (143)
T ss_pred             Hh
Confidence            74

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.64  E-value=3.1e-15  Score=143.60  Aligned_cols=117  Identities=19%  Similarity=0.285  Sum_probs=88.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-eCCcccCCceeEEEEeCCCCCcchhhhHHhhccC-CEEEEEEE
Q 006490           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRA-DAVVLTYA   91 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a-d~il~v~d   91 (643)
                      +|+|+|++|||||||+++|....+....+++..... ........+..+.+|||||+..+...+..+++.+ +++|+|+|
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD   81 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD   81 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence            589999999999999999999887665544322221 1111113467899999999998888888889998 99999999


Q ss_pred             CCCc-ccHHHHHHHHHHHHHh---cCCCCcEEEEEecccCCCC
Q 006490           92 CNQQ-STLSRLSSYWLPELRR---LEIKVPIIVAGCKLDLRGD  130 (643)
Q Consensus        92 ~~~~-~s~~~~~~~~~~~l~~---~~~~~pvilv~NK~D~~~~  130 (643)
                      +++. .++.....+|...+..   ..+++|+++|+||+|+...
T Consensus        82 ~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a  124 (203)
T cd04105          82 SATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA  124 (203)
T ss_pred             CccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence            9987 6777776555444432   2358999999999998764

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.64  E-value=5.5e-16  Score=137.75  Aligned_cols=162  Identities=17%  Similarity=0.293  Sum_probs=130.9

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCccc--CCceeEEEEeCCCCCcchhhhHHhhccCCEEE
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFY--PDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il   87 (643)
                      ...+|++++|+.|.||||+.++.+.+.|...++.+.+....+..+.  .+.+++..|||.|++.+.....-++-++.+.+
T Consensus         8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi   87 (216)
T KOG0096|consen    8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI   87 (216)
T ss_pred             cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence            4679999999999999999999999999888887777666443333  23489999999999999988888999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHH
Q 006490           88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV  167 (643)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  167 (643)
                      ++||++.+.++.++. +|...+.+.|.++||+++|||.|.......   ...+...   .+....++++||+.+.|...-
T Consensus        88 imFdVtsr~t~~n~~-rwhrd~~rv~~NiPiv~cGNKvDi~~r~~k---~k~v~~~---rkknl~y~~iSaksn~NfekP  160 (216)
T KOG0096|consen   88 IMFDVTSRFTYKNVP-RWHRDLVRVRENIPIVLCGNKVDIKARKVK---AKPVSFH---RKKNLQYYEISAKSNYNFERP  160 (216)
T ss_pred             EEeeeeehhhhhcch-HHHHHHHHHhcCCCeeeeccceeccccccc---cccceee---ecccceeEEeecccccccccc
Confidence            999999999999998 599999888889999999999997653211   0001100   111236999999999999999


Q ss_pred             HHHHHHHHhCC
Q 006490          168 FYYAQKAVLHP  178 (643)
Q Consensus       168 ~~~i~~~~~~~  178 (643)
                      |.++.+.+.-.
T Consensus       161 Fl~LarKl~G~  171 (216)
T KOG0096|consen  161 FLWLARKLTGD  171 (216)
T ss_pred             hHHHhhhhcCC
Confidence            99999987543

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.64  E-value=5.2e-15  Score=163.01  Aligned_cols=156  Identities=14%  Similarity=0.115  Sum_probs=112.0

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCC---CCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490          424 FRCLLFGPQNAGKSALLNSFLERP---FSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~~---~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (643)
                      +.|+++|.+|+|||||+++|++..   +...+.++++.+.....+.+++  ..+.+||++|++.+...  +...+..+|+
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~--~~~g~~~aD~   76 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISN--AIAGGGGIDA   76 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHH--HHhhhccCCE
Confidence            368999999999999999999744   2222334444445455566663  67789999999887665  6778899999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCc-EEEEEeCCCCCCcccc---HHHHHHHHHHhCC---CCcEEeeec
Q 006490          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVP-CLLIASKDDLKPYTMA---VQDSARVTQELGI---EPPIPVSMK  573 (643)
Q Consensus       501 illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~p-vilv~NK~Dl~~~~~~---~~~~~~~~~~~~~---~~~~~vSa~  573 (643)
                      +++|+|++++.. .+..+.+..+...      ++| +++|+||+|+.+....   .+.+.++.+.+++   .+++++||+
T Consensus        77 aILVVDa~~G~~-~qT~ehl~il~~l------gi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~  149 (581)
T TIGR00475        77 ALLVVDADEGVM-TQTGEHLAVLDLL------GIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAK  149 (581)
T ss_pred             EEEEEECCCCCc-HHHHHHHHHHHHc------CCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCC
Confidence            999999998532 1122222223322      778 9999999999864422   3455566666543   369999999


Q ss_pred             cC-CHHHHHHHHHHHHhC
Q 006490          574 SK-DLNNVFSRIIWAAEH  590 (643)
Q Consensus       574 ~g-~i~~l~~~l~~~~~~  590 (643)
                      +| |++++++.+.+.+..
T Consensus       150 tG~GI~eL~~~L~~l~~~  167 (581)
T TIGR00475       150 TGQGIGELKKELKNLLES  167 (581)
T ss_pred             CCCCchhHHHHHHHHHHh
Confidence            99 999999999887654

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.64  E-value=3.1e-15  Score=143.06  Aligned_cols=172  Identities=19%  Similarity=0.187  Sum_probs=118.3

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-eCCcccCCceeEEEEeCCCCCcchh------------h
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKG------------K   75 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~------------~   75 (643)
                      ..+.+.|+++|.||||||||.|.+++.+.......+.+++. +.+.+..+...+.|+||||.-.-..            .
T Consensus        69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~  148 (379)
T KOG1423|consen   69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQN  148 (379)
T ss_pred             cceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhC
Confidence            34568999999999999999999999996655444333333 5666777888999999999753111            1


Q ss_pred             hHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccc----------hhhhhhhHHHH
Q 006490           76 LNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNAT----------SLEEVMGPIMQ  145 (643)
Q Consensus        76 ~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~----------~~~~~~~~~~~  145 (643)
                      ...++..||++++|+|+++....-..  ..+..++++. ++|-|||.||+|........          .......++.+
T Consensus       149 ~~~a~q~AD~vvVv~Das~tr~~l~p--~vl~~l~~ys-~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~  225 (379)
T KOG1423|consen  149 PRDAAQNADCVVVVVDASATRTPLHP--RVLHMLEEYS-KIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQE  225 (379)
T ss_pred             HHHHHhhCCEEEEEEeccCCcCccCh--HHHHHHHHHh-cCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHH
Confidence            22678889999999999874333332  3566666653 89999999999977542110          00111122233


Q ss_pred             hhc---------------ccceEEEeCcccCCChhHHHHHHHHHHhCCCCCCCc
Q 006490          146 QFR---------------EIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFD  184 (643)
Q Consensus       146 ~~~---------------~~~~~~~~Sa~~~~gi~~l~~~i~~~~~~~~~~~~~  184 (643)
                      ++.               .+..+|.+||++|+||+++-++++..+... ++.|.
T Consensus       226 ~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~g-pW~y~  278 (379)
T KOG1423|consen  226 KFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPG-PWKYP  278 (379)
T ss_pred             HhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCC-CCCCC
Confidence            322               234589999999999999999999886543 33343

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.64  E-value=1.5e-15  Score=167.20  Aligned_cols=159  Identities=17%  Similarity=0.102  Sum_probs=108.2

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCC---CCCC-CCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEE
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATES---VPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (643)
                      +.|+++|++|+|||||+++|++..   +.+. .++.+ .......+...+..+.+|||||++.+...+...+..+|++++
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiT-id~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aIL   79 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMT-IDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALL   79 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCce-EEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEE
Confidence            469999999999999999999743   2222 11211 111111233445889999999998888777788999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHhcCCCCc-EEEEEecccCCCCCccchhhhhhhHHHHhhcc--cceEEEeCcccCCChh
Q 006490           89 TYACNQQSTLSRLSSYWLPELRRLEIKVP-IIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE--IETCVECSATTMIQVP  165 (643)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~~~~~~p-vilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~  165 (643)
                      |+|+++....+..  ..+..+...  ++| +++|+||+|+.+........+.+..+.+.++.  ..+++++||++|.|++
T Consensus        80 VVDa~~G~~~qT~--ehl~il~~l--gi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~  155 (581)
T TIGR00475        80 VVDADEGVMTQTG--EHLAVLDLL--GIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIG  155 (581)
T ss_pred             EEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCch
Confidence            9999874322221  123344444  677 99999999997543221123334444444431  2479999999999999


Q ss_pred             HHHHHHHHHHh
Q 006490          166 DVFYYAQKAVL  176 (643)
Q Consensus       166 ~l~~~i~~~~~  176 (643)
                      ++++.+...+.
T Consensus       156 eL~~~L~~l~~  166 (581)
T TIGR00475       156 ELKKELKNLLE  166 (581)
T ss_pred             hHHHHHHHHHH
Confidence            99998876543

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.64  E-value=2.5e-15  Score=134.59  Aligned_cols=160  Identities=21%  Similarity=0.197  Sum_probs=123.5

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (643)
                      ....+|+++|--|+||||++++|-..+...+ .||.+..  +..+...  ...+.+||..|++.+..+  +..|+...++
T Consensus        15 ~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfn--VE~v~yk--n~~f~vWDvGGq~k~R~l--W~~Y~~~t~~   87 (181)
T KOG0070|consen   15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFN--VETVEYK--NISFTVWDVGGQEKLRPL--WKHYFQNTQG   87 (181)
T ss_pred             cceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccc--eeEEEEc--ceEEEEEecCCCcccccc--hhhhccCCcE
Confidence            4568999999999999999999998887665 5777654  4444443  567888999999999888  9999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCC----CcEEeeeccC-
Q 006490          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE----PPIPVSMKSK-  575 (643)
Q Consensus       501 illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~----~~~~vSa~~g-  575 (643)
                      +|+|+|.+|++.+.+.++.+..+.......  +.|+++.+||.|+...-. ..++........+.    .+..|+|.+| 
T Consensus        88 lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~--~~~llv~aNKqD~~~als-~~ei~~~L~l~~l~~~~w~iq~~~a~~G~  164 (181)
T KOG0070|consen   88 LIFVVDSSDRERIEEAKEELHRMLAEPELR--NAPLLVFANKQDLPGALS-AAEITNKLGLHSLRSRNWHIQSTCAISGE  164 (181)
T ss_pred             EEEEEeCCcHHHHHHHHHHHHHHHcCcccC--CceEEEEechhhccccCC-HHHHHhHhhhhccCCCCcEEeeccccccc
Confidence            999999999988888887777776655433  899999999999876322 12222222222221    2678999999 


Q ss_pred             CHHHHHHHHHHHHhC
Q 006490          576 DLNNVFSRIIWAAEH  590 (643)
Q Consensus       576 ~i~~l~~~l~~~~~~  590 (643)
                      |+.+.++++.+.+..
T Consensus       165 GL~egl~wl~~~~~~  179 (181)
T KOG0070|consen  165 GLYEGLDWLSNNLKK  179 (181)
T ss_pred             cHHHHHHHHHHHHhc
Confidence            999999999988753

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.64  E-value=4.7e-15  Score=167.07  Aligned_cols=155  Identities=17%  Similarity=0.177  Sum_probs=111.9

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhc--------cHHh
Q 006490          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILS--------NKEA  494 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~--------~~~~  494 (643)
                      .++|+++|.||||||||+|+|++........|.++.+.....+..  +..++.++|++|...+.....        ...+
T Consensus         3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~--~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~   80 (772)
T PRK09554          3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFST--TDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (772)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEc--CceEEEEEECCCccccccccccccHHHHHHHHH
Confidence            468999999999999999999987653222243333233333433  445677899999765532100        1223


Q ss_pred             h--ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeee
Q 006490          495 L--ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSM  572 (643)
Q Consensus       495 ~--~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa  572 (643)
                      +  ..+|++++|+|+++.+.   ...+..++.+.      ++|+++|+||+|+.+++......+.+.+.+|++ ++++||
T Consensus        81 l~~~~aD~vI~VvDat~ler---~l~l~~ql~e~------giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~p-VvpiSA  150 (772)
T PRK09554         81 ILSGDADLLINVVDASNLER---NLYLTLQLLEL------GIPCIVALNMLDIAEKQNIRIDIDALSARLGCP-VIPLVS  150 (772)
T ss_pred             HhccCCCEEEEEecCCcchh---hHHHHHHHHHc------CCCEEEEEEchhhhhccCcHHHHHHHHHHhCCC-EEEEEe
Confidence            2  48999999999998543   23344555554      899999999999876555566778889999986 999999


Q ss_pred             ccC-CHHHHHHHHHHHHh
Q 006490          573 KSK-DLNNVFSRIIWAAE  589 (643)
Q Consensus       573 ~~g-~i~~l~~~l~~~~~  589 (643)
                      ++| |++++.+.+.+...
T Consensus       151 ~~g~GIdeL~~~I~~~~~  168 (772)
T PRK09554        151 TRGRGIEALKLAIDRHQA  168 (772)
T ss_pred             ecCCCHHHHHHHHHHhhh
Confidence            999 99999999987653

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.63  E-value=1.8e-14  Score=132.03  Aligned_cols=157  Identities=18%  Similarity=0.237  Sum_probs=110.5

Q ss_pred             cCceEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCCcccceEEEEEEcCCCcEEEEEEecCCc----------hhhhhh
Q 006490          420 ERNVFRCLLFGPQNAGKSALLNSFLERPF-SENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE----------EGVKKI  488 (643)
Q Consensus       420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~-~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~----------~~~~~~  488 (643)
                      ......|+++|++|||||||+|+|++++. +.++ .|.+.+..++.+.+.+.   +.++|.+|-          +....+
T Consensus        21 ~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtS-ktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~   96 (200)
T COG0218          21 EDDLPEIAFAGRSNVGKSSLINALTNQKNLARTS-KTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKL   96 (200)
T ss_pred             CCCCcEEEEEccCcccHHHHHHHHhCCcceeecC-CCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHH
Confidence            34567899999999999999999999764 4444 34444445666666532   456788872          222222


Q ss_pred             hccHHhhc---cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCC
Q 006490          489 LSNKEALA---SCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE  565 (643)
Q Consensus       489 ~~~~~~~~---~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~  565 (643)
                        ...|++   .-.++++++|+..+.. +...+.+..+...      ++|+++|+||+|..............++.++..
T Consensus        97 --i~~YL~~R~~L~~vvlliD~r~~~~-~~D~em~~~l~~~------~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~  167 (200)
T COG0218          97 --IEEYLEKRANLKGVVLLIDARHPPK-DLDREMIEFLLEL------GIPVIVVLTKADKLKKSERNKQLNKVAEELKKP  167 (200)
T ss_pred             --HHHHHhhchhheEEEEEEECCCCCc-HHHHHHHHHHHHc------CCCeEEEEEccccCChhHHHHHHHHHHHHhcCC
Confidence              233442   3568899999998755 3334555555555      899999999999998766666667777766654


Q ss_pred             ---C--cEEeeeccC-CHHHHHHHHHHHHh
Q 006490          566 ---P--PIPVSMKSK-DLNNVFSRIIWAAE  589 (643)
Q Consensus       566 ---~--~~~vSa~~g-~i~~l~~~l~~~~~  589 (643)
                         .  ++.+|+.++ |++++...|.+.+.
T Consensus       168 ~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~  197 (200)
T COG0218         168 PPDDQWVVLFSSLKKKGIDELKAKILEWLK  197 (200)
T ss_pred             CCccceEEEEecccccCHHHHHHHHHHHhh
Confidence               1  678999999 99999999888764

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.63  E-value=2.2e-15  Score=166.06  Aligned_cols=147  Identities=19%  Similarity=0.199  Sum_probs=106.8

Q ss_pred             cCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhc----cHHh--hccCCEEEE
Q 006490          430 GPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILS----NKEA--LASCDVTIF  503 (643)
Q Consensus       430 G~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~----~~~~--~~~ad~ill  503 (643)
                      |+||||||||+|+|++........|+++.+.....+..+|  ..+.+||++|++.+.....    ...+  ...+|++++
T Consensus         1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~   78 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN   78 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence            8999999999999999876443345555444445555543  3567899999876544210    1222  247999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC-CHHHHHH
Q 006490          504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNVFS  582 (643)
Q Consensus       504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l~~  582 (643)
                      |+|+++.+   ....+..++.+.      ++|+++|+||+|+.+++......+.+++.++.+ ++++||++| |++++++
T Consensus        79 VvDat~le---r~l~l~~ql~~~------~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg~p-vv~tSA~tg~Gi~eL~~  148 (591)
T TIGR00437        79 VVDASNLE---RNLYLTLQLLEL------GIPMILALNLVDEAEKKGIRIDEEKLEERLGVP-VVPTSATEGRGIERLKD  148 (591)
T ss_pred             EecCCcch---hhHHHHHHHHhc------CCCEEEEEehhHHHHhCCChhhHHHHHHHcCCC-EEEEECCCCCCHHHHHH
Confidence            99998743   223333344333      899999999999976554455678888999986 999999999 9999999


Q ss_pred             HHHHHH
Q 006490          583 RIIWAA  588 (643)
Q Consensus       583 ~l~~~~  588 (643)
                      .+.+.+
T Consensus       149 ~i~~~~  154 (591)
T TIGR00437       149 AIRKAI  154 (591)
T ss_pred             HHHHHh
Confidence            998764

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.63  E-value=7.4e-15  Score=141.21  Aligned_cols=161  Identities=17%  Similarity=0.141  Sum_probs=99.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-----CCcccceEEEEEE-----------------------cC--C----
Q 006490          424 FRCLLFGPQNAGKSALLNSFLERPFSENYA-----PTTGEQYAVNVVD-----------------------QP--G----  469 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~-----~t~~~~~~~~~v~-----------------------~~--g----  469 (643)
                      ++|+++|..++|||||+.++.+........     .+....+....+.                       ..  +    
T Consensus         1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T cd01888           1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK   80 (203)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence            368999999999999999997652111000     0111111110000                       00  1    


Q ss_pred             CcEEEEEEecCCchhhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcc
Q 006490          470 GNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT  549 (643)
Q Consensus       470 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~  549 (643)
                      ....+.+||++|++.+...  ....+..+|++++|+|++++.........+..+... .    ..|+++|+||+|+....
T Consensus        81 ~~~~i~~iDtPG~~~~~~~--~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~-~----~~~iiivvNK~Dl~~~~  153 (203)
T cd01888          81 LVRHVSFVDCPGHEILMAT--MLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM-G----LKHIIIVQNKIDLVKEE  153 (203)
T ss_pred             cccEEEEEECCChHHHHHH--HHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc-C----CCcEEEEEEchhccCHH
Confidence            0156778999999877554  677788999999999999742111112222222222 1    34799999999997643


Q ss_pred             ccH---HHHHHHHHHh--CCCCcEEeeeccC-CHHHHHHHHHHHHhCC
Q 006490          550 MAV---QDSARVTQEL--GIEPPIPVSMKSK-DLNNVFSRIIWAAEHP  591 (643)
Q Consensus       550 ~~~---~~~~~~~~~~--~~~~~~~vSa~~g-~i~~l~~~l~~~~~~~  591 (643)
                      ...   +..+++.+.+  ...+++++||++| |++++++.+.+.+..|
T Consensus       154 ~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~~  201 (203)
T cd01888         154 QALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPTP  201 (203)
T ss_pred             HHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCCC
Confidence            222   2333333332  1225899999999 9999999998876543

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.63  E-value=6.4e-16  Score=137.35  Aligned_cols=160  Identities=17%  Similarity=0.303  Sum_probs=136.8

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i  501 (643)
                      -.++++++|+.|.||||++++.+.++|...+.+|++.........+.-+..++-.|||+|++.+..+  ...++-++.+.
T Consensus         9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~ggl--rdgyyI~~qcA   86 (216)
T KOG0096|consen    9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGL--RDGYYIQGQCA   86 (216)
T ss_pred             ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeeccc--ccccEEeccee
Confidence            3689999999999999999999999999999999998777777777756788889999999988776  66777888999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC-CHHHH
Q 006490          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNV  580 (643)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l  580 (643)
                      +++||++...+...+.+|..++.+.+.    ++|+|+++||.|..... .....-.+.+..++. ++++||+++ |.+.-
T Consensus        87 iimFdVtsr~t~~n~~rwhrd~~rv~~----NiPiv~cGNKvDi~~r~-~k~k~v~~~rkknl~-y~~iSaksn~NfekP  160 (216)
T KOG0096|consen   87 IIMFDVTSRFTYKNVPRWHRDLVRVRE----NIPIVLCGNKVDIKARK-VKAKPVSFHRKKNLQ-YYEISAKSNYNFERP  160 (216)
T ss_pred             EEEeeeeehhhhhcchHHHHHHHHHhc----CCCeeeeccceeccccc-cccccceeeecccce-eEEeecccccccccc
Confidence            999999999999999999999988876    89999999999976643 223333445556666 899999999 99999


Q ss_pred             HHHHHHHHh
Q 006490          581 FSRIIWAAE  589 (643)
Q Consensus       581 ~~~l~~~~~  589 (643)
                      |.++++.+.
T Consensus       161 Fl~LarKl~  169 (216)
T KOG0096|consen  161 FLWLARKLT  169 (216)
T ss_pred             hHHHhhhhc
Confidence            999999764

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.63  E-value=5.2e-15  Score=144.89  Aligned_cols=150  Identities=17%  Similarity=0.186  Sum_probs=99.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcch-------hhhHHhhccCCE
Q 006490           14 RVVVVGDRGTGKSSLIAAAATESV-PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENK-------GKLNEELKRADA   85 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~ad~   85 (643)
                      +|+|+|+||||||||+|+|++... ..+++.++ .....+.+..++..+.+|||||+.+..       .....+++.+|+
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT-~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~   80 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTT-LTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADL   80 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCCCcc-ccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCE
Confidence            799999999999999999998762 33344322 112233444567889999999975432       123367899999


Q ss_pred             EEEEEECCCccc-HHHHHHHH----------------------------------------HHHHHhc------------
Q 006490           86 VVLTYACNQQST-LSRLSSYW----------------------------------------LPELRRL------------  112 (643)
Q Consensus        86 il~v~d~~~~~s-~~~~~~~~----------------------------------------~~~l~~~------------  112 (643)
                      +++|+|++++.. .+.+...+                                        ...++++            
T Consensus        81 il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~  160 (233)
T cd01896          81 ILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRED  160 (233)
T ss_pred             EEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEccC
Confidence            999999887642 22211100                                        1111111            


Q ss_pred             -------------CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHHHHHHHHH
Q 006490          113 -------------EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAV  175 (643)
Q Consensus       113 -------------~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~  175 (643)
                                   ...+|+++|+||+|+...       +....++..    .+++++||++|.|++++++.+.+.+
T Consensus       161 ~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~-------~~~~~~~~~----~~~~~~SA~~g~gi~~l~~~i~~~L  225 (233)
T cd01896         161 ITVDDLIDVIEGNRVYIPCLYVYNKIDLISI-------EELDLLARQ----PNSVVISAEKGLNLDELKERIWDKL  225 (233)
T ss_pred             CCHHHHHHHHhCCceEeeEEEEEECccCCCH-------HHHHHHhcC----CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence                         123699999999998642       112233332    2589999999999999999988764

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.63  E-value=7.9e-15  Score=162.62  Aligned_cols=159  Identities=16%  Similarity=0.215  Sum_probs=110.2

Q ss_pred             cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC--CcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhcc
Q 006490          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAP--TTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALAS  497 (643)
Q Consensus       420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~--t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~  497 (643)
                      ..+...|+|+|.+|+|||||+++|.+..+.....+  |.........+...+....+.+|||+|++.+..+  +..++..
T Consensus       241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~m--r~rg~~~  318 (742)
T CHL00189        241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSM--RSRGANV  318 (742)
T ss_pred             cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHH--HHHHHHH
Confidence            34567899999999999999999998877654433  2222222222333334577889999999988877  6778899


Q ss_pred             CCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHH------HHHhC-CCCcEEe
Q 006490          498 CDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARV------TQELG-IEPPIPV  570 (643)
Q Consensus       498 ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~------~~~~~-~~~~~~v  570 (643)
                      +|++++|+|++++...+.. +.+..+...      ++|+|+|+||+|+..... .+..+++      ...++ ..+++++
T Consensus       319 aDiaILVVDA~dGv~~QT~-E~I~~~k~~------~iPiIVViNKiDl~~~~~-e~v~~eL~~~~ll~e~~g~~vpvv~V  390 (742)
T CHL00189        319 TDIAILIIAADDGVKPQTI-EAINYIQAA------NVPIIVAINKIDKANANT-ERIKQQLAKYNLIPEKWGGDTPMIPI  390 (742)
T ss_pred             CCEEEEEEECcCCCChhhH-HHHHHHHhc------CceEEEEEECCCccccCH-HHHHHHHHHhccchHhhCCCceEEEE
Confidence            9999999999886442222 222233322      799999999999875321 1111122      22233 2369999


Q ss_pred             eeccC-CHHHHHHHHHHHH
Q 006490          571 SMKSK-DLNNVFSRIIWAA  588 (643)
Q Consensus       571 Sa~~g-~i~~l~~~l~~~~  588 (643)
                      ||++| |++++++.|....
T Consensus       391 SAktG~GIdeLle~I~~l~  409 (742)
T CHL00189        391 SASQGTNIDKLLETILLLA  409 (742)
T ss_pred             ECCCCCCHHHHHHhhhhhh
Confidence            99999 9999999998765

>cd00880 Era_like Era (E

Probab=99.63  E-value=3.9e-15  Score=137.02  Aligned_cols=152  Identities=21%  Similarity=0.182  Sum_probs=101.6

Q ss_pred             EEcCCCCCHHHHHHHHhcCCCCCC--CCCCCCCeeeCCccc-CCceeEEEEeCCCCCcchh-------hhHHhhccCCEE
Q 006490           17 VVGDRGTGKSSLIAAAATESVPEK--VPPVHAPTRLPPDFY-PDRVPVTIIDTSSSLENKG-------KLNEELKRADAV   86 (643)
Q Consensus        17 lvG~~~vGKSsL~n~l~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~ad~i   86 (643)
                      |+|++|+|||||+|++++......  .++..... ...... .....+.+|||||+.....       ....+++.+|++
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i   79 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDP-VEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLI   79 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccCCCCCcEECC-eEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence            589999999999999998764421  22211111 111112 2267899999999876543       333578999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhH
Q 006490           87 VLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (643)
Q Consensus        87 l~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  166 (643)
                      ++|+|+..........  +.......  +.|+++|+||+|+...... .................+++++||+++.|+.+
T Consensus        80 l~v~~~~~~~~~~~~~--~~~~~~~~--~~~~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~  154 (163)
T cd00880          80 LFVVDADLRADEEEEK--LLELLRER--GKPVLLVLNKIDLLPEEEE-EELLELRLLILLLLLGLPVIAVSALTGEGIDE  154 (163)
T ss_pred             EEEEeCCCCCCHHHHH--HHHHHHhc--CCeEEEEEEccccCChhhH-HHHHHHHHhhcccccCCceEEEeeeccCCHHH
Confidence            9999999887776653  34444444  8999999999998765433 11100011112222334799999999999999


Q ss_pred             HHHHHHHH
Q 006490          167 VFYYAQKA  174 (643)
Q Consensus       167 l~~~i~~~  174 (643)
                      +++++.+.
T Consensus       155 l~~~l~~~  162 (163)
T cd00880         155 LREALIEA  162 (163)
T ss_pred             HHHHHHhh
Confidence            99988764

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.63  E-value=2e-15  Score=145.69  Aligned_cols=151  Identities=18%  Similarity=0.049  Sum_probs=96.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCC--C----------------C------C-----CCCCee--eCCcccCCceeEE
Q 006490           14 RVVVVGDRGTGKSSLIAAAATESVPEK--V----------------P------P-----VHAPTR--LPPDFYPDRVPVT   62 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~~~~~~~--~----------------~------~-----~~~~~~--~~~~~~~~~~~~~   62 (643)
                      +|+|+|++|+|||||+++|+...-...  .                .      .     ..+.+.  ....+..++.++.
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~   80 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI   80 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence            589999999999999999986542111  0                0      0     001111  2233445677899


Q ss_pred             EEeCCCCCcchhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCcc--chhhhhh
Q 006490           63 IIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA--TSLEEVM  140 (643)
Q Consensus        63 i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~--~~~~~~~  140 (643)
                      +|||||+.++...+..+++.+|++|+|+|++.....+..  .....++... ..++|+|+||+|+......  ......+
T Consensus        81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~--~~~~~~~~~~-~~~iIvviNK~D~~~~~~~~~~~i~~~~  157 (208)
T cd04166          81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTR--RHSYILSLLG-IRHVVVAVNKMDLVDYSEEVFEEIVADY  157 (208)
T ss_pred             EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHH--HHHHHHHHcC-CCcEEEEEEchhcccCCHHHHHHHHHHH
Confidence            999999987766666788999999999998876432221  2333444441 2457889999998653211  0112233


Q ss_pred             hHHHHhhcc-cceEEEeCcccCCChhHH
Q 006490          141 GPIMQQFRE-IETCVECSATTMIQVPDV  167 (643)
Q Consensus       141 ~~~~~~~~~-~~~~~~~Sa~~~~gi~~l  167 (643)
                      +.+...++. ..+++++||++|.|+.+.
T Consensus       158 ~~~~~~~~~~~~~ii~iSA~~g~ni~~~  185 (208)
T cd04166         158 LAFAAKLGIEDITFIPISALDGDNVVSR  185 (208)
T ss_pred             HHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence            444445542 135899999999999853

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.63  E-value=3.7e-15  Score=162.82  Aligned_cols=156  Identities=21%  Similarity=0.197  Sum_probs=103.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC----CeeeCCccc--------------CCceeEEEEeCCCCCcchhh
Q 006490           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA----PTRLPPDFY--------------PDRVPVTIIDTSSSLENKGK   75 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~----~~~~~~~~~--------------~~~~~~~i~Dt~G~~~~~~~   75 (643)
                      -|+|+|++|+|||||+|+|.+..+....++..+    .+.......              .....+.+|||||++.+..+
T Consensus         6 iV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~l   85 (590)
T TIGR00491         6 IVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTNL   85 (590)
T ss_pred             EEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHHH
Confidence            599999999999999999999887555443111    111111110              11124899999999999888


Q ss_pred             hHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCcc---chh-------h----h---
Q 006490           76 LNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA---TSL-------E----E---  138 (643)
Q Consensus        76 ~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~---~~~-------~----~---  138 (643)
                      ...+++.+|++++|+|+++....+...  .+..++..  ++|+++|+||+|+......   ...       .    .   
T Consensus        86 ~~~~~~~aD~~IlVvD~~~g~~~qt~e--~i~~l~~~--~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~~~~  161 (590)
T TIGR00491        86 RKRGGALADLAILIVDINEGFKPQTQE--ALNILRMY--KTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQNLD  161 (590)
T ss_pred             HHHHHhhCCEEEEEEECCcCCCHhHHH--HHHHHHHc--CCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHHHHHH
Confidence            888999999999999998743333322  23344444  7899999999998642100   000       0    0   


Q ss_pred             -h----hhHHH------------HhhcccceEEEeCcccCCChhHHHHHHHH
Q 006490          139 -V----MGPIM------------QQFREIETCVECSATTMIQVPDVFYYAQK  173 (643)
Q Consensus       139 -~----~~~~~------------~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~  173 (643)
                       .    ...+.            ..++...+++++||++|+|+++|+.++..
T Consensus       162 ~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~  213 (590)
T TIGR00491       162 TKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAG  213 (590)
T ss_pred             HHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHH
Confidence             0    00111            12333357999999999999999987754

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=99.63  E-value=3.8e-15  Score=127.51  Aligned_cols=171  Identities=16%  Similarity=0.249  Sum_probs=143.3

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i  501 (643)
                      -.+||.++|++..|||||+-.++++++...+..+.+..+.-+.+.+.|....+.+||..|++++..+  .+-+.+++-++
T Consensus        19 Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~--lPiac~dsvaI   96 (205)
T KOG1673|consen   19 VSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINM--LPIACKDSVAI   96 (205)
T ss_pred             eEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhcc--CceeecCcEEE
Confidence            3589999999999999999999999988777678888888888988888888899999999877665  67788999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC----c--cccHHHHHHHHHHhCCCCcEEeeeccC
Q 006490          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP----Y--TMAVQDSARVTQELGIEPPIPVSMKSK  575 (643)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~----~--~~~~~~~~~~~~~~~~~~~~~vSa~~g  575 (643)
                      +++||.+.+.++..+..|++..+..+..   .+| |+|++|.|+--    +  .....+.+.+++.++.+ .+++|+.++
T Consensus        97 lFmFDLt~r~TLnSi~~WY~QAr~~Nkt---AiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAs-L~F~Sts~s  171 (205)
T KOG1673|consen   97 LFMFDLTRRSTLNSIKEWYRQARGLNKT---AIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNAS-LFFCSTSHS  171 (205)
T ss_pred             EEEEecCchHHHHHHHHHHHHHhccCCc---cce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCc-EEEeecccc
Confidence            9999999999999999999998877653   355 56899999632    1  12256777888888887 999999999


Q ss_pred             -CHHHHHHHHHHHHhCCCCCCCCcc
Q 006490          576 -DLNNVFSRIIWAAEHPHLNIPETE  599 (643)
Q Consensus       576 -~i~~l~~~l~~~~~~~~~~~~~~~  599 (643)
                       |+.++|.-+...+......+|+..
T Consensus       172 INv~KIFK~vlAklFnL~~ti~~~~  196 (205)
T KOG1673|consen  172 INVQKIFKIVLAKLFNLPWTIPEIL  196 (205)
T ss_pred             ccHHHHHHHHHHHHhCCceeccccc
Confidence             999999999988877766666543

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.62  E-value=1.6e-14  Score=137.17  Aligned_cols=146  Identities=18%  Similarity=0.182  Sum_probs=96.6

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcC------CCCCCCC-----C---CcccceEEEEEEcCCCcEEEEEEecCCchhhhhh
Q 006490          423 VFRCLLFGPQNAGKSALLNSFLER------PFSENYA-----P---TTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKI  488 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~~~------~~~~~~~-----~---t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~  488 (643)
                      .++|+++|.+++|||||+++|++.      .....+.     +   ..+................+.++||+|...+..-
T Consensus         2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~   81 (195)
T cd01884           2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN   81 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence            378999999999999999999864      1111110     0   0011111222222224556778999998766554


Q ss_pred             hccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCc-EEEEEeCCCCCCcccc----HHHHHHHHHHhC
Q 006490          489 LSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVP-CLLIASKDDLKPYTMA----VQDSARVTQELG  563 (643)
Q Consensus       489 ~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~p-vilv~NK~Dl~~~~~~----~~~~~~~~~~~~  563 (643)
                        ....+..+|++++|+|++.+.. ......+..+...      ++| +|+++||+|+..+...    .+++..+...++
T Consensus        82 --~~~~~~~~D~~ilVvda~~g~~-~~~~~~~~~~~~~------~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g  152 (195)
T cd01884          82 --MITGAAQMDGAILVVSATDGPM-PQTREHLLLARQV------GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYG  152 (195)
T ss_pred             --HHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc------CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhc
Confidence              5778899999999999988644 3344444455444      677 7789999999643322    335566666666


Q ss_pred             C----CCcEEeeeccC-CH
Q 006490          564 I----EPPIPVSMKSK-DL  577 (643)
Q Consensus       564 ~----~~~~~vSa~~g-~i  577 (643)
                      +    .+++++||++| |+
T Consensus       153 ~~~~~v~iipiSa~~g~n~  171 (195)
T cd01884         153 FDGDNTPIVRGSALKALEG  171 (195)
T ss_pred             ccccCCeEEEeeCccccCC
Confidence            5    36999999999 85

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.62  E-value=6.2e-15  Score=139.95  Aligned_cols=151  Identities=17%  Similarity=0.166  Sum_probs=99.8

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCC--------C---CCCCC---CCCCee--eCCcccCCceeEEEEeCCCCCcchh
Q 006490           11 TGVRVVVVGDRGTGKSSLIAAAATESV--------P---EKVPP---VHAPTR--LPPDFYPDRVPVTIIDTSSSLENKG   74 (643)
Q Consensus        11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~--------~---~~~~~---~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~   74 (643)
                      ++++|+++|++++|||||+++|+...-        .   .+..+   ..+.+.  ....+..++..+.++||||+..+..
T Consensus         1 ~~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~   80 (195)
T cd01884           1 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIK   80 (195)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHH
Confidence            357899999999999999999986410        0   00000   011111  2233445678899999999988877


Q ss_pred             hhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCc-EEEEEecccCCCCCccc-hhhhhhhHHHHhhcc---
Q 006490           75 KLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVP-IIVAGCKLDLRGDHNAT-SLEEVMGPIMQQFRE---  149 (643)
Q Consensus        75 ~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p-vilv~NK~D~~~~~~~~-~~~~~~~~~~~~~~~---  149 (643)
                      .....+..+|++++|+|+.......  ....+..+...  ++| +|+|+||+|+....... ...+.+..+...++.   
T Consensus        81 ~~~~~~~~~D~~ilVvda~~g~~~~--~~~~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~  156 (195)
T cd01884          81 NMITGAAQMDGAILVVSATDGPMPQ--TREHLLLARQV--GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGD  156 (195)
T ss_pred             HHHHHhhhCCEEEEEEECCCCCcHH--HHHHHHHHHHc--CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhccccc
Confidence            7788899999999999987653322  22456666666  676 78999999986432210 112233444444432   


Q ss_pred             cceEEEeCcccCCChh
Q 006490          150 IETCVECSATTMIQVP  165 (643)
Q Consensus       150 ~~~~~~~Sa~~~~gi~  165 (643)
                      ..+++++||.+|.|+.
T Consensus       157 ~v~iipiSa~~g~n~~  172 (195)
T cd01884         157 NTPIVRGSALKALEGD  172 (195)
T ss_pred             CCeEEEeeCccccCCC
Confidence            1369999999999864

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.62  E-value=2.9e-15  Score=165.16  Aligned_cols=145  Identities=19%  Similarity=0.148  Sum_probs=103.6

Q ss_pred             cCCCCCHHHHHHHHhcCCC-CCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhh------hHHhh--ccCCEEEEE
Q 006490           19 GDRGTGKSSLIAAAATESV-PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGK------LNEEL--KRADAVVLT   89 (643)
Q Consensus        19 G~~~vGKSsL~n~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~------~~~~~--~~ad~il~v   89 (643)
                      |+||||||||+|+|++..+ +.++|+++.. .....+..++..+++|||||+.++...      ...++  +.+|++++|
T Consensus         1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~-~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~V   79 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQTVGNWPGVTVE-KKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNV   79 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCCeecCCCCeEEE-EEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEE
Confidence            8999999999999999875 4445553221 122334445677999999998865432      22333  479999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHHH
Q 006490           90 YACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY  169 (643)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  169 (643)
                      +|.++.+..   . ++..++.+.  ++|+++|+||+|+.+.... .  ...+.+.+.++  .+++++||++|.|++++++
T Consensus        80 vDat~ler~---l-~l~~ql~~~--~~PiIIVlNK~Dl~~~~~i-~--~d~~~L~~~lg--~pvv~tSA~tg~Gi~eL~~  148 (591)
T TIGR00437        80 VDASNLERN---L-YLTLQLLEL--GIPMILALNLVDEAEKKGI-R--IDEEKLEERLG--VPVVPTSATEGRGIERLKD  148 (591)
T ss_pred             ecCCcchhh---H-HHHHHHHhc--CCCEEEEEehhHHHHhCCC-h--hhHHHHHHHcC--CCEEEEECCCCCCHHHHHH
Confidence            998874322   1 244444444  7999999999998654433 2  23466677776  3799999999999999999


Q ss_pred             HHHHHH
Q 006490          170 YAQKAV  175 (643)
Q Consensus       170 ~i~~~~  175 (643)
                      .+.+..
T Consensus       149 ~i~~~~  154 (591)
T TIGR00437       149 AIRKAI  154 (591)
T ss_pred             HHHHHh
Confidence            998764

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.61  E-value=1.9e-14  Score=161.14  Aligned_cols=158  Identities=19%  Similarity=0.229  Sum_probs=108.7

Q ss_pred             cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCC
Q 006490          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (643)
Q Consensus       420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad  499 (643)
                      ..++..|+|+|..|+|||||+++|.+..+.....+.++.+.....+.+.+  ..+.+|||+|++.|..+  +...+..+|
T Consensus       287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m--~~rga~~aD  362 (787)
T PRK05306        287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAM--RARGAQVTD  362 (787)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhH--HHhhhhhCC
Confidence            34567899999999999999999998776544433333333334455552  56778999999988777  567789999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccc--cHHHHH---HHHHHhC-CCCcEEeeec
Q 006490          500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM--AVQDSA---RVTQELG-IEPPIPVSMK  573 (643)
Q Consensus       500 ~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~--~~~~~~---~~~~~~~-~~~~~~vSa~  573 (643)
                      ++|+|+|++++..-+. ...+..+...      ++|+|+++||+|+.....  ......   .+...++ ..+++++||+
T Consensus       363 iaILVVdAddGv~~qT-~e~i~~a~~~------~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAk  435 (787)
T PRK05306        363 IVVLVVAADDGVMPQT-IEAINHAKAA------GVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSAK  435 (787)
T ss_pred             EEEEEEECCCCCCHhH-HHHHHHHHhc------CCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeCC
Confidence            9999999998543222 2222333322      899999999999965221  111111   1122333 2359999999


Q ss_pred             cC-CHHHHHHHHHHHH
Q 006490          574 SK-DLNNVFSRIIWAA  588 (643)
Q Consensus       574 ~g-~i~~l~~~l~~~~  588 (643)
                      +| |++++++.|....
T Consensus       436 tG~GI~eLle~I~~~~  451 (787)
T PRK05306        436 TGEGIDELLEAILLQA  451 (787)
T ss_pred             CCCCchHHHHhhhhhh
Confidence            99 9999999987643

>cd00880 Era_like Era (E

Probab=99.60  E-value=1.6e-14  Score=132.99  Aligned_cols=152  Identities=25%  Similarity=0.241  Sum_probs=101.8

Q ss_pred             EEcCCCCCHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCcEEEEEEecCCchhhhhh-----hccHHhhccCCEE
Q 006490          428 LFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKI-----LSNKEALASCDVT  501 (643)
Q Consensus       428 ivG~~nvGKSSLln~l~~~~~~~~~~-~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~-----~~~~~~~~~ad~i  501 (643)
                      |+|++|+|||||+|++++........ +++............ ....+.+||++|.......     ......+..+|++
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i   79 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELG-PLGPVVLIDTPGIDEAGGLGREREELARRVLERADLI   79 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEec-CCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence            58999999999999999976653332 322222223333333 2556788999996544321     1134577899999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHH---HHHHHHhCCCCcEEeeeccC-CH
Q 006490          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDS---ARVTQELGIEPPIPVSMKSK-DL  577 (643)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~---~~~~~~~~~~~~~~vSa~~g-~i  577 (643)
                      ++|+|++++.+..... +.......      +.|+++|+||+|+..........   ..........+++++||+++ |+
T Consensus        80 l~v~~~~~~~~~~~~~-~~~~~~~~------~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v  152 (163)
T cd00880          80 LFVVDADLRADEEEEK-LLELLRER------GKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGI  152 (163)
T ss_pred             EEEEeCCCCCCHHHHH-HHHHHHhc------CCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCH
Confidence            9999999986655443 33333333      89999999999998754332221   11222233346999999999 99


Q ss_pred             HHHHHHHHHH
Q 006490          578 NNVFSRIIWA  587 (643)
Q Consensus       578 ~~l~~~l~~~  587 (643)
                      +++++++.+.
T Consensus       153 ~~l~~~l~~~  162 (163)
T cd00880         153 DELREALIEA  162 (163)
T ss_pred             HHHHHHHHhh
Confidence            9999998865

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.60  E-value=4.7e-15  Score=159.03  Aligned_cols=159  Identities=19%  Similarity=0.137  Sum_probs=103.2

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCC------------C-----------------CCCCee--eCCcccCC
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVP------------P-----------------VHAPTR--LPPDFYPD   57 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~------------~-----------------~~~~~~--~~~~~~~~   57 (643)
                      .++.++|+++|++++|||||+++|+...-.....            +                 ..+.|.  ....+..+
T Consensus         3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~   82 (425)
T PRK12317          3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD   82 (425)
T ss_pred             CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence            4667999999999999999999998543111000            0                 011111  22345567


Q ss_pred             ceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCcc--ch
Q 006490           58 RVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA--TS  135 (643)
Q Consensus        58 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~--~~  135 (643)
                      ++.+.+|||||++++.......+..+|++|+|+|+++..+.......++..+.... ..|+++|+||+|+......  ..
T Consensus        83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~-~~~iivviNK~Dl~~~~~~~~~~  161 (425)
T PRK12317         83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLG-INQLIVAINKMDAVNYDEKRYEE  161 (425)
T ss_pred             CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcC-CCeEEEEEEccccccccHHHHHH
Confidence            88999999999988776666678899999999999873222222222444444442 2469999999999753211  01


Q ss_pred             hhhhhhHHHHhhcc---cceEEEeCcccCCChhHHH
Q 006490          136 LEEVMGPIMQQFRE---IETCVECSATTMIQVPDVF  168 (643)
Q Consensus       136 ~~~~~~~~~~~~~~---~~~~~~~Sa~~~~gi~~l~  168 (643)
                      ..+.+..+...++.   ..+++++||++|.|++++.
T Consensus       162 ~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~  197 (425)
T PRK12317        162 VKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS  197 (425)
T ss_pred             HHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence            12233444444442   1368999999999998754

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.60  E-value=1.4e-14  Score=134.96  Aligned_cols=156  Identities=19%  Similarity=0.142  Sum_probs=98.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcc----------hhhhHHhhc--
Q 006490           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLEN----------KGKLNEELK--   81 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~~~--   81 (643)
                      .|+++|++|||||||+|++++..+.....++.+.+.....+..++ .+.+|||||+...          ......++.  
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~   79 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND-KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENR   79 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC-eEEEecCCCccccccCHHHHHHHHHHHHHHHHhC
Confidence            389999999999999999997665444444333333211222222 8999999996542          222233343  


Q ss_pred             -cCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCccc
Q 006490           82 -RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATT  160 (643)
Q Consensus        82 -~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  160 (643)
                       ..+++++++|.+...+....  ....++...  +.|+++|+||+|+.................+......+++++||++
T Consensus        80 ~~~~~~~~v~d~~~~~~~~~~--~~~~~l~~~--~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~  155 (170)
T cd01876          80 ENLKGVVLLIDSRHGPTEIDL--EMLDWLEEL--GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLK  155 (170)
T ss_pred             hhhhEEEEEEEcCcCCCHhHH--HHHHHHHHc--CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecCC
Confidence             35789999998766433322  245555555  6899999999998643221011112222222112224689999999


Q ss_pred             CCChhHHHHHHHHH
Q 006490          161 MIQVPDVFYYAQKA  174 (643)
Q Consensus       161 ~~gi~~l~~~i~~~  174 (643)
                      +.|+.++++++.+.
T Consensus       156 ~~~~~~l~~~l~~~  169 (170)
T cd01876         156 GQGIDELRALIEKW  169 (170)
T ss_pred             CCCHHHHHHHHHHh
Confidence            99999999988764

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.60  E-value=2.3e-14  Score=131.24  Aligned_cols=158  Identities=18%  Similarity=0.174  Sum_probs=107.4

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcc----------hhhhHHhh
Q 006490           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLEN----------KGKLNEEL   80 (643)
Q Consensus        11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~~   80 (643)
                      ...-||++|++|||||||+|+|+++.-....+.+++.|+....+..++ .+.++|.||..-.          ......|+
T Consensus        23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~-~~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL  101 (200)
T COG0218          23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDD-ELRLVDLPGYGYAKVPKEVKEKWKKLIEEYL  101 (200)
T ss_pred             CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecC-cEEEEeCCCcccccCCHHHHHHHHHHHHHHH
Confidence            445799999999999999999999773333444455776555555544 3899999997621          12333555


Q ss_pred             cc---CCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcc----cceE
Q 006490           81 KR---ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE----IETC  153 (643)
Q Consensus        81 ~~---ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~----~~~~  153 (643)
                      +.   -.++++++|+..+..  ..+.+.++++...  ++|+++|.||+|.......   ...+..+++.+..    ...+
T Consensus       102 ~~R~~L~~vvlliD~r~~~~--~~D~em~~~l~~~--~i~~~vv~tK~DKi~~~~~---~k~l~~v~~~l~~~~~~~~~~  174 (200)
T COG0218         102 EKRANLKGVVLLIDARHPPK--DLDREMIEFLLEL--GIPVIVVLTKADKLKKSER---NKQLNKVAEELKKPPPDDQWV  174 (200)
T ss_pred             hhchhheEEEEEEECCCCCc--HHHHHHHHHHHHc--CCCeEEEEEccccCChhHH---HHHHHHHHHHhcCCCCccceE
Confidence            44   467888899655544  3344588888887  8999999999998875332   2222333333321    1127


Q ss_pred             EEeCcccCCChhHHHHHHHHHHh
Q 006490          154 VECSATTMIQVPDVFYYAQKAVL  176 (643)
Q Consensus       154 ~~~Sa~~~~gi~~l~~~i~~~~~  176 (643)
                      +..|+..+.|++++...|...+.
T Consensus       175 ~~~ss~~k~Gi~~l~~~i~~~~~  197 (200)
T COG0218         175 VLFSSLKKKGIDELKAKILEWLK  197 (200)
T ss_pred             EEEecccccCHHHHHHHHHHHhh
Confidence            88999999999999888776543

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.60  E-value=1.1e-14  Score=140.59  Aligned_cols=145  Identities=22%  Similarity=0.238  Sum_probs=94.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCC-------------------------------CCcccceEEEEEEcCCCcEE
Q 006490          425 RCLLFGPQNAGKSALLNSFLERPFSENYA-------------------------------PTTGEQYAVNVVDQPGGNKK  473 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~~~~~~~~-------------------------------~t~~~~~~~~~v~~~g~~~~  473 (643)
                      +|+|+|.+|+|||||+++|+.....+...                               ..++.+.....+..  ....
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~--~~~~   78 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFST--PKRK   78 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEec--CCce
Confidence            58999999999999999998755443310                               11111122223333  3446


Q ss_pred             EEEEecCCchhhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCC-CcEEEEEeCCCCCCccc--
Q 006490          474 TLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYG-VPCLLIASKDDLKPYTM--  550 (643)
Q Consensus       474 ~~i~d~~g~~~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~-~pvilv~NK~Dl~~~~~--  550 (643)
                      +.++||+|++.+...  ....+..+|++++|+|++++.. .........+...      + .++|+|+||+|+.....  
T Consensus        79 ~~liDTpG~~~~~~~--~~~~~~~ad~~llVvD~~~~~~-~~~~~~~~~~~~~------~~~~iIvviNK~D~~~~~~~~  149 (208)
T cd04166          79 FIIADTPGHEQYTRN--MVTGASTADLAILLVDARKGVL-EQTRRHSYILSLL------GIRHVVVAVNKMDLVDYSEEV  149 (208)
T ss_pred             EEEEECCcHHHHHHH--HHHhhhhCCEEEEEEECCCCcc-HhHHHHHHHHHHc------CCCcEEEEEEchhcccCCHHH
Confidence            778999998776543  4567899999999999998643 2222222222222      3 45788999999874221  


Q ss_pred             ---cHHHHHHHHHHhCCC--CcEEeeeccC-CHHHH
Q 006490          551 ---AVQDSARVTQELGIE--PPIPVSMKSK-DLNNV  580 (643)
Q Consensus       551 ---~~~~~~~~~~~~~~~--~~~~vSa~~g-~i~~l  580 (643)
                         .....+++.+.+++.  +++++||++| |+.+.
T Consensus       150 ~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~  185 (208)
T cd04166         150 FEEIVADYLAFAAKLGIEDITFIPISALDGDNVVSR  185 (208)
T ss_pred             HHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence               134555666777754  4899999999 98754

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.59  E-value=3.2e-14  Score=151.96  Aligned_cols=152  Identities=21%  Similarity=0.262  Sum_probs=112.6

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhh------hhhhccHHhh--
Q 006490          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV------KKILSNKEAL--  495 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~------~~~~~~~~~~--  495 (643)
                      .+|+++|.||||||||+|+|+|.......-|..+.+...-.....|  ..+.++|.+|...+      +.+  +.+++  
T Consensus         4 ~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~--~~i~ivDLPG~YSL~~~S~DE~V--ar~~ll~   79 (653)
T COG0370           4 LTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKG--HEIEIVDLPGTYSLTAYSEDEKV--ARDFLLE   79 (653)
T ss_pred             ceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecC--ceEEEEeCCCcCCCCCCCchHHH--HHHHHhc
Confidence            4699999999999999999999765444446544444444444442  23566777773322      223  34444  


Q ss_pred             ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC
Q 006490          496 ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK  575 (643)
Q Consensus       496 ~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g  575 (643)
                      .++|+++-|+|+++-   +.-...-.++.+.      ++|++++.|++|..+++...-..+.+.+.+|++ ++++||++|
T Consensus        80 ~~~D~ivnVvDAtnL---eRnLyltlQLlE~------g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGvP-Vv~tvA~~g  149 (653)
T COG0370          80 GKPDLIVNVVDATNL---ERNLYLTLQLLEL------GIPMILALNMIDEAKKRGIRIDIEKLSKLLGVP-VVPTVAKRG  149 (653)
T ss_pred             CCCCEEEEEcccchH---HHHHHHHHHHHHc------CCCeEEEeccHhhHHhcCCcccHHHHHHHhCCC-EEEEEeecC
Confidence            468999999999985   3333344445555      899999999999988777778889999999998 999999999


Q ss_pred             -CHHHHHHHHHHHHh
Q 006490          576 -DLNNVFSRIIWAAE  589 (643)
Q Consensus       576 -~i~~l~~~l~~~~~  589 (643)
                       |++++.+.+.+...
T Consensus       150 ~G~~~l~~~i~~~~~  164 (653)
T COG0370         150 EGLEELKRAIIELAE  164 (653)
T ss_pred             CCHHHHHHHHHHhcc
Confidence             99999999876443

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=99.59  E-value=3.1e-15  Score=128.06  Aligned_cols=163  Identities=19%  Similarity=0.255  Sum_probs=126.1

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEE
Q 006490           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (643)
Q Consensus        11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (643)
                      -.+||.++|++.+|||||.-.++++.+.+.+..+.+...  ....+.+..+.+.|||.+|++++.++.+.+..++-+++|
T Consensus        19 Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlF   98 (205)
T KOG1673|consen   19 VSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILF   98 (205)
T ss_pred             eEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEE
Confidence            358999999999999999999999887655444344333  333444567889999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCcc---chhhhhhhHHHHhhcccceEEEeCcccCCChh
Q 006490           89 TYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA---TSLEEVMGPIMQQFREIETCVECSATTMIQVP  165 (643)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  165 (643)
                      +||.+.+.++..+.+ |.+..+..+...--|+||+|-|+--.-..   .......+.+++-...  +.+.||+.++.||+
T Consensus        99 mFDLt~r~TLnSi~~-WY~QAr~~NktAiPilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnA--sL~F~Sts~sINv~  175 (205)
T KOG1673|consen   99 MFDLTRRSTLNSIKE-WYRQARGLNKTAIPILVGTKYDLFIDLPPELQETISRQARKYAKVMNA--SLFFCSTSHSINVQ  175 (205)
T ss_pred             EEecCchHHHHHHHH-HHHHHhccCCccceEEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCC--cEEEeeccccccHH
Confidence            999999999999985 99999887544445689999996433211   0222333445555543  68999999999999


Q ss_pred             HHHHHHHHHHh
Q 006490          166 DVFYYAQKAVL  176 (643)
Q Consensus       166 ~l~~~i~~~~~  176 (643)
                      .+|..+..++.
T Consensus       176 KIFK~vlAklF  186 (205)
T KOG1673|consen  176 KIFKIVLAKLF  186 (205)
T ss_pred             HHHHHHHHHHh
Confidence            99998877764

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.58  E-value=2.4e-14  Score=156.50  Aligned_cols=156  Identities=17%  Similarity=0.190  Sum_probs=99.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCC----------------CcEEEEEEecCCchhhhh
Q 006490          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPG----------------GNKKTLILQEIPEEGVKK  487 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g----------------~~~~~~i~d~~g~~~~~~  487 (643)
                      .-|+|+|++|+|||||+|+|.+..+......+++.+.....+..+.                ....+.+|||+|++.+..
T Consensus         5 piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~   84 (590)
T TIGR00491         5 PIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTN   84 (590)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHH
Confidence            3699999999999999999999876543332222211111111110                011367899999998888


Q ss_pred             hhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccc--------------cH-
Q 006490          488 ILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM--------------AV-  552 (643)
Q Consensus       488 ~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~--------------~~-  552 (643)
                      +  +..++..+|++++|+|++++.+.+. ...+..+...      +.|+++|+||+|+.....              .. 
T Consensus        85 l--~~~~~~~aD~~IlVvD~~~g~~~qt-~e~i~~l~~~------~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~  155 (590)
T TIGR00491        85 L--RKRGGALADLAILIVDINEGFKPQT-QEALNILRMY------KTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQ  155 (590)
T ss_pred             H--HHHHHhhCCEEEEEEECCcCCCHhH-HHHHHHHHHc------CCCEEEEEECCCccchhhhccCchHHHHHHhhhHH
Confidence            7  6678899999999999998433222 1222223322      789999999999964210              00 


Q ss_pred             --HH--------HHHHHHH-------------hCCCCcEEeeeccC-CHHHHHHHHHHHH
Q 006490          553 --QD--------SARVTQE-------------LGIEPPIPVSMKSK-DLNNVFSRIIWAA  588 (643)
Q Consensus       553 --~~--------~~~~~~~-------------~~~~~~~~vSa~~g-~i~~l~~~l~~~~  588 (643)
                        ..        ..++.+.             .+..+++++||++| |++++++++....
T Consensus       156 v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~  215 (590)
T TIGR00491       156 VQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA  215 (590)
T ss_pred             HHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence              00        0111111             12236899999999 9999999887543

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.58  E-value=1e-14  Score=127.86  Aligned_cols=165  Identities=19%  Similarity=0.229  Sum_probs=122.7

Q ss_pred             cCceEEEEEEcCCCCCHHHHHHHHhcCCC---CC--CCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHh
Q 006490          420 ERNVFRCLLFGPQNAGKSALLNSFLERPF---SE--NYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEA  494 (643)
Q Consensus       420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~---~~--~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~  494 (643)
                      .+..+-|+|+|.-|+|||||+.++-...-   ..  .+.-|++.....-.+++.  .....+||-.|++...++  +..+
T Consensus        14 ~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~--~~~l~fwdlgGQe~lrSl--w~~y   89 (197)
T KOG0076|consen   14 KKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVC--NAPLSFWDLGGQESLRSL--WKKY   89 (197)
T ss_pred             hhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeec--cceeEEEEcCChHHHHHH--HHHH
Confidence            34567899999999999999998764321   11  111245555556666665  456778999999999999  9999


Q ss_pred             hccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHH---HHhCCC--CcEE
Q 006490          495 LASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVT---QELGIE--PPIP  569 (643)
Q Consensus       495 ~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~---~~~~~~--~~~~  569 (643)
                      +..||++++++|+++++.|+........+.......  +.|+++.+||.|+.+.... .+++...   ...+-+  ++.+
T Consensus        90 Y~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~le--g~p~L~lankqd~q~~~~~-~El~~~~~~~e~~~~rd~~~~p  166 (197)
T KOG0076|consen   90 YWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLE--GAPVLVLANKQDLQNAMEA-AELDGVFGLAELIPRRDNPFQP  166 (197)
T ss_pred             HHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhc--CCchhhhcchhhhhhhhhH-HHHHHHhhhhhhcCCccCcccc
Confidence            999999999999999988888877776665544333  8999999999998773322 2222222   222222  5899


Q ss_pred             eeeccC-CHHHHHHHHHHHHhCC
Q 006490          570 VSMKSK-DLNNVFSRIIWAAEHP  591 (643)
Q Consensus       570 vSa~~g-~i~~l~~~l~~~~~~~  591 (643)
                      |||.+| ||++-.+++.+.....
T Consensus       167 vSal~gegv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  167 VSALTGEGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             chhhhcccHHHHHHHHHHHHhhc
Confidence            999999 9999999999988644

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=99.58  E-value=7.8e-14  Score=119.29  Aligned_cols=167  Identities=18%  Similarity=0.186  Sum_probs=125.9

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCC---CCCCCCCeeeCCcccCC-ceeEEEEeCCCCCcc-hhhhHHhhccC
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEK---VPPVHAPTRLPPDFYPD-RVPVTIIDTSSSLEN-KGKLNEELKRA   83 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~i~Dt~G~~~~-~~~~~~~~~~a   83 (643)
                      .-+..||+++|-.+||||+++..|+..+.+..   .|+....+....+.+.+ .-.+.++||.|...+ ..+-..++.-+
T Consensus         6 mGk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~a   85 (198)
T KOG3883|consen    6 MGKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFA   85 (198)
T ss_pred             hCcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccC
Confidence            34568999999999999999999998775443   23332233332232222 334899999999877 34445788889


Q ss_pred             CEEEEEEECCCcccHHHHHHHHHHHHHhcC--CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccC
Q 006490           84 DAVVLTYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM  161 (643)
Q Consensus        84 d~il~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  161 (643)
                      |++++|||..+++||+.+.. +.++|.+..  ..+||++.+||+|+.+...+  ..+....|++.-.  ...++++|.+.
T Consensus        86 DafVLVYs~~d~eSf~rv~l-lKk~Idk~KdKKEvpiVVLaN~rdr~~p~~v--d~d~A~~Wa~rEk--vkl~eVta~dR  160 (198)
T KOG3883|consen   86 DAFVLVYSPMDPESFQRVEL-LKKEIDKHKDKKEVPIVVLANKRDRAEPREV--DMDVAQIWAKREK--VKLWEVTAMDR  160 (198)
T ss_pred             ceEEEEecCCCHHHHHHHHH-HHHHHhhccccccccEEEEechhhcccchhc--CHHHHHHHHhhhh--eeEEEEEeccc
Confidence            99999999999999999873 777776542  36899999999999876655  4455667776654  36899999999


Q ss_pred             CChhHHHHHHHHHHhCCCC
Q 006490          162 IQVPDVFYYAQKAVLHPTA  180 (643)
Q Consensus       162 ~gi~~l~~~i~~~~~~~~~  180 (643)
                      ..+-+.|..+...+..+..
T Consensus       161 ~sL~epf~~l~~rl~~pqs  179 (198)
T KOG3883|consen  161 PSLYEPFTYLASRLHQPQS  179 (198)
T ss_pred             hhhhhHHHHHHHhccCCcc
Confidence            9999999999988876654

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.58  E-value=2e-14  Score=141.53  Aligned_cols=92  Identities=13%  Similarity=0.122  Sum_probs=70.1

Q ss_pred             CcchhhhHHhhccCCEEEEEEECCCcc-cHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhc
Q 006490           70 LENKGKLNEELKRADAVVLTYACNQQS-TLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR  148 (643)
Q Consensus        70 ~~~~~~~~~~~~~ad~il~v~d~~~~~-s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~  148 (643)
                      +++..+.+.+++++|.+++|||++++. +++.+. +|+..+...  ++|+++|+||+|+......  ..+..+.+. ..+
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~-r~l~~~~~~--~i~~vIV~NK~DL~~~~~~--~~~~~~~~~-~~g   97 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLD-RFLVVAEAQ--NIEPIIVLNKIDLLDDEDM--EKEQLDIYR-NIG   97 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHHH-HHHHHHHHC--CCCEEEEEECcccCCCHHH--HHHHHHHHH-HCC
Confidence            456667778999999999999999887 888887 588877654  8999999999999654322  222333332 333


Q ss_pred             ccceEEEeCcccCCChhHHHH
Q 006490          149 EIETCVECSATTMIQVPDVFY  169 (643)
Q Consensus       149 ~~~~~~~~Sa~~~~gi~~l~~  169 (643)
                        .+++++||++|.|++++|+
T Consensus        98 --~~v~~~SAktg~gi~eLf~  116 (245)
T TIGR00157        98 --YQVLMTSSKNQDGLKELIE  116 (245)
T ss_pred             --CeEEEEecCCchhHHHHHh
Confidence              3689999999999998886

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.58  E-value=3.3e-14  Score=156.84  Aligned_cols=158  Identities=18%  Similarity=0.170  Sum_probs=110.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC--CCC-----CCCCC------CCCee----eCCcc---cCCceeEEEEeCCCCCcch
Q 006490           14 RVVVVGDRGTGKSSLIAAAATES--VPE-----KVPPV------HAPTR----LPPDF---YPDRVPVTIIDTSSSLENK   73 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~~~--~~~-----~~~~~------~~~~~----~~~~~---~~~~~~~~i~Dt~G~~~~~   73 (643)
                      +|+|+|+.++|||||+.+|+...  +..     .....      .+.+.    ....+   +..++.+++|||||+.++.
T Consensus         9 Ni~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF~   88 (600)
T PRK05433          9 NFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDFS   88 (600)
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHHH
Confidence            59999999999999999998642  111     00000      00110    11111   3446889999999999998


Q ss_pred             hhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhccc-ce
Q 006490           74 GKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREI-ET  152 (643)
Q Consensus        74 ~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~  152 (643)
                      ..+..+++.+|++|+|+|+++....+... .|... ...  ++|+++|+||+|+....    .+....++.+.++.. ..
T Consensus        89 ~~v~~sl~~aD~aILVVDas~gv~~qt~~-~~~~~-~~~--~lpiIvViNKiDl~~a~----~~~v~~ei~~~lg~~~~~  160 (600)
T PRK05433         89 YEVSRSLAACEGALLVVDASQGVEAQTLA-NVYLA-LEN--DLEIIPVLNKIDLPAAD----PERVKQEIEDVIGIDASD  160 (600)
T ss_pred             HHHHHHHHHCCEEEEEEECCCCCCHHHHH-HHHHH-HHC--CCCEEEEEECCCCCccc----HHHHHHHHHHHhCCCcce
Confidence            88999999999999999998876655543 24332 333  78999999999986432    222233444444311 14


Q ss_pred             EEEeCcccCCChhHHHHHHHHHHhCCC
Q 006490          153 CVECSATTMIQVPDVFYYAQKAVLHPT  179 (643)
Q Consensus       153 ~~~~Sa~~~~gi~~l~~~i~~~~~~~~  179 (643)
                      ++++||++|.|++++++++.+.+..+.
T Consensus       161 vi~iSAktG~GI~~Ll~~I~~~lp~P~  187 (600)
T PRK05433        161 AVLVSAKTGIGIEEVLEAIVERIPPPK  187 (600)
T ss_pred             EEEEecCCCCCHHHHHHHHHHhCcccc
Confidence            899999999999999999998876553

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.57  E-value=3.9e-15  Score=130.52  Aligned_cols=167  Identities=14%  Similarity=0.144  Sum_probs=121.0

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCC---CCCC----CCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhc
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATES---VPEK----VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELK   81 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~---~~~~----~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~   81 (643)
                      .+..+.|+|+|..|+|||||+.++-...   +..-    ..++.+-  ..+.+...+.++.+||.+|++...+++..+|.
T Consensus        14 ~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgL--nig~i~v~~~~l~fwdlgGQe~lrSlw~~yY~   91 (197)
T KOG0076|consen   14 KKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGL--NIGTIEVCNAPLSFWDLGGQESLRSLWKKYYW   91 (197)
T ss_pred             hhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccce--eecceeeccceeEEEEcCChHHHHHHHHHHHH
Confidence            4567889999999999999998775432   2111    1111111  23344455778999999999999999999999


Q ss_pred             cCCEEEEEEECCCcccHHHHHHHHHHHHHh-cCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcc-cceEEEeCcc
Q 006490           82 RADAVVLTYACNQQSTLSRLSSYWLPELRR-LEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE-IETCVECSAT  159 (643)
Q Consensus        82 ~ad~il~v~d~~~~~s~~~~~~~~~~~l~~-~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~  159 (643)
                      .+|++++|||+++++.++...+.+-..+.. .-.+.|+++.+||-|+.+.-.....+..... ....+. ..++.+|||.
T Consensus        92 ~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~-~e~~~~rd~~~~pvSal  170 (197)
T KOG0076|consen   92 LAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGL-AELIPRRDNPFQPVSAL  170 (197)
T ss_pred             HhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhh-hhhcCCccCccccchhh
Confidence            999999999999999998887755555533 2348999999999999765332111111111 222322 2368999999


Q ss_pred             cCCChhHHHHHHHHHHhCC
Q 006490          160 TMIQVPDVFYYAQKAVLHP  178 (643)
Q Consensus       160 ~~~gi~~l~~~i~~~~~~~  178 (643)
                      +|+||++..+|+.+.+...
T Consensus       171 ~gegv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  171 TGEGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             hcccHHHHHHHHHHHHhhc
Confidence            9999999999999987654

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.57  E-value=1.2e-14  Score=150.61  Aligned_cols=190  Identities=20%  Similarity=0.245  Sum_probs=133.8

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (643)
                      +..+||+++|+.|||||||+-+|+..++...-++-... +.+-.--++ ......+.|+...+.....  ....+++||+
T Consensus         7 ~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~-i~IPadvtP-e~vpt~ivD~ss~~~~~~~--l~~EirkA~v   82 (625)
T KOG1707|consen    7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPR-ILIPADVTP-ENVPTSIVDTSSDSDDRLC--LRKEIRKADV   82 (625)
T ss_pred             ccceEEEEECCCCccHHHHHHHHHhhhccccccccCCc-cccCCccCc-CcCceEEEecccccchhHH--HHHHHhhcCE
Confidence            45689999999999999999999999987655431111 111111112 2333556777654332222  3678899999


Q ss_pred             EEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc--HHHHHHHHHHh-CCCCcEEeeeccC-
Q 006490          501 TIFVYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA--VQDSARVTQEL-GIEPPIPVSMKSK-  575 (643)
Q Consensus       501 illv~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~--~~~~~~~~~~~-~~~~~~~vSa~~g-  575 (643)
                      +++||+++++.+.+.+. .|+..+++..... .++|||+|+||+|+......  +.....+..++ .+..+++|||++- 
T Consensus        83 i~lvyavd~~~T~D~ist~WLPlir~~~~~~-~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~  161 (625)
T KOG1707|consen   83 ICLVYAVDDESTVDRISTKWLPLIRQLFGDY-HETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLA  161 (625)
T ss_pred             EEEEEecCChHHhhhhhhhhhhhhhcccCCC-ccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhh
Confidence            99999999999988876 5999998776321 28999999999999875443  22233344443 3446899999999 


Q ss_pred             CHHHHHHHHHHHHhCCCCCCCCcccccchhhhhhhhchhh
Q 006490          576 DLNNVFSRIIWAAEHPHLNIPETETGRNRKRYRHLVNSSL  615 (643)
Q Consensus       576 ~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  615 (643)
                      ++.++|....+++.+|....-+.+......++..++.|.+
T Consensus       162 n~~e~fYyaqKaVihPt~PLyda~~qelkp~~v~al~RIF  201 (625)
T KOG1707|consen  162 NVSELFYYAQKAVIHPTSPLYDAEEQELKPRCVKALKRIF  201 (625)
T ss_pred             hhHhhhhhhhheeeccCccccccccccccHHHHHHHHHHH
Confidence            9999999999999888877666665544456666666555

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.57  E-value=1.1e-14  Score=164.87  Aligned_cols=230  Identities=13%  Similarity=0.042  Sum_probs=137.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCCCC-----CCCCC-----------CCCee--eCCcccCCceeEEEEeCCCCCcchh
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATESVPE-----KVPPV-----------HAPTR--LPPDFYPDRVPVTIIDTSSSLENKG   74 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~-----~~~~~-----------~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~   74 (643)
                      -+|+|+|++|+|||||+|+|+...-..     ...+.           .+.+.  ....+..++..+++|||||+.++..
T Consensus        11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~~~   90 (689)
T TIGR00484        11 RNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDFTV   90 (689)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcchhH
Confidence            369999999999999999997532111     11110           01111  2233445688999999999998887


Q ss_pred             hhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhccc--ce
Q 006490           75 KLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREI--ET  152 (643)
Q Consensus        75 ~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~--~~  152 (643)
                      ....+++.+|++|+|+|+++....+..  .++..++..  ++|+++|+||+|+....    ....++.+...++..  ..
T Consensus        91 ~~~~~l~~~D~~ilVvda~~g~~~~~~--~~~~~~~~~--~~p~ivviNK~D~~~~~----~~~~~~~i~~~l~~~~~~~  162 (689)
T TIGR00484        91 EVERSLRVLDGAVAVLDAVGGVQPQSE--TVWRQANRY--EVPRIAFVNKMDKTGAN----FLRVVNQIKQRLGANAVPI  162 (689)
T ss_pred             HHHHHHHHhCEEEEEEeCCCCCChhHH--HHHHHHHHc--CCCEEEEEECCCCCCCC----HHHHHHHHHHHhCCCceeE
Confidence            888999999999999999876555433  355566666  79999999999987642    334455666655532  13


Q ss_pred             EEEeCcccCCChhHHHHHHHHHH-hCCCCCCCcccccc--------chHHHHHHHHhhhhhcCCCC-----CCCCChHHH
Q 006490          153 CVECSATTMIQVPDVFYYAQKAV-LHPTAPLFDHDEQT--------LKPRCVRALKRIFIICDHDM-----DGALNDAEL  218 (643)
Q Consensus       153 ~~~~Sa~~~~gi~~l~~~i~~~~-~~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~-----~~~l~~~el  218 (643)
                      .+++|+.++  +..+++.+.... .++...........        ......+.++.+....|..+     ...+..+++
T Consensus       163 ~ipis~~~~--~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~~~~~~l  240 (689)
T TIGR00484       163 QLPIGAEDN--FIGVIDLVEMKAYFFNGDKGTKAIEKEIPSDLLEQAKELRENLVEAVAEFDEELMEKYLEGEELTIEEI  240 (689)
T ss_pred             EeccccCCC--ceEEEECccceEEecccCCCceeeeccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHHHH
Confidence            578888766  322222222111 11100000000000        11112222333332222222     123444554


Q ss_pred             HHHhhh----------hcCCCCCHHHHHHHHHHHHhhccCCcCC
Q 006490          219 NEFQVK----------CFNAPLQPAEIVGVKRVVQEKQHDGVND  252 (643)
Q Consensus       219 ~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (643)
                      ......          +++.++...+++.+++.+..+.|+|.+.
T Consensus       241 ~~~l~~~~~~~~~~PV~~gSa~~~~Gv~~LLd~I~~~lPsP~~~  284 (689)
T TIGR00484       241 KNAIRKGVLNCEFFPVLCGSAFKNKGVQLLLDAVVDYLPSPTDV  284 (689)
T ss_pred             HHHHHHHHhcCCEEEEEeccccCCccHHHHHHHHHHHCCCchhc
Confidence            322222          3677889999999999999999998754

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.57  E-value=3.5e-14  Score=137.83  Aligned_cols=152  Identities=21%  Similarity=0.173  Sum_probs=101.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCC------------CCCee------eC--------------------Cccc
Q 006490           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPV------------HAPTR------LP--------------------PDFY   55 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~------------~~~~~------~~--------------------~~~~   55 (643)
                      ||+++|+.++|||||+++|+.+.+.......            .+.+.      ..                    ..+.
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            6899999999999999999976553321100            00000      00                    0111


Q ss_pred             CCceeEEEEeCCCCCcchhhhHHhhc--cCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCcc
Q 006490           56 PDRVPVTIIDTSSSLENKGKLNEELK--RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA  133 (643)
Q Consensus        56 ~~~~~~~i~Dt~G~~~~~~~~~~~~~--~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~  133 (643)
                      ..+..++++||||.+.+.......+.  .+|++++|+|++....-.  ...++..+...  ++|+++|+||+|+.+... 
T Consensus        81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~--d~~~l~~l~~~--~ip~ivvvNK~D~~~~~~-  155 (224)
T cd04165          81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGM--TKEHLGLALAL--NIPVFVVVTKIDLAPANI-  155 (224)
T ss_pred             eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHH--HHHHHHHHHHc--CCCEEEEEECccccCHHH-
Confidence            23567999999999887666555554  689999999987654433  33577777776  799999999999865322 


Q ss_pred             chhhhhhhHHHHhh---------------------------cccceEEEeCcccCCChhHHHHHHH
Q 006490          134 TSLEEVMGPIMQQF---------------------------REIETCVECSATTMIQVPDVFYYAQ  172 (643)
Q Consensus       134 ~~~~~~~~~~~~~~---------------------------~~~~~~~~~Sa~~~~gi~~l~~~i~  172 (643)
                        .......+.+.+                           +...+++.+||.+|.|+++|...+.
T Consensus       156 --~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~  219 (224)
T cd04165         156 --LQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN  219 (224)
T ss_pred             --HHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence              222233333222                           2234789999999999999887653

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.57  E-value=1e-13  Score=129.04  Aligned_cols=151  Identities=19%  Similarity=0.146  Sum_probs=96.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchh----------hhhhhccHHh
Q 006490          425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG----------VKKILSNKEA  494 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~----------~~~~~~~~~~  494 (643)
                      +|+++|++|||||||+|.+++........++.........+...+   ...++|++|...          +...  ...+
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~--~~~~   75 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKL--IEEY   75 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHH--HHHH
Confidence            389999999999999999997655544444443334444444442   677899998322          2222  2223


Q ss_pred             h---ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHH---H-HhCCCCc
Q 006490          495 L---ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVT---Q-ELGIEPP  567 (643)
Q Consensus       495 ~---~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~---~-~~~~~~~  567 (643)
                      +   ..++++++++|.++..+... ......+...      +.|+++|+||+|+............+.   + .....++
T Consensus        76 ~~~~~~~~~~~~v~d~~~~~~~~~-~~~~~~l~~~------~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~  148 (170)
T cd01876          76 LENRENLKGVVLLIDSRHGPTEID-LEMLDWLEEL------GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPI  148 (170)
T ss_pred             HHhChhhhEEEEEEEcCcCCCHhH-HHHHHHHHHc------CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCce
Confidence            3   35688999999987633221 2222333333      689999999999965433322222222   2 2344468


Q ss_pred             EEeeeccC-CHHHHHHHHHHH
Q 006490          568 IPVSMKSK-DLNNVFSRIIWA  587 (643)
Q Consensus       568 ~~vSa~~g-~i~~l~~~l~~~  587 (643)
                      +++||+++ |+.++++.|.+.
T Consensus       149 ~~~Sa~~~~~~~~l~~~l~~~  169 (170)
T cd01876         149 ILFSSLKGQGIDELRALIEKW  169 (170)
T ss_pred             EEEecCCCCCHHHHHHHHHHh
Confidence            99999999 999999998864

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.57  E-value=6.3e-14  Score=154.66  Aligned_cols=159  Identities=15%  Similarity=0.189  Sum_probs=111.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCC-------CCCC------CcccceEE--EEEEc---CCCcEEEEEEecCCchhh
Q 006490          424 FRCLLFGPQNAGKSALLNSFLERPFSE-------NYAP------TTGEQYAV--NVVDQ---PGGNKKTLILQEIPEEGV  485 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~~~~~-------~~~~------t~~~~~~~--~~v~~---~g~~~~~~i~d~~g~~~~  485 (643)
                      -+|+|+|..++|||||+.+|+...-..       .+..      +.+.....  ..+.+   +|....+.+|||+|+..+
T Consensus         8 RNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF   87 (600)
T PRK05433          8 RNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDF   87 (600)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHH
Confidence            479999999999999999998632111       0000      11111111  11111   344677889999999888


Q ss_pred             hhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCC
Q 006490          486 KKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE  565 (643)
Q Consensus       486 ~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~  565 (643)
                      ...  +..++..||++|+|+|++++...+....|.... ..      ++|+++|+||+|+.... .....+++.+.+++.
T Consensus        88 ~~~--v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~-~~------~lpiIvViNKiDl~~a~-~~~v~~ei~~~lg~~  157 (600)
T PRK05433         88 SYE--VSRSLAACEGALLVVDASQGVEAQTLANVYLAL-EN------DLEIIPVLNKIDLPAAD-PERVKQEIEDVIGID  157 (600)
T ss_pred             HHH--HHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-HC------CCCEEEEEECCCCCccc-HHHHHHHHHHHhCCC
Confidence            765  678899999999999999986666555554332 22      78999999999986532 223345566666664


Q ss_pred             --CcEEeeeccC-CHHHHHHHHHHHHhCCC
Q 006490          566 --PPIPVSMKSK-DLNNVFSRIIWAAEHPH  592 (643)
Q Consensus       566 --~~~~vSa~~g-~i~~l~~~l~~~~~~~~  592 (643)
                        .++++||++| |+++++++|.+.+..|.
T Consensus       158 ~~~vi~iSAktG~GI~~Ll~~I~~~lp~P~  187 (600)
T PRK05433        158 ASDAVLVSAKTGIGIEEVLEAIVERIPPPK  187 (600)
T ss_pred             cceEEEEecCCCCCHHHHHHHHHHhCcccc
Confidence              4899999999 99999999999876553

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.57  E-value=4.1e-14  Score=119.18  Aligned_cols=160  Identities=9%  Similarity=0.071  Sum_probs=122.6

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v   89 (643)
                      .++++|+.+|-.++||||++..|..+..+...|++...   ...+...++.|++||.+|+......|..|+.+..++|||
T Consensus        15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTvGFn---vetVtykN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV   91 (180)
T KOG0071|consen   15 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFN---VETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV   91 (180)
T ss_pred             cccceEEEEecccCCceehhhHHhcCCCccccccccee---EEEEEeeeeEEeeeeccCchhhhHHHHhhccCCceEEEE
Confidence            35789999999999999999999988876666653222   224567789999999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCCCCCccc--hhhhhhhHHHHhhcccceEEEeCcccCCChhH
Q 006490           90 YACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNAT--SLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (643)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  166 (643)
                      +|..++...++...++...+... -.+.|+++.+||-|+.......  ...-+++.+..+.   -.+.++||.+|.|+.|
T Consensus        92 ~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~---W~vqp~~a~~gdgL~e  168 (180)
T KOG0071|consen   92 VDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRN---WYVQPSCALSGDGLKE  168 (180)
T ss_pred             EeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCc---cEeeccccccchhHHH
Confidence            99999999999888777777432 1378999999999998764330  1111112211111   1368899999999999


Q ss_pred             HHHHHHHHH
Q 006490          167 VFYYAQKAV  175 (643)
Q Consensus       167 l~~~i~~~~  175 (643)
                      -|.++...+
T Consensus       169 glswlsnn~  177 (180)
T KOG0071|consen  169 GLSWLSNNL  177 (180)
T ss_pred             HHHHHHhhc
Confidence            999887653

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=99.57  E-value=1.9e-16  Score=139.98  Aligned_cols=167  Identities=17%  Similarity=0.290  Sum_probs=141.9

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCC-cEEEEEEecCCchhhhhhhccHHhhccCC
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGG-NKKTLILQEIPEEGVKKILSNKEALASCD  499 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~-~~~~~i~d~~g~~~~~~~~~~~~~~~~ad  499 (643)
                      .+-+|+.|+|.-++||||++.+++...|...|..|++.++..++..++.. ..+..+||.+|++++..+  +.-+++.|+
T Consensus        23 ~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~m--trVyykea~  100 (229)
T KOG4423|consen   23 EHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNM--TRVYYKEAH  100 (229)
T ss_pred             hhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcce--EEEEecCCc
Confidence            45689999999999999999999999999888889998888877776632 234558999999999888  778999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCCCCcEEEEEeCCCCCCcccc--HHHHHHHHHHhCCCCcEEeeeccC-
Q 006490          500 VTIFVYDSSDEYSWKRTKELLVEVARLGE-DSGYGVPCLLIASKDDLKPYTMA--VQDSARVTQELGIEPPIPVSMKSK-  575 (643)
Q Consensus       500 ~illv~D~s~~~s~~~~~~~~~~i~~~~~-~~~~~~pvilv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~vSa~~g-  575 (643)
                      +.++|||++...+|+....|.+++..... +.+...|+|+.+||||..+....  .....++++..|+..++++|+|.+ 
T Consensus       101 ~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenk  180 (229)
T KOG4423|consen  101 GAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENK  180 (229)
T ss_pred             ceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeecccccc
Confidence            99999999999999999999998864432 22336789999999998764433  477889999999999999999999 


Q ss_pred             CHHHHHHHHHHHHh
Q 006490          576 DLNNVFSRIIWAAE  589 (643)
Q Consensus       576 ~i~~l~~~l~~~~~  589 (643)
                      +++++.+.+++...
T Consensus       181 ni~Ea~r~lVe~~l  194 (229)
T KOG4423|consen  181 NIPEAQRELVEKIL  194 (229)
T ss_pred             ChhHHHHHHHHHHH
Confidence            99999999999764

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.57  E-value=9.6e-14  Score=135.93  Aligned_cols=155  Identities=19%  Similarity=0.178  Sum_probs=98.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhh----hh-hccHHhhccC
Q 006490          425 RCLLFGPQNAGKSALLNSFLERPFSE-NYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK----KI-LSNKEALASC  498 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~~~~~-~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~----~~-~~~~~~~~~a  498 (643)
                      +|+++|.||||||||+|+|.+..... .++.|+.. ...-.+...  ...+.+||++|.....    .+ .+....++.+
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~-~~~g~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~a   78 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLT-CVPGVLEYK--GAKIQLLDLPGIIEGAADGKGRGRQVIAVARTA   78 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCCCcccc-ceEEEEEEC--CeEEEEEECCCcccccccchhHHHHHHHhhccC
Confidence            78999999999999999999876332 22223322 223333333  3467789999964322    11 1135678999


Q ss_pred             CEEEEEEeCCChhh-HHHHHHHHHH----------------------------------------HH-Hh----------
Q 006490          499 DVTIFVYDSSDEYS-WKRTKELLVE----------------------------------------VA-RL----------  526 (643)
Q Consensus       499 d~illv~D~s~~~s-~~~~~~~~~~----------------------------------------i~-~~----------  526 (643)
                      |++++|+|++++.. .+.+.+.+..                                        +. ++          
T Consensus        79 d~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~  158 (233)
T cd01896          79 DLILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIR  158 (233)
T ss_pred             CEEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEc
Confidence            99999999987642 2222222210                                        00 00          


Q ss_pred             -----------cCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC-CHHHHHHHHHHHHh
Q 006490          527 -----------GEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNVFSRIIWAAE  589 (643)
Q Consensus       527 -----------~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l~~~l~~~~~  589 (643)
                                 ......-+|+++|+||+|+...    ++...+++.   .+++++||++| |++++++.+.+.+.
T Consensus       159 ~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~----~~~~~~~~~---~~~~~~SA~~g~gi~~l~~~i~~~L~  226 (233)
T cd01896         159 EDITVDDLIDVIEGNRVYIPCLYVYNKIDLISI----EELDLLARQ---PNSVVISAEKGLNLDELKERIWDKLG  226 (233)
T ss_pred             cCCCHHHHHHHHhCCceEeeEEEEEECccCCCH----HHHHHHhcC---CCEEEEcCCCCCCHHHHHHHHHHHhC
Confidence                       0000114699999999999763    333344432   34899999999 99999999998653

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.56  E-value=5e-14  Score=135.23  Aligned_cols=121  Identities=22%  Similarity=0.310  Sum_probs=87.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccC-CEEEE
Q 006490          425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASC-DVTIF  503 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~a-d~ill  503 (643)
                      +|+++|++|||||||+++|.++.+..++.++ ...........++....+.+||++|+..+...  ...+++.+ +++|+
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~--~~~~~~~~~~~vV~   78 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDK--LLETLKNSAKGIVF   78 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHH--HHHHHhccCCEEEE
Confidence            5899999999999999999998876655333 22222222222224567889999999888765  67788888 99999


Q ss_pred             EEeCCCh-hhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCc
Q 006490          504 VYDSSDE-YSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPY  548 (643)
Q Consensus       504 v~D~s~~-~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~  548 (643)
                      |+|+++. .++.....++..+.........++|+++|+||+|+...
T Consensus        79 VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a  124 (203)
T cd04105          79 VVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA  124 (203)
T ss_pred             EEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence            9999987 66777777766554322111117999999999998753

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>PRK10218 GTP-binding protein; Provisional

Probab=99.56  E-value=6.2e-14  Score=153.80  Aligned_cols=159  Identities=15%  Similarity=0.160  Sum_probs=111.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcC--CCCCCCC------------CCCCCee--eCCcccCCceeEEEEeCCCCCcchhhh
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATE--SVPEKVP------------PVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKL   76 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~--~~~~~~~------------~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~   76 (643)
                      -+|+|+|+.++|||||+++|+..  .+.....            ...+.+.  ....+.++++.+++|||||+.++...+
T Consensus         6 RnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~v   85 (607)
T PRK10218          6 RNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGEV   85 (607)
T ss_pred             eEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHHH
Confidence            46999999999999999999973  2322111            0011111  223445678999999999999999999


Q ss_pred             HHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhh---cc----
Q 006490           77 NEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF---RE----  149 (643)
Q Consensus        77 ~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~---~~----  149 (643)
                      ..+++.+|++|+|+|+++....+.  ..++..+...  ++|+++|+||+|+...+..    ..+.++...+   +.    
T Consensus        86 ~~~l~~aDg~ILVVDa~~G~~~qt--~~~l~~a~~~--gip~IVviNKiD~~~a~~~----~vl~ei~~l~~~l~~~~~~  157 (607)
T PRK10218         86 ERVMSMVDSVLLVVDAFDGPMPQT--RFVTKKAFAY--GLKPIVVINKVDRPGARPD----WVVDQVFDLFVNLDATDEQ  157 (607)
T ss_pred             HHHHHhCCEEEEEEecccCccHHH--HHHHHHHHHc--CCCEEEEEECcCCCCCchh----HHHHHHHHHHhccCccccc
Confidence            999999999999999887543332  2355555555  7899999999998754322    2222232322   11    


Q ss_pred             -cceEEEeCcccCC----------ChhHHHHHHHHHHhCCC
Q 006490          150 -IETCVECSATTMI----------QVPDVFYYAQKAVLHPT  179 (643)
Q Consensus       150 -~~~~~~~Sa~~~~----------gi~~l~~~i~~~~~~~~  179 (643)
                       -.+++.+||.+|.          |+..|++.+...+..+.
T Consensus       158 ~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P~  198 (607)
T PRK10218        158 LDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPD  198 (607)
T ss_pred             cCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCCC
Confidence             1358999999998          58899999888877654

>PRK00007 elongation factor G; Reviewed

Probab=99.55  E-value=1.2e-14  Score=164.20  Aligned_cols=232  Identities=13%  Similarity=0.075  Sum_probs=141.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCCCCC----CCC------------CCCCee--eCCcccCCceeEEEEeCCCCCcchh
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATESVPEK----VPP------------VHAPTR--LPPDFYPDRVPVTIIDTSSSLENKG   74 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~----~~~------------~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~   74 (643)
                      .+|+|+|++|+|||||+++|+...-...    ...            ..+.+.  ....+.+.+..++++||||..++..
T Consensus        11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f~~   90 (693)
T PRK00007         11 RNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDFTI   90 (693)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHHHH
Confidence            4699999999999999999974221000    000            001111  2223445688999999999988777


Q ss_pred             hhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhccc--ce
Q 006490           75 KLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREI--ET  152 (643)
Q Consensus        75 ~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~--~~  152 (643)
                      ....+++.+|++|+|+|+......+.  ...+..+.+.  ++|+|+++||+|+...    .....++.+...++..  ..
T Consensus        91 ev~~al~~~D~~vlVvda~~g~~~qt--~~~~~~~~~~--~~p~iv~vNK~D~~~~----~~~~~~~~i~~~l~~~~~~~  162 (693)
T PRK00007         91 EVERSLRVLDGAVAVFDAVGGVEPQS--ETVWRQADKY--KVPRIAFVNKMDRTGA----DFYRVVEQIKDRLGANPVPI  162 (693)
T ss_pred             HHHHHHHHcCEEEEEEECCCCcchhh--HHHHHHHHHc--CCCEEEEEECCCCCCC----CHHHHHHHHHHHhCCCeeeE
Confidence            77789999999999999876644443  3466667766  7899999999998864    2445566777777642  24


Q ss_pred             EEEeCcccC-CChhHHHHHHHHHHh-CCCCCCCcc------ccccchHHHHHHHHhhhhhcCCCC-----CCCCChHHHH
Q 006490          153 CVECSATTM-IQVPDVFYYAQKAVL-HPTAPLFDH------DEQTLKPRCVRALKRIFIICDHDM-----DGALNDAELN  219 (643)
Q Consensus       153 ~~~~Sa~~~-~gi~~l~~~i~~~~~-~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~-----~~~l~~~el~  219 (643)
                      .+++|+..+ .|+-+++........ ......+..      ..........+.++.+....|..+     +..+..+++.
T Consensus       163 ~ipisa~~~f~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~l~~~~l~  242 (693)
T PRK00007        163 QLPIGAEDDFKGVVDLVKMKAIIWNEADLGATFEYEEIPADLKDKAEEYREKLIEAAAEADEELMEKYLEGEELTEEEIK  242 (693)
T ss_pred             EecCccCCcceEEEEcceeeeeecccCCCCCcceEccCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHhCcCCCCHHHHH
Confidence            578999877 555555532221110 000000000      000011112222333322222222     2344555554


Q ss_pred             HHhhh----------hcCCCCCHHHHHHHHHHHHhhccCCcCC
Q 006490          220 EFQVK----------CFNAPLQPAEIVGVKRVVQEKQHDGVND  252 (643)
Q Consensus       220 ~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (643)
                      ....+          +++.++...+++.+++.+..++|+|.+.
T Consensus       243 ~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~  285 (693)
T PRK00007        243 AALRKATIANEIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDV  285 (693)
T ss_pred             HHHHHHHhcCcEEEEEecccccCcCHHHHHHHHHHHCCChhhc
Confidence            33221          4778899999999999999999998754

>cd04167 Snu114p Snu114p subfamily

Probab=99.55  E-value=4.3e-14  Score=137.17  Aligned_cols=111  Identities=18%  Similarity=0.170  Sum_probs=79.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCC-----------CCCCC-CeeeCCcc------------cCCceeEEEEeCCCC
Q 006490           14 RVVVVGDRGTGKSSLIAAAATESVPEKV-----------PPVHA-PTRLPPDF------------YPDRVPVTIIDTSSS   69 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~~~~~~~~-----------~~~~~-~~~~~~~~------------~~~~~~~~i~Dt~G~   69 (643)
                      +|+|+|++|+|||||+++|+........           ..... .......+            ....+.+.+|||||+
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            5999999999999999999976543221           00000 00000111            234578999999999


Q ss_pred             CcchhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCC
Q 006490           70 LENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLR  128 (643)
Q Consensus        70 ~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~  128 (643)
                      .++......++..+|++|+|+|++...+....  .++..+...  ++|+++|+||+|+.
T Consensus        82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~--~~~~~~~~~--~~p~iiviNK~D~~  136 (213)
T cd04167          82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNTE--RLIRHAILE--GLPIVLVINKIDRL  136 (213)
T ss_pred             cchHHHHHHHHHhCCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCCEEEEEECcccC
Confidence            98888888999999999999999877665432  355555544  69999999999975

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.55  E-value=5.5e-14  Score=154.49  Aligned_cols=161  Identities=16%  Similarity=0.165  Sum_probs=111.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC--CCCCCCC------------CCCCee--eCCcccCCceeEEEEeCCCCCcchhhhH
Q 006490           14 RVVVVGDRGTGKSSLIAAAATES--VPEKVPP------------VHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLN   77 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~~~--~~~~~~~------------~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~   77 (643)
                      +|+|+|+.++|||||+++|+...  +......            ..+.+.  ....+.++++.+++|||||+.+|.....
T Consensus         3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~   82 (594)
T TIGR01394         3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE   82 (594)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence            59999999999999999998642  2211100            000111  2233456789999999999999988889


Q ss_pred             HhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcc-----cce
Q 006490           78 EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE-----IET  152 (643)
Q Consensus        78 ~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~-----~~~  152 (643)
                      .+++.+|++|+|+|+......+  ...|+..+...  ++|+|+|+||+|+...+.. .....+..+...++.     ..+
T Consensus        83 ~~l~~aD~alLVVDa~~G~~~q--T~~~l~~a~~~--~ip~IVviNKiD~~~a~~~-~v~~ei~~l~~~~g~~~e~l~~p  157 (594)
T TIGR01394        83 RVLGMVDGVLLLVDASEGPMPQ--TRFVLKKALEL--GLKPIVVINKIDRPSARPD-EVVDEVFDLFAELGADDEQLDFP  157 (594)
T ss_pred             HHHHhCCEEEEEEeCCCCCcHH--HHHHHHHHHHC--CCCEEEEEECCCCCCcCHH-HHHHHHHHHHHhhccccccccCc
Confidence            9999999999999987643222  23477777666  7899999999998654321 111222222222211     136


Q ss_pred             EEEeCcccCC----------ChhHHHHHHHHHHhCCC
Q 006490          153 CVECSATTMI----------QVPDVFYYAQKAVLHPT  179 (643)
Q Consensus       153 ~~~~Sa~~~~----------gi~~l~~~i~~~~~~~~  179 (643)
                      ++++||++|.          |+..+|+.+.+.+..+.
T Consensus       158 vl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~  194 (594)
T TIGR01394       158 IVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPK  194 (594)
T ss_pred             EEechhhcCcccccCcccccCHHHHHHHHHHhCCCCC
Confidence            8999999995          89999999999887654

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.55  E-value=1.3e-13  Score=152.32  Aligned_cols=155  Identities=15%  Similarity=0.115  Sum_probs=104.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490          425 RCLLFGPQNAGKSALLNSFLERPFS---ENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~~~~---~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i  501 (643)
                      -|+++|.+++|||||+++|++....   ......++.+.....+..+ ....+.+||++|++.+...  +...+..+|++
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~-~g~~i~~IDtPGhe~fi~~--m~~g~~~~D~~   78 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQP-DGRVLGFIDVPGHEKFLSN--MLAGVGGIDHA   78 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecC-CCcEEEEEECCCHHHHHHH--HHHHhhcCCEE
Confidence            4899999999999999999975321   1221122222223334444 2345678999999887554  56778999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCc-EEEEEeCCCCCCcccc---HHHHHHHHHHhCC--CCcEEeeeccC
Q 006490          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVP-CLLIASKDDLKPYTMA---VQDSARVTQELGI--EPPIPVSMKSK  575 (643)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~p-vilv~NK~Dl~~~~~~---~~~~~~~~~~~~~--~~~~~vSa~~g  575 (643)
                      ++|+|++++.. .+..+.+..+...      ++| +++|+||+|+.++...   .++...+....++  .+++++||++|
T Consensus        79 lLVVda~eg~~-~qT~ehl~il~~l------gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG  151 (614)
T PRK10512         79 LLVVACDDGVM-AQTREHLAILQLT------GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEG  151 (614)
T ss_pred             EEEEECCCCCc-HHHHHHHHHHHHc------CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCC
Confidence            99999998533 2223333333332      566 5799999999764332   2344444455554  36999999999


Q ss_pred             -CHHHHHHHHHHHHh
Q 006490          576 -DLNNVFSRIIWAAE  589 (643)
Q Consensus       576 -~i~~l~~~l~~~~~  589 (643)
                       |++++++.|.+...
T Consensus       152 ~gI~~L~~~L~~~~~  166 (614)
T PRK10512        152 RGIDALREHLLQLPE  166 (614)
T ss_pred             CCCHHHHHHHHHhhc
Confidence             99999999987654

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.54  E-value=9.8e-14  Score=132.76  Aligned_cols=160  Identities=16%  Similarity=0.145  Sum_probs=100.1

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCCCCC-CC--CCCCCeeeCCccc-CCceeEEEEeCCCCCcchhhhHH-----hhcc
Q 006490           12 GVRVVVVGDRGTGKSSLIAAAATESVPEK-VP--PVHAPTRLPPDFY-PDRVPVTIIDTSSSLENKGKLNE-----ELKR   82 (643)
Q Consensus        12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~~-~~--~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~-----~~~~   82 (643)
                      .+||+|+|++|||||||+|+|++...... ..  +....+.....+. .....+.+|||||+.........     .+.+
T Consensus         1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~   80 (197)
T cd04104           1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE   80 (197)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence            37899999999999999999998664322 11  1111111111111 12346899999998654332322     3677


Q ss_pred             CCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccc------hhhhhhhHHHH----hhc----
Q 006490           83 ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNAT------SLEEVMGPIMQ----QFR----  148 (643)
Q Consensus        83 ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~------~~~~~~~~~~~----~~~----  148 (643)
                      +|++++|.|  ++  +......|++.++..  ++|+++|+||+|+.......      ..++.++.+.+    .++    
T Consensus        81 ~d~~l~v~~--~~--~~~~d~~~~~~l~~~--~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~  154 (197)
T cd04104          81 YDFFIIISS--TR--FSSNDVKLAKAIQCM--GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAGV  154 (197)
T ss_pred             cCEEEEEeC--CC--CCHHHHHHHHHHHHh--CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcCC
Confidence            899999854  32  344444688888877  78999999999985321100      01122222222    221    


Q ss_pred             ccceEEEeCcc--cCCChhHHHHHHHHHHhC
Q 006490          149 EIETCVECSAT--TMIQVPDVFYYAQKAVLH  177 (643)
Q Consensus       149 ~~~~~~~~Sa~--~~~gi~~l~~~i~~~~~~  177 (643)
                      ...+++.+|+.  .+.|+..+.+.++..+..
T Consensus       155 ~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~  185 (197)
T cd04104         155 SEPPVFLVSNFDPSDYDFPKLRETLLKDLPA  185 (197)
T ss_pred             CCCCEEEEeCCChhhcChHHHHHHHHHHhhH
Confidence            22368999998  578999999988887653

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.54  E-value=3.4e-14  Score=152.38  Aligned_cols=160  Identities=18%  Similarity=0.117  Sum_probs=103.0

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCC--CCCC----------CCC-----------------CCCCee--eCCcccCC
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATES--VPEK----------VPP-----------------VHAPTR--LPPDFYPD   57 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~--~~~~----------~~~-----------------~~~~~~--~~~~~~~~   57 (643)
                      .++.++|+++|+.++|||||+++|+...  +...          ..+                 ..+.+.  ....+..+
T Consensus         4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~   83 (426)
T TIGR00483         4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD   83 (426)
T ss_pred             CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence            5677999999999999999999998632  1100          000                 001111  22334566


Q ss_pred             ceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECCCcccHHHHHH-HHHHHHHhcCCCCcEEEEEecccCCCCCcc--c
Q 006490           58 RVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSS-YWLPELRRLEIKVPIIVAGCKLDLRGDHNA--T  134 (643)
Q Consensus        58 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~-~~~~~l~~~~~~~pvilv~NK~D~~~~~~~--~  134 (643)
                      ++.+.||||||++++.......+..+|++|+|+|+++..+...... .++...+.. ...|+|+|+||+|+......  .
T Consensus        84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~-~~~~iIVviNK~Dl~~~~~~~~~  162 (426)
T TIGR00483        84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL-GINQLIVAINKMDSVNYDEEEFE  162 (426)
T ss_pred             CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc-CCCeEEEEEEChhccCccHHHHH
Confidence            7899999999998876666677889999999999988743311111 122233333 23579999999999742221  0


Q ss_pred             hhhhhhhHHHHhhcc---cceEEEeCcccCCChhHHHH
Q 006490          135 SLEEVMGPIMQQFRE---IETCVECSATTMIQVPDVFY  169 (643)
Q Consensus       135 ~~~~~~~~~~~~~~~---~~~~~~~Sa~~~~gi~~l~~  169 (643)
                      .....+..+.+.++.   ..+++++||++|.|+.+++.
T Consensus       163 ~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~  200 (426)
T TIGR00483       163 AIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSE  200 (426)
T ss_pred             HHHHHHHHHHHHcCCCcccceEEEeecccccccccccc
Confidence            112334445554441   23689999999999987553

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.54  E-value=1.2e-13  Score=134.01  Aligned_cols=151  Identities=21%  Similarity=0.258  Sum_probs=100.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCC----------------Ccc-----cceE-----------------EEEEE
Q 006490          425 RCLLFGPQNAGKSALLNSFLERPFSENYAP----------------TTG-----EQYA-----------------VNVVD  466 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~~~~~~~~~----------------t~~-----~~~~-----------------~~~v~  466 (643)
                      ||+++|..++|||||+++|..+.+......                |..     .++.                 ...+.
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            589999999999999999997655321110                000     0000                 01111


Q ss_pred             cCCCcEEEEEEecCCchhhhhhhccHHhhc--cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCC
Q 006490          467 QPGGNKKTLILQEIPEEGVKKILSNKEALA--SCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDD  544 (643)
Q Consensus       467 ~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~--~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~D  544 (643)
                      .  ....+.++|++|++.+...  +...+.  .+|++++|+|+.++.. .....++..+...      ++|+++|+||+|
T Consensus        81 ~--~~~~i~liDtpG~~~~~~~--~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~~------~ip~ivvvNK~D  149 (224)
T cd04165          81 K--SSKLVTFIDLAGHERYLKT--TLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALAL------NIPVFVVVTKID  149 (224)
T ss_pred             e--CCcEEEEEECCCcHHHHHH--HHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHHc------CCCEEEEEECcc
Confidence            1  2345678999999877553  344443  7999999999988754 4445555555554      899999999999


Q ss_pred             CCCccccHHHHHHHHHHhC----------------------------CCCcEEeeeccC-CHHHHHHHHHH
Q 006490          545 LKPYTMAVQDSARVTQELG----------------------------IEPPIPVSMKSK-DLNNVFSRIIW  586 (643)
Q Consensus       545 l~~~~~~~~~~~~~~~~~~----------------------------~~~~~~vSa~~g-~i~~l~~~l~~  586 (643)
                      +.+.....+...++.+.+.                            ..|++.+||.+| |++++...|..
T Consensus       150 ~~~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~  220 (224)
T cd04165         150 LAPANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL  220 (224)
T ss_pred             ccCHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence            8765444444444444433                            237899999999 99999887754

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.54  E-value=9e-14  Score=134.12  Aligned_cols=160  Identities=21%  Similarity=0.206  Sum_probs=111.0

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhh-----hccHHhhcc
Q 006490          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKI-----LSNKEALAS  497 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~-----~~~~~~~~~  497 (643)
                      ...|-+||-||+|||||+|+|...+-.....+-|+..-.+-++..+ ....+.+-|.+|.-+-..+     .+-.+.+..
T Consensus       196 iadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yd-df~q~tVADiPGiI~GAh~nkGlG~~FLrHiER  274 (366)
T KOG1489|consen  196 IADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYD-DFSQITVADIPGIIEGAHMNKGLGYKFLRHIER  274 (366)
T ss_pred             ecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeecc-ccceeEeccCccccccccccCcccHHHHHHHHh
Confidence            4568899999999999999999876554444422221122223333 3333555666662111111     113567899


Q ss_pred             CCEEEEEEeCCCh---hhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeecc
Q 006490          498 CDVTIFVYDSSDE---YSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKS  574 (643)
Q Consensus       498 ad~illv~D~s~~---~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~  574 (643)
                      |+.+++|+|++.+   .-++++..+..++..+..... ++|.++|+||+|+.+.+  ...+.++++.+.-+.++++||++
T Consensus       275 ~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~-~rp~liVaNKiD~~eae--~~~l~~L~~~lq~~~V~pvsA~~  351 (366)
T KOG1489|consen  275 CKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLA-DRPALIVANKIDLPEAE--KNLLSSLAKRLQNPHVVPVSAKS  351 (366)
T ss_pred             hceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhc-cCceEEEEeccCchhHH--HHHHHHHHHHcCCCcEEEeeecc
Confidence            9999999999988   778888777777766554322 78999999999996422  23357888888877799999999


Q ss_pred             C-CHHHHHHHHHH
Q 006490          575 K-DLNNVFSRIIW  586 (643)
Q Consensus       575 g-~i~~l~~~l~~  586 (643)
                      + |+.++++.+.+
T Consensus       352 ~egl~~ll~~lr~  364 (366)
T KOG1489|consen  352 GEGLEELLNGLRE  364 (366)
T ss_pred             ccchHHHHHHHhh
Confidence            9 99999888754

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.53  E-value=8.5e-14  Score=153.84  Aligned_cols=156  Identities=17%  Similarity=0.169  Sum_probs=102.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCC---CCCCC-CCCCCCee-eC-Ccc-cCCceeEEEEeCCCCCcchhhhHHhhccCCE
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATES---VPEKV-PPVHAPTR-LP-PDF-YPDRVPVTIIDTSSSLENKGKLNEELKRADA   85 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~~---~~~~~-~~~~~~~~-~~-~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~   85 (643)
                      +-|+++|+.++|||||+++|++..   +.+.. .+   .|. .. ..+ ..++..+.+|||||++.+...+...+..+|+
T Consensus         1 ~ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rG---iTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~   77 (614)
T PRK10512          1 MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRG---MTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDH   77 (614)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCccchhcccCC---ceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCE
Confidence            358999999999999999999743   22221 11   111 11 111 1245678999999999887777788999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHhcCCCCc-EEEEEecccCCCCCccchhhhhhhHHHHhhc-ccceEEEeCcccCCC
Q 006490           86 VVLTYACNQQSTLSRLSSYWLPELRRLEIKVP-IIVAGCKLDLRGDHNATSLEEVMGPIMQQFR-EIETCVECSATTMIQ  163 (643)
Q Consensus        86 il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p-vilv~NK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~g  163 (643)
                      +++|+|++.....+..  +.+..++..  ++| +|+|+||+|+.+........+.+..+....+ ...+++++||++|.|
T Consensus        78 ~lLVVda~eg~~~qT~--ehl~il~~l--gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~g  153 (614)
T PRK10512         78 ALLVVACDDGVMAQTR--EHLAILQLT--GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRG  153 (614)
T ss_pred             EEEEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCC
Confidence            9999998874332222  234445554  556 5799999999753221011222333333322 124689999999999


Q ss_pred             hhHHHHHHHHHH
Q 006490          164 VPDVFYYAQKAV  175 (643)
Q Consensus       164 i~~l~~~i~~~~  175 (643)
                      +++|++.+....
T Consensus       154 I~~L~~~L~~~~  165 (614)
T PRK10512        154 IDALREHLLQLP  165 (614)
T ss_pred             CHHHHHHHHHhh
Confidence            999999887643

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.53  E-value=5.8e-14  Score=149.11  Aligned_cols=165  Identities=16%  Similarity=0.127  Sum_probs=103.3

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCC---CCC-CCCC---C----------------CeeeCCcccC------Ccee
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATESVP---EKV-PPVH---A----------------PTRLPPDFYP------DRVP   60 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~---~~~-~~~~---~----------------~~~~~~~~~~------~~~~   60 (643)
                      +++++|+++|.+++|||||+++|.+....   +.. .+..   +                ..+.....+.      .+..
T Consensus         2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (406)
T TIGR03680         2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR   81 (406)
T ss_pred             CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence            56789999999999999999999764211   000 0000   0                0000000011      2467


Q ss_pred             EEEEeCCCCCcchhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhh
Q 006490           61 VTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVM  140 (643)
Q Consensus        61 ~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~  140 (643)
                      +++|||||++++...+...+..+|++++|+|+++........ +.+..+...+ ..|+++|+||+|+..........+.+
T Consensus        82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~-e~l~~l~~~g-i~~iIVvvNK~Dl~~~~~~~~~~~~i  159 (406)
T TIGR03680        82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTK-EHLMALEIIG-IKNIVIVQNKIDLVSKEKALENYEEI  159 (406)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchH-HHHHHHHHcC-CCeEEEEEEccccCCHHHHHHHHHHH
Confidence            999999999988877778888899999999998643111111 1233344432 35799999999987532210011222


Q ss_pred             hHHHHhh-cccceEEEeCcccCCChhHHHHHHHHHHh
Q 006490          141 GPIMQQF-REIETCVECSATTMIQVPDVFYYAQKAVL  176 (643)
Q Consensus       141 ~~~~~~~-~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~  176 (643)
                      ..+.... ....+++++||++|.|++++++++...+.
T Consensus       160 ~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~  196 (406)
T TIGR03680       160 KEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP  196 (406)
T ss_pred             HhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence            2222221 11236899999999999999999987654

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>cd01858 NGP_1 NGP-1

Probab=99.53  E-value=3.5e-13  Score=124.06  Aligned_cols=87  Identities=9%  Similarity=0.024  Sum_probs=56.4

Q ss_pred             HhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeC
Q 006490           78 EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECS  157 (643)
Q Consensus        78 ~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  157 (643)
                      ..++++|++++|+|+.++.....  ..+...+.....++|+++|.||+|+.....   ....+..+.+.+. . ..+.+|
T Consensus         4 ~~l~~aD~il~VvD~~~p~~~~~--~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~---~~~~~~~~~~~~~-~-~~~~iS   76 (157)
T cd01858           4 KVIDSSDVVIQVLDARDPMGTRC--KHVEEYLKKEKPHKHLIFVLNKCDLVPTWV---TARWVKILSKEYP-T-IAFHAS   76 (157)
T ss_pred             HhhhhCCEEEEEEECCCCccccC--HHHHHHHHhccCCCCEEEEEEchhcCCHHH---HHHHHHHHhcCCc-E-EEEEee
Confidence            56789999999999988743221  134555554434699999999999964211   1122222322222 1 247899


Q ss_pred             cccCCChhHHHHHH
Q 006490          158 ATTMIQVPDVFYYA  171 (643)
Q Consensus       158 a~~~~gi~~l~~~i  171 (643)
                      |+++.|++++++.+
T Consensus        77 a~~~~~~~~L~~~l   90 (157)
T cd01858          77 INNPFGKGSLIQLL   90 (157)
T ss_pred             ccccccHHHHHHHH
Confidence            99999999887754

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.53  E-value=2.3e-13  Score=114.73  Aligned_cols=155  Identities=21%  Similarity=0.243  Sum_probs=118.2

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i  501 (643)
                      ..++|+.+|-.++||||++..|.-+... +..||++  +.+..+..  ...++.+||..|++.+..+  +.+++.+..++
T Consensus        16 KE~~ilmlGLd~aGKTtiLyKLkl~~~~-~~ipTvG--FnvetVty--kN~kfNvwdvGGqd~iRpl--WrhYy~gtqgl   88 (180)
T KOG0071|consen   16 KEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVG--FNVETVTY--KNVKFNVWDVGGQDKIRPL--WRHYYTGTQGL   88 (180)
T ss_pred             ccceEEEEecccCCceehhhHHhcCCCc-ccccccc--eeEEEEEe--eeeEEeeeeccCchhhhHH--HHhhccCCceE
Confidence            3689999999999999999999876533 2224544  55666554  4678889999999999998  89999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCC-------CcEEeeecc
Q 006490          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE-------PPIPVSMKS  574 (643)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-------~~~~vSa~~  574 (643)
                      |||+|+.+.+..++.++.+..+.......  ..|+++.+||-|+.....    ..++...+++.       .+.++||.+
T Consensus        89 IFV~Dsa~~dr~eeAr~ELh~ii~~~em~--~~~~LvlANkQDlp~A~~----pqei~d~leLe~~r~~~W~vqp~~a~~  162 (180)
T KOG0071|consen   89 IFVVDSADRDRIEEARNELHRIINDREMR--DAIILILANKQDLPDAMK----PQEIQDKLELERIRDRNWYVQPSCALS  162 (180)
T ss_pred             EEEEeccchhhHHHHHHHHHHHhCCHhhh--cceEEEEecCcccccccC----HHHHHHHhccccccCCccEeecccccc
Confidence            99999999877777777666665544444  789999999999987432    22233333222       267899999


Q ss_pred             C-CHHHHHHHHHHHHh
Q 006490          575 K-DLNNVFSRIIWAAE  589 (643)
Q Consensus       575 g-~i~~l~~~l~~~~~  589 (643)
                      | |+.+=|.+|.....
T Consensus       163 gdgL~eglswlsnn~~  178 (180)
T KOG0071|consen  163 GDGLKEGLSWLSNNLK  178 (180)
T ss_pred             chhHHHHHHHHHhhcc
Confidence            9 99999999887653

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.52  E-value=1.7e-13  Score=150.56  Aligned_cols=155  Identities=25%  Similarity=0.277  Sum_probs=100.2

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCC----CCeeeCCccc----CCc-----e-----eEEEEeCCCCCcch
Q 006490           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVH----APTRLPPDFY----PDR-----V-----PVTIIDTSSSLENK   73 (643)
Q Consensus        12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~----~~~~~~~~~~----~~~-----~-----~~~i~Dt~G~~~~~   73 (643)
                      ...|+|+|++|+|||||+++|.+..+....++..    +.+..+....    ...     .     .+.+|||||++.|.
T Consensus         6 ~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f~   85 (586)
T PRK04004          6 QPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAFT   85 (586)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHHH
Confidence            3469999999999999999998776554444311    1111111100    000     1     27899999999998


Q ss_pred             hhhHHhhccCCEEEEEEECCCc---ccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCcc-----------------
Q 006490           74 GKLNEELKRADAVVLTYACNQQ---STLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA-----------------  133 (643)
Q Consensus        74 ~~~~~~~~~ad~il~v~d~~~~---~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~-----------------  133 (643)
                      .++...+..+|++++|+|+++.   .+++.     +..++..  ++|+++|+||+|+......                 
T Consensus        86 ~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~-----i~~~~~~--~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~v  158 (586)
T PRK04004         86 NLRKRGGALADIAILVVDINEGFQPQTIEA-----INILKRR--KTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQRV  158 (586)
T ss_pred             HHHHHhHhhCCEEEEEEECCCCCCHhHHHH-----HHHHHHc--CCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHHH
Confidence            8888888999999999999873   33333     3344444  7999999999998521000                 


Q ss_pred             -chhhhhhhHH---HH-------------hhcccceEEEeCcccCCChhHHHHHHHH
Q 006490          134 -TSLEEVMGPI---MQ-------------QFREIETCVECSATTMIQVPDVFYYAQK  173 (643)
Q Consensus       134 -~~~~~~~~~~---~~-------------~~~~~~~~~~~Sa~~~~gi~~l~~~i~~  173 (643)
                       ...++....+   ..             .++...+++++||.+|.|++++++.+..
T Consensus       159 ~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~  215 (586)
T PRK04004        159 QQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG  215 (586)
T ss_pred             HHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence             0000001111   11             1222346899999999999999987653

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.52  E-value=4.4e-14  Score=137.50  Aligned_cols=149  Identities=17%  Similarity=0.082  Sum_probs=93.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCC--------------------------CCC---CCCCee--eCCcccCCceeEE
Q 006490           14 RVVVVGDRGTGKSSLIAAAATESVPEK--------------------------VPP---VHAPTR--LPPDFYPDRVPVT   62 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~~~~~~~--------------------------~~~---~~~~~~--~~~~~~~~~~~~~   62 (643)
                      +|+|+|++++|||||+.+|+...-...                          ...   ..+.+.  ....+...+..+.
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~   80 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT   80 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence            489999999999999999974321100                          000   001111  2233446788999


Q ss_pred             EEeCCCCCcchhhhHHhhccCCEEEEEEECCCcc-----cHH-HHHHHHHHHHHhcCCCCcEEEEEecccCCCC--Cccc
Q 006490           63 IIDTSSSLENKGKLNEELKRADAVVLTYACNQQS-----TLS-RLSSYWLPELRRLEIKVPIIVAGCKLDLRGD--HNAT  134 (643)
Q Consensus        63 i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~~~-----s~~-~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~--~~~~  134 (643)
                      +|||||+..+...+...+..+|++|+|+|+++..     ... ... ..+....... .+|+++|+||+|+...  ... 
T Consensus        81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~iiivvNK~Dl~~~~~~~~-  157 (219)
T cd01883          81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTR-EHALLARTLG-VKQLIVAVNKMDDVTVNWSEE-  157 (219)
T ss_pred             EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchH-HHHHHHHHcC-CCeEEEEEEccccccccccHH-
Confidence            9999998777666667788899999999998742     111 111 1223333332 3689999999999742  111 


Q ss_pred             hhhhhhhH---HHHhhcc---cceEEEeCcccCCChh
Q 006490          135 SLEEVMGP---IMQQFRE---IETCVECSATTMIQVP  165 (643)
Q Consensus       135 ~~~~~~~~---~~~~~~~---~~~~~~~Sa~~~~gi~  165 (643)
                      ..+.....   +...++.   -.++++|||++|.|++
T Consensus       158 ~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         158 RYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             HHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence            12222222   2333321   1369999999999997

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.52  E-value=1.1e-13  Score=148.65  Aligned_cols=151  Identities=17%  Similarity=0.171  Sum_probs=98.8

Q ss_pred             cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCC-------------------------------CCCcccceEEEEEEcC
Q 006490          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENY-------------------------------APTTGEQYAVNVVDQP  468 (643)
Q Consensus       420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~-------------------------------~~t~~~~~~~~~v~~~  468 (643)
                      ++..++|+++|.+|+|||||+++|+........                               .+.++.+.....+.. 
T Consensus         3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~-   81 (425)
T PRK12317          3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFET-   81 (425)
T ss_pred             CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEec-
Confidence            345689999999999999999999954332211                               111222233333443 


Q ss_pred             CCcEEEEEEecCCchhhhhhhccHHhhccCCEEEEEEeCCC--hhhHHHHHHHHHHHHHhcCCCCCC-CcEEEEEeCCCC
Q 006490          469 GGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSD--EYSWKRTKELLVEVARLGEDSGYG-VPCLLIASKDDL  545 (643)
Q Consensus       469 g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv~D~s~--~~s~~~~~~~~~~i~~~~~~~~~~-~pvilv~NK~Dl  545 (643)
                       ....+.+|||+|++.+...  ....+..+|++++|+|+++  +.. ......+..+...      + .|+++|+||+|+
T Consensus        82 -~~~~i~liDtpG~~~~~~~--~~~~~~~aD~~ilVvDa~~~~~~~-~~~~~~~~~~~~~------~~~~iivviNK~Dl  151 (425)
T PRK12317         82 -DKYYFTIVDCPGHRDFVKN--MITGASQADAAVLVVAADDAGGVM-PQTREHVFLARTL------GINQLIVAINKMDA  151 (425)
T ss_pred             -CCeEEEEEECCCcccchhh--HhhchhcCCEEEEEEEcccCCCCC-cchHHHHHHHHHc------CCCeEEEEEEcccc
Confidence             3467788999998776543  3456789999999999997  322 1122222222222      4 469999999999


Q ss_pred             CCccc-----cHHHHHHHHHHhCC----CCcEEeeeccC-CHHHHH
Q 006490          546 KPYTM-----AVQDSARVTQELGI----EPPIPVSMKSK-DLNNVF  581 (643)
Q Consensus       546 ~~~~~-----~~~~~~~~~~~~~~----~~~~~vSa~~g-~i~~l~  581 (643)
                      .....     ..+++..+.+..++    .+++++||++| |++++.
T Consensus       152 ~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~  197 (425)
T PRK12317        152 VNYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS  197 (425)
T ss_pred             ccccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence            75211     13455566666665    25899999999 998643

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.52  E-value=1.2e-13  Score=146.59  Aligned_cols=164  Identities=16%  Similarity=0.148  Sum_probs=103.1

Q ss_pred             CCCCCccEEEEEcCCCCCHHHHHHHHhcCCC---CCC-CCCCCCCee-eC---Cc------------c------c-----
Q 006490            7 SSSRTGVRVVVVGDRGTGKSSLIAAAATESV---PEK-VPPVHAPTR-LP---PD------------F------Y-----   55 (643)
Q Consensus         7 ~~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~---~~~-~~~~~~~~~-~~---~~------------~------~-----   55 (643)
                      +...++++|+++|+.++|||||+.+|.+...   ... ..+   .+. ..   ..            +      .     
T Consensus         4 ~~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg---~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (411)
T PRK04000          4 EKVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRG---ITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSE   80 (411)
T ss_pred             ccCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcC---cEEEecccccccccccccCccccccccccccccccc
Confidence            4677889999999999999999999965321   110 111   110 00   00            0      0     


Q ss_pred             -CCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECCCcc-cHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCcc
Q 006490           56 -PDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQS-TLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA  133 (643)
Q Consensus        56 -~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~~~-s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~  133 (643)
                       .....+++|||||++++....-..+..+|++++|+|++++. ..+...  .+..+.... ..|+++|+||+|+.+....
T Consensus        81 ~~~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~--~l~~l~~~~-i~~iiVVlNK~Dl~~~~~~  157 (411)
T PRK04000         81 TELLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKE--HLMALDIIG-IKNIVIVQNKIDLVSKERA  157 (411)
T ss_pred             cccccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHH--HHHHHHHcC-CCcEEEEEEeeccccchhH
Confidence             00367999999998877665556666789999999998653 222221  223344331 2479999999999754321


Q ss_pred             chhhhhhhHHHHhh-cccceEEEeCcccCCChhHHHHHHHHHHh
Q 006490          134 TSLEEVMGPIMQQF-REIETCVECSATTMIQVPDVFYYAQKAVL  176 (643)
Q Consensus       134 ~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~  176 (643)
                      ....+.+..+.+.. ....+++++||++|.|+++|++.+...+.
T Consensus       158 ~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~  201 (411)
T PRK04000        158 LENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIP  201 (411)
T ss_pred             HHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence            01112222332221 11246899999999999999999887654

>PF08355 EF_assoc_1: EF hand associated; InterPro: IPR013566 This region typically appears on the C terminus of EF hands in GTP-binding proteins such as Arht/Rhot (may be involved in mitochondrial homeostasis and apoptosis[])

Probab=99.52  E-value=9.9e-15  Score=112.64  Aligned_cols=70  Identities=47%  Similarity=0.877  Sum_probs=67.1

Q ss_pred             CCCCCCCCCCccccCCcccchhhhhhhhhhhhccCHHHHHHHHHHhcCCC-----Cccccchhccchhhhhhhcc
Q 006490          349 PWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGG-----DPAAALRVTRKRSVDRKKQQ  418 (643)
Q Consensus       349 p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~l~~~g~~~-----~~~~~~~~~~~~~~~~~~~~  418 (643)
                      ||.+..++.+++++++|.|+++||+++|.|+++++++.++++|+|+||++     ++..+++++++|+.++++++
T Consensus         1 PW~~~~~~~~~~~n~~G~iTl~gfLa~W~l~T~ld~~~tle~L~YLGy~~~~~~~~~~~Ai~VTr~R~~d~~k~~   75 (76)
T PF08355_consen    1 PWIEPDFPDSVVTNEKGWITLQGFLAQWSLTTLLDPKRTLEYLAYLGYPGLSEQDSQTSAITVTRPRRLDRKKGQ   75 (76)
T ss_pred             CCCCCCCcceeEEcCCCcCcHHHHHHHHHHHHHhCHHHHHHHHhhcCCCCccCCCCchhheEEcCchhhhhhccC
Confidence            89999999999999999999999999999999999999999999999999     89999999999999887754

The EF hand associated region is found in yeast, vertebrates and plants.

>COG2262 HflX GTPases [General function prediction only]

Probab=99.51  E-value=2.3e-13  Score=136.93  Aligned_cols=155  Identities=21%  Similarity=0.166  Sum_probs=110.4

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCC-CCCC-CCCCCCCeeeCCcccCCceeEEEEeCCCCCcch--hhhH------Hhh
Q 006490           11 TGVRVVVVGDRGTGKSSLIAAAATES-VPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENK--GKLN------EEL   80 (643)
Q Consensus        11 ~~~kI~lvG~~~vGKSsL~n~l~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--~~~~------~~~   80 (643)
                      .-..|+++|-.|+|||||+|+|++.. ++.+ ...+..+++....+.+ +..+.+.||.|+...-  .+..      ...
T Consensus       191 ~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~  269 (411)
T COG2262         191 GIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTLEEV  269 (411)
T ss_pred             CCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHHHHh
Confidence            34579999999999999999999877 4444 3334444444334433 6789999999976421  1111      446


Q ss_pred             ccCCEEEEEEECCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcc
Q 006490           81 KRADAVVLTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT  159 (643)
Q Consensus        81 ~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  159 (643)
                      ..||+++.|+|++++.-.+.+.. ....+.+. ..++|+|+|.||+|+..+..      ....+....+   ..+.+||+
T Consensus       270 ~~aDlllhVVDaSdp~~~~~~~~-v~~vL~el~~~~~p~i~v~NKiD~~~~~~------~~~~~~~~~~---~~v~iSA~  339 (411)
T COG2262         270 KEADLLLHVVDASDPEILEKLEA-VEDVLAEIGADEIPIILVLNKIDLLEDEE------ILAELERGSP---NPVFISAK  339 (411)
T ss_pred             hcCCEEEEEeecCChhHHHHHHH-HHHHHHHcCCCCCCEEEEEecccccCchh------hhhhhhhcCC---CeEEEEec
Confidence            78999999999999977666663 56666654 34799999999999875422      1122222222   48999999


Q ss_pred             cCCChhHHHHHHHHHHh
Q 006490          160 TMIQVPDVFYYAQKAVL  176 (643)
Q Consensus       160 ~~~gi~~l~~~i~~~~~  176 (643)
                      +|.|++.|.+.|...+.
T Consensus       340 ~~~gl~~L~~~i~~~l~  356 (411)
T COG2262         340 TGEGLDLLRERIIELLS  356 (411)
T ss_pred             cCcCHHHHHHHHHHHhh
Confidence            99999999999888765

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.51  E-value=1.5e-13  Score=116.03  Aligned_cols=163  Identities=16%  Similarity=0.233  Sum_probs=120.5

Q ss_pred             CCCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEE
Q 006490            7 SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV   86 (643)
Q Consensus         7 ~~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i   86 (643)
                      +..++++||.++|-.|+|||||+..|.+.....-.|+ .+-..+.+.+ .+.+++++||.+|+..-...|..|+.+.|++
T Consensus        12 s~t~rEirilllGldnAGKTT~LKqL~sED~~hltpT-~GFn~k~v~~-~g~f~LnvwDiGGqr~IRpyWsNYyenvd~l   89 (185)
T KOG0074|consen   12 SRTRREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPT-NGFNTKKVEY-DGTFHLNVWDIGGQRGIRPYWSNYYENVDGL   89 (185)
T ss_pred             CCCcceEEEEEEecCCCcchhHHHHHccCChhhcccc-CCcceEEEee-cCcEEEEEEecCCccccchhhhhhhhccceE
Confidence            3457899999999999999999999998875444443 2222222222 4458999999999998889999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCCCCCccchhhhhhhHHH-Hhhc-ccceEEEeCcccCCC
Q 006490           87 VLTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIM-QQFR-EIETCVECSATTMIQ  163 (643)
Q Consensus        87 l~v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~Sa~~~~g  163 (643)
                      |+|+|.++...++++.+++.+.+... -...|+.+..||-|+......   ++....+- ..+. ..-++-+|||..+.|
T Consensus        90 IyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~---eeia~klnl~~lrdRswhIq~csals~eg  166 (185)
T KOG0074|consen   90 IYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKV---EEIALKLNLAGLRDRSWHIQECSALSLEG  166 (185)
T ss_pred             EEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcch---HHHHHhcchhhhhhceEEeeeCccccccC
Confidence            99999999999999888777777542 347899999999998754332   11111100 0000 112578999999999


Q ss_pred             hhHHHHHHHHH
Q 006490          164 VPDVFYYAQKA  174 (643)
Q Consensus       164 i~~l~~~i~~~  174 (643)
                      +.+-.++++..
T Consensus       167 ~~dg~~wv~sn  177 (185)
T KOG0074|consen  167 STDGSDWVQSN  177 (185)
T ss_pred             ccCcchhhhcC
Confidence            99988888764

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.50  E-value=3.6e-13  Score=128.92  Aligned_cols=169  Identities=17%  Similarity=0.101  Sum_probs=107.5

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchh---hh--------HHh
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKG---KL--------NEE   79 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~---~~--------~~~   79 (643)
                      ++|+|+|.+|||||||+|++++...........+.|+  ........+..+.++||||+.+...   ..        ...
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~   80 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS   80 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence            4799999999999999999999874322211111121  2222334678899999999875421   11        123


Q ss_pred             hccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCC---CCcEEEEEecccCCCCCccch----hhhhhhHHHHhhcccce
Q 006490           80 LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEI---KVPIIVAGCKLDLRGDHNATS----LEEVMGPIMQQFREIET  152 (643)
Q Consensus        80 ~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~---~~pvilv~NK~D~~~~~~~~~----~~~~~~~~~~~~~~~~~  152 (643)
                      ..++|++|+|+++.. .+.++  ...++.+++...   -.++++|.|++|.........    ....++.+.+.++....
T Consensus        81 ~~g~~~illVi~~~~-~t~~d--~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~  157 (196)
T cd01852          81 APGPHAFLLVVPLGR-FTEEE--EQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYV  157 (196)
T ss_pred             CCCCEEEEEEEECCC-cCHHH--HHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEE
Confidence            567899999999877 33322  235556654321   368999999999765432101    12456677777775422


Q ss_pred             EEEe---CcccCCChhHHHHHHHHHHhCCCCCCCc
Q 006490          153 CVEC---SATTMIQVPDVFYYAQKAVLHPTAPLFD  184 (643)
Q Consensus       153 ~~~~---Sa~~~~gi~~l~~~i~~~~~~~~~~~~~  184 (643)
                      .+.-   |+..+.++.+|++.+.+.+.....+.|.
T Consensus       158 ~f~~~~~~~~~~~q~~~Ll~~i~~~~~~~~~~~~~  192 (196)
T cd01852         158 AFNNKAKGEEQEQQVKELLAKVESMVKENGGKPYT  192 (196)
T ss_pred             EEeCCCCcchhHHHHHHHHHHHHHHHHhcCCCCCC
Confidence            2222   2567899999999998888765554443

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>PRK12736 elongation factor Tu; Reviewed

Probab=99.50  E-value=2.2e-13  Score=144.07  Aligned_cols=165  Identities=15%  Similarity=0.192  Sum_probs=106.9

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHhcCCCCC-----------CCCC---CCCCee--eCCcccCCceeEEEEeCCCCCc
Q 006490            8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPE-----------KVPP---VHAPTR--LPPDFYPDRVPVTIIDTSSSLE   71 (643)
Q Consensus         8 ~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~-----------~~~~---~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~   71 (643)
                      ..+++++|+++|+.++|||||+++|++.....           +...   ..+.+.  ....+..++..+.++||||+++
T Consensus         8 ~~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~   87 (394)
T PRK12736          8 RSKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHAD   87 (394)
T ss_pred             cCCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHH
Confidence            35678999999999999999999998631100           0000   011111  2233445667899999999888


Q ss_pred             chhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCc-EEEEEecccCCCCCccch-hhhhhhHHHHhhcc
Q 006490           72 NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVP-IIVAGCKLDLRGDHNATS-LEEVMGPIMQQFRE  149 (643)
Q Consensus        72 ~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p-vilv~NK~D~~~~~~~~~-~~~~~~~~~~~~~~  149 (643)
                      +.......+..+|++++|+|++.......  ...+..+...  ++| +|+|+||+|+........ ..+.+..+...++.
T Consensus        88 f~~~~~~~~~~~d~~llVvd~~~g~~~~t--~~~~~~~~~~--g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~  163 (394)
T PRK12736         88 YVKNMITGAAQMDGAILVVAATDGPMPQT--REHILLARQV--GVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDF  163 (394)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCCchhH--HHHHHHHHHc--CCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCC
Confidence            77766677888999999999876533322  2355566665  788 678999999874322101 12234444444432


Q ss_pred             ---cceEEEeCcccCC--------ChhHHHHHHHHHHh
Q 006490          150 ---IETCVECSATTMI--------QVPDVFYYAQKAVL  176 (643)
Q Consensus       150 ---~~~~~~~Sa~~~~--------gi~~l~~~i~~~~~  176 (643)
                         ..+++++||.+|.        ++.+|++.+.+.+.
T Consensus       164 ~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp  201 (394)
T PRK12736        164 PGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP  201 (394)
T ss_pred             CcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence               2378999999983        56677776665543

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.50  E-value=4.4e-13  Score=131.42  Aligned_cols=114  Identities=17%  Similarity=0.124  Sum_probs=79.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCC-----CC-Ccc----------cceEEEEEEcCCCcEEEEEEecCCchhhhhh
Q 006490          425 RCLLFGPQNAGKSALLNSFLERPFSENY-----AP-TTG----------EQYAVNVVDQPGGNKKTLILQEIPEEGVKKI  488 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~~~~~~~-----~~-t~~----------~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~  488 (643)
                      +|+++|.+|+|||||+++|+........     .. +..          ...............++.+|||+|+..+...
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~   80 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE   80 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence            4899999999999999999864322111     11 111          1122222222324567888999999877665


Q ss_pred             hccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC
Q 006490          489 LSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP  547 (643)
Q Consensus       489 ~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~  547 (643)
                        +..+++.+|++++|+|++++... ....++..+...      ++|+++++||+|+..
T Consensus        81 --~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~~------~~P~iivvNK~D~~~  130 (237)
T cd04168          81 --VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRKL------NIPTIIFVNKIDRAG  130 (237)
T ss_pred             --HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHHc------CCCEEEEEECccccC
Confidence              67889999999999999987653 345555555544      899999999999874

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.49  E-value=2.3e-13  Score=131.34  Aligned_cols=154  Identities=16%  Similarity=0.228  Sum_probs=108.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhH-------HhhccCC
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATESV-PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLN-------EELKRAD   84 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~~~~~ad   84 (643)
                      ..|.+||-||+|||||+|+|...+. +.+|+-|+-...+......+...+.+-|.||+.+...+-.       ..+++++
T Consensus       197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~  276 (366)
T KOG1489|consen  197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERCK  276 (366)
T ss_pred             cccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHhhc
Confidence            4578999999999999999998773 3334432211123222223334499999999876443322       5678899


Q ss_pred             EEEEEEECCCc---ccHHHHHHHHHHHHHhcC---CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCc
Q 006490           85 AVVLTYACNQQ---STLSRLSSYWLPELRRLE---IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSA  158 (643)
Q Consensus        85 ~il~v~d~~~~---~s~~~~~~~~~~~l~~~~---~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  158 (643)
                      ..+||+|++.+   ...+.+.. +..+++.+.   .+.|.++|+||+|+.+.     ....+.++...+.+. .++++||
T Consensus       277 ~l~fVvD~s~~~~~~p~~~~~l-L~~ELe~yek~L~~rp~liVaNKiD~~ea-----e~~~l~~L~~~lq~~-~V~pvsA  349 (366)
T KOG1489|consen  277 GLLFVVDLSGKQLRNPWQQLQL-LIEELELYEKGLADRPALIVANKIDLPEA-----EKNLLSSLAKRLQNP-HVVPVSA  349 (366)
T ss_pred             eEEEEEECCCcccCCHHHHHHH-HHHHHHHHhhhhccCceEEEEeccCchhH-----HHHHHHHHHHHcCCC-cEEEeee
Confidence            99999999988   66666663 666665543   47899999999998632     223346677777642 5899999


Q ss_pred             ccCCChhHHHHHHHH
Q 006490          159 TTMIQVPDVFYYAQK  173 (643)
Q Consensus       159 ~~~~gi~~l~~~i~~  173 (643)
                      +.++|+.++++.+..
T Consensus       350 ~~~egl~~ll~~lr~  364 (366)
T KOG1489|consen  350 KSGEGLEELLNGLRE  364 (366)
T ss_pred             ccccchHHHHHHHhh
Confidence            999999999886643

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.49  E-value=8.8e-14  Score=150.94  Aligned_cols=130  Identities=14%  Similarity=0.119  Sum_probs=89.9

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCC---------C-CC------------eeeCCcccCCceeEEEEeCCC
Q 006490           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPV---------H-AP------------TRLPPDFYPDRVPVTIIDTSS   68 (643)
Q Consensus        11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~---------~-~~------------~~~~~~~~~~~~~~~i~Dt~G   68 (643)
                      +..+|+|+|++|+|||||+++|+...-.....+.         . .+            ......+..+++.+++|||||
T Consensus         9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG   88 (526)
T PRK00741          9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG   88 (526)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence            3457999999999999999999742211110000         0 00            001123456788999999999


Q ss_pred             CCcchhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhc
Q 006490           69 SLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR  148 (643)
Q Consensus        69 ~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~  148 (643)
                      +.++......+++.+|++|+|+|+++.....  ...++...+..  ++|+++++||+|+....    ..+.+..+...++
T Consensus        89 ~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~--t~~l~~~~~~~--~iPiiv~iNK~D~~~a~----~~~~l~~i~~~l~  160 (526)
T PRK00741         89 HEDFSEDTYRTLTAVDSALMVIDAAKGVEPQ--TRKLMEVCRLR--DTPIFTFINKLDRDGRE----PLELLDEIEEVLG  160 (526)
T ss_pred             chhhHHHHHHHHHHCCEEEEEEecCCCCCHH--HHHHHHHHHhc--CCCEEEEEECCcccccC----HHHHHHHHHHHhC
Confidence            9988887888999999999999988764332  23466666655  89999999999987642    3344555666665

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.49  E-value=9e-13  Score=117.91  Aligned_cols=159  Identities=18%  Similarity=0.135  Sum_probs=117.8

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCC-------CCCCCCCeeeCCccc----CCceeEEEEeCCCCCcchhhhH
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEK-------VPPVHAPTRLPPDFY----PDRVPVTIIDTSSSLENKGKLN   77 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~-------~~~~~~~~~~~~~~~----~~~~~~~i~Dt~G~~~~~~~~~   77 (643)
                      .....||+|.|+-++||||++.++.....+..       .......++...++.    .++..+.++||||++++.-+++
T Consensus         7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~~   86 (187)
T COG2229           7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMWE   86 (187)
T ss_pred             cccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHHHH
Confidence            56678999999999999999999998763111       111111233333333    3457899999999999999999


Q ss_pred             HhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeC
Q 006490           78 EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECS  157 (643)
Q Consensus        78 ~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  157 (643)
                      .+.+++.++|+++|.+.+..++. . .++..+.... .+|+++++||.|+......    +.++++.+....-.+.++++
T Consensus        87 ~l~~ga~gaivlVDss~~~~~~a-~-~ii~f~~~~~-~ip~vVa~NK~DL~~a~pp----e~i~e~l~~~~~~~~vi~~~  159 (187)
T COG2229          87 ILSRGAVGAIVLVDSSRPITFHA-E-EIIDFLTSRN-PIPVVVAINKQDLFDALPP----EKIREALKLELLSVPVIEID  159 (187)
T ss_pred             HHhCCcceEEEEEecCCCcchHH-H-HHHHHHhhcc-CCCEEEEeeccccCCCCCH----HHHHHHHHhccCCCceeeee
Confidence            99999999999999999988833 3 4777776653 2999999999999876433    33333333321123789999


Q ss_pred             cccCCChhHHHHHHHHH
Q 006490          158 ATTMIQVPDVFYYAQKA  174 (643)
Q Consensus       158 a~~~~gi~~l~~~i~~~  174 (643)
                      |..+.+..+.++.+...
T Consensus       160 a~e~~~~~~~L~~ll~~  176 (187)
T COG2229         160 ATEGEGARDQLDVLLLK  176 (187)
T ss_pred             cccchhHHHHHHHHHhh
Confidence            99999999988877765

>CHL00071 tufA elongation factor Tu

Probab=99.49  E-value=8.8e-13  Score=140.24  Aligned_cols=147  Identities=16%  Similarity=0.116  Sum_probs=98.4

Q ss_pred             cCceEEEEEEcCCCCCHHHHHHHHhcCCCCC------CCC----------CCcccceEEEEEEcCCCcEEEEEEecCCch
Q 006490          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSE------NYA----------PTTGEQYAVNVVDQPGGNKKTLILQEIPEE  483 (643)
Q Consensus       420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~------~~~----------~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~  483 (643)
                      .+..++|+++|.+|+|||||+++|++..-..      .+.          ..++.+.....+..  +...+.++|++|+.
T Consensus         9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~--~~~~~~~iDtPGh~   86 (409)
T CHL00071          9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYET--ENRHYAHVDCPGHA   86 (409)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEcc--CCeEEEEEECCChH
Confidence            3456899999999999999999999752111      000          11111111122222  44567789999987


Q ss_pred             hhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCc-EEEEEeCCCCCCcccc----HHHHHHH
Q 006490          484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVP-CLLIASKDDLKPYTMA----VQDSARV  558 (643)
Q Consensus       484 ~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~p-vilv~NK~Dl~~~~~~----~~~~~~~  558 (643)
                      .+...  ....+..+|++++|+|+..+.. .+....+..+...      ++| +|+++||+|+......    .+++..+
T Consensus        87 ~~~~~--~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~~~~------g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~  157 (409)
T CHL00071         87 DYVKN--MITGAAQMDGAILVVSAADGPM-PQTKEHILLAKQV------GVPNIVVFLNKEDQVDDEELLELVELEVREL  157 (409)
T ss_pred             HHHHH--HHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHHHHc------CCCEEEEEEEccCCCCHHHHHHHHHHHHHHH
Confidence            66544  5677889999999999987644 3344444444444      788 7789999999864332    3456666


Q ss_pred             HHHhCC----CCcEEeeeccC-CH
Q 006490          559 TQELGI----EPPIPVSMKSK-DL  577 (643)
Q Consensus       559 ~~~~~~----~~~~~vSa~~g-~i  577 (643)
                      .+..++    .+++++||++| |+
T Consensus       158 l~~~~~~~~~~~ii~~Sa~~g~n~  181 (409)
T CHL00071        158 LSKYDFPGDDIPIVSGSALLALEA  181 (409)
T ss_pred             HHHhCCCCCcceEEEcchhhcccc
Confidence            666665    36899999988 63

>PRK12736 elongation factor Tu; Reviewed

Probab=99.49  E-value=8.8e-13  Score=139.54  Aligned_cols=161  Identities=16%  Similarity=0.141  Sum_probs=105.2

Q ss_pred             cCceEEEEEEcCCCCCHHHHHHHHhcCCCC------CCCC-----C---CcccceEEEEEEcCCCcEEEEEEecCCchhh
Q 006490          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFS------ENYA-----P---TTGEQYAVNVVDQPGGNKKTLILQEIPEEGV  485 (643)
Q Consensus       420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~------~~~~-----~---t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~  485 (643)
                      .+..++|+++|..++|||||+++|++....      ..+.     +   ..+................+.++|++|++.+
T Consensus         9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f   88 (394)
T PRK12736          9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY   88 (394)
T ss_pred             CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence            345689999999999999999999863210      0000     0   0111111222233324556788999998876


Q ss_pred             hhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCc-EEEEEeCCCCCCcccc----HHHHHHHHH
Q 006490          486 KKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVP-CLLIASKDDLKPYTMA----VQDSARVTQ  560 (643)
Q Consensus       486 ~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~p-vilv~NK~Dl~~~~~~----~~~~~~~~~  560 (643)
                      ...  ....+..+|++++|+|++++.. .+..+.+..+...      ++| +|+++||+|+.+....    .+++..+.+
T Consensus        89 ~~~--~~~~~~~~d~~llVvd~~~g~~-~~t~~~~~~~~~~------g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~  159 (394)
T PRK12736         89 VKN--MITGAAQMDGAILVVAATDGPM-PQTREHILLARQV------GVPYLVVFLNKVDLVDDEELLELVEMEVRELLS  159 (394)
T ss_pred             HHH--HHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHHHc------CCCEEEEEEEecCCcchHHHHHHHHHHHHHHHH
Confidence            554  5667789999999999987643 2234444444443      788 6788999999753322    235556666


Q ss_pred             HhCC----CCcEEeeeccC---------CHHHHHHHHHHHHh
Q 006490          561 ELGI----EPPIPVSMKSK---------DLNNVFSRIIWAAE  589 (643)
Q Consensus       561 ~~~~----~~~~~vSa~~g---------~i~~l~~~l~~~~~  589 (643)
                      ..++    .+++++||++|         ++.++++.+.+.+.
T Consensus       160 ~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp  201 (394)
T PRK12736        160 EYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP  201 (394)
T ss_pred             HhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence            6665    36999999997         35677777776654

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.49  E-value=5.9e-13  Score=146.41  Aligned_cols=152  Identities=20%  Similarity=0.184  Sum_probs=96.2

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCc--ccceEEEEEEc----CCCc-----E-----EEEEEecCCchhhh
Q 006490          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTT--GEQYAVNVVDQ----PGGN-----K-----KTLILQEIPEEGVK  486 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~--~~~~~~~~v~~----~g~~-----~-----~~~i~d~~g~~~~~  486 (643)
                      +..|+|+|.+|+|||||+|+|.+...........  .........+.    .|..     .     .+.+|||+|++.+.
T Consensus         6 ~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f~   85 (586)
T PRK04004          6 QPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAFT   85 (586)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHHH
Confidence            4579999999999999999998775443332211  11111111110    0110     0     15789999999887


Q ss_pred             hhhccHHhhccCCEEEEEEeCCCh---hhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccc-------------
Q 006490          487 KILSNKEALASCDVTIFVYDSSDE---YSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-------------  550 (643)
Q Consensus       487 ~~~~~~~~~~~ad~illv~D~s~~---~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~-------------  550 (643)
                      .+  +...+..+|++++|+|++++   .+++.+    ..+...      ++|+++++||+|+.....             
T Consensus        86 ~~--~~~~~~~aD~~IlVvDa~~g~~~qt~e~i----~~~~~~------~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~  153 (586)
T PRK04004         86 NL--RKRGGALADIAILVVDINEGFQPQTIEAI----NILKRR------KTPFVVAANKIDRIPGWKSTEDAPFLESIEK  153 (586)
T ss_pred             HH--HHHhHhhCCEEEEEEECCCCCCHhHHHHH----HHHHHc------CCCEEEEEECcCCchhhhhhcCchHHHHHhh
Confidence            76  56677899999999999984   443332    222222      799999999999853100             


Q ss_pred             ----cHH----H---HHHHHHHhC--------------CCCcEEeeeccC-CHHHHHHHHHH
Q 006490          551 ----AVQ----D---SARVTQELG--------------IEPPIPVSMKSK-DLNNVFSRIIW  586 (643)
Q Consensus       551 ----~~~----~---~~~~~~~~~--------------~~~~~~vSa~~g-~i~~l~~~l~~  586 (643)
                          ..+    .   ........|              ..+++++||++| |++++++.+..
T Consensus       154 ~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~  215 (586)
T PRK04004        154 QSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG  215 (586)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence                000    0   001112222              235899999999 99999988865

>cd04167 Snu114p Snu114p subfamily

Probab=99.49  E-value=4.1e-13  Score=130.27  Aligned_cols=145  Identities=16%  Similarity=0.138  Sum_probs=95.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCC-----------CCCc------ccceE--EEEE--E-cCCCcEEEEEEecCCc
Q 006490          425 RCLLFGPQNAGKSALLNSFLERPFSENY-----------APTT------GEQYA--VNVV--D-QPGGNKKTLILQEIPE  482 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~~~~~~~-----------~~t~------~~~~~--~~~v--~-~~g~~~~~~i~d~~g~  482 (643)
                      +|+|+|.+++|||||+++|+........           ..+.      +....  ...+  . ..+....+.+|||+|+
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            5899999999999999999976544321           0000      00111  1111  1 1334567889999999


Q ss_pred             hhhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCc------cc------
Q 006490          483 EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPY------TM------  550 (643)
Q Consensus       483 ~~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~------~~------  550 (643)
                      ..+...  ...++..+|++++|+|++++.++. ...++......      ++|+++|+||+|+...      ..      
T Consensus        82 ~~f~~~--~~~~~~~aD~~llVvD~~~~~~~~-~~~~~~~~~~~------~~p~iiviNK~D~~~~~~~l~~~~~~~~l~  152 (213)
T cd04167          82 VNFMDE--VAAALRLSDGVVLVVDVVEGVTSN-TERLIRHAILE------GLPIVLVINKIDRLILELKLPPNDAYFKLR  152 (213)
T ss_pred             cchHHH--HHHHHHhCCEEEEEEECCCCCCHH-HHHHHHHHHHc------CCCEEEEEECcccCcccccCCHHHHHHHHH
Confidence            887655  677889999999999999876643 34444444332      7899999999998621      11      


Q ss_pred             -cHHHHHHHHHHhCC------C----CcEEeeeccC-CHH
Q 006490          551 -AVQDSARVTQELGI------E----PPIPVSMKSK-DLN  578 (643)
Q Consensus       551 -~~~~~~~~~~~~~~------~----~~~~vSa~~g-~i~  578 (643)
                       ..+.+..++..+++      .    ++++.||+.+ ++.
T Consensus       153 ~~i~~~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~  192 (213)
T cd04167         153 HIIDEVNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFT  192 (213)
T ss_pred             HHHHHHHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEe
Confidence             13344445555544      2    2678999988 754

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.49  E-value=7.7e-13  Score=127.75  Aligned_cols=111  Identities=14%  Similarity=0.175  Sum_probs=79.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCC--CCCCCCCC------------Ce----eeCCccc--------CCceeEEEEeCC
Q 006490           14 RVVVVGDRGTGKSSLIAAAATESVP--EKVPPVHA------------PT----RLPPDFY--------PDRVPVTIIDTS   67 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~~~~~--~~~~~~~~------------~~----~~~~~~~--------~~~~~~~i~Dt~   67 (643)
                      +|+|+|+.++|||||+.+|+...-.  ....+...            .+    .....+.        ..++.+++||||
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP   81 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP   81 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence            5999999999999999999865411  11111000            00    0111222        237889999999


Q ss_pred             CCCcchhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCC
Q 006490           68 SSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLR  128 (643)
Q Consensus        68 G~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~  128 (643)
                      |+.++......+++.+|++|+|+|++...+.+..  .++......  ++|+|+|+||+|+.
T Consensus        82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~--~~l~~~~~~--~~p~ilviNKiD~~  138 (222)
T cd01885          82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTE--TVLRQALKE--RVKPVLVINKIDRL  138 (222)
T ss_pred             CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHH--HHHHHHHHc--CCCEEEEEECCCcc
Confidence            9999999999999999999999999887665543  244444444  68999999999986

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>PRK12735 elongation factor Tu; Reviewed

Probab=99.48  E-value=8.8e-13  Score=139.62  Aligned_cols=161  Identities=15%  Similarity=0.141  Sum_probs=103.9

Q ss_pred             cCceEEEEEEcCCCCCHHHHHHHHhcC------CCCCCCC--C-Cc-----ccceEEEEEEcCCCcEEEEEEecCCchhh
Q 006490          420 ERNVFRCLLFGPQNAGKSALLNSFLER------PFSENYA--P-TT-----GEQYAVNVVDQPGGNKKTLILQEIPEEGV  485 (643)
Q Consensus       420 ~~~~~ki~ivG~~nvGKSSLln~l~~~------~~~~~~~--~-t~-----~~~~~~~~v~~~g~~~~~~i~d~~g~~~~  485 (643)
                      .+..++|+++|.+++|||||+++|++.      .....+.  . +.     +................+.++||+|++.+
T Consensus         9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f   88 (396)
T PRK12735          9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADY   88 (396)
T ss_pred             CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHH
Confidence            345689999999999999999999962      1110000  0 00     11111112222223456788999999766


Q ss_pred             hhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEE-EEEeCCCCCCcccc----HHHHHHHHH
Q 006490          486 KKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCL-LIASKDDLKPYTMA----VQDSARVTQ  560 (643)
Q Consensus       486 ~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvi-lv~NK~Dl~~~~~~----~~~~~~~~~  560 (643)
                      ..-  ....+..+|++++|+|+.++.. .+..+.+..+...      ++|.+ +++||+|+......    ..+++.+.+
T Consensus        89 ~~~--~~~~~~~aD~~llVvda~~g~~-~qt~e~l~~~~~~------gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~  159 (396)
T PRK12735         89 VKN--MITGAAQMDGAILVVSAADGPM-PQTREHILLARQV------GVPYIVVFLNKCDMVDDEELLELVEMEVRELLS  159 (396)
T ss_pred             HHH--HHhhhccCCEEEEEEECCCCCc-hhHHHHHHHHHHc------CCCeEEEEEEecCCcchHHHHHHHHHHHHHHHH
Confidence            543  5677789999999999988643 2333444444433      78865 57999999753222    335666677


Q ss_pred             HhCC----CCcEEeeeccC-C----------HHHHHHHHHHHHh
Q 006490          561 ELGI----EPPIPVSMKSK-D----------LNNVFSRIIWAAE  589 (643)
Q Consensus       561 ~~~~----~~~~~vSa~~g-~----------i~~l~~~l~~~~~  589 (643)
                      .+++    .+++++||++| |          +.+|++.|...+.
T Consensus       160 ~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~  203 (396)
T PRK12735        160 KYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP  203 (396)
T ss_pred             HcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence            7665    35899999997 3          5677777776544

>PRK12735 elongation factor Tu; Reviewed

Probab=99.48  E-value=3.3e-13  Score=142.81  Aligned_cols=152  Identities=16%  Similarity=0.160  Sum_probs=98.1

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHhcCC-------CC----CCCCC---CCCCee--eCCcccCCceeEEEEeCCCCCc
Q 006490            8 SSRTGVRVVVVGDRGTGKSSLIAAAATES-------VP----EKVPP---VHAPTR--LPPDFYPDRVPVTIIDTSSSLE   71 (643)
Q Consensus         8 ~~~~~~kI~lvG~~~vGKSsL~n~l~~~~-------~~----~~~~~---~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~   71 (643)
                      ..++.++|+++|++++|||||+++|++..       +.    .+..+   ..+.+.  ....+..++..+.++||||+.+
T Consensus         8 ~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~   87 (396)
T PRK12735          8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHAD   87 (396)
T ss_pred             CCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHH
Confidence            45778999999999999999999998621       10    00000   011111  1223445567899999999987


Q ss_pred             chhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEE-EEEecccCCCCCcc-chhhhhhhHHHHhhcc
Q 006490           72 NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPII-VAGCKLDLRGDHNA-TSLEEVMGPIMQQFRE  149 (643)
Q Consensus        72 ~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvi-lv~NK~D~~~~~~~-~~~~~~~~~~~~~~~~  149 (643)
                      +.......+..+|++++|+|+......+..  ..+..+...  ++|.+ +|+||+|+...... ......+..+...++.
T Consensus        88 f~~~~~~~~~~aD~~llVvda~~g~~~qt~--e~l~~~~~~--gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~  163 (396)
T PRK12735         88 YVKNMITGAAQMDGAILVVSAADGPMPQTR--EHILLARQV--GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDF  163 (396)
T ss_pred             HHHHHHhhhccCCEEEEEEECCCCCchhHH--HHHHHHHHc--CCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCC
Confidence            777677788899999999998865332221  344555555  68865 57999999743211 0122234445554432


Q ss_pred             ---cceEEEeCcccCCC
Q 006490          150 ---IETCVECSATTMIQ  163 (643)
Q Consensus       150 ---~~~~~~~Sa~~~~g  163 (643)
                         ..+++++||.+|.|
T Consensus       164 ~~~~~~ii~~Sa~~g~n  180 (396)
T PRK12735        164 PGDDTPIIRGSALKALE  180 (396)
T ss_pred             CcCceeEEecchhcccc
Confidence               24689999999854

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.48  E-value=2.2e-13  Score=119.55  Aligned_cols=136  Identities=22%  Similarity=0.285  Sum_probs=91.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCC----cchhhhHHhhccCCEEEEE
Q 006490           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSL----ENKGKLNEELKRADAVVLT   89 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----~~~~~~~~~~~~ad~il~v   89 (643)
                      ||+|+|+.|||||||+++|.+......  .    |. ...+     .=.++||||-.    .+....-....+||++++|
T Consensus         3 rimliG~~g~GKTTL~q~L~~~~~~~~--K----Tq-~i~~-----~~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll   70 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGEEIRYK--K----TQ-AIEY-----YDNTIDTPGEYIENPRFYHALIVTAQDADVVLLL   70 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCCCCcC--c----cc-eeEe-----cccEEECChhheeCHHHHHHHHHHHhhCCEEEEE
Confidence            799999999999999999999764211  1    00 0111     12459999943    1222233456789999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHHH
Q 006490           90 YACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY  169 (643)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  169 (643)
                      .|++++.+.-.-.  +.   ..+  ++|+|-|+||+|+..+...  . +..+.+.+.-| ...+|++|+.+|+||++|.+
T Consensus        71 ~dat~~~~~~pP~--fa---~~f--~~pvIGVITK~Dl~~~~~~--i-~~a~~~L~~aG-~~~if~vS~~~~eGi~eL~~  139 (143)
T PF10662_consen   71 QDATEPRSVFPPG--FA---SMF--NKPVIGVITKIDLPSDDAN--I-ERAKKWLKNAG-VKEIFEVSAVTGEGIEELKD  139 (143)
T ss_pred             ecCCCCCccCCch--hh---ccc--CCCEEEEEECccCccchhh--H-HHHHHHHHHcC-CCCeEEEECCCCcCHHHHHH
Confidence            9999875533211  22   222  6899999999999843221  2 33445555555 34689999999999999998


Q ss_pred             HHH
Q 006490          170 YAQ  172 (643)
Q Consensus       170 ~i~  172 (643)
                      .+.
T Consensus       140 ~L~  142 (143)
T PF10662_consen  140 YLE  142 (143)
T ss_pred             HHh
Confidence            763

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.48  E-value=1.4e-12  Score=127.27  Aligned_cols=163  Identities=21%  Similarity=0.226  Sum_probs=113.5

Q ss_pred             cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCc-----hhhhhh-hccHH
Q 006490          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE-----EGVKKI-LSNKE  493 (643)
Q Consensus       420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~-----~~~~~~-~~~~~  493 (643)
                      ......|+|.|.||||||||++++++.+....+.|-|+-...+-.++.+  ...+.++||+|-     ++...+ .++..
T Consensus       165 dp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~--~~R~QvIDTPGlLDRPl~ErN~IE~qAi~  242 (346)
T COG1084         165 DPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERG--YLRIQVIDTPGLLDRPLEERNEIERQAIL  242 (346)
T ss_pred             CCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecC--CceEEEecCCcccCCChHHhcHHHHHHHH
Confidence            4466889999999999999999999988777777755545555555544  345667899982     111111 12344


Q ss_pred             hhc-cCCEEEEEEeCCC--hhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEe
Q 006490          494 ALA-SCDVTIFVYDSSD--EYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPV  570 (643)
Q Consensus       494 ~~~-~ad~illv~D~s~--~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v  570 (643)
                      +++ =+++|+|++|.+.  +-+.+.-..++.++....     +.|+++|+||+|........+.... ...-+......+
T Consensus       243 AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f-----~~p~v~V~nK~D~~~~e~~~~~~~~-~~~~~~~~~~~~  316 (346)
T COG1084         243 ALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELF-----KAPIVVVINKIDIADEEKLEEIEAS-VLEEGGEEPLKI  316 (346)
T ss_pred             HHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc-----CCCeEEEEecccccchhHHHHHHHH-HHhhccccccce
Confidence            454 4789999999986  345566666777777664     6899999999998864433333333 334444446889


Q ss_pred             eeccC-CHHHHHHHHHHHHhC
Q 006490          571 SMKSK-DLNNVFSRIIWAAEH  590 (643)
Q Consensus       571 Sa~~g-~i~~l~~~l~~~~~~  590 (643)
                      |+..+ +++.+-+.+...+..
T Consensus       317 ~~~~~~~~d~~~~~v~~~a~~  337 (346)
T COG1084         317 SATKGCGLDKLREEVRKTALE  337 (346)
T ss_pred             eeeehhhHHHHHHHHHHHhhc
Confidence            99999 999988888887653

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.48  E-value=6.3e-13  Score=128.97  Aligned_cols=153  Identities=16%  Similarity=0.190  Sum_probs=109.7

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhh-------hHHhhcc
Q 006490           11 TGVRVVVVGDRGTGKSSLIAAAATESV-PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGK-------LNEELKR   82 (643)
Q Consensus        11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-------~~~~~~~   82 (643)
                      ...+|++||.|+||||||+|+|++..- +.+++- ++.+.+++.+..++..++++|+||+.+..+.       .-..++.
T Consensus        62 Gda~v~lVGfPsvGKStLL~~LTnt~seva~y~F-TTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~  140 (365)
T COG1163          62 GDATVALVGFPSVGKSTLLNKLTNTKSEVADYPF-TTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARN  140 (365)
T ss_pred             CCeEEEEEcCCCccHHHHHHHHhCCCccccccCc-eecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeecc
Confidence            347899999999999999999999773 233442 2334478888899999999999997643322       2267899


Q ss_pred             CCEEEEEEECCCccc-HHHHHHHH----------------------------------------HHHHHhc---------
Q 006490           83 ADAVVLTYACNQQST-LSRLSSYW----------------------------------------LPELRRL---------  112 (643)
Q Consensus        83 ad~il~v~d~~~~~s-~~~~~~~~----------------------------------------~~~l~~~---------  112 (643)
                      ||++++|+|+....+ .+.+..++                                        ...++++         
T Consensus       141 ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~I  220 (365)
T COG1163         141 ADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLI  220 (365)
T ss_pred             CCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEE
Confidence            999999999886654 33332211                                        1112221         


Q ss_pred             ----------------CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHHHHHHHHH
Q 006490          113 ----------------EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAV  175 (643)
Q Consensus       113 ----------------~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~  175 (643)
                                      ..-+|.+.|.||+|+...       +....+.+..    .++.+||+.+.|+++|.+.+.+.+
T Consensus       221 r~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~-------e~~~~l~~~~----~~v~isa~~~~nld~L~e~i~~~L  288 (365)
T COG1163         221 REDVTLDDLIDALEGNRVYKPALYVVNKIDLPGL-------EELERLARKP----NSVPISAKKGINLDELKERIWDVL  288 (365)
T ss_pred             ecCCcHHHHHHHHhhcceeeeeEEEEecccccCH-------HHHHHHHhcc----ceEEEecccCCCHHHHHHHHHHhh
Confidence                            114899999999998752       2233333333    589999999999999999999987

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.48  E-value=3.4e-13  Score=117.40  Aligned_cols=105  Identities=24%  Similarity=0.348  Sum_probs=72.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC--CCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchh---------hhHHhhcc
Q 006490           14 RVVVVGDRGTGKSSLIAAAATESV--PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKG---------KLNEELKR   82 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~---------~~~~~~~~   82 (643)
                      +|+|+|.+|||||||+|+|++...  ....++++... ....+...+..+.++||||+.....         .....+..
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~-~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~   79 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDP-VYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISK   79 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSE-EEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCT
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccccccceeee-eeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHH
Confidence            699999999999999999998653  23344433332 2233345677789999999864311         12244588


Q ss_pred             CCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEec
Q 006490           83 ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCK  124 (643)
Q Consensus        83 ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK  124 (643)
                      +|++++|+|+.++.. +.. ..++++++   .++|+++|.||
T Consensus        80 ~d~ii~vv~~~~~~~-~~~-~~~~~~l~---~~~~~i~v~NK  116 (116)
T PF01926_consen   80 SDLIIYVVDASNPIT-EDD-KNILRELK---NKKPIILVLNK  116 (116)
T ss_dssp             ESEEEEEEETTSHSH-HHH-HHHHHHHH---TTSEEEEEEES
T ss_pred             CCEEEEEEECCCCCC-HHH-HHHHHHHh---cCCCEEEEEcC
Confidence            999999999777432 222 24666665   38999999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.47  E-value=1.8e-13  Score=115.93  Aligned_cols=160  Identities=14%  Similarity=0.128  Sum_probs=121.9

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEE
Q 006490           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (643)
Q Consensus        11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~   90 (643)
                      .+.+|.++|--|+||||+.-++--.+.+.+.|+...   ....+..++.++.+||.+|+......|..++.+.|++|+|+
T Consensus        17 ~e~rililgldGaGkttIlyrlqvgevvttkPtigf---nve~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIyVV   93 (182)
T KOG0072|consen   17 REMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGF---NVETVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYVV   93 (182)
T ss_pred             cceEEEEeeccCCCeeEEEEEcccCcccccCCCCCc---CccccccccccceeeEccCcccccHHHHHHhcccceEEEEE
Confidence            678999999999999999999888777666555322   22344558899999999999998999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCcc--chhhhhhhHHHHhhcccceEEEeCcccCCChhHH
Q 006490           91 ACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNA--TSLEEVMGPIMQQFREIETCVECSATTMIQVPDV  167 (643)
Q Consensus        91 d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  167 (643)
                      |.++++........+..++++-. .+..+++++||.|-...-..  ......+..+.++.   ..++++||.+|+|+++.
T Consensus        94 Dssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~---~~Iv~tSA~kg~Gld~~  170 (182)
T KOG0072|consen   94 DSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRI---WQIVKTSAVKGEGLDPA  170 (182)
T ss_pred             eccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhhe---eEEEeeccccccCCcHH
Confidence            99998777666666776775422 36778889999997653211  01222333344333   36899999999999999


Q ss_pred             HHHHHHHHh
Q 006490          168 FYYAQKAVL  176 (643)
Q Consensus       168 ~~~i~~~~~  176 (643)
                      ++|+++.+.
T Consensus       171 ~DWL~~~l~  179 (182)
T KOG0072|consen  171 MDWLQRPLK  179 (182)
T ss_pred             HHHHHHHHh
Confidence            999998764

>CHL00071 tufA elongation factor Tu

Probab=99.47  E-value=4.4e-13  Score=142.55  Aligned_cols=154  Identities=15%  Similarity=0.165  Sum_probs=101.7

Q ss_pred             CCCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCC-----------CCC---CCCCee--eCCcccCCceeEEEEeCCCCC
Q 006490            7 SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEK-----------VPP---VHAPTR--LPPDFYPDRVPVTIIDTSSSL   70 (643)
Q Consensus         7 ~~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~-----------~~~---~~~~~~--~~~~~~~~~~~~~i~Dt~G~~   70 (643)
                      ...++.++|+++|++++|||||+++|++..-...           ...   ..+.+.  ....+..++..+.++||||+.
T Consensus         7 ~~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~   86 (409)
T CHL00071          7 ERKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHA   86 (409)
T ss_pred             cCCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChH
Confidence            3467789999999999999999999997521100           000   011111  112334567789999999988


Q ss_pred             cchhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCc-EEEEEecccCCCCCcc-chhhhhhhHHHHhhc
Q 006490           71 ENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVP-IIVAGCKLDLRGDHNA-TSLEEVMGPIMQQFR  148 (643)
Q Consensus        71 ~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p-vilv~NK~D~~~~~~~-~~~~~~~~~~~~~~~  148 (643)
                      ++.......+..+|++++|+|+.....-+  ....+..+...  ++| +|+|+||+|+...... ......+..+...++
T Consensus        87 ~~~~~~~~~~~~~D~~ilVvda~~g~~~q--t~~~~~~~~~~--g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~  162 (409)
T CHL00071         87 DYVKNMITGAAQMDGAILVVSAADGPMPQ--TKEHILLAKQV--GVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYD  162 (409)
T ss_pred             HHHHHHHHHHHhCCEEEEEEECCCCCcHH--HHHHHHHHHHc--CCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhC
Confidence            87777778889999999999987654322  22355566665  788 7789999999753221 012223444444443


Q ss_pred             c---cceEEEeCcccCCCh
Q 006490          149 E---IETCVECSATTMIQV  164 (643)
Q Consensus       149 ~---~~~~~~~Sa~~~~gi  164 (643)
                      .   ..+++++||.+|.|+
T Consensus       163 ~~~~~~~ii~~Sa~~g~n~  181 (409)
T CHL00071        163 FPGDDIPIVSGSALLALEA  181 (409)
T ss_pred             CCCCcceEEEcchhhcccc
Confidence            2   247899999999754

>PRK10218 GTP-binding protein; Provisional

Probab=99.47  E-value=1.3e-12  Score=143.55  Aligned_cols=160  Identities=13%  Similarity=0.149  Sum_probs=108.8

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcC--CCCCCCC------------CCcccceEEEEEEcCCCcEEEEEEecCCchhhhhh
Q 006490          423 VFRCLLFGPQNAGKSALLNSFLER--PFSENYA------------PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKI  488 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~~~--~~~~~~~------------~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~  488 (643)
                      .-+|+|+|..++|||||+++|+..  .+.....            .+.+..+......+.....++.+|||+|+..+...
T Consensus         5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~   84 (607)
T PRK10218          5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGE   84 (607)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHH
Confidence            458999999999999999999973  2221110            12222333333444445678889999999888766


Q ss_pred             hccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccc--cHHHHHHHHHH-----
Q 006490          489 LSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM--AVQDSARVTQE-----  561 (643)
Q Consensus       489 ~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~--~~~~~~~~~~~-----  561 (643)
                        +..+++.+|++++|+|++++... +...++..+...      ++|+++++||+|+.....  ..+++..+...     
T Consensus        85 --v~~~l~~aDg~ILVVDa~~G~~~-qt~~~l~~a~~~------gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~  155 (607)
T PRK10218         85 --VERVMSMVDSVLLVVDAFDGPMP-QTRFVTKKAFAY------GLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATD  155 (607)
T ss_pred             --HHHHHHhCCEEEEEEecccCccH-HHHHHHHHHHHc------CCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccc
Confidence              67889999999999999986442 334444444443      899999999999865321  12233333222     


Q ss_pred             --hCCCCcEEeeeccC-C----------HHHHHHHHHHHHhCCC
Q 006490          562 --LGIEPPIPVSMKSK-D----------LNNVFSRIIWAAEHPH  592 (643)
Q Consensus       562 --~~~~~~~~vSa~~g-~----------i~~l~~~l~~~~~~~~  592 (643)
                        ..+ |++++||++| +          +..+++.+++.+..|.
T Consensus       156 ~~~~~-PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P~  198 (607)
T PRK10218        156 EQLDF-PIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPD  198 (607)
T ss_pred             cccCC-CEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCCC
Confidence              223 4899999998 6          6788888888776553

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=99.47  E-value=4.5e-15  Score=131.32  Aligned_cols=167  Identities=16%  Similarity=0.171  Sum_probs=131.0

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccC-CceeEEEEeCCCCCcchhhhHHhhccCCEE
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYP-DRVPVTIIDTSSSLENKGKLNEELKRADAV   86 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i   86 (643)
                      ..-+|+.|+|.-|||||+++.+++...|...+..+.+...  .....+. .-+++.+||..|++++..+...++++|++.
T Consensus        23 ~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~  102 (229)
T KOG4423|consen   23 EHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGA  102 (229)
T ss_pred             hhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcce
Confidence            3347999999999999999999999887666555444443  2222222 246788999999999999999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHhc-----CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccC
Q 006490           87 VLTYACNQQSTLSRLSSYWLPELRRL-----EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM  161 (643)
Q Consensus        87 l~v~d~~~~~s~~~~~~~~~~~l~~~-----~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  161 (643)
                      .+|||+++..+++... .|.+.+...     +...|+|+..||||....... .....+..+.++.+ +...+++|++.+
T Consensus       103 ~iVfdvt~s~tfe~~s-kwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~-~~~~~~d~f~keng-f~gwtets~Ken  179 (229)
T KOG4423|consen  103 FIVFDVTRSLTFEPVS-KWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKN-EATRQFDNFKKENG-FEGWTETSAKEN  179 (229)
T ss_pred             EEEEEccccccccHHH-HHHHhccCcccCCCCCcchheeccchhccChHhhh-hhHHHHHHHHhccC-ccceeeeccccc
Confidence            9999999999999988 599888542     346789999999998775433 22344555666555 457999999999


Q ss_pred             CChhHHHHHHHHHHhCCC
Q 006490          162 IQVPDVFYYAQKAVLHPT  179 (643)
Q Consensus       162 ~gi~~l~~~i~~~~~~~~  179 (643)
                      .|++|....+.+.++...
T Consensus       180 kni~Ea~r~lVe~~lvnd  197 (229)
T KOG4423|consen  180 KNIPEAQRELVEKILVND  197 (229)
T ss_pred             cChhHHHHHHHHHHHhhc
Confidence            999999999999876554

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.47  E-value=8.1e-13  Score=128.91  Aligned_cols=159  Identities=22%  Similarity=0.254  Sum_probs=108.6

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCCCCCeeeCCcccCCceeEEEEeCCCCCc----chhhhH----Hhh
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPE-KVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLE----NKGKLN----EEL   80 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----~~~~~~----~~~   80 (643)
                      ++...|+|.|.||||||||++++++.+... .||-++- .-..+.+..+..+++++||||+-+    ..+..+    .++
T Consensus       166 p~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK-~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL  244 (346)
T COG1084         166 PDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTK-GIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILAL  244 (346)
T ss_pred             CCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCcccc-ceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHH
Confidence            455679999999999999999999987433 3443211 114456777888999999999753    111111    233


Q ss_pred             c-cCCEEEEEEECCC--cccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeC
Q 006490           81 K-RADAVVLTYACNQ--QSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECS  157 (643)
Q Consensus        81 ~-~ad~il~v~d~~~--~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  157 (643)
                      + -+++|+|+||.+.  ..+.+... .++..++... +.|+++|.||+|.......   ++.... ...-+. .....++
T Consensus       245 ~hl~~~IlF~~D~Se~cgy~lE~Q~-~L~~eIk~~f-~~p~v~V~nK~D~~~~e~~---~~~~~~-~~~~~~-~~~~~~~  317 (346)
T COG1084         245 RHLAGVILFLFDPSETCGYSLEEQI-SLLEEIKELF-KAPIVVVINKIDIADEEKL---EEIEAS-VLEEGG-EEPLKIS  317 (346)
T ss_pred             HHhcCeEEEEEcCccccCCCHHHHH-HHHHHHHHhc-CCCeEEEEecccccchhHH---HHHHHH-HHhhcc-cccccee
Confidence            3 3689999999874  46777776 4788887655 4899999999998754332   222222 222222 2467899


Q ss_pred             cccCCChhHHHHHHHHHHh
Q 006490          158 ATTMIQVPDVFYYAQKAVL  176 (643)
Q Consensus       158 a~~~~gi~~l~~~i~~~~~  176 (643)
                      +..+.+++.+-..+.....
T Consensus       318 ~~~~~~~d~~~~~v~~~a~  336 (346)
T COG1084         318 ATKGCGLDKLREEVRKTAL  336 (346)
T ss_pred             eeehhhHHHHHHHHHHHhh
Confidence            9999999988877766543

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.47  E-value=9.9e-13  Score=125.81  Aligned_cols=156  Identities=17%  Similarity=0.162  Sum_probs=95.4

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCccc---ceEEEEEEcCCCcEEEEEEecCCchhhhh----hhccHHhh
Q 006490          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGE---QYAVNVVDQPGGNKKTLILQEIPEEGVKK----ILSNKEAL  495 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~---~~~~~~v~~~g~~~~~~i~d~~g~~~~~~----~~~~~~~~  495 (643)
                      ++||+|+|++|||||||+|+|++........+++..   ......+..+ ....+.+||++|......    .. ....+
T Consensus         1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~l~DtpG~~~~~~~~~~~l-~~~~~   78 (197)
T cd04104           1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHP-KFPNVTLWDLPGIGSTAFPPDDYL-EEMKF   78 (197)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecC-CCCCceEEeCCCCCcccCCHHHHH-HHhCc
Confidence            378999999999999999999996654322222111   1111122222 233567899999643211    11 12235


Q ss_pred             ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccc------------cH-H---HHHHHH
Q 006490          496 ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM------------AV-Q---DSARVT  559 (643)
Q Consensus       496 ~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~------------~~-~---~~~~~~  559 (643)
                      .++|++++|.|.  +.+ +....++..+...      +.|+++|+||+|+.....            .. +   .+.+..
T Consensus        79 ~~~d~~l~v~~~--~~~-~~d~~~~~~l~~~------~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~  149 (197)
T cd04104          79 SEYDFFIIISST--RFS-SNDVKLAKAIQCM------GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENL  149 (197)
T ss_pred             cCcCEEEEEeCC--CCC-HHHHHHHHHHHHh------CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHH
Confidence            789999998543  222 3344566666654      789999999999853211            11 1   111122


Q ss_pred             HHh--CCCCcEEeeec--cC-CHHHHHHHHHHHHh
Q 006490          560 QEL--GIEPPIPVSMK--SK-DLNNVFSRIIWAAE  589 (643)
Q Consensus       560 ~~~--~~~~~~~vSa~--~g-~i~~l~~~l~~~~~  589 (643)
                      +..  ..++++.+|+.  .+ |+..+.+.+...+.
T Consensus       150 ~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~  184 (197)
T cd04104         150 QEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLP  184 (197)
T ss_pred             HHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhh
Confidence            221  24478999998  56 89999999988875

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>PRK12739 elongation factor G; Reviewed

Probab=99.47  E-value=2.1e-13  Score=154.31  Aligned_cols=232  Identities=11%  Similarity=0.093  Sum_probs=137.1

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCCCCC----CC-C-----------CCCCee--eCCcccCCceeEEEEeCCCCCcch
Q 006490           12 GVRVVVVGDRGTGKSSLIAAAATESVPEK----VP-P-----------VHAPTR--LPPDFYPDRVPVTIIDTSSSLENK   73 (643)
Q Consensus        12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~~----~~-~-----------~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~   73 (643)
                      -.+|+|+|++|+|||||+++|+...-...    .. +           ..+.+.  ....+..++..++++||||+.++.
T Consensus         8 irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f~   87 (691)
T PRK12739          8 TRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVDFT   87 (691)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHHHH
Confidence            34699999999999999999975321000    00 0           000111  222344578899999999998887


Q ss_pred             hhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhccc--c
Q 006490           74 GKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREI--E  151 (643)
Q Consensus        74 ~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~--~  151 (643)
                      ..+..+++.+|++|+|+|+......+.  ..++..+...  ++|+|+++||+|+....    ....+..+...++..  .
T Consensus        88 ~e~~~al~~~D~~ilVvDa~~g~~~qt--~~i~~~~~~~--~~p~iv~iNK~D~~~~~----~~~~~~~i~~~l~~~~~~  159 (691)
T PRK12739         88 IEVERSLRVLDGAVAVFDAVSGVEPQS--ETVWRQADKY--GVPRIVFVNKMDRIGAD----FFRSVEQIKDRLGANAVP  159 (691)
T ss_pred             HHHHHHHHHhCeEEEEEeCCCCCCHHH--HHHHHHHHHc--CCCEEEEEECCCCCCCC----HHHHHHHHHHHhCCCcee
Confidence            788899999999999999877644333  2466666666  79999999999998642    344556666666531  2


Q ss_pred             eEEEeCcccCCC-hhHHHHHHHHHHhCCC--CCCCcc------ccccchHHHHHHHHhhhhhcCCCCCC-----CCChHH
Q 006490          152 TCVECSATTMIQ-VPDVFYYAQKAVLHPT--APLFDH------DEQTLKPRCVRALKRIFIICDHDMDG-----ALNDAE  217 (643)
Q Consensus       152 ~~~~~Sa~~~~g-i~~l~~~i~~~~~~~~--~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~~-----~l~~~e  217 (643)
                      ..+++|+..+.+ +-++..... ..+...  ...+..      ......+...+.++.+....+...+.     .+..++
T Consensus       160 ~~iPis~~~~f~g~vd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yl~~~~~~~~~  238 (691)
T PRK12739        160 IQLPIGAEDDFKGVIDLIKMKA-IIWDDETLGAKYEEEDIPADLKEKAEEYREKLIEAVAEVDEELMEKYLEGEEITEEE  238 (691)
T ss_pred             EEecccccccceEEEEcchhhh-hhccCCCCCCeeEEcCCCHHHHHHHHHHHHHHHHhhhhcCHHHHHHHhccCCCCHHH
Confidence            357888876642 223332111 111110  000000      00001111222233333222222222     233444


Q ss_pred             HHHHhh----------hhcCCCCCHHHHHHHHHHHHhhccCCcCC
Q 006490          218 LNEFQV----------KCFNAPLQPAEIVGVKRVVQEKQHDGVND  252 (643)
Q Consensus       218 l~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (643)
                      +.....          -.++.++...+++.+++.+..++|+|.+.
T Consensus       239 l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~  283 (691)
T PRK12739        239 IKAAIRKATINMEFFPVLCGSAFKNKGVQPLLDAVVDYLPSPLDV  283 (691)
T ss_pred             HHHHHHHHHHcCCEEEEEeccccCCccHHHHHHHHHHHCCChhhc
Confidence            432222          15778899999999999999999998754

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.46  E-value=1.1e-12  Score=139.38  Aligned_cols=159  Identities=16%  Similarity=0.154  Sum_probs=100.8

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC------CcccceEEE------------EEEc----C--C----CcEE
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAP------TTGEQYAVN------------VVDQ----P--G----GNKK  473 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~------t~~~~~~~~------------~v~~----~--g----~~~~  473 (643)
                      ..++|+++|.+++|||||+++|.+.... .+..      |....+...            .+++    .  |    ....
T Consensus         3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d-~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (406)
T TIGR03680         3 PEVNIGMVGHVDHGKTTLTKALTGVWTD-THSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR   81 (406)
T ss_pred             ceEEEEEEccCCCCHHHHHHHHhCeecc-cCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence            4589999999999999999999764211 1110      111111000            0001    0  0    1356


Q ss_pred             EEEEecCCchhhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc--
Q 006490          474 TLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA--  551 (643)
Q Consensus       474 ~~i~d~~g~~~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~--  551 (643)
                      +.++|++|++.+...  +...+..+|++++|+|++++....+..+.+..+... .    ..|+++|+||+|+......  
T Consensus        82 i~liDtPGh~~f~~~--~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~-g----i~~iIVvvNK~Dl~~~~~~~~  154 (406)
T TIGR03680        82 VSFVDAPGHETLMAT--MLSGAALMDGALLVIAANEPCPQPQTKEHLMALEII-G----IKNIVIVQNKIDLVSKEKALE  154 (406)
T ss_pred             EEEEECCCHHHHHHH--HHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHc-C----CCeEEEEEEccccCCHHHHHH
Confidence            778999999887654  566778899999999999754112223333333222 1    3568999999999864322  


Q ss_pred             -HHHHHHHHHHh---CCCCcEEeeeccC-CHHHHHHHHHHHHh
Q 006490          552 -VQDSARVTQEL---GIEPPIPVSMKSK-DLNNVFSRIIWAAE  589 (643)
Q Consensus       552 -~~~~~~~~~~~---~~~~~~~vSa~~g-~i~~l~~~l~~~~~  589 (643)
                       .+.+..+.+..   ++ +++++||++| |+++++++|...+.
T Consensus       155 ~~~~i~~~l~~~~~~~~-~ii~vSA~~g~gi~~L~e~L~~~l~  196 (406)
T TIGR03680       155 NYEEIKEFVKGTVAENA-PIIPVSALHNANIDALLEAIEKFIP  196 (406)
T ss_pred             HHHHHHhhhhhcccCCC-eEEEEECCCCCChHHHHHHHHHhCC
Confidence             22333333332   23 4899999999 99999999998654

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.46  E-value=4.1e-13  Score=113.35  Aligned_cols=156  Identities=22%  Similarity=0.253  Sum_probs=122.4

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (643)
                      +..+||.++|-.|+|||||+..|.+.+....   |.+.++.++.+... +...+.+||..|+..+...  +..|+.+.|.
T Consensus        15 ~rEirilllGldnAGKTT~LKqL~sED~~hl---tpT~GFn~k~v~~~-g~f~LnvwDiGGqr~IRpy--WsNYyenvd~   88 (185)
T KOG0074|consen   15 RREIRILLLGLDNAGKTTFLKQLKSEDPRHL---TPTNGFNTKKVEYD-GTFHLNVWDIGGQRGIRPY--WSNYYENVDG   88 (185)
T ss_pred             cceEEEEEEecCCCcchhHHHHHccCChhhc---cccCCcceEEEeec-CcEEEEEEecCCccccchh--hhhhhhccce
Confidence            5679999999999999999999998764332   33445677777777 6778889999999998888  8999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCC-------CcEEeeec
Q 006490          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE-------PPIPVSMK  573 (643)
Q Consensus       501 illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-------~~~~vSa~  573 (643)
                      +|+|+|.+|...|+++...+.++.+.....  ..|+.+-+||-|+...    ..+++.+.+++..       .+-++||.
T Consensus        89 lIyVIDS~D~krfeE~~~el~ELleeeKl~--~vpvlIfankQdllta----a~~eeia~klnl~~lrdRswhIq~csal  162 (185)
T KOG0074|consen   89 LIYVIDSTDEKRFEEISEELVELLEEEKLA--EVPVLIFANKQDLLTA----AKVEEIALKLNLAGLRDRSWHIQECSAL  162 (185)
T ss_pred             EEEEEeCCchHhHHHHHHHHHHHhhhhhhh--ccceeehhhhhHHHhh----cchHHHHHhcchhhhhhceEEeeeCccc
Confidence            999999999988888777776666544433  7899999999998763    3344455555433       36789999


Q ss_pred             cC-CHHHHHHHHHHHH
Q 006490          574 SK-DLNNVFSRIIWAA  588 (643)
Q Consensus       574 ~g-~i~~l~~~l~~~~  588 (643)
                      ++ |+.+-.+++....
T Consensus       163 s~eg~~dg~~wv~sn~  178 (185)
T KOG0074|consen  163 SLEGSTDGSDWVQSNP  178 (185)
T ss_pred             cccCccCcchhhhcCC
Confidence            99 9888887776544

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.46  E-value=5e-13  Score=127.29  Aligned_cols=167  Identities=20%  Similarity=0.211  Sum_probs=114.5

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCC--CC-CCCCCeeeCCcccCCceeEEEEeCCCCCc-------chhhhH
Q 006490            8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEK--VP-PVHAPTRLPPDFYPDRVPVTIIDTSSSLE-------NKGKLN   77 (643)
Q Consensus         8 ~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-------~~~~~~   77 (643)
                      .....++|.|+|.+|||||||+|+|......+.  .+ ++..+++....  ..+-.+++|||||.++       +.....
T Consensus        35 ~~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~--~~~~~l~lwDtPG~gdg~~~D~~~r~~~~  112 (296)
T COG3596          35 TEKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLS--YDGENLVLWDTPGLGDGKDKDAEHRQLYR  112 (296)
T ss_pred             cccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhh--ccccceEEecCCCcccchhhhHHHHHHHH
Confidence            356778999999999999999999997653222  22 22222222222  3345699999999986       333455


Q ss_pred             HhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCC--------cc-----chhhhhhhHHH
Q 006490           78 EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH--------NA-----TSLEEVMGPIM  144 (643)
Q Consensus        78 ~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~--------~~-----~~~~~~~~~~~  144 (643)
                      .++.+.|+++++.++.++.--.+.  +++..+...+.++|+++++|.+|....-        ..     ...++..+.+.
T Consensus       113 d~l~~~DLvL~l~~~~draL~~d~--~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~  190 (296)
T COG3596         113 DYLPKLDLVLWLIKADDRALGTDE--DFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALG  190 (296)
T ss_pred             HHhhhccEEEEeccCCCccccCCH--HHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHH
Confidence            778899999999998887533333  3555555545579999999999976431        00     01233334444


Q ss_pred             HhhcccceEEEeCcccCCChhHHHHHHHHHHhCC
Q 006490          145 QQFREIETCVECSATTMIQVPDVFYYAQKAVLHP  178 (643)
Q Consensus       145 ~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~~~  178 (643)
                      +.+....+++..|...+-|++.+...+++.+...
T Consensus       191 ~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~e  224 (296)
T COG3596         191 RLFQEVKPVVAVSGRLPWGLKELVRALITALPVE  224 (296)
T ss_pred             HHHhhcCCeEEeccccCccHHHHHHHHHHhCccc
Confidence            4455566788888899999999999999987643

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.46  E-value=5.6e-13  Score=141.27  Aligned_cols=150  Identities=15%  Similarity=0.158  Sum_probs=98.1

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHhcCC-------C----CCC------CCCCCCCeeeCCcccCCceeEEEEeCCCCC
Q 006490            8 SSRTGVRVVVVGDRGTGKSSLIAAAATES-------V----PEK------VPPVHAPTRLPPDFYPDRVPVTIIDTSSSL   70 (643)
Q Consensus         8 ~~~~~~kI~lvG~~~vGKSsL~n~l~~~~-------~----~~~------~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~   70 (643)
                      ..+++++|+++|+.++|||||+++|++..       +    ..+      ..+.+ .......+..++..+.+|||||++
T Consensus         8 ~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~T-i~~~~~~~~~~~~~~~liDtpGh~   86 (394)
T TIGR00485         8 RTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGIT-INTAHVEYETENRHYAHVDCPGHA   86 (394)
T ss_pred             CCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcc-eeeEEEEEcCCCEEEEEEECCchH
Confidence            46778999999999999999999998431       0    000      11111 111223344567789999999998


Q ss_pred             cchhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEE-EEEecccCCCCCccc-hhhhhhhHHHHhhc
Q 006490           71 ENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPII-VAGCKLDLRGDHNAT-SLEEVMGPIMQQFR  148 (643)
Q Consensus        71 ~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvi-lv~NK~D~~~~~~~~-~~~~~~~~~~~~~~  148 (643)
                      +|.......+..+|++++|+|++.....+..  +.+..+...  ++|.+ +|+||+|+.+..... ...+.++.+...++
T Consensus        87 ~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~--e~l~~~~~~--gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~  162 (394)
T TIGR00485        87 DYVKNMITGAAQMDGAILVVSATDGPMPQTR--EHILLARQV--GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYD  162 (394)
T ss_pred             HHHHHHHHHHhhCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcC
Confidence            8876666777889999999998874333322  345555555  67765 689999987532210 11233455555554


Q ss_pred             c---cceEEEeCcccCC
Q 006490          149 E---IETCVECSATTMI  162 (643)
Q Consensus       149 ~---~~~~~~~Sa~~~~  162 (643)
                      .   ..+++++||.+|.
T Consensus       163 ~~~~~~~ii~vSa~~g~  179 (394)
T TIGR00485       163 FPGDDTPIIRGSALKAL  179 (394)
T ss_pred             CCccCccEEECcccccc
Confidence            2   1478999999885

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.46  E-value=7.9e-13  Score=141.83  Aligned_cols=151  Identities=16%  Similarity=0.127  Sum_probs=98.9

Q ss_pred             cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCC------------------------CC-------CCcccceEEEEEEcC
Q 006490          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSEN------------------------YA-------PTTGEQYAVNVVDQP  468 (643)
Q Consensus       420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~------------------------~~-------~t~~~~~~~~~v~~~  468 (643)
                      .+..++|+++|..++|||||+++|+...-...                        .+       ..++.+.....+.. 
T Consensus         4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~-   82 (426)
T TIGR00483         4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFET-   82 (426)
T ss_pred             CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEcc-
Confidence            34568999999999999999999985321110                        00       12222233333443 


Q ss_pred             CCcEEEEEEecCCchhhhhhhccHHhhccCCEEEEEEeCCChhhHHH--HHHHHHHHHHhcCCCCCCCcEEEEEeCCCCC
Q 006490          469 GGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKR--TKELLVEVARLGEDSGYGVPCLLIASKDDLK  546 (643)
Q Consensus       469 g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~--~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~  546 (643)
                       ....+.+||++|++.+...  ....+..+|++++|+|++++.++..  ...++. +.....    ..|+++|+||+|+.
T Consensus        83 -~~~~i~iiDtpGh~~f~~~--~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~-~~~~~~----~~~iIVviNK~Dl~  154 (426)
T TIGR00483        83 -DKYEVTIVDCPGHRDFIKN--MITGASQADAAVLVVAVGDGEFEVQPQTREHAF-LARTLG----INQLIVAINKMDSV  154 (426)
T ss_pred             -CCeEEEEEECCCHHHHHHH--HHhhhhhCCEEEEEEECCCCCcccCCchHHHHH-HHHHcC----CCeEEEEEEChhcc
Confidence             3467789999998876543  4556789999999999998854311  111111 222211    35799999999997


Q ss_pred             Cc-cc----cHHHHHHHHHHhCC----CCcEEeeeccC-CHHH
Q 006490          547 PY-TM----AVQDSARVTQELGI----EPPIPVSMKSK-DLNN  579 (643)
Q Consensus       547 ~~-~~----~~~~~~~~~~~~~~----~~~~~vSa~~g-~i~~  579 (643)
                      .. ..    ..+++..+++..++    .+++++||++| |+.+
T Consensus       155 ~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~  197 (426)
T TIGR00483       155 NYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK  197 (426)
T ss_pred             CccHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence            42 11    14556667777775    25899999999 9986

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>cd01859 MJ1464 MJ1464

Probab=99.46  E-value=2.3e-12  Score=118.57  Aligned_cols=90  Identities=14%  Similarity=0.026  Sum_probs=59.2

Q ss_pred             hhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceE
Q 006490           74 GKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETC  153 (643)
Q Consensus        74 ~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (643)
                      .+....++++|++|+|+|++++......  .+...+...  ++|+++|+||+|+.....   . .....+....+  .++
T Consensus         4 ~~~~~i~~~aD~vl~V~D~~~~~~~~~~--~l~~~~~~~--~~p~iiv~NK~Dl~~~~~---~-~~~~~~~~~~~--~~~   73 (156)
T cd01859           4 RLVRRIIKESDVVLEVLDARDPELTRSR--KLERYVLEL--GKKLLIVLNKADLVPKEV---L-EKWKSIKESEG--IPV   73 (156)
T ss_pred             HHHHHHHhhCCEEEEEeeCCCCcccCCH--HHHHHHHhC--CCcEEEEEEhHHhCCHHH---H-HHHHHHHHhCC--CcE
Confidence            4556778889999999999876433321  244444433  789999999999853211   1 11112222222  368


Q ss_pred             EEeCcccCCChhHHHHHHHH
Q 006490          154 VECSATTMIQVPDVFYYAQK  173 (643)
Q Consensus       154 ~~~Sa~~~~gi~~l~~~i~~  173 (643)
                      +++||+++.|++++++.+.+
T Consensus        74 ~~iSa~~~~gi~~L~~~l~~   93 (156)
T cd01859          74 VYVSAKERLGTKILRRTIKE   93 (156)
T ss_pred             EEEEccccccHHHHHHHHHH
Confidence            99999999999998876543

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.45  E-value=1.3e-12  Score=143.80  Aligned_cols=158  Identities=17%  Similarity=0.228  Sum_probs=108.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC--CCCCCC---------CC---CcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhc
Q 006490          425 RCLLFGPQNAGKSALLNSFLER--PFSENY---------AP---TTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILS  490 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~--~~~~~~---------~~---t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~  490 (643)
                      +|+|+|..++|||||+++|+..  .+....         .+   ..+.........+.....++.+|||+|+..+...  
T Consensus         3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~e--   80 (594)
T TIGR01394         3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGE--   80 (594)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHH--
Confidence            6999999999999999999963  221111         00   1111222222222224577889999999888765  


Q ss_pred             cHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccc--cHHHHHHHHHH-------
Q 006490          491 NKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM--AVQDSARVTQE-------  561 (643)
Q Consensus       491 ~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~--~~~~~~~~~~~-------  561 (643)
                      ...+++.+|++++|+|++++.. .+...++..+...      ++|+++|+||+|+.....  ...+...+...       
T Consensus        81 v~~~l~~aD~alLVVDa~~G~~-~qT~~~l~~a~~~------~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~  153 (594)
T TIGR01394        81 VERVLGMVDGVLLLVDASEGPM-PQTRFVLKKALEL------GLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQ  153 (594)
T ss_pred             HHHHHHhCCEEEEEEeCCCCCc-HHHHHHHHHHHHC------CCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhcccccc
Confidence            6788999999999999987643 4456666666554      899999999999865321  22333333322       


Q ss_pred             hCCCCcEEeeeccC-----------CHHHHHHHHHHHHhCCC
Q 006490          562 LGIEPPIPVSMKSK-----------DLNNVFSRIIWAAEHPH  592 (643)
Q Consensus       562 ~~~~~~~~vSa~~g-----------~i~~l~~~l~~~~~~~~  592 (643)
                      ..+ |++++||++|           |+..+|+.+.+.+..|.
T Consensus       154 l~~-pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~  194 (594)
T TIGR01394       154 LDF-PIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPK  194 (594)
T ss_pred             ccC-cEEechhhcCcccccCcccccCHHHHHHHHHHhCCCCC
Confidence            233 4899999998           48899999998876553

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>PRK13351 elongation factor G; Reviewed

Probab=99.45  E-value=2.3e-13  Score=154.53  Aligned_cols=234  Identities=13%  Similarity=0.095  Sum_probs=135.5

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-----CC-C----------CCe--eeCCcccCCceeEEEEeCCCCCcc
Q 006490           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVP-----PV-H----------APT--RLPPDFYPDRVPVTIIDTSSSLEN   72 (643)
Q Consensus        11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~-----~~-~----------~~~--~~~~~~~~~~~~~~i~Dt~G~~~~   72 (643)
                      +..+|+|+|+.|+|||||+++|+...-.....     +. .          +.+  .....+.+.++.+++|||||+.++
T Consensus         7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df   86 (687)
T PRK13351          7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDF   86 (687)
T ss_pred             cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHH
Confidence            34679999999999999999998643110000     00 0          000  011234456889999999999988


Q ss_pred             hhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccce
Q 006490           73 KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIET  152 (643)
Q Consensus        73 ~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (643)
                      ...+..+++.+|++++|+|+++........  .+..+...  ++|+++|+||+|+...    .....++.+...++....
T Consensus        87 ~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~--~~~~~~~~--~~p~iiviNK~D~~~~----~~~~~~~~i~~~l~~~~~  158 (687)
T PRK13351         87 TGEVERSLRVLDGAVVVFDAVTGVQPQTET--VWRQADRY--GIPRLIFINKMDRVGA----DLFKVLEDIEERFGKRPL  158 (687)
T ss_pred             HHHHHHHHHhCCEEEEEEeCCCCCCHHHHH--HHHHHHhc--CCCEEEEEECCCCCCC----CHHHHHHHHHHHHCCCeE
Confidence            888899999999999999998877665543  44555555  7999999999998764    345666677777764322


Q ss_pred             EEEeCcccCCChhHHHHHHHHHH-hCCCC---CCCcc-c-cccch----HHHHHHHHhhhhhcCCC-----CCCCCChHH
Q 006490          153 CVECSATTMIQVPDVFYYAQKAV-LHPTA---PLFDH-D-EQTLK----PRCVRALKRIFIICDHD-----MDGALNDAE  217 (643)
Q Consensus       153 ~~~~Sa~~~~gi~~l~~~i~~~~-~~~~~---~~~~~-~-~~~~~----~~~~~~l~~~~~~~~~~-----~~~~l~~~e  217 (643)
                      .+......+.++..+.+.+.... .....   ..... . .....    ....+.++.+....+..     .+..++.++
T Consensus       159 ~~~~P~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~lle~~l~~~~l~~~~  238 (687)
T PRK13351        159 PLQLPIGSEDGFEGVVDLITEPELHFSEGDGGSTVEEGPIPEELLEEVEEAREKLIEALAEFDDELLELYLEGEELSAEQ  238 (687)
T ss_pred             EEEeccccCCceEEEEECccceEEecccCCCCCceEEccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHHH
Confidence            23333333332222221111110 00000   00000 0 00001    11111122211111111     133455566


Q ss_pred             HHHHhhh----------hcCCCCCHHHHHHHHHHHHhhccCCcCC
Q 006490          218 LNEFQVK----------CFNAPLQPAEIVGVKRVVQEKQHDGVND  252 (643)
Q Consensus       218 l~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (643)
                      +......          +++.+....+++.+++.+..+.|+|.+.
T Consensus       239 l~~~~~~~~~~~~~~PV~~gSA~~~~Gv~~LLd~I~~~lPsP~~~  283 (687)
T PRK13351        239 LRAPLREGTRSGHLVPVLFGSALKNIGIEPLLDAVVDYLPSPLEV  283 (687)
T ss_pred             HHHHHHHHHHhCCEEEEEecccCcCccHHHHHHHHHHHCCChhhc
Confidence            5433332          5778899999999999999999998643

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.45  E-value=3.3e-12  Score=129.75  Aligned_cols=80  Identities=28%  Similarity=0.384  Sum_probs=54.4

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCC-CCCCCCCCCeeeCCc----------------------cc-CCceeEEEEeCCCCC
Q 006490           15 VVVVGDRGTGKSSLIAAAATESVP-EKVPPVHAPTRLPPD----------------------FY-PDRVPVTIIDTSSSL   70 (643)
Q Consensus        15 I~lvG~~~vGKSsL~n~l~~~~~~-~~~~~~~~~~~~~~~----------------------~~-~~~~~~~i~Dt~G~~   70 (643)
                      |+|+|.||||||||+|+|++.... .++|.++-.......                      .+ ...+.+.+|||||+.
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv   80 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV   80 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence            589999999999999999998742 334432211111000                      11 134789999999983


Q ss_pred             ----cchhhhHH---hhccCCEEEEEEECCC
Q 006490           71 ----ENKGKLNE---ELKRADAVVLTYACNQ   94 (643)
Q Consensus        71 ----~~~~~~~~---~~~~ad~il~v~d~~~   94 (643)
                          ++..+...   .++.||++++|+|+..
T Consensus        81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~  111 (318)
T cd01899          81 PGAHEGKGLGNKFLDDLRDADALIHVVDASG  111 (318)
T ss_pred             CCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence                34444344   5999999999999963

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>TIGR00503 prfC peptide chain release factor 3

Probab=99.45  E-value=8.2e-13  Score=143.45  Aligned_cols=131  Identities=13%  Similarity=0.122  Sum_probs=88.3

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC-C---------CCC------------eeeCCcccCCceeEEEEeCC
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPP-V---------HAP------------TRLPPDFYPDRVPVTIIDTS   67 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~-~---------~~~------------~~~~~~~~~~~~~~~i~Dt~   67 (643)
                      .+..+|+|+|++|+|||||+++|+...-.....+ +         ...            ......+..+++.+++||||
T Consensus         9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP   88 (527)
T TIGR00503         9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP   88 (527)
T ss_pred             ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence            3445799999999999999999864321111010 0         000            00112345678999999999


Q ss_pred             CCCcchhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhh
Q 006490           68 SSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF  147 (643)
Q Consensus        68 G~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~  147 (643)
                      |+.++......+++.+|++|+|+|+++..  +.....+++..+..  ++|+++++||+|+....    ..+.+..+...+
T Consensus        89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv--~~~t~~l~~~~~~~--~~PiivviNKiD~~~~~----~~~ll~~i~~~l  160 (527)
T TIGR00503        89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGV--ETRTRKLMEVTRLR--DTPIFTFMNKLDRDIRD----PLELLDEVENEL  160 (527)
T ss_pred             ChhhHHHHHHHHHHhCCEEEEEEECCCCC--CHHHHHHHHHHHhc--CCCEEEEEECccccCCC----HHHHHHHHHHHh
Confidence            99888777788999999999999987752  22233466666555  79999999999986532    333444444554


Q ss_pred             c
Q 006490          148 R  148 (643)
Q Consensus       148 ~  148 (643)
                      +
T Consensus       161 ~  161 (527)
T TIGR00503       161 K  161 (527)
T ss_pred             C
Confidence            4

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.44  E-value=1.6e-12  Score=127.44  Aligned_cols=165  Identities=18%  Similarity=0.106  Sum_probs=110.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhh-----hhccHHhhccCC
Q 006490          425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK-----ILSNKEALASCD  499 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~-----~~~~~~~~~~ad  499 (643)
                      -|-+||-||+|||||++++..-+-.+...|-|+..-..=++.+. ....+++-|.+|--+=.+     -.+-.+.+.+|.
T Consensus       161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~-~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~  239 (369)
T COG0536         161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVD-GGESFVVADIPGLIEGASEGVGLGLRFLRHIERTR  239 (369)
T ss_pred             ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEec-CCCcEEEecCcccccccccCCCccHHHHHHHHhhh
Confidence            47899999999999999999866555444533322222233333 455667778777211100     122467889999


Q ss_pred             EEEEEEeCCChh---hHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcc-ccHHHHHHHHHHhCCCCcEEeeeccC
Q 006490          500 VTIFVYDSSDEY---SWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK  575 (643)
Q Consensus       500 ~illv~D~s~~~---s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSa~~g  575 (643)
                      ++++|+|++..+   -.++...+..++..+..... ++|.++|+||+|+.... ......+.+.+..++...+++||.++
T Consensus       240 vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~-~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~  318 (369)
T COG0536         240 VLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLA-EKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTR  318 (369)
T ss_pred             eeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhc-cCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhcc
Confidence            999999998543   24555555666666543221 79999999999965543 33455566666667664444999999


Q ss_pred             -CHHHHHHHHHHHHhCC
Q 006490          576 -DLNNVFSRIIWAAEHP  591 (643)
Q Consensus       576 -~i~~l~~~l~~~~~~~  591 (643)
                       |++++...+.+.+...
T Consensus       319 ~g~~~L~~~~~~~l~~~  335 (369)
T COG0536         319 EGLDELLRALAELLEET  335 (369)
T ss_pred             cCHHHHHHHHHHHHHHh
Confidence             9999999998877543

>PRK12289 GTPase RsgA; Reviewed

Probab=99.43  E-value=1.8e-12  Score=133.23  Aligned_cols=86  Identities=19%  Similarity=0.147  Sum_probs=58.7

Q ss_pred             hhHHhhccCCEEEEEEECCCcc-cHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceE
Q 006490           75 KLNEELKRADAVVLTYACNQQS-TLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETC  153 (643)
Q Consensus        75 ~~~~~~~~ad~il~v~d~~~~~-s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (643)
                      +...++.++|.+++|+|+.++. ....+. +|+..+...  ++|++||+||+|+.....   . +........++  ..+
T Consensus        82 L~R~~~aNvD~vLlV~d~~~p~~~~~~Ld-R~L~~a~~~--~ip~ILVlNK~DLv~~~~---~-~~~~~~~~~~g--~~v  152 (352)
T PRK12289         82 LDRPPVANADQILLVFALAEPPLDPWQLS-RFLVKAEST--GLEIVLCLNKADLVSPTE---Q-QQWQDRLQQWG--YQP  152 (352)
T ss_pred             eechhhhcCCEEEEEEECCCCCCCHHHHH-HHHHHHHHC--CCCEEEEEEchhcCChHH---H-HHHHHHHHhcC--CeE
Confidence            3445688999999999998775 343444 566665444  899999999999964311   1 11111122333  368


Q ss_pred             EEeCcccCCChhHHHH
Q 006490          154 VECSATTMIQVPDVFY  169 (643)
Q Consensus       154 ~~~Sa~~~~gi~~l~~  169 (643)
                      +.+||+++.|+++|++
T Consensus       153 ~~iSA~tg~GI~eL~~  168 (352)
T PRK12289        153 LFISVETGIGLEALLE  168 (352)
T ss_pred             EEEEcCCCCCHHHHhh
Confidence            9999999999987765

>cd01855 YqeH YqeH

Probab=99.43  E-value=2.1e-12  Score=123.04  Aligned_cols=93  Identities=17%  Similarity=0.128  Sum_probs=60.5

Q ss_pred             chhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHH-----Hh
Q 006490           72 NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIM-----QQ  146 (643)
Q Consensus        72 ~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~-----~~  146 (643)
                      +...+..+++++|++++|+|++++...      |...+.....++|+++|+||+|+......   .+....+.     ..
T Consensus        24 ~~~~l~~~~~~ad~il~VvD~~~~~~~------~~~~l~~~~~~~~~ilV~NK~Dl~~~~~~---~~~~~~~~~~~~~~~   94 (190)
T cd01855          24 ILNLLSSISPKKALVVHVVDIFDFPGS------LIPRLRLFGGNNPVILVGNKIDLLPKDKN---LVRIKNWLRAKAAAG   94 (190)
T ss_pred             HHHHHHhcccCCcEEEEEEECccCCCc------cchhHHHhcCCCcEEEEEEchhcCCCCCC---HHHHHHHHHHHHHhh
Confidence            356777899999999999999876421      22222222347899999999998653221   11122222     11


Q ss_pred             hc-ccceEEEeCcccCCChhHHHHHHHH
Q 006490          147 FR-EIETCVECSATTMIQVPDVFYYAQK  173 (643)
Q Consensus       147 ~~-~~~~~~~~Sa~~~~gi~~l~~~i~~  173 (643)
                      .+ ....++++||++|.|++++++.+.+
T Consensus        95 ~~~~~~~i~~vSA~~~~gi~eL~~~l~~  122 (190)
T cd01855          95 LGLKPKDVILISAKKGWGVEELINAIKK  122 (190)
T ss_pred             cCCCcccEEEEECCCCCCHHHHHHHHHH
Confidence            11 1125899999999999998876543

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.43  E-value=1.4e-12  Score=127.71  Aligned_cols=160  Identities=18%  Similarity=0.145  Sum_probs=108.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhh-------HHhhccCCE
Q 006490           14 RVVVVGDRGTGKSSLIAAAATESVP-EKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKL-------NEELKRADA   85 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-------~~~~~~ad~   85 (643)
                      -|.+||-||+|||||++.+...+.. .+||-|+-...+.+.-......|.+-|.||+.+..+.-       -..++++-+
T Consensus       161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~v  240 (369)
T COG0536         161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTRV  240 (369)
T ss_pred             ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhhhe
Confidence            4679999999999999999987743 34554332222222222456679999999987543321       156788999


Q ss_pred             EEEEEECCCccc---HHHHHHHHHHHHHhcC---CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcc
Q 006490           86 VVLTYACNQQST---LSRLSSYWLPELRRLE---IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT  159 (643)
Q Consensus        86 il~v~d~~~~~s---~~~~~~~~~~~l~~~~---~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  159 (643)
                      ++.|+|++..+.   .+++. .+..++..+.   .++|.++|+||+|+..+.+.  .+.....+.+..+....++ +||.
T Consensus       241 L~hviD~s~~~~~dp~~~~~-~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~--~~~~~~~l~~~~~~~~~~~-ISa~  316 (369)
T COG0536         241 LLHVIDLSPIDGRDPIEDYQ-TIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEE--LEELKKALAEALGWEVFYL-ISAL  316 (369)
T ss_pred             eEEEEecCcccCCCHHHHHH-HHHHHHHHhhHHhccCceEEEEeccCCCcCHHH--HHHHHHHHHHhcCCCccee-eehh
Confidence            999999986653   55555 3777777664   48999999999996644322  2333344444444322233 9999


Q ss_pred             cCCChhHHHHHHHHHHhC
Q 006490          160 TMIQVPDVFYYAQKAVLH  177 (643)
Q Consensus       160 ~~~gi~~l~~~i~~~~~~  177 (643)
                      ++.|++++...+.+.+..
T Consensus       317 t~~g~~~L~~~~~~~l~~  334 (369)
T COG0536         317 TREGLDELLRALAELLEE  334 (369)
T ss_pred             cccCHHHHHHHHHHHHHH
Confidence            999999999988776543

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.42  E-value=1.2e-12  Score=127.50  Aligned_cols=145  Identities=16%  Similarity=0.112  Sum_probs=89.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCC------------------------C--CC-----CCcccceEEEEEEcCCCcEE
Q 006490          425 RCLLFGPQNAGKSALLNSFLERPFSE------------------------N--YA-----PTTGEQYAVNVVDQPGGNKK  473 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~~~~~------------------------~--~~-----~t~~~~~~~~~v~~~g~~~~  473 (643)
                      +|+++|.+++|||||+.+|+...-..                        .  +.     ..++.+.....+.+  ...+
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~--~~~~   78 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFET--EKYR   78 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEee--CCeE
Confidence            48999999999999999997421100                        0  00     01111222233333  3467


Q ss_pred             EEEEecCCchhhhhhhccHHhhccCCEEEEEEeCCChhh---H---HHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC
Q 006490          474 TLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYS---W---KRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP  547 (643)
Q Consensus       474 ~~i~d~~g~~~~~~~~~~~~~~~~ad~illv~D~s~~~s---~---~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~  547 (643)
                      +.++|++|+..+...  ....+..+|++++|+|++++..   |   ......+...... .    ..|+++|+||+|+..
T Consensus        79 i~liDtpG~~~~~~~--~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~iiivvNK~Dl~~  151 (219)
T cd01883          79 FTILDAPGHRDFVPN--MITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTL-G----VKQLIVAVNKMDDVT  151 (219)
T ss_pred             EEEEECCChHHHHHH--HHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHc-C----CCeEEEEEEcccccc
Confidence            788999998766543  5667788999999999998521   0   1122222222222 1    368999999999973


Q ss_pred             c---cc----cHHHHHHHHHHhCC----CCcEEeeeccC-CHH
Q 006490          548 Y---TM----AVQDSARVTQELGI----EPPIPVSMKSK-DLN  578 (643)
Q Consensus       548 ~---~~----~~~~~~~~~~~~~~----~~~~~vSa~~g-~i~  578 (643)
                      .   ..    ..+.++.+.+.+++    .++++|||++| |++
T Consensus       152 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         152 VNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             ccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence            1   11    12334444556655    35899999999 986

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.42  E-value=3.4e-12  Score=135.48  Aligned_cols=161  Identities=18%  Similarity=0.160  Sum_probs=99.8

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-----CCcccceEEEE------------EEcC------C----CcEE
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-----PTTGEQYAVNV------------VDQP------G----GNKK  473 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~-----~t~~~~~~~~~------------v~~~------g----~~~~  473 (643)
                      +..++|+++|..++|||||+.+|.+........     .|....+....            ..+.      +    ....
T Consensus         7 ~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (411)
T PRK04000          7 QPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRR   86 (411)
T ss_pred             CCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccE
Confidence            456899999999999999999997642111110     11111110000            0000      1    1256


Q ss_pred             EEEEecCCchhhhhhhccHHhhccCCEEEEEEeCCChh-hHHHHHHHHHHHHHhcCCCCCC-CcEEEEEeCCCCCCcccc
Q 006490          474 TLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEY-SWKRTKELLVEVARLGEDSGYG-VPCLLIASKDDLKPYTMA  551 (643)
Q Consensus       474 ~~i~d~~g~~~~~~~~~~~~~~~~ad~illv~D~s~~~-s~~~~~~~~~~i~~~~~~~~~~-~pvilv~NK~Dl~~~~~~  551 (643)
                      +.+||++|++.+..-  .......+|++++|+|++++. .-+ ....+..+...      + .|+++|+||+|+.+....
T Consensus        87 i~liDtPG~~~f~~~--~~~~~~~~D~~llVVDa~~~~~~~~-t~~~l~~l~~~------~i~~iiVVlNK~Dl~~~~~~  157 (411)
T PRK04000         87 VSFVDAPGHETLMAT--MLSGAALMDGAILVIAANEPCPQPQ-TKEHLMALDII------GIKNIVIVQNKIDLVSKERA  157 (411)
T ss_pred             EEEEECCCHHHHHHH--HHHHHhhCCEEEEEEECCCCCCChh-HHHHHHHHHHc------CCCcEEEEEEeeccccchhH
Confidence            788999999877543  455667789999999999753 212 22222222222      3 468999999999764332


Q ss_pred             H---HHHHHHHHHhC--CCCcEEeeeccC-CHHHHHHHHHHHHhC
Q 006490          552 V---QDSARVTQELG--IEPPIPVSMKSK-DLNNVFSRIIWAAEH  590 (643)
Q Consensus       552 ~---~~~~~~~~~~~--~~~~~~vSa~~g-~i~~l~~~l~~~~~~  590 (643)
                      .   +....+.+...  ..+++++||++| |++++++.|...+..
T Consensus       158 ~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~  202 (411)
T PRK04000        158 LENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPT  202 (411)
T ss_pred             HHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence            2   23333333221  235899999999 999999999887643

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.42  E-value=4e-12  Score=134.74  Aligned_cols=147  Identities=18%  Similarity=0.175  Sum_probs=95.9

Q ss_pred             cCceEEEEEEcCCCCCHHHHHHHHhcC------CCCCCCC-----C---CcccceEEEEEEcCCCcEEEEEEecCCchhh
Q 006490          420 ERNVFRCLLFGPQNAGKSALLNSFLER------PFSENYA-----P---TTGEQYAVNVVDQPGGNKKTLILQEIPEEGV  485 (643)
Q Consensus       420 ~~~~~ki~ivG~~nvGKSSLln~l~~~------~~~~~~~-----~---t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~  485 (643)
                      .+..++|+++|..++|||||+++|++.      .....+.     +   ..+.......+........+.++||+|++.+
T Consensus         9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f   88 (394)
T TIGR00485         9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY   88 (394)
T ss_pred             CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH
Confidence            345689999999999999999999843      1111000     0   0111111222333334567789999999877


Q ss_pred             hhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEE-EEEeCCCCCCcccc----HHHHHHHHH
Q 006490          486 KKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCL-LIASKDDLKPYTMA----VQDSARVTQ  560 (643)
Q Consensus       486 ~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvi-lv~NK~Dl~~~~~~----~~~~~~~~~  560 (643)
                      ...  ....+..+|++++|+|++++.. .+..+.+..+...      ++|.+ +|+||+|+.+....    .++++.+.+
T Consensus        89 ~~~--~~~~~~~~D~~ilVvda~~g~~-~qt~e~l~~~~~~------gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~  159 (394)
T TIGR00485        89 VKN--MITGAAQMDGAILVVSATDGPM-PQTREHILLARQV------GVPYIVVFLNKCDMVDDEELLELVEMEVRELLS  159 (394)
T ss_pred             HHH--HHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc------CCCEEEEEEEecccCCHHHHHHHHHHHHHHHHH
Confidence            553  4566788999999999998543 2233444444433      67765 68999999764322    335666777


Q ss_pred             HhCC----CCcEEeeeccC
Q 006490          561 ELGI----EPPIPVSMKSK  575 (643)
Q Consensus       561 ~~~~----~~~~~vSa~~g  575 (643)
                      .+++    .+++++||++|
T Consensus       160 ~~~~~~~~~~ii~vSa~~g  178 (394)
T TIGR00485       160 EYDFPGDDTPIIRGSALKA  178 (394)
T ss_pred             hcCCCccCccEEECccccc
Confidence            7765    36899999986

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PRK00049 elongation factor Tu; Reviewed

Probab=99.42  E-value=1.5e-12  Score=137.67  Aligned_cols=152  Identities=16%  Similarity=0.186  Sum_probs=98.3

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHhcCCCC---C--------CCCC---CCCCee--eCCcccCCceeEEEEeCCCCCc
Q 006490            8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVP---E--------KVPP---VHAPTR--LPPDFYPDRVPVTIIDTSSSLE   71 (643)
Q Consensus         8 ~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~---~--------~~~~---~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~   71 (643)
                      ..++.++|+++|+.++|||||+++|++....   .        +...   ..+.+.  ....+..++..+.++||||+.+
T Consensus         8 ~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~   87 (396)
T PRK00049          8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHAD   87 (396)
T ss_pred             CCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHH
Confidence            3577899999999999999999999873110   0        0000   011111  2223344677899999999987


Q ss_pred             chhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEE-EEEecccCCCCCccc-hhhhhhhHHHHhhcc
Q 006490           72 NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPII-VAGCKLDLRGDHNAT-SLEEVMGPIMQQFRE  149 (643)
Q Consensus        72 ~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvi-lv~NK~D~~~~~~~~-~~~~~~~~~~~~~~~  149 (643)
                      +.......+..+|++++|+|+.......  ...++..+...  ++|++ +++||+|+....... .....+..+...++.
T Consensus        88 f~~~~~~~~~~aD~~llVVDa~~g~~~q--t~~~~~~~~~~--g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~  163 (396)
T PRK00049         88 YVKNMITGAAQMDGAILVVSAADGPMPQ--TREHILLARQV--GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDF  163 (396)
T ss_pred             HHHHHHhhhccCCEEEEEEECCCCCchH--HHHHHHHHHHc--CCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCC
Confidence            7777778889999999999987653332  22456666666  78976 589999987422110 012223333333321


Q ss_pred             ---cceEEEeCcccCCC
Q 006490          150 ---IETCVECSATTMIQ  163 (643)
Q Consensus       150 ---~~~~~~~Sa~~~~g  163 (643)
                         ..+++++||.+|.+
T Consensus       164 ~~~~~~iv~iSa~~g~~  180 (396)
T PRK00049        164 PGDDTPIIRGSALKALE  180 (396)
T ss_pred             CccCCcEEEeecccccC
Confidence               24689999998753

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.42  E-value=2e-12  Score=139.35  Aligned_cols=156  Identities=17%  Similarity=0.072  Sum_probs=99.1

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCC------------CCCCC-------------------Ce--eeCCcc
Q 006490            8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKV------------PPVHA-------------------PT--RLPPDF   54 (643)
Q Consensus         8 ~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~------------~~~~~-------------------~~--~~~~~~   54 (643)
                      ..+..++|+++|++++|||||+++|+...-....            .+...                   .+  .....+
T Consensus        23 ~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~  102 (474)
T PRK05124         23 QHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF  102 (474)
T ss_pred             cccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEe
Confidence            3577799999999999999999999865411110            11110                   00  011123


Q ss_pred             cCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccc
Q 006490           55 YPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNAT  134 (643)
Q Consensus        55 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~  134 (643)
                      ..++..+.|+||||++.+.......+..+|++|+|+|++........  ..+..+.... ..|+|+|+||+|+...... 
T Consensus       103 ~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~--~~~~l~~~lg-~~~iIvvvNKiD~~~~~~~-  178 (474)
T PRK05124        103 STEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTR--RHSFIATLLG-IKHLVVAVNKMDLVDYSEE-  178 (474)
T ss_pred             ccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccch--HHHHHHHHhC-CCceEEEEEeeccccchhH-
Confidence            35677899999999888766666778999999999998765322111  1222233332 2578999999998753221 


Q ss_pred             hhhhhhhHH---HHhhc--ccceEEEeCcccCCChhHH
Q 006490          135 SLEEVMGPI---MQQFR--EIETCVECSATTMIQVPDV  167 (643)
Q Consensus       135 ~~~~~~~~~---~~~~~--~~~~~~~~Sa~~~~gi~~l  167 (643)
                      ...+....+   ...++  ...+++++||++|.|+.++
T Consensus       179 ~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~  216 (474)
T PRK05124        179 VFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ  216 (474)
T ss_pred             HHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence            122222222   23332  1246899999999999864

>PLN03126 Elongation factor Tu; Provisional

Probab=99.41  E-value=5.5e-12  Score=135.25  Aligned_cols=146  Identities=17%  Similarity=0.111  Sum_probs=97.9

Q ss_pred             ccCceEEEEEEcCCCCCHHHHHHHHhcCCCCC------CC---C-------CCcccceEEEEEEcCCCcEEEEEEecCCc
Q 006490          419 TERNVFRCLLFGPQNAGKSALLNSFLERPFSE------NY---A-------PTTGEQYAVNVVDQPGGNKKTLILQEIPE  482 (643)
Q Consensus       419 ~~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~------~~---~-------~t~~~~~~~~~v~~~g~~~~~~i~d~~g~  482 (643)
                      ..+..++|+++|.+++|||||+++|++.....      .+   +       ..++.+.....+.+  ....+.++|++|+
T Consensus        77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~--~~~~i~liDtPGh  154 (478)
T PLN03126         77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYET--ENRHYAHVDCPGH  154 (478)
T ss_pred             ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEec--CCcEEEEEECCCH
Confidence            35667999999999999999999999632111      11   0       01111122222333  3456778999999


Q ss_pred             hhhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCc-EEEEEeCCCCCCcccc----HHHHHH
Q 006490          483 EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVP-CLLIASKDDLKPYTMA----VQDSAR  557 (643)
Q Consensus       483 ~~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~p-vilv~NK~Dl~~~~~~----~~~~~~  557 (643)
                      +.+-.-  ....+..+|++++|+|+.++.. .+..+++..+...      ++| +|+++||+|+......    .+++..
T Consensus       155 ~~f~~~--~~~g~~~aD~ailVVda~~G~~-~qt~e~~~~~~~~------gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~  225 (478)
T PLN03126        155 ADYVKN--MITGAAQMDGAILVVSGADGPM-PQTKEHILLAKQV------GVPNMVVFLNKQDQVDDEELLELVELEVRE  225 (478)
T ss_pred             HHHHHH--HHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc------CCCeEEEEEecccccCHHHHHHHHHHHHHH
Confidence            887554  5677789999999999998754 3344555544444      788 7789999999763322    335556


Q ss_pred             HHHHhCCC----CcEEeeeccC
Q 006490          558 VTQELGIE----PPIPVSMKSK  575 (643)
Q Consensus       558 ~~~~~~~~----~~~~vSa~~g  575 (643)
                      +.+..++.    +++++||.+|
T Consensus       226 ~l~~~g~~~~~~~~vp~Sa~~g  247 (478)
T PLN03126        226 LLSSYEFPGDDIPIISGSALLA  247 (478)
T ss_pred             HHHhcCCCcCcceEEEEEcccc
Confidence            66666543    6899999987

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.41  E-value=9.2e-12  Score=111.50  Aligned_cols=156  Identities=13%  Similarity=0.180  Sum_probs=110.2

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC-------C---cccceEEEEEEcCCCcEEEEEEecCCchhhhhhhc
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAP-------T---TGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILS  490 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~-------t---~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~  490 (643)
                      -...||+|+|+.++||||++.++.......+..+       .   ++.....-.+... +.....+++|+||+++..+  
T Consensus         8 ~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~-~~~~v~LfgtPGq~RF~fm--   84 (187)
T COG2229           8 MIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELD-EDTGVHLFGTPGQERFKFM--   84 (187)
T ss_pred             ccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEc-CcceEEEecCCCcHHHHHH--
Confidence            3467999999999999999999998874332111       1   1111111112222 3356678999999999988  


Q ss_pred             cHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHh--CCCCcE
Q 006490          491 NKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQEL--GIEPPI  568 (643)
Q Consensus       491 ~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~--~~~~~~  568 (643)
                      +.-..++++++++++|.+.+..+ .....+..+....     .+|+++++||.||..... .+.++++...-  .. |++
T Consensus        85 ~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~-----~ip~vVa~NK~DL~~a~p-pe~i~e~l~~~~~~~-~vi  156 (187)
T COG2229          85 WEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRN-----PIPVVVAINKQDLFDALP-PEKIREALKLELLSV-PVI  156 (187)
T ss_pred             HHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhcc-----CCCEEEEeeccccCCCCC-HHHHHHHHHhccCCC-cee
Confidence            77888999999999999999887 4445554444331     389999999999987443 33444443333  44 599


Q ss_pred             EeeeccC-CHHHHHHHHHHH
Q 006490          569 PVSMKSK-DLNNVFSRIIWA  587 (643)
Q Consensus       569 ~vSa~~g-~i~~l~~~l~~~  587 (643)
                      .++|..+ +..+.++.+...
T Consensus       157 ~~~a~e~~~~~~~L~~ll~~  176 (187)
T COG2229         157 EIDATEGEGARDQLDVLLLK  176 (187)
T ss_pred             eeecccchhHHHHHHHHHhh
Confidence            9999999 998888887765

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.41  E-value=1.5e-12  Score=138.15  Aligned_cols=151  Identities=18%  Similarity=0.076  Sum_probs=96.2

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCCCCCC------------CCCC-------------------CCee--eCCcccCCce
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATESVPEKV------------PPVH-------------------APTR--LPPDFYPDRV   59 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~~------------~~~~-------------------~~~~--~~~~~~~~~~   59 (643)
                      ++|+++|+.++|||||+++|+...-....            .+..                   +.+.  ....+..++.
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~   80 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR   80 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence            58999999999999999999754311110            1110                   0000  1122335677


Q ss_pred             eEEEEeCCCCCcchhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhh--
Q 006490           60 PVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLE--  137 (643)
Q Consensus        60 ~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~--  137 (643)
                      .+.|+||||++++.......+..+|++|+|+|+......+..  +.+..++... ..++|+|+||+|+...... ..+  
T Consensus        81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~--~~~~~~~~~~-~~~iivviNK~D~~~~~~~-~~~~i  156 (406)
T TIGR02034        81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTR--RHSYIASLLG-IRHVVLAVNKMDLVDYDEE-VFENI  156 (406)
T ss_pred             EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccH--HHHHHHHHcC-CCcEEEEEEecccccchHH-HHHHH
Confidence            899999999988877777789999999999998765332221  2233344432 3468999999998753221 112  


Q ss_pred             -hhhhHHHHhhcc-cceEEEeCcccCCChhHH
Q 006490          138 -EVMGPIMQQFRE-IETCVECSATTMIQVPDV  167 (643)
Q Consensus       138 -~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~l  167 (643)
                       +....+...++. ..+++++||.+|.|+.+.
T Consensus       157 ~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~~  188 (406)
T TIGR02034       157 KKDYLAFAEQLGFRDVTFIPLSALKGDNVVSR  188 (406)
T ss_pred             HHHHHHHHHHcCCCCccEEEeecccCCCCccc
Confidence             222223333332 126899999999999863

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>PLN03127 Elongation factor Tu; Provisional

Probab=99.41  E-value=3.5e-12  Score=136.09  Aligned_cols=163  Identities=13%  Similarity=0.157  Sum_probs=102.1

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHhcC------CC--C---CC------CCCCCCCeeeCCcccCCceeEEEEeCCCCC
Q 006490            8 SSRTGVRVVVVGDRGTGKSSLIAAAATE------SV--P---EK------VPPVHAPTRLPPDFYPDRVPVTIIDTSSSL   70 (643)
Q Consensus         8 ~~~~~~kI~lvG~~~vGKSsL~n~l~~~------~~--~---~~------~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~   70 (643)
                      ..+++++|+++|+.++|||||+++|++.      ..  .   .+      ..+++- ......+..++..+.++||||+.
T Consensus        57 ~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi-~~~~~~~~~~~~~i~~iDtPGh~  135 (447)
T PLN03127         57 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITI-ATAHVEYETAKRHYAHVDCPGHA  135 (447)
T ss_pred             cCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCcee-eeeEEEEcCCCeEEEEEECCCcc
Confidence            3567899999999999999999999732      10  0   00      111111 11223344567789999999998


Q ss_pred             cchhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCc-EEEEEecccCCCCCccc-hhhhhhhHHHHhhc
Q 006490           71 ENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVP-IIVAGCKLDLRGDHNAT-SLEEVMGPIMQQFR  148 (643)
Q Consensus        71 ~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p-vilv~NK~D~~~~~~~~-~~~~~~~~~~~~~~  148 (643)
                      .+.......+..+|++++|+|++.....+.  ...+..+...  ++| +|+|+||+|+....... .....+..+...++
T Consensus       136 ~f~~~~~~g~~~aD~allVVda~~g~~~qt--~e~l~~~~~~--gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~  211 (447)
T PLN03127        136 DYVKNMITGAAQMDGGILVVSAPDGPMPQT--KEHILLARQV--GVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYK  211 (447)
T ss_pred             chHHHHHHHHhhCCEEEEEEECCCCCchhH--HHHHHHHHHc--CCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhC
Confidence            887777777788999999999876543332  2355566666  788 57899999987532110 01112223333222


Q ss_pred             ---ccceEEEeCcc---cCCC-------hhHHHHHHHHHH
Q 006490          149 ---EIETCVECSAT---TMIQ-------VPDVFYYAQKAV  175 (643)
Q Consensus       149 ---~~~~~~~~Sa~---~~~g-------i~~l~~~i~~~~  175 (643)
                         ...+++++||.   +|.|       +.+|++.+...+
T Consensus       212 ~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l  251 (447)
T PLN03127        212 FPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYI  251 (447)
T ss_pred             CCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhC
Confidence               12467888876   4555       556666655543

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.40  E-value=6e-12  Score=109.50  Aligned_cols=107  Identities=26%  Similarity=0.387  Sum_probs=72.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCC-C-CcccceEEEEEEcCCCcEEEEEEecCCchhh-------hhhhccHHhh
Q 006490          425 RCLLFGPQNAGKSALLNSFLERPFSENYA-P-TTGEQYAVNVVDQPGGNKKTLILQEIPEEGV-------KKILSNKEAL  495 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~~~~~~~~-~-t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~-------~~~~~~~~~~  495 (643)
                      +|+|+|.+|||||||+|+|++.....++. + ++.. .....+...  ...+.++||+|-..-       ....+....+
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~-~~~~~~~~~--~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~   77 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRD-PVYGQFEYN--NKKFILVDTPGINDGESQDNDGKEIRKFLEQI   77 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSS-EEEEEEEET--TEEEEEEESSSCSSSSHHHHHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccccccceee-eeeeeeeec--eeeEEEEeCCCCcccchhhHHHHHHHHHHHHH
Confidence            68999999999999999999976544444 3 3333 233444444  345568999994211       1112245566


Q ss_pred             ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeC
Q 006490          496 ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASK  542 (643)
Q Consensus       496 ~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK  542 (643)
                      ..+|++++|+|++++.. +....++..+. .      +.|+++|+||
T Consensus        78 ~~~d~ii~vv~~~~~~~-~~~~~~~~~l~-~------~~~~i~v~NK  116 (116)
T PF01926_consen   78 SKSDLIIYVVDASNPIT-EDDKNILRELK-N------KKPIILVLNK  116 (116)
T ss_dssp             CTESEEEEEEETTSHSH-HHHHHHHHHHH-T------TSEEEEEEES
T ss_pred             HHCCEEEEEEECCCCCC-HHHHHHHHHHh-c------CCCEEEEEcC
Confidence            89999999999888533 33445555553 2      8999999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>cd04169 RF3 RF3 subfamily

Probab=99.40  E-value=7.9e-12  Score=124.67  Aligned_cols=131  Identities=18%  Similarity=0.200  Sum_probs=87.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCC---------CC-Cccc----------ceEEEEEEcCCCcEEEEEEecCCchh
Q 006490          425 RCLLFGPQNAGKSALLNSFLERPFSENY---------AP-TTGE----------QYAVNVVDQPGGNKKTLILQEIPEEG  484 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~~~~~~~---------~~-t~~~----------~~~~~~v~~~g~~~~~~i~d~~g~~~  484 (643)
                      +|+|+|.+|+|||||+++|+...-.+..         .. |+.+          ........+..+..++.+|||+|+..
T Consensus         4 ni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~d   83 (267)
T cd04169           4 TFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHED   83 (267)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCchH
Confidence            6999999999999999999853222111         11 1111          12233333333567888999999987


Q ss_pred             hhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCC
Q 006490          485 VKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGI  564 (643)
Q Consensus       485 ~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~  564 (643)
                      +...  ...+++.+|++++|+|++++.. .....++......      ++|+++++||+|+..... .+..+++.+.++.
T Consensus        84 f~~~--~~~~l~~aD~~IlVvda~~g~~-~~~~~i~~~~~~~------~~P~iivvNK~D~~~a~~-~~~~~~l~~~l~~  153 (267)
T cd04169          84 FSED--TYRTLTAVDSAVMVIDAAKGVE-PQTRKLFEVCRLR------GIPIITFINKLDREGRDP-LELLDEIEEELGI  153 (267)
T ss_pred             HHHH--HHHHHHHCCEEEEEEECCCCcc-HHHHHHHHHHHhc------CCCEEEEEECCccCCCCH-HHHHHHHHHHHCC
Confidence            7654  5678899999999999988644 2233444433332      799999999999865322 2345667777776


Q ss_pred             C
Q 006490          565 E  565 (643)
Q Consensus       565 ~  565 (643)
                      .
T Consensus       154 ~  154 (267)
T cd04169         154 D  154 (267)
T ss_pred             C
Confidence            5

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.39  E-value=1.1e-11  Score=119.88  Aligned_cols=113  Identities=16%  Similarity=0.123  Sum_probs=77.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCC------------------CcccceEEEEEEcC------CCcEEEEEEecC
Q 006490          425 RCLLFGPQNAGKSALLNSFLERPFSENYAP------------------TTGEQYAVNVVDQP------GGNKKTLILQEI  480 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~~~~~~~~~------------------t~~~~~~~~~v~~~------g~~~~~~i~d~~  480 (643)
                      +|+|+|..++|||||+.+|+..........                  |.............      +....+.+|||+
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP   81 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP   81 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence            589999999999999999986432211100                  11111111112211      335677889999


Q ss_pred             CchhhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCC
Q 006490          481 PEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLK  546 (643)
Q Consensus       481 g~~~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~  546 (643)
                      |++.+...  ...+++.+|++++|+|++++.+.+. ...+......      ++|+++|+||+|+.
T Consensus        82 G~~~f~~~--~~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~~~------~~p~ilviNKiD~~  138 (222)
T cd01885          82 GHVDFSSE--VTAALRLCDGALVVVDAVEGVCVQT-ETVLRQALKE------RVKPVLVINKIDRL  138 (222)
T ss_pred             CccccHHH--HHHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHHHc------CCCEEEEEECCCcc
Confidence            99888776  7888999999999999999876543 3333333332      78999999999986

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.39  E-value=1.4e-11  Score=125.28  Aligned_cols=161  Identities=19%  Similarity=0.158  Sum_probs=96.4

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCCCCCC-Cc-ccceEEEEEE-------------------cCC-CcEEEEEEecCCc-
Q 006490          426 CLLFGPQNAGKSALLNSFLERPFSENYAP-TT-GEQYAVNVVD-------------------QPG-GNKKTLILQEIPE-  482 (643)
Q Consensus       426 i~ivG~~nvGKSSLln~l~~~~~~~~~~~-t~-~~~~~~~~v~-------------------~~g-~~~~~~i~d~~g~-  482 (643)
                      |+|+|.||||||||+|+|++........| || ........+.                   ..| ....+.+||++|. 
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv   80 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV   80 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence            57999999999999999999875432223 22 2222111110                   122 2245789999996 


Q ss_pred             ---hhhhhh-hccHHhhccCCEEEEEEeCCC---------------hh-hHHHH----HHHHH--------HHH------
Q 006490          483 ---EGVKKI-LSNKEALASCDVTIFVYDSSD---------------EY-SWKRT----KELLV--------EVA------  524 (643)
Q Consensus       483 ---~~~~~~-~~~~~~~~~ad~illv~D~s~---------------~~-s~~~~----~~~~~--------~i~------  524 (643)
                         +....+ .+....+++||++++|+|++.               |. .++.+    ..|..        .+.      
T Consensus        81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~~  160 (318)
T cd01899          81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKADAE  160 (318)
T ss_pred             CCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence               333333 124557999999999999973               11 11111    11100        000      


Q ss_pred             --------------------------HhcC-C------------------CCCCCcEEEEEeCCCCCCccccHHHHHHHH
Q 006490          525 --------------------------RLGE-D------------------SGYGVPCLLIASKDDLKPYTMAVQDSARVT  559 (643)
Q Consensus       525 --------------------------~~~~-~------------------~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~  559 (643)
                                                +... .                  ....+|+|+|+||+|+.....   ..+.+.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~~~---~~~~l~  237 (318)
T cd01899         161 KTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAEN---NISKLR  237 (318)
T ss_pred             CccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccChHH---HHHHHH
Confidence                                      0000 0                  011579999999999864322   222344


Q ss_pred             HHhCCCCcEEeeeccC-CHHHHHH-HHHHHHh
Q 006490          560 QELGIEPPIPVSMKSK-DLNNVFS-RIIWAAE  589 (643)
Q Consensus       560 ~~~~~~~~~~vSa~~g-~i~~l~~-~l~~~~~  589 (643)
                      ...+..+++++||+.+ +++++.+ .+.+.+.
T Consensus       238 ~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lP  269 (318)
T cd01899         238 LKYPDEIVVPTSAEAELALRRAAKQGLIKYDP  269 (318)
T ss_pred             hhCCCCeEEEEeCcccccHHHHHHhhHHHhCC
Confidence            4455556999999999 9999998 5888764

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>PRK00049 elongation factor Tu; Reviewed

Probab=99.39  E-value=1.3e-11  Score=130.50  Aligned_cols=158  Identities=15%  Similarity=0.112  Sum_probs=102.9

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCC------CCCC----------CCCcccceEEEEEEcCCCcEEEEEEecCCchh
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPF------SENY----------APTTGEQYAVNVVDQPGGNKKTLILQEIPEEG  484 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~------~~~~----------~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~  484 (643)
                      +..++|+++|..++|||||+++|++...      ...+          ...++.+.....+..  ....+.++||+|+..
T Consensus        10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~--~~~~i~~iDtPG~~~   87 (396)
T PRK00049         10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYET--EKRHYAHVDCPGHAD   87 (396)
T ss_pred             CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcC--CCeEEEEEECCCHHH
Confidence            4568999999999999999999997311      0010          011111122222222  345677899999876


Q ss_pred             hhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEE-EEEeCCCCCCcccc----HHHHHHHH
Q 006490          485 VKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCL-LIASKDDLKPYTMA----VQDSARVT  559 (643)
Q Consensus       485 ~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvi-lv~NK~Dl~~~~~~----~~~~~~~~  559 (643)
                      +..-  ....+..+|++++|+|+.++.. .+..+.+..+...      ++|++ +++||+|+......    ..++..+.
T Consensus        88 f~~~--~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~~~~------g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l  158 (396)
T PRK00049         88 YVKN--MITGAAQMDGAILVVSAADGPM-PQTREHILLARQV------GVPYIVVFLNKCDMVDDEELLELVEMEVRELL  158 (396)
T ss_pred             HHHH--HHhhhccCCEEEEEEECCCCCc-hHHHHHHHHHHHc------CCCEEEEEEeecCCcchHHHHHHHHHHHHHHH
Confidence            6543  5667889999999999988644 3344444444444      78976 58999999753222    23455555


Q ss_pred             HHhCC----CCcEEeeeccC-C----------HHHHHHHHHHHHh
Q 006490          560 QELGI----EPPIPVSMKSK-D----------LNNVFSRIIWAAE  589 (643)
Q Consensus       560 ~~~~~----~~~~~vSa~~g-~----------i~~l~~~l~~~~~  589 (643)
                      ..+++    .+++++||++| +          +..+++.|...+.
T Consensus       159 ~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~  203 (396)
T PRK00049        159 SKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIP  203 (396)
T ss_pred             HhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCC
Confidence            55555    36899999986 3          4677777766543

>PLN03126 Elongation factor Tu; Provisional

Probab=99.39  E-value=3.4e-12  Score=136.78  Aligned_cols=153  Identities=14%  Similarity=0.180  Sum_probs=100.7

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHhcCCCC------CCC-----CC---CCCCee--eCCcccCCceeEEEEeCCCCCc
Q 006490            8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVP------EKV-----PP---VHAPTR--LPPDFYPDRVPVTIIDTSSSLE   71 (643)
Q Consensus         8 ~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~------~~~-----~~---~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~   71 (643)
                      ..++.++|+++|++++|||||+++|+.....      ..+     .+   ..+.+.  ....+..++..+.++||||+++
T Consensus        77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~  156 (478)
T PLN03126         77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD  156 (478)
T ss_pred             ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHH
Confidence            3567899999999999999999999963210      000     00   000110  1122445677899999999998


Q ss_pred             chhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCc-EEEEEecccCCCCCcc-chhhhhhhHHHHhhc-
Q 006490           72 NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVP-IIVAGCKLDLRGDHNA-TSLEEVMGPIMQQFR-  148 (643)
Q Consensus        72 ~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p-vilv~NK~D~~~~~~~-~~~~~~~~~~~~~~~-  148 (643)
                      |.......+..+|++++|+|+......+.  .+++..+...  ++| +|+++||+|+...... ....+.+..+...++ 
T Consensus       157 f~~~~~~g~~~aD~ailVVda~~G~~~qt--~e~~~~~~~~--gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~  232 (478)
T PLN03126        157 YVKNMITGAAQMDGAILVVSGADGPMPQT--KEHILLAKQV--GVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEF  232 (478)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCC
Confidence            88777788889999999999886543332  2455666666  788 7789999998753211 012223344444432 


Q ss_pred             --ccceEEEeCcccCCCh
Q 006490          149 --EIETCVECSATTMIQV  164 (643)
Q Consensus       149 --~~~~~~~~Sa~~~~gi  164 (643)
                        ...+++++||.+|.++
T Consensus       233 ~~~~~~~vp~Sa~~g~n~  250 (478)
T PLN03126        233 PGDDIPIISGSALLALEA  250 (478)
T ss_pred             CcCcceEEEEEccccccc
Confidence              1247899999988654

>PRK09866 hypothetical protein; Provisional

Probab=99.38  E-value=1.2e-11  Score=131.69  Aligned_cols=112  Identities=17%  Similarity=0.125  Sum_probs=77.5

Q ss_pred             eeEEEEeCCCCCcc-----hhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCcc
Q 006490           59 VPVTIIDTSSSLEN-----KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA  133 (643)
Q Consensus        59 ~~~~i~Dt~G~~~~-----~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~  133 (643)
                      ..+.|+||||....     ...+...+.++|+|+||+|++...+..+.  .+.+.+++...+.|+++|+||+|+.+....
T Consensus       230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~De--eIlk~Lkk~~K~~PVILVVNKIDl~dreed  307 (741)
T PRK09866        230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDE--EVREAILAVGQSVPLYVLVNKFDQQDRNSD  307 (741)
T ss_pred             CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHH--HHHHHHHhcCCCCCEEEEEEcccCCCcccc
Confidence            45689999998652     12344689999999999999876555543  467777766333699999999998643221


Q ss_pred             chhhhhhhHHHH-h----hcccceEEEeCcccCCChhHHHHHHHHH
Q 006490          134 TSLEEVMGPIMQ-Q----FREIETCVECSATTMIQVPDVFYYAQKA  174 (643)
Q Consensus       134 ~~~~~~~~~~~~-~----~~~~~~~~~~Sa~~~~gi~~l~~~i~~~  174 (643)
                        ..+.+..+.. .    ......++++||+.|.|++++++.+...
T Consensus       308 --dkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~  351 (741)
T PRK09866        308 --DADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANN  351 (741)
T ss_pred             --hHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence              1222333322 1    1123468999999999999999988764

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.38  E-value=5.2e-12  Score=141.88  Aligned_cols=150  Identities=20%  Similarity=0.245  Sum_probs=96.8

Q ss_pred             cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC------------CCccc---------------------ceEEEEEE
Q 006490          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYA------------PTTGE---------------------QYAVNVVD  466 (643)
Q Consensus       420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~------------~t~~~---------------------~~~~~~v~  466 (643)
                      .+..++|+|+|.+|+|||||+++|+.....+...            .++++                     +.....+.
T Consensus        21 ~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~  100 (632)
T PRK05506         21 RKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA  100 (632)
T ss_pred             CCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc
Confidence            3456899999999999999999999865544311            12111                     11122233


Q ss_pred             cCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCC
Q 006490          467 QPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLK  546 (643)
Q Consensus       467 ~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~  546 (643)
                      +  ....+.++||+|++.+...  ....+..+|++++|+|++++.. .+..+....+....     ..|+++|+||+|+.
T Consensus       101 ~--~~~~~~liDtPG~~~f~~~--~~~~~~~aD~~llVvda~~g~~-~~t~e~~~~~~~~~-----~~~iivvvNK~D~~  170 (632)
T PRK05506        101 T--PKRKFIVADTPGHEQYTRN--MVTGASTADLAIILVDARKGVL-TQTRRHSFIASLLG-----IRHVVLAVNKMDLV  170 (632)
T ss_pred             c--CCceEEEEECCChHHHHHH--HHHHHHhCCEEEEEEECCCCcc-ccCHHHHHHHHHhC-----CCeEEEEEEecccc
Confidence            3  3346678999998876443  4557899999999999987643 22222222222221     35788999999997


Q ss_pred             Cc-cc-c---HHHHHHHHHHhCCC--CcEEeeeccC-CHHH
Q 006490          547 PY-TM-A---VQDSARVTQELGIE--PPIPVSMKSK-DLNN  579 (643)
Q Consensus       547 ~~-~~-~---~~~~~~~~~~~~~~--~~~~vSa~~g-~i~~  579 (643)
                      +. .. .   ..+...+.+.+++.  +++++||++| |+++
T Consensus       171 ~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        171 DYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             cchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence            42 11 1   23334444566764  5899999999 9874

>PLN03127 Elongation factor Tu; Provisional

Probab=99.38  E-value=1.6e-11  Score=131.11  Aligned_cols=159  Identities=14%  Similarity=0.080  Sum_probs=102.1

Q ss_pred             cCceEEEEEEcCCCCCHHHHHHHHhc------CCCCCCCC----------CCcccceEEEEEEcCCCcEEEEEEecCCch
Q 006490          420 ERNVFRCLLFGPQNAGKSALLNSFLE------RPFSENYA----------PTTGEQYAVNVVDQPGGNKKTLILQEIPEE  483 (643)
Q Consensus       420 ~~~~~ki~ivG~~nvGKSSLln~l~~------~~~~~~~~----------~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~  483 (643)
                      .+..++|+++|..++|||||+++|.+      ..+...+.          ..++.+.....+..  ....+.++||+|+.
T Consensus        58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~--~~~~i~~iDtPGh~  135 (447)
T PLN03127         58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYET--AKRHYAHVDCPGHA  135 (447)
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcC--CCeEEEEEECCCcc
Confidence            45678999999999999999999973      22221110          11222222233333  44577889999987


Q ss_pred             hhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCc-EEEEEeCCCCCCccccH----HHHHHH
Q 006490          484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVP-CLLIASKDDLKPYTMAV----QDSARV  558 (643)
Q Consensus       484 ~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~p-vilv~NK~Dl~~~~~~~----~~~~~~  558 (643)
                      .+..-  ....+..+|++++|+|++++.. .+..+.+..+...      ++| +|+++||+|+.+.....    ++..++
T Consensus       136 ~f~~~--~~~g~~~aD~allVVda~~g~~-~qt~e~l~~~~~~------gip~iIvviNKiDlv~~~~~~~~i~~~i~~~  206 (447)
T PLN03127        136 DYVKN--MITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQV------GVPSLVVFLNKVDVVDDEELLELVEMELREL  206 (447)
T ss_pred             chHHH--HHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHHHc------CCCeEEEEEEeeccCCHHHHHHHHHHHHHHH
Confidence            66443  4556678999999999987644 3334444444444      789 57889999998633322    233344


Q ss_pred             HHHhCC----CCcEEeeec---cC-C-------HHHHHHHHHHHHh
Q 006490          559 TQELGI----EPPIPVSMK---SK-D-------LNNVFSRIIWAAE  589 (643)
Q Consensus       559 ~~~~~~----~~~~~vSa~---~g-~-------i~~l~~~l~~~~~  589 (643)
                      ...+++    .|++++||.   +| |       +.+|++.+.+.+.
T Consensus       207 l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp  252 (447)
T PLN03127        207 LSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP  252 (447)
T ss_pred             HHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence            444444    257888876   44 5       6778888777654

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.38  E-value=3.1e-12  Score=143.72  Aligned_cols=155  Identities=15%  Similarity=0.070  Sum_probs=99.0

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCC------------CCCCC-C------------------Ce--eeCCcc
Q 006490            8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEK------------VPPVH-A------------------PT--RLPPDF   54 (643)
Q Consensus         8 ~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~------------~~~~~-~------------------~~--~~~~~~   54 (643)
                      ..+..++|+|+|++|+|||||+++|+...-...            ..+++ .                  .+  .....+
T Consensus        20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~   99 (632)
T PRK05506         20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF   99 (632)
T ss_pred             cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence            456678999999999999999999997542111            11110 0                  00  011233


Q ss_pred             cCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccc
Q 006490           55 YPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNAT  134 (643)
Q Consensus        55 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~  134 (643)
                      ..++..+.|+||||++.+.......+..+|++++|+|++.....+..  ..+..+.... .+|+|+|+||+|+...... 
T Consensus       100 ~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~--e~~~~~~~~~-~~~iivvvNK~D~~~~~~~-  175 (632)
T PRK05506        100 ATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTR--RHSFIASLLG-IRHVVLAVNKMDLVDYDQE-  175 (632)
T ss_pred             ccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCH--HHHHHHHHhC-CCeEEEEEEecccccchhH-
Confidence            35677899999999887766666778999999999998765332211  2333344442 3678999999998752221 


Q ss_pred             hhhhh---hhHHHHhhcc-cceEEEeCcccCCChhH
Q 006490          135 SLEEV---MGPIMQQFRE-IETCVECSATTMIQVPD  166 (643)
Q Consensus       135 ~~~~~---~~~~~~~~~~-~~~~~~~Sa~~~~gi~~  166 (643)
                      ..++.   +..+..+++. ..+++++||++|.|+.+
T Consensus       176 ~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        176 VFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             HHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence            12222   2223334332 12589999999999984

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.37  E-value=2e-11  Score=128.00  Aligned_cols=81  Identities=23%  Similarity=0.340  Sum_probs=55.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCCCCCeeeCCc----------------------cc-CCceeEEEEeCCC
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATESVPE-KVPPVHAPTRLPPD----------------------FY-PDRVPVTIIDTSS   68 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~-~~~~~~~~~~~~~~----------------------~~-~~~~~~~i~Dt~G   68 (643)
                      ++|+|||.||||||||+|+|++..+.. ++|.++........                      .. .....+++|||||
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG   81 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG   81 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence            689999999999999999999887532 35432211111100                      00 1236789999999


Q ss_pred             CCc----chhhhHHh---hccCCEEEEEEECC
Q 006490           69 SLE----NKGKLNEE---LKRADAVVLTYACN   93 (643)
Q Consensus        69 ~~~----~~~~~~~~---~~~ad~il~v~d~~   93 (643)
                      +..    ...+...+   ++.+|++++|+|+.
T Consensus        82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~  113 (396)
T PRK09602         82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS  113 (396)
T ss_pred             cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence            753    22333344   89999999999986

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.37  E-value=2.3e-12  Score=128.65  Aligned_cols=145  Identities=14%  Similarity=0.140  Sum_probs=93.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCC-----CCCCC-------------CcccceEEEEEEcCCCcEEEEEEecCCchhhh
Q 006490          425 RCLLFGPQNAGKSALLNSFLERPFS-----ENYAP-------------TTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK  486 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~~~~-----~~~~~-------------t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~  486 (643)
                      +|+|+|.+|+|||||+++|+...-.     .+...             .++.......+.+  +..++.++||+|...+.
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~--~~~~i~liDTPG~~df~   78 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFW--KDHRINIIDTPGHVDFT   78 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEE--CCEEEEEEECCCcHHHH
Confidence            4899999999999999999742111     11111             0111112223333  34677789999987665


Q ss_pred             hhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCC-
Q 006490          487 KILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE-  565 (643)
Q Consensus       487 ~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-  565 (643)
                      ..  +..+++.+|++++|+|++++.. ......+..+...      ++|+++++||+|+.... .....+++.+.++.. 
T Consensus        79 ~~--~~~~l~~aD~ailVVDa~~g~~-~~t~~~~~~~~~~------~~p~ivviNK~D~~~a~-~~~~~~~l~~~l~~~~  148 (270)
T cd01886          79 IE--VERSLRVLDGAVAVFDAVAGVE-PQTETVWRQADRY------NVPRIAFVNKMDRTGAD-FFRVVEQIREKLGANP  148 (270)
T ss_pred             HH--HHHHHHHcCEEEEEEECCCCCC-HHHHHHHHHHHHc------CCCEEEEEECCCCCCCC-HHHHHHHHHHHhCCCc
Confidence            54  6788999999999999988654 2234444444444      89999999999987522 233455555555543 


Q ss_pred             --CcEEeeeccC--CHHHHH
Q 006490          566 --PPIPVSMKSK--DLNNVF  581 (643)
Q Consensus       566 --~~~~vSa~~g--~i~~l~  581 (643)
                        ..+++|+..+  |+-+++
T Consensus       149 ~~~~~Pisa~~~f~g~vd~~  168 (270)
T cd01886         149 VPLQLPIGEEDDFRGVVDLI  168 (270)
T ss_pred             eEEEeccccCCCceEEEEcc
Confidence              3588898865  554443

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>PRK12288 GTPase RsgA; Reviewed

Probab=99.37  E-value=9.6e-12  Score=127.99  Aligned_cols=85  Identities=16%  Similarity=0.143  Sum_probs=60.1

Q ss_pred             hccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcc
Q 006490           80 LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT  159 (643)
Q Consensus        80 ~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  159 (643)
                      ..++|.+++|++++...++..+. +|+..+...  ++|+++|+||+|+..........+ .......++  .+++++||+
T Consensus       118 aANvD~vlIV~s~~p~~s~~~Ld-r~L~~a~~~--~i~~VIVlNK~DL~~~~~~~~~~~-~~~~y~~~g--~~v~~vSA~  191 (347)
T PRK12288        118 AANIDQIVIVSAVLPELSLNIID-RYLVACETL--GIEPLIVLNKIDLLDDEGRAFVNE-QLDIYRNIG--YRVLMVSSH  191 (347)
T ss_pred             EEEccEEEEEEeCCCCCCHHHHH-HHHHHHHhc--CCCEEEEEECccCCCcHHHHHHHH-HHHHHHhCC--CeEEEEeCC
Confidence            45689999999998888888887 477666544  799999999999975421101111 111222333  378999999


Q ss_pred             cCCChhHHHHH
Q 006490          160 TMIQVPDVFYY  170 (643)
Q Consensus       160 ~~~gi~~l~~~  170 (643)
                      ++.|+++|++.
T Consensus       192 tg~GideL~~~  202 (347)
T PRK12288        192 TGEGLEELEAA  202 (347)
T ss_pred             CCcCHHHHHHH
Confidence            99999988763

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.36  E-value=4.1e-11  Score=125.63  Aligned_cols=189  Identities=21%  Similarity=0.188  Sum_probs=108.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC-Cc-ccceEEEEEE-------------------cCC-CcEEEEEEecCC
Q 006490          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAP-TT-GEQYAVNVVD-------------------QPG-GNKKTLILQEIP  481 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~-t~-~~~~~~~~v~-------------------~~g-~~~~~~i~d~~g  481 (643)
                      ++|+|+|.||||||||+|+|++........| +| ........+.                   ..| ....+.++|++|
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG   81 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG   81 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence            6899999999999999999999876542223 32 2222111110                   111 123567899999


Q ss_pred             c----hhhhhh-hccHHhhccCCEEEEEEeCCC---------------hh-hHHHH----HHH-----------------
Q 006490          482 E----EGVKKI-LSNKEALASCDVTIFVYDSSD---------------EY-SWKRT----KEL-----------------  519 (643)
Q Consensus       482 ~----~~~~~~-~~~~~~~~~ad~illv~D~s~---------------~~-s~~~~----~~~-----------------  519 (643)
                      .    .....+ .+....++.||++++|+|+..               |. .++.+    ..|                 
T Consensus        82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~~~~~~~~~~~~~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~~~~~  161 (396)
T PRK09602         82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDASGSTDEEGNPVEPGSHDPVEDIKFLEEELDMWIYGILEKNWEKFSRKAQ  161 (396)
T ss_pred             cCCCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccCCcccCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence            3    222222 124566899999999999972               11 11100    000                 


Q ss_pred             -----------------------HHHHHH-hcCC------------------CCCCCcEEEEEeCCCCCCccccHHHHHH
Q 006490          520 -----------------------LVEVAR-LGED------------------SGYGVPCLLIASKDDLKPYTMAVQDSAR  557 (643)
Q Consensus       520 -----------------------~~~i~~-~~~~------------------~~~~~pvilv~NK~Dl~~~~~~~~~~~~  557 (643)
                                             +.++.+ ....                  ....+|+++|+||+|+.....   ....
T Consensus       162 ~~~~~~~~~~~~~l~~~~~~e~~v~~~L~~~g~~~~~~~~~~~~~~~I~~~~l~t~KPvI~VlNK~D~~~~~~---~l~~  238 (396)
T PRK09602        162 AEKFDIEEALAEQLSGLGINEEHVKEALRELGLPEDPSKWTDEDLLELARELRKISKPMVIAANKADLPPAEE---NIER  238 (396)
T ss_pred             cCCcchHHHHHHHHhhhccCHHHHHHHHHHcCCcCcccCCCHHHHHHHHHhhhhcCCCEEEEEEchhcccchH---HHHH
Confidence                                   000000 0000                  012689999999999764221   2333


Q ss_pred             HHHHhCCCCcEEeeeccC-CHHH-HHHHHHHHH-hCCCCCCCCcccccchhhhhhhhchhhHH
Q 006490          558 VTQELGIEPPIPVSMKSK-DLNN-VFSRIIWAA-EHPHLNIPETETGRNRKRYRHLVNSSLVF  617 (643)
Q Consensus       558 ~~~~~~~~~~~~vSa~~g-~i~~-l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  617 (643)
                      +.+. +...++++||+.+ ++++ +.+.+.+.+ ..+..++++..+....+ ..+.++..+..
T Consensus       239 i~~~-~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~p~~~~~d~ltd~~~r-~~E~IRk~l~~  299 (396)
T PRK09602        239 LKEE-KYYIVVPTSAEAELALRRAAKAGLIDYIPGDSDFEILGELSEKQKK-ALEYIREVLKK  299 (396)
T ss_pred             HHhc-CCCcEEEEcchhhhhHHHHHHHhHHhhCCCCCccCccccCCHHHHH-HHHHHHHHHHH
Confidence            3333 5566899999999 9999 777777765 34555555555543333 55555544433

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.36  E-value=9e-12  Score=132.27  Aligned_cols=146  Identities=18%  Similarity=0.198  Sum_probs=93.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCC------------CCC---------------------cccceEEEEEEcCCC
Q 006490          424 FRCLLFGPQNAGKSALLNSFLERPFSENY------------APT---------------------TGEQYAVNVVDQPGG  470 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~------------~~t---------------------~~~~~~~~~v~~~g~  470 (643)
                      ++|+++|..++|||||+++|+........            ..+                     .+.+.....+.+  .
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~--~   78 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFST--D   78 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEcc--C
Confidence            47999999999999999999854322111            000                     011222233333  3


Q ss_pred             cEEEEEEecCCchhhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccc
Q 006490          471 NKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM  550 (643)
Q Consensus       471 ~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~  550 (643)
                      ..++.++||+|++.+-..  ....+..+|++++|+|++.+..-+ ..+.+..+... .    ..++++++||+|+.....
T Consensus        79 ~~~~~liDtPGh~~f~~~--~~~~~~~aD~allVVda~~G~~~q-t~~~~~~~~~~-~----~~~iivviNK~D~~~~~~  150 (406)
T TIGR02034        79 KRKFIVADTPGHEQYTRN--MATGASTADLAVLLVDARKGVLEQ-TRRHSYIASLL-G----IRHVVLAVNKMDLVDYDE  150 (406)
T ss_pred             CeEEEEEeCCCHHHHHHH--HHHHHhhCCEEEEEEECCCCCccc-cHHHHHHHHHc-C----CCcEEEEEEecccccchH
Confidence            457789999999877543  456789999999999998764322 22222222222 1    246889999999975221


Q ss_pred             -c----HHHHHHHHHHhCCC--CcEEeeeccC-CHHH
Q 006490          551 -A----VQDSARVTQELGIE--PPIPVSMKSK-DLNN  579 (643)
Q Consensus       551 -~----~~~~~~~~~~~~~~--~~~~vSa~~g-~i~~  579 (643)
                       .    .+....+.+.+++.  +++++||++| |+++
T Consensus       151 ~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~  187 (406)
T TIGR02034       151 EVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS  187 (406)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence             1    22333444555653  5899999999 9875

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.36  E-value=9.2e-12  Score=134.20  Aligned_cols=151  Identities=18%  Similarity=0.186  Sum_probs=94.6

Q ss_pred             cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCC------------CCCc---------------------ccceEEEEEE
Q 006490          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENY------------APTT---------------------GEQYAVNVVD  466 (643)
Q Consensus       420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~------------~~t~---------------------~~~~~~~~v~  466 (643)
                      .+..++|+|+|.+++|||||+++|+........            ..++                     +.+.....+.
T Consensus        24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~  103 (474)
T PRK05124         24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS  103 (474)
T ss_pred             ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence            356699999999999999999999865433221            0011                     0122222233


Q ss_pred             cCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCC
Q 006490          467 QPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLK  546 (643)
Q Consensus       467 ~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~  546 (643)
                      +  ....+.++||+|++.+..-  ....+..+|++++|+|++++..-+ ..+....+... .    ..|+|+|+||+|+.
T Consensus       104 ~--~~~~i~~iDTPGh~~f~~~--~~~~l~~aD~allVVDa~~G~~~q-t~~~~~l~~~l-g----~~~iIvvvNKiD~~  173 (474)
T PRK05124        104 T--EKRKFIIADTPGHEQYTRN--MATGASTCDLAILLIDARKGVLDQ-TRRHSFIATLL-G----IKHLVVAVNKMDLV  173 (474)
T ss_pred             c--CCcEEEEEECCCcHHHHHH--HHHHHhhCCEEEEEEECCCCcccc-chHHHHHHHHh-C----CCceEEEEEeeccc
Confidence            3  3456788999998776543  455679999999999998764311 11211112222 1    24789999999997


Q ss_pred             Cccc-c----HHHHHHHHHHhC---CCCcEEeeeccC-CHHHH
Q 006490          547 PYTM-A----VQDSARVTQELG---IEPPIPVSMKSK-DLNNV  580 (643)
Q Consensus       547 ~~~~-~----~~~~~~~~~~~~---~~~~~~vSa~~g-~i~~l  580 (643)
                      .... .    .+....+.+..+   ..+++++||++| |++++
T Consensus       174 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~  216 (474)
T PRK05124        174 DYSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ  216 (474)
T ss_pred             cchhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence            4221 1    222333334444   236899999999 98764

>PRK09866 hypothetical protein; Provisional

Probab=99.35  E-value=1.4e-11  Score=131.13  Aligned_cols=108  Identities=16%  Similarity=0.157  Sum_probs=71.7

Q ss_pred             EEEEEEecCCchhh-----hhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCC
Q 006490          472 KKTLILQEIPEEGV-----KKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLK  546 (643)
Q Consensus       472 ~~~~i~d~~g~~~~-----~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~  546 (643)
                      ..++++||+|-..-     ...  ....+..||+|++|+|++++.+.. .......+.+...    +.|+++|+||+|+.
T Consensus       230 ~QIIFVDTPGIhk~~~~~L~k~--M~eqL~eADvVLFVVDat~~~s~~-DeeIlk~Lkk~~K----~~PVILVVNKIDl~  302 (741)
T PRK09866        230 GQLTLLDTPGPNEAGQPHLQKM--LNQQLARASAVLAVLDYTQLKSIS-DEEVREAILAVGQ----SVPLYVLVNKFDQQ  302 (741)
T ss_pred             CCEEEEECCCCCCccchHHHHH--HHHHHhhCCEEEEEEeCCCCCChh-HHHHHHHHHhcCC----CCCEEEEEEcccCC
Confidence            35678999996431     222  345799999999999998864423 2344444544311    25999999999986


Q ss_pred             Cccc-cHHHHHHHHH----H--hCCCCcEEeeeccC-CHHHHHHHHHH
Q 006490          547 PYTM-AVQDSARVTQ----E--LGIEPPIPVSMKSK-DLNNVFSRIIW  586 (643)
Q Consensus       547 ~~~~-~~~~~~~~~~----~--~~~~~~~~vSa~~g-~i~~l~~~l~~  586 (643)
                      +... ..+.+..+..    .  ..+..+++|||++| |++.+++.|..
T Consensus       303 dreeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~  350 (741)
T PRK09866        303 DRNSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN  350 (741)
T ss_pred             CcccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence            4221 1233333322    1  22446999999999 99999999887

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.34  E-value=4.8e-12  Score=116.50  Aligned_cols=116  Identities=21%  Similarity=0.316  Sum_probs=75.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcc-cCCceeEEEEeCCCCCcchhhhHH---hhccCCEEEEE
Q 006490           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDF-YPDRVPVTIIDTSSSLENKGKLNE---ELKRADAVVLT   89 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~---~~~~ad~il~v   89 (643)
                      .|+|+|++|+|||+|+.+|..+............  ....+ ...+..+.++|+||.++.....-.   +...+.+||||
T Consensus         5 ~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~n--~~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfv   82 (181)
T PF09439_consen    5 TVLLVGPSGSGKTALFSQLVNGKTVPTVTSMENN--IAYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIFV   82 (181)
T ss_dssp             EEEEE-STTSSHHHHHHHHHHSS---B---SSEE--EECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEEEE
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCcCCeeccccCC--ceEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEEEE
Confidence            5999999999999999999999765554443111  22222 345667999999999877654443   48899999999


Q ss_pred             EECCC-cccHHHHHHHHHHHHHh---cCCCCcEEEEEecccCCCCC
Q 006490           90 YACNQ-QSTLSRLSSYWLPELRR---LEIKVPIIVAGCKLDLRGDH  131 (643)
Q Consensus        90 ~d~~~-~~s~~~~~~~~~~~l~~---~~~~~pvilv~NK~D~~~~~  131 (643)
                      +|.+. .....++.+++...+..   .....|+++++||.|+....
T Consensus        83 vDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~  128 (181)
T PF09439_consen   83 VDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAK  128 (181)
T ss_dssp             EETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT--
T ss_pred             EeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccC
Confidence            99863 44566666666666533   23478999999999997654

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.34  E-value=3.3e-11  Score=130.95  Aligned_cols=116  Identities=17%  Similarity=0.147  Sum_probs=78.0

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCC--CC-------CC-Cc----------ccceEEEEEEcCCCcEEEEEEecCCc
Q 006490          423 VFRCLLFGPQNAGKSALLNSFLERPFSE--NY-------AP-TT----------GEQYAVNVVDQPGGNKKTLILQEIPE  482 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~--~~-------~~-t~----------~~~~~~~~v~~~g~~~~~~i~d~~g~  482 (643)
                      ..+|+|+|.+|+|||||+++|+...-.+  ..       .. ++          +..+......+..+...+.+|||+|+
T Consensus        10 ~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG~   89 (526)
T PRK00741         10 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPGH   89 (526)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCCc
Confidence            3589999999999999999997421110  00       00 10          11122222233334567888999999


Q ss_pred             hhhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC
Q 006490          483 EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP  547 (643)
Q Consensus       483 ~~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~  547 (643)
                      ..+...  ...+++.+|++++|+|++++.. .....++......      ++|+++++||+|+..
T Consensus        90 ~df~~~--~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~~------~iPiiv~iNK~D~~~  145 (526)
T PRK00741         90 EDFSED--TYRTLTAVDSALMVIDAAKGVE-PQTRKLMEVCRLR------DTPIFTFINKLDRDG  145 (526)
T ss_pred             hhhHHH--HHHHHHHCCEEEEEEecCCCCC-HHHHHHHHHHHhc------CCCEEEEEECCcccc
Confidence            877654  6778899999999999998654 2334444444333      899999999999864

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.33  E-value=6.2e-12  Score=134.34  Aligned_cols=155  Identities=14%  Similarity=0.069  Sum_probs=100.3

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCC--------------------------CCCCC---CCee--eCCcccC
Q 006490            8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEK--------------------------VPPVH---APTR--LPPDFYP   56 (643)
Q Consensus         8 ~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~--------------------------~~~~~---~~~~--~~~~~~~   56 (643)
                      ..+++++|+++|+.++|||||+.+|+...-..+                          .....   +.+-  ....+..
T Consensus         3 ~~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~   82 (447)
T PLN00043          3 KEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET   82 (447)
T ss_pred             CCCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecC
Confidence            357789999999999999999999975321000                          00000   0000  1122345


Q ss_pred             CceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECCCcccHH-------HHHHHHHHHHHhcCCCCc-EEEEEecccCC
Q 006490           57 DRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLS-------RLSSYWLPELRRLEIKVP-IIVAGCKLDLR  128 (643)
Q Consensus        57 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~-------~~~~~~~~~l~~~~~~~p-vilv~NK~D~~  128 (643)
                      ++..++++||||+++|.......+..+|++|+|+|+++. .++       ... +.+..++..  ++| +|+|+||+|+.
T Consensus        83 ~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~-eh~~~~~~~--gi~~iIV~vNKmD~~  158 (447)
T PLN00043         83 TKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTR-EHALLAFTL--GVKQMICCCNKMDAT  158 (447)
T ss_pred             CCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHH-HHHHHHHHc--CCCcEEEEEEcccCC
Confidence            678899999999999988888999999999999998863 121       222 233344444  674 78899999976


Q ss_pred             CCCc-cchh---hhhhhHHHHhhcc---cceEEEeCcccCCChhH
Q 006490          129 GDHN-ATSL---EEVMGPIMQQFRE---IETCVECSATTMIQVPD  166 (643)
Q Consensus       129 ~~~~-~~~~---~~~~~~~~~~~~~---~~~~~~~Sa~~~~gi~~  166 (643)
                      .... ....   .+.++.+.++.+.   ..+++++||.+|.|+.+
T Consensus       159 ~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        159 TPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             chhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence            2110 0012   2334444444441   13689999999999864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	643
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		6e-08
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		6e-08
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		8e-08
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		1e-07
3bwd_D	182	Crystal Structure Of The Plant Rho Protein Rop5 Len		1e-07
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		1e-07
2j0v_A	212	The Crystal Structure Of Arabidopsis Thaliana Rac7-		2e-07
2nty_C	180	Rop4-Gdp-Prone8 Length = 180		2e-07
4fmc_B	171	Espg-Rab1 Complex Length = 171		2e-07
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		3e-07
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		3e-07
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		3e-07
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		5e-07
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		6e-07
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		7e-07
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		7e-07
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		2e-06
2wbl_C	180	Three-Dimensional Structure Of A Binary Rop-Prone C		2e-06
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		1e-05
4fmc_F	117	Espg-Rab1 Complex Length = 117		1e-05
1ryf_A	203	Alternative Splicing Of Rac1 Generates Rac1b, A Sel		6e-05
2w2t_A	185	Rac2 (G12v) In Complex With Gdp Length = 185		1e-04
2wkr_A	332	Structure Of A Photoactivatable Rac1 Containing The		1e-04
2wkq_A	332	Structure Of A Photoactivatable Rac1 Containing The		1e-04
2wkp_A	332	Structure Of A Photoactivatable Rac1 Containing Lov		1e-04
1ds6_A	192	Crystal Structure Of A Rac-Rhogdi Complex Length =		1e-04
1kmq_A	184	Crystal Structure Of A Constitutively Activated Rho		2e-04
1dpf_A	180	Crystal Structure Of A Mg-Free Form Of Rhoa Complex		2e-04
2atx_A	194	Crystal Structure Of The Tc10 Gppnhp Complex Length		2e-04
1lb1_B	192	Crystal Structure Of The Dbl And Pleckstrin Homolog		2e-04
3lw8_A	185	Shigella Ipgb2 In Complex With Human Rhoa, Gdp And		2e-04
1xcg_B	178	Crystal Structure Of Human Rhoa In Complex With DhP		3e-04
1cc0_A	190	Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le		3e-04
3msx_A	180	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		3e-04
1e96_A	192	Structure Of The RacP67PHOX COMPLEX Length = 192		3e-04
1s1c_A	183	Crystal Structure Of The Complex Between The Human		3e-04
1i4t_D	192	Crystal Structure Analysis Of Rac1-Gmppnp In Comple		3e-04
3kz1_E	182	Crystal Structure Of The Complex Of Pdz-Rhogef DhPH		3e-04
1ow3_B	193	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		3e-04
2bov_A	206	Molecular Recognition Of An Adp-Ribosylating Clostr		3e-04
1x86_B	196	Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A		3e-04
2vrw_A	184	Critical Structural Role For The Ph And C1 Domains		3e-04
1tx4_B	177	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177		3e-04
1u8y_A	168	Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal		3e-04
3tvd_A	193	Crystal Structure Of Mouse Rhoa-Gtp Complex Length		4e-04
1cxz_A	182	Crystal Structure Of Human Rhoa Complexed With The		4e-04
4f38_A	195	Crystal Structure Of Geranylgeranylated Rhoa In Com		4e-04
1i4d_D	192	Crystal Structure Analysis Of Rac1-Gdp Complexed Wi		4e-04
2w2v_A	184	Rac2 (G12v) In Complex With Gtpgs Length = 184		4e-04
1mh1_A	186	Small G-Protein Length = 186		4e-04
2a78_A	187	Crystal Structure Of The C3bot-Rala Complex Reveals		4e-04
1uad_A	175	Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi		4e-04
2j1l_A	214	Crystal Structure Of Human Rho-Related Gtp-Binding		4e-04
2h7v_A	188	Co-crystal Structure Of Ypka-rac1 Length = 188		4e-04
1g4u_R	184	Crystal Structure Of The Salmonella Tyrosine Phosph		5e-04
1hh4_A	192	Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ		5e-04
4gzl_A	204	Crystal Structure Of Rac1 Q61l Mutant Length = 204		5e-04
1gwn_A	205	The Crystal Structure Of The Core Domain Of RhoeRND		5e-04
2dpx_A	174	Crystal Structure Of Human Rad Gtpase Length = 174		5e-04
2gjs_A	176	The Crystal Structure Of Human Rrad In Complex With		6e-04
3ryt_C	180	The Plexin A1 Intracellular Region In Complex With		6e-04
1m7b_A	184	Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI		7e-04
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		7e-04
2gco_A	201	Crystal Structure Of The Human Rhoc-gppnhp Complex		8e-04
2fv8_A	207	The Crystal Structure Of Rhob In The Gdp-Bound Stat		8e-04

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 71/153 (46%), Gaps = 7/153 (4%)
Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
           +F+ LL G    GKS LL  F +  ++E+Y  T G  + +  ++  G   K  I     +
Sbjct: 9   LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 68
Query: 483 EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASK 542
           E  + I S+    A     I VYD +D+ S+   K+ L E+ R   ++   V  LL+ +K
Sbjct: 69  ERFRTITSSYYRGAHG--IIVVYDVTDQESYANVKQWLQEIDRYASEN---VNKLLVGNK 123
Query: 543 DDLKPYTMAVQDSAR-VTQELGIEPPIPVSMKS 574
            DL    +    +A+     LGI P +  S K+
Sbjct: 124 SDLTTKKVVDNTTAKEFADSLGI-PFLETSAKN 155

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 71/153 (46%), Gaps = 7/153 (4%)
Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
           +F+ LL G    GKS LL  F +  ++E+Y  T G  + +  ++  G   K  I     +
Sbjct: 9   LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 68
Query: 483 EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASK 542
           E  + I S+    A     I VYD +D+ S+   K+ L E+ R   ++   V  LL+ +K
Sbjct: 69  ERFRTITSSYYRGAHG--IIVVYDVTDQESYANVKQWLQEIDRYASEN---VNKLLVGNK 123
Query: 543 DDLKPYTMAVQDSAR-VTQELGIEPPIPVSMKS 574
            DL    +    +A+     LGI P +  S K+
Sbjct: 124 SDLTTKKVVDNTTAKEFADSLGI-PFLETSAKN 155

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score = 55.8 bits (133), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 45/163 (27%), Positives = 73/163 (44%), Gaps = 11/163 (6%)
Query: 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIP 481
           ++ + LL G    GKS LL  F+E  F+ ++  T G  + +  VD  G   K  I     
Sbjct: 2   SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAG 61
Query: 482 EEGVKKILSN--KEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLI 539
           +E  + I +   + A+      I VYD +DE ++   K+    V     D       LL+
Sbjct: 62  QERFRTITTAYYRGAMG----IILVYDITDERTFTNIKQWFKTVNEHANDEA---QLLLV 114
Query: 540 ASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVF 581
            +K D++   +       + +ELGI P I  S K+ D +N +F
Sbjct: 115 GNKSDMETRVVTADQGEALAKELGI-PFIESSAKNDDNVNEIF 156

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 46/177 (25%), Positives = 77/177 (43%), Gaps = 11/177 (6%)
Query: 408 RKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQ 467
           R  S      ++  ++ + LL G    GKS LL  F+E  F+ ++  T G  + +  VD 
Sbjct: 5   RTVSASSGNGKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDI 64
Query: 468 PGGNKKTLILQEIPEEGVKKILSN--KEALASCDVTIFVYDSSDEYSWKRTKELLVEVAR 525
            G   K  +     +E  + I +   + A+      I VYD +DE ++   K+    V  
Sbjct: 65  NGKKVKLQLWDTAGQERFRTITTAYYRGAMG----IILVYDVTDERTFTNIKQWFKTVNE 120
Query: 526 LGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVF 581
              D       LL+ +K D++   +       + +ELGI P I  S K+ D +N +F
Sbjct: 121 HANDEA---QLLLVGNKSDMETRVVTADQGEALAKELGI-PFIESSAKNDDNVNEIF 173

>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 7/105 (6%)
Query: 81  KRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH-------NA 133
           + AD  +L ++   +++   +S  W+PEL+     VPI++ G KLDLR D         A
Sbjct: 78  RGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGA 137
Query: 134 TSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHP 178
             +  V G  +++       +ECS+ +   V  VF  A + VL P
Sbjct: 138 VPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVLQP 182

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/163 (26%), Positives = 73/163 (44%), Gaps = 11/163 (6%)
Query: 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIP 481
           ++ + LL G    GKS LL  F+E  F+ ++  T G  + +  VD  G   K  +     
Sbjct: 6   SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAG 65
Query: 482 EEGVKKILSN--KEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLI 539
           +E  + I +   + A+      I VYD +DE ++   K+    V     D       LL+
Sbjct: 66  QERFRTITTAYYRGAMG----IILVYDVTDERTFTNIKQWFKTVNEHANDEA---QLLLV 118
Query: 540 ASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVF 581
            +K D++   +       + +ELGI P I  S K+ D +N +F
Sbjct: 119 GNKSDMETRVVTADQGEALAKELGI-PFIESSAKNDDNVNEIF 160

>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 5/101 (4%)
Query: 83  ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH-----NATSLE 137
           AD  VL ++   +++   +   W+PELRR    VPI++ G KLDLR D      +   + 
Sbjct: 81  ADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVIT 140
Query: 138 EVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHP 178
              G  +++       +ECS+ T   V  VF  A K VL P
Sbjct: 141 STQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 181

>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 7/105 (6%)
Query: 81  KRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH-------NA 133
           + AD  +L ++   +++   ++  W+PELR     VPII+ G KLDLR D         A
Sbjct: 76  RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGA 135
Query: 134 TSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHP 178
             +    G  +++       +ECS+ T   V  VF  A K VL P
Sbjct: 136 VPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVFDAAIKVVLQP 180

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 71/153 (46%), Gaps = 7/153 (4%)
Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
           +F+ LL G    GKS LL  F +  ++E+Y  T G  + +  ++  G   K  I     +
Sbjct: 6   LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 65
Query: 483 EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASK 542
           E  + I S+    A     I VYD +D+ S+   K+ L E+ R   ++   V  LL+ +K
Sbjct: 66  ERFRTITSSYYRGAHG--IIVVYDVTDQESFNNVKQWLQEIDRYASEN---VNKLLVGNK 120
Query: 543 DDLKPYTMAVQDSAR-VTQELGIEPPIPVSMKS 574
            DL    +    +A+     LGI P +  S K+
Sbjct: 121 CDLTTKKVVDYTTAKEFADSLGI-PFLETSAKN 152

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 71/153 (46%), Gaps = 7/153 (4%)
Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
           +F+ LL G    GKS LL  F +  ++E+Y  T G  + +  ++  G   K  I     +
Sbjct: 6   LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 65
Query: 483 EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASK 542
           E  + I S+    A     I VYD +D+ S+   K+ L E+ R   ++   V  LL+ +K
Sbjct: 66  ERFRTITSSYYRGAHG--IIVVYDVTDQESFNNVKQWLQEIDRYASEN---VNKLLVGNK 120
Query: 543 DDLKPYTMAVQDSAR-VTQELGIEPPIPVSMKS 574
            DL    +    +A+     LGI P +  S K+
Sbjct: 121 CDLTTKKVVDYTTAKEFADSLGI-PFLETSAKN 152

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 71/153 (46%), Gaps = 7/153 (4%)
Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
           +F+ LL G    GKS LL  F +  ++E+Y  T G  + +  ++  G   K  I     +
Sbjct: 25  LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 84
Query: 483 EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASK 542
           E  + I S+    A     I VYD +D+ S+   K+ L E+ R   ++   V  LL+ +K
Sbjct: 85  ERFRTITSSYYRGAHG--IIVVYDVTDQESFNNVKQWLQEIDRYASEN---VNKLLVGNK 139
Query: 543 DDLKPYTMAVQDSAR-VTQELGIEPPIPVSMKS 574
            DL    +    +A+     LGI P +  S K+
Sbjct: 140 CDLTTKKVVDYTTAKEFADSLGI-PFLETSAKN 171

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 45/161 (27%), Positives = 70/161 (43%), Gaps = 7/161 (4%)
Query: 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIP 481
           ++ + LL G    GKS LL  F+E  F+ ++  T G  + +  VD  G   K  I     
Sbjct: 2   SIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAG 61
Query: 482 EEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIAS 541
           +E  + I +     A     I VYD +DE ++   K+    V     D       LL+ +
Sbjct: 62  QERFRTITTAYYRGAXG--IILVYDITDERTFTNIKQWFKTVNEHANDEA---QLLLVGN 116
Query: 542 KDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVF 581
           K D +   +       + +ELGI P I  S K+ D +N +F
Sbjct: 117 KSDXETRVVTADQGEALAKELGI-PFIESSAKNDDNVNEIF 156

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 71/153 (46%), Gaps = 7/153 (4%)
Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
           +F+ LL G    GKS LL  F +  ++E+Y  T G  + +  ++  G   K  I     +
Sbjct: 16  LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 75
Query: 483 EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASK 542
           E  + I S+    A     I VYD +D+ S+   K+ L E+ R   ++   V  LL+ +K
Sbjct: 76  ERFRTITSSYYRGAHG--IIVVYDVTDQESFNNVKQWLQEIDRYASEN---VNKLLVGNK 130
Query: 543 DDLKPYTMAVQDSAR-VTQELGIEPPIPVSMKS 574
            DL    +    +A+     LGI P +  S K+
Sbjct: 131 CDLTTKKVVDYTTAKEFADSLGI-PFLETSAKN 162

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 44/161 (27%), Positives = 70/161 (43%), Gaps = 7/161 (4%)
Query: 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIP 481
           ++ + LL G    GKS LL  F+E  F+ ++  T G  + +  VD  G   K  +     
Sbjct: 2   SIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAG 61
Query: 482 EEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIAS 541
           +E  + I +     A     I VYD +DE ++   K+    V     D       LL+ +
Sbjct: 62  QERFRTITTAYYRGAXG--IILVYDVTDERTFTNIKQWFKTVNEHANDEA---QLLLVGN 116
Query: 542 KDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVF 581
           K D +   +       + +ELGI P I  S K+ D +N +F
Sbjct: 117 KSDXETRVVTADQGEALAKELGI-PFIESSAKNDDNVNEIF 156

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 70/153 (45%), Gaps = 7/153 (4%)
Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
           +F+ LL G    GKS LL  F +  ++E+Y  T G  + +  ++  G   K  I     +
Sbjct: 8   LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 67
Query: 483 EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASK 542
           E  + I S+    A     I VYD +D+ S+   K+ L E+ R   ++   V  LL+  K
Sbjct: 68  ERFRTITSSYYRGAHG--IIVVYDVTDQESFNNVKQWLQEIDRYASEN---VNKLLVGIK 122
Query: 543 DDLKPYTMAVQDSAR-VTQELGIEPPIPVSMKS 574
            DL    +    +A+     LGI P +  S K+
Sbjct: 123 CDLTTKKVVDYTTAKEFADSLGI-PFLETSAKN 154

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 71/153 (46%), Gaps = 7/153 (4%)
Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
           +F+ LL G    GK+ LL  F +  ++E+Y  T G  + +  ++  G   K  I     +
Sbjct: 16  LFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 75
Query: 483 EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASK 542
           E  + I S+    A     I VYD +D+ S+   K+ L E+ R   ++   V  LL+ +K
Sbjct: 76  ERFRTITSSYYRGAHG--IIVVYDVTDQESFNNVKQWLQEIDRYASEN---VNKLLVGNK 130
Query: 543 DDLKPYTMAVQDSAR-VTQELGIEPPIPVSMKS 574
            DL    +    +A+     LGI P +  S K+
Sbjct: 131 CDLTTKKVVDYTTAKEFADSLGI-PFLETSAKN 162

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/153 (28%), Positives = 71/153 (46%), Gaps = 7/153 (4%)
Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
           +F+ LL G    GKS LL  F +  ++E+Y  T G  + +  ++  G   K  I     +
Sbjct: 33  LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 92
Query: 483 EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASK 542
           E  + I S+    A     I VYD +D+ S+   K+ L E+ R   ++   V  LL+ +K
Sbjct: 93  ERFRTITSSYYRGAHG--IIVVYDVTDQESFNNVKQWLQEIDRYASEN---VNKLLVGNK 147
Query: 543 DDLKPYTMAVQDSAR-VTQELGIEPPIPVSMKS 574
            DL    +    +A+     LGI P +  S K+
Sbjct: 148 CDLTTKKVVDYTTAKEFADSLGI-PFLETSAKN 179

>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 7/105 (6%)
Query: 81  KRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH-------NA 133
           + AD  +L ++   +++   +   WLPEL+     +PI++ G KLDLR D         A
Sbjct: 76  RGADVFLLAFSLISKASYENIHKKWLPELKHYAPGIPIVLVGTKLDLRDDKQFLKDHPGA 135
Query: 134 TSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHP 178
            S+    G  +++       +ECS+ T   V  VF  A +  L P
Sbjct: 136 ASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVFDTAIRVALRP 180

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/151 (28%), Positives = 69/151 (45%), Gaps = 7/151 (4%)
Query: 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG 484
           + LL G    GKS LL  F +  ++E+Y  T G  + +  ++  G   K  I     +E 
Sbjct: 1   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 485 VKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDD 544
            + I S+    A     I VYD +D+ S+   K+ L E+ R   ++   V  LL+ +K D
Sbjct: 61  FRTITSSYYRGAHG--IIVVYDVTDQESFNNVKQWLQEIDRYASEN---VNKLLVGNKCD 115
Query: 545 LKPYTMAVQDSAR-VTQELGIEPPIPVSMKS 574
           L    +    +A+     LGI P +  S K+
Sbjct: 116 LTTKKVVDYTTAKEFADSLGI-PFLETSAKN 145

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 56/119 (47%), Gaps = 5/119 (4%)
Query: 427 LLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK 486
           LL G    GKS LL  F +  ++E+Y  T G  + +  ++  G   K  I     +E  +
Sbjct: 2   LLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFR 61
Query: 487 KILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDL 545
            I S+    A     I VYD +D+ S+   K+ L E+ R   ++   V  LL+ +K DL
Sbjct: 62  TITSSYYRGAHG--IIVVYDVTDQESFNNVKQWLQEIDRYASEN---VNKLLVGNKCDL 115

>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A Self-Activating Gtpase Length = 203

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 64/139 (46%), Gaps = 15/139 (10%)
Query: 49  RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPE 108
           RL P  YP  V  T       + ++GK   +   AD  ++ ++    ++   + + W PE
Sbjct: 68  RLRPLSYPQTVGETY---GKDITSRGK---DKPIADVFLICFSLVSPASFENVRAKWYPE 121
Query: 109 LRRLEIKVPIIVAGCKLDLRGDHNATS--LEEVMGPI-----MQQFREIETC--VECSAT 159
           +R      PII+ G KLDLR D +      E+ + PI     +   +EI     +ECSA 
Sbjct: 122 VRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 181
Query: 160 TMIQVPDVFYYAQKAVLHP 178
           T   +  VF  A +AVL P
Sbjct: 182 TQRGLKTVFDEAIRAVLCP 200

>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp Length = 185

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 9/106 (8%)
Query: 82  RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
           + D  ++ ++    ++   + + W PE+R      PII+ G KLDLR D +      E+ 
Sbjct: 80  QTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDKDTIEKLKEKK 139
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVLHP 178
           + PI     +   +EI++   +ECSA T   +  VF  A +AVL P
Sbjct: 140 LAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCP 185

>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 76/166 (45%), Gaps = 14/166 (8%)
Query: 25  KSSLIAAAATESVP-EKVPPVHAPTRLPPDFYPDRVPVTI-IDTSSSLENKGKLNE-ELK 81
           K+ L+ +  T + P E +P V        +   D  PV + +  ++ LE+  +L      
Sbjct: 168 KTCLLISYTTNAFPGEYIPTVF--DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYP 225
Query: 82  RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
           + D  ++ ++    ++   + + W PE+R      PII+ G KLDLR D +      E+ 
Sbjct: 226 QTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 285
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVLHP 178
           + PI     +   +EI     +ECSA T   +  VF  A +AVL P
Sbjct: 286 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 331

>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 76/166 (45%), Gaps = 14/166 (8%)
Query: 25  KSSLIAAAATESVP-EKVPPVHAPTRLPPDFYPDRVPVTI-IDTSSSLENKGKLNE-ELK 81
           K+ L+ +  T + P E +P V        +   D  PV + +  ++ LE+  +L      
Sbjct: 168 KTCLLISYTTNAFPGEYIPTVF--DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYP 225
Query: 82  RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
           + D  ++ ++    ++   + + W PE+R      PII+ G KLDLR D +      E+ 
Sbjct: 226 QTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 285
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVLHP 178
           + PI     +   +EI     +ECSA T   +  VF  A +AVL P
Sbjct: 286 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 331

>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 76/166 (45%), Gaps = 14/166 (8%)
Query: 25  KSSLIAAAATESVP-EKVPPVHAPTRLPPDFYPDRVPVTI-IDTSSSLENKGKLNE-ELK 81
           K+ L+ +  T + P E +P V        +   D  PV + +  ++ LE+  +L      
Sbjct: 168 KTCLLISYTTNAFPGEYIPTVF--DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYP 225
Query: 82  RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
           + D  ++ ++    ++   + + W PE+R      PII+ G KLDLR D +      E+ 
Sbjct: 226 QTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 285
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVLHP 178
           + PI     +   +EI     +ECSA T   +  VF  A +AVL P
Sbjct: 286 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 331

>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex Length = 192

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 9/106 (8%)
Query: 82  RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
           + D  ++ ++    ++   + + W PE+R      PII+ G KLDLR D +      E+ 
Sbjct: 74  QTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDKDTIEKLKEKK 133
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVLHP 178
           + PI     +   +EI++   +ECSA T   +  VF  A +AVL P
Sbjct: 134 LAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCP 179

>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa Mutant (Q63l) Length = 184

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 84  DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----ATSLEE 138
           D +++ ++ +   +L  +   W PE++     VPII+ G K DLR D +     A   +E
Sbjct: 81  DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQE 140
Query: 139 VMGPIMQQFREIETCV------ECSATTMIQVPDVFYYAQKAVLH 177
            + P  ++ R++   +      ECSA T   V +VF  A +A L 
Sbjct: 141 PVKP--EEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 183

>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With Gdp Length = 180

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 9/103 (8%)
Query: 84  DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD-HNATSLEEVM-- 140
           D +++ ++ +   +L  +   W PE++     VPII+ G K DLR D H A  L ++   
Sbjct: 78  DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTARELAKMKQE 137
Query: 141 ------GPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLH 177
                 G  M         +ECSA T   V +VF  A +A L 
Sbjct: 138 PVKPAEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180

>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex Length = 194

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 80/184 (43%), Gaps = 22/184 (11%)
Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIP- 481
           + +C++ G    GK+ LL S+    F E Y PT  + YAV+V    GG +  L L +   
Sbjct: 18  MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVT--VGGKQYLLGLYDTAG 75
Query: 482 EEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIAS 541
           +E   ++      +   DV +  +   +  S++  KE  V   +   +    VP LLI +
Sbjct: 76  QEDYDRLRPLSYPMT--DVFLICFSVVNPASFQNVKEEWVPELK---EYAPNVPFLLIGT 130
Query: 542 KDDLK--PYTMA-----------VQDSARVTQELGIEPPIPVS-MKSKDLNNVFSRIIWA 587
           + DL+  P T+A           V+   ++ +E+G    +  S +  K L  VF   I A
Sbjct: 131 QIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIA 190
Query: 588 AEHP 591
              P
Sbjct: 191 ILTP 194

>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 192

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 84  DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----ATSLEE 138
           D +++ ++ +   +L  +   W PE++     VPII+ G K DLR D +     A   +E
Sbjct: 80  DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQE 139
Query: 139 VMGPIMQQFREIETCV------ECSATTMIQVPDVFYYAQKAVLH 177
            + P  ++ R++   +      ECSA T   V +VF  A +A L 
Sbjct: 140 PVKP--EEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 182

>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 84  DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----ATSLEE 138
           D +++ ++ +   +L  +   W PE++     VPII+ G K DLR D +     A   +E
Sbjct: 82  DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQE 141
Query: 139 VMGPIMQQFREIETCV------ECSATTMIQVPDVFYYAQKAVLH 177
            + P  ++ R++   +      ECSA T   V +VF  A +A L 
Sbjct: 142 PVKP--EEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 184

>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 178

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 84  DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----ATSLEE 138
           D +++ ++ +   +L  +   W PE++     VPII+ G K DLR D +     A   +E
Sbjct: 76  DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQE 135
Query: 139 VMGPIMQQFREIETCV------ECSATTMIQVPDVFYYAQKAVLH 177
            + P  ++ R++   +      ECSA T   V +VF  A +A L 
Sbjct: 136 PVKP--EEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 178

>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 190

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 84  DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----ATSLEE 138
           D +++ ++ +   +L  +   W PE++     VPII+ G K DLR D +     A   +E
Sbjct: 78  DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQE 137
Query: 139 VMGPIMQQFREIETCV------ECSATTMIQVPDVFYYAQKAVLH 177
            + P  ++ R++   +      ECSA T   V +VF  A +A L 
Sbjct: 138 PVKP--EEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180

>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 180

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 84  DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----ATSLEE 138
           D +++ ++ +   +L  +   W PE++     VPII+ G K DLR D +     A   +E
Sbjct: 78  DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQE 137
Query: 139 VMGPIMQQFREIETCV------ECSATTMIQVPDVFYYAQKAVLH 177
            + P  ++ R++   +      ECSA T   V +VF  A +A L 
Sbjct: 138 PVKP--EEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180

>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 76/166 (45%), Gaps = 14/166 (8%)
Query: 25  KSSLIAAAATESVP-EKVPPVHAPTRLPPDFYPDRVPVTI-IDTSSSLENKGKLNE-ELK 81
           K+ L+ +  T + P E +P V        +   D  PV + +  ++ LE+  +L      
Sbjct: 16  KTCLLISYTTNAFPGEYIPTVF--DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYP 73
Query: 82  RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
           + D  ++ ++    ++   + + W PE+R      PII+ G KLDLR D +      E+ 
Sbjct: 74  QTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 133
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVLHP 178
           + PI     +   +EI     +ECSA T   +  VF  A +AVL P
Sbjct: 134 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 179

>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa And Rho-Binding Domain Of Human Rocki Length = 183

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 84  DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----ATSLEE 138
           D +++ ++ +   +L  +   W PE++     VPII+ G K DLR D +     A   +E
Sbjct: 80  DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQE 139
Query: 139 VMGPIMQQFREIETCV------ECSATTMIQVPDVFYYAQKAVLH 177
            + P  ++ R++   +      ECSA T   V +VF  A +A L 
Sbjct: 140 PVKP--EEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 182

>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 76/166 (45%), Gaps = 14/166 (8%)
Query: 25  KSSLIAAAATESVP-EKVPPVHAPTRLPPDFYPDRVPVTI-IDTSSSLENKGKLNE-ELK 81
           K+ L+ +  T + P E +P V        +   D  PV + +  ++ LE+  +L      
Sbjct: 16  KTCLLISYTTNAFPGEYIPTVF--DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYP 73
Query: 82  RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
           + D  ++ ++    ++   + + W PE+R      PII+ G KLDLR D +      E+ 
Sbjct: 74  QTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 133
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVLHP 178
           + PI     +   +EI     +ECSA T   +  VF  A +AVL P
Sbjct: 134 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 179

>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 182

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 84  DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----ATSLEE 138
           D +++ ++ +   +L  +   W PE++     VPII+ G K DLR D +     A   +E
Sbjct: 79  DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQE 138
Query: 139 VMGPIMQQFREIETCV------ECSATTMIQVPDVFYYAQKAVLH 177
            + P  ++ R++   +      ECSA T   V +VF  A +A L 
Sbjct: 139 PVKP--EEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 181

>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 193

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 84  DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----ATSLEE 138
           D +++ ++ +   +L  +   W PE++     VPII+ G K DLR D +     A   +E
Sbjct: 78  DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQE 137
Query: 139 VMGPIMQQFREIETCV------ECSATTMIQVPDVFYYAQKAVLH 177
            + P  ++ R++   +      ECSA T   V +VF  A +A L 
Sbjct: 138 PVKP--EEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180

>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 5/136 (3%)
Query: 411 SVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGG 470
           + ++ K Q    + + ++ G    GKSAL   F+   F E+Y PT  + Y   VV   G 
Sbjct: 2   AANKPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGE 60
Query: 471 NKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDS 530
             +  IL    +E    I  N     S +  + V+  ++  S+  T +   ++ R+ ED 
Sbjct: 61  EVQIDILDTAGQEDYAAIRDN--YFRSGEGFLCVFSITEMESFAATADFREQILRVKEDE 118
Query: 531 GYGVPCLLIASKDDLK 546
              VP LL+ +K DL+
Sbjct: 119 --NVPFLLVGNKSDLE 132

>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 84  DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----ATSLEE 138
           D +++ ++ +   +L  +   W PE++     VPII+ G K DLR D +     A   +E
Sbjct: 81  DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQE 140
Query: 139 VMGPIMQQFREIETCV------ECSATTMIQVPDVFYYAQKAVLH 177
            + P  ++ R++   +      ECSA T   V +VF  A +A L 
Sbjct: 141 PVKP--EEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 183

>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 9/106 (8%)
Query: 82  RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
           + D  ++ ++    ++   + + W PE+R      PII+ G KLDLR D +      E+ 
Sbjct: 74  QTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 133
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVLHP 178
           + PI     +   +EI     +ECSA T   +  VF  A +AVL P
Sbjct: 134 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 179

>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 13/104 (12%)
Query: 84  DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----ATSLEE 138
           D +++ ++ +   +L  +   W PE++     VPII+ G K DLR D +     A   +E
Sbjct: 76  DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQE 135
Query: 139 VMGPIMQQFREIETCV------ECSATTMIQVPDVFYYAQKAVL 176
            + P  ++ R++   +      ECSA T   V +VF  A +A L
Sbjct: 136 PVKP--EEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 177

>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 56/122 (45%), Gaps = 5/122 (4%)
Query: 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG 484
           + ++ G    GKSAL   F+   F E+Y PT  + Y   VV   G   +  IL    +E 
Sbjct: 6   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQED 64
Query: 485 VKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDD 544
              I  N     S +  + V+  ++  S+  T +   ++ R+ ED    VP LL+ +K D
Sbjct: 65  YAAIRDN--YFRSGEGFLCVFSITEMESFAATADFREQILRVKEDE--NVPFLLVGNKSD 120
Query: 545 LK 546
           L+
Sbjct: 121 LE 122

>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex Length = 193

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 84  DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----ATSLEE 138
           D +++ ++ +   +L  +   W PE++     VPII+ G K DLR D +     A   +E
Sbjct: 78  DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQE 137
Query: 139 VMGPIMQQFREIETCV------ECSATTMIQVPDVFYYAQKAVLH 177
            + P  ++ R++   +      ECSA T   V +VF  A +A L 
Sbjct: 138 PVKP--EEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180

>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The Effector Domain Of The Protein Kinase PknPRK1 Length = 182

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 84  DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----ATSLEE 138
           D +++ ++ +   +L  +   W PE++     VPII+ G K DLR D +     A   +E
Sbjct: 79  DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQE 138
Query: 139 VMGPIMQQFREIETCV------ECSATTMIQVPDVFYYAQKAVLH 177
            + P  ++ R++   +      ECSA T   V +VF  A +A L 
Sbjct: 139 PVKP--EEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 181

>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 195

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 84  DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----ATSLEE 138
           D +++ ++ +   +L  +   W PE++     VPII+ G K DLR D +     A   +E
Sbjct: 80  DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQE 139
Query: 139 VMGPIMQQFREIETCV------ECSATTMIQVPDVFYYAQKAVLH 177
            + P  ++ R++   +      ECSA T   V +VF  A +A L 
Sbjct: 140 PVKP--EEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 182

>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 9/106 (8%)
Query: 82  RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
           + D  ++ ++    ++   + + W PE+R      PII+ G KLDLR D +      E+ 
Sbjct: 74  QTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 133
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVLHP 178
           + PI     +   +EI     +ECSA T   +  VF  A +AVL P
Sbjct: 134 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 179

>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs Length = 184

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 9/104 (8%)
Query: 82  RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
           + D  ++ ++    ++   + + W PE+R      PII+ G KLDLR D +      E+ 
Sbjct: 81  QTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDKDTIEKLKEKK 140
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVL 176
           + PI     +   +EI++   +ECSA T   +  VF  A +AVL
Sbjct: 141 LAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVL 184

>pdb|1MH1|A Chain A, Small G-Protein Length = 186

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 9/106 (8%)
Query: 82  RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
           + D  ++ ++    ++   + + W PE+R      PII+ G KLDLR D +      E+ 
Sbjct: 76  QTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 135
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVLHP 178
           + PI     +   +EI     +ECSA T   +  VF  A +AVL P
Sbjct: 136 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 181

>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 56/122 (45%), Gaps = 5/122 (4%)
Query: 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG 484
           + ++ G    GKSAL   F+   F E+Y PT  + Y   VV   G   +  IL    +E 
Sbjct: 20  KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQED 78
Query: 485 VKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDD 544
              I  N     S +  + V+  ++  S+  T +   ++ R+ ED    VP LL+ +K D
Sbjct: 79  YAAIRDN--YFRSGEGFLCVFSITEMESFAATADFREQILRVKEDE--NVPFLLVGNKSD 134
Query: 545 LK 546
           L+
Sbjct: 135 LE 136

>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 56/122 (45%), Gaps = 5/122 (4%)
Query: 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG 484
           + ++ G    GKSAL   F+   F E+Y PT  + Y   VV   G   +  IL    +E 
Sbjct: 8   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQED 66
Query: 485 VKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDD 544
              I  N     S +  + V+  ++  S+  T +   ++ R+ ED    VP LL+ +K D
Sbjct: 67  YAAIRDN--YFRSGEGFLCVFSITEMESFAATADFREQILRVKEDE--NVPFLLVGNKSD 122
Query: 545 LK 546
           L+
Sbjct: 123 LE 124

>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 52/137 (37%), Gaps = 34/137 (24%)
Query: 49  RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPE 108
           RL P FYPD                         A  ++L +     ++   + + W PE
Sbjct: 97  RLRPLFYPD-------------------------ASVLLLCFDVTSPNSFDNIFNRWYPE 131
Query: 109 LRRLEIKVPIIVAGCKLDLRGDHNATS------LEEVM---GPIMQQFREIETCVECSAT 159
           +     KVPIIV GCK DLR D +  +      LE V    G  M +       +ECSA 
Sbjct: 132 VNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSAR 191
Query: 160 TMIQVPDVFYYAQKAVL 176
               V  VF  A +  L
Sbjct: 192 LHDNVHAVFQEAAEVAL 208

>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 9/106 (8%)
Query: 82  RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
           + D  ++ ++    ++   + + W PE+R      PII+ G KLDLR D +      E+ 
Sbjct: 78  QTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 137
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVLHP 178
           + PI     +   +EI     +ECSA T   +  VF  A +AVL P
Sbjct: 138 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 183

>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 9/106 (8%)
Query: 82  RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
           + D  ++ ++    ++   + + W PE+R      PII+ G KLDLR D +      E+ 
Sbjct: 74  QTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 133
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVLHP 178
           + PI     +   +EI     +ECSA T   +  VF  A +AVL P
Sbjct: 134 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 179

>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 9/106 (8%)
Query: 82  RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
           + D  ++ ++    ++   + + W PE+R      PII+ G KLDLR D +      E+ 
Sbjct: 74  QTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 133
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVLHP 178
           + PI     +   +EI     +ECSA T   +  VF  A +AVL P
Sbjct: 134 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 179

>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 75/164 (45%), Gaps = 14/164 (8%)
Query: 25  KSSLIAAAATESVP-EKVPPVHAPTRLPPDFYPDRVPVTI-IDTSSSLENKGKLNE-ELK 81
           K+ L+ +  T + P E +P V        +   D  PV + +  ++ LE+  +L      
Sbjct: 43  KTCLLISYTTNAFPGEYIPTVF--DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYP 100
Query: 82  RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
           + D  ++ ++    ++   + + W PE+R      PII+ G KLDLR D +      E+ 
Sbjct: 101 QTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 160
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVL 176
           + PI     +   +EI     +ECSA T   +  VF  A +AVL
Sbjct: 161 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204

>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 70/164 (42%), Gaps = 11/164 (6%)
Query: 25  KSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRA 83
           K++L+   A +  PE  VP V        +    R+ +++ DTS S             +
Sbjct: 41  KTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDS 100
Query: 84  DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD---------HNAT 134
           DAV++ +  ++  TL  +   W  E++       +++ GCK DLR D         H  T
Sbjct: 101 DAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQT 160
Query: 135 SLEEVMGPIMQQFREIETCVECSA-TTMIQVPDVFYYAQKAVLH 177
            +    G  M +     T +ECSA  +   V D+F+ A  A ++
Sbjct: 161 PVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 204

>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase Length = 174

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 16/132 (12%)
Query: 419 TERNVFRCLLFGPQNAGKSALLNSFL---ERPFSENYAPTTGEQYAVNVVDQPGGNKKTL 475
           ++ +V++ LL G    GKSAL   F    + P +E    T      V+      G + +L
Sbjct: 3   SDESVYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVD------GEEASL 56
Query: 476 ILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEV--ARLGEDSGYG 533
           ++ +I E+   + L     +A  D  + VY  +D+ S+++  EL V++  AR  +D    
Sbjct: 57  MVYDIWEQDGGRWLPG-HCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDD---- 111
Query: 534 VPCLLIASKDDL 545
           VP +L+ +K DL
Sbjct: 112 VPIILVGNKSDL 123

>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp Length = 176

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 16/132 (12%)
Query: 419 TERNVFRCLLFGPQNAGKSALLNSFL---ERPFSENYAPTTGEQYAVNVVDQPGGNKKTL 475
           ++ +V++ LL G    GKSAL   F    + P +E    T      V+      G + +L
Sbjct: 3   SDESVYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVD------GEEASL 56
Query: 476 ILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEV--ARLGEDSGYG 533
           ++ +I E+   + L     +A  D  + VY  +D+ S+++  EL V++  AR  +D    
Sbjct: 57  MVYDIWEQDGGRWLPG-HCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDD---- 111
Query: 534 VPCLLIASKDDL 545
           VP +L+ +K DL
Sbjct: 112 VPIILVGNKSDL 123

>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 75/164 (45%), Gaps = 14/164 (8%)
Query: 25  KSSLIAAAATESVP-EKVPPVHAPTRLPPDFYPDRVPVTI-IDTSSSLENKGKLNE-ELK 81
           K+ L+ +  T + P E +P V        +   D  PV + +  ++ LE+  +L      
Sbjct: 19  KTCLLISYTTNAFPGEYIPTVF--DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYP 76
Query: 82  RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
           + D  ++ ++    ++   + + W PE+R      PII+ G KLDLR D +      E+ 
Sbjct: 77  QTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 136
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVL 176
           + PI     +   +EI     +ECSA T   +  VF  A +AVL
Sbjct: 137 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 180

>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 70/164 (42%), Gaps = 11/164 (6%)
Query: 25  KSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRA 83
           K++L+   A +  PE  VP V        +    R+ +++ DTS S             +
Sbjct: 20  KTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDS 79
Query: 84  DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD---------HNAT 134
           DAV++ +  ++  TL  +   W  E++       +++ GCK DLR D         H  T
Sbjct: 80  DAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQT 139
Query: 135 SLEEVMGPIMQQFREIETCVECSA-TTMIQVPDVFYYAQKAVLH 177
            +    G  M +     T +ECSA  +   V D+F+ A  A ++
Sbjct: 140 PVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 183

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 62/141 (43%), Gaps = 8/141 (5%)
Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
           +F+ L+ G    GKS LL+ F+E  F ++   T G ++   VV+  G   KT+ LQ    
Sbjct: 25  LFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGG---KTVKLQIWDT 81
Query: 483 EGVKKILS-NKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIAS 541
            G ++  S  +         + VYD +   ++      L +   L   +   +  +L  +
Sbjct: 82  AGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPN---IVVILCGN 138
Query: 542 KDDLKP-YTMAVQDSARVTQE 561
           K DL P   +   +++R  QE
Sbjct: 139 KKDLDPEREVTFLEASRFAQE 159

>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex Length = 201

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 9/103 (8%)
Query: 84  DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD-HNATSLEEV-MG 141
           D +++ ++ +   +L  +   W PE++     VPII+ G K DLR D H    L ++   
Sbjct: 98  DVILMCFSIDSPDSLENIPEKWTPEVKHFXPNVPIILVGNKKDLRQDEHTRRELAKMKQE 157
Query: 142 PIM-QQFREIETCV------ECSATTMIQVPDVFYYAQKAVLH 177
           P+  ++ R++   +      ECSA T   V +VF  A +A L 
Sbjct: 158 PVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ 200

>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State Length = 207

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 9/103 (8%)
Query: 84  DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD-HNATSLEEVM-- 140
           D +++ ++ +   +L  +   W+PE++     VPII+   K DLR D H  T L  +   
Sbjct: 98  DVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQE 157
Query: 141 ------GPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLH 177
                 G  M    +    +ECSA T   V +VF  A +A L 
Sbjct: 158 PVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQ 200

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	643
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	6e-24
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	2e-04
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	1e-22
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	1e-04
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	2e-22
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	6e-05
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	5e-22
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	5e-04
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	6e-22
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	2e-04
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	1e-21
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	1e-04
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	5e-21
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	2e-04
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	7e-21
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	1e-20
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	2e-05
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	4e-20
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	2e-04
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	6e-20
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	3e-04
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	1e-19
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	1e-05
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	4e-19
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	3e-04
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	4e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-10
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	4e-07
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	6e-07
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	2e-04
2ged_A	193	SR-beta, signal recognition particle receptor beta	9e-07
2fh5_B	214	SR-beta, signal recognition particle receptor beta	1e-06
1nrj_B	218	SR-beta, signal recognition particle receptor beta	1e-06
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	1e-06
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	3e-05
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	2e-06
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	2e-04
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	2e-06
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	7e-05
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	2e-06
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	5e-05
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	2e-06
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	9e-06
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	3e-06
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	3e-06
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	3e-06
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	5e-04
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	3e-06
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	4e-05
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	7e-06
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	2e-05
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	2e-05
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	3e-05
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	4e-05
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	5e-05
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	4e-04
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	6e-05
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	6e-05
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	4e-04
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	7e-05
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	7e-05
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	1e-04
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	1e-04
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	5e-04
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	1e-04
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	1e-04
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	3e-04
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	1e-04
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	1e-04
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	1e-04
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	2e-04
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	1e-04
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	2e-04
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	2e-04
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	2e-04
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	2e-04
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	2e-04
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	2e-04
3llu_A	196	RAS-related GTP-binding protein C; structural geno	3e-04
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	3e-04
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	3e-04
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	3e-04
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	3e-04
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	4e-04
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	4e-04
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	6e-04
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	9e-04
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	9e-04

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score = 98.6 bits (246), Expect = 6e-24
 Identities = 51/195 (26%), Positives = 82/195 (42%), Gaps = 33/195 (16%)

Query: 4   GSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT---RLPPDFYPDRVP 60
           GS S+SR  ++ V VGD   GK+ L+ +  +       P  + PT       +   +   
Sbjct: 1   GSMSASRF-IKCVTVGDGAVGKTCLLISYTSN----TFPTDYVPTVFDNFSANVVVNGAT 55

Query: 61  VT--IIDTSSSLENKGKLNEELKR--------ADAVVLTYACNQQSTLSRLSSYWLPELR 110
           V   + DT+          E+  R        AD  +L ++   +++   +S  W+PEL+
Sbjct: 56  VNLGLWDTAGQ--------EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK 107

Query: 111 RLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIM----QQF-REIETC--VECSATTMIQ 163
                VPI++ G KLDLR D           PI     ++  + I     +ECS+ +   
Sbjct: 108 HYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQEN 167

Query: 164 VPDVFYYAQKAVLHP 178
           V  VF  A + VL P
Sbjct: 168 VKGVFDAAIRVVLQP 182

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 42/186 (22%), Positives = 70/186 (37%), Gaps = 30/186 (16%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLIL-----Q 478
            +C+  G    GK+ LL S+    F  +Y PT  + ++ NV     G    L L     Q
Sbjct: 9   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANV--VVNGATVNLGLWDTAGQ 66

Query: 479 EIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKEL-LVEVARLGEDSGYGVPCL 537
           E  +    + LS + A    DV I  +    + S++   +  + E+         GVP +
Sbjct: 67  E--DYNRLRPLSYRGA----DVFILAFSLISKASYENVSKKWIPELKHYAP----GVPIV 116

Query: 538 LIASKDDL-----------KPYTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVFSRII 585
           L+ +K DL               +       + + +G    I  S KS++ +  VF   I
Sbjct: 117 LVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAI 176

Query: 586 WAAEHP 591
                P
Sbjct: 177 RVVLQP 182

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score = 95.2 bits (237), Expect = 1e-22
 Identities = 54/200 (27%), Positives = 82/200 (41%), Gaps = 30/200 (15%)

Query: 2   PGGSGSSSRTG------VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFY 55
           PG  G   R G      V+ V+VGD   GK+SL+ +  T   P      + PT    D +
Sbjct: 4   PGEPGGRGRAGGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPT----EYIPTAF--DNF 57

Query: 56  PDRVPV-------TIIDTSSSLENKGKLNEEL-KRADAVVLTYACNQQSTLSRLSSYWLP 107
              V V        + DT+   +   KL        D  +L ++    S+   +S  W+P
Sbjct: 58  SAVVSVDGRPVRLQLCDTAGQ-DEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVP 116

Query: 108 ELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMG--PIMQQF-----REI--ETCVECSA 158
           E+R    K PII+ G + DLR D       +     P+ ++       EI   + +ECSA
Sbjct: 117 EIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSA 176

Query: 159 TTMIQVPDVFYYAQKAVLHP 178
            T   + +VF  A  A +  
Sbjct: 177 LTQKNLKEVFDAAIVAGIQY 196

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 36/196 (18%), Positives = 69/196 (35%), Gaps = 29/196 (14%)

Query: 414 RKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKK 473
           R      R V +C+L G    GK++L+ S+    +   Y PT  + ++  V     G   
Sbjct: 12  RAGGAEGRGV-KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVV--SVDGRPV 68

Query: 474 TLILQEIP-EEGVKKI--LSNKEALASCDVTIFVYDSSDEYSWKRTKEL-LVEVARLGED 529
            L L +   ++   K+  L         D+ +  +      S++   E  + E+      
Sbjct: 69  RLQLCDTAGQDEFDKLRPLCYTNT----DIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPK 124

Query: 530 SGYGVPCLLIASKDDL-------------KPYTMAVQDSARVTQELGIEPPIPVSMKSKD 576
                P +L+ ++ DL             K   +  + +  + +E+     I  S  ++ 
Sbjct: 125 ----APIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQK 180

Query: 577 -LNNVFSRIIWAAEHP 591
            L  VF   I A    
Sbjct: 181 NLKEVFDAAIVAGIQY 196

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score = 94.7 bits (236), Expect = 2e-22
 Identities = 53/195 (27%), Positives = 78/195 (40%), Gaps = 34/195 (17%)

Query: 4   GSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT---RLPPDFYPDRVP 60
           GS  S    ++ V VGD   GK+ ++    +   P      + PT       +   D   
Sbjct: 1   GSHMSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPT----DYIPTVFDNFSANVAVDGQI 56

Query: 61  VT--IIDTSSSLENKGKLNEELKR--------ADAVVLTYACNQQSTLSRLSSYWLPELR 110
           V   + DT+          E+  R        AD  VL ++   +++   +   W+PELR
Sbjct: 57  VNLGLWDTAGQ--------EDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELR 108

Query: 111 RLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF-----REIETC--VECSATTMIQ 163
           R    VPI++ G KLDLR D     L +    I         ++I     +ECS+ T   
Sbjct: 109 RFAPNVPIVLVGTKLDLRDDKG--YLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQN 166

Query: 164 VPDVFYYAQKAVLHP 178
           V  VF  A K VL P
Sbjct: 167 VKAVFDTAIKVVLQP 181

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score = 43.5 bits (103), Expect = 6e-05
 Identities = 42/208 (20%), Positives = 76/208 (36%), Gaps = 36/208 (17%)

Query: 419 TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLIL- 477
           +     +C+  G    GK+ +L  +    F  +Y PT  + ++ NV     G    L L 
Sbjct: 5   SVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVA--VDGQIVNLGLW 62

Query: 478 ----QEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKEL-LVEVARLGEDSGY 532
               QE  +    + LS + A    D+ +  +    + S++   +  + E+ R   +   
Sbjct: 63  DTAGQE--DYSRLRPLSYRGA----DIFVLAFSLISKASYENVLKKWMPELRRFAPN--- 113

Query: 533 GVPCLLIASKDDLKPYTMAVQDSAR-VTQELG------------IEPPIPVSMKSKD-LN 578
            VP +L+ +K DL+     + D    +T   G            IE     S K++  + 
Sbjct: 114 -VPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIE----CSSKTQQNVK 168

Query: 579 NVFSRIIWAAEHPHLNIPETETGRNRKR 606
            VF   I     P          +N +R
Sbjct: 169 AVFDTAIKVVLQPPRRKEVPRRRKNHRR 196

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score = 93.3 bits (232), Expect = 5e-22
 Identities = 49/186 (26%), Positives = 76/186 (40%), Gaps = 22/186 (11%)

Query: 9   SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPV------- 61
           S   ++ VVVGD   GK+ L+ +  T + P +  P         D Y   V V       
Sbjct: 2   SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF------DNYSANVMVDGKPVNL 55

Query: 62  TIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVA 121
            + DT+   +          + D  ++ ++    ++   + + W PE+R      PII+ 
Sbjct: 56  GLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILV 115

Query: 122 GCKLDLRGDHNATSLEEVMG--PIMQQ-----FREI--ETCVECSATTMIQVPDVFYYAQ 172
           G KLDLR D +     +     PI         +EI     +ECSA T   +  VF  A 
Sbjct: 116 GTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 175

Query: 173 KAVLHP 178
           +AVL P
Sbjct: 176 RAVLCP 181

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score = 40.5 bits (95), Expect = 5e-04
 Identities = 38/183 (20%), Positives = 66/183 (36%), Gaps = 24/183 (13%)

Query: 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIP-EE 483
           +C++ G    GK+ LL S+    F   Y PT  + Y+ NV     G    L L +   +E
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANV--MVDGKPVNLGLWDTAGQE 64

Query: 484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKE-LLVEVARLGEDSGYGVPCLLIASK 542
              ++     +    DV++  +      S++  +     EV           P +L+ +K
Sbjct: 65  DYDRL--RPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP----NTPIILVGTK 118

Query: 543 DDL-------------KPYTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVFSRIIWAA 588
            DL             K   +       + +E+G    +  S  ++  L  VF   I A 
Sbjct: 119 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 178

Query: 589 EHP 591
             P
Sbjct: 179 LCP 181

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score = 92.9 bits (231), Expect = 6e-22
 Identities = 49/191 (25%), Positives = 82/191 (42%), Gaps = 16/191 (8%)

Query: 4   GSGSSSRTG------VRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYP 56
           G+G SS         ++ VVVGD   GK+ L+ + A ++ PE+ VP V     +      
Sbjct: 4   GAGRSSMAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGG 63

Query: 57  DRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKV 116
            +  + + DT+   +            D  ++ ++    ++   +   W+PEL+     V
Sbjct: 64  KQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNV 123

Query: 117 PIIVAGCKLDLRGDHNATSLEEVMG--PIMQQ-----FREI--ETCVECSATTMIQVPDV 167
           P ++ G ++DLR D    +    M   PI  +      +EI     VECSA T   +  V
Sbjct: 124 PFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTV 183

Query: 168 FYYAQKAVLHP 178
           F  A  A+L P
Sbjct: 184 FDEAIIAILTP 194

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 49/188 (26%), Positives = 76/188 (40%), Gaps = 32/188 (17%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLIL-----Q 478
            +C++ G    GK+ LL S+    F E Y PT  + YAV+V    GG +  L L     Q
Sbjct: 19  LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSV--TVGGKQYLLGLYDTAGQ 76

Query: 479 EIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLV-EVARLGEDSGYGVPCL 537
           E  +    + LS        DV +  +   +  S++  KE  V E+          VP L
Sbjct: 77  E--DYDRLRPLSYPMT----DVFLICFSVVNPASFQNVKEEWVPELKEYAP----NVPFL 126

Query: 538 LIASKDDL-------------KPYTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVFSR 583
           LI ++ DL             K   + V+   ++ +E+G    +  S  ++  L  VF  
Sbjct: 127 LIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDE 186

Query: 584 IIWAAEHP 591
            I A   P
Sbjct: 187 AIIAILTP 194

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score = 92.9 bits (231), Expect = 1e-21
 Identities = 53/202 (26%), Positives = 77/202 (38%), Gaps = 38/202 (18%)

Query: 1   MPGGSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVP 60
           M G         V+VV+VGD G GK+SL+   A        P  + PT    + Y   + 
Sbjct: 23  MAGEEAPPGVRSVKVVLVGDGGCGKTSLLMVFADG----AFPESYTPTVF--ERYMVNLQ 76

Query: 61  V-------TIIDTSSSLENKGKLNEELKR--------ADAVVLTYACNQQSTLSRLSSYW 105
           V        I DT+          ++  R        A  ++L +     ++   + + W
Sbjct: 77  VKGKPVHLHIWDTAGQ--------DDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRW 128

Query: 106 LPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMG--PIMQQ-----FREIETC--VEC 156
            PE+     KVPIIV GCK DLR D +  +     G  P+         R +     +EC
Sbjct: 129 YPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLEC 188

Query: 157 SATTMIQVPDVFYYAQKAVLHP 178
           SA     V  VF  A +  L  
Sbjct: 189 SARLHDNVHAVFQEAAEVALSS 210

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 39/205 (19%), Positives = 70/205 (34%), Gaps = 46/205 (22%)

Query: 411 SVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGG 470
           S+  ++        + +L G    GK++LL  F +  F E+Y PT  E+Y VN+  Q  G
Sbjct: 22  SMAGEEAPPGVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNL--QVKG 79

Query: 471 NKKTLIL-----QEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKEL-LVEVA 524
               L +     Q+  +    + L   +A     V +  +D +   S+         EV 
Sbjct: 80  KPVHLHIWDTAGQD--DYDRLRPLFYPDA----SVLLLCFDVTSPNSFDNIFNRWYPEVN 133

Query: 525 RLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPV-------------- 570
              +     VP +++  K DL+           +  +L      PV              
Sbjct: 134 HFCK----KVPIIVVGCKTDLR-------KDKSLVNKLRRNGLEPVTYHRGQEMARSVGA 182

Query: 571 -------SMKSKDLNNVFSRIIWAA 588
                  +    +++ VF      A
Sbjct: 183 VAYLECSARLHDNVHAVFQEAAEVA 207

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score = 90.1 bits (224), Expect = 5e-21
 Identities = 45/186 (24%), Positives = 79/186 (42%), Gaps = 19/186 (10%)

Query: 6   GSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-----RLPPDFYPDRVP 60
           GS+     ++VVVGD   GK++L+   A +      P  + PT         +    R+ 
Sbjct: 1   GSNQNVKCKIVVVGDSQCGKTALLHVFAKD----CFPENYVPTVFENYTASFEIDTQRIE 56

Query: 61  VTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIV 120
           +++ DTS S             +DAV++ +  ++  TL  +   W  E++       +++
Sbjct: 57  LSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLL 116

Query: 121 AGCKLDLRGDHNATSLEEVMG--PIMQQF-----REI--ETCVECSA-TTMIQVPDVFYY 170
            GCK DLR D +           P+         ++I   T +ECSA  +   V D+F+ 
Sbjct: 117 VGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHV 176

Query: 171 AQKAVL 176
           A  A +
Sbjct: 177 ATLACV 182

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 28/127 (22%), Positives = 45/127 (35%), Gaps = 18/127 (14%)

Query: 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLIL-----QE 479
           + ++ G    GK+ALL+ F +  F ENY PT  E Y  +   +    +  L L       
Sbjct: 9   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASF--EIDTQRIELSLWDTSGSP 66

Query: 480 IPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKEL-LVEVARLGEDSGYGVPCLL 538
                  + LS  +     D  +  +D S   +     +    E+             LL
Sbjct: 67  --YYDNVRPLSYPD----SDAVLICFDISRPETLDSVLKKWKGEIQEFCP----NTKMLL 116

Query: 539 IASKDDL 545
           +  K DL
Sbjct: 117 VGCKSDL 123

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score = 90.2 bits (224), Expect = 7e-21
 Identities = 49/195 (25%), Positives = 81/195 (41%), Gaps = 27/195 (13%)

Query: 1   MPGGSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRV 59
           +P GS  ++    ++V+VGD   GK+ L+   + +  PE  VP V        +    +V
Sbjct: 15  VPRGSHMAAIR-KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQV 73

Query: 60  PVTIIDTSSSLENKGKLNEELKR--------ADAVVLTYACNQQSTLSRLSSYWLPELRR 111
            + + DT+          E+  R         D +++ ++ +   +L  +   W PE++ 
Sbjct: 74  ELALWDTAGQ--------EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH 125

Query: 112 LEIKVPIIVAGCKLDLRGDHN------ATSLEEVMGPIMQQF-REI--ETCVECSATTMI 162
               VPII+ G K DLR D +          E V     +     I     +ECSA T  
Sbjct: 126 FCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKE 185

Query: 163 QVPDVFYYAQKAVLH 177
            V +VF  A +A L 
Sbjct: 186 GVREVFEMATRAGLQ 200

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score = 89.8 bits (223), Expect = 1e-20
 Identities = 50/200 (25%), Positives = 76/200 (38%), Gaps = 38/200 (19%)

Query: 1   MPGGSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVP 60
               +       ++ VVVGD   GK+ L+ +  T       P  + PT    D Y   V 
Sbjct: 19  SHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTN----AFPGEYIPTVF--DNYSANVM 72

Query: 61  V-------TIIDTSSSLENKGKLNEELKR--------ADAVVLTYACNQQSTLSRLSSYW 105
           V        + DT+          E+  R         D  ++ ++    ++   + + W
Sbjct: 73  VDGKPVNLGLWDTAGQ--------EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKW 124

Query: 106 LPELRRLEIKVPIIVAGCKLDLRGDHN------ATSLEEVMGPIMQQF-REI--ETCVEC 156
            PE+R      PII+ G KLDLR D +         L  +  P      +EI     +EC
Sbjct: 125 YPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 184

Query: 157 SATTMIQVPDVFYYAQKAVL 176
           SA T   +  VF  A +AVL
Sbjct: 185 SALTQRGLKTVFDEAIRAVL 204

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score = 44.8 bits (106), Expect = 2e-05
 Identities = 32/142 (22%), Positives = 52/142 (36%), Gaps = 18/142 (12%)

Query: 410 RSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPG 469
           R    +    +    +C++ G    GK+ LL S+    F   Y PT  + Y+ NV     
Sbjct: 17  RGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANV--MVD 74

Query: 470 GNKKTLIL-----QEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLV-EV 523
           G    L L     QE  +    + LS  +     DV +  +      S++  +     EV
Sbjct: 75  GKPVNLGLWDTAGQE--DYDRLRPLSYPQT----DVFLICFSLVSPASFENVRAKWYPEV 128

Query: 524 ARLGEDSGYGVPCLLIASKDDL 545
                      P +L+ +K DL
Sbjct: 129 RHHCP----NTPIILVGTKLDL 146

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score = 88.3 bits (219), Expect = 4e-20
 Identities = 47/195 (24%), Positives = 76/195 (38%), Gaps = 34/195 (17%)

Query: 6   GSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT---RLPPDFYPDRVPVT 62
              S    ++VVVGD   GK+ L+   + +    + P V+ PT       D   D   V 
Sbjct: 19  YFQSMIRKKLVVVGDGACGKTCLLIVFSKD----EFPEVYVPTVFENYVADIEVDGKQVE 74

Query: 63  --IIDTSSSLENKGKLNEELKR--------ADAVVLTYACNQQSTLSRLSSYWLPELRRL 112
             + DT+          E+  R         D +++ ++ +   +L  +   W+PE++  
Sbjct: 75  LALWDTAGQ--------EDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHF 126

Query: 113 EIKVPIIVAGCKLDLRGDHNATS--LEEVMGPIMQQ-----FREI--ETCVECSATTMIQ 163
              VPII+   K DLR D +  +        P+           I     +ECSA T   
Sbjct: 127 CPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEG 186

Query: 164 VPDVFYYAQKAVLHP 178
           V +VF  A +A L  
Sbjct: 187 VREVFETATRAALQK 201

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 42/190 (22%), Positives = 64/190 (33%), Gaps = 46/190 (24%)

Query: 426 CLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLIL-----QEI 480
            ++ G    GK+ LL  F +  F E Y PT  E Y  ++  +  G +  L L     QE 
Sbjct: 28  LVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADI--EVDGKQVELALWDTAGQE- 84

Query: 481 PEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKEL-LVEVARLGEDSGYGVPCLLI 539
            +    + LS  +     DV +  +      S +   E  + EV          VP +L+
Sbjct: 85  -DYDRLRPLSYPDT----DVILMCFSVDSPDSLENIPEKWVPEVKHFCP----NVPIILV 135

Query: 540 ASKDDLKPYTMAVQDSARVTQELGIEPPIPV---------------------SMKSKDLN 578
           A+K DL+           V  EL      PV                     +   + + 
Sbjct: 136 ANKKDLR-------SDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVR 188

Query: 579 NVFSRIIWAA 588
            VF     AA
Sbjct: 189 EVFETATRAA 198

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score = 87.5 bits (217), Expect = 6e-20
 Identities = 48/201 (23%), Positives = 78/201 (38%), Gaps = 37/201 (18%)

Query: 1   MPGGSGSSSRTGVR--VVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT---RLPPDFY 55
           +P GS       V+  +VVVGD   GK++L+   A +      P  + PT        F 
Sbjct: 15  VPRGSHMDPNQNVKCKIVVVGDSQCGKTALLHVFAKD----CFPENYVPTVFENYTASFE 70

Query: 56  PDRVPVT--IIDTSSSLENKGKLNEELKR--------ADAVVLTYACNQQSTLSRLSSYW 105
            D   +   + DTS S                     +DAV++ +  ++  TL  +   W
Sbjct: 71  IDTQRIELSLWDTSGS--------PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKW 122

Query: 106 LPELRRLEIKVPIIVAGCKLDLRGDHN------ATSLEEVMGPIMQQF-REI--ETCVEC 156
             E++       +++ GCK DLR D +            V         ++I   T +EC
Sbjct: 123 KGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC 182

Query: 157 SA-TTMIQVPDVFYYAQKAVL 176
           SA  +   V D+F+ A  A +
Sbjct: 183 SALQSENSVRDIFHVATLACV 203

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score = 41.7 bits (98), Expect = 3e-04
 Identities = 28/128 (21%), Positives = 46/128 (35%), Gaps = 18/128 (14%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLIL-----Q 478
            + ++ G    GK+ALL+ F +  F ENY PT  E Y  +   +    +  L L      
Sbjct: 29  CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASF--EIDTQRIELSLWDTSGS 86

Query: 479 EIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKEL-LVEVARLGEDSGYGVPCL 537
                   + LS  ++    D  +  +D S   +     +    E+             L
Sbjct: 87  P--YYDNVRPLSYPDS----DAVLICFDISRPETLDSVLKKWKGEIQEFCP----NTKML 136

Query: 538 LIASKDDL 545
           L+  K DL
Sbjct: 137 LVGCKSDL 144

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score = 86.2 bits (214), Expect = 1e-19
 Identities = 39/191 (20%), Positives = 76/191 (39%), Gaps = 32/191 (16%)

Query: 4   GSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT---RLPPDFYPDRVP 60
           G   + +  +++VVVGD   GK+ L+ A +   +P      + PT               
Sbjct: 15  GKIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPT----AYVPTVFENFSHVMKYKNEE 70

Query: 61  VT--IIDTSSSLENKGKLNEELKR--------ADAVVLTYACNQQSTLSRLSSYWLPELR 110
               + DT+          EE  R        +D V+L +A N +++   +S+ W PE++
Sbjct: 71  FILHLWDTAGQ--------EEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIK 122

Query: 111 RLEIKVPIIVAGCKLDLRGDHNAT-SLEEVMGPIMQQFREI--ETCVECSATTMIQVPDV 167
                   ++ G K+DLR D +   + +E         +++     +E S+   I + +V
Sbjct: 123 HYIDTAKTVLVGLKVDLRKDGSDDVTKQE----GDDLCQKLGCVAYIEASSVAKIGLNEV 178

Query: 168 FYYAQKAVLHP 178
           F  +   +   
Sbjct: 179 FEKSVDCIFSN 189

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 39/201 (19%), Positives = 72/201 (35%), Gaps = 26/201 (12%)

Query: 403 ALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAV 462
           A+      +    K +  +   + ++ G    GK+ LL +F +      Y PT  E ++ 
Sbjct: 3   AMLAFSDMNTGAGKIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH 62

Query: 463 NVVDQPGGNKKTLIL-----QEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTK 517
            +  +    +  L L     QE  E    + LS  ++    DV +  +  ++  S+    
Sbjct: 63  VM--KYKNEEFILHLWDTAGQE--EYDRLRPLSYADS----DVVLLCFAVNNRTSFDNIS 114

Query: 518 EL-LVEVARLGEDSGYGVPCLLIASKDDL-----KPYTMAVQDSARVTQELGIEPPIPVS 571
                E+    +        +L+  K DL        T   Q+   + Q+LG    I  S
Sbjct: 115 TKWEPEIKHYID----TAKTVLVGLKVDLRKDGSDDVT--KQEGDDLCQKLGCVAYIEAS 168

Query: 572 MKSKD-LNNVFSRIIWAAEHP 591
             +K  LN VF + +      
Sbjct: 169 SVAKIGLNEVFEKSVDCIFSN 189

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score = 85.3 bits (211), Expect = 4e-19
 Identities = 41/190 (21%), Positives = 75/190 (39%), Gaps = 11/190 (5%)

Query: 3   GGSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVP-EKVPPVHAPTRLPPDFYPDRVPV 61
           G +        ++V+VGD   GK++++   A +  P   VP V        +    RV +
Sbjct: 18  GRAPQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVEL 77

Query: 62  TIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVA 121
           ++ DTS S             +DAV+L +  ++  T+      W  E+        +++ 
Sbjct: 78  SLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLI 137

Query: 122 GCKLDLRGDHN------ATSLEEVMGPIMQQF-REI--ETCVECSA-TTMIQVPDVFYYA 171
           GCK DLR D +            +         +++  E  +E SA T+   +  +F  A
Sbjct: 138 GCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTA 197

Query: 172 QKAVLHPTAP 181
               L+  +P
Sbjct: 198 SMLCLNKPSP 207

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score = 41.8 bits (98), Expect = 3e-04
 Identities = 31/189 (16%), Positives = 61/189 (32%), Gaps = 33/189 (17%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLIL-----Q 478
            + +L G    GK+A+L    +  + E Y PT  E Y   +  +    +  L L      
Sbjct: 28  CKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACL--ETEEQRVELSLWDTSGS 85

Query: 479 EIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKEL-LVEVARLGEDSGYGVPCL 537
                   + L   +     D  +  +D S   +     +    E+             L
Sbjct: 86  P--YYDNVRPLCYSD----SDAVLLCFDISRPETVDSALKKWRTEILDYCPS----TRVL 135

Query: 538 LIASKDDL-------------KPYTMAVQDSARVTQELGIEPPIPVSMKSKD--LNNVFS 582
           LI  K DL             K   ++ +    + ++LG E  +  S  + +  ++++F 
Sbjct: 136 LIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFR 195

Query: 583 RIIWAAEHP 591
                  + 
Sbjct: 196 TASMLCLNK 204

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score = 73.1 bits (179), Expect = 4e-14
 Identities = 46/188 (24%), Positives = 79/188 (42%), Gaps = 10/188 (5%)

Query: 1   MPGGSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDR-V 59
                  +++  ++ VVVGD   GK+ L+ +  T + P +  P              + V
Sbjct: 144 TAENIDEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPV 203

Query: 60  PVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPII 119
            + + DT+   +          + D  ++ ++    ++   + + W PE+R      PII
Sbjct: 204 NLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPII 263

Query: 120 VAGCKLDLRGDHNATS--LEEVMGPIMQQF-----REIETC--VECSATTMIQVPDVFYY 170
           + G KLDLR D +      E+ + PI         +EI     +ECSA T   +  VF  
Sbjct: 264 LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 323

Query: 171 AQKAVLHP 178
           A +AVL P
Sbjct: 324 AIRAVLCP 331

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 63.3 bits (153), Expect = 2e-10
 Identities = 84/559 (15%), Positives = 139/559 (24%), Gaps = 163/559 (29%)

Query: 10  RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTI---IDT 66
           R    V++ G  G+GK+ +          +              F+     + +      
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI-------FW-----LNLKNCNSP 195

Query: 67  SSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLD 126
            + LE   KL  ++        T   +  S +         ELRRL    P     C L 
Sbjct: 196 ETVLEMLQKLLYQIDPN----WTSRSDHSSNIKLRIHSIQAELRRLLKSKPY--ENCLLV 249

Query: 127 LRGDHNATSLEEVMGP-IMQQFREIETCVECS--ATTM-IQVPDVFYYAQKAVLHPTAPL 182
           L           V        F      + C    TT   QV D                
Sbjct: 250 LL---------NVQNAKAWNAFN-----LSCKILLTTRFKQVTDF--------------- 280

Query: 183 FDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQ--PAEIVGVKR 240
                       + A     I  DH     L   E+    +K  +   Q  P E+     
Sbjct: 281 ------------LSAATTTHISLDHHSMT-LTPDEVKSLLLKYLDCRPQDLPREV----- 322

Query: 241 VVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLET-TWAVLRKFGYGDDL-ELRDDFLPV 298
                           L+      ++  E  R    TW   +     D L  + +  L  
Sbjct: 323 ----------------LTTNPRRLSIIAESIRDGLATWDNWKHVNC-DKLTTIIESSL-- 363

Query: 299 PTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAE-LEDLFLTAPESPWDEAPYKD 357
              L P    E           +F         A  P   L  +        W +    D
Sbjct: 364 -NVLEPA---EYRKMFDRL--SVF------PPSAHIPTILLSLI--------WFDVIKSD 403

Query: 358 AAETTALGNLTLKGFVSKWA------LMTL-LDPRHSLANLIYV------GYGGDPAAAL 404
                    L     V K        + ++ L+ +  L N   +       Y        
Sbjct: 404 VMVVVNK--LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY-------- 453

Query: 405 RVTRKRSVDRKKQQTERN-VFRCL---LFGPQNAGKSAL-----LN-SFLERPFSENYAP 454
            + +    D           +  +   L   ++  +  L     L+  FLE+    +   
Sbjct: 454 NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTA 513

Query: 455 TTGEQYAVNVVDQPGGNKKTLILQE-IPEEGVKKILSNKEALASCDVTIFVYDSSDEYSW 513
                  +N + Q    K  +   +   E  V  IL     L   +  +     +D    
Sbjct: 514 WNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF---LPKIEENLICSKYTD---- 566

Query: 514 KRTKELLVEVARLGEDSGY 532
                 L+ +A + ED   
Sbjct: 567 ------LLRIALMAEDEAI 579

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.4 bits (148), Expect = 6e-10
 Identities = 59/399 (14%), Positives = 114/399 (28%), Gaps = 123/399 (30%)

Query: 282 KFGYGDDLE-LRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDN-----DGAVRP 335
           ++ Y D L    D F+        +   +   +  +  + I    +ID+     D     
Sbjct: 15  QYQYKDILSVFEDAFVD-------NFDCK---DVQDMPKSILSKEEIDHIIMSKDAVSGT 64

Query: 336 AELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFV-SKWALMTLLDPRHSLANLIYV 394
             L    L+  E        +   E     N     F+ S         P  S+   +Y+
Sbjct: 65  LRLFWTLLSKQEEM-----VQKFVEEVLRINY---KFLMSPIKTEQR-QP--SMMTRMYI 113

Query: 395 GY------GGDPAAALRVTRKRSVDR-----KKQQTERNVFRCLLFGPQNAGKSAL---- 439
                        A   V+R +   +      + +  +NV    + G   +GK+ +    
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL---IDGVLGSGKTWVALDV 170

Query: 440 LNSF-LERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASC 498
             S+ ++            + + +N+      N  +        E V ++L         
Sbjct: 171 CLSYKVQCKMD-------FKIFWLNL-----KNCNS-------PETVLEMLQKLLYQIDP 211

Query: 499 DVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDS--- 555
           + T    D S      R   +  E+ RL +   Y   CLL+    +       VQ++   
Sbjct: 212 NWTSRS-DHSSNIK-LRIHSIQAELRRLLKSKPY-ENCLLVL--LN-------VQNAKAW 259

Query: 556 ---------------ARVTQELGIEPPIPVSM----------KSKDLNNVFSRIIWAAE- 589
                           +VT  L       +S+          + K L     + +     
Sbjct: 260 NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL---LLKYLDCRPQ 316

Query: 590 ---------HP-HLN-IPE-TETGRNR-KRYRHLVNSSL 615
                    +P  L+ I E    G      ++H+    L
Sbjct: 317 DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL 355

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 50.1 bits (120), Expect = 4e-07
 Identities = 31/175 (17%), Positives = 66/175 (37%), Gaps = 26/175 (14%)

Query: 411 SVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQP-- 468
           +++   ++     F+ + +GP  +GK+    + L+  +S+      GE  ++   D+   
Sbjct: 5   TINFANREIN---FKIVYYGPGLSGKT----TNLKWIYSKVPEGRKGEMVSLATEDERTL 57

Query: 469 GGNKKTLILQEIPEEGVK----------KILSN-KEALASCDVTIFVYDSSDEYSWKRTK 517
             +   L + E+     +             ++ K  L   D  +FV DS+        +
Sbjct: 58  FFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAE 117

Query: 518 EL--LVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPV 570
            +  + E       +   VP ++  +K DL P  + V+    V   +  E   PV
Sbjct: 118 SMRNMRENLAEYGLTLDDVPIVIQVNKRDL-PDALPVEM---VRAVVDPEGKFPV 168

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score = 49.1 bits (118), Expect = 6e-07
 Identities = 41/168 (24%), Positives = 67/168 (39%), Gaps = 24/168 (14%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYP-----DRVPVT--IIDT 66
           +V++VG+ G GKS+L                H P   P D Y      D+  VT  + D 
Sbjct: 25  KVMLVGESGVGKSTLAGTFGGLQGDSA----HEPE-NPEDTYERRIMVDKEEVTLVVYDI 79

Query: 67  SSSLENKGKLNEE-LKRADAVVLTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGC 123
               +  G L +  L+  DA ++ ++   + + S++    L  LR       +P+I+ G 
Sbjct: 80  WEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPE-TLLRLRAGRPHHDLPVILVGN 138

Query: 124 KLDLRGDHNATSLEEVMGPIMQQFREIETC--VECSATTMIQVPDVFY 169
           K DL       SLEE      +      +C  +E SA       ++F 
Sbjct: 139 KSDLA-RSREVSLEEG-----RHLAGTLSCKHIETSAALHHNTRELFE 180

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 24/128 (18%), Positives = 49/128 (38%), Gaps = 13/128 (10%)

Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEI-- 480
           +F+ +L G    GKS L  +F        + P   E      +     +K+ + L  +  
Sbjct: 23  IFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMV---DKEEVTLV-VYD 78

Query: 481 ---PEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCL 537
                +    +  +   L + D  + V+  +D  S+ +  E L+ +          +P +
Sbjct: 79  IWEQGDAGGWLRDH--CLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHH--DLPVI 134

Query: 538 LIASKDDL 545
           L+ +K DL
Sbjct: 135 LVGNKSDL 142

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193

 Score = 49.0 bits (117), Expect = 9e-07
 Identities = 34/164 (20%), Positives = 60/164 (36%), Gaps = 27/164 (16%)

Query: 411 SVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFS------ENYAPTTGEQYAVNV 464
                    + ++   ++ GPQN+GK++LL               E  +    +   V +
Sbjct: 39  GGSGGGGSYQPSI---IIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSGVTL 95

Query: 465 VDQPGGNK-KTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSS-DEYSWKRTKELLVE 522
           VD PG  K +  +   +           K         IF+ DS+ D      T E LV+
Sbjct: 96  VDFPGHVKLRYKLSDYL-----------KTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVD 144

Query: 523 VARLGEDSG-YGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE 565
           +  + E S   G+  L+  +K +L     A    +++   L  E
Sbjct: 145 ILSITESSCENGIDILIACNKSELF---TAR-PPSKIKDALESE 184

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214

 Score = 49.0 bits (117), Expect = 1e-06
 Identities = 28/154 (18%), Positives = 56/154 (36%), Gaps = 15/154 (9%)

Query: 415 KKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKT 474
            ++ ++R V   L  G  ++GK+ L    L   + +    +  +     +         +
Sbjct: 2   ARKSSQRAV---LFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDS--SAIYKVNNNRGNS 55

Query: 475 LILQEIPEEGVKKILSN--KEALASCDVTIFVYDSSDEYSWKR-TKELLVEVARLGEDSG 531
           L L ++P  G + +         +S    +FV DS+      +   E L +V        
Sbjct: 56  LTLIDLP--GHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALK 113

Query: 532 YGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE 565
                L+  +K D+    MA   +  + Q+L  E
Sbjct: 114 NSPSLLIACNKQDIA---MAK-SAKLIQQQLEKE 143

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218

 Score = 48.6 bits (116), Expect = 1e-06
 Identities = 37/161 (22%), Positives = 65/161 (40%), Gaps = 29/161 (18%)

Query: 415 KKQQTERNVFRCLLFGPQNAGKSALLNSFLER------PFSENYAPTTGEQYAVNVVDQP 468
           K++  + ++   ++ GPQN+GK++LL               E  +    +   V +VD P
Sbjct: 7   KQKSYQPSI---IIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSGVTLVDFP 63

Query: 469 GGNKKTLILQEIPEEGVKKILSN--KEALASCDVTIFVYDSS-DEYSWKRTKELLVEVAR 525
           G  K            ++  LS+  K         IF+ DS+ D      T E LV++  
Sbjct: 64  GHVK------------LRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILS 111

Query: 526 LGEDSG-YGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE 565
           + E S   G+  L+  +K +L     A    +++   L  E
Sbjct: 112 ITESSCENGIDILIACNKSELF---TAR-PPSKIKDALESE 148

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score = 47.9 bits (115), Expect = 1e-06
 Identities = 28/172 (16%), Positives = 59/172 (34%), Gaps = 37/172 (21%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYP-----DRVPVT--IIDT 66
           +V +VG+  +GKS+L+    T +  ++     +P       +      D       I D 
Sbjct: 22  KVGIVGNLSSGKSALVHRYLTGTYVQE----ESPEG---GRFKKEIVVDGQSYLLLIRDE 74

Query: 67  SSSLENKGKLNEE---LKRADAVVLTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVA 121
                       E       DAVV  ++   + +   + + +   L       +VP+++ 
Sbjct: 75  GGP--------PELQFAAWVDAVVFVFSLEDEISFQTVYN-YFLRLCSFRNASEVPMVLV 125

Query: 122 GCKLDLRGDHN-ATSLEEVMGPIMQQF-REIETC--VECSATTMIQVPDVFY 169
           G +  +   +              ++   +++ C   E  AT  + V  VF 
Sbjct: 126 GTQDAISAANPRVIDDSRA-----RKLSTDLKRCTYYETCATYGLNVERVFQ 172

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score = 44.1 bits (105), Expect = 3e-05
 Identities = 25/153 (16%), Positives = 53/153 (34%), Gaps = 41/153 (26%)

Query: 410 RSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTT----------GEQ 459
            S  R+    +    +  + G  ++GKSAL++ +L   + +  +P            G+ 
Sbjct: 7   HSSGRENLYFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQS 66

Query: 460 YAVNVVDQPGGNKKTLILQE-----IPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWK 514
           Y + + D+ G                  + V                +FV+   DE S++
Sbjct: 67  YLLLIRDEGG--------PPELQFAAWVDAV----------------VFVFSLEDEISFQ 102

Query: 515 RTKELLVEVARLGEDSGYGVPCLLIASKDDLKP 547
                 + +      S   VP +L+ ++D +  
Sbjct: 103 TVYNYFLRLCSFRNAS--EVPMVLVGTQDAISA 133

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score = 50.0 bits (119), Expect = 2e-06
 Identities = 36/193 (18%), Positives = 61/193 (31%), Gaps = 30/193 (15%)

Query: 1   MPGGSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVP 60
              G        ++V ++GD   GK+SL+     E+   K    H       +    + P
Sbjct: 30  RSKGEALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGL-----NVVTKQAP 84

Query: 61  VTIIDTSSSLENKGKLN-------EE--------LKRADAVVLTYACNQQSTLSRLSSYW 105
                 +     +   +       E         + R+   +L       S       YW
Sbjct: 85  NIKGLENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTDSNKH----YW 140

Query: 106 LPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIE-TCVECSATTMIQV 164
           L  + +   K P+IV   K+D    +N    +     I ++F  IE      S      V
Sbjct: 141 LRHIEKYGGKSPVIVVMNKIDENPSYNIEQKK-----INERFPAIENRFHRISCKNGDGV 195

Query: 165 PDVFYYAQKAVLH 177
             +    + AVLH
Sbjct: 196 ESIAKSLKSAVLH 208

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score = 43.4 bits (102), Expect = 2e-04
 Identities = 27/166 (16%), Positives = 48/166 (28%), Gaps = 35/166 (21%)

Query: 409 KRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTG-----EQYAVN 463
           + +  + +        +  L G   AGK++LL   +   F    + T G     +Q    
Sbjct: 27  EEARSKGEALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNI 86

Query: 464 VVDQPGGNKKTLIL-------QEIPEEGVKKILSNKEALASC-----DVTIFVYDSSDEY 511
              +     K  +        QEI             A          V + + DS    
Sbjct: 87  KGLENDDELKECLFHFWDFGGQEIM-----------HASHQFFMTRSSVYMLLLDSR--- 132

Query: 512 SWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSAR 557
           +       L  + + G  S    P +++ +K D  P     Q    
Sbjct: 133 TDSNKHYWLRHIEKYGGKS----PVIVVMNKIDENPSYNIEQKKIN 174

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score = 47.5 bits (114), Expect = 2e-06
 Identities = 39/168 (23%), Positives = 65/168 (38%), Gaps = 24/168 (14%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYP-----DRVPVT--IIDT 66
           +V++VG+ G GKS+L                H       D Y      D+  VT  + D 
Sbjct: 4   KVMLVGESGVGKSTLAGTFGGLQGDH----AHEME-NSEDTYERRIMVDKEEVTLIVYDI 58

Query: 67  SSSLENKGKLNEE-LKRADAVVLTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGC 123
               +  G L +  L+  DA ++ ++   + + S++    L  LR       +P+I+ G 
Sbjct: 59  WEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPE-TLLRLRAGRPHHDLPVILVGN 117

Query: 124 KLDLRGDHNATSLEEVMGPIMQQFREIETC--VECSATTMIQVPDVFY 169
           K DL       SLEE      +      +C  +E SA       ++F 
Sbjct: 118 KSDLA-RSREVSLEEG-----RHLAGTLSCKHIETSAALHHNTRELFE 159

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score = 42.9 bits (102), Expect = 7e-05
 Identities = 24/128 (18%), Positives = 48/128 (37%), Gaps = 13/128 (10%)

Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEI-- 480
           VF+ +L G    GKS L  +F        +     E      +     +K+ + L  +  
Sbjct: 2   VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMV---DKEEVTLI-VYD 57

Query: 481 ---PEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCL 537
                +    +  +   L + D  + V+  +D  S+ +  E L+ +          +P +
Sbjct: 58  IWEQGDAGGWLQDH--CLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHH--DLPVI 113

Query: 538 LIASKDDL 545
           L+ +K DL
Sbjct: 114 LVGNKSDL 121

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score = 47.6 bits (114), Expect = 2e-06
 Identities = 27/133 (20%), Positives = 48/133 (36%), Gaps = 26/133 (19%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTT-----------GEQYAVNVVDQPGGNK 472
               + G + AGKSAL   FL + F   Y P              +   + V+D      
Sbjct: 22  VNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTAD--- 78

Query: 473 KTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGY 532
                 + P    ++ L+   A       + VY      S+  +   L  +A   +++  
Sbjct: 79  -----LDTP-RNCERYLNWAHAF------LVVYSVDSRQSFDSSSSYLELLALHAKETQR 126

Query: 533 GVPCLLIASKDDL 545
            +P LL+ +K D+
Sbjct: 127 SIPALLLGNKLDM 139

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score = 43.3 bits (103), Expect = 5e-05
 Identities = 41/181 (22%), Positives = 65/181 (35%), Gaps = 30/181 (16%)

Query: 4   GSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYP-----DR 58
                    V + ++G RG GKS+L     T+    +    + P     D Y      D 
Sbjct: 13  NLYFQGPLEVNLAILGRRGAGKSALTVKFLTKRFISE----YDPN--LEDTYSSEETVDH 66

Query: 59  VPVT--IIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIK- 115
            PV   ++DT+   +        L  A A ++ Y+ + + +    SSY   EL  L  K 
Sbjct: 67  QPVHLRVMDTADL-DTPRNCERYLNWAHAFLVVYSVDSRQSFDSSSSYL--ELLALHAKE 123

Query: 116 ----VPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETC--VECSA-TTMIQVPDVF 168
               +P ++ G KLD+   +   +  E              C   E SA      V  VF
Sbjct: 124 TQRSIPALLLGNKLDMA-QYRQVTKAEG-----VALAGRFGCLFFEVSACLDFEHVQHVF 177

Query: 169 Y 169
           +
Sbjct: 178 H 178

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score = 47.2 bits (113), Expect = 2e-06
 Identities = 43/169 (25%), Positives = 69/169 (40%), Gaps = 26/169 (15%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPV-------TIIDT 66
           RVV++GD G GK+SL +  A +   +     H       D Y   + V        ++DT
Sbjct: 6   RVVLLGDPGVGKTSLASLFAGKQERDL----HEQL--GEDVYERTLTVDGEDTTLVVVDT 59

Query: 67  SSSLENKGKLNEEL--KRADAVVLTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAG 122
             + +     ++E   +   A V+ Y+   + +    S     +LRR      VPII+ G
Sbjct: 60  WEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASE-LRIQLRRTHQADHVPIILVG 118

Query: 123 CKLDLRGDHNATSLEEVMGPIMQQFREIETC--VECSATTMIQVPDVFY 169
            K DL       S+EE      +    +  C  +E SAT    V ++F 
Sbjct: 119 NKADLA-RCREVSVEEG-----RACAVVFDCKFIETSATLQHNVAELFE 161

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score = 45.6 bits (109), Expect = 9e-06
 Identities = 28/134 (20%), Positives = 52/134 (38%), Gaps = 25/134 (18%)

Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTT-----------GEQYAVNVVDQPGGN 471
           ++R +L G    GK++L + F  +   + +               GE   + VVD     
Sbjct: 4   LYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWE-- 61

Query: 472 KKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSG 531
                  E  ++      S +  L      + VY  +D  S++   EL +++ R  +   
Sbjct: 62  ------AEKLDK----SWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQAD- 110

Query: 532 YGVPCLLIASKDDL 545
             VP +L+ +K DL
Sbjct: 111 -HVPIILVGNKADL 123

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 37/175 (21%), Positives = 68/175 (38%), Gaps = 37/175 (21%)

Query: 14  RVVVVGDRGTGKSSLIA--AAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLE 71
           RVV++G++G GKS+L    A   +S+      +        D Y     + +   S+++ 
Sbjct: 8   RVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGE------DTY--ERTLMVDGESATII 59

Query: 72  NKGKLN-------EE------LKRADAVVLTYACNQQSTLSRLSSYWLPELRRL--EIKV 116
               L+        E      ++  DA ++ Y+   +++  + S     +LRR      +
Sbjct: 60  ---LLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASE-LRIQLRRARQTEDI 115

Query: 117 PIIVAGCKLDLRGDHNATSLE--EVMGPIMQQFREIETCVECSATTMIQVPDVFY 169
           PII+ G K DL      +  E          +F      +E SA     V ++F 
Sbjct: 116 PIILVGNKSDLVRXREVSVSEGRAXAVVFDXKF------IETSAAVQHNVKELFE 164

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 43/191 (22%), Positives = 76/191 (39%), Gaps = 40/191 (20%)

Query: 1   MPGGSGSSSRTGV---RVVVVGDRGTGKSSLIA--AAATESVPEKVPPVHAPTRLPPDFY 55
           M   S  SS +G    RVV++G++G GKS+L    A   +S+      +        D Y
Sbjct: 23  MSTDSVISSESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGE------DTY 76

Query: 56  PDRVPVTIIDTSSSLENKGKLN-------EE------LKRADAVVLTYACNQQSTLSRLS 102
                + +   S+++     L+        E      ++  DA ++ Y+   +++  + S
Sbjct: 77  --ERTLMVDGESATII---LLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKAS 131

Query: 103 SYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETC--VECSA 158
                +LRR      +PII+ G K DL       S+ E      +    +  C  +E SA
Sbjct: 132 E-LRIQLRRARQTEDIPIILVGNKSDLV-RCREVSVSEG-----RACAVVFDCKFIETSA 184

Query: 159 TTMIQVPDVFY 169
                V ++F 
Sbjct: 185 AVQHNVKELFE 195

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score = 46.7 bits (112), Expect = 3e-06
 Identities = 29/134 (21%), Positives = 51/134 (38%), Gaps = 24/134 (17%)

Query: 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNV-VDQPGGNKKTL-IL-- 477
           N +R  +FG    GKS+L+  F++  F E+Y PT  + Y   +  D    +  TL I   
Sbjct: 2   NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCD---KSICTLQITDT 58

Query: 478 --QE----IPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSG 531
                   +    +                I VY  +   S +  K +  ++  +  D  
Sbjct: 59  TGSHQFPAMQRLSIS----------KGHAFILVYSITSRQSLEELKPIYEQICEIKGDVE 108

Query: 532 YGVPCLLIASKDDL 545
             +P +L+ +K D 
Sbjct: 109 S-IPIMLVGNKCDE 121

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score = 40.6 bits (96), Expect = 5e-04
 Identities = 36/168 (21%), Positives = 58/168 (34%), Gaps = 25/168 (14%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYP-------DRVPVTIIDT 66
           RV V G  G GKSSL+      +  E     + PT    D Y            + I DT
Sbjct: 5   RVAVFGAGGVGKSSLVLRFVKGTFRES----YIPTV--EDTYRQVISCDKSICTLQITDT 58

Query: 67  SSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRL---EIKVPIIVAGC 123
           + S +        + +  A +L Y+   + +L  L      ++  +      +PI++ G 
Sbjct: 59  TGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKP-IYEQICEIKGDVESIPIMLVGN 117

Query: 124 KLDLRGDHNATSLEEVMGPIMQQFREIETC--VECSATTMIQVPDVFY 169
           K D           E      +       C  +E SA     V ++F 
Sbjct: 118 KCDES-PSREVQSSEA-----EALARTWKCAFMETSAKLNHNVKELFQ 159

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score = 47.2 bits (113), Expect = 3e-06
 Identities = 26/134 (19%), Positives = 52/134 (38%), Gaps = 24/134 (17%)

Query: 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNV-VDQPGGNKKTL-IL-- 477
           N +R ++FG    GKS+L+  F++  F + Y PT  + Y   +  D    +  TL I   
Sbjct: 7   NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCD---KSVCTLQITDT 63

Query: 478 --QE----IPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSG 531
                   +    +                I V+  + + S +    +   + ++ + S 
Sbjct: 64  TGSHQFPAMQRLSIS----------KGHAFILVFSVTSKQSLEELGPIYKLIVQI-KGSV 112

Query: 532 YGVPCLLIASKDDL 545
             +P +L+ +K D 
Sbjct: 113 EDIPVMLVGNKCDE 126

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score = 44.1 bits (105), Expect = 4e-05
 Identities = 35/168 (20%), Positives = 60/168 (35%), Gaps = 26/168 (15%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYP-------DRVPVTIIDT 66
           RVVV G  G GKSSL+      +  +     + PT    D Y            + I DT
Sbjct: 10  RVVVFGAGGVGKSSLVLRFVKGTFRDT----YIPTIE--DTYRQVISCDKSVCTLQITDT 63

Query: 67  SSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRL---EIKVPIIVAGC 123
           + S +        + +  A +L ++   + +L  L       + ++      +P+++ G 
Sbjct: 64  TGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGP-IYKLIVQIKGSVEDIPVMLVGN 122

Query: 124 KLDLRGDHNATSLEEVMGPIMQQFREIETC--VECSATTMIQVPDVFY 169
           K D           E      Q   +   C  +E SA     V ++F 
Sbjct: 123 KCDE--TQREVDTREA-----QAVAQEWKCAFMETSAKMNYNVKELFQ 163

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score = 45.7 bits (109), Expect = 7e-06
 Identities = 30/179 (16%), Positives = 55/179 (30%), Gaps = 35/179 (19%)

Query: 7   SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYP-----DRVPV 61
             S   +R+ V+GD  +GKSSLI    T S                + Y      D    
Sbjct: 2   MRSIPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTES-------EQYKKEMLVDGQTH 54

Query: 62  T--IIDTSSSLENKGKLNEE---LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIK- 115
              I + + +         +      ADAV+  ++   +++   +S     +L  L  + 
Sbjct: 55  LVLIREEAGA--------PDAKFSGWADAVIFVFSLEDENSFQAVSR-LHGQLSSLRGEG 105

Query: 116 -----VPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY 169
                + ++    ++                      R   +  E  AT  + V  VF 
Sbjct: 106 RGGLALALVGTQDRISA-SSPRVVGDARARALXADMKR--CSYYETXATYGLNVDRVFQ 161

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} Length = 423

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 33/171 (19%), Positives = 62/171 (36%), Gaps = 31/171 (18%)

Query: 428 LFGPQNAGKSALLNSFLERPFSE--NYAPTT----------GEQYAVNVVDQPGGNKKTL 475
           + G +N GKS+ +N+ + +  S   +YA TT               V +VD PG +    
Sbjct: 39  VAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVG- 97

Query: 476 ILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVP 535
              E+    V+K    +      D  I V DS+          L  E+          +P
Sbjct: 98  ---ELGRLRVEKA---RRVFYRADCGILVTDSAPTPYEDDVVNLFKEM---------EIP 142

Query: 536 CLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVFSRII 585
            +++ +K D+       ++   + +       + VS   K   +++   I 
Sbjct: 143 FVVVVNKIDVLG--EKAEELKGLYESRYEAKVLLVSALQKKGFDDIGKTIS 191

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score = 44.4 bits (106), Expect = 2e-05
 Identities = 36/168 (21%), Positives = 58/168 (34%), Gaps = 27/168 (16%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYP-----DRVPVT--IIDT 66
           +V+++G  G GKS+L                 A        Y      D    +  + D 
Sbjct: 4   KVLLLGAPGVGKSALARIFGGVEDGP-----EAEA--AGHTYDRSIVVDGEEASLMVYDI 56

Query: 67  SSSLENKGKLNEE-LKRADAVVLTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGC 123
               +    L    +   DA V+ Y+   + +  + S     +LRR      VPII+ G 
Sbjct: 57  WEQ-DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASE-LRVQLRRARQTDDVPIILVGN 114

Query: 124 KLDLRGDHNATSLEEVMGPIMQQFREIETC--VECSATTMIQVPDVFY 169
           K DL       S++E      +    +  C  +E SA     V  +F 
Sbjct: 115 KSDLV-RSREVSVDEG-----RACAVVFDCKFIETSAALHHNVQALFE 156

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 24/187 (12%), Positives = 56/187 (29%), Gaps = 55/187 (29%)

Query: 15  VVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVP--VTI-IDTSS-SL 70
           +++VG+ G+GK++L+                   +L      D      T+ ID     +
Sbjct: 5   LMIVGNTGSGKTTLL------------------QQLMKTKKSDLGMQSATVGIDVKDWPI 46

Query: 71  ENKGKLNEELK---------------------RADAVVLTY-ACNQQSTLSRLSSYWLPE 108
           + + K   +L                      +    +  Y     Q+ +  +   WL  
Sbjct: 47  QIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMK-PWLFN 105

Query: 109 LRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE-------IETCVECSATTM 161
           ++      P+I+ G  LD+  +      +  M  I ++           +     +    
Sbjct: 106 IKARASSSPVILVGTHLDVSDEK---QRKACMSKITKELLNKRGFPAIRDYHFVNATEES 162

Query: 162 IQVPDVF 168
             +  + 
Sbjct: 163 DALAKLR 169

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score = 43.8 bits (104), Expect = 4e-05
 Identities = 32/152 (21%), Positives = 56/152 (36%), Gaps = 18/152 (11%)

Query: 414 RKKQQTERNVFRCLLFGPQNAGKSALLNSF-LERPFSENYAPTTGEQYAVNVVDQPGGNK 472
           R  ++        L  G  N+GK+ ++N        S+N  PT G  +++        + 
Sbjct: 17  RGSKE-----VHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKS---SS 66

Query: 473 KTLILQEIPEEGVKKILSN-KEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSG 531
            +  + ++   G  +  +  +         IFV DSSD       KE L  +    +   
Sbjct: 67  LSFTVFDM--SGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKH 124

Query: 532 YGVPCLLIASKDDLKPYTMAVQDSARVTQELG 563
             +P L  A+K DL    +       V+Q L 
Sbjct: 125 RRIPILFFANKMDL-RDAVTSVK---VSQLLC 152

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score = 43.3 bits (103), Expect = 5e-05
 Identities = 37/158 (23%), Positives = 64/158 (40%), Gaps = 33/158 (20%)

Query: 398 GDPAAALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTG 457
           G P  +      ++           + + ++ G    GKSAL   F+   F E+Y PT  
Sbjct: 1   GSPGISGGGGGSQNSLA--------LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA 52

Query: 458 EQYAVNV-VDQPGGNKKTL-IL----QE----IPEEGVKKILSNKEALASCDVTIFVYDS 507
           + Y   V +D   G +  + IL    QE    I +   +          S +  + V+  
Sbjct: 53  DSYRKKVVLD---GEEVQIDILDTAGQEDYAAIRDNYFR----------SGEGFLCVFSI 99

Query: 508 SDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDL 545
           ++  S+  T +   ++ R+ ED    VP LL+ +K DL
Sbjct: 100 TEMESFAATADFREQILRVKEDE--NVPFLLVGNKSDL 135

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score = 40.6 bits (96), Expect = 4e-04
 Identities = 40/179 (22%), Positives = 73/179 (40%), Gaps = 24/179 (13%)

Query: 2   PGGSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYP----- 56
            GG   +S    +V++VG  G GKS+L      +   E     + PT+   D Y      
Sbjct: 8   GGGGSQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVED----YEPTK--ADSYRKKVVL 61

Query: 57  --DRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRL-- 112
             + V + I+DT+   +     +   +  +  +  ++  +  + +  +  +  ++ R+  
Sbjct: 62  DGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATAD-FREQILRVKE 120

Query: 113 EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETC--VECSATTMIQVPDVFY 169
           +  VP ++ G K DL  D    S+EE      +   E      VE SA T   V  VF+
Sbjct: 121 DENVPFLLVGNKSDLE-DKRQVSVEEA-----KNRAEQWNVNYVETSAKTRANVDKVFF 173

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score = 43.4 bits (103), Expect = 6e-05
 Identities = 30/146 (20%), Positives = 52/146 (35%), Gaps = 26/146 (17%)

Query: 410 RSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPG 469
                 +   +    +  +FG    GKSAL+  FL + F   Y PT    Y         
Sbjct: 15  TENLYFQSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY--------- 65

Query: 470 GNKKTLILQEIPEEGVK-KIL---------SNKEALASCDVTIFVYDSSDEYSWKRTKEL 519
             +       I +E V  +IL           +  +   +  + VYD +D  S++    L
Sbjct: 66  --RHQA---TIDDEVVSMEILDTAGQEDTIQREGHMRWGEGFVLVYDITDRGSFEEVLPL 120

Query: 520 LVEVARLGEDSGYGVPCLLIASKDDL 545
              +  + +     V  +L+ +K DL
Sbjct: 121 KNILDEIKKPK--NVTLILVGNKADL 144

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score = 42.9 bits (102), Expect = 6e-05
 Identities = 42/165 (25%), Positives = 70/165 (42%), Gaps = 19/165 (11%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYP-------DRVPVTIIDT 66
           ++VV+G  G GKS+L          EK    + PT    D Y         +  + I+DT
Sbjct: 5   KLVVLGSGGVGKSALTVQFVQGIFVEK----YDPTI--EDSYRKQVEVDCQQCMLEILDT 58

Query: 67  SSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCK 124
           + + +     +  +K      L Y+   QST + L      ++ R+     VP+I+ G K
Sbjct: 59  AGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQD-LREQILRVKDTEDVPMILVGNK 117

Query: 125 LDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY 169
            DL  D      E+    + +Q+      +E SA + I V ++FY
Sbjct: 118 CDLE-DERVVGKEQGQN-LARQWCNCA-FLESSAKSKINVNEIFY 159

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score = 40.6 bits (96), Expect = 4e-04
 Identities = 26/123 (21%), Positives = 58/123 (47%), Gaps = 7/123 (5%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
           ++ ++ G    GKSAL   F++  F E Y PT  + Y   V      + +  +L+ +   
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEV----DCQQCMLEILDTA 59

Query: 484 GVKKILSNKEA-LASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASK 542
           G ++  + ++  + +      VY  + + ++   ++L  ++ R+ +     VP +L+ +K
Sbjct: 60  GTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTE--DVPMILVGNK 117

Query: 543 DDL 545
            DL
Sbjct: 118 CDL 120

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413

 Score = 44.7 bits (105), Expect = 7e-05
 Identities = 27/169 (15%), Positives = 50/169 (29%), Gaps = 15/169 (8%)

Query: 9   SRTGVRVVVVGDRGTGKSSLIAA----AATESVPEKVPPVHAPTRLPPDFYPDRVPVTII 64
             + + V V G+ G+GKSS I         E    K   V       P  +P+   V   
Sbjct: 66  DSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFW 125

Query: 65  DTSSSLENKGKLNEELK-----RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPII 119
           D           +  L+       D  ++  A   +     +       +  ++ +   +
Sbjct: 126 DLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDI----AKAISMMKKEFYFV 181

Query: 120 VAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168
                 D+  + +          ++Q  R    CV       I  P +F
Sbjct: 182 RTKVDSDITNEADGEPQTFDKEKVLQDIR--LNCVNTFRENGIAEPPIF 228

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score = 42.9 bits (102), Expect = 7e-05
 Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 25/133 (18%)

Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNV-VDQPGGNKKTL-IL--- 477
           + + ++ G    GKSAL   F+   F E+Y PT  + Y   V +D   G +  + IL   
Sbjct: 4   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLD---GEEVQIDILDTA 60

Query: 478 -QE----IPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGY 532
            QE    I +   +          S +  + V+  ++  S+  T +   ++ R+ ED   
Sbjct: 61  GQEDYAAIRDNYFR----------SGEGFLCVFSITEMESFAATADFREQILRVKEDE-- 108

Query: 533 GVPCLLIASKDDL 545
            VP LL+ +K DL
Sbjct: 109 NVPFLLVGNKSDL 121

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 35/141 (24%), Positives = 57/141 (40%), Gaps = 15/141 (10%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
            R L+ G   AGK+ +L             PT G  + V  V+          + ++   
Sbjct: 30  MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY---KNICFTVWDV--G 81

Query: 484 GVKKILSN-KEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASK 542
           G  KI    +    +    IFV DS+D    + + + L ++  L ED       L+ A+K
Sbjct: 82  GQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKM--LQEDELRDAVLLVFANK 139

Query: 543 DDLKPYTMAVQDSARVTQELG 563
            D+ P  M V +   +T +LG
Sbjct: 140 QDM-PNAMPVSE---LTDKLG 156

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score = 42.1 bits (100), Expect = 1e-04
 Identities = 31/135 (22%), Positives = 55/135 (40%), Gaps = 25/135 (18%)

Query: 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNV-VDQPGGNKKTL-IL- 477
               + ++ G    GKSAL   F++  F  +Y PT  + Y     VD   G    L IL 
Sbjct: 7   SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVD---GIPARLDILD 63

Query: 478 ---QE----IPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDS 530
              QE    + E+ ++          +    + V+  +D  S+    +L  ++ R+ +  
Sbjct: 64  TAGQEEFGAMREQYMR----------AGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRD 113

Query: 531 GYGVPCLLIASKDDL 545
               P +L+ +K DL
Sbjct: 114 --DFPVVLVGNKADL 126

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score = 40.6 bits (96), Expect = 5e-04
 Identities = 33/167 (19%), Positives = 57/167 (34%), Gaps = 24/167 (14%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYP-------DRVPVTIIDT 66
           ++VVVG  G GKS+L                + PT    D Y            + I+DT
Sbjct: 11  KLVVVGGGGVGKSALTIQFIQSYFVSD----YDPTI--EDSYTKICSVDGIPARLDILDT 64

Query: 67  SSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCK 124
           +   E      + ++     +L +A N + + + +      ++ R+      P+++ G K
Sbjct: 65  AGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGK-LFTQILRVKDRDDFPVVLVGNK 123

Query: 125 LDLRGDHNATSLEEVMGPIMQQFREIETC--VECSATTMIQVPDVFY 169
            DL          E        F         E SA   + V + F 
Sbjct: 124 ADLE-SQRQVPRSEA-----SAFGASHHVAYFEASAKLRLNVDEAFE 164

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 31/146 (21%), Positives = 54/146 (36%), Gaps = 28/146 (19%)

Query: 423 VFRCLLFGPQNAGKSALLNSFLERP--FSENYAPTTGEQYAVNVVDQPGGNKKTLILQEI 480
             +  + G    GKSAL++ F  +   F ++YA T+G +  V            +    I
Sbjct: 20  RCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVV----------APV---TI 66

Query: 481 PEEGVK-KILSN----KE---ALAS-----CDVTIFVYDSSDEYSWKRTKELLVEVARLG 527
           P+  V  ++        +      S         I V+D S   S++  K     +    
Sbjct: 67  PDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSAR 126

Query: 528 EDSGYGVPCLLIASKDDLKPYTMAVQ 553
            D    +  +L+A+K DL P    V+
Sbjct: 127 PDRERPLRAVLVANKTDLPPQRHQVR 152

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 35/167 (20%), Positives = 65/167 (38%), Gaps = 25/167 (14%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFY-------PDRVPVTIIDT 66
           ++VVVG  G GKS+L          ++    + PT    D Y        +   + I+DT
Sbjct: 6   KLVVVGADGVGKSALTIQLIQNHFVDE----YDPTI--EDSYRKQVVIDGETCLLDILDT 59

Query: 67  SSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCK 124
           +   E     ++ ++  +  +  +A N   +   +   +  +++R+     VP+++ G K
Sbjct: 60  AGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHH-YREQIKRVKDSEDVPMVLVGNK 118

Query: 125 LDLRGDHNATSLEEVMGPIMQQFREIETC--VECSATTMIQVPDVFY 169
            DL         ++      Q          +E SA T   V D FY
Sbjct: 119 CDL--PSRTVDTKQA-----QDLARSYGIPFIETSAKTRQGVDDAFY 158

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score = 41.0 bits (97), Expect = 3e-04
 Identities = 27/143 (18%), Positives = 53/143 (37%), Gaps = 47/143 (32%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTT-----------GEQYAVNVVDQPGGNK 472
           ++ ++ G    GKSAL    ++  F + Y PT            GE   ++++D  G   
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG--- 61

Query: 473 KTLILQE----IPE------EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVE 522
                QE    + +      EG                 + V+  ++  S++       +
Sbjct: 62  -----QEEYSAMRDQYMRTGEGF----------------LCVFAINNTKSFEDIHHYREQ 100

Query: 523 VARLGEDSGYGVPCLLIASKDDL 545
           + R+ +     VP +L+ +K DL
Sbjct: 101 IKRVKDSE--DVPMVLVGNKCDL 121

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 37/148 (25%), Positives = 58/148 (39%), Gaps = 25/148 (16%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
            R L+ G  NAGK+ +L  F         +PT G             N KTL  +     
Sbjct: 19  LRLLMLGLDNAGKTTILKKFNGEDVDTI-SPTLG------------FNIKTLEHRGFKLN 65

Query: 484 -----GVKKILSN-KEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCL 537
                G K + S  +    S D  I+V DS+D    +  +  L  +  L E+   G   L
Sbjct: 66  IWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSL--LVEERLAGATLL 123

Query: 538 LIASKDDLKPYTMAVQDSARVTQELGIE 565
           + A+K DL P  ++      + + L ++
Sbjct: 124 IFANKQDL-PGALSCNA---IQEALELD 147

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 26/146 (17%), Positives = 59/146 (40%), Gaps = 24/146 (16%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
               L G Q +GK+  +N      F+E+  PT G     N+        + +    +  +
Sbjct: 23  MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG----FNM--------RKITKGNVTIK 70

Query: 484 -----GVKKILSN-KEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCL 537
                G  +  S  +         +++ D++D+   + +K  L  +  L +    G+P L
Sbjct: 71  LWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNL--LDKPQLQGIPVL 128

Query: 538 LIASKDDLKPYTMAVQDSARVTQELG 563
           ++ +K DL P  +  ++   + +++ 
Sbjct: 129 VLGNKRDL-PGALDEKE---LIEKMN 150

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score = 41.7 bits (99), Expect = 1e-04
 Identities = 29/138 (21%), Positives = 54/138 (39%), Gaps = 37/138 (26%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNV-VDQPGGNKKTL-IL---- 477
           ++ ++ G    GKSAL    ++  F +   PT  + Y   V +D   G    L IL    
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVID---GETCLLDILDTAG 60

Query: 478 QE----IPE------EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLG 527
           QE    + +      EG                 + V+  ++  S++   +   ++ R+ 
Sbjct: 61  QEEYSAMRDQYMRTGEGF----------------LCVFAINNTKSFEDIHQYREQIKRVK 104

Query: 528 EDSGYGVPCLLIASKDDL 545
           +     VP +L+ +K DL
Sbjct: 105 DSD--DVPMVLVGNKSDL 120

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score = 41.3 bits (98), Expect = 2e-04
 Identities = 35/167 (20%), Positives = 63/167 (37%), Gaps = 25/167 (14%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYP-------DRVPVTIIDT 66
           ++VVVG  G GKS+L          ++      PT    D Y        +   + I+DT
Sbjct: 5   KLVVVGAGGVGKSALTIQLIQNHFVDE----CDPTI--EDSYRKQVVIDGETCLLDILDT 58

Query: 67  SSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCK 124
           +   E     ++ ++  +  +  +A N   +   +   +  +++R+     VP+++ G K
Sbjct: 59  AGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNK 117

Query: 125 LDLRGDHNATSLEEVMGPIMQQFREIETC--VECSATTMIQVPDVFY 169
            DL          +      Q          +E SA T   V D FY
Sbjct: 118 SDL--AARTVESRQA-----QDLARSYGIPYIETSAKTRQGVEDAFY 157

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 30/152 (19%), Positives = 54/152 (35%), Gaps = 40/152 (26%)

Query: 410 RSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQY--AVNVVDQ 467
           R     +  TE  +   ++ G    GKSAL    ++  F + Y PT  + Y   V +  +
Sbjct: 11  RENLYFQGMTEYKL---VVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE 67

Query: 468 PGGNKKTLIL----QE----IPE------EGVKKILSNKEALASCDVTIFVYDSSDEYSW 513
                   IL    QE    + +      EG                 + V+  ++  S+
Sbjct: 68  TC---LLDILDTAGQEEYSAMRDQYMRTGEGF----------------LCVFAINNSKSF 108

Query: 514 KRTKELLVEVARLGEDSGYGVPCLLIASKDDL 545
                   ++ R+ +     VP +L+ +K DL
Sbjct: 109 ADINLYREQIKRVKDSD--DVPMVLVGNKCDL 138

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 34/167 (20%), Positives = 68/167 (40%), Gaps = 25/167 (14%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFY-------PDRVPVTIIDT 66
           ++VVVG  G GKS+L          ++    + PT    D Y        +   + I+DT
Sbjct: 23  KLVVVGAGGVGKSALTIQLIQNHFVDE----YDPTI--EDSYRKQVVIDGETCLLDILDT 76

Query: 67  SSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCK 124
           +   E     ++ ++  +  +  +A N   + + ++  +  +++R+     VP+++ G K
Sbjct: 77  AGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINL-YREQIKRVKDSDDVPMVLVGNK 135

Query: 125 LDLRGDHNATSLEEVMGPIMQQFREIETC--VECSATTMIQVPDVFY 169
            DL         ++       +  +      +E SA T   V D FY
Sbjct: 136 CDL--PTRTVDTKQA-----HELAKSYGIPFIETSAKTRQGVEDAFY 175

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score = 41.7 bits (99), Expect = 2e-04
 Identities = 32/132 (24%), Positives = 55/132 (41%), Gaps = 25/132 (18%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNV-VDQPGGNKKTL-IL---- 477
           ++ ++ G    GKSAL   F+   F E Y PT  + Y   + VD    +   L IL    
Sbjct: 4   YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVD---SSPSVLEILDTAG 60

Query: 478 QE----IPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYG 533
            E    + +  +K          +    I VY   ++ S++  K +  ++ R+       
Sbjct: 61  TEQFASMRDLYIK----------NGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYE--K 108

Query: 534 VPCLLIASKDDL 545
           VP +L+ +K DL
Sbjct: 109 VPVILVGNKVDL 120

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score = 41.7 bits (99), Expect = 2e-04
 Identities = 44/167 (26%), Positives = 70/167 (41%), Gaps = 24/167 (14%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYP-----DRVPVT--IIDT 66
           +VVV+G  G GKS+L     T +  EK    + PT    DFY      D  P    I+DT
Sbjct: 5   KVVVLGSGGVGKSALTVQFVTGTFIEK----YDPTI--EDFYRKEIEVDSSPSVLEILDT 58

Query: 67  SSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCK 124
           + + +     +  +K     +L Y+   Q +   +      ++ R+    KVP+I+ G K
Sbjct: 59  AGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKP-MRDQIIRVKRYEKVPVILVGNK 117

Query: 125 LDLRGDHNATSLEEVMGPIMQQFREIETC--VECSATTMIQVPDVFY 169
           +DL       S  E      +   E   C  +E SA +   V ++F 
Sbjct: 118 VDLE-SEREVSSSEG-----RALAEEWGCPFMETSAKSKTMVDELFA 158

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 38/150 (25%), Positives = 62/150 (41%), Gaps = 35/150 (23%)

Query: 411 SVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNV-VDQPG 469
           + ++ K Q    + + ++ G    GKSAL   F+   F E+Y PT  + Y   V +D  G
Sbjct: 2   AANKPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLD--G 59

Query: 470 GNKKTLIL----QE----IPE------EGVKKILSNKEALASCDVTIFVYDSSDEYSWKR 515
              +  IL    QE    I +      EG                 + V+  ++  S+  
Sbjct: 60  EEVQIDILDTAGQEDYAAIRDNYFRSGEGF----------------LCVFSITEMESFAA 103

Query: 516 TKELLVEVARLGEDSGYGVPCLLIASKDDL 545
           T +   ++ R+ ED    VP LL+ +K DL
Sbjct: 104 TADFREQILRVKEDE--NVPFLLVGNKSDL 131

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* Length = 262

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 27/161 (16%), Positives = 54/161 (33%), Gaps = 34/161 (21%)

Query: 414 RKKQQTERNVFRCLLFGPQNAGKSALLNSFL--ERPFSENYAPTT-----------GEQY 460
            K +Q + N    L+ G    GKS+ +NS +  +      +               G   
Sbjct: 27  GKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFT- 85

Query: 461 AVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV-------YDSSDEYSW 513
            +N++D PG  +   +  +  E  +K  L N+      DV ++V        D  D+   
Sbjct: 86  -INIIDTPGLVEAGYVNHQALEL-IKGFLVNRTI----DVLLYVDRLDVYAVDELDKQVV 139

Query: 514 KRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQD 554
               +        G++       L++       P  ++ + 
Sbjct: 140 IAITQT------FGKEIWCKT-LLVLTHAQFSPPDELSYET 173

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 30/138 (21%), Positives = 55/138 (39%), Gaps = 37/138 (26%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNV-VDQPGGNKKTL-IL---- 477
           ++ ++ G    GKSAL   F ++ F ++Y PT  + Y  +  +D        L +L    
Sbjct: 19  YKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEID---NQWAILDVLDTAG 75

Query: 478 QE----IPE------EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLG 527
           QE    + E      +G                 + VY  +D+ S++        + R+ 
Sbjct: 76  QEEFSAMREQYMRTGDGF----------------LIVYSVTDKASFEHVDRFHQLILRVK 119

Query: 528 EDSGYGVPCLLIASKDDL 545
           +      P +L+A+K DL
Sbjct: 120 DRE--SFPMILVANKVDL 135

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 41.5 bits (97), Expect = 3e-04
 Identities = 28/177 (15%), Positives = 60/177 (33%), Gaps = 22/177 (12%)

Query: 425 RCLLFGPQNAGKSALLNSFLER-PFSE--NYAPTTGEQYAVNVVDQPGGNKKTLILQEIP 481
           R LL G + +GKS++      +   +E      T      +   D    +     + + P
Sbjct: 22  RILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNK----IYKDDISNSSFVNFQIWDFP 77

Query: 482 --EEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLI 539
              +        +         I+V D+ D+Y  +    L + V++  + +   +   + 
Sbjct: 78  GQMDFFDPTFDYEMIFRGTGALIYVIDAQDDY-MEALTRLHITVSKAYKVN-PDMNFEVF 135

Query: 540 ASKDDLKP--YTMAVQDS--ARVTQEL---GIEPPI----PVSMKSKDLNNVFSRII 585
             K D     + +  Q     R   +L   G+E         S+    +   FS+++
Sbjct: 136 IHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYDHSIFEAFSKVV 192

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score = 41.4 bits (98), Expect = 3e-04
 Identities = 29/130 (22%), Positives = 55/130 (42%), Gaps = 15/130 (11%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLIL-----Q 478
            + ++ G   +GK++L   F +  F + Y  T G  + +  +  PG    TL +     Q
Sbjct: 7   LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66

Query: 479 EIPEEGVKKILSN--KEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPC 536
            I      K+L      A       + VYD ++  S++  ++    V ++ E+S      
Sbjct: 67  TI----GGKMLDKYIYGAQG----VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLV 118

Query: 537 LLIASKDDLK 546
            L+ +K DL+
Sbjct: 119 ALVGNKIDLE 128

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score = 41.0 bits (97), Expect = 3e-04
 Identities = 39/146 (26%), Positives = 58/146 (39%), Gaps = 25/146 (17%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
            R LL G  NAGK+ LL        S    PT G             N K++  Q     
Sbjct: 17  VRILLLGLDNAGKTTLLKQLASEDISHI-TPTQG------------FNIKSVQSQGFKLN 63

Query: 484 -----GVKKILSN-KEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCL 537
                G +KI    +    + D+ I+V DS+D   ++ T + L E+  L E+    VP L
Sbjct: 64  VWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTEL--LEEEKLSCVPVL 121

Query: 538 LIASKDDLKPYTMAVQDSARVTQELG 563
           + A+K DL        +   + + L 
Sbjct: 122 IFANKQDL-LTAAPASE---IAEGLN 143

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score = 41.7 bits (98), Expect = 3e-04
 Identities = 30/205 (14%), Positives = 68/205 (33%), Gaps = 50/205 (24%)

Query: 6   GSSSRTGVRVVVVGDRGTGKSSLI-----------------AAAATESVPEKVPPVHAPT 48
           G   ++  + V++G+   GKSS++                 A+  T  V      +   +
Sbjct: 1   GMEKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNS 60

Query: 49  RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKR----------------------ADAV 86
               +   + +        ++  N    N    +                      A   
Sbjct: 61  NNEKNNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCA 120

Query: 87  VLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQ 146
           ++ +  +  +TL R  + W+ +L+       II+   K+D   +     + EV     Q+
Sbjct: 121 IVVFDISNSNTLDRAKT-WVNQLKISS-NYIIILVANKIDK--NKFQVDILEV-----QK 171

Query: 147 FREIETC--VECSATTMIQVPDVFY 169
           + +      ++ SA T   + ++FY
Sbjct: 172 YAQDNNLLFIQTSAKTGTNIKNIFY 196

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score = 41.4 bits (98), Expect = 3e-04
 Identities = 28/139 (20%), Positives = 56/139 (40%), Gaps = 39/139 (28%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNV-VDQPGGNKKTL-IL---- 477
            +  + G ++ GKS+L   F+E  F ++Y PT    +   + V+   G +  L ++    
Sbjct: 7   RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVN---GQEYHLQLVDTAG 63

Query: 478 QE----IPE------EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARL- 526
           Q+     P+       G                 I VY  +   S++  K +  ++  + 
Sbjct: 64  QDEYSIFPQTYSIDINGY----------------ILVYSVTSIKSFEVIKVIHGKLLDMV 107

Query: 527 GEDSGYGVPCLLIASKDDL 545
           G+     +P +L+ +K DL
Sbjct: 108 GKVQ---IPIMLVGNKKDL 123

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* Length = 476

 Score = 42.5 bits (101), Expect = 4e-04
 Identities = 34/169 (20%), Positives = 56/169 (33%), Gaps = 53/169 (31%)

Query: 433 NAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKT--------LILQEIP--- 481
           NAGKS LLN+ L            G++ A+ V   PG    T         I  +     
Sbjct: 243 NAGKSTLLNTLL------------GQERAI-VSHMPG----TTRDYIEECFIHDKTMFRL 285

Query: 482 --------------EEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLG 527
                          EG+++   ++  +A  D+ +++ D   E    R  + L E+  L 
Sbjct: 286 TDTAGLREAGEEIEHEGIRR---SRMKMAEADLILYLLDLGTE----RLDDELTEIRELK 338

Query: 528 EDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSKD 576
                    L +A+K D            R   +      I +S  + D
Sbjct: 339 AAHP-AAKFLTVANKLDRAA---NADALIRAIADGTGTEVIGISALNGD 383

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 31/148 (20%), Positives = 58/148 (39%), Gaps = 25/148 (16%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
            + ++ G  NAGK+ +L  F         +PT G     NV        + +++      
Sbjct: 17  HKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIG----SNV--------EEIVINNTRFL 63

Query: 484 -----GVKKILSN-KEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCL 537
                G + + S+      + +  I V DS+D      T+E L ++  L  +       L
Sbjct: 64  MWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKM--LAHEDLRKAGLL 121

Query: 538 LIASKDDLKPYTMAVQDSARVTQELGIE 565
           + A+K D+    M V +   ++Q L + 
Sbjct: 122 IFANKQDV-KECMTVAE---ISQFLKLT 145

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score = 40.3 bits (95), Expect = 6e-04
 Identities = 33/148 (22%), Positives = 54/148 (36%), Gaps = 29/148 (19%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTG--------EQYAVNVVDQPGGNKKTL 475
            R L+ G   AGK+ +L             PT G        +   +NV D  GG     
Sbjct: 19  LRILILGLDGAGKTTILYRLQIGEVVTT-KPTIGFNVETLSYKNLKLNVWDL-GGQTSIR 76

Query: 476 ILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVP 535
                     +   ++  A+      IFV DS+D+       + L  +  L E+      
Sbjct: 77  PY-------WRCYYADTAAV------IFVVDSTDKDRMSTASKELHLM--LQEEELQDAA 121

Query: 536 CLLIASKDDLKPYTMAVQDSARVTQELG 563
            L+ A+K D  P  ++  +   V++EL 
Sbjct: 122 LLVFANKQDQ-PGALSASE---VSKELN 145

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* Length = 270

 Score = 40.7 bits (95), Expect = 9e-04
 Identities = 22/129 (17%), Positives = 42/129 (32%), Gaps = 23/129 (17%)

Query: 414 RKKQQTERNVFRCLLFGPQNAGKSALLNSFL--ERPFSENYAPTTGEQYA---------V 462
              +Q + N    L+ G    GKS+ +NS +         +                  +
Sbjct: 30  GNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTL 89

Query: 463 NVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV-------YDSSDEYSWKR 515
           N++D PG     LI      +    I+ +     + DV ++V        D+ D+   K 
Sbjct: 90  NIIDTPG-----LIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKA 144

Query: 516 TKELLVEVA 524
             +   +  
Sbjct: 145 ITDSFGKGI 153

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164

 Score = 39.5 bits (93), Expect = 9e-04
 Identities = 36/140 (25%), Positives = 56/140 (40%), Gaps = 15/140 (10%)

Query: 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG 484
           R L+ G   AGK+ +L             PT G  + V  V+       +  + ++   G
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY---KNISFTVWDV--GG 53

Query: 485 VKKILSN-KEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKD 543
             KI    +    +    IFV DS+D       +E L+ +  L ED       L+ A+K 
Sbjct: 54  QDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRM--LAEDELRDAVLLVFANKQ 111

Query: 544 DLKPYTMAVQDSARVTQELG 563
           DL P  M   +   +T +LG
Sbjct: 112 DL-PNAMNAAE---ITDKLG 127

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	643
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	100.0
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	100.0
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	100.0
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	99.95
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	99.95
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.92
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.92
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.92
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.92
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.92
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.92
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.92
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.92
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.92
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.92
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.92
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.92
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.92
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.92
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.92
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.92
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.92
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.92
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.92
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.92
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.92
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.92
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.92
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.92
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.92
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.92
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.91
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.91
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.91
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.91
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.91
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.91
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.91
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.91
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.91
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.91
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.91
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.91
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.91
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.91
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.91
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.91
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.91
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.91
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.91
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.91
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.91
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.91
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.91
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.91
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.91
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.91
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.91
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.91
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.91
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.91
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.91
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.91
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.91
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.91
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.91
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.91
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.91
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.91
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.91
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.91
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.91
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.91
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.91
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.91
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.91
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.91
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.91
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.91
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.91
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.91
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.91
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.91
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.91
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.91
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.91
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.91
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.91
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.91
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.91
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.91
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.9
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.9
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.9
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.9
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.9
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.9
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.9
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.9
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.9
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.9
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.9
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.9
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.9
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.9
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.9
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.9
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.9
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.9
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.9
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.9
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.9
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.9
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.9
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.9
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.9
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.9
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.9
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.9
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.9
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.9
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.9
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.9
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.9
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.9
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.9
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.9
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.9
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.9
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.9
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.9
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.9
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.9
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.9
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.9
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.9
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.9
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.9
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.9
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.9
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.9
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.9
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.9
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.89
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.89
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.89
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.89
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.89
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.89
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.89
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.89
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.89
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.89
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.89
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.89
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.89
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.89
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.89
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.89
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.89
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.89
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.89
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.88
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.88
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.88
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.88
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.88
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.88
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.88
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.88
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.88
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.88
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.88
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.88
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.88
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.88
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.88
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.88
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.87
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.87
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.87
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.87
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.87
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.87
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.87
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.87
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.87
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.78
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.86
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.86
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.86
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.86
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.86
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.86
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.86
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.86
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.86
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.86
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.86
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.86
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.86
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.86
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.85
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.85
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.76
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.85
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.84
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.84
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.84
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.84
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.84
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.83
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.83
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.83
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.83
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.83
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.83
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.83
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.83
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.83
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.83
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.83
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.83
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.83
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.83
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.83
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.83
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.82
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.82
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.82
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.82
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.82
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.82
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.82
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.82
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.82
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.82
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.81
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.81
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.81
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.81
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.81
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.81
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.8
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.8
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.8
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.8
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.8
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.8
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.79
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.79
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.79
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.78
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.78
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.77
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.77
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.76
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.76
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.76
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.75
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.75
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.75
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.75
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.75
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.74
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.73
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.73
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.73
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.72
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.72
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.72
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.72
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.71
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.71
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.71
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.7
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.69
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.69
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.69
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.67
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.67
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.67
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.67
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.67
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.67
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.65
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.65
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.65
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.65
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.65
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.64
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.64
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.64
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.64
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.64
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.64
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.64
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.64
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.63
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.63
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.63
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.63
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.63
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.63
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.63
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.63
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.63
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.63
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.62
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.62
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.62
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.62
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.61
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.61
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.61
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.6
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.59
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.59
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.58
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.58
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.58
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.58
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.57
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.57
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.57
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.57
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.57
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.57
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.56
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.56
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.55
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.55
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.55
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.55
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.55
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.54
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.54
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.54
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.54
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.54
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.53
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.53
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.53
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.52
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.52
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.5
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.49
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.49
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.49
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.49
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.49
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.48
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.47
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.46
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.46
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.45
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.45
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.44
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.44
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.43
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.43
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.41
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.41
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.41
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.39
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	99.39
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.39
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.39
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.39
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.39
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.38
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.38
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.38
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.38
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.37
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.36
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.36
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.35
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.35
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.35
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.34
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.34
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.32
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.31
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.31
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.31
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.3
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.29
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.29
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.27
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.27
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.25
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.24
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.23
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.23
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.23
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.23
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.23
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.23
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.22
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.22
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.2
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.2
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.2
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.18
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.17
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.17
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.13
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.08
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.05
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	99.03
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	98.98
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	98.94
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	98.88
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	98.87
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	98.84
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	98.81
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.77
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	98.75
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	98.63
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	98.63
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	98.61
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	98.61
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	98.54
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.49
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.46
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.46
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.44
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.44
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.39
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	98.36
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.33
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.32
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	98.29
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.16
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.11
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.07
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.07
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.04
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.03
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	97.92
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	97.79
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	97.72
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	97.69
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.63
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.57
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.52
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	97.47
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	97.35
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.22
2mys_B	166	Myosin; muscle protein, motor protein; HET: MLY; 2	96.98
3fwb_A	161	Cell division control protein 31; gene gating, com	96.85
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	96.83
3j04_B	143	Myosin regulatory light chain 2, smooth muscle MA	96.83
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	96.78
2xxa_A	433	Signal recognition particle protein; protein trans	96.73
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	96.72
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	96.71
1nya_A	176	Calerythrin; EF-hand, metal binding protein; NMR {	96.7
1q80_A	174	SCP, sarcoplasmic calcium-binding protein; all-alp	96.64
3ox6_A	153	Calcium-binding protein 1; EF-hand, calcium-sensor	96.63
3qrx_A	169	Centrin; calcium-binding, EF-hand, cell division,	96.61
2ccm_A	191	Calexcitin; EF hand, calcium, signaling protein; 1	96.6
2mys_C	149	Myosin; muscle protein, motor protein; HET: MLY; 2	96.59
1dtl_A	161	Cardiac troponin C; helix-turn-helix, structural p	96.56
2aao_A	166	CDPK, calcium-dependent protein kinase, isoform AK	96.55
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	96.54
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	96.52
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	96.51
3akb_A	166	Putative calcium binding protein; EF-hand, metal b	96.5
2sas_A	185	Sarcoplasmic calcium-binding protein; 2.40A {Branc	96.43
2xxa_A	433	Signal recognition particle protein; protein trans	96.41
3dtp_E	196	RLC, myosin regulatory light chain; muscle protein	96.38
2bl0_C	142	Myosin regulatory light chain; muscle protein, sli	96.38
2obh_A	143	Centrin-2; DNA repair complex EF hand superfamily	96.37
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	96.36
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	96.36
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	96.33
3u0k_A	440	Rcamp; fluorescent protein, calcium binding, EF-ha	96.31
4ds7_A	147	Calmodulin, CAM; protein binding, metal binding, s	96.29
1wdc_B	156	Scallop myosin; calcium binding protein, muscle pr	96.27
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	96.2
2lvv_A	226	Flagellar calcium-binding protein TB-24; EF-hand,	96.18
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	96.18
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	96.09
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	96.04
2bl0_B	145	Myosin regulatory light chain; muscle protein, sli	95.97
1exr_A	148	Calmodulin; high resolution, disorder, metal trans	95.96
2ovk_B	153	RLC, myosin regulatory light chain LC-2, mantle mu	95.95
2lmt_A	148	Calmodulin-related protein 97A; spermatogenesis, m	95.94
3i5g_B	153	Myosin regulatory light chain LC-2, mantle muscle;	95.94
1top_A	162	Troponin C; contractIle system protein; 1.78A {Gal	95.91
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	95.88
1y1x_A	191	Leishmania major homolog of programmed cell death	95.83
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	95.81
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	95.79
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	95.66
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	95.65
2jnf_A	158	Troponin C; stretch activated muscle contraction,	95.63
3cs1_A	219	Flagellar calcium-binding protein; myristoylated,	95.62

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=100.00  E-value=1e-40  Score=358.07  Aligned_cols=325  Identities=18%  Similarity=0.172  Sum_probs=218.3

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCCCCCCeeeCCcccCCceeEEEEeCCCCC--------cchhhhHHhhc
Q 006490           12 GVRVVVVGDRGTGKSSLIAAAATESVP--EKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSL--------ENKGKLNEELK   81 (643)
Q Consensus        12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~--------~~~~~~~~~~~   81 (643)
                      ..+|+|+|+||||||||+|+|++..+.  .+.++++.. +....+...+..+.+|||||++        .+...+..+++
T Consensus         3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d-~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   81 (436)
T 2hjg_A            3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRD-RIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD   81 (436)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccc-eEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            368999999999999999999998753  334443221 2334555667889999999986        34455668899


Q ss_pred             cCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccC
Q 006490           82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM  161 (643)
Q Consensus        82 ~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  161 (643)
                      +||++|+|+|++++.+..+.  .+...+++.  ++|+++|+||+|+......     ..+.+  .++ +..++++||++|
T Consensus        82 ~ad~il~vvD~~~~~~~~d~--~~~~~l~~~--~~pvilv~NK~D~~~~~~~-----~~~~~--~lg-~~~~~~iSA~~g  149 (436)
T 2hjg_A           82 EADVIIFMVNGREGVTAADE--EVAKILYRT--KKPVVLAVNKLDNTEMRAN-----IYDFY--SLG-FGEPYPISGTHG  149 (436)
T ss_dssp             HCSEEEEEEETTTCSCHHHH--HHHHHHTTC--CSCEEEEEECCCC-----C-----CCSSG--GGS-SCCCEECBTTTT
T ss_pred             hCCEEEEEEeCCCCCCHHHH--HHHHHHHHc--CCCEEEEEECccCccchhh-----HHHHH--HcC-CCCeEEEeCcCC
Confidence            99999999999888776543  366666654  8999999999998754221     11111  222 236899999999


Q ss_pred             CChhHHHHHHHHHHhCCCCCCCccccccchHHHHHHHHhhhhhcCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHH
Q 006490          162 IQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRV  241 (643)
Q Consensus       162 ~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~  241 (643)
                      .|++++++++.+.+.....                                                             
T Consensus       150 ~gv~~L~~~i~~~l~~~~~-------------------------------------------------------------  168 (436)
T 2hjg_A          150 LGLGDLLDAVAEHFKNIPE-------------------------------------------------------------  168 (436)
T ss_dssp             BTHHHHHHHHHHTGGGCCS-------------------------------------------------------------
T ss_pred             CChHHHHHHHHHhcCcccc-------------------------------------------------------------
Confidence            9999999977654221000                                                             


Q ss_pred             HHhhccCCcCCCCcChhhHHHHHHHHHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHh
Q 006490          242 VQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGI  321 (643)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~  321 (643)
                                                                                                      
T Consensus       169 --------------------------------------------------------------------------------  168 (436)
T 2hjg_A          169 --------------------------------------------------------------------------------  168 (436)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhcCCCCCCCChhHHhhhhccCCCCCCCCCCCCCCccccCCcccchhhhhhhhhhhhccCHHHHHHHHHHhcCCCCcc
Q 006490          322 FGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGGDPA  401 (643)
Q Consensus       322 f~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~l~~~g~~~~~~  401 (643)
                                                                                                      
T Consensus       169 --------------------------------------------------------------------------------  168 (436)
T 2hjg_A          169 --------------------------------------------------------------------------------  168 (436)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccchhccchhhhhhhccccCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCcEEEEEEecC
Q 006490          402 AALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEI  480 (643)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~-~t~~~~~~~~~v~~~g~~~~~~i~d~~  480 (643)
                                     .......+||+++|+||||||||+|+|++.++..++. ++++.+.....+...|  ..+.+|||+
T Consensus       169 ---------------~~~~~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~--~~~~l~DT~  231 (436)
T 2hjg_A          169 ---------------TKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ--QEFVIVDTA  231 (436)
T ss_dssp             ---------------SCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETT--EEEEETTHH
T ss_pred             ---------------ccccccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECC--eEEEEEECC
Confidence                           0001134799999999999999999999998764443 4333333344455553  457889999


Q ss_pred             Cc----------hhhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccc
Q 006490          481 PE----------EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM  550 (643)
Q Consensus       481 g~----------~~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~  550 (643)
                      |+          +.+..+ +...+++.||++++|+|++++.+++.. .|+..+...      ++|+++|+||+|+.+...
T Consensus       232 G~~~~~~~~~~~e~~~~~-~~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~~------~~~iiiv~NK~Dl~~~~~  303 (436)
T 2hjg_A          232 GMRKKGKVYETTEKYSVL-RALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHEA------GKAVVIVVNKWDAVDKDE  303 (436)
T ss_dssp             HHTCBTTBCCCCSHHHHH-HHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHHT------TCEEEEEEECGGGSCCCT
T ss_pred             CcCcCccccchHHHHHHH-HHHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHHc------CCcEEEEEECccCCCcch
Confidence            97          333322 245688999999999999999887664 566666553      899999999999986543


Q ss_pred             c--HHHHHHHHHHh---CCCCcEEeeeccC-CHHHHHHHHHHHHhCCCCCC
Q 006490          551 A--VQDSARVTQEL---GIEPPIPVSMKSK-DLNNVFSRIIWAAEHPHLNI  595 (643)
Q Consensus       551 ~--~~~~~~~~~~~---~~~~~~~vSa~~g-~i~~l~~~l~~~~~~~~~~~  595 (643)
                      .  .+..+++.+.+   +..+++++||++| |++++|+.+.+.+..+..+.
T Consensus       304 ~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~~~~~~~  354 (436)
T 2hjg_A          304 STMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHSLRV  354 (436)
T ss_dssp             THHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHHHHHHHHHHHhhcCC
Confidence            2  22334444443   3346999999999 99999999999887554443

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=100.00  E-value=1.8e-38  Score=340.93  Aligned_cols=330  Identities=17%  Similarity=0.174  Sum_probs=213.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC--CCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcc---------hhhhHHhhcc
Q 006490           14 RVVVVGDRGTGKSSLIAAAATESV--PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLEN---------KGKLNEELKR   82 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~---------~~~~~~~~~~   82 (643)
                      +|+|+|+||||||||+|+|++...  +.+.|+++.. +....+...+..+.+|||||++..         ...+..++++
T Consensus         3 ~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d-~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~   81 (439)
T 1mky_A            3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRD-PVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE   81 (439)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------C-CSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccc-eeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHh
Confidence            799999999999999999999873  4555553322 233344556778999999998742         2345678999


Q ss_pred             CCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCC
Q 006490           83 ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMI  162 (643)
Q Consensus        83 ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  162 (643)
                      ||++|+|+|+++..+..+.  .+..++++.  ++|+++|+||+|+...    ...+...++. .++ +..++++||++|.
T Consensus        82 ad~il~V~D~~~~~~~~d~--~i~~~l~~~--~~p~ilv~NK~D~~~~----~~~~~~~~~~-~lg-~~~~~~iSA~~g~  151 (439)
T 1mky_A           82 ADLVLFVVDGKRGITKEDE--SLADFLRKS--TVDTILVANKAENLRE----FEREVKPELY-SLG-FGEPIPVSAEHNI  151 (439)
T ss_dssp             CSEEEEEEETTTCCCHHHH--HHHHHHHHH--TCCEEEEEESCCSHHH----HHHHTHHHHG-GGS-SCSCEECBTTTTB
T ss_pred             CCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCCEEEEEeCCCCccc----cHHHHHHHHH-hcC-CCCEEEEeccCCC
Confidence            9999999999887665442  355556655  7999999999997521    0111102222 333 2358999999999


Q ss_pred             ChhHHHHHHHHHHhCCCCCCCccccccchHHHHHHHHhhhhhcCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHH
Q 006490          163 QVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVV  242 (643)
Q Consensus       163 gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~~  242 (643)
                      |++++++.+.+.+.......                                                            
T Consensus       152 gv~~L~~~i~~~l~~~~~~~------------------------------------------------------------  171 (439)
T 1mky_A          152 NLDTMLETIIKKLEEKGLDL------------------------------------------------------------  171 (439)
T ss_dssp             SHHHHHHHHHHHHHHTTCCS------------------------------------------------------------
T ss_pred             CHHHHHHHHHHhcccccccc------------------------------------------------------------
Confidence            99999998766532100000                                                            


Q ss_pred             HhhccCCcCCCCcChhhHHHHHHHHHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhh
Q 006490          243 QEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIF  322 (643)
Q Consensus       243 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f  322 (643)
                                                                            .                         
T Consensus       172 ------------------------------------------------------~-------------------------  172 (439)
T 1mky_A          172 ------------------------------------------------------E-------------------------  172 (439)
T ss_dssp             ------------------------------------------------------S-------------------------
T ss_pred             ------------------------------------------------------h-------------------------
Confidence                                                                  0                         


Q ss_pred             hhhcCCCCCCCChhHHhhhhccCCCCCCCCCCCCCCccccCCcccchhhhhhhhhhhhccCHHHHHHHHHHhcCCCCccc
Q 006490          323 GLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGGDPAA  402 (643)
Q Consensus       323 ~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~l~~~g~~~~~~~  402 (643)
                                                                                                      
T Consensus       173 --------------------------------------------------------------------------------  172 (439)
T 1mky_A          173 --------------------------------------------------------------------------------  172 (439)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cchhccchhhhhhhccccCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCcEEEEEEecCC
Q 006490          403 ALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIP  481 (643)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~-~t~~~~~~~~~v~~~g~~~~~~i~d~~g  481 (643)
                                  . .......+||+|+|++|||||||+|+|++..+..+++ ++++.+.....+...|  ..+.+|||+|
T Consensus       173 ------------~-~~~~~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g--~~~~l~Dt~G  237 (439)
T 1mky_A          173 ------------S-KPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDG--RKYVFVDTAG  237 (439)
T ss_dssp             ------------S-CCCCCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETT--EEEEESSCSC
T ss_pred             ------------h-ccccccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECC--EEEEEEECCC
Confidence                        0 0001235899999999999999999999988755444 4333223333445553  3567899999


Q ss_pred             chhhhhh----------hccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc
Q 006490          482 EEGVKKI----------LSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA  551 (643)
Q Consensus       482 ~~~~~~~----------~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~  551 (643)
                      ......+          .+...+++.+|++++|+|++++.+++. ..+...+...      ++|+++|+||||+.+....
T Consensus       238 ~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~-~~i~~~l~~~------~~~~ilv~NK~Dl~~~~~~  310 (439)
T 1mky_A          238 LRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQD-QRMAGLMERR------GRASVVVFNKWDLVVHREK  310 (439)
T ss_dssp             C-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHH-HHHHHHHHHT------TCEEEEEEECGGGSTTGGG
T ss_pred             CccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHH-HHHHHHHHHc------CCCEEEEEECccCCCchhh
Confidence            7432221          123467889999999999998777554 3333333333      8999999999999764431


Q ss_pred             --HHHHHHHHHHh---CCCCcEEeeeccC-CHHHHHHHHHHHHhCCCCCC
Q 006490          552 --VQDSARVTQEL---GIEPPIPVSMKSK-DLNNVFSRIIWAAEHPHLNI  595 (643)
Q Consensus       552 --~~~~~~~~~~~---~~~~~~~vSa~~g-~i~~l~~~l~~~~~~~~~~~  595 (643)
                        .+..+.+.+.+   +..+++++||++| |++++|+.+.+.+..+..++
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~~i  360 (439)
T 1mky_A          311 RYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYASYTTKV  360 (439)
T ss_dssp             CHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHhccCCCCcEEEEECCCCCCHHHHHHHHHHHHHhhcccC
Confidence              22233344443   3446999999999 99999999999886555444

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=100.00  E-value=1.8e-39  Score=350.30  Aligned_cols=329  Identities=18%  Similarity=0.182  Sum_probs=218.2

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCCCCCCeeeCCcccCCceeEEEEeCCCCC--------cchhhhHH
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVP--EKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSL--------ENKGKLNE   78 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~--------~~~~~~~~   78 (643)
                      .+...+|+|+|++|||||||+|+|++..+.  .+.+++.. .+....+...+..+.+|||||+.        .+......
T Consensus        20 ~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~-~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~   98 (456)
T 4dcu_A           20 HMGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTR-DRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEI   98 (456)
T ss_dssp             ---CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHH
T ss_pred             hcCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcce-eEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHh
Confidence            455679999999999999999999998753  33444222 22344555677899999999943        44556668


Q ss_pred             hhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCc
Q 006490           79 ELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSA  158 (643)
Q Consensus        79 ~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  158 (643)
                      +++.+|++|+|+|..+..+...  ..+...+++.  ++|+++|+||+|+......     ..+.+...++   .++++||
T Consensus        99 ~~~~ad~il~VvD~~~~~~~~d--~~l~~~l~~~--~~pvilV~NK~D~~~~~~~-----~~e~~~lg~~---~~~~iSA  166 (456)
T 4dcu_A           99 AMDEADVIIFMVNGREGVTAAD--EEVAKILYRT--KKPVVLAVNKLDNTEMRAN-----IYDFYSLGFG---EPYPISG  166 (456)
T ss_dssp             HHHHCSEEEEEEESSSCSCHHH--HHHHHHHTTC--CSCEEEEEECC--------------CCSGGGSSS---SEEECCT
T ss_pred             hHhhCCEEEEEEeCCCCCChHH--HHHHHHHHHc--CCCEEEEEECccchhhhhh-----HHHHHHcCCC---ceEEeec
Confidence            8999999999999776544443  3466677665  8999999999998653211     1122222333   5789999


Q ss_pred             ccCCChhHHHHHHHHHHhCCCCCCCccccccchHHHHHHHHhhhhhcCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHH
Q 006490          159 TTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGV  238 (643)
Q Consensus       159 ~~~~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~  238 (643)
                      ++|.|+.++++.+.+.+....                                                           
T Consensus       167 ~~g~gv~~L~~~i~~~l~~~~-----------------------------------------------------------  187 (456)
T 4dcu_A          167 THGLGLGDLLDAVAEHFKNIP-----------------------------------------------------------  187 (456)
T ss_dssp             TTCTTHHHHHHHHHTTGGGSC-----------------------------------------------------------
T ss_pred             ccccchHHHHHHHHhhccccc-----------------------------------------------------------
Confidence            999999999987643211000                                                           


Q ss_pred             HHHHHhhccCCcCCCCcChhhHHHHHHHHHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHH
Q 006490          239 KRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFL  318 (643)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~  318 (643)
                                                                                .                     
T Consensus       188 ----------------------------------------------------------~---------------------  188 (456)
T 4dcu_A          188 ----------------------------------------------------------E---------------------  188 (456)
T ss_dssp             ----------------------------------------------------------S---------------------
T ss_pred             ----------------------------------------------------------c---------------------
Confidence                                                                      0                     


Q ss_pred             HHhhhhhcCCCCCCCChhHHhhhhccCCCCCCCCCCCCCCccccCCcccchhhhhhhhhhhhccCHHHHHHHHHHhcCCC
Q 006490          319 RGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGG  398 (643)
Q Consensus       319 ~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~l~~~g~~~  398 (643)
                                                                                                      
T Consensus       189 --------------------------------------------------------------------------------  188 (456)
T 4dcu_A          189 --------------------------------------------------------------------------------  188 (456)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CccccchhccchhhhhhhccccCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCcEEEEEE
Q 006490          399 DPAAALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLIL  477 (643)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~-~t~~~~~~~~~v~~~g~~~~~~i~  477 (643)
                                        .......++|+++|.+|||||||+|+|++.++..+.. ++++.+.....+...|  ..+.+|
T Consensus       189 ------------------~~~~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~l~  248 (456)
T 4dcu_A          189 ------------------TKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ--QEFVIV  248 (456)
T ss_dssp             ------------------SCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETT--EEEEET
T ss_pred             ------------------cccccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECC--ceEEEE
Confidence                              0001235799999999999999999999887554443 4333333333444443  478899


Q ss_pred             ecCC----------chhhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC
Q 006490          478 QEIP----------EEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP  547 (643)
Q Consensus       478 d~~g----------~~~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~  547 (643)
                      ||+|          ++.+..+ +...+++.||++++|+|++++.+ +....|...+...      ++|+|+|+||||+.+
T Consensus       249 DT~G~~~~~~~~~~~e~~~~~-~~~~~~~~ad~~llviD~~~~~~-~~~~~~~~~~~~~------~~~~ilv~NK~Dl~~  320 (456)
T 4dcu_A          249 DTAGMRKKGKVYETTEKYSVL-RALKAIDRSEVVAVVLDGEEGII-EQDKRIAGYAHEA------GKAVVIVVNKWDAVD  320 (456)
T ss_dssp             TGGGTTTBTTBCCCCSHHHHH-HHHHHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHHT------TCEEEEEEECGGGSC
T ss_pred             ECCCCCcCcccchHHHHHHHH-HHHHHHhhCCEEEEEEeCCCCcC-HHHHHHHHHHHHc------CCCEEEEEEChhcCC
Confidence            9999          5555443 34568899999999999998765 4455666666553      899999999999986


Q ss_pred             cccc-HHHHHHHHHHh----CCCCcEEeeeccC-CHHHHHHHHHHHHhCCCCCCC
Q 006490          548 YTMA-VQDSARVTQEL----GIEPPIPVSMKSK-DLNNVFSRIIWAAEHPHLNIP  596 (643)
Q Consensus       548 ~~~~-~~~~~~~~~~~----~~~~~~~vSa~~g-~i~~l~~~l~~~~~~~~~~~~  596 (643)
                      .+.. .++..+.++..    +..++++|||++| |++++|+.+.+.+..+....+
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~~~~  375 (456)
T 4dcu_A          321 KDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHSLRVQ  375 (456)
T ss_dssp             CCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHHTCCCC
T ss_pred             CchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHHHHHhcccCC
Confidence            5433 23333333333    3456999999999 999999999998865554443

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=99.95  E-value=6.3e-28  Score=232.68  Aligned_cols=163  Identities=20%  Similarity=0.342  Sum_probs=137.9

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i  501 (643)
                      +.+||+|+|++|||||||+++|+++.+...+.||++.++....+...+...++.+|||+|++.+..+  +..+++.+|++
T Consensus        12 k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l--~~~~~~~a~~~   89 (216)
T 4dkx_A           12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSL--IPSYIRDSAAA   89 (216)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGG--HHHHHTTCSEE
T ss_pred             CcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhH--HHHHhccccEE
Confidence            3589999999999999999999999999999899998888888888877888999999999999998  78899999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHH
Q 006490          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNN  579 (643)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~  579 (643)
                      ++|||++++.||+.+..|+..+......   +.|++||+||+|+.+.+++ .++++++++.+++. +++|||++| ||++
T Consensus        90 ilv~di~~~~Sf~~i~~~~~~i~~~~~~---~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~-~~e~SAktg~nV~e  165 (216)
T 4dkx_A           90 VVVYDITNVNSFQQTTKWIDDVRTERGS---DVIIMLVGNKTDLADKRQVSIEEGERKAKELNVM-FIETSAKAGYNVKQ  165 (216)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTT---SSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEEEBTTTTBSHHH
T ss_pred             EEEeecchhHHHHHHHHHHHHHHHhcCC---CCeEEEEeeccchHhcCcccHHHHhhHHHHhCCe-eEEEeCCCCcCHHH
Confidence            9999999999999999999998876543   7999999999999876554 77899999999987 999999999 9999


Q ss_pred             HHHHHHHHHhC
Q 006490          580 VFSRIIWAAEH  590 (643)
Q Consensus       580 l~~~l~~~~~~  590 (643)
                      +|+.|++.+..
T Consensus       166 ~F~~i~~~i~~  176 (216)
T 4dkx_A          166 LFRRVAAALPG  176 (216)
T ss_dssp             HHHHHHHHC--
T ss_pred             HHHHHHHHHHh
Confidence            99999998753

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=99.95  E-value=6.2e-28  Score=232.69  Aligned_cols=172  Identities=18%  Similarity=0.238  Sum_probs=131.3

Q ss_pred             CCCCCCCC-CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhH
Q 006490            1 MPGGSGSS-SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLN   77 (643)
Q Consensus         1 m~~~~~~~-~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~   77 (643)
                      |+...+.. .++.+||+|+|++|||||||+++|+.+.|...+.++.+...  ....+....+.+.||||+|++++..+++
T Consensus         1 ms~~~~~~~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~   80 (216)
T 4dkx_A            1 MSTGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIP   80 (216)
T ss_dssp             ------------CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHH
T ss_pred             CCCCCCCCCCCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHH
Confidence            55544433 45689999999999999999999999999887655544322  3445566778999999999999999999


Q ss_pred             HhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEe
Q 006490           78 EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVEC  156 (643)
Q Consensus        78 ~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (643)
                      .+++.+|++++|||++++.+++.+.. |+..++.. .++.|+||||||+|+...+.+ . .+..+.++++++  ..+++|
T Consensus        81 ~~~~~a~~~ilv~di~~~~Sf~~i~~-~~~~i~~~~~~~~piilVgNK~Dl~~~r~V-~-~~e~~~~a~~~~--~~~~e~  155 (216)
T 4dkx_A           81 SYIRDSAAAVVVYDITNVNSFQQTTK-WIDDVRTERGSDVIIMLVGNKTDLADKRQV-S-IEEGERKAKELN--VMFIET  155 (216)
T ss_dssp             HHHTTCSEEEEEEETTCHHHHHTHHH-HHHHHHHHHTTSSEEEEEEECTTCGGGCCS-C-HHHHHHHHHHHT--CEEEEE
T ss_pred             HHhccccEEEEEeecchhHHHHHHHH-HHHHHHHhcCCCCeEEEEeeccchHhcCcc-c-HHHHhhHHHHhC--CeeEEE
Confidence            99999999999999999999999984 88888654 568999999999999876665 3 445678888887  369999


Q ss_pred             CcccCCChhHHHHHHHHHHhC
Q 006490          157 SATTMIQVPDVFYYAQKAVLH  177 (643)
Q Consensus       157 Sa~~~~gi~~l~~~i~~~~~~  177 (643)
                      ||++|.||+++|+.+++.+..
T Consensus       156 SAktg~nV~e~F~~i~~~i~~  176 (216)
T 4dkx_A          156 SAKAGYNVKQLFRRVAAALPG  176 (216)
T ss_dssp             BTTTTBSHHHHHHHHHHHC--
T ss_pred             eCCCCcCHHHHHHHHHHHHHh
Confidence            999999999999999988653

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.92  E-value=8.4e-25  Score=211.65  Aligned_cols=168  Identities=17%  Similarity=0.243  Sum_probs=139.4

Q ss_pred             ccCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccC
Q 006490          419 TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASC  498 (643)
Q Consensus       419 ~~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~a  498 (643)
                      .....+||+|+|.+|||||||+++|++..+...+.||++..+ ...+...+....+.+||++|++.+..+  +..+++.+
T Consensus        23 ~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~   99 (214)
T 3q3j_B           23 PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNV--RPLCYSDS   99 (214)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTT--GGGGCTTC
T ss_pred             CccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHH--HHHHcCCC
Confidence            345579999999999999999999999999888888887765 345666766778899999999988887  77889999


Q ss_pred             CEEEEEEeCCChhhHHH-HHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCc-------------cccHHHHHHHHHHhCC
Q 006490          499 DVTIFVYDSSDEYSWKR-TKELLVEVARLGEDSGYGVPCLLIASKDDLKPY-------------TMAVQDSARVTQELGI  564 (643)
Q Consensus       499 d~illv~D~s~~~s~~~-~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~-------------~~~~~~~~~~~~~~~~  564 (643)
                      |++|+|||++++.+|+. +..|+..+.....    +.|+++|+||+|+...             ....+....+++.+++
T Consensus       100 d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  175 (214)
T 3q3j_B          100 DAVLLCFDISRPETVDSALKKWRTEILDYCP----STRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGA  175 (214)
T ss_dssp             SEEEEEEETTCTHHHHHHHTHHHHHHHHHCT----TSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTC
T ss_pred             eEEEEEEECcCHHHHHHHHHHHHHHHHHhCC----CCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCC
Confidence            99999999999999998 6889999888754    7999999999999752             2337788899999999


Q ss_pred             CCcEEeeeccC-C-HHHHHHHHHHHHhCCCC
Q 006490          565 EPPIPVSMKSK-D-LNNVFSRIIWAAEHPHL  593 (643)
Q Consensus       565 ~~~~~vSa~~g-~-i~~l~~~l~~~~~~~~~  593 (643)
                      .++++|||++| | ++++|+.|.+.+.....
T Consensus       176 ~~~~e~SA~~g~g~v~~lf~~l~~~~~~~~~  206 (214)
T 3q3j_B          176 EIYLEGSAFTSEKSIHSIFRTASMLCLNKPS  206 (214)
T ss_dssp             SEEEECCTTTCHHHHHHHHHHHHHHHHC---
T ss_pred             CEEEEeccCCCcccHHHHHHHHHHHHhccCc
Confidence            55999999999 9 99999999998865443

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.92  E-value=1.4e-24  Score=206.51  Aligned_cols=167  Identities=23%  Similarity=0.339  Sum_probs=135.6

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEE
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il   87 (643)
                      ....+||+|+|++|||||||+++|++..+...+.++.+... ....+....+.+.+|||||++.+...+..+++.+|++|
T Consensus        15 ~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   94 (194)
T 2atx_A           15 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFL   94 (194)
T ss_dssp             EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEE
Confidence            34568999999999999999999999988766555443322 33344455688999999999999989999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCC-----------ccchhhhhhhHHHHhhcccceEEEe
Q 006490           88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH-----------NATSLEEVMGPIMQQFREIETCVEC  156 (643)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~  156 (643)
                      +|||++++.+++.+...|+..+....+++|+++|+||+|+....           .. ...+....+++.++. .++++|
T Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~-~~~~~~  172 (194)
T 2atx_A           95 ICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKP-ICVEQGQKLAKEIGA-CCYVEC  172 (194)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCC-CCHHHHHHHHHHHTC-SCEEEC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcc-cCHHHHHHHHHHcCC-cEEEEe
Confidence            99999999999998766999998877789999999999997642           11 123445666777653 369999


Q ss_pred             CcccCCChhHHHHHHHHHHhC
Q 006490          157 SATTMIQVPDVFYYAQKAVLH  177 (643)
Q Consensus       157 Sa~~~~gi~~l~~~i~~~~~~  177 (643)
                      ||++|.||+++|+++.+.++.
T Consensus       173 Sa~~g~gi~~l~~~l~~~i~~  193 (194)
T 2atx_A          173 SALTQKGLKTVFDEAIIAILT  193 (194)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHC
T ss_pred             eCCCCCCHHHHHHHHHHHHhc
Confidence            999999999999999988764

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.92  E-value=1.3e-24  Score=208.07  Aligned_cols=167  Identities=20%  Similarity=0.334  Sum_probs=135.3

Q ss_pred             cccCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhcc
Q 006490          418 QTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALAS  497 (643)
Q Consensus       418 ~~~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~  497 (643)
                      ......+||+|+|.+|||||||+|+|++..+...+.+|.+.++....+...+....+.+||++|++.+..+  +..+++.
T Consensus        24 ~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~  101 (201)
T 2hup_A           24 EQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTI--TQSYYRS  101 (201)
T ss_dssp             --CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHH--HHHHHTT
T ss_pred             cccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHH--HHHHHhh
Confidence            33456799999999999999999999999887777778777777777777755678889999999988877  7888999


Q ss_pred             CCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-
Q 006490          498 CDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-  575 (643)
Q Consensus       498 ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-  575 (643)
                      +|++|+|||++++.+|+.+..|+..+......   ++|+++|+||+|+...+.. .+++.++++.+++.++++|||++| 
T Consensus       102 ~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~---~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~  178 (201)
T 2hup_A          102 ANGAILAYDITKRSSFLSVPHWIEDVRKYAGS---NIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSS  178 (201)
T ss_dssp             CSEEEEEEETTBHHHHHTHHHHHHHHHHHSCT---TCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTB
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC---CCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCC
Confidence            99999999999999999999999998876532   7999999999999764433 667888999999845999999999 


Q ss_pred             CHHHHHHHHHHHHh
Q 006490          576 DLNNVFSRIIWAAE  589 (643)
Q Consensus       576 ~i~~l~~~l~~~~~  589 (643)
                      |++++|++|.+.+.
T Consensus       179 gi~~l~~~l~~~i~  192 (201)
T 2hup_A          179 NVEEAFLRVATELI  192 (201)
T ss_dssp             SHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence            99999999999875

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.92  E-value=1.9e-24  Score=205.92  Aligned_cols=167  Identities=16%  Similarity=0.246  Sum_probs=135.9

Q ss_pred             cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhh-hhccHHhhccC
Q 006490          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK-ILSNKEALASC  498 (643)
Q Consensus       420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~-~~~~~~~~~~a  498 (643)
                      ....+||+|+|++|||||||+|+|++......+.+++..+.....+.+.+....+.+||++|++.+.. +  ...+++.+
T Consensus        20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~--~~~~~~~~   97 (195)
T 3cbq_A           20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWL--RDHCLQTG   97 (195)
T ss_dssp             --CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHH--HHHHHHHC
T ss_pred             CCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhh--HHHhhccC
Confidence            45679999999999999999999987655444446555556566667776667888999999987654 4  56678999


Q ss_pred             CEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-C
Q 006490          499 DVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-D  576 (643)
Q Consensus       499 d~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~  576 (643)
                      |++++|||++++.+|+.+..|+..+.......  ++|+++|+||+|+...+.. .+....+++.+++. ++++||++| |
T Consensus        98 d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~--~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~-~~e~Sa~~~~~  174 (195)
T 3cbq_A           98 DAFLIVFSVTDRRSFSKVPETLLRLRAGRPHH--DLPVILVGNKSDLARSREVSLEEGRHLAGTLSCK-HIETSAALHHN  174 (195)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHSTTS--CCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCE-EEEEBTTTTBS
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEeechhccccCCcCHHHHHHHHHHhCCE-EEEEcCCCCCC
Confidence            99999999999999999999999887765333  7999999999999765443 56778889988875 999999999 9


Q ss_pred             HHHHHHHHHHHHhCC
Q 006490          577 LNNVFSRIIWAAEHP  591 (643)
Q Consensus       577 i~~l~~~l~~~~~~~  591 (643)
                      ++++|+.|++.+...
T Consensus       175 v~~lf~~l~~~i~~~  189 (195)
T 3cbq_A          175 TRELFEGAVRQIRLR  189 (195)
T ss_dssp             HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999988643

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.92  E-value=9.1e-25  Score=207.96  Aligned_cols=170  Identities=21%  Similarity=0.336  Sum_probs=138.2

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEE
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il   87 (643)
                      .+..+||+|+|++|||||||+|+|++..+...+.++.+... ....+....+.+.+|||||++.+...+..+++.+|++|
T Consensus        20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   99 (194)
T 3reg_A           20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVL   99 (194)
T ss_dssp             -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEE
Confidence            45679999999999999999999999988766555443332 33445556778899999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHH
Q 006490           88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV  167 (643)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  167 (643)
                      +|||++++.+++.+...|...++...+++|+++|+||+|+..........+....++..++. ..++++||++|.||+++
T Consensus       100 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l  178 (194)
T 3reg_A          100 LCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGC-VAYIEASSVAKIGLNEV  178 (194)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTC-SCEEECBTTTTBSHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCC-CEEEEeecCCCCCHHHH
Confidence            99999999999998667999998877889999999999997642211234556777777763 24999999999999999


Q ss_pred             HHHHHHHHhCCC
Q 006490          168 FYYAQKAVLHPT  179 (643)
Q Consensus       168 ~~~i~~~~~~~~  179 (643)
                      |+++.+.+....
T Consensus       179 ~~~l~~~i~~~~  190 (194)
T 3reg_A          179 FEKSVDCIFSNK  190 (194)
T ss_dssp             HHHHHHHHHCSC
T ss_pred             HHHHHHHHHhcC
Confidence            999999886543

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.92  E-value=3.2e-24  Score=201.34  Aligned_cols=163  Identities=24%  Similarity=0.373  Sum_probs=140.5

Q ss_pred             cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCC
Q 006490          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (643)
Q Consensus       420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad  499 (643)
                      ....+||+|+|++|||||||+|+|++..+...+.++++.++....+...+....+.+||++|++.+..+  +..+++.+|
T Consensus         6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d   83 (181)
T 3tw8_B            6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTI--TSTYYRGTH   83 (181)
T ss_dssp             CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSC--CGGGGTTCS
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhh--HHHHhccCC
Confidence            346799999999999999999999999988777788887787788888866678889999999888776  778899999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CH
Q 006490          500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DL  577 (643)
Q Consensus       500 ~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i  577 (643)
                      ++++|+|++++.+++.+..|+..+.....    +.|+++|+||+|+...+.. .+....++...+++ ++++||++| |+
T Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi  158 (181)
T 3tw8_B           84 GVIVVYDVTSAESFVNVKRWLHEINQNCD----DVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQ-LFETSAKENVNV  158 (181)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHCT----TSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCC-EEECBTTTTBSH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhCC----CCCEEEEEECCCCchhcccCHHHHHHHHHHcCCe-EEEEECCCCCCH
Confidence            99999999999999999999999887654    7999999999998765443 57788889999986 999999999 99


Q ss_pred             HHHHHHHHHHHh
Q 006490          578 NNVFSRIIWAAE  589 (643)
Q Consensus       578 ~~l~~~l~~~~~  589 (643)
                      +++|++|.+.+.
T Consensus       159 ~~l~~~l~~~~~  170 (181)
T 3tw8_B          159 EEMFNCITELVL  170 (181)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999999875

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.92  E-value=1.9e-24  Score=203.22  Aligned_cols=167  Identities=19%  Similarity=0.283  Sum_probs=139.9

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i  501 (643)
                      ..+||+|+|++|||||||+|+|+++.+...+.+|++..+ ...+...+....+.+||++|++.+..+  ...+++.+|++
T Consensus         5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~~~~   81 (181)
T 3t5g_A            5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIF--PQTYSIDINGY   81 (181)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCC--CGGGTTTCSEE
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHH--HHHHHhcCCEE
Confidence            468999999999999999999999888888878887766 556666756667889999999888766  67888999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHH
Q 006490          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNN  579 (643)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~  579 (643)
                      ++|||++++.+++.+..|+..+.......  ++|+++|+||+|+...+.. .+....+++.++++ ++++||++| |+++
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~  158 (181)
T 3t5g_A           82 ILVYSVTSIKSFEVIKVIHGKLLDMVGKV--QIPIMLVGNKKDLHMERVISYEEGKALAESWNAA-FLESSAKENQTAVD  158 (181)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHC------CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCE-EEECCTTSHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEECccchhcceecHHHHHHHHHHhCCc-EEEEecCCCCCHHH
Confidence            99999999999999999999887765443  7999999999999765444 77888999999986 999999999 9999


Q ss_pred             HHHHHHHHHhCCCCC
Q 006490          580 VFSRIIWAAEHPHLN  594 (643)
Q Consensus       580 l~~~l~~~~~~~~~~  594 (643)
                      +|+.|.+.+......
T Consensus       159 l~~~l~~~~~~~~~~  173 (181)
T 3t5g_A          159 VFRRIILEAEKMDGA  173 (181)
T ss_dssp             HHHHHHHHHHTC---
T ss_pred             HHHHHHHHHHHhcCC
Confidence            999999998765543

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.92  E-value=3e-24  Score=199.34  Aligned_cols=162  Identities=26%  Similarity=0.424  Sum_probs=136.5

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i  501 (643)
                      ..+||+|+|++|||||||+|+|++..+...+.+|++.++....+..++....+.+||++|++.+..+  +..+++.+|++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~--~~~~~~~~d~~   79 (170)
T 1g16_A            2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTI--TTAYYRGAMGI   79 (170)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCC--CHHHHTTEEEE
T ss_pred             CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhh--HHHHhccCCEE
Confidence            3589999999999999999999999887777788887788888888866778899999999888776  78889999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC-CHHHH
Q 006490          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNV  580 (643)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l  580 (643)
                      ++|+|++++.+++.+..|+..+......   +.|+++|+||+|+.......+....+++.++++ ++++||++| |++++
T Consensus        80 i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gv~~l  155 (170)
T 1g16_A           80 ILVYDITDERTFTNIKQWFKTVNEHAND---EAQLLLVGNKSDMETRVVTADQGEALAKELGIP-FIESSAKNDDNVNEI  155 (170)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCT---TCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCC-EEECBTTTTBSHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCC---CCcEEEEEECccCCcCccCHHHHHHHHHHcCCe-EEEEECCCCCCHHHH
Confidence            9999999999999999999888776532   789999999999965444567788899999986 999999999 99999


Q ss_pred             HHHHHHHHh
Q 006490          581 FSRIIWAAE  589 (643)
Q Consensus       581 ~~~l~~~~~  589 (643)
                      |++|.+.+.
T Consensus       156 ~~~l~~~~~  164 (170)
T 1g16_A          156 FFTLAKLIQ  164 (170)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999875

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.92  E-value=5e-24  Score=199.96  Aligned_cols=167  Identities=19%  Similarity=0.359  Sum_probs=134.3

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCC
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSE-NYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~-~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad  499 (643)
                      ...+||+|+|++|||||||+|+|++..+.. .+.+|++.++....+...+....+.+||++|++.+..+  +..+++.+|
T Consensus         8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~--~~~~~~~~d   85 (180)
T 2g6b_A            8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSV--THAYYRDAH   85 (180)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC----------CCGGGCS
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHH--HHHHccCCC
Confidence            457999999999999999999999998864 44577777777777777766678889999999888776  677889999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CH
Q 006490          500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DL  577 (643)
Q Consensus       500 ~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i  577 (643)
                      ++++|+|++++.+++.+..|+..+......   +.|+++|+||+|+...+.. .+....+++.+++. ++++||++| |+
T Consensus        86 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi  161 (180)
T 2g6b_A           86 ALLLLYDVTNKASFDNIQAWLTEIHEYAQH---DVALMLLGNKVDSAHERVVKREDGEKLAKEYGLP-FMETSAKTGLNV  161 (180)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCT---TCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCC-EEECCTTTCTTH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhCCC---CCcEEEEEECcccCcccccCHHHHHHHHHHcCCe-EEEEeCCCCCCH
Confidence            999999999999999999999988876532   7999999999999865443 56778888889986 999999999 99


Q ss_pred             HHHHHHHHHHHhCCCC
Q 006490          578 NNVFSRIIWAAEHPHL  593 (643)
Q Consensus       578 ~~l~~~l~~~~~~~~~  593 (643)
                      +++|++|.+.+.....
T Consensus       162 ~~l~~~l~~~~~~~~~  177 (180)
T 2g6b_A          162 DLAFTAIAKELKRRSM  177 (180)
T ss_dssp             HHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            9999999998875443

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.92  E-value=1.7e-24  Score=204.20  Aligned_cols=163  Identities=17%  Similarity=0.202  Sum_probs=129.9

Q ss_pred             CCCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEE
Q 006490            7 SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV   86 (643)
Q Consensus         7 ~~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i   86 (643)
                      ...++.+||+|+|++|||||||+++|+++.+...+.++.+.......+....+.+.+|||+|++.+.     +++.+|++
T Consensus        15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~   89 (184)
T 3ihw_A           15 YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAV   89 (184)
T ss_dssp             -CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEE
T ss_pred             CCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEE
Confidence            3467789999999999999999999999998776555544444444555667889999999988764     78899999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHhcC--CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCCh
Q 006490           87 VLTYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQV  164 (643)
Q Consensus        87 l~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  164 (643)
                      ++|||++++.+++.+.. |+..+....  .++|++||+||+|+..........+....++..++. ..+++|||++|.||
T Consensus        90 i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~-~~~~e~Sa~~~~gv  167 (184)
T 3ihw_A           90 VFVFSLEDEISFQTVYN-YFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKR-CTYYETCATYGLNV  167 (184)
T ss_dssp             EEEEETTCHHHHHHHHH-HHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTT-CEEEEEBTTTTBTH
T ss_pred             EEEEECcCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCC-CeEEEecCCCCCCH
Confidence            99999999999999884 999987753  579999999999995322111234556777777763 37999999999999


Q ss_pred             hHHHHHHHHHHh
Q 006490          165 PDVFYYAQKAVL  176 (643)
Q Consensus       165 ~~l~~~i~~~~~  176 (643)
                      +++|+++.+.+.
T Consensus       168 ~~lf~~l~~~i~  179 (184)
T 3ihw_A          168 ERVFQDVAQKVV  179 (184)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988764

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.92  E-value=3.3e-24  Score=205.20  Aligned_cols=164  Identities=21%  Similarity=0.309  Sum_probs=141.9

Q ss_pred             cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCC
Q 006490          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (643)
Q Consensus       420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad  499 (643)
                      ....+||+|+|++|||||||+|+|++..+...+.+|.+.++....+..+|....+.+||++|++.+..+  +..+++.+|
T Consensus        23 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~--~~~~~~~~d  100 (201)
T 2ew1_A           23 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSI--TQSYYRSAN  100 (201)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHH--HGGGSTTCS
T ss_pred             cccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHH--HHHHHhcCC
Confidence            345799999999999999999999999888777788887787778888866678889999999988877  678899999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CH
Q 006490          500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DL  577 (643)
Q Consensus       500 ~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i  577 (643)
                      ++++|||++++.+|+.+..|+..+......   +.|+++|+||+|+...+.. .+..+.+++..++. +++|||++| |+
T Consensus       101 ~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~---~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~g~gv  176 (201)
T 2ew1_A          101 ALILTYDITCEESFRCLPEWLREIEQYASN---KVITVLVGNKIDLAERREVSQQRAEEFSEAQDMY-YLETSAKESDNV  176 (201)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCT---TCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCC-EEECCTTTCTTH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCC---CCCEEEEEECCCCccccccCHHHHHHHHHHcCCE-EEEEeCCCCCCH
Confidence            999999999999999999999988776532   7899999999999764443 66778888888886 999999999 99


Q ss_pred             HHHHHHHHHHHh
Q 006490          578 NNVFSRIIWAAE  589 (643)
Q Consensus       578 ~~l~~~l~~~~~  589 (643)
                      +++|++|.+.+.
T Consensus       177 ~~l~~~l~~~i~  188 (201)
T 2ew1_A          177 EKLFLDLACRLI  188 (201)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998774

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.92  E-value=7e-24  Score=201.93  Aligned_cols=164  Identities=25%  Similarity=0.411  Sum_probs=144.5

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (643)
                      ...+||+|+|.+|||||||+|+|++..+...+.++++.++....+...+....+.+||++|++.+..+  +..+++.+|+
T Consensus        14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d~   91 (196)
T 3tkl_A           14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI--TSSYYRGAHG   91 (196)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTT--HHHHHTTCSE
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhh--HHHHHhhCCE
Confidence            45799999999999999999999999988888888887788888888866678889999999888777  7788999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHH
Q 006490          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLN  578 (643)
Q Consensus       501 illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~  578 (643)
                      +++|||++++.+++.+..|+..+......   +.|+++|+||+|+...+.. .+..+.+++.++++ ++++||++| |++
T Consensus        92 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~g~gv~  167 (196)
T 3tkl_A           92 IIVVYDVTDQESFNNVKQWLQEIDRYASE---NVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIP-FLETSAKNATNVE  167 (196)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCT---TCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCC-EEEECTTTCTTHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCC---CCCEEEEEECcccccccccCHHHHHHHHHHcCCc-EEEEeCCCCCCHH
Confidence            99999999999999999999988776543   7899999999999865544 56788899999986 999999999 999


Q ss_pred             HHHHHHHHHHhC
Q 006490          579 NVFSRIIWAAEH  590 (643)
Q Consensus       579 ~l~~~l~~~~~~  590 (643)
                      ++|++|.+.+..
T Consensus       168 ~l~~~l~~~i~~  179 (196)
T 3tkl_A          168 QSFMTMAAEIKK  179 (196)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998764

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.92  E-value=5.9e-24  Score=200.14  Aligned_cols=164  Identities=19%  Similarity=0.344  Sum_probs=140.3

Q ss_pred             cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCC
Q 006490          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (643)
Q Consensus       420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad  499 (643)
                      ....+||+|+|++|||||||+|+|++..+...+.+|++..+ ...+...+....+.+||++|++.+..+  ...+++.+|
T Consensus        15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~d   91 (183)
T 3kkq_A           15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAM--REQYMRTGD   91 (183)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSS--HHHHHHHCS
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHH--HHHHHhcCC
Confidence            34579999999999999999999999988888878877766 566666656666778999999888777  678899999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeec-cC-C
Q 006490          500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMK-SK-D  576 (643)
Q Consensus       500 ~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~-~g-~  576 (643)
                      ++++|||++++.+|+.+..|+..+.......  ++|+++|+||+|+.+.+.. .+....+++.++++ ++++||+ +| |
T Consensus        92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~~~  168 (183)
T 3kkq_A           92 GFLIVYSVTDKASFEHVDRFHQLILRVKDRE--SFPMILVANKVDLMHLRKVTRDQGKEMATKYNIP-YIETSAKDPPLN  168 (183)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHTSS--CCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCC-EEEEBCSSSCBS
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCcEEEEEECCCchhccCcCHHHHHHHHHHhCCe-EEEeccCCCCCC
Confidence            9999999999999999999999887654433  7999999999999764443 67788999999976 9999999 99 9


Q ss_pred             HHHHHHHHHHHHh
Q 006490          577 LNNVFSRIIWAAE  589 (643)
Q Consensus       577 i~~l~~~l~~~~~  589 (643)
                      ++++|+.|.+.+.
T Consensus       169 v~~l~~~l~~~i~  181 (183)
T 3kkq_A          169 VDKTFHDLVRVIR  181 (183)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998764

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.92  E-value=1.1e-24  Score=210.94  Aligned_cols=170  Identities=24%  Similarity=0.288  Sum_probs=135.3

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe-eeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEE
Q 006490            8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV   86 (643)
Q Consensus         8 ~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i   86 (643)
                      ..+..+||+|+|++|||||||+++|+++.+...+.++.+.. .....+....+.+.||||+|++.+...+..+++.+|++
T Consensus        23 ~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~  102 (214)
T 3q3j_B           23 PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAV  102 (214)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             CccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEE
Confidence            45667999999999999999999999999877755544333 23345556678999999999999999999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCC------------CccchhhhhhhHHHHhhcccceEE
Q 006490           87 VLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD------------HNATSLEEVMGPIMQQFREIETCV  154 (643)
Q Consensus        87 l~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~  154 (643)
                      |+|||++++.+++.+...|+..++..++++|++||+||+|+..+            +.+  ..+....++..++. .+++
T Consensus       103 i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~-~~~~  179 (214)
T 3q3j_B          103 LLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPI--SYEQGCAIAKQLGA-EIYL  179 (214)
T ss_dssp             EEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCC--CHHHHHHHHHHHTC-SEEE
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCcc--CHHHHHHHHHHcCC-CEEE
Confidence            99999999999999544799999888889999999999999753            222  34456777777762 3799


Q ss_pred             EeCcccCCC-hhHHHHHHHHHHhCCCC
Q 006490          155 ECSATTMIQ-VPDVFYYAQKAVLHPTA  180 (643)
Q Consensus       155 ~~Sa~~~~g-i~~l~~~i~~~~~~~~~  180 (643)
                      +|||++|.| |+++|+.+.+.+.....
T Consensus       180 e~SA~~g~g~v~~lf~~l~~~~~~~~~  206 (214)
T 3q3j_B          180 EGSAFTSEKSIHSIFRTASMLCLNKPS  206 (214)
T ss_dssp             ECCTTTCHHHHHHHHHHHHHHHHC---
T ss_pred             EeccCCCcccHHHHHHHHHHHHhccCc
Confidence            999999998 99999999998875543

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.92  E-value=5.2e-24  Score=202.67  Aligned_cols=166  Identities=19%  Similarity=0.284  Sum_probs=140.6

Q ss_pred             cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCC
Q 006490          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (643)
Q Consensus       420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad  499 (643)
                      ....+||+++|.+|||||||+|+|++..+...+.+|++..+.. .+...+....+.+||++|++.+..+  +..+++.+|
T Consensus        20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d   96 (194)
T 3reg_A           20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH-VMKYKNEEFILHLWDTAGQEEYDRL--RPLSYADSD   96 (194)
T ss_dssp             -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEE-EEEETTEEEEEEEEEECCSGGGTTT--GGGGCTTCS
T ss_pred             cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEE-EEEECCEEEEEEEEECCCcHHHHHH--hHhhccCCc
Confidence            4567999999999999999999999999877777887776554 4556656667889999999988877  778899999


Q ss_pred             EEEEEEeCCChhhHHHH-HHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCc---cccHHHHHHHHHHhCCCCcEEeeeccC
Q 006490          500 VTIFVYDSSDEYSWKRT-KELLVEVARLGEDSGYGVPCLLIASKDDLKPY---TMAVQDSARVTQELGIEPPIPVSMKSK  575 (643)
Q Consensus       500 ~illv~D~s~~~s~~~~-~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~vSa~~g  575 (643)
                      ++++|||++++.+|+.+ ..|+..+.....    +.|+++|+||+|+...   ....+...++++.+++.+++++||++|
T Consensus        97 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  172 (194)
T 3reg_A           97 VVLLCFAVNNRTSFDNISTKWEPEIKHYID----TAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAK  172 (194)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHHCT----TSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTT
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhCC----CCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCC
Confidence            99999999999999987 678888876644    7999999999999753   233778889999999887999999999


Q ss_pred             -CHHHHHHHHHHHHhCCC
Q 006490          576 -DLNNVFSRIIWAAEHPH  592 (643)
Q Consensus       576 -~i~~l~~~l~~~~~~~~  592 (643)
                       |++++|++|.+.+....
T Consensus       173 ~gi~~l~~~l~~~i~~~~  190 (194)
T 3reg_A          173 IGLNEVFEKSVDCIFSNK  190 (194)
T ss_dssp             BSHHHHHHHHHHHHHCSC
T ss_pred             CCHHHHHHHHHHHHHhcC
Confidence             99999999999886443

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.92  E-value=5.5e-24  Score=202.00  Aligned_cols=164  Identities=19%  Similarity=0.313  Sum_probs=138.4

Q ss_pred             cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCC
Q 006490          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (643)
Q Consensus       420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad  499 (643)
                      ....+||+|+|++|||||||+|+|++..+...+.+|++.++....+..++....+.+||++|++.+..+  +..+++.+|
T Consensus        18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d   95 (191)
T 2a5j_A           18 GSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSI--TRSYYRGAA   95 (191)
T ss_dssp             TCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCC--CHHHHTTCS
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhh--HHHHhccCC
Confidence            345699999999999999999999999988888788887787777888766678889999999888777  788999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CH
Q 006490          500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DL  577 (643)
Q Consensus       500 ~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i  577 (643)
                      ++++|+|++++.+++.+..|+..+......   +.|+++|+||+|+...+.. .+..+.+++..++. ++++||++| |+
T Consensus        96 ~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~---~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~gi  171 (191)
T 2a5j_A           96 GALLVYDITRRETFNHLTSWLEDARQHSSS---NMVIMLIGNKSDLESRRDVKREEGEAFAREHGLI-FMETSAKTACNV  171 (191)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCT---TCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEEECTTTCTTH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCC---CCCEEEEEECcccCCccccCHHHHHHHHHHcCCE-EEEEeCCCCCCH
Confidence            999999999999999999999988776432   7999999999999764433 66788889999986 999999999 99


Q ss_pred             HHHHHHHHHHHh
Q 006490          578 NNVFSRIIWAAE  589 (643)
Q Consensus       578 ~~l~~~l~~~~~  589 (643)
                      +++|++|.+.+.
T Consensus       172 ~~l~~~l~~~i~  183 (191)
T 2a5j_A          172 EEAFINTAKEIY  183 (191)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998764

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.92  E-value=4.4e-24  Score=198.25  Aligned_cols=163  Identities=18%  Similarity=0.307  Sum_probs=135.1

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (643)
                      ...+||+|+|++|||||||+|+|++..+...+.+|.+.++....+...+....+.+||++|++.+..+  ...+++.+|+
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~d~   81 (170)
T 1z08_A            4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHAL--GPIYYRDSNG   81 (170)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC---------CCSSTTCSE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhh--HHHHhccCCE
Confidence            35689999999999999999999999887777788887777777888866778889999999888776  6678899999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHH
Q 006490          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLN  578 (643)
Q Consensus       501 illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~  578 (643)
                      +++|+|++++.+++.+..|+..+......   +.|+++|+||+|+.+.+.. .+....+++..++. ++++||++| |++
T Consensus        82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~  157 (170)
T 1z08_A           82 AILVYDITDEDSFQKVKNWVKELRKMLGN---EICLCIVGNKIDLEKERHVSIQEAESYAESVGAK-HYHTSAKQNKGIE  157 (170)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHGG---GSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEEEBTTTTBSHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCC---CCeEEEEEECcccccccccCHHHHHHHHHHcCCe-EEEecCCCCCCHH
Confidence            99999999999999999999888765432   7899999999999765433 56788889998876 999999999 999


Q ss_pred             HHHHHHHHHHh
Q 006490          579 NVFSRIIWAAE  589 (643)
Q Consensus       579 ~l~~~l~~~~~  589 (643)
                      ++|++|.+.+.
T Consensus       158 ~l~~~l~~~~~  168 (170)
T 1z08_A          158 ELFLDLCKRMI  168 (170)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999998775

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.92  E-value=3.8e-24  Score=198.55  Aligned_cols=163  Identities=17%  Similarity=0.242  Sum_probs=125.0

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEE
Q 006490          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~il  502 (643)
                      .+||+++|++|||||||+|+|++......+.++.+.+.....+...+....+.+||++|++.+.... ...+++.+|+++
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~-~~~~~~~~d~~i   80 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWL-QDHCLQTGDAFL   80 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC---------CHHHHHCSEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhh-hhhhhccCCEEE
Confidence            5899999999999999999999888777666655566666777777667788899999998776521 456688999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHHH
Q 006490          503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNNV  580 (643)
Q Consensus       503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l  580 (643)
                      +|||++++.+++.+..|+..+.......  ++|+++|+||+|+.+.+.. .+....+++.++++ ++++||++| |++++
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~l  157 (169)
T 3q85_A           81 IVFSVTDRRSFSKVPETLLRLRAGRPHH--DLPVILVGNKSDLARSREVSLEEGRHLAGTLSCK-HIETSAALHHNTREL  157 (169)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSTTS--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCE-EEECBTTTTBSHHHH
T ss_pred             EEEECCChHHHHHHHHHHHHHHhcccCC--CCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCc-EEEecCccCCCHHHH
Confidence            9999999999999999999988766543  7999999999999754433 67788899999986 999999999 99999


Q ss_pred             HHHHHHHHh
Q 006490          581 FSRIIWAAE  589 (643)
Q Consensus       581 ~~~l~~~~~  589 (643)
                      |+++.+.+.
T Consensus       158 ~~~l~~~i~  166 (169)
T 3q85_A          158 FEGAVRQIR  166 (169)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999775

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.92  E-value=9e-24  Score=198.39  Aligned_cols=163  Identities=21%  Similarity=0.285  Sum_probs=141.9

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (643)
                      ...+||+|+|.+|||||||+|+|++..+...+.+|.+.++....+...+....+.+||++|++.+..+  +..+++.+|+
T Consensus        10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d~   87 (181)
T 2efe_B           10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL--APMYYRGAAA   87 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGG--THHHHTTCSE
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhh--hHHHhccCCE
Confidence            45689999999999999999999999988877788887777777777766778889999999888777  7888999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHH
Q 006490          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLN  578 (643)
Q Consensus       501 illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~  578 (643)
                      +++|+|++++.+++.+..|+..+......   +.|+++|+||+|+...+.. .+....+++..++. ++++||++| |++
T Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~g~gi~  163 (181)
T 2efe_B           88 AIIVFDVTNQASFERAKKWVQELQAQGNP---NMVMALAGNKSDLLDARKVTAEDAQTYAQENGLF-FMETSAKTATNVK  163 (181)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCT---TCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCE-EEECCSSSCTTHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCC---CCcEEEEEECCcccccccCCHHHHHHHHHHcCCE-EEEEECCCCCCHH
Confidence            99999999999999999999988876532   7899999999999765443 66788888888886 999999999 999


Q ss_pred             HHHHHHHHHHh
Q 006490          579 NVFSRIIWAAE  589 (643)
Q Consensus       579 ~l~~~l~~~~~  589 (643)
                      ++|++|.+.+.
T Consensus       164 ~l~~~l~~~~~  174 (181)
T 2efe_B          164 EIFYEIARRLP  174 (181)
T ss_dssp             HHHHHHHHTCC
T ss_pred             HHHHHHHHHHH
Confidence            99999998765

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.92  E-value=1.3e-24  Score=204.39  Aligned_cols=168  Identities=23%  Similarity=0.356  Sum_probs=124.0

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe-eeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEE
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il   87 (643)
                      .+..+||+|+|++|||||||+++|++..+...+.++.+.. .....+....+.+.+|||||++.+...+..+++.+|+++
T Consensus         5 ~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   84 (182)
T 3bwd_D            5 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI   84 (182)
T ss_dssp             --CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence            4567999999999999999999999988766654433322 233344555677889999999999889999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCcc--------chhhhhhhHHHHhhcccceEEEeCcc
Q 006490           88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA--------TSLEEVMGPIMQQFREIETCVECSAT  159 (643)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~Sa~  159 (643)
                      +|||++++.+++.+...|...++...+++|+++|+||+|+......        ....+....+.+.++. .++++|||+
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~Sa~  163 (182)
T 3bwd_D           85 LAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGA-PAYIECSSK  163 (182)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTC-SEEEECCTT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCC-CEEEEEECC
Confidence            9999999999999876799999887778999999999998654321        0023345666666653 379999999


Q ss_pred             cCCChhHHHHHHHHHHhC
Q 006490          160 TMIQVPDVFYYAQKAVLH  177 (643)
Q Consensus       160 ~~~gi~~l~~~i~~~~~~  177 (643)
                      +|.|++++|+++.+.+..
T Consensus       164 ~~~gi~~l~~~l~~~i~~  181 (182)
T 3bwd_D          164 SQENVKGVFDAAIRVVLQ  181 (182)
T ss_dssp             TCTTHHHHHHHHHHHHSC
T ss_pred             CCCCHHHHHHHHHHHHhc
Confidence            999999999999988764

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.92  E-value=8.2e-24  Score=198.13  Aligned_cols=163  Identities=19%  Similarity=0.354  Sum_probs=141.4

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (643)
                      ...+||+|+|.+|||||||+|+|++..+...+.+|++.++....+...+....+.+||++|++.+..+  +..+++.+|+
T Consensus        13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~d~   90 (179)
T 1z0f_A           13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAV--TRSYYRGAAG   90 (179)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHH--HHHHHHTCSE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhh--HHHHhccCCE
Confidence            45799999999999999999999999988777788887777777777766678889999999888776  7788999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHH
Q 006490          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLN  578 (643)
Q Consensus       501 illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~  578 (643)
                      +++|+|++++.+++.+..|+..+......   +.|+++|+||+|+...+.. .+...++++.+++. ++++||++| |++
T Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~  166 (179)
T 1z0f_A           91 ALMVYDITRRSTYNHLSSWLTDARNLTNP---NTVIILIGNKADLEAQRDVTYEEAKQFAEENGLL-FLEASAKTGENVE  166 (179)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCT---TCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCE-EEECCTTTCTTHH
T ss_pred             EEEEEeCcCHHHHHHHHHHHHHHHHhcCC---CCcEEEEEECcccccccccCHHHHHHHHHHcCCE-EEEEeCCCCCCHH
Confidence            99999999999999999999888776532   7999999999999764433 56788888888886 999999999 999


Q ss_pred             HHHHHHHHHHh
Q 006490          579 NVFSRIIWAAE  589 (643)
Q Consensus       579 ~l~~~l~~~~~  589 (643)
                      ++|++|.+.+.
T Consensus       167 ~l~~~l~~~i~  177 (179)
T 1z0f_A          167 DAFLEAAKKIY  177 (179)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHHh
Confidence            99999998764

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.92  E-value=2e-24  Score=206.85  Aligned_cols=171  Identities=17%  Similarity=0.291  Sum_probs=137.1

Q ss_pred             hccccCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhh
Q 006490          416 KQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEAL  495 (643)
Q Consensus       416 ~~~~~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~  495 (643)
                      ++......+||+|+|.+|||||||+|+|++..+...+.+|++..+ ...+...+....+.+||++|++.+..+  +..++
T Consensus        17 q~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~   93 (201)
T 3oes_A           17 QGMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSIL--PYSFI   93 (201)
T ss_dssp             ------CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCC--CGGGT
T ss_pred             CCCCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHH--HHHHH
Confidence            334456689999999999999999999999999888878877766 555666656778889999999888777  77889


Q ss_pred             ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeecc
Q 006490          496 ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKS  574 (643)
Q Consensus       496 ~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~  574 (643)
                      +.+|++++|||++++.+++.+..|+..+.......  ++|+++|+||+|+...+.. ......+++.++++ ++++||++
T Consensus        94 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~  170 (201)
T 3oes_A           94 IGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKT--RVPVVLVGNKADLSPEREVQAVEGKKLAESWGAT-FMESSARE  170 (201)
T ss_dssp             TTCCEEEEEEETTCHHHHHHHHHHHHHHHC-------CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEECCTTC
T ss_pred             hcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEECccCccccccCHHHHHHHHHHhCCe-EEEEeCCC
Confidence            99999999999999999999999999887664433  7899999999999765444 57788899999986 99999999


Q ss_pred             C-CHHHHHHHHHHHHhCCC
Q 006490          575 K-DLNNVFSRIIWAAEHPH  592 (643)
Q Consensus       575 g-~i~~l~~~l~~~~~~~~  592 (643)
                      | |++++|+.|.+.+....
T Consensus       171 ~~~v~~l~~~l~~~i~~~~  189 (201)
T 3oes_A          171 NQLTQGIFTKVIQEIARVE  189 (201)
T ss_dssp             HHHHHHHHHHHHHHHHHC-
T ss_pred             CCCHHHHHHHHHHHHHhhh
Confidence            9 99999999999886443

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.92  E-value=6.1e-24  Score=196.81  Aligned_cols=161  Identities=16%  Similarity=0.279  Sum_probs=141.0

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i  501 (643)
                      ..+||+|+|++|||||||+|+|++..+...+.+|++.++....+...+....+.+||++|++.+..+  +..+++.+|++
T Consensus         4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~d~~   81 (168)
T 1z2a_A            4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAI--TKAYYRGAQAC   81 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCC--CHHHHTTCCEE
T ss_pred             eeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHH--HHHHhcCCCEE
Confidence            4689999999999999999999999888777788887787777877766678889999999888777  78889999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHH
Q 006490          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNN  579 (643)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~  579 (643)
                      ++|+|++++.+++.+..|+..+.....    +.|+++|+||+|+...+.. .+..+.+++..+++ ++++||++| |+++
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~  156 (168)
T 1z2a_A           82 VLVFSTTDRESFEAISSWREKVVAEVG----DIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLR-FYRTSVKEDLNVSE  156 (168)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHC----SCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCE-EEECBTTTTBSSHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhCC----CCCEEEEEECcccCcccccCHHHHHHHHHHcCCe-EEEEecCCCCCHHH
Confidence            999999999999999999988877653    7999999999999765433 66778889999986 999999999 9999


Q ss_pred             HHHHHHHHHh
Q 006490          580 VFSRIIWAAE  589 (643)
Q Consensus       580 l~~~l~~~~~  589 (643)
                      ++++|.+.+.
T Consensus       157 l~~~l~~~~~  166 (168)
T 1z2a_A          157 VFKYLAEKHL  166 (168)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999998764

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.92  E-value=5.9e-24  Score=197.20  Aligned_cols=161  Identities=22%  Similarity=0.298  Sum_probs=138.6

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i  501 (643)
                      ..+||+++|++|||||||+|+|+++.+...+.++.+..+....+...+....+.+||++|++.+..+  +..+++.+|++
T Consensus         5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~--~~~~~~~~d~~   82 (170)
T 1r2q_A            5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSL--APMYYRGAQAA   82 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGG--HHHHHTTCSEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhh--hHHhccCCCEE
Confidence            4689999999999999999999999888777778777777777777766778889999999888776  77889999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHH
Q 006490          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNN  579 (643)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~  579 (643)
                      ++|+|++++.+++.+..|+..+......   +.|+++|+||+|+...+.. .+....+++..++. ++++||++| |+++
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~g~gi~~  158 (170)
T 1r2q_A           83 IVVYDITNEESFARAKNWVKELQRQASP---NIVIALSGNKADLANKRAVDFQEAQSYADDNSLL-FMETSAKTSMNVNE  158 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCT---TCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEECCTTTCTTHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCC---CCcEEEEEECccCccccccCHHHHHHHHHHcCCe-EEEEeCCCCCCHHH
Confidence            9999999999999999999888776432   7899999999999764433 56777888888876 999999999 9999


Q ss_pred             HHHHHHHHH
Q 006490          580 VFSRIIWAA  588 (643)
Q Consensus       580 l~~~l~~~~  588 (643)
                      +|++|.+.+
T Consensus       159 l~~~i~~~~  167 (170)
T 1r2q_A          159 IFMAIAKKL  167 (170)
T ss_dssp             HHHHHHHTS
T ss_pred             HHHHHHHHH
Confidence            999998765

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.92  E-value=7.3e-24  Score=200.77  Aligned_cols=164  Identities=21%  Similarity=0.366  Sum_probs=141.1

Q ss_pred             cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCC
Q 006490          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (643)
Q Consensus       420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad  499 (643)
                      ....+||+|+|++|||||||+|+|++..+...+.+|.+.++....+...+....+.+||++|++.+..+  +..+++.+|
T Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~d   96 (189)
T 2gf9_A           19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTI--TTAYYRGAM   96 (189)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCS--GGGGGTTCS
T ss_pred             cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhh--HHHhccCCC
Confidence            345799999999999999999999999988777778777777777777766678889999999888776  678899999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CH
Q 006490          500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DL  577 (643)
Q Consensus       500 ~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i  577 (643)
                      ++++|||++++.+++.+..|+..+......   +.|+++|+||+|+...+.. .+..+++++.+++. ++++||++| |+
T Consensus        97 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~g~gi  172 (189)
T 2gf9_A           97 GFLLMYDIANQESFAAVQDWATQIKTYSWD---NAQVILVGNKCDLEDERVVPAEDGRRLADDLGFE-FFEASAKENINV  172 (189)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCT---TCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEECBTTTTBSH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCC---CCCEEEEEECcccccccCCCHHHHHHHHHHcCCe-EEEEECCCCCCH
Confidence            999999999999999999999988776422   7999999999999765443 56788899999986 999999999 99


Q ss_pred             HHHHHHHHHHHh
Q 006490          578 NNVFSRIIWAAE  589 (643)
Q Consensus       578 ~~l~~~l~~~~~  589 (643)
                      +++|++|.+.+.
T Consensus       173 ~~l~~~l~~~i~  184 (189)
T 2gf9_A          173 KQVFERLVDVIC  184 (189)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998764

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.92  E-value=4.3e-24  Score=197.58  Aligned_cols=161  Identities=24%  Similarity=0.324  Sum_probs=129.9

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (643)
Q Consensus        11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v   89 (643)
                      +.+||+++|++|||||||+|+|+++.+...+.++.+... ....+....+.+.+|||||++.+...+..+++.+|++++|
T Consensus         2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   81 (167)
T 1c1y_A            2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV   81 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence            568999999999999999999999887666544333222 3334556678899999999999989999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHH
Q 006490           90 YACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV  167 (643)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  167 (643)
                      ||++++.+++.+.. |...+...  ..++|+++|+||+|+...+..  ..+....+...++. .+++++||++|.|++++
T Consensus        82 ~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l  157 (167)
T 1c1y_A           82 YSITAQSTFNDLQD-LREQILRVKDTEDVPMILVGNKCDLEDERVV--GKEQGQNLARQWCN-CAFLESSAKSKINVNEI  157 (167)
T ss_dssp             EETTCHHHHHTHHH-HHHHHHHHHCCSCCCEEEEEECTTCGGGCCS--CHHHHHHHHHHTTS-CEEEECBTTTTBSHHHH
T ss_pred             EECCCHHHHHHHHH-HHHHHHHhhCcCCCcEEEEEECccccccccC--CHHHHHHHHHHccC-CcEEEecCCCCCCHHHH
Confidence            99999999998874 77777553  358999999999999765443  23445666666643 37999999999999999


Q ss_pred             HHHHHHHH
Q 006490          168 FYYAQKAV  175 (643)
Q Consensus       168 ~~~i~~~~  175 (643)
                      ++++.+.+
T Consensus       158 ~~~l~~~i  165 (167)
T 1c1y_A          158 FYDLVRQI  165 (167)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998875

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.91  E-value=1.2e-23  Score=195.09  Aligned_cols=162  Identities=21%  Similarity=0.310  Sum_probs=139.7

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i  501 (643)
                      ..+||+++|++|||||||+|+|++..+...+.++.+..+....+...+....+.+||++|.+.+..+  ...+++.+|++
T Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~--~~~~~~~~~~~   82 (170)
T 1z0j_A            5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRAL--APMYYRGSAAA   82 (170)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGG--THHHHTTCSEE
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcc--cHhhCcCCCEE
Confidence            4589999999999999999999999987777788777777777777766678889999999888777  77889999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHH
Q 006490          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNN  579 (643)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~  579 (643)
                      ++|+|++++.+++.+..|+..+......   +.|+++|+||+|+...+.. .+....+++..+++ ++++||++| |+++
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~l~~~~~~---~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~  158 (170)
T 1z0j_A           83 IIVYDITKEETFSTLKNWVRELRQHGPP---SIVVAIAGNKCDLTDVREVMERDAKDYADSIHAI-FVETSAKNAININE  158 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCT---TSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCE-EEECBTTTTBSHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhCCC---CCcEEEEEECCccccccccCHHHHHHHHHHcCCE-EEEEeCCCCcCHHH
Confidence            9999999999999999999888776432   7899999999999765443 66788888888876 999999999 9999


Q ss_pred             HHHHHHHHHh
Q 006490          580 VFSRIIWAAE  589 (643)
Q Consensus       580 l~~~l~~~~~  589 (643)
                      +|++|.+.+.
T Consensus       159 l~~~i~~~i~  168 (170)
T 1z0j_A          159 LFIEISRRIP  168 (170)
T ss_dssp             HHHHHHHHCC
T ss_pred             HHHHHHHHHh
Confidence            9999988763

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.91  E-value=9.7e-24  Score=195.21  Aligned_cols=162  Identities=20%  Similarity=0.332  Sum_probs=136.2

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEE
Q 006490          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~il  502 (643)
                      .+||+++|++|||||||+|+|+++.+...+.+|++..+. ..+...+....+.+||++|++.+..+  +..+++.+|+++
T Consensus         3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~--~~~~~~~~d~~i   79 (167)
T 1c1y_A            3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQFTAM--RDLYMKNGQGFA   79 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEESSSCEEEEEEEEECSSCSSTTH--HHHHHHHCSEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEE-EEEEECCEEEEEEEEECCChHHHHHH--HHHHhccCCEEE
Confidence            589999999999999999999999888777777776553 45666766778889999999888776  678889999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHHH
Q 006490          503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNNV  580 (643)
Q Consensus       503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l  580 (643)
                      +|||++++.+++.+..|+..+.......  +.|+++|+||+|+.+.+.. .+....+++.++..+++++||++| |++++
T Consensus        80 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  157 (167)
T 1c1y_A           80 LVYSITAQSTFNDLQDLREQILRVKDTE--DVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEI  157 (167)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHCCS--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhhCcC--CCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHH
Confidence            9999999999999999988887754333  7999999999999765443 667788888884345999999999 99999


Q ss_pred             HHHHHHHHh
Q 006490          581 FSRIIWAAE  589 (643)
Q Consensus       581 ~~~l~~~~~  589 (643)
                      +++|.+.+.
T Consensus       158 ~~~l~~~i~  166 (167)
T 1c1y_A          158 FYDLVRQIN  166 (167)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHh
Confidence            999998763

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.91  E-value=4.3e-24  Score=200.11  Aligned_cols=159  Identities=19%  Similarity=0.170  Sum_probs=122.5

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEE
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (643)
                      .++.+||+|+|++|||||||+++|+++.+....++..........++...+.+.+|||||++.     ..+++.+|++|+
T Consensus         4 ~~~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~il   78 (178)
T 2iwr_A            4 SIPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIF   78 (178)
T ss_dssp             CCCEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEE
Confidence            456799999999999999999999999886643433222233344555668899999999876     468899999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHhc----CCCCcEEEEEecccCCC--CCccchhhhhhhHHHHhhcccceEEEeCcccCC
Q 006490           89 TYACNQQSTLSRLSSYWLPELRRL----EIKVPIIVAGCKLDLRG--DHNATSLEEVMGPIMQQFREIETCVECSATTMI  162 (643)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~~----~~~~pvilv~NK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  162 (643)
                      |||++++.+++.+.. |..++...    .+++|+++|+||+|+..  .+.+  ..+....++..++. .+++++||++|.
T Consensus        79 v~D~~~~~s~~~~~~-~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v--~~~~~~~~~~~~~~-~~~~~~Sa~~~~  154 (178)
T 2iwr_A           79 VFSLEDENSFQAVSR-LHGQLSSLRGEGRGGLALALVGTQDRISASSPRVV--GDARARALXADMKR-CSYYETXATYGL  154 (178)
T ss_dssp             EEETTCHHHHHHHHH-HHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCS--CHHHHHHHHHHHSS-EEEEEEBTTTTB
T ss_pred             EEECcCHHHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccccCcC--CHHHHHHHHHhhcC-CeEEEEeccccC
Confidence            999999999999884 76666442    25799999999999953  2222  33445666666643 379999999999


Q ss_pred             ChhHHHHHHHHHHh
Q 006490          163 QVPDVFYYAQKAVL  176 (643)
Q Consensus       163 gi~~l~~~i~~~~~  176 (643)
                      |++++|+++.+.+.
T Consensus       155 ~i~~lf~~l~~~~~  168 (178)
T 2iwr_A          155 NVDRVFQEVAQKVV  168 (178)
T ss_dssp             THHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence            99999999988764

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.91  E-value=5.6e-24  Score=202.18  Aligned_cols=165  Identities=17%  Similarity=0.294  Sum_probs=133.3

Q ss_pred             cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCC
Q 006490          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (643)
Q Consensus       420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad  499 (643)
                      ....+||+|+|.+|||||||+|+|++..+...+.+|.+.++....+...+....+.+||++|++.+..+  +..+++.+|
T Consensus        23 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~--~~~~~~~~d  100 (192)
T 2il1_A           23 ADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSI--TSAYYRSAK  100 (192)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHH--HHHHHHHCS
T ss_pred             cCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHH--HHHHhcCCC
Confidence            455799999999999999999999999888777788877777777877766678889999999888777  778899999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CH
Q 006490          500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DL  577 (643)
Q Consensus       500 ~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i  577 (643)
                      ++++|||++++.+++.+..|+..+......   +.|+++|+||+|+...+.. .+..+++++.++..+++++||++| |+
T Consensus       101 ~iilV~D~~~~~s~~~~~~~~~~i~~~~~~---~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi  177 (192)
T 2il1_A          101 GIILVYDITKKETFDDLPKWMKMIDKYASE---DAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNV  177 (192)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCT---TCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCC---CCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCH
Confidence            999999999999999999998888766433   7999999999999765443 566778887753334999999999 99


Q ss_pred             HHHHHHHHHHHh
Q 006490          578 NNVFSRIIWAAE  589 (643)
Q Consensus       578 ~~l~~~l~~~~~  589 (643)
                      +++|++|.+.+.
T Consensus       178 ~~l~~~l~~~i~  189 (192)
T 2il1_A          178 DEIFLKLVDDIL  189 (192)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998764

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.91  E-value=2.3e-24  Score=203.28  Aligned_cols=165  Identities=25%  Similarity=0.375  Sum_probs=132.7

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-eeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEE
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il   87 (643)
                      ....+||+|+|++|||||||+++|++..+...+.++.+. ......+....+.+.+|||||++.+......+++.+|++|
T Consensus         4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   83 (184)
T 1m7b_A            4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL   83 (184)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEE
Confidence            456799999999999999999999998876654443332 2233445566788999999999988888889999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCC------------CccchhhhhhhHHHHhhcccceEEE
Q 006490           88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD------------HNATSLEEVMGPIMQQFREIETCVE  155 (643)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~  155 (643)
                      +|||++++.+++.+...|...++...+++|+++|+||+|+...            +.+  ..+....+++.++. .++++
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~-~~~~e  160 (184)
T 1m7b_A           84 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPV--SYDQGANMAKQIGA-ATYIE  160 (184)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCC--CHHHHHHHHHHHTC-SEEEE
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCC--CHHHHHHHHHHcCC-cEEEE
Confidence            9999999999999855799999887779999999999999743            122  23445667777653 37999


Q ss_pred             eCcc-cCCChhHHHHHHHHHHh
Q 006490          156 CSAT-TMIQVPDVFYYAQKAVL  176 (643)
Q Consensus       156 ~Sa~-~~~gi~~l~~~i~~~~~  176 (643)
                      |||+ +|.||+++|+.+.+.++
T Consensus       161 ~Sa~~~~~gi~~l~~~i~~~~l  182 (184)
T 1m7b_A          161 CSALQSENSVRDIFHVATLACV  182 (184)
T ss_dssp             CBTTTBHHHHHHHHHHHHHHHH
T ss_pred             eeecCCCcCHHHHHHHHHHHHh
Confidence            9999 68999999999998765

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.91  E-value=2.1e-24  Score=203.21  Aligned_cols=163  Identities=19%  Similarity=0.355  Sum_probs=112.7

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (643)
                      ...+||+|+|++|||||||+|+|++..+...+.||++.++....+..+|....+.+||++|++.+..+  +..+++.+|+
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~d~   83 (183)
T 2fu5_C            6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI--TTAYYRGAMG   83 (183)
T ss_dssp             SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC-----------CCTTTTTCSE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhh--HHHHHhcCCE
Confidence            45689999999999999999999998877666677777777777777766678889999999888776  6778899999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHH
Q 006490          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLN  578 (643)
Q Consensus       501 illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~  578 (643)
                      +++|||++++.+|+.+..|+..+......   +.|+++|+||+|+...+.. .+....+++.+++. ++++||++| |++
T Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~  159 (183)
T 2fu5_C           84 IMLVYDITNEKSFDNIRNWIRNIEEHASA---DVEKMILGNKCDVNDKRQVSKERGEKLALDYGIK-FMETSAKANINVE  159 (183)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCT---TCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCE-EEECCC---CCHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCC---CCCEEEEEECccCCccCcCCHHHHHHHHHHcCCe-EEEEeCCCCCCHH
Confidence            99999999999999999999988776432   7899999999999865443 67788899999986 999999999 999


Q ss_pred             HHHHHHHHHHh
Q 006490          579 NVFSRIIWAAE  589 (643)
Q Consensus       579 ~l~~~l~~~~~  589 (643)
                      ++|++|.+.+.
T Consensus       160 ~l~~~l~~~i~  170 (183)
T 2fu5_C          160 NAFFTLARDIK  170 (183)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998774

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.91  E-value=1e-23  Score=202.73  Aligned_cols=164  Identities=21%  Similarity=0.334  Sum_probs=129.2

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCcEEEEEEecCCchhh-hhhhccHHhhccC
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV-KKILSNKEALASC  498 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~-~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~-~~~~~~~~~~~~a  498 (643)
                      ...+||+|+|++|||||||+|+|++........ ++++.++....+.+.|....+.+||++|++.. ..+  ...+++.+
T Consensus        35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l--~~~~~~~a  112 (211)
T 2g3y_A           35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWL--HDHCMQVG  112 (211)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHH--HHCCCCCC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhH--HHHHHhhC
Confidence            456899999999999999999999865433222 45555566666777766667789999998763 334  45667899


Q ss_pred             CEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-C
Q 006490          499 DVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-D  576 (643)
Q Consensus       499 d~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~  576 (643)
                      |++++|||++++.+|+.+..|...+.......  ++|+++|+||+|+...+.. .++.+.++..+++. +++|||++| |
T Consensus       113 ~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~--~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~-~~e~SAk~g~~  189 (211)
T 2g3y_A          113 DAYLIVYSITDRASFEKASELRIQLRRARQTE--DIPIILVGNKSDLVRCREVSVSEGRACAVVFDCK-FIETSAAVQHN  189 (211)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHTSGGGT--TSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEECBTTTTBS
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCC--CCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCE-EEEEeCCCCCC
Confidence            99999999999999999999988876543222  7999999999999764433 55667788888886 999999999 9


Q ss_pred             HHHHHHHHHHHHh
Q 006490          577 LNNVFSRIIWAAE  589 (643)
Q Consensus       577 i~~l~~~l~~~~~  589 (643)
                      ++++|+.|++.+.
T Consensus       190 v~elf~~l~~~i~  202 (211)
T 2g3y_A          190 VKELFEGIVRQVR  202 (211)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999774

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.91  E-value=1.5e-23  Score=201.53  Aligned_cols=163  Identities=23%  Similarity=0.353  Sum_probs=142.3

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (643)
                      ...+||+|+|++|||||||+|+|++..+...+.+|++.++....+..++....+.+||++|++.+..+  +..+++.+|+
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~d~   83 (206)
T 2bcg_Y            6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTI--TSSYYRGSHG   83 (206)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCC--CGGGGTTCSE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHH--HHHhccCCCE
Confidence            45689999999999999999999999988888788888888777888766678889999999888777  7788999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHH
Q 006490          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLN  578 (643)
Q Consensus       501 illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~  578 (643)
                      +++|||++++.+++.+..|+..+......   +.|+++|+||+|+...+.. .+....+++..+++ ++++||++| |++
T Consensus        84 vilv~d~~~~~s~~~~~~~~~~i~~~~~~---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~g~gi~  159 (206)
T 2bcg_Y           84 IIIVYDVTDQESFNGVKMWLQEIDRYATS---TVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMP-FLETSALDSTNVE  159 (206)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCT---TCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCC-EEECCTTTCTTHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCC---CCCEEEEEECCCCccccccCHHHHHHHHHHcCCe-EEEEeCCCCCCHH
Confidence            99999999999999999999988776532   7899999999999875433 56778888888886 999999999 999


Q ss_pred             HHHHHHHHHHh
Q 006490          579 NVFSRIIWAAE  589 (643)
Q Consensus       579 ~l~~~l~~~~~  589 (643)
                      ++|++|.+.+.
T Consensus       160 ~l~~~l~~~i~  170 (206)
T 2bcg_Y          160 DAFLTMARQIK  170 (206)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999764

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.91  E-value=1.7e-23  Score=200.59  Aligned_cols=163  Identities=19%  Similarity=0.335  Sum_probs=141.1

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (643)
                      ...+||+|+|.+|||||||+|+|++..+...+.+|.+.++....+...+....+.+||++|.+.+..+  +..+++.+|+
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~d~   83 (203)
T 1zbd_A            6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTI--TTAYYRGAMG   83 (203)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHH--HHTTGGGCSE
T ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcch--HHHhhcCCCE
Confidence            35689999999999999999999999988777788777777777777766778899999999888877  7788999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHH
Q 006490          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLN  578 (643)
Q Consensus       501 illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~  578 (643)
                      +++|||++++.+++.+..|+..+......   +.|+++|+||+|+...+.. .+....+++.++++ ++++||++| |++
T Consensus        84 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~  159 (203)
T 1zbd_A           84 FILMYDITNEESFNAVQDWSTQIKTYSWD---NAQVLLVGNKCDMEDERVVSSERGRQLADHLGFE-FFEASAKDNINVK  159 (203)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCS---SCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCE-EEECBTTTTBSSH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCC---CCCEEEEEECcccCcccccCHHHHHHHHHHCCCe-EEEEECCCCCCHH
Confidence            99999999999999999999988776422   7899999999999765433 67788899999986 999999999 999


Q ss_pred             HHHHHHHHHHh
Q 006490          579 NVFSRIIWAAE  589 (643)
Q Consensus       579 ~l~~~l~~~~~  589 (643)
                      ++|++|.+.+.
T Consensus       160 ~l~~~l~~~i~  170 (203)
T 1zbd_A          160 QTFERLVDVIC  170 (203)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998764

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.91  E-value=5e-24  Score=200.99  Aligned_cols=168  Identities=24%  Similarity=0.342  Sum_probs=135.1

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEE
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (643)
                      ++.+||+++|++|||||||+++|+++.+...+.++.+... ....+....+.+.+|||||++.+...+..+++.+|++++
T Consensus         3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   82 (186)
T 1mh1_A            3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI   82 (186)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence            5679999999999999999999999887666544443322 334455667889999999999988888899999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCc-----------cchhhhhhhHHHHhhcccceEEEeC
Q 006490           89 TYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----------ATSLEEVMGPIMQQFREIETCVECS  157 (643)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~S  157 (643)
                      |||++++.+++.+...|...+....+++|+++|+||+|+.....           . ...+....+...++. .++++||
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~-~~~~~~S  160 (186)
T 1mh1_A           83 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTP-ITYPQGLAMAKEIGA-VKYLECS  160 (186)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCC-CCHHHHHHHHHHTTC-SEEEECC
T ss_pred             EEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhccccccc-CCHHHHHHHHHhcCC-cEEEEec
Confidence            99999999999987669999988777899999999999875421           1 122334556666652 3799999


Q ss_pred             cccCCChhHHHHHHHHHHhCCC
Q 006490          158 ATTMIQVPDVFYYAQKAVLHPT  179 (643)
Q Consensus       158 a~~~~gi~~l~~~i~~~~~~~~  179 (643)
                      |++|.|++++|+++.+.+..+.
T Consensus       161 a~~g~gi~~l~~~l~~~~~~~~  182 (186)
T 1mh1_A          161 ALTQRGLKTVFDEAIRAVLCPP  182 (186)
T ss_dssp             TTTCTTHHHHHHHHHHHHSCCC
T ss_pred             CCCccCHHHHHHHHHHHHhccc
Confidence            9999999999999999887543

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.91  E-value=2.7e-24  Score=204.13  Aligned_cols=164  Identities=19%  Similarity=0.331  Sum_probs=143.4

Q ss_pred             cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCC
Q 006490          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (643)
Q Consensus       420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad  499 (643)
                      ....+||+|+|.+|||||||+|+|++..+...+.+|.+.++....+...+....+.+||++|++.+..+  +..+++.+|
T Consensus        20 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d   97 (191)
T 3dz8_A           20 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTI--TTAYYRGAM   97 (191)
T ss_dssp             EEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHH--HHHHHTTCC
T ss_pred             cCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHH--HHHHHccCC
Confidence            346799999999999999999999999888777777777777777777777788999999999888877  788899999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CH
Q 006490          500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DL  577 (643)
Q Consensus       500 ~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i  577 (643)
                      ++++|||++++.+|+.+..|+..+......   +.|+++|+||+|+...+.. .+..+.+++.+++. ++++||++| |+
T Consensus        98 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi  173 (191)
T 3dz8_A           98 GFILMYDITNEESFNAVQDWATQIKTYSWD---NAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFD-FFEASAKENISV  173 (191)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCT---TCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEECBTTTTBSH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCC---CCCEEEEEECCCCccccccCHHHHHHHHHHcCCe-EEEEECCCCCCH
Confidence            999999999999999999999998876532   7999999999999765443 67788899999986 999999999 99


Q ss_pred             HHHHHHHHHHHh
Q 006490          578 NNVFSRIIWAAE  589 (643)
Q Consensus       578 ~~l~~~l~~~~~  589 (643)
                      +++|++|.+.+.
T Consensus       174 ~~l~~~l~~~i~  185 (191)
T 3dz8_A          174 RQAFERLVDAIC  185 (191)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999999775

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.91  E-value=7.9e-24  Score=195.61  Aligned_cols=161  Identities=22%  Similarity=0.353  Sum_probs=136.6

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEE
Q 006490          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~il  502 (643)
                      .+||+++|++|||||||+|+|+++.+...+.+|+.+.+ ...+...+....+.+||++|++.+..+  ...+++.+|+++
T Consensus         3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~--~~~~~~~~~~~i   79 (167)
T 1kao_A            3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-RKEIEVDSSPSVLEILDTAGTEQFASM--RDLYIKNGQGFI   79 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHH--HHHHHHHCSEEE
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE-EEEEEECCEEEEEEEEECCCchhhHHH--HHHHhccCCEEE
Confidence            58999999999999999999999988877777766544 455666656667889999999888776  677889999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHHH
Q 006490          503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNNV  580 (643)
Q Consensus       503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l  580 (643)
                      +|+|++++.+++.+..|+..+.......  +.|+++|+||+|+...+.. .+....+++.++++ ++++||++| |++++
T Consensus        80 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~l  156 (167)
T 1kao_A           80 LVYSLVNQQSFQDIKPMRDQIIRVKRYE--KVPVILVGNKVDLESEREVSSSEGRALAEEWGCP-FMETSAKSKTMVDEL  156 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHTTTS--CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSC-EEEECTTCHHHHHHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEECCcccccccCCHHHHHHHHHHhCCC-EEEecCCCCcCHHHH
Confidence            9999999999999999998887765433  7999999999998764443 66778888889886 999999999 99999


Q ss_pred             HHHHHHHHh
Q 006490          581 FSRIIWAAE  589 (643)
Q Consensus       581 ~~~l~~~~~  589 (643)
                      +++|.+.+.
T Consensus       157 ~~~l~~~~~  165 (167)
T 1kao_A          157 FAEIVRQMN  165 (167)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999998764

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.91  E-value=9.4e-24  Score=195.82  Aligned_cols=160  Identities=21%  Similarity=0.304  Sum_probs=137.8

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEE
Q 006490          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~il  502 (643)
                      .+||+++|++|||||||+|+|++..+...+.+|.+.++....+...+....+.+||++|++.+..+  +..+++.+|+++
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~--~~~~~~~~d~~i   80 (170)
T 1ek0_A            3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASL--APXYYRNAQAAL   80 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGG--HHHHHTTCSEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhh--hhhhhccCcEEE
Confidence            589999999999999999999999888777788877777777777766678889999999888777  778899999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCc---c-ccHHHHHHHHHHhCCCCcEEeeeccC-CH
Q 006490          503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPY---T-MAVQDSARVTQELGIEPPIPVSMKSK-DL  577 (643)
Q Consensus       503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~---~-~~~~~~~~~~~~~~~~~~~~vSa~~g-~i  577 (643)
                      +|+|++++.+++.+..|+..+......   +.|+++|+||+|+...   + ...+....+++..++. ++++||++| |+
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~gi  156 (170)
T 1ek0_A           81 VVYDVTKPQSFIKARHWVKELHEQASK---DIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLL-FFETSAKTGENV  156 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCT---TCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCE-EEECCTTTCTTH
T ss_pred             EEEecCChHHHHHHHHHHHHHHHhcCC---CCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCE-EEEEeCCCCCCH
Confidence            999999999999999999888776532   7999999999999754   2 2256778888888886 999999999 99


Q ss_pred             HHHHHHHHHHH
Q 006490          578 NNVFSRIIWAA  588 (643)
Q Consensus       578 ~~l~~~l~~~~  588 (643)
                      +++|++|.+.+
T Consensus       157 ~~l~~~l~~~i  167 (170)
T 1ek0_A          157 NDVFLGIGEKI  167 (170)
T ss_dssp             HHHHHHHHTTS
T ss_pred             HHHHHHHHHHH
Confidence            99999998765

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.91  E-value=1.6e-23  Score=199.24  Aligned_cols=163  Identities=23%  Similarity=0.385  Sum_probs=138.6

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (643)
                      ...+||+++|++|||||||+++|++..+...+.+|++..+ ...+...+....+.+||++|++.+..+  +..+++.+|+
T Consensus        16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~--~~~~~~~~d~   92 (194)
T 2atx_A           16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRL--RPLSYPMTDV   92 (194)
T ss_dssp             EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTT--GGGGCTTCSE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHH--HHHhcCCCCE
Confidence            3568999999999999999999999988777778887665 345667766678889999999888777  6778999999


Q ss_pred             EEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcc-------------ccHHHHHHHHHHhCCCC
Q 006490          501 TIFVYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-------------MAVQDSARVTQELGIEP  566 (643)
Q Consensus       501 illv~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~-------------~~~~~~~~~~~~~~~~~  566 (643)
                      +++|||++++.+|+.+. .|+..+.....    ++|+++|+||+|+....             ...++..++++.+++.+
T Consensus        93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  168 (194)
T 2atx_A           93 FLICFSVVNPASFQNVKEEWVPELKEYAP----NVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACC  168 (194)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHST----TCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSC
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhCC----CCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcE
Confidence            99999999999999987 78888887654    79999999999997632             22567888999999856


Q ss_pred             cEEeeeccC-CHHHHHHHHHHHHhC
Q 006490          567 PIPVSMKSK-DLNNVFSRIIWAAEH  590 (643)
Q Consensus       567 ~~~vSa~~g-~i~~l~~~l~~~~~~  590 (643)
                      +++|||++| |++++|++|.+.+..
T Consensus       169 ~~~~Sa~~g~gi~~l~~~l~~~i~~  193 (194)
T 2atx_A          169 YVECSALTQKGLKTVFDEAIIAILT  193 (194)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             EEEeeCCCCCCHHHHHHHHHHHHhc
Confidence            999999999 999999999998764

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.91  E-value=9.7e-24  Score=200.61  Aligned_cols=165  Identities=18%  Similarity=0.265  Sum_probs=141.2

Q ss_pred             ccCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccC
Q 006490          419 TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASC  498 (643)
Q Consensus       419 ~~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~a  498 (643)
                      .....+||+|+|++|||||||+|+|++..+...+.+|.+.++....+...+....+.+||++|.+.+..+  +..+++.+
T Consensus        21 ~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~   98 (193)
T 2oil_A           21 DYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAI--TSAYYRGA   98 (193)
T ss_dssp             CCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTT--HHHHHTTC
T ss_pred             ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhh--hHHHhccC
Confidence            3456799999999999999999999999988888788777777777777766778889999999888776  77889999


Q ss_pred             CEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccc-cHHHHHHHHHHhCCCCcEEeeeccC-C
Q 006490          499 DVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-D  576 (643)
Q Consensus       499 d~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSa~~g-~  576 (643)
                      |++++|||++++.+++.+..|+..+......   +.|+++|+||+|+...+. ..+....+++..++. ++++||++| |
T Consensus        99 d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~g  174 (193)
T 2oil_A           99 VGALLVFDLTKHQTYAVVERWLKELYDHAEA---TIVVMLVGNKSDLSQAREVPTEEARMFAENNGLL-FLETSALDSTN  174 (193)
T ss_dssp             CEEEEEEETTCHHHHHTHHHHHHHHHTTSCT---TCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEEECTTTCTT
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhcCC---CCeEEEEEECCCcccccccCHHHHHHHHHHcCCE-EEEEeCCCCCC
Confidence            9999999999999999999999888765432   789999999999976443 366778888888886 999999999 9


Q ss_pred             HHHHHHHHHHHHh
Q 006490          577 LNNVFSRIIWAAE  589 (643)
Q Consensus       577 i~~l~~~l~~~~~  589 (643)
                      ++++|++|.+.+.
T Consensus       175 i~~l~~~l~~~i~  187 (193)
T 2oil_A          175 VELAFETVLKEIF  187 (193)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998764

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.91  E-value=9.8e-24  Score=200.46  Aligned_cols=163  Identities=20%  Similarity=0.324  Sum_probs=141.5

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (643)
                      ...+||+|+|.+|||||||+|+|++..+...+.+|.+..+....+...+....+.+||++|++.+..+  +..+++.+|+
T Consensus        21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d~   98 (192)
T 2fg5_A           21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSL--APMYYRGSAA   98 (192)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGG--THHHHTTCSE
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhh--hHHhhccCCE
Confidence            45699999999999999999999999887777788887777777777767778899999999888877  7888999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccc-cHHHHHHHHHHhCCCCcEEeeeccC-CHH
Q 006490          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-DLN  578 (643)
Q Consensus       501 illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSa~~g-~i~  578 (643)
                      +++|||++++.+++.+..|+..+......   ++|+++|+||+|+...+. ..+...++++.++++ +++|||++| |++
T Consensus        99 iilV~d~~~~~s~~~~~~~~~~i~~~~~~---~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~  174 (192)
T 2fg5_A           99 AVIVYDITKQDSFYTLKKWVKELKEHGPE---NIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAI-VVETSAKNAINIE  174 (192)
T ss_dssp             EEEEEETTCTHHHHHHHHHHHHHHHHSCT---TCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCE-EEECBTTTTBSHH
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhCCC---CCcEEEEEECcccccccccCHHHHHHHHHHcCCE-EEEEeCCCCcCHH
Confidence            99999999999999999999998776532   789999999999976433 366788888888876 999999999 999


Q ss_pred             HHHHHHHHHHh
Q 006490          579 NVFSRIIWAAE  589 (643)
Q Consensus       579 ~l~~~l~~~~~  589 (643)
                      +++++|.+.+.
T Consensus       175 ~l~~~l~~~i~  185 (192)
T 2fg5_A          175 ELFQGISRQIP  185 (192)
T ss_dssp             HHHHHHHHTCC
T ss_pred             HHHHHHHHHHH
Confidence            99999998764

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.91  E-value=4.9e-24  Score=197.18  Aligned_cols=160  Identities=19%  Similarity=0.178  Sum_probs=109.7

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEE
Q 006490           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA   91 (643)
Q Consensus        12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d   91 (643)
                      .+||+|+|++|||||||+|+|++..+....+....+......+....+.+.+|||+|++.+......+++.+|++++|||
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d   81 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYS   81 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEE
Confidence            58999999999999999999998775443332222222344566677889999999999988889999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHHH
Q 006490           92 CNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY  169 (643)
Q Consensus        92 ~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  169 (643)
                      ++++.+++.+.. |...+...  ..++|+++|+||+|+...+..  ..+....+...++  .+++++||++|.|++++|+
T Consensus        82 ~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~  156 (166)
T 3q72_A           82 VTDKGSFEKASE-LRVQLRRARQTDDVPIILVGNKSDLVRSREV--SVDEGRACAVVFD--CKFIETSAALHHNVQALFE  156 (166)
T ss_dssp             TTCHHHHHHHHH-HHHHHHHCC---CCCEEEEEECTTCCSSCCS--CHHHHHHHHHHTT--CEEEECBGGGTBSHHHHHH
T ss_pred             CCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEecccccccccc--CHHHHHHHHHHhC--CcEEEeccCCCCCHHHHHH
Confidence            999999999885 77777654  358999999999999876554  3344456666665  3799999999999999999


Q ss_pred             HHHHHHh
Q 006490          170 YAQKAVL  176 (643)
Q Consensus       170 ~i~~~~~  176 (643)
                      ++.+.+.
T Consensus       157 ~l~~~~~  163 (166)
T 3q72_A          157 GVVRQIR  163 (166)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988754

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.91  E-value=9.9e-24  Score=199.11  Aligned_cols=163  Identities=19%  Similarity=0.338  Sum_probs=140.9

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (643)
                      ...+||+|+|++|||||||+|+|++..+...+.+|++.++....+..++....+.+||++|++.+..+  +..+++.+|+
T Consensus         8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~d~   85 (186)
T 2bme_A            8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSV--TRSYYRGAAG   85 (186)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHH--HHTTSTTCSE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHH--HHHHHhcCCE
Confidence            45699999999999999999999999988888788887777777777766668889999999888877  7788999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHH
Q 006490          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLN  578 (643)
Q Consensus       501 illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~  578 (643)
                      +++|||++++.+++.+..|+..+......   +.|+++|+||+|+...+.. .+....+++..++. ++++||++| |++
T Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~  161 (186)
T 2bme_A           86 ALLVYDITSRETYNALTNWLTDARMLASQ---NIVIILCGNKKDLDADREVTFLEASRFAQENELM-FLETSALTGENVE  161 (186)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCT---TCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEECCTTTCTTHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCC---CCcEEEEEECcccccccccCHHHHHHHHHHcCCE-EEEecCCCCCCHH
Confidence            99999999999999999999888765432   7999999999999754333 56778888888886 999999999 999


Q ss_pred             HHHHHHHHHHh
Q 006490          579 NVFSRIIWAAE  589 (643)
Q Consensus       579 ~l~~~l~~~~~  589 (643)
                      ++|+++.+.+.
T Consensus       162 ~l~~~l~~~~~  172 (186)
T 2bme_A          162 EAFVQCARKIL  172 (186)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998764

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.91  E-value=1.7e-23  Score=202.19  Aligned_cols=164  Identities=25%  Similarity=0.412  Sum_probs=140.5

Q ss_pred             cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCC
Q 006490          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (643)
Q Consensus       420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad  499 (643)
                      ....++|+|+|++|||||||+|+|++..+...+.+|++.++....+..+|....+.+||++|++.+..+  +..+++.+|
T Consensus        17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~d   94 (213)
T 3cph_A           17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTI--TTAYYRGAM   94 (213)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCC--CHHHHTTCS
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHH--HHHHhccCC
Confidence            455799999999999999999999999887777788887788788888866678889999999888776  788899999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC-CHH
Q 006490          500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLN  578 (643)
Q Consensus       500 ~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g-~i~  578 (643)
                      ++++|||++++.+++.+..|+..+......   +.|+++|+||+|+.......+....+++.++++ ++++||++| |++
T Consensus        95 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~  170 (213)
T 3cph_A           95 GIILVYDVTDERTFTNIKQWFKTVNEHAND---EAQLLLVGNKSDMETRVVTADQGEALAKELGIP-FIESSAKNDDNVN  170 (213)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHTTT---CSEEEEEEECTTCSSCCSCHHHHHHHHHHHTCC-EEECBTTTTBSSH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCC---CCCEEEEEECCCCcccccCHHHHHHHHHHcCCE-EEEEeCCCCCCHH
Confidence            999999999999999999999888776542   689999999999955444467788889999986 999999999 999


Q ss_pred             HHHHHHHHHHh
Q 006490          579 NVFSRIIWAAE  589 (643)
Q Consensus       579 ~l~~~l~~~~~  589 (643)
                      ++|++|.+.+.
T Consensus       171 ~l~~~l~~~~~  181 (213)
T 3cph_A          171 EIFFTLAKLIQ  181 (213)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998764

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.91  E-value=7.5e-24  Score=202.69  Aligned_cols=164  Identities=21%  Similarity=0.354  Sum_probs=131.9

Q ss_pred             cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCC
Q 006490          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (643)
Q Consensus       420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad  499 (643)
                      ....+||+|+|++|||||||+|+|++..+...+.+|++.++....+..++....+.+||++|++.+..+  +..+++.+|
T Consensus        22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~--~~~~~~~~d   99 (200)
T 2o52_A           22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSV--TRSYYRGAA   99 (200)
T ss_dssp             CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCC--CHHHHTTCS
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHH--HHHHhccCC
Confidence            345799999999999999999999999988888788887777777878766678889999999888777  788899999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CH
Q 006490          500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DL  577 (643)
Q Consensus       500 ~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i  577 (643)
                      ++|+|||++++.+++.+..|+..+......   +.|+++|+||+|+...+.. ..+...+++..++. +++|||++| |+
T Consensus       100 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~SA~~g~gi  175 (200)
T 2o52_A          100 GALLVYDITSRETYNSLAAWLTDARTLASP---NIVVILCGNKKDLDPEREVTFLEASRFAQENELM-FLETSALTGENV  175 (200)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHTCT---TCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEEECTTTCTTH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCC---CCcEEEEEECCCcccccccCHHHHHHHHHHcCCE-EEEEeCCCCCCH
Confidence            999999999999999999999888765432   7999999999999764433 56778888888886 999999999 99


Q ss_pred             HHHHHHHHHHHh
Q 006490          578 NNVFSRIIWAAE  589 (643)
Q Consensus       578 ~~l~~~l~~~~~  589 (643)
                      +++|++|.+.+.
T Consensus       176 ~~l~~~l~~~i~  187 (200)
T 2o52_A          176 EEAFLKCARTIL  187 (200)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998764

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.91  E-value=4.6e-24  Score=206.10  Aligned_cols=170  Identities=26%  Similarity=0.381  Sum_probs=135.7

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe-eeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEE
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il   87 (643)
                      ....+||+|+|++|||||||+++|++..+...+.++.+.. .....++...+.+.+|||||++.+...+..+++.+|++|
T Consensus         6 ~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   85 (212)
T 2j0v_A            6 VSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   85 (212)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred             cCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence            4567999999999999999999999988876655544433 233345566789999999999999888889999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCcc------chhhhhhhHHHHhhcccceEEEeCcccC
Q 006490           88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA------TSLEEVMGPIMQQFREIETCVECSATTM  161 (643)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  161 (643)
                      +|||++++.+++.+...|+..++...+++|+++|+||+|+......      ....+....+...++. .+++++||++|
T Consensus        86 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~Sa~~g  164 (212)
T 2j0v_A           86 LAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGA-AAYIECSSKTQ  164 (212)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTC-SEEEECCTTTC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCC-ceEEEccCCCC
Confidence            9999999999999876799999887778999999999998654321      0123445667777663 37999999999


Q ss_pred             CChhHHHHHHHHHHhCCC
Q 006490          162 IQVPDVFYYAQKAVLHPT  179 (643)
Q Consensus       162 ~gi~~l~~~i~~~~~~~~  179 (643)
                      .||+++|+++.+.+....
T Consensus       165 ~gi~~l~~~l~~~~~~~~  182 (212)
T 2j0v_A          165 QNVKAVFDTAIKVVLQPP  182 (212)
T ss_dssp             TTHHHHHHHHHHHHHCC-
T ss_pred             CCHHHHHHHHHHHHhhhh
Confidence            999999999999887553

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.91  E-value=1.7e-23  Score=195.32  Aligned_cols=162  Identities=18%  Similarity=0.309  Sum_probs=123.6

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhh--hhhhccHHhhccCC
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV--KKILSNKEALASCD  499 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~--~~~~~~~~~~~~ad  499 (643)
                      ..+||+|+|++|||||||+|+|++..+...+. +++.+.....+...+....+.+||++|++..  ..+  ...+++.+|
T Consensus         3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~--~~~~~~~~~   79 (175)
T 2nzj_A            3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHE-QLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWS--QESCLQGGS   79 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCC-----CC-CSSSSEEEEEEEETTEEEEEEEECCC-------CHH--HHHTTTSCS
T ss_pred             eEEEEEEECCCCccHHHHHHHHhcCCCccccC-ccccceeEEEEEECCEEEEEEEEecCCCCccchhhh--HHhhcccCC
Confidence            46899999999999999999999998876654 4444555566677766667889999998773  334  566788999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CH
Q 006490          500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DL  577 (643)
Q Consensus       500 ~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i  577 (643)
                      ++++|||++++.+|+.+..|+..+.......  ++|+++|+||+|+...+.. .+....++..++++ +++|||++| |+
T Consensus        80 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~--~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~g~gi  156 (175)
T 2nzj_A           80 AYVIVYSIADRGSFESASELRIQLRRTHQAD--HVPIILVGNKADLARCREVSVEEGRACAVVFDCK-FIETSATLQHNV  156 (175)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHCC------CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSE-EEECBTTTTBSH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhhccC--CCCEEEEEEChhhccccccCHHHHHHHHHHcCCe-EEEEecCCCCCH
Confidence            9999999999999999999998887653322  7999999999999865443 56677888888876 999999999 99


Q ss_pred             HHHHHHHHHHHh
Q 006490          578 NNVFSRIIWAAE  589 (643)
Q Consensus       578 ~~l~~~l~~~~~  589 (643)
                      +++|++|.+.+.
T Consensus       157 ~~l~~~l~~~~~  168 (175)
T 2nzj_A          157 AELFEGVVRQLR  168 (175)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998764

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.91  E-value=9.5e-24  Score=198.05  Aligned_cols=164  Identities=18%  Similarity=0.357  Sum_probs=138.5

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (643)
                      ...+||+|+|.+|||||||+|+|++..+...+.+|++..+. ..+...+....+.+||++|++.+..+  ...+++.+|+
T Consensus         7 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~--~~~~~~~~d~   83 (181)
T 2fn4_A            7 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAM--REQYMRAGHG   83 (181)
T ss_dssp             SCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCC--HHHHHHHCSE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHH--HHHHHhhCCE
Confidence            45689999999999999999999999888777778777655 55666655677889999999888776  6778899999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHH
Q 006490          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLN  578 (643)
Q Consensus       501 illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~  578 (643)
                      +++|||++++.+++.+..|+..+.......  +.|+++|+||+|+...+.. .+....++...++. ++++||++| |++
T Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~gv~  160 (181)
T 2fn4_A           84 FLLVFAINDRQSFNEVGKLFTQILRVKDRD--DFPVVLVGNKADLESQRQVPRSEASAFGASHHVA-YFEASAKLRLNVD  160 (181)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHTSS--CCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEECBTTTTBSHH
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEECcccccccccCHHHHHHHHHHcCCe-EEEecCCCCCCHH
Confidence            999999999999999999998885544333  7899999999999765444 66778888888886 999999999 999


Q ss_pred             HHHHHHHHHHhC
Q 006490          579 NVFSRIIWAAEH  590 (643)
Q Consensus       579 ~l~~~l~~~~~~  590 (643)
                      ++|++|.+.+..
T Consensus       161 ~l~~~l~~~~~~  172 (181)
T 2fn4_A          161 EAFEQLVRAVRK  172 (181)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998753

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.91  E-value=1.3e-23  Score=199.81  Aligned_cols=164  Identities=18%  Similarity=0.302  Sum_probs=142.0

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i  501 (643)
                      ..+||+|+|++|||||||+|+|++..+...+.+|.+.++....+...+....+.+||++|++.+..+  +..+++.+|++
T Consensus        14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d~i   91 (195)
T 1x3s_A           14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTL--TPSYYRGAQGV   91 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCS--HHHHHTTCCEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhh--hHHHhccCCEE
Confidence            4689999999999999999999999988777788877777777777766778899999999888776  77889999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC-CHHHH
Q 006490          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNV  580 (643)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l  580 (643)
                      ++|+|++++.+++.+..|+..+.......  ++|+++|+||+|+.......+....+++..++. ++++||++| |++++
T Consensus        92 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~l  168 (195)
T 1x3s_A           92 ILVYDVTRRDTFVKLDNWLNELETYCTRN--DIVNMLVGNKIDKENREVDRNEGLKFARKHSML-FIEASAKTCDGVQCA  168 (195)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHTTCCSCS--CCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCE-EEECCTTTCTTHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCcC--CCcEEEEEECCcCcccccCHHHHHHHHHHcCCE-EEEecCCCCCCHHHH
Confidence            99999999999999999998887654333  799999999999965444467788888888886 999999999 99999


Q ss_pred             HHHHHHHHhC
Q 006490          581 FSRIIWAAEH  590 (643)
Q Consensus       581 ~~~l~~~~~~  590 (643)
                      |++|.+.+..
T Consensus       169 ~~~l~~~~~~  178 (195)
T 1x3s_A          169 FEELVEKIIQ  178 (195)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHh
Confidence            9999998763

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.91  E-value=2.4e-23  Score=194.73  Aligned_cols=167  Identities=16%  Similarity=0.283  Sum_probs=136.5

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (643)
                      ...+||+|+|++|||||||+|+|++..+...+.+|++.++....+..++....+.+||++|++.+..+  +..+++.+|+
T Consensus         5 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~~~   82 (177)
T 1wms_A            5 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSL--RTPFYRGSDC   82 (177)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHH--HGGGGTTCSE
T ss_pred             cceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhh--HHHHHhcCCE
Confidence            35689999999999999999999999887777788877777777777766678889999999888777  6778899999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhcCCC-CCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC-CHH
Q 006490          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDS-GYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLN  578 (643)
Q Consensus       501 illv~D~s~~~s~~~~~~~~~~i~~~~~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g-~i~  578 (643)
                      +++|||++++.+++.+..|+..+....... ..+.|+++|+||+|+.......+...++++.....+++++||++| |++
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  162 (177)
T 1wms_A           83 CLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVA  162 (177)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHhcCCceEEEEeCCCCCCHH
Confidence            999999999999999999998887654310 117899999999999854445677788887554445999999999 999


Q ss_pred             HHHHHHHHHHh
Q 006490          579 NVFSRIIWAAE  589 (643)
Q Consensus       579 ~l~~~l~~~~~  589 (643)
                      ++|++|.+.+.
T Consensus       163 ~l~~~l~~~~~  173 (177)
T 1wms_A          163 AAFEEAVRRVL  173 (177)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999875

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.91  E-value=2.4e-23  Score=196.90  Aligned_cols=162  Identities=20%  Similarity=0.359  Sum_probs=136.8

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i  501 (643)
                      ..+||+|+|++|||||||+|+|++..+...+.+|+.+.+ ...+...+....+.+||++|++.+..+  ...++..+|++
T Consensus         3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~~~~   79 (189)
T 4dsu_A            3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAM--RDQYMRTGEGF   79 (189)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEE-EEEEEETTEEEEEEEEECCCC---CTT--HHHHHHHCSEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheE-EEEEEECCcEEEEEEEECCCcHHHHHH--HHHHHhcCCEE
Confidence            468999999999999999999999988777777775533 344556656667788999999988877  77889999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC-CHHHH
Q 006490          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNV  580 (643)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l  580 (643)
                      ++|||++++.+++.+..|+..+.......  +.|+++|+||+|+.......+....+++.++++ ++++||++| |++++
T Consensus        80 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~g~gi~~l  156 (189)
T 4dsu_A           80 LCVFAINNTKSFEDIHHYREQIKRVKDSE--DVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIP-FIETSAKTRQGVDDA  156 (189)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHTTCS--CCCEEEEEECTTSSSCSSCHHHHHHHHHHHTCC-EEECCTTTCTTHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCcEEEEEECccCcccccCHHHHHHHHHHcCCe-EEEEeCCCCCCHHHH
Confidence            99999999999999999999888765444  799999999999987665678888999999986 999999999 99999


Q ss_pred             HHHHHHHHh
Q 006490          581 FSRIIWAAE  589 (643)
Q Consensus       581 ~~~l~~~~~  589 (643)
                      |++|.+.+.
T Consensus       157 ~~~l~~~~~  165 (189)
T 4dsu_A          157 FYTLVREIR  165 (189)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999875

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.91  E-value=1.1e-23  Score=198.28  Aligned_cols=164  Identities=16%  Similarity=0.247  Sum_probs=133.6

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEE
Q 006490            8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV   86 (643)
Q Consensus         8 ~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i   86 (643)
                      ...+.+||+|+|++|||||||+|+|++..+...+.++.+... ....+....+.+.+|||||++.+...+..+++.+|++
T Consensus        14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~   93 (183)
T 3kkq_A           14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGF   93 (183)
T ss_dssp             CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEE
T ss_pred             cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence            356679999999999999999999999887766555443332 3334445567788899999999999999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHh--cCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcc-cCCC
Q 006490           87 VLTYACNQQSTLSRLSSYWLPELRR--LEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT-TMIQ  163 (643)
Q Consensus        87 l~v~d~~~~~s~~~~~~~~~~~l~~--~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~g  163 (643)
                      ++|||++++.+++.+. .|...+..  ...++|+++|+||+|+...+.+  ..+....++..++  .+++++||+ +|.|
T Consensus        94 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v--~~~~~~~~~~~~~--~~~~~~Sa~~~~~~  168 (183)
T 3kkq_A           94 LIVYSVTDKASFEHVD-RFHQLILRVKDRESFPMILVANKVDLMHLRKV--TRDQGKEMATKYN--IPYIETSAKDPPLN  168 (183)
T ss_dssp             EEEEETTCHHHHHTHH-HHHHHHHHHHTSSCCCEEEEEECTTCSTTCCS--CHHHHHHHHHHHT--CCEEEEBCSSSCBS
T ss_pred             EEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCcEEEEEECCCchhccCc--CHHHHHHHHHHhC--CeEEEeccCCCCCC
Confidence            9999999999999988 48777754  2358999999999999875554  3445677778777  479999999 9999


Q ss_pred             hhHHHHHHHHHHh
Q 006490          164 VPDVFYYAQKAVL  176 (643)
Q Consensus       164 i~~l~~~i~~~~~  176 (643)
                      ++++|+.+.+.+.
T Consensus       169 v~~l~~~l~~~i~  181 (183)
T 3kkq_A          169 VDKTFHDLVRVIR  181 (183)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988754

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.91  E-value=5e-24  Score=201.61  Aligned_cols=162  Identities=21%  Similarity=0.243  Sum_probs=127.5

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEE
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il   87 (643)
                      ....+||+|+|++|||||||+++|++..+...+.++.+... ....+....+.+.+|||+|++.+... ..+++.+|++|
T Consensus        18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~i   96 (187)
T 3c5c_A           18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFL   96 (187)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEE
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEE
Confidence            45679999999999999999999999988776555444332 33345566788999999999887664 67999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHhcC----CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCc-ccCC
Q 006490           88 LTYACNQQSTLSRLSSYWLPELRRLE----IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSA-TTMI  162 (643)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~l~~~~----~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa-~~~~  162 (643)
                      +|||++++.+++.+. .|+..+....    .++|+++|+||+|+...+.+  ..+....+++.++  .++++||| ++|.
T Consensus        97 lv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v--~~~~~~~~~~~~~--~~~~e~Sa~~~g~  171 (187)
T 3c5c_A           97 VVYSVDSRQSFDSSS-SYLELLALHAKETQRSIPALLLGNKLDMAQYRQV--TKAEGVALAGRFG--CLFFEVSACLDFE  171 (187)
T ss_dssp             EEEETTCHHHHHHHH-HHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSS--CHHHHHHHHHHHT--CEEEECCSSSCSH
T ss_pred             EEEECCCHHHHHHHH-HHHHHHHHHhhccCCCCCEEEEEECcchhhcCcc--CHHHHHHHHHHcC--CcEEEEeecCccc
Confidence            999999999999988 5888887642    58999999999999765444  2344566777776  37999999 8999


Q ss_pred             ChhHHHHHHHHHHh
Q 006490          163 QVPDVFYYAQKAVL  176 (643)
Q Consensus       163 gi~~l~~~i~~~~~  176 (643)
                      ||+++|+.+.+.+.
T Consensus       172 gv~~lf~~l~~~i~  185 (187)
T 3c5c_A          172 HVQHVFHEAVREAR  185 (187)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHh
Confidence            99999999988764

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.91  E-value=5e-24  Score=203.88  Aligned_cols=165  Identities=19%  Similarity=0.257  Sum_probs=130.5

Q ss_pred             CCCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCC
Q 006490            7 SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRAD   84 (643)
Q Consensus         7 ~~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad   84 (643)
                      ......+||+|+|++|||||||+|+|++..+.....++.+...  ....++...+.+.+|||||++.+...+..+++.+|
T Consensus        21 ~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d  100 (201)
T 2ew1_A           21 EDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSAN  100 (201)
T ss_dssp             -CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCS
T ss_pred             cccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCC
Confidence            3345568999999999999999999999887655443333222  22334455678999999999999888889999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCC
Q 006490           85 AVVLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQ  163 (643)
Q Consensus        85 ~il~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  163 (643)
                      ++|+|||++++.+++.+. .|+..+.... .++|+++|+||+|+...+.+  ..+..+.++...+  .++++|||++|.|
T Consensus       101 ~~i~v~D~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v--~~~~~~~~~~~~~--~~~~~~Sa~~g~g  175 (201)
T 2ew1_A          101 ALILTYDITCEESFRCLP-EWLREIEQYASNKVITVLVGNKIDLAERREV--SQQRAEEFSEAQD--MYYLETSAKESDN  175 (201)
T ss_dssp             EEEEEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECGGGGGGCSS--CHHHHHHHHHHHT--CCEEECCTTTCTT
T ss_pred             EEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECCCCcccccc--CHHHHHHHHHHcC--CEEEEEeCCCCCC
Confidence            999999999999999887 5888887654 47899999999999754443  2334456666655  3699999999999


Q ss_pred             hhHHHHHHHHHHh
Q 006490          164 VPDVFYYAQKAVL  176 (643)
Q Consensus       164 i~~l~~~i~~~~~  176 (643)
                      |+++|+++.+.+.
T Consensus       176 v~~l~~~l~~~i~  188 (201)
T 2ew1_A          176 VEKLFLDLACRLI  188 (201)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988764

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.91  E-value=3.4e-23  Score=198.52  Aligned_cols=161  Identities=20%  Similarity=0.283  Sum_probs=137.5

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCc-----------------------------
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGN-----------------------------  471 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~-----------------------------  471 (643)
                      +..+||+|+|++|||||||+|+|++..+...+.+|++.++....+...+..                             
T Consensus         5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (208)
T 3clv_A            5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN   84 (208)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence            457999999999999999999999999887777888877777777777544                             


Q ss_pred             --------EEEEEEecCCchhhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCC
Q 006490          472 --------KKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKD  543 (643)
Q Consensus       472 --------~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~  543 (643)
                              ..+.+||++|++.+..+  +..+++.+|++++|+|++++.+++.+..|+..+....     +.|+++|+||+
T Consensus        85 ~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~-----~~piilv~NK~  157 (208)
T 3clv_A           85 NYNENLCNIKFDIWDTAGQERYASI--VPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS-----NYIIILVANKI  157 (208)
T ss_dssp             CCCTTTCEEEEEEEECTTGGGCTTT--HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-----CCEEEEEEECT
T ss_pred             cccCccceeEEEEEECCCcHHHHHH--HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC-----CCcEEEEEECC
Confidence                    67889999999888776  7788999999999999999999999999998887753     58999999999


Q ss_pred             CCCCccccHHHHHHHHHHhCCCCcEEeeeccC-CHHHHHHHHHHHHh
Q 006490          544 DLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNVFSRIIWAAE  589 (643)
Q Consensus       544 Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l~~~l~~~~~  589 (643)
                      |+.......+.+.++++..++. ++++||++| |++++|++|.+.+.
T Consensus       158 D~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~l~~~l~~~~~  203 (208)
T 3clv_A          158 DKNKFQVDILEVQKYAQDNNLL-FIQTSAKTGTNIKNIFYMLAEEIY  203 (208)
T ss_dssp             TCC-CCSCHHHHHHHHHHTTCE-EEEECTTTCTTHHHHHHHHHHHHH
T ss_pred             CcccccCCHHHHHHHHHHcCCc-EEEEecCCCCCHHHHHHHHHHHHH
Confidence            9433334467888899999885 999999999 99999999998764

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.91  E-value=8.8e-24  Score=195.52  Aligned_cols=162  Identities=20%  Similarity=0.294  Sum_probs=128.1

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEE
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (643)
                      ++.+||+++|++|||||||+|+|++..+....+++.+... ....+....+.+.+|||||++++...+..+++.+|++++
T Consensus         2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (168)
T 1u8z_A            2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   81 (168)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence            4578999999999999999999999887666555443332 333455566789999999999998899999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHhcC--CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhH
Q 006490           89 TYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (643)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  166 (643)
                      |||++++.+++.+. .|...+....  .++|+++|+||+|+...+.. . .+....+...++  .+++++||++|.|+++
T Consensus        82 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~-~-~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~  156 (168)
T 1u8z_A           82 VFSITEMESFAATA-DFREQILRVKEDENVPFLLVGNKSDLEDKRQV-S-VEEAKNRADQWN--VNYVETSAKTRANVDK  156 (168)
T ss_dssp             EEETTCHHHHHHHH-HHHHHHHHHHCCTTSCEEEEEECGGGGGGCCS-C-HHHHHHHHHHHT--CEEEECCTTTCTTHHH
T ss_pred             EEECCCHHHHHHHH-HHHHHHHHhcCCCCCcEEEEEECccccccCcc-C-HHHHHHHHHHcC--CeEEEeCCCCCCCHHH
Confidence            99999999999987 4887776643  38999999999999765443 2 334556666665  3699999999999999


Q ss_pred             HHHHHHHHHh
Q 006490          167 VFYYAQKAVL  176 (643)
Q Consensus       167 l~~~i~~~~~  176 (643)
                      +|+++.+.+.
T Consensus       157 l~~~l~~~i~  166 (168)
T 1u8z_A          157 VFFDLMREIR  166 (168)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988764

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.91  E-value=5e-24  Score=199.55  Aligned_cols=166  Identities=20%  Similarity=0.278  Sum_probs=137.8

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCC-CcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPG-GNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g-~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (643)
                      ..+||+|+|++|||||||+|+|++..+...+.||++.++....+..++ ....+.+||++|++.+..+  +..+++.+|+
T Consensus         5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~--~~~~~~~~d~   82 (178)
T 2hxs_A            5 RQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKM--LDKYIYGAQG   82 (178)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTT--HHHHHTTCSE
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccch--hhHHHhhCCE
Confidence            468999999999999999999999887766667887777777787775 2467889999999888776  7788999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCc-EEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CH
Q 006490          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVP-CLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DL  577 (643)
Q Consensus       501 illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~p-vilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i  577 (643)
                      +++|||++++.+++.+..|+..+........ +.| +++|+||+|+...+.. .+....+++.++++ ++++||++| |+
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~-~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi  160 (178)
T 2hxs_A           83 VLLVYDITNYQSFENLEDWYTVVKKVSEESE-TQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFS-SHFVSAKTGDSV  160 (178)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHHHHT-CCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCE-EEEECTTTCTTH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhcccC-CCCeEEEEEEccccccccccCHHHHHHHHHHcCCc-EEEEeCCCCCCH
Confidence            9999999999999999999888876432100 345 8999999999764433 56788889999986 999999999 99


Q ss_pred             HHHHHHHHHHHhCC
Q 006490          578 NNVFSRIIWAAEHP  591 (643)
Q Consensus       578 ~~l~~~l~~~~~~~  591 (643)
                      +++|++|.+.+...
T Consensus       161 ~~l~~~l~~~~~~~  174 (178)
T 2hxs_A          161 FLCFQKVAAEILGI  174 (178)
T ss_dssp             HHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999988643

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.91  E-value=4e-24  Score=205.29  Aligned_cols=165  Identities=25%  Similarity=0.380  Sum_probs=132.0

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe-eeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEE
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il   87 (643)
                      ....+||+|+|++|||||||+|+|++..+...+.++.+.. .....++...+.+.+|||||++.+......+++.+|++|
T Consensus        25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  104 (205)
T 1gwn_A           25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL  104 (205)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEE
Confidence            4556899999999999999999999998866644433322 233345566788999999999998888889999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCC------------CccchhhhhhhHHHHhhcccceEEE
Q 006490           88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD------------HNATSLEEVMGPIMQQFREIETCVE  155 (643)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~  155 (643)
                      +|||++++.+++.+...|...++...++.|+++|+||+|+...            +.+  ..+....+++.++. .++++
T Consensus       105 lv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~-~~~~e  181 (205)
T 1gwn_A          105 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPV--SYDQGANMAKQIGA-ATYIE  181 (205)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCC--CHHHHHHHHHHHTC-SEEEE
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCC--CHHHHHHHHHHcCC-CEEEE
Confidence            9999999999999855799999887778999999999999742            122  23445667777653 36999


Q ss_pred             eCcc-cCCChhHHHHHHHHHHh
Q 006490          156 CSAT-TMIQVPDVFYYAQKAVL  176 (643)
Q Consensus       156 ~Sa~-~~~gi~~l~~~i~~~~~  176 (643)
                      |||+ +|.||+++|+.+.+.++
T Consensus       182 ~SAk~~~~gv~~lf~~l~~~~l  203 (205)
T 1gwn_A          182 CSALQSENSVRDIFHVATLACV  203 (205)
T ss_dssp             CCTTTCHHHHHHHHHHHHHHHH
T ss_pred             eeeccCCcCHHHHHHHHHHHHh
Confidence            9999 68999999999988764

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.91  E-value=4.2e-23  Score=196.05  Aligned_cols=164  Identities=13%  Similarity=0.260  Sum_probs=140.0

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceE-EEEEEcCCC---------cEEEEEEecCCchhhhhhhc
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYA-VNVVDQPGG---------NKKTLILQEIPEEGVKKILS  490 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~-~~~v~~~g~---------~~~~~i~d~~g~~~~~~~~~  490 (643)
                      ...+||+|+|++|||||||+|+|++..+...+.+|.+.++. ...+...+.         ...+.+||++|++.+..+  
T Consensus         9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--   86 (195)
T 3bc1_A            9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSL--   86 (195)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHH--
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHH--
Confidence            45699999999999999999999999887777777777666 566666644         568889999999888777  


Q ss_pred             cHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEE
Q 006490          491 NKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIP  569 (643)
Q Consensus       491 ~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~  569 (643)
                      +..+++.+|++++|+|++++.+++.+..|+..+.......  ++|+++|+||+|+...+.. .+...++++.++++ +++
T Consensus        87 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~  163 (195)
T 3bc1_A           87 TTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSE--NPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIP-YFE  163 (195)
T ss_dssp             HHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSS--SCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCC-EEE
T ss_pred             HHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEECcccccccccCHHHHHHHHHHcCCC-EEE
Confidence            7788999999999999999999999999999888765423  7999999999999764433 67788889999986 999


Q ss_pred             eeeccC-CHHHHHHHHHHHHh
Q 006490          570 VSMKSK-DLNNVFSRIIWAAE  589 (643)
Q Consensus       570 vSa~~g-~i~~l~~~l~~~~~  589 (643)
                      +||++| |++++|++|.+.+.
T Consensus       164 ~Sa~~~~~v~~l~~~l~~~~~  184 (195)
T 3bc1_A          164 TSAANGTNISHAIEMLLDLIM  184 (195)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHHHH
Confidence            999999 99999999998774

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.91  E-value=1.7e-23  Score=197.29  Aligned_cols=160  Identities=18%  Similarity=0.292  Sum_probs=132.2

Q ss_pred             ccCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccC
Q 006490          419 TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASC  498 (643)
Q Consensus       419 ~~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~a  498 (643)
                      .....+||+|+|++|||||||+|+|+++.+...+.+| ...+ ...+...|....+.+||++|++.+.       +++.+
T Consensus        16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t-~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~   86 (184)
T 3ihw_A           16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GGRF-KKEIVVDGQSYLLLIRDEGGPPELQ-------FAAWV   86 (184)
T ss_dssp             CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTT-CEEE-EEEEEETTEEEEEEEEECSSSCCHH-------HHHHC
T ss_pred             CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCC-cceE-EEEEEECCEEEEEEEEECCCChhhh-------eecCC
Confidence            3456799999999999999999999999988777666 3333 3666777666778899999987654       67889


Q ss_pred             CEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC--cc-ccHHHHHHHHHHhCCCCcEEeeeccC
Q 006490          499 DVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP--YT-MAVQDSARVTQELGIEPPIPVSMKSK  575 (643)
Q Consensus       499 d~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~--~~-~~~~~~~~~~~~~~~~~~~~vSa~~g  575 (643)
                      |++++|||++++.+|+.+..|+..+.......  +.|+++|+||+|+..  .+ ...+...++++.++..++++|||++|
T Consensus        87 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~  164 (184)
T 3ihw_A           87 DAVVFVFSLEDEISFQTVYNYFLRLCSFRNAS--EVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYG  164 (184)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHTTSCGG--GSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTT
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCC
Confidence            99999999999999999999999998764322  789999999999952  22 23677889999998445999999999


Q ss_pred             -CHHHHHHHHHHHHh
Q 006490          576 -DLNNVFSRIIWAAE  589 (643)
Q Consensus       576 -~i~~l~~~l~~~~~  589 (643)
                       |++++|++|.+.+.
T Consensus       165 ~gv~~lf~~l~~~i~  179 (184)
T 3ihw_A          165 LNVERVFQDVAQKVV  179 (184)
T ss_dssp             BTHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH
Confidence             99999999999765

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.91  E-value=8.5e-24  Score=202.37  Aligned_cols=166  Identities=27%  Similarity=0.367  Sum_probs=126.4

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEE
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il   87 (643)
                      ....+||+|+|++|||||||+++|++..+...++++.+... ....++...+.+.+|||||++.+...+..+++.+|++|
T Consensus        17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   96 (201)
T 2q3h_A           17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFL   96 (201)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEE
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEE
Confidence            56679999999999999999999999887766555443322 23334445678889999999999888889999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCC-----------ccchhhhhhhHHHHhhcccceEEEe
Q 006490           88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH-----------NATSLEEVMGPIMQQFREIETCVEC  156 (643)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~  156 (643)
                      +|||++++.+++.+...|+..+....+++|+++|+||+|+....           .. ...+....+...++. .++++|
T Consensus        97 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~-~~~~~~  174 (201)
T 2q3h_A           97 LCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKP-VPEEAAKLLAEEIKA-ASYIEC  174 (201)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCC-CCHHHHHHHHHHHTC-SEEEEC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhccccccc-CCHHHHHHHHHhcCC-cEEEEE
Confidence            99999999999998756999998877799999999999987531           11 123445666666652 369999


Q ss_pred             CcccCCChhHHHHHHHHHHh
Q 006490          157 SATTMIQVPDVFYYAQKAVL  176 (643)
Q Consensus       157 Sa~~~~gi~~l~~~i~~~~~  176 (643)
                      ||++|.||+++|+++.+.+.
T Consensus       175 Sa~~g~gi~~l~~~l~~~~~  194 (201)
T 2q3h_A          175 SALTQKNLKEVFDAAIVAGI  194 (201)
T ss_dssp             CTTTCTTHHHHHHHHHHHHH
T ss_pred             ecCCCCCHHHHHHHHHHHHh
Confidence            99999999999999988765

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.91  E-value=1.2e-23  Score=201.09  Aligned_cols=164  Identities=18%  Similarity=0.295  Sum_probs=129.5

Q ss_pred             cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCC
Q 006490          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (643)
Q Consensus       420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad  499 (643)
                      ....+||+|+|++|||||||+|+|++..+...+.+|.+.++....+...+....+.+||++|++.+..+  +..+++.+|
T Consensus        25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~d  102 (199)
T 2p5s_A           25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSI--AKSYFRKAD  102 (199)
T ss_dssp             ---CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHH--HHHHHHHCS
T ss_pred             cCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhh--HHHHHhhCC
Confidence            455799999999999999999999999887777777777777777777766678889999999888777  778899999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC------cc-ccHHHHHHHHHHhCCCCcEEeee
Q 006490          500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP------YT-MAVQDSARVTQELGIEPPIPVSM  572 (643)
Q Consensus       500 ~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~------~~-~~~~~~~~~~~~~~~~~~~~vSa  572 (643)
                      ++|+|||++++.+++.+..|+..+......   +.|+++|+||+|+..      .+ ...+....+++..++. +++|||
T Consensus       103 ~iilv~d~~~~~s~~~~~~~~~~i~~~~~~---~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~SA  178 (199)
T 2p5s_A          103 GVLLLYDVTCEKSFLNIREWVDMIEDAAHE---TVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGAL-FCETSA  178 (199)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHC------CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCE-EEECCT
T ss_pred             EEEEEEECCChHHHHHHHHHHHHHHHhcCC---CCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCe-EEEeeC
Confidence            999999999999999999999888765432   789999999999963      12 2256778888889986 999999


Q ss_pred             ccC-CHHHHHHHHHHHHh
Q 006490          573 KSK-DLNNVFSRIIWAAE  589 (643)
Q Consensus       573 ~~g-~i~~l~~~l~~~~~  589 (643)
                      ++| |++++|++|.+.+.
T Consensus       179 ~~g~gv~el~~~l~~~i~  196 (199)
T 2p5s_A          179 KDGSNIVEAVLHLAREVK  196 (199)
T ss_dssp             TTCTTHHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHH
Confidence            999 99999999998875

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.91  E-value=7.2e-24  Score=198.89  Aligned_cols=164  Identities=20%  Similarity=0.221  Sum_probs=130.5

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCE
Q 006490            8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADA   85 (643)
Q Consensus         8 ~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~   85 (643)
                      ...+.+||+|+|++|||||||+|+|++..+.....++.+...  ....+....+.+.+|||||.+.+...+..+++.+|+
T Consensus         5 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   84 (181)
T 3tw8_B            5 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHG   84 (181)
T ss_dssp             -CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSE
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCE
Confidence            345679999999999999999999999887655444333322  223344445889999999999888889999999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChh
Q 006490           86 VVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP  165 (643)
Q Consensus        86 il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  165 (643)
                      +|+|||++++.+++.+. .|+..+....+++|+++|+||+|+......  ..+....+...++  .+++++||++|.|++
T Consensus        85 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~  159 (181)
T 3tw8_B           85 VIVVYDVTSAESFVNVK-RWLHEINQNCDDVCRILVGNKNDDPERKVV--ETEDAYKFAGQMG--IQLFETSAKENVNVE  159 (181)
T ss_dssp             EEEEEETTCHHHHHHHH-HHHHHHHHHCTTSEEEEEEECTTCGGGCCS--CHHHHHHHHHHHT--CCEEECBTTTTBSHH
T ss_pred             EEEEEECCCHHHHHHHH-HHHHHHHHhCCCCCEEEEEECCCCchhccc--CHHHHHHHHHHcC--CeEEEEECCCCCCHH
Confidence            99999999999999987 599999887778999999999998765444  2344566666666  379999999999999


Q ss_pred             HHHHHHHHHHh
Q 006490          166 DVFYYAQKAVL  176 (643)
Q Consensus       166 ~l~~~i~~~~~  176 (643)
                      ++|+++.+.+.
T Consensus       160 ~l~~~l~~~~~  170 (181)
T 3tw8_B          160 EMFNCITELVL  170 (181)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988764

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.91  E-value=1.7e-23  Score=195.21  Aligned_cols=162  Identities=23%  Similarity=0.245  Sum_probs=118.4

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe-eeCCcccCCceeEEEEeCCCCCc--chhhhHHhhccCCEE
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLE--NKGKLNEELKRADAV   86 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~--~~~~~~~~~~~ad~i   86 (643)
                      ...+||+|+|++|||||||+|+|++..+....++...+. .....+....+.+.+|||||++.  +......+++.+|++
T Consensus         2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~   81 (175)
T 2nzj_A            2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY   81 (175)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred             ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence            356899999999999999999999988765544422222 23334455567899999999887  456667889999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCCh
Q 006490           87 VLTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQV  164 (643)
Q Consensus        87 l~v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  164 (643)
                      ++|||++++.+++.+. .|...+...  ..++|+++|+||+|+...+.+ .. +....+...++  .++++|||++|.|+
T Consensus        82 i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v-~~-~~~~~~~~~~~--~~~~~~Sa~~g~gi  156 (175)
T 2nzj_A           82 VIVYSIADRGSFESAS-ELRIQLRRTHQADHVPIILVGNKADLARCREV-SV-EEGRACAVVFD--CKFIETSATLQHNV  156 (175)
T ss_dssp             EEEEETTCHHHHHHHH-HHHHHHHHCC----CCEEEEEECTTCTTTCCS-CH-HHHHHHHHHHT--SEEEECBTTTTBSH
T ss_pred             EEEEECCCHHHHHHHH-HHHHHHHHhhccCCCCEEEEEEChhhcccccc-CH-HHHHHHHHHcC--CeEEEEecCCCCCH
Confidence            9999999999999988 488877664  348999999999999876554 32 33455666665  37999999999999


Q ss_pred             hHHHHHHHHHHh
Q 006490          165 PDVFYYAQKAVL  176 (643)
Q Consensus       165 ~~l~~~i~~~~~  176 (643)
                      +++|+++.+.+.
T Consensus       157 ~~l~~~l~~~~~  168 (175)
T 2nzj_A          157 AELFEGVVRQLR  168 (175)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988764

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.91  E-value=4.8e-24  Score=206.37  Aligned_cols=167  Identities=28%  Similarity=0.374  Sum_probs=115.1

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe-eeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEE
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (643)
                      .+.+||+|+|++|||||||+++|++..+...+.++.... .....+....+.+.+|||||++.+...+..+++.+|++|+
T Consensus        32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~  111 (214)
T 2j1l_A           32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLL  111 (214)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEE
Confidence            457999999999999999999999988766544433322 2333455567789999999999998888999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCcc----------chhhhhhhHHHHhhcccceEEEeCc
Q 006490           89 TYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA----------TSLEEVMGPIMQQFREIETCVECSA  158 (643)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~Sa  158 (643)
                      |||++++.+++.+...|...+....+++|+++|+||+|+......          ....+....+++.++. .++++|||
T Consensus       112 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~SA  190 (214)
T 2j1l_A          112 CFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGA-VAYLECSA  190 (214)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTC-SEEEECBT
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCC-CEEEEecC
Confidence            999999999999876799999887778999999999999764210          0122344566666652 36999999


Q ss_pred             ccCCChhHHHHHHHHHHhC
Q 006490          159 TTMIQVPDVFYYAQKAVLH  177 (643)
Q Consensus       159 ~~~~gi~~l~~~i~~~~~~  177 (643)
                      ++|.||+++|+++.+.+..
T Consensus       191 ~~g~gi~el~~~l~~~~~~  209 (214)
T 2j1l_A          191 RLHDNVHAVFQEAAEVALS  209 (214)
T ss_dssp             TTTBSHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHH
Confidence            9999999999999988753

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.91  E-value=8.7e-24  Score=198.61  Aligned_cols=165  Identities=17%  Similarity=0.174  Sum_probs=133.0

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEE
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (643)
                      .+.+||+|+|++|||||||+|+|+++.+...++++.+... ....+....+.+.+|||||++.+...+..+++.+|++++
T Consensus         4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~   83 (181)
T 3t5g_A            4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL   83 (181)
T ss_dssp             EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEE
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEE
Confidence            3578999999999999999999998888777665554433 333444556789999999999998888899999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhH
Q 006490           89 TYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (643)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  166 (643)
                      |||++++.+++.+.. |...+...  ..++|+++|+||+|+...+.+  ..+....++..++.  +++++||++|.|+++
T Consensus        84 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~--~~~~~Sa~~~~~v~~  158 (181)
T 3t5g_A           84 VYSVTSIKSFEVIKV-IHGKLLDMVGKVQIPIMLVGNKKDLHMERVI--SYEEGKALAESWNA--AFLESSAKENQTAVD  158 (181)
T ss_dssp             EEETTCHHHHHHHHH-HHHHHHHHC----CCEEEEEECTTCTTTCCS--CHHHHHHHHHHTTC--EEEECCTTSHHHHHH
T ss_pred             EEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccchhccee--cHHHHHHHHHHhCC--cEEEEecCCCCCHHH
Confidence            999999999999884 87777543  247999999999999766554  34556777777763  799999999999999


Q ss_pred             HHHHHHHHHhCCC
Q 006490          167 VFYYAQKAVLHPT  179 (643)
Q Consensus       167 l~~~i~~~~~~~~  179 (643)
                      +|+.+.+.+....
T Consensus       159 l~~~l~~~~~~~~  171 (181)
T 3t5g_A          159 VFRRIILEAEKMD  171 (181)
T ss_dssp             HHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999887554

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.91  E-value=1.8e-23  Score=193.35  Aligned_cols=160  Identities=21%  Similarity=0.337  Sum_probs=113.9

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEE
Q 006490          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~il  502 (643)
                      .+||+++|++|||||||+|+|.+....... ++.+..+ ...+...+....+.+||++|++.+..+  ...+++.+|+++
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~--~~~~~~~~~~~i   77 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDGPEA-EAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWL--PGHCMAMGDAYV   77 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC-----------------CCEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCccccCCC-Cccccce-EEEEEECCEEEEEEEEECCCCccchhh--hhhhhhhCCEEE
Confidence            479999999999999999999987765443 3333333 344556666778889999999988777  677889999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHHH
Q 006490          503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNNV  580 (643)
Q Consensus       503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l  580 (643)
                      +|||++++.+|+.+..|+..+.......  ++|+++|+||+|+.+.+.. .+....++...+++ ++++||++| |++++
T Consensus        78 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~l  154 (166)
T 3q72_A           78 IVYSVTDKGSFEKASELRVQLRRARQTD--DVPIILVGNKSDLVRSREVSVDEGRACAVVFDCK-FIETSAALHHNVQAL  154 (166)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHCC-----CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCE-EEECBGGGTBSHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEeccccccccccCHHHHHHHHHHhCCc-EEEeccCCCCCHHHH
Confidence            9999999999999999999887764333  7999999999999865443 66778888888886 999999999 99999


Q ss_pred             HHHHHHHHh
Q 006490          581 FSRIIWAAE  589 (643)
Q Consensus       581 ~~~l~~~~~  589 (643)
                      |++|.+.+.
T Consensus       155 ~~~l~~~~~  163 (166)
T 3q72_A          155 FEGVVRQIR  163 (166)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998765

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.91  E-value=1.2e-23  Score=196.97  Aligned_cols=163  Identities=23%  Similarity=0.286  Sum_probs=132.2

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEE
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV   86 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i   86 (643)
                      ....+||+|+|++|||||||+|+|++..+....+++.+...  ....+....+.+.+|||||++.+...+..+++.+|++
T Consensus        12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   91 (179)
T 1z0f_A           12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA   91 (179)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEE
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEE
Confidence            44579999999999999999999999987766555444332  3334455578899999999998888899999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChh
Q 006490           87 VLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP  165 (643)
Q Consensus        87 l~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  165 (643)
                      |+|||++++.+++.+. .|+..+.... .++|+++|+||+|+...+..  ..+....+.+.++  .+++++||++|.|++
T Consensus        92 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~  166 (179)
T 1z0f_A           92 LMVYDITRRSTYNHLS-SWLTDARNLTNPNTVIILIGNKADLEAQRDV--TYEEAKQFAEENG--LLFLEASAKTGENVE  166 (179)
T ss_dssp             EEEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCGGGCCS--CHHHHHHHHHHTT--CEEEECCTTTCTTHH
T ss_pred             EEEEeCcCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECccccccccc--CHHHHHHHHHHcC--CEEEEEeCCCCCCHH
Confidence            9999999999999887 5888887654 58999999999999754443  2344566666665  379999999999999


Q ss_pred             HHHHHHHHHHh
Q 006490          166 DVFYYAQKAVL  176 (643)
Q Consensus       166 ~l~~~i~~~~~  176 (643)
                      ++|+++.+.+.
T Consensus       167 ~l~~~l~~~i~  177 (179)
T 1z0f_A          167 DAFLEAAKKIY  177 (179)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHHh
Confidence            99999988764

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.91  E-value=1.8e-23  Score=195.81  Aligned_cols=162  Identities=20%  Similarity=0.361  Sum_probs=139.2

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i  501 (643)
                      ..+||+|+|++|||||||+|+|++..+...+.+|++.++....+...+....+.+||++|++.+..+  ...+++.+|++
T Consensus        13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~--~~~~~~~~d~~   90 (179)
T 2y8e_A           13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL--IPSYIRDSTVA   90 (179)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGG--SHHHHHTCSEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHH--HHHHhcCCCEE
Confidence            4589999999999999999999999888877788877777777777766678889999999888777  77889999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHH
Q 006490          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNN  579 (643)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~  579 (643)
                      ++|+|++++.+++.+..|+..+......   +.|+++|+||+|+.+.+.. .+....+++..++. ++++||++| |+++
T Consensus        91 i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~  166 (179)
T 2y8e_A           91 VVVYDITNTNSFHQTSKWIDDVRTERGS---DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVM-FIETSAKAGYNVKQ  166 (179)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTT---SSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCE-EEEEBTTTTBSHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCC---CCcEEEEEECCcccccCcCCHHHHHHHHHHcCCe-EEEEeCCCCCCHHH
Confidence            9999999999999999999888765432   7999999999999765443 56777888888886 999999999 9999


Q ss_pred             HHHHHHHHHh
Q 006490          580 VFSRIIWAAE  589 (643)
Q Consensus       580 l~~~l~~~~~  589 (643)
                      ++++|.+.+.
T Consensus       167 l~~~l~~~~~  176 (179)
T 2y8e_A          167 LFRRVAAALP  176 (179)
T ss_dssp             HHHHHHHTCC
T ss_pred             HHHHHHHHHh
Confidence            9999988653

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.91  E-value=2.9e-23  Score=191.99  Aligned_cols=162  Identities=23%  Similarity=0.402  Sum_probs=134.3

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i  501 (643)
                      ..+||+++|.+|||||||+|+|++..+...+.+|+...+. ..+...+....+.+||++|++.+..+  +..+++.+|++
T Consensus         3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~--~~~~~~~~d~~   79 (168)
T 1u8z_A            3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAI--RDNYFRSGEGF   79 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCC---CHHH--HHHHHHHCSEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEE-EEEEECCEEEEEEEEECCCcchhHHH--HHHHhhcCCEE
Confidence            3589999999999999999999999887777777766553 33455655667889999999888777  67888999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHH
Q 006490          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNN  579 (643)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~  579 (643)
                      ++|||++++.+++.+..|+..+.......  +.|+++|+||+|+...+.. .+....+++..+++ ++++||++| |+++
T Consensus        80 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~  156 (168)
T 1u8z_A           80 LCVFSITEMESFAATADFREQILRVKEDE--NVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVN-YVETSAKTRANVDK  156 (168)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHCCT--TSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCE-EEECCTTTCTTHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCcEEEEEECccccccCccCHHHHHHHHHHcCCe-EEEeCCCCCCCHHH
Confidence            99999999999999999999888765543  7999999999999765433 66788888888986 999999999 9999


Q ss_pred             HHHHHHHHHh
Q 006490          580 VFSRIIWAAE  589 (643)
Q Consensus       580 l~~~l~~~~~  589 (643)
                      +|+++.+.+.
T Consensus       157 l~~~l~~~i~  166 (168)
T 1u8z_A          157 VFFDLMREIR  166 (168)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998775

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.91  E-value=1.7e-23  Score=198.16  Aligned_cols=162  Identities=17%  Similarity=0.212  Sum_probs=131.5

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEE
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il   87 (643)
                      ...+||+|+|++|||||||+|+|++..+.....++.+.+.  .........+.+.+|||||++.+...+..+++.+|++|
T Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   99 (189)
T 2gf9_A           20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFL   99 (189)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEE
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEE
Confidence            3458999999999999999999999987665444344333  22334455788999999999999889999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhH
Q 006490           88 LTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (643)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  166 (643)
                      +|||++++.+++.+. .|+..+.... .++|+++|+||+|+...+..  ..+..+.+++.++  .+++++||++|.|+++
T Consensus       100 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~g~gi~~  174 (189)
T 2gf9_A          100 LMYDIANQESFAAVQ-DWATQIKTYSWDNAQVILVGNKCDLEDERVV--PAEDGRRLADDLG--FEFFEASAKENINVKQ  174 (189)
T ss_dssp             EEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCGGGCCS--CHHHHHHHHHHHT--CEEEECBTTTTBSHHH
T ss_pred             EEEECCCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECcccccccCC--CHHHHHHHHHHcC--CeEEEEECCCCCCHHH
Confidence            999999999999887 4888887654 58999999999999765443  2344567777776  3799999999999999


Q ss_pred             HHHHHHHHHh
Q 006490          167 VFYYAQKAVL  176 (643)
Q Consensus       167 l~~~i~~~~~  176 (643)
                      +|+++.+.+.
T Consensus       175 l~~~l~~~i~  184 (189)
T 2gf9_A          175 VFERLVDVIC  184 (189)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988754

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.91  E-value=1.8e-23  Score=200.26  Aligned_cols=165  Identities=24%  Similarity=0.362  Sum_probs=131.8

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-eeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEE
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (643)
                      ...+||+|+|++|||||||+++|++..+...+.++.+. ......+....+.+.+|||||++.+...+..+++.+|++|+
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~  102 (201)
T 2gco_A           23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM  102 (201)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEE
Confidence            34589999999999999999999998876664443332 22333444556789999999999988888899999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCc-----------cchhhhhhhHHHHhhcccceEEEeC
Q 006490           89 TYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----------ATSLEEVMGPIMQQFREIETCVECS  157 (643)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~S  157 (643)
                      |||++++.+++.+...|...++...+++|+++|+||+|+.....           . ...+....+++.++. .++++||
T Consensus       103 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~-~~~~~~S  180 (201)
T 2gco_A          103 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEP-VRSEEGRDMANRISA-FGYLECS  180 (201)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCC-CCHHHHHHHHHHTTC-SEEEECC
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCc-CCHHHHHHHHHhCCC-cEEEEee
Confidence            99999999999996679999988777899999999999976421           1 122344556666653 2699999


Q ss_pred             cccCCChhHHHHHHHHHHh
Q 006490          158 ATTMIQVPDVFYYAQKAVL  176 (643)
Q Consensus       158 a~~~~gi~~l~~~i~~~~~  176 (643)
                      |++|.||+++|+++.+.++
T Consensus       181 A~~g~gi~~l~~~i~~~~l  199 (201)
T 2gco_A          181 AKTKEGVREVFEMATRAGL  199 (201)
T ss_dssp             TTTCTTHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHh
Confidence            9999999999999988764

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.91  E-value=1.3e-23  Score=199.45  Aligned_cols=165  Identities=19%  Similarity=0.259  Sum_probs=129.7

Q ss_pred             CCCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCC
Q 006490            7 SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRAD   84 (643)
Q Consensus         7 ~~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad   84 (643)
                      ......+||+|+|++|||||||+|+|++..+.....++.+...  ....+....+.+.+|||||++.+...+..+++.+|
T Consensus        16 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   95 (191)
T 2a5j_A           16 PRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAA   95 (191)
T ss_dssp             CTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCS
T ss_pred             cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCC
Confidence            3456679999999999999999999999887655433333222  23344455688999999999998888999999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCC
Q 006490           85 AVVLTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQ  163 (643)
Q Consensus        85 ~il~v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  163 (643)
                      ++|+|||++++.+++.+. .|+..+... ..++|+++|+||+|+...+.+  ..+..+.++..++  .+++++||++|.|
T Consensus        96 ~ii~v~d~~~~~s~~~~~-~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v--~~~~~~~~~~~~~--~~~~~~Sa~~~~g  170 (191)
T 2a5j_A           96 GALLVYDITRRETFNHLT-SWLEDARQHSSSNMVIMLIGNKSDLESRRDV--KREEGEAFAREHG--LIFMETSAKTACN  170 (191)
T ss_dssp             EEEEEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCGGGCCS--CHHHHHHHHHHHT--CEEEEECTTTCTT
T ss_pred             EEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECcccCCcccc--CHHHHHHHHHHcC--CEEEEEeCCCCCC
Confidence            999999999999999987 488888664 358999999999999764443  2344566666665  3799999999999


Q ss_pred             hhHHHHHHHHHHh
Q 006490          164 VPDVFYYAQKAVL  176 (643)
Q Consensus       164 i~~l~~~i~~~~~  176 (643)
                      |+++|+++.+.+.
T Consensus       171 i~~l~~~l~~~i~  183 (191)
T 2a5j_A          171 VEEAFINTAKEIY  183 (191)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988764

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.91  E-value=7.7e-24  Score=202.78  Aligned_cols=165  Identities=18%  Similarity=0.264  Sum_probs=127.4

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEE
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV   86 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i   86 (643)
                      ....+||+|+|++|||||||+++|++..+...+.++.+...  ....+....+.+.+|||||++.+...+..+++.+|++
T Consensus        26 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i  105 (201)
T 2hup_A           26 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGA  105 (201)
T ss_dssp             CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEE
T ss_pred             cccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEE
Confidence            34468999999999999999999999887655433333222  2233444457899999999999999999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChh
Q 006490           87 VLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP  165 (643)
Q Consensus        87 l~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  165 (643)
                      |+|||++++.+++.+. .|+..+.... .++|++||+||+|+...+.+ . .+....+++.++. .++++|||++|.||+
T Consensus       106 ilv~D~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v-~-~~~~~~~~~~~~~-~~~~~~SA~~g~gi~  181 (201)
T 2hup_A          106 ILAYDITKRSSFLSVP-HWIEDVRKYAGSNIVQLLIGNKSDLSELREV-S-LAEAQSLAEHYDI-LCAIETSAKDSSNVE  181 (201)
T ss_dssp             EEEEETTBHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCGGGCCS-C-HHHHHHHHHHTTC-SEEEECBTTTTBSHH
T ss_pred             EEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECCcccccccc-C-HHHHHHHHHHcCC-CEEEEEeCCCCCCHH
Confidence            9999999999999988 5888887654 68999999999999765444 2 3445666676652 268999999999999


Q ss_pred             HHHHHHHHHHhC
Q 006490          166 DVFYYAQKAVLH  177 (643)
Q Consensus       166 ~l~~~i~~~~~~  177 (643)
                      ++|+++.+.+..
T Consensus       182 ~l~~~l~~~i~~  193 (201)
T 2hup_A          182 EAFLRVATELIM  193 (201)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999987753

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.91  E-value=4.6e-24  Score=204.86  Aligned_cols=166  Identities=23%  Similarity=0.323  Sum_probs=130.6

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEE
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il   87 (643)
                      ..+.+||+|+|++|||||||+++|+++.+.....++..... ....++...+.+.+|||||++.+...+..+++.+|++|
T Consensus        27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  106 (204)
T 4gzl_A           27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL  106 (204)
T ss_dssp             ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence            46679999999999999999999999888766555443322 33445566777889999999999889999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccc----------hhhhhhhHHHHhhcccceEEEeC
Q 006490           88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNAT----------SLEEVMGPIMQQFREIETCVECS  157 (643)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~S  157 (643)
                      +|||++++.+++.+...|...++...+++|+++|+||+|+.......          ...+....+++.++. .++++||
T Consensus       107 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~S  185 (204)
T 4gzl_A          107 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA-VKYLECS  185 (204)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTC-SEEEECC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCC-cEEEEee
Confidence            99999999999999767999998877889999999999987643200          122334556666653 3699999


Q ss_pred             cccCCChhHHHHHHHHHH
Q 006490          158 ATTMIQVPDVFYYAQKAV  175 (643)
Q Consensus       158 a~~~~gi~~l~~~i~~~~  175 (643)
                      |++|.||+++|+++.+.+
T Consensus       186 A~~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          186 ALTQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             TTTCTTHHHHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHHHHHh
Confidence            999999999999988754

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.91  E-value=1.9e-23  Score=203.59  Aligned_cols=164  Identities=23%  Similarity=0.331  Sum_probs=134.8

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (643)
                      ...+||+|+|++|||||||+|+|++..+...+.+|.+.++....+...+....+.+||++|++.+..+  +..+++.+|+
T Consensus        11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d~   88 (223)
T 3cpj_B           11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAI--TSAYYRGAVG   88 (223)
T ss_dssp             CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCC--CGGGTTTCCE
T ss_pred             CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhh--HHHHhccCCE
Confidence            45689999999999999999999999988888888888787777878766678889999999888777  7788999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHH
Q 006490          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLN  578 (643)
Q Consensus       501 illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~  578 (643)
                      +|+|||++++.+|+.+..|+..+......   ++|+++|+||+|+...+.. .+....+++..++. ++++||++| |++
T Consensus        89 vilV~D~~~~~s~~~~~~~l~~i~~~~~~---~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~  164 (223)
T 3cpj_B           89 ALIVYDISKSSSYENCNHWLSELRENADD---NVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLL-FTETSALNSENVD  164 (223)
T ss_dssp             EEEEEC-CCHHHHHHHHHHHHHHHHHCC-----CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCE-EEECCCC-CCCHH
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhCCC---CCeEEEEEECcccccccccCHHHHHHHHHHcCCE-EEEEeCCCCCCHH
Confidence            99999999999999999999988776432   7899999999999764433 56778888888876 999999999 999


Q ss_pred             HHHHHHHHHHhC
Q 006490          579 NVFSRIIWAAEH  590 (643)
Q Consensus       579 ~l~~~l~~~~~~  590 (643)
                      ++|++|.+.+..
T Consensus       165 ~l~~~l~~~i~~  176 (223)
T 3cpj_B          165 KAFEELINTIYQ  176 (223)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHH
Confidence            999999998754

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.91  E-value=1.9e-23  Score=197.67  Aligned_cols=164  Identities=19%  Similarity=0.283  Sum_probs=133.2

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (643)
                      ...+||+|+|++|||||||+|+|++..+...+.+|++..+. ..+...+....+.+||++|++.+..+   ..+++.+|+
T Consensus        19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~---~~~~~~~~~   94 (187)
T 3c5c_A           19 PLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYS-SEETVDHQPVHLRVMDTADLDTPRNC---ERYLNWAHA   94 (187)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCC---CCCT---HHHHTTCSE
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceee-EEEEECCEEEEEEEEECCCCCcchhH---HHHHhhCCE
Confidence            45699999999999999999999999888777788877653 34555656677889999999877654   468899999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeee-ccC-CH
Q 006490          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSM-KSK-DL  577 (643)
Q Consensus       501 illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa-~~g-~i  577 (643)
                      +++|||++++.+|+.+..|+..+.........+.|+++|+||+|+...+.. .++..++++.+++. +++||| ++| |+
T Consensus        95 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~Sa~~~g~gv  173 (187)
T 3c5c_A           95 FLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCL-FFEVSACLDFEHV  173 (187)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCE-EEECCSSSCSHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCc-EEEEeecCccccH
Confidence            999999999999999999999887653210017999999999999764433 67788899999986 999999 899 99


Q ss_pred             HHHHHHHHHHHh
Q 006490          578 NNVFSRIIWAAE  589 (643)
Q Consensus       578 ~~l~~~l~~~~~  589 (643)
                      +++|+.|.+.+.
T Consensus       174 ~~lf~~l~~~i~  185 (187)
T 3c5c_A          174 QHVFHEAVREAR  185 (187)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999998764

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.91  E-value=1.9e-23  Score=196.97  Aligned_cols=162  Identities=20%  Similarity=0.297  Sum_probs=135.3

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (643)
                      ...+||+|+|++|||||||+|+|++..+...+.||....+. ..+...+....+.+||++|++.+..+  ...+++.+|+
T Consensus         5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~~~   81 (184)
T 1m7b_A            5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNV--RPLSYPDSDA   81 (184)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEECSSCEEEEEEEEECCSGGGTTT--GGGGCTTCSE
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEEECCEEEEEEEEECCCChhhhhh--HHhhcCCCcE
Confidence            45689999999999999999999999888777787776553 34566666778889999999888776  6778899999


Q ss_pred             EEEEEeCCChhhHHHH-HHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCc-------------cccHHHHHHHHHHhCCCC
Q 006490          501 TIFVYDSSDEYSWKRT-KELLVEVARLGEDSGYGVPCLLIASKDDLKPY-------------TMAVQDSARVTQELGIEP  566 (643)
Q Consensus       501 illv~D~s~~~s~~~~-~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~-------------~~~~~~~~~~~~~~~~~~  566 (643)
                      +++|||++++.+|+.+ ..|+..+.....    +.|+++|+||+|+..+             ....++..++++.++..+
T Consensus        82 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~~----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  157 (184)
T 1m7b_A           82 VLICFDISRPETLDSVLKKWKGEIQEFCP----NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAAT  157 (184)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHCT----TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSE
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHHCC----CCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcE
Confidence            9999999999999988 678888877653    7999999999999742             122567888999988556


Q ss_pred             cEEeeec-cC-CHHHHHHHHHHHHh
Q 006490          567 PIPVSMK-SK-DLNNVFSRIIWAAE  589 (643)
Q Consensus       567 ~~~vSa~-~g-~i~~l~~~l~~~~~  589 (643)
                      +++|||+ +| |++++|+.+.+.+.
T Consensus       158 ~~e~Sa~~~~~gi~~l~~~i~~~~l  182 (184)
T 1m7b_A          158 YIECSALQSENSVRDIFHVATLACV  182 (184)
T ss_dssp             EEECBTTTBHHHHHHHHHHHHHHHH
T ss_pred             EEEeeecCCCcCHHHHHHHHHHHHh
Confidence            9999999 68 99999999998765

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.91  E-value=6.7e-24  Score=203.18  Aligned_cols=167  Identities=18%  Similarity=0.188  Sum_probs=130.7

Q ss_pred             CCCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe-eeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCE
Q 006490            7 SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADA   85 (643)
Q Consensus         7 ~~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~   85 (643)
                      ...++.+||+|+|++|||||||+|+|++..+...+.++.+.. .....+....+.+.+|||||++.+...+..+++.+|+
T Consensus        19 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   98 (201)
T 3oes_A           19 MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHG   98 (201)
T ss_dssp             ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCE
T ss_pred             CCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCE
Confidence            345678999999999999999999999999876655544332 2334445667889999999999998899999999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCC
Q 006490           86 VVLTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQ  163 (643)
Q Consensus        86 il~v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  163 (643)
                      +|+|||++++.+++.+. .|...+...  ..++|+++|+||+|+.....+  ..+....++..++.  +++++||++|.|
T Consensus        99 ~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v--~~~~~~~~~~~~~~--~~~~~Sa~~~~~  173 (201)
T 3oes_A           99 YVLVYSVTSLHSFQVIE-SLYQKLHEGHGKTRVPVVLVGNKADLSPEREV--QAVEGKKLAESWGA--TFMESSARENQL  173 (201)
T ss_dssp             EEEEEETTCHHHHHHHH-HHHHHHHC-----CCCEEEEEECTTCGGGCCS--CHHHHHHHHHHHTC--EEEECCTTCHHH
T ss_pred             EEEEEeCCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccCcccccc--CHHHHHHHHHHhCC--eEEEEeCCCCCC
Confidence            99999999999999988 588888654  347899999999999765544  33445667777763  799999999999


Q ss_pred             hhHHHHHHHHHHhCC
Q 006490          164 VPDVFYYAQKAVLHP  178 (643)
Q Consensus       164 i~~l~~~i~~~~~~~  178 (643)
                      |+++|+++.+.+...
T Consensus       174 v~~l~~~l~~~i~~~  188 (201)
T 3oes_A          174 TQGIFTKVIQEIARV  188 (201)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999999987644

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.91  E-value=3.6e-23  Score=195.99  Aligned_cols=165  Identities=18%  Similarity=0.311  Sum_probs=137.8

Q ss_pred             cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhh-hhhccHHhhccC
Q 006490          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK-KILSNKEALASC  498 (643)
Q Consensus       420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~-~~~~~~~~~~~a  498 (643)
                      ....+||+|+|.+|||||||+|+|++..+...+.+|.+.++....+...+....+.+||++|++.+. .+  +..+++.+
T Consensus        17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--~~~~~~~~   94 (189)
T 1z06_A           17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSM--VQHYYRNV   94 (189)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTT--HHHHHTTC
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhh--hHHHhcCC
Confidence            3456999999999999999999999999888887888877877788887666788999999998887 55  67788999


Q ss_pred             CEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC--
Q 006490          499 DVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK--  575 (643)
Q Consensus       499 d~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g--  575 (643)
                      |++++|||++++.+++.+..|+..+.......  +.|+++|+||+|+...+.. .+..+.+++..++. ++++||++|  
T Consensus        95 d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~--~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~~  171 (189)
T 1z06_A           95 HAVVFVYDMTNMASFHSLPAWIEECKQHLLAN--DIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMP-LFETSAKNPND  171 (189)
T ss_dssp             CEEEEEEETTCHHHHHTHHHHHHHHHHHCCCS--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCC-EEECCSSSGGG
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEECccccccceeCHHHHHHHHHHcCCE-EEEEeCCcCCc
Confidence            99999999999999999999999988775333  7999999999999765433 66788889999986 999999996  


Q ss_pred             --CHHHHHHHHHHHHh
Q 006490          576 --DLNNVFSRIIWAAE  589 (643)
Q Consensus       576 --~i~~l~~~l~~~~~  589 (643)
                        |++++|++|.+.+.
T Consensus       172 ~~~i~~l~~~l~~~i~  187 (189)
T 1z06_A          172 NDHVEAIFMTLAHKLK  187 (189)
T ss_dssp             GSCHHHHHHHHC----
T ss_pred             ccCHHHHHHHHHHHHh
Confidence              69999999887653

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.91  E-value=1.4e-23  Score=202.63  Aligned_cols=165  Identities=18%  Similarity=0.351  Sum_probs=138.5

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (643)
                      ...+||+|+|.+|||||||+++|++..+...+.||+++.+. ..+...+....+.+||++|++.+..+  +..+++.+|+
T Consensus         7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d~   83 (212)
T 2j0v_A            7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVAVDGQIVNLGLWDTAGQEDYSRL--RPLSYRGADI   83 (212)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEE-EEEECSSCEEEEEEECCCCCCCCCC----CGGGTTCSE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEE-EEEEECCEEEEEEEEECCCcHHHHHH--HHhhccCCCE
Confidence            45689999999999999999999999888777788876653 44566766678889999999888776  6678999999


Q ss_pred             EEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccc---------cHHHHHHHHHHhCCCCcEEe
Q 006490          501 TIFVYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM---------AVQDSARVTQELGIEPPIPV  570 (643)
Q Consensus       501 illv~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~---------~~~~~~~~~~~~~~~~~~~v  570 (643)
                      +++|||++++.+|+.+. .|+..+.....    +.|+++|+||+|+.....         ..+...++++.++..++++|
T Consensus        84 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  159 (212)
T 2j0v_A           84 FVLAFSLISKASYENVLKKWMPELRRFAP----NVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIEC  159 (212)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHCT----TCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEEC
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhCC----CCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEc
Confidence            99999999999999987 79888887654    799999999999976433         36677888999997569999


Q ss_pred             eeccC-CHHHHHHHHHHHHhCCC
Q 006490          571 SMKSK-DLNNVFSRIIWAAEHPH  592 (643)
Q Consensus       571 Sa~~g-~i~~l~~~l~~~~~~~~  592 (643)
                      ||++| |++++|++|.+.+..+.
T Consensus       160 Sa~~g~gi~~l~~~l~~~~~~~~  182 (212)
T 2j0v_A          160 SSKTQQNVKAVFDTAIKVVLQPP  182 (212)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHCC-
T ss_pred             cCCCCCCHHHHHHHHHHHHhhhh
Confidence            99999 99999999999887554

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.91  E-value=1.6e-23  Score=194.29  Aligned_cols=162  Identities=21%  Similarity=0.312  Sum_probs=131.8

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEE
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il   87 (643)
                      .+.+||+|+|++|||||||+|+|++..+.....++.+.+.  ....+......+.+|||||++.+......+++.+|+++
T Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i   83 (170)
T 1z0j_A            4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI   83 (170)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence            3568999999999999999999999987666444444333  33344556688999999999999888999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhH
Q 006490           88 LTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (643)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  166 (643)
                      +|||++++.+++.+. .|+..+... .++.|+++|+||+|+...+..  ..+....+...++  .+++++||++|.|+++
T Consensus        84 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v--~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~  158 (170)
T 1z0j_A           84 IVYDITKEETFSTLK-NWVRELRQHGPPSIVVAIAGNKCDLTDVREV--MERDAKDYADSIH--AIFVETSAKNAININE  158 (170)
T ss_dssp             EEEETTCHHHHHHHH-HHHHHHHHHSCTTSEEEEEEECTTCGGGCCS--CHHHHHHHHHHTT--CEEEECBTTTTBSHHH
T ss_pred             EEEECcCHHHHHHHH-HHHHHHHHhCCCCCcEEEEEECCcccccccc--CHHHHHHHHHHcC--CEEEEEeCCCCcCHHH
Confidence            999999999999886 588888765 468899999999999765443  2344566666665  3799999999999999


Q ss_pred             HHHHHHHHHh
Q 006490          167 VFYYAQKAVL  176 (643)
Q Consensus       167 l~~~i~~~~~  176 (643)
                      +++++.+.+.
T Consensus       159 l~~~i~~~i~  168 (170)
T 1z0j_A          159 LFIEISRRIP  168 (170)
T ss_dssp             HHHHHHHHCC
T ss_pred             HHHHHHHHHh
Confidence            9999988653

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.91  E-value=1.3e-23  Score=194.26  Aligned_cols=160  Identities=22%  Similarity=0.303  Sum_probs=128.1

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe-eeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (643)
Q Consensus        11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v   89 (643)
                      +.+||+|+|++|||||||+|+|+++.+.....++.+.. .....+....+.+.+|||||++.+...+..+++.+|++++|
T Consensus         2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (167)
T 1kao_A            2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV   81 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence            56899999999999999999999988766654443332 23344555567799999999999988899999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHH
Q 006490           90 YACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV  167 (643)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  167 (643)
                      ||++++.+++.+.. |...+...  ..++|+++|+||+|+...+..  ..+....+...++  .+++++||++|.|++++
T Consensus        82 ~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l  156 (167)
T 1kao_A           82 YSLVNQQSFQDIKP-MRDQIIRVKRYEKVPVILVGNKVDLESEREV--SSSEGRALAEEWG--CPFMETSAKSKTMVDEL  156 (167)
T ss_dssp             EETTCHHHHHHHHH-HHHHHHHHTTTSCCCEEEEEECGGGGGGCCS--CHHHHHHHHHHHT--SCEEEECTTCHHHHHHH
T ss_pred             EeCCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECCcccccccC--CHHHHHHHHHHhC--CCEEEecCCCCcCHHHH
Confidence            99999999998874 66666543  248999999999998755443  2344556666665  36999999999999999


Q ss_pred             HHHHHHHH
Q 006490          168 FYYAQKAV  175 (643)
Q Consensus       168 ~~~i~~~~  175 (643)
                      ++++.+.+
T Consensus       157 ~~~l~~~~  164 (167)
T 1kao_A          157 FAEIVRQM  164 (167)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998765

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.91  E-value=4.5e-23  Score=197.95  Aligned_cols=164  Identities=23%  Similarity=0.395  Sum_probs=139.1

Q ss_pred             cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCC
Q 006490          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (643)
Q Consensus       420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad  499 (643)
                      ....++|+|+|.+|||||||+|+|++..+...+.+|+...+. ..+...+....+.+||++|++.+..+  +..+++.+|
T Consensus        11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~~   87 (206)
T 2bov_A           11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAI--RDNYFRSGE   87 (206)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTCCHHH--HHHHHHHCS
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEE-EEEEECCEEEEEEEEcCCChhhhHHH--HHHHHhhCC
Confidence            345799999999999999999999999887777777776553 44556655667889999999888777  678889999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CH
Q 006490          500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DL  577 (643)
Q Consensus       500 ~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i  577 (643)
                      ++++|||++++.+++.+..|+..+.......  +.|+++|+||+|+...+.. .+....+++.++++ ++++||++| |+
T Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~g~gi  164 (206)
T 2bov_A           88 GFLCVFSITEMESFAATADFREQILRVKEDE--NVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVN-YVETSAKTRANV  164 (206)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHTTCS--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEEECTTTCTTH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEeccCccccccccHHHHHHHHHHhCCe-EEEEeCCCCCCH
Confidence            9999999999999999999999988765433  7999999999999765433 66788888889986 999999999 99


Q ss_pred             HHHHHHHHHHHh
Q 006490          578 NNVFSRIIWAAE  589 (643)
Q Consensus       578 ~~l~~~l~~~~~  589 (643)
                      +++|++|.+.+.
T Consensus       165 ~~l~~~l~~~i~  176 (206)
T 2bov_A          165 DKVFFDLMREIR  176 (206)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999999774

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.91  E-value=1.6e-23  Score=197.54  Aligned_cols=164  Identities=20%  Similarity=0.290  Sum_probs=130.5

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEE
Q 006490            8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV   86 (643)
Q Consensus         8 ~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i   86 (643)
                      ..++.+||+|+|++|||||||+|+|++..+...++++.+... ....+....+.+.+|||||++.+...+..+++.+|++
T Consensus        14 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   93 (187)
T 2a9k_A           14 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF   93 (187)
T ss_dssp             ---CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEE
Confidence            356679999999999999999999999887766555443332 3334445567899999999999999999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHhcC--CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCCh
Q 006490           87 VLTYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQV  164 (643)
Q Consensus        87 l~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  164 (643)
                      ++|||++++.+++.+. .|+..+....  .++|+++|+||+|+...+..  ..+....+.+.++  .+++++||++|.|+
T Consensus        94 i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi  168 (187)
T 2a9k_A           94 LCVFSITEMESFAATA-DFREQILRVKEDENVPFLLVGNKSDLEDKRQV--SVEEAKNRAEQWN--VNYVETSAKTRANV  168 (187)
T ss_dssp             EEEEETTCHHHHHHHH-HHHHHHHHHHCCTTCCEEEEEECGGGGGGCCS--CHHHHHHHHHHTT--CEEEECCTTTCTTH
T ss_pred             EEEEECcCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccccccCcc--CHHHHHHHHHHcC--CeEEEeCCCCCCCH
Confidence            9999999999999887 4877776643  38999999999999765443  2344556666665  37999999999999


Q ss_pred             hHHHHHHHHHHh
Q 006490          165 PDVFYYAQKAVL  176 (643)
Q Consensus       165 ~~l~~~i~~~~~  176 (643)
                      +++|+++.+.+.
T Consensus       169 ~~l~~~l~~~i~  180 (187)
T 2a9k_A          169 DKVFFDLMREIR  180 (187)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988764

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.90  E-value=1.6e-23  Score=201.36  Aligned_cols=163  Identities=22%  Similarity=0.252  Sum_probs=122.3

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCC--CCCCCCCCCCCee-eCCcccCCceeEEEEeCCCCCc-chhhhHHhhccCC
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATES--VPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLE-NKGKLNEELKRAD   84 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~-~~~~~~~~~~~ad   84 (643)
                      ....+||+|+|++|||||||+|+|++..  +...++++...+. ....+++..+.+.+|||+|.+. +......+++.+|
T Consensus        34 ~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~  113 (211)
T 2g3y_A           34 GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD  113 (211)
T ss_dssp             -CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCS
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCC
Confidence            4556999999999999999999999754  4444444333322 3334555567789999999876 4445567788999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCC
Q 006490           85 AVVLTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMI  162 (643)
Q Consensus        85 ~il~v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  162 (643)
                      ++|+|||++++.+++.+.. |...+...  ..++|+|||+||+|+...+.+ .. +..+.++..++  .++++|||++|.
T Consensus       114 ~~ilVydvt~~~sf~~~~~-~~~~l~~~~~~~~~piilVgNK~DL~~~r~v-~~-~e~~~~a~~~~--~~~~e~SAk~g~  188 (211)
T 2g3y_A          114 AYLIVYSITDRASFEKASE-LRIQLRRARQTEDIPIILVGNKSDLVRCREV-SV-SEGRACAVVFD--CKFIETSAAVQH  188 (211)
T ss_dssp             EEEEEEETTCHHHHHHHHH-HHHHHHTSGGGTTSCEEEEEECTTCGGGCCS-CH-HHHHHHHHHHT--CEEEECBTTTTB
T ss_pred             EEEEEEECCCHHHHHHHHH-HHHHHHHHhCCCCCcEEEEEEChHHhcCceE-eH-HHHHHHHHHcC--CEEEEEeCCCCC
Confidence            9999999999999999884 88777653  347999999999999765444 33 33345556665  369999999999


Q ss_pred             ChhHHHHHHHHHHh
Q 006490          163 QVPDVFYYAQKAVL  176 (643)
Q Consensus       163 gi~~l~~~i~~~~~  176 (643)
                      ||+++|+++.+.+.
T Consensus       189 ~v~elf~~l~~~i~  202 (211)
T 2g3y_A          189 NVKELFEGIVRQVR  202 (211)
T ss_dssp             SHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence            99999999988764

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.90  E-value=1.6e-23  Score=199.44  Aligned_cols=164  Identities=20%  Similarity=0.230  Sum_probs=126.6

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCCCCCee-eCCcccCCceeEEEEeCCCCCcchh-hhHHhhccCCE
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVP-EKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKG-KLNEELKRADA   85 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~ad~   85 (643)
                      ....+||+|+|++|||||||+++|++..+. ...+++...+. ....++...+.+.+|||+|++.+.. ....+++.+|+
T Consensus        20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~   99 (195)
T 3cbq_A           20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDA   99 (195)
T ss_dssp             --CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSE
T ss_pred             CCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCE
Confidence            345689999999999999999999865432 22333332322 3334555678899999999987654 66788999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHhcC--CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCC
Q 006490           86 VVLTYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQ  163 (643)
Q Consensus        86 il~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  163 (643)
                      +|+|||++++.+++.+.. |+..+....  .++|+++|+||+|+...+.+ . .+....++..++  .++++|||++|.|
T Consensus       100 ~ilv~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v-~-~~~~~~~a~~~~--~~~~e~Sa~~~~~  174 (195)
T 3cbq_A          100 FLIVFSVTDRRSFSKVPE-TLLRLRAGRPHHDLPVILVGNKSDLARSREV-S-LEEGRHLAGTLS--CKHIETSAALHHN  174 (195)
T ss_dssp             EEEEEETTCHHHHHTHHH-HHHHHHHHSTTSCCCEEEEEECTTCTTTCCS-C-HHHHHHHHHHTT--CEEEEEBTTTTBS
T ss_pred             EEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEeechhccccCCc-C-HHHHHHHHHHhC--CEEEEEcCCCCCC
Confidence            999999999999999884 888887643  48999999999999866554 3 334556776665  3799999999999


Q ss_pred             hhHHHHHHHHHHhC
Q 006490          164 VPDVFYYAQKAVLH  177 (643)
Q Consensus       164 i~~l~~~i~~~~~~  177 (643)
                      |+++|+++.+.+..
T Consensus       175 v~~lf~~l~~~i~~  188 (195)
T 3cbq_A          175 TRELFEGAVRQIRL  188 (195)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999988764

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.90  E-value=1.6e-23  Score=194.20  Aligned_cols=161  Identities=20%  Similarity=0.245  Sum_probs=129.1

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEE
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il   87 (643)
                      ++.+||+|+|++|||||||+|+|+++.+.....++.+.+.  ....+...++.+.+|||||++.+...+..+++.+|++|
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i   83 (170)
T 1r2q_A            4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI   83 (170)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence            4568999999999999999999999887665444443332  33344556788999999999999888999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhH
Q 006490           88 LTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (643)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  166 (643)
                      +|||++++.+++.+. .|+..+... .+++|+++|+||+|+...+.. . .+....+....+  .+++++||++|.|+++
T Consensus        84 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~-~-~~~~~~~~~~~~--~~~~~~Sa~~g~gi~~  158 (170)
T 1r2q_A           84 VVYDITNEESFARAK-NWVKELQRQASPNIVIALSGNKADLANKRAV-D-FQEAQSYADDNS--LLFMETSAKTSMNVNE  158 (170)
T ss_dssp             EEEETTCHHHHHHHH-HHHHHHHHHSCTTCEEEEEEECGGGGGGCCS-C-HHHHHHHHHHTT--CEEEECCTTTCTTHHH
T ss_pred             EEEECCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECccCcccccc-C-HHHHHHHHHHcC--CeEEEEeCCCCCCHHH
Confidence            999999999999987 488777654 468999999999998754443 2 234455666655  3799999999999999


Q ss_pred             HHHHHHHHH
Q 006490          167 VFYYAQKAV  175 (643)
Q Consensus       167 l~~~i~~~~  175 (643)
                      +++++.+.+
T Consensus       159 l~~~i~~~~  167 (170)
T 1r2q_A          159 IFMAIAKKL  167 (170)
T ss_dssp             HHHHHHHTS
T ss_pred             HHHHHHHHH
Confidence            999998764

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.90  E-value=4.4e-23  Score=193.26  Aligned_cols=159  Identities=19%  Similarity=0.263  Sum_probs=127.0

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i  501 (643)
                      ..+||+++|++|||||||+|+|+++.+.. +.||+++.+ ...+..++....+.+||++|++.       ..+++.+|++
T Consensus         6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-------~~~~~~~d~~   76 (178)
T 2iwr_A            6 PELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD-------AKFSGWADAV   76 (178)
T ss_dssp             CEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC-------HHHHHHCSEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEECCEEEEEEEEECCCCch-------hHHHHhCCEE
Confidence            46899999999999999999999998876 667777544 55566676667788999999865       3467889999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCC--Ccc-ccHHHHHHHHHHhCCCCcEEeeeccC-CH
Q 006490          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLK--PYT-MAVQDSARVTQELGIEPPIPVSMKSK-DL  577 (643)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~--~~~-~~~~~~~~~~~~~~~~~~~~vSa~~g-~i  577 (643)
                      ++|||++++.+|+.+..|+..+.........++|+++|+||+|+.  ..+ ...+...++++..+..+++++||++| |+
T Consensus        77 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  156 (178)
T 2iwr_A           77 IFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNV  156 (178)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCH
Confidence            999999999999999998766655433211278999999999994  222 23667778888774334999999999 99


Q ss_pred             HHHHHHHHHHHh
Q 006490          578 NNVFSRIIWAAE  589 (643)
Q Consensus       578 ~~l~~~l~~~~~  589 (643)
                      +++|+.+.+.+.
T Consensus       157 ~~lf~~l~~~~~  168 (178)
T 2iwr_A          157 DRVFQEVAQKVV  168 (178)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998764

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.90  E-value=2.7e-23  Score=199.59  Aligned_cols=164  Identities=21%  Similarity=0.298  Sum_probs=133.1

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEE
Q 006490            8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV   86 (643)
Q Consensus         8 ~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i   86 (643)
                      ..++.+||+|+|++|||||||+|+|++..+...++++.+... ....+....+.+.+|||||++.+...+..+++.+|++
T Consensus        10 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~   89 (206)
T 2bov_A           10 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF   89 (206)
T ss_dssp             -CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEE
Confidence            356679999999999999999999999988776655444432 3334445567899999999999999999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHhcC--CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCCh
Q 006490           87 VLTYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQV  164 (643)
Q Consensus        87 l~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  164 (643)
                      ++|||++++.+++.+. .|+..+....  .++|+++|+||+|+.....+ . .+....+...++  .+++++||++|.||
T Consensus        90 i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~-~-~~~~~~~~~~~~--~~~~~~Sa~~g~gi  164 (206)
T 2bov_A           90 LCVFSITEMESFAATA-DFREQILRVKEDENVPFLLVGNKSDLEDKRQV-S-VEEAKNRAEQWN--VNYVETSAKTRANV  164 (206)
T ss_dssp             EEEEETTCHHHHHHHH-HHHHHHHHHTTCSCCCEEEEEECTTCGGGCCS-C-HHHHHHHHHHHT--CEEEEECTTTCTTH
T ss_pred             EEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEeccCccccccc-c-HHHHHHHHHHhC--CeEEEEeCCCCCCH
Confidence            9999999999999987 5888887654  38999999999999765444 2 334556666665  37999999999999


Q ss_pred             hHHHHHHHHHHh
Q 006490          165 PDVFYYAQKAVL  176 (643)
Q Consensus       165 ~~l~~~i~~~~~  176 (643)
                      +++|+++.+.+.
T Consensus       165 ~~l~~~l~~~i~  176 (206)
T 2bov_A          165 DKVFFDLMREIR  176 (206)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998765

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.90  E-value=5e-23  Score=197.87  Aligned_cols=167  Identities=17%  Similarity=0.276  Sum_probs=139.0

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (643)
                      ...+||+|+|.+|||||||+|+|++..+...+.+|++.++....+...+....+.+||++|++.+..+  +..+++.+|+
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~d~   83 (207)
T 1vg8_A            6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSL--GVAFYRGADC   83 (207)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCS--CCGGGTTCSE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHh--HHHHHhCCcE
Confidence            45689999999999999999999999988888788877777778888866778899999999888776  6778899999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhcCCC-CCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC-CHH
Q 006490          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDS-GYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLN  578 (643)
Q Consensus       501 illv~D~s~~~s~~~~~~~~~~i~~~~~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g-~i~  578 (643)
                      +|+|+|++++.+++.+..|+..+....... ..+.|+++|+||+|+.......+....++......+++++||++| |++
T Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  163 (207)
T 1vg8_A           84 CVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVE  163 (207)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCceEEEEeCCCCCCHH
Confidence            999999999999999999988887654210 017899999999999854444667777777444335999999999 999


Q ss_pred             HHHHHHHHHHh
Q 006490          579 NVFSRIIWAAE  589 (643)
Q Consensus       579 ~l~~~l~~~~~  589 (643)
                      ++|++|.+.+.
T Consensus       164 ~l~~~l~~~~~  174 (207)
T 1vg8_A          164 QAFQTIARNAL  174 (207)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999764

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.90  E-value=9.2e-24  Score=200.66  Aligned_cols=164  Identities=19%  Similarity=0.316  Sum_probs=125.2

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEE
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV   86 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i   86 (643)
                      ....+||+|+|++|||||||+|+|++..+.....++.+...  ....+....+.+.+|||||++.+...+..+++.+|++
T Consensus        23 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~i  102 (192)
T 2il1_A           23 ADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGI  102 (192)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEE
T ss_pred             cCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence            34568999999999999999999999887655444333322  2233444567899999999999988899999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChh
Q 006490           87 VLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP  165 (643)
Q Consensus        87 l~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  165 (643)
                      |+|||++++.+++.+. .|+..++... .++|+++|+||+|+...+.+  ..+..+.+.+.+.. .++++|||++|.||+
T Consensus       103 ilV~D~~~~~s~~~~~-~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~-~~~~~~SA~~g~gi~  178 (192)
T 2il1_A          103 ILVYDITKKETFDDLP-KWMKMIDKYASEDAELLLVGNKLDCETDREI--TRQQGEKFAQQITG-MRFCEASAKDNFNVD  178 (192)
T ss_dssp             EEEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECGGGGGGCCS--CHHHHHHHHHTSTT-CEEEECBTTTTBSHH
T ss_pred             EEEEECcCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECccccccccc--CHHHHHHHHHhcCC-CeEEEEeCCCCCCHH
Confidence            9999999999999987 5888887654 47999999999999765444  23345666666533 379999999999999


Q ss_pred             HHHHHHHHHHh
Q 006490          166 DVFYYAQKAVL  176 (643)
Q Consensus       166 ~l~~~i~~~~~  176 (643)
                      ++|+++.+.+.
T Consensus       179 ~l~~~l~~~i~  189 (192)
T 2il1_A          179 EIFLKLVDDIL  189 (192)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988764

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.90  E-value=1.6e-23  Score=194.04  Aligned_cols=162  Identities=20%  Similarity=0.265  Sum_probs=130.3

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEE
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il   87 (643)
                      ...+||+|+|++|||||||+|+|++..+...+.++.+...  ....+....+.+.+|||||++.+...+..+++.+|+++
T Consensus         3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   82 (168)
T 1z2a_A            3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV   82 (168)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence            3568999999999999999999999887665444333222  22334455678999999999988888999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHH
Q 006490           88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV  167 (643)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  167 (643)
                      +|||++++.+++.+.. |...+.....+.|+++|+||+|+...+..  ..+..+.+.+.++  .+++++||++|.|++++
T Consensus        83 ~v~d~~~~~s~~~~~~-~~~~i~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~l  157 (168)
T 1z2a_A           83 LVFSTTDRESFEAISS-WREKVVAEVGDIPTALVQNKIDLLDDSCI--KNEEAEGLAKRLK--LRFYRTSVKEDLNVSEV  157 (168)
T ss_dssp             EEEETTCHHHHHTHHH-HHHHHHHHHCSCCEEEEEECGGGGGGCSS--CHHHHHHHHHHHT--CEEEECBTTTTBSSHHH
T ss_pred             EEEECcCHHHHHHHHH-HHHHHHHhCCCCCEEEEEECcccCccccc--CHHHHHHHHHHcC--CeEEEEecCCCCCHHHH
Confidence            9999999999998874 88888765568999999999998764443  2344566777766  37999999999999999


Q ss_pred             HHHHHHHHh
Q 006490          168 FYYAQKAVL  176 (643)
Q Consensus       168 ~~~i~~~~~  176 (643)
                      ++++.+.+.
T Consensus       158 ~~~l~~~~~  166 (168)
T 1z2a_A          158 FKYLAEKHL  166 (168)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999988764

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.90  E-value=1.8e-23  Score=193.91  Aligned_cols=160  Identities=20%  Similarity=0.271  Sum_probs=128.2

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEE
Q 006490           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (643)
Q Consensus        11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (643)
                      +.+||+++|++|||||||+|+|++..+.....++.+.+.  ....+....+.+.+|||||++.+...+..+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1ek0_A            2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence            468999999999999999999999887665444444332  333445567789999999999998899999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCCCC---CccchhhhhhhHHHHhhcccceEEEeCcccCCCh
Q 006490           89 TYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGD---HNATSLEEVMGPIMQQFREIETCVECSATTMIQV  164 (643)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  164 (643)
                      |||++++.+++.+.. |+..+... ..+.|+++|+||+|+...   ..+  ..+....+...++  .+++++||++|.|+
T Consensus        82 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi  156 (170)
T 1ek0_A           82 VYDVTKPQSFIKARH-WVKELHEQASKDIIIALVGNKIDXLQEGGERKV--AREEGEKLAEEKG--LLFFETSAKTGENV  156 (170)
T ss_dssp             EEETTCHHHHHHHHH-HHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCS--CHHHHHHHHHHHT--CEEEECCTTTCTTH
T ss_pred             EEecCChHHHHHHHH-HHHHHHHhcCCCCcEEEEEECCCccccccccCC--CHHHHHHHHHHcC--CEEEEEeCCCCCCH
Confidence            999999999999884 88777654 368999999999998754   222  3344456666665  37999999999999


Q ss_pred             hHHHHHHHHHH
Q 006490          165 PDVFYYAQKAV  175 (643)
Q Consensus       165 ~~l~~~i~~~~  175 (643)
                      +++|+++.+.+
T Consensus       157 ~~l~~~l~~~i  167 (170)
T 1ek0_A          157 NDVFLGIGEKI  167 (170)
T ss_dssp             HHHHHHHHTTS
T ss_pred             HHHHHHHHHHH
Confidence            99999987654

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.90  E-value=5.1e-23  Score=193.21  Aligned_cols=167  Identities=18%  Similarity=0.335  Sum_probs=127.0

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcC-CCcEEEEEEecCCchhhhhhhccHHhhccCC
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQP-GGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~-g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad  499 (643)
                      +..+||+|+|.+|||||||+|+|++..+...+.+|++.++....+..+ +....+.+||++|++.+..+  +..+++.+|
T Consensus         6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~d   83 (182)
T 1ky3_A            6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSL--GVAFYRGAD   83 (182)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC------------CCSTTCC
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhh--hHHHhhcCC
Confidence            457899999999999999999999998887777888777777777776 34567889999999888776  677889999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhcCC-CCCCCcEEEEEeCCCCCCcc--ccHHHHHHHHHHhCCCCcEEeeeccC-
Q 006490          500 VTIFVYDSSDEYSWKRTKELLVEVARLGED-SGYGVPCLLIASKDDLKPYT--MAVQDSARVTQELGIEPPIPVSMKSK-  575 (643)
Q Consensus       500 ~illv~D~s~~~s~~~~~~~~~~i~~~~~~-~~~~~pvilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~vSa~~g-  575 (643)
                      ++++|||++++.+++.+..|+..+...... ...+.|+++|+||+|+....  ...+...++++..+..+++++||++| 
T Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~  163 (182)
T 1ky3_A           84 CCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAI  163 (182)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTB
T ss_pred             EEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCC
Confidence            999999999999999999999888765421 01178999999999996432  23567777887555445999999999 


Q ss_pred             CHHHHHHHHHHHHh
Q 006490          576 DLNNVFSRIIWAAE  589 (643)
Q Consensus       576 ~i~~l~~~l~~~~~  589 (643)
                      |++++|++|.+.+.
T Consensus       164 gi~~l~~~l~~~~~  177 (182)
T 1ky3_A          164 NVDTAFEEIARSAL  177 (182)
T ss_dssp             SHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence            99999999998764

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.90  E-value=3.1e-23  Score=197.46  Aligned_cols=163  Identities=18%  Similarity=0.249  Sum_probs=132.5

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEE
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il   87 (643)
                      ...+||+|+|++|||||||+|+|++..+.....++.+...  ....+....+.+.+|||||++.+...+..+++.+|++|
T Consensus        14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   93 (196)
T 3tkl_A           14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   93 (196)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEE
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEE
Confidence            4568999999999999999999999887666444333333  22334445578999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhH
Q 006490           88 LTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (643)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  166 (643)
                      +|||++++.+++.+. .|+..+.... .++|+++|+||+|+...+..  ..+....++..++  .+++++||++|.|+++
T Consensus        94 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~g~gv~~  168 (196)
T 3tkl_A           94 VVYDVTDQESFNNVK-QWLQEIDRYASENVNKLLVGNKCDLTTKKVV--DYTTAKEFADSLG--IPFLETSAKNATNVEQ  168 (196)
T ss_dssp             EEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCTTTCCS--CHHHHHHHHHHTT--CCEEEECTTTCTTHHH
T ss_pred             EEEECcCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECccccccccc--CHHHHHHHHHHcC--CcEEEEeCCCCCCHHH
Confidence            999999999999987 4888886653 47899999999999876554  3344566777776  3799999999999999


Q ss_pred             HHHHHHHHHhC
Q 006490          167 VFYYAQKAVLH  177 (643)
Q Consensus       167 l~~~i~~~~~~  177 (643)
                      +|+++.+.+..
T Consensus       169 l~~~l~~~i~~  179 (196)
T 3tkl_A          169 SFMTMAAEIKK  179 (196)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988753

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.90  E-value=1.6e-23  Score=194.37  Aligned_cols=162  Identities=17%  Similarity=0.262  Sum_probs=124.3

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEE
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il   87 (643)
                      ...+||+|+|++|||||||+|+|++..+.....++.+...  ....+....+.+.+|||||++.+...+..+++.+|+++
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i   83 (170)
T 1z08_A            4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI   83 (170)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEE
Confidence            4568999999999999999999999887655443333322  33344556778999999999988888888999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhH
Q 006490           88 LTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (643)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  166 (643)
                      +|||++++.+++.+. .|+..+.... .++|+++|+||+|+...+.+ . .+....+++.++  .+++++||++|.|+++
T Consensus        84 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-~-~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~  158 (170)
T 1z08_A           84 LVYDITDEDSFQKVK-NWVKELRKMLGNEICLCIVGNKIDLEKERHV-S-IQEAESYAESVG--AKHYHTSAKQNKGIEE  158 (170)
T ss_dssp             EEEETTCHHHHHHHH-HHHHHHHHHHGGGSEEEEEEECGGGGGGCCS-C-HHHHHHHHHHTT--CEEEEEBTTTTBSHHH
T ss_pred             EEEECcCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEECccccccccc-C-HHHHHHHHHHcC--CeEEEecCCCCCCHHH
Confidence            999999999999887 5888886543 47999999999999765444 2 344566777766  3799999999999999


Q ss_pred             HHHHHHHHHh
Q 006490          167 VFYYAQKAVL  176 (643)
Q Consensus       167 l~~~i~~~~~  176 (643)
                      +|+++.+.+.
T Consensus       159 l~~~l~~~~~  168 (170)
T 1z08_A          159 LFLDLCKRMI  168 (170)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999988764

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.90  E-value=2.6e-23  Score=200.07  Aligned_cols=167  Identities=23%  Similarity=0.366  Sum_probs=129.6

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEE
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (643)
                      +..+||+|+|++|||||||+|+|++..+...+.++.+... ....+....+.+.+|||||++.+...+..+++.+|++|+
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~  102 (207)
T 2fv8_A           23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM  102 (207)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEE
T ss_pred             ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEE
Confidence            3457999999999999999999999887666544433332 333444556789999999999998888899999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCc-----------cchhhhhhhHHHHhhcccceEEEeC
Q 006490           89 TYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----------ATSLEEVMGPIMQQFREIETCVECS  157 (643)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~S  157 (643)
                      |||++++.+++.+...|...+....+++|+++|+||+|+.....           . ...+....++..++. .++++||
T Consensus       103 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~-~~~~~~S  180 (207)
T 2fv8_A          103 CFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEP-VRTDDGRAMAVRIQA-YDYLECS  180 (207)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCC-CCHHHHHHHHHHTTC-SEEEECC
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCC-CCHHHHHHHHHhcCC-CEEEEee
Confidence            99999999999986679999988777999999999999875411           1 122334455555552 2699999


Q ss_pred             cccCCChhHHHHHHHHHHhCC
Q 006490          158 ATTMIQVPDVFYYAQKAVLHP  178 (643)
Q Consensus       158 a~~~~gi~~l~~~i~~~~~~~  178 (643)
                      |++|.||+++|+++.+.+..+
T Consensus       181 A~~g~gi~el~~~l~~~i~~~  201 (207)
T 2fv8_A          181 AKTKEGVREVFETATRAALQK  201 (207)
T ss_dssp             TTTCTTHHHHHHHHHHHHHSC
T ss_pred             CCCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999988754

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.90  E-value=1.8e-23  Score=198.59  Aligned_cols=163  Identities=19%  Similarity=0.261  Sum_probs=132.5

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEE
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV   86 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i   86 (643)
                      ..+.+||+|+|++|||||||+|+|++..+.....++.+.+.  ....+....+.+.+|||||.+.+...+..+++.+|++
T Consensus        20 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i   99 (192)
T 2fg5_A           20 AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAA   99 (192)
T ss_dssp             -CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred             cCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEE
Confidence            35579999999999999999999999987655444444433  3334455678999999999999989999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChh
Q 006490           87 VLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP  165 (643)
Q Consensus        87 l~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  165 (643)
                      |+|||++++.+++.+. .|+..+.... .++|+++|+||+|+...+.+  ..+....+++.++  .++++|||++|.|++
T Consensus       100 ilV~d~~~~~s~~~~~-~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~  174 (192)
T 2fg5_A          100 VIVYDITKQDSFYTLK-KWVKELKEHGPENIVMAIAGNKCDLSDIREV--PLKDAKEYAESIG--AIVVETSAKNAINIE  174 (192)
T ss_dssp             EEEEETTCTHHHHHHH-HHHHHHHHHSCTTCEEEEEEECGGGGGGCCS--CHHHHHHHHHTTT--CEEEECBTTTTBSHH
T ss_pred             EEEEeCCCHHHHHHHH-HHHHHHHHhCCCCCcEEEEEECccccccccc--CHHHHHHHHHHcC--CEEEEEeCCCCcCHH
Confidence            9999999999999987 5888887654 47999999999999754433  2344566777666  379999999999999


Q ss_pred             HHHHHHHHHHh
Q 006490          166 DVFYYAQKAVL  176 (643)
Q Consensus       166 ~l~~~i~~~~~  176 (643)
                      ++++++.+.+.
T Consensus       175 ~l~~~l~~~i~  185 (192)
T 2fg5_A          175 ELFQGISRQIP  185 (192)
T ss_dssp             HHHHHHHHTCC
T ss_pred             HHHHHHHHHHH
Confidence            99999988654

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.90  E-value=2.5e-23  Score=197.77  Aligned_cols=163  Identities=18%  Similarity=0.196  Sum_probs=130.6

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEE
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV   86 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i   86 (643)
                      ....+||+|+|++|||||||+|+|++..+.....++.+...  ....+....+.+.+|||||++.+...+..+++.+|++
T Consensus        22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v  101 (193)
T 2oil_A           22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGA  101 (193)
T ss_dssp             CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence            44568999999999999999999999887665444333322  3334455678899999999999988999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChh
Q 006490           87 VLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP  165 (643)
Q Consensus        87 l~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  165 (643)
                      |+|||++++.+++.+. .|+..+.... .++|+++|+||+|+...+.+  ..+....+....+  .+++++||++|.|++
T Consensus       102 i~v~D~~~~~s~~~~~-~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~  176 (193)
T 2oil_A          102 LLVFDLTKHQTYAVVE-RWLKELYDHAEATIVVMLVGNKSDLSQAREV--PTEEARMFAENNG--LLFLETSALDSTNVE  176 (193)
T ss_dssp             EEEEETTCHHHHHTHH-HHHHHHHTTSCTTCEEEEEEECGGGGGGCCS--CHHHHHHHHHHTT--CEEEEECTTTCTTHH
T ss_pred             EEEEECCCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEECCCccccccc--CHHHHHHHHHHcC--CEEEEEeCCCCCCHH
Confidence            9999999999998887 4888886653 58999999999999765443  2334455666655  379999999999999


Q ss_pred             HHHHHHHHHHh
Q 006490          166 DVFYYAQKAVL  176 (643)
Q Consensus       166 ~l~~~i~~~~~  176 (643)
                      ++|+++.+.+.
T Consensus       177 ~l~~~l~~~i~  187 (193)
T 2oil_A          177 LAFETVLKEIF  187 (193)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988754

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.90  E-value=4.6e-23  Score=193.54  Aligned_cols=164  Identities=21%  Similarity=0.261  Sum_probs=130.7

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEE
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV   86 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i   86 (643)
                      ....+||+|+|++|||||||+|+|++..+.....++.+...  ....+....+.+.+|||||++.+...+..+++.+|++
T Consensus         9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   88 (181)
T 2efe_B            9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA   88 (181)
T ss_dssp             -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEE
T ss_pred             CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEE
Confidence            45679999999999999999999999887665433333222  2333445578899999999999988999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChh
Q 006490           87 VLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP  165 (643)
Q Consensus        87 l~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  165 (643)
                      |+|||++++.+++.+. .|+..+.... +++|+++|+||+|+...+..  ..+....++..++  .+++++||++|.|++
T Consensus        89 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~g~gi~  163 (181)
T 2efe_B           89 IIVFDVTNQASFERAK-KWVQELQAQGNPNMVMALAGNKSDLLDARKV--TAEDAQTYAQENG--LFFMETSAKTATNVK  163 (181)
T ss_dssp             EEEEETTCHHHHHHHH-HHHHHHHHHSCTTCEEEEEEECTTCTTTCCS--CHHHHHHHHHHTT--CEEEECCSSSCTTHH
T ss_pred             EEEEECCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECCcccccccC--CHHHHHHHHHHcC--CEEEEEECCCCCCHH
Confidence            9999999999999887 5888887653 58999999999999765544  2344566666665  369999999999999


Q ss_pred             HHHHHHHHHHhC
Q 006490          166 DVFYYAQKAVLH  177 (643)
Q Consensus       166 ~l~~~i~~~~~~  177 (643)
                      ++++++.+.+..
T Consensus       164 ~l~~~l~~~~~~  175 (181)
T 2efe_B          164 EIFYEIARRLPR  175 (181)
T ss_dssp             HHHHHHHHTCC-
T ss_pred             HHHHHHHHHHHh
Confidence            999999887643

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.90  E-value=3.9e-23  Score=198.05  Aligned_cols=163  Identities=15%  Similarity=0.199  Sum_probs=132.3

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEE
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV   86 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i   86 (643)
                      ....+||+|+|++|||||||+|+|++..+.....++.+.+.  ....+....+.+.+|||||++.+...+..+++.+|++
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   84 (203)
T 1zbd_A            5 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGF   84 (203)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEE
T ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEE
Confidence            34568999999999999999999999987665444443332  2334445578899999999999988889999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChh
Q 006490           87 VLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP  165 (643)
Q Consensus        87 l~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  165 (643)
                      |+|||++++.+++.+. .|+..+.... .++|+++|+||+|+......  ..+....++..++  .+++++||++|.||+
T Consensus        85 i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~  159 (203)
T 1zbd_A           85 ILMYDITNEESFNAVQ-DWSTQIKTYSWDNAQVLLVGNKCDMEDERVV--SSERGRQLADHLG--FEFFEASAKDNINVK  159 (203)
T ss_dssp             EEEEETTCHHHHHHHH-HHHHHHHHHSCSSCEEEEEEECTTCTTSCCS--CHHHHHHHHHHHT--CEEEECBTTTTBSSH
T ss_pred             EEEEECcCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECcccCccccc--CHHHHHHHHHHCC--CeEEEEECCCCCCHH
Confidence            9999999999999887 4888887654 58999999999999765544  3344566777776  379999999999999


Q ss_pred             HHHHHHHHHHh
Q 006490          166 DVFYYAQKAVL  176 (643)
Q Consensus       166 ~l~~~i~~~~~  176 (643)
                      ++|+++.+.+.
T Consensus       160 ~l~~~l~~~i~  170 (203)
T 1zbd_A          160 QTFERLVDVIC  170 (203)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988764

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.90  E-value=9.1e-24  Score=197.78  Aligned_cols=165  Identities=20%  Similarity=0.193  Sum_probs=128.0

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccC-CceeEEEEeCCCCCcchhhhHHhhccCCE
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYP-DRVPVTIIDTSSSLENKGKLNEELKRADA   85 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~   85 (643)
                      ..+.+||+|+|++|||||||+|+|++..+...+.++.+...  ....+.. ..+.+.+|||||++.+...+..+++.+|+
T Consensus         3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   82 (178)
T 2hxs_A            3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG   82 (178)
T ss_dssp             CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence            34679999999999999999999999887544333332211  2222322 24889999999999998999999999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHhcC---CCCc-EEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccC
Q 006490           86 VVLTYACNQQSTLSRLSSYWLPELRRLE---IKVP-IIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM  161 (643)
Q Consensus        86 il~v~d~~~~~s~~~~~~~~~~~l~~~~---~~~p-vilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  161 (643)
                      +|+|||++++.+++.+. .|+..+....   .+.| +++|+||+|+...+..  ..+....+++.++  .+++++||++|
T Consensus        83 ~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~  157 (178)
T 2hxs_A           83 VLLVYDITNYQSFENLE-DWYTVVKKVSEESETQPLVALVGNKIDLEHMRTI--KPEKHLRFCQENG--FSSHFVSAKTG  157 (178)
T ss_dssp             EEEEEETTCHHHHHTHH-HHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSS--CHHHHHHHHHHHT--CEEEEECTTTC
T ss_pred             EEEEEECCCHHHHHHHH-HHHHHHHHHhcccCCCCeEEEEEEcccccccccc--CHHHHHHHHHHcC--CcEEEEeCCCC
Confidence            99999999999998887 5888886632   2455 8999999999764443  2344566666665  37999999999


Q ss_pred             CChhHHHHHHHHHHhCC
Q 006490          162 IQVPDVFYYAQKAVLHP  178 (643)
Q Consensus       162 ~gi~~l~~~i~~~~~~~  178 (643)
                      .||+++|+++.+.+...
T Consensus       158 ~gi~~l~~~l~~~~~~~  174 (178)
T 2hxs_A          158 DSVFLCFQKVAAEILGI  174 (178)
T ss_dssp             TTHHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHhh
Confidence            99999999999887643

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.90  E-value=3.2e-23  Score=198.37  Aligned_cols=164  Identities=18%  Similarity=0.343  Sum_probs=128.6

Q ss_pred             ccCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccC
Q 006490          419 TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASC  498 (643)
Q Consensus       419 ~~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~a  498 (643)
                      .....+||+|+|.+|||||||+++|++..+...+.+|+.+.+. ..+...+....+.+||++|++.+..+  +..+++.+
T Consensus        16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~   92 (201)
T 2q3h_A           16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFS-AVVSVDGRPVRLQLCDTAGQDEFDKL--RPLCYTNT   92 (201)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEE-EEEEETTEEEEEEEEECCCSTTCSSS--GGGGGTTC
T ss_pred             CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeE-EEEEECCEEEEEEEEECCCCHHHHHH--hHhhcCCC
Confidence            3456799999999999999999999999887777778776553 44555655567789999999888777  66789999


Q ss_pred             CEEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCc-------------cccHHHHHHHHHHhCC
Q 006490          499 DVTIFVYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPY-------------TMAVQDSARVTQELGI  564 (643)
Q Consensus       499 d~illv~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~-------------~~~~~~~~~~~~~~~~  564 (643)
                      |++++|||++++.+|+.+. .|+..+.....    +.|+++|+||+|+...             ....+....+++.+++
T Consensus        93 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  168 (201)
T 2q3h_A           93 DIFLLCFSVVSPSSFQNVSEKWVPEIRCHCP----KAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKA  168 (201)
T ss_dssp             SEEEEEEETTCHHHHHHHHHTHHHHHHHHCS----SSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTC
T ss_pred             cEEEEEEECCCHHHHHHHHHHHHHHHHHhCC----CCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCC
Confidence            9999999999999999987 69888887654    7999999999999752             1235678888999998


Q ss_pred             CCcEEeeeccC-CHHHHHHHHHHHHh
Q 006490          565 EPPIPVSMKSK-DLNNVFSRIIWAAE  589 (643)
Q Consensus       565 ~~~~~vSa~~g-~i~~l~~~l~~~~~  589 (643)
                      .++++|||++| |++++|++|.+.+.
T Consensus       169 ~~~~~~Sa~~g~gi~~l~~~l~~~~~  194 (201)
T 2q3h_A          169 ASYIECSALTQKNLKEVFDAAIVAGI  194 (201)
T ss_dssp             SEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             cEEEEEecCCCCCHHHHHHHHHHHHh
Confidence            55999999999 99999999999875

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.90  E-value=1e-22  Score=187.75  Aligned_cols=161  Identities=19%  Similarity=0.347  Sum_probs=135.9

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEE
Q 006490          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~il  502 (643)
                      .+||+++|.+|||||||+|+|++..+...+.+|+...+ ...+...+....+.+||++|++.+..+  ...++..+|+++
T Consensus         3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~--~~~~~~~~~~~i   79 (166)
T 2ce2_X            3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAM--RDQYMRTGEGFL   79 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHH--HHHHHHHCSEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHH--HHHhhccCCEEE
Confidence            47999999999999999999999988777767766544 344555655667889999999877776  677889999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC-CHHHHH
Q 006490          503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNVF  581 (643)
Q Consensus       503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l~  581 (643)
                      +|+|++++.+++.+..|+..+.......  +.|+++|+||+|+.......+...++++.++++ ++++||++| |+++++
T Consensus        80 ~v~d~~~~~~~~~~~~~~~~i~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~l~  156 (166)
T 2ce2_X           80 CVFAINNTKSFEDIHQYREQIKRVKDSD--DVPMVLVGNKSDLAARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF  156 (166)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHTCS--CCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCC-EEEECTTTCTTHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCC--CCcEEEEEEchhhhhcccCHHHHHHHHHHcCCe-EEEecCCCCCCHHHHH
Confidence            9999999999999999998887765433  799999999999987555577888899999986 999999999 999999


Q ss_pred             HHHHHHHh
Q 006490          582 SRIIWAAE  589 (643)
Q Consensus       582 ~~l~~~~~  589 (643)
                      ++|.+.+.
T Consensus       157 ~~l~~~~~  164 (166)
T 2ce2_X          157 YTLVREIR  164 (166)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998764

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.90  E-value=1.5e-23  Score=194.56  Aligned_cols=160  Identities=19%  Similarity=0.225  Sum_probs=117.6

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCCCCCeeeCCcccCCceeEEEEeCCCCCcchh-hhHHhhccCCEEEE
Q 006490           12 GVRVVVVGDRGTGKSSLIAAAATESVPEK--VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKG-KLNEELKRADAVVL   88 (643)
Q Consensus        12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~ad~il~   88 (643)
                      .+||+|+|++|||||||+|+|++..+...  .+++.........++...+.+.+|||||++.+.. ....+++.+|++++
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~   81 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI   81 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence            47999999999999999999997765433  2222222224444556678899999999988765 56678899999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHhcCC--CCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhH
Q 006490           89 TYACNQQSTLSRLSSYWLPELRRLEI--KVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (643)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~~~~--~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  166 (643)
                      |||++++.+++.+.. |+..+.....  ++|+++|+||+|+...+.+  ..+....+++.++  .+++++||++|.|+++
T Consensus        82 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~  156 (169)
T 3q85_A           82 VFSVTDRRSFSKVPE-TLLRLRAGRPHHDLPVILVGNKSDLARSREV--SLEEGRHLAGTLS--CKHIETSAALHHNTRE  156 (169)
T ss_dssp             EEETTCHHHHHTHHH-HHHHHHHHSTTSCCCEEEEEECTTCGGGCCS--CHHHHHHHHHHTT--CEEEECBTTTTBSHHH
T ss_pred             EEECCChHHHHHHHH-HHHHHHhcccCCCCCEEEEeeCcchhhcccC--CHHHHHHHHHHcC--CcEEEecCccCCCHHH
Confidence            999999999999984 7777766543  8999999999999765544  3344566777776  3799999999999999


Q ss_pred             HHHHHHHHHh
Q 006490          167 VFYYAQKAVL  176 (643)
Q Consensus       167 l~~~i~~~~~  176 (643)
                      +|+++.+.+.
T Consensus       157 l~~~l~~~i~  166 (169)
T 3q85_A          157 LFEGAVRQIR  166 (169)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988764

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.90  E-value=5.5e-23  Score=195.27  Aligned_cols=163  Identities=21%  Similarity=0.336  Sum_probs=125.4

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCcEEEEEEecCCchhh-hhhhccHHhhccCC
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV-KKILSNKEALASCD  499 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~-~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~-~~~~~~~~~~~~ad  499 (643)
                      ..+||+|+|++|||||||+|+|++........ ++++.++....+.++|....+.+||++|.+.. ..+  ...+++.+|
T Consensus         5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~--~~~~~~~~~   82 (192)
T 2cjw_A            5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWL--HDHCMQVGD   82 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTT--GGGHHHHCS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhH--HHhhcccCC
Confidence            45899999999999999999999754332222 34555555566777766667788999998763 334  456778999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CH
Q 006490          500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DL  577 (643)
Q Consensus       500 ~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i  577 (643)
                      ++++|||++++.||+.+..|...+.......  +.|+++|+||+|+...+.. .+....++...++. +++|||++| |+
T Consensus        83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~--~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~-~~e~SA~~g~~v  159 (192)
T 2cjw_A           83 AYLIVYSITDRASFEKASELRIQLRRARQTE--DIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXK-FIETSAAVQHNV  159 (192)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHTTTS--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCE-EEECBTTTTBSH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhhCCC--CCeEEEEEechhhhccccccHHHHHHHHHHhCCc-eEEeccccCCCH
Confidence            9999999999999999999988777653322  7899999999999764433 45566777778875 999999999 99


Q ss_pred             HHHHHHHHHHHh
Q 006490          578 NNVFSRIIWAAE  589 (643)
Q Consensus       578 ~~l~~~l~~~~~  589 (643)
                      +++|+.+.+.+.
T Consensus       160 ~~lf~~l~~~~~  171 (192)
T 2cjw_A          160 KELFEGIVRQVR  171 (192)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999999774

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.90  E-value=5.9e-23  Score=193.72  Aligned_cols=163  Identities=23%  Similarity=0.397  Sum_probs=137.4

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (643)
                      ...+||+|+|.+|||||||+|+|++..+...+.+|+...+. ..+...+....+.+||++|++.+..+  +..+++.+|+
T Consensus        16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~d~   92 (187)
T 2a9k_A           16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAI--RDNYFRSGEG   92 (187)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTCCHHH--HHHHHHHCSE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEE-EEEEECCEEEEEEEEECCCCcccHHH--HHHHhccCCE
Confidence            35689999999999999999999999887777777776553 34455655567889999999888777  6788999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHH
Q 006490          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLN  578 (643)
Q Consensus       501 illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~  578 (643)
                      +++|||++++.+++.+..|+..+.......  ++|+++|+||+|+...+.. .+....+++.++++ ++++||++| |++
T Consensus        93 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~  169 (187)
T 2a9k_A           93 FLCVFSITEMESFAATADFREQILRVKEDE--NVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVN-YVETSAKTRANVD  169 (187)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHCCT--TCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEECCTTTCTTHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEECccccccCccCHHHHHHHHHHcCCe-EEEeCCCCCCCHH
Confidence            999999999999999999999888766543  7999999999999765433 66788888889986 999999999 999


Q ss_pred             HHHHHHHHHHh
Q 006490          579 NVFSRIIWAAE  589 (643)
Q Consensus       579 ~l~~~l~~~~~  589 (643)
                      ++|++|.+.+.
T Consensus       170 ~l~~~l~~~i~  180 (187)
T 2a9k_A          170 KVFFDLMREIR  180 (187)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999775

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.90  E-value=3.9e-23  Score=196.27  Aligned_cols=168  Identities=15%  Similarity=0.188  Sum_probs=130.3

Q ss_pred             CCCCCCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeee---CCcccCC---------ceeEEEEeCCCCCc
Q 006490            4 GSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRL---PPDFYPD---------RVPVTIIDTSSSLE   71 (643)
Q Consensus         4 ~~~~~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~---~~~~~~~---------~~~~~i~Dt~G~~~   71 (643)
                      |........+||+|+|++|||||||+|+|++..+.....++.+....   ...+...         .+.+.+|||||++.
T Consensus         3 m~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   82 (195)
T 3bc1_A            3 MSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLER   82 (195)
T ss_dssp             ---CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGG
T ss_pred             CcccccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHH
Confidence            33344566799999999999999999999998876554333332211   1222222         57899999999999


Q ss_pred             chhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcC--CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcc
Q 006490           72 NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE  149 (643)
Q Consensus        72 ~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~  149 (643)
                      +...+..+++.+|++|+|||++++.+++.+. .|+..+....  .++|+++|+||+|+...+..  ..+....+...++ 
T Consensus        83 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~-  158 (195)
T 3bc1_A           83 FRSLTTAFFRDAMGFLLLFDLTNEQSFLNVR-NWISQLQMHAYSENPDIVLCGNKSDLEDQRAV--KEEEARELAEKYG-  158 (195)
T ss_dssp             GHHHHHHTTTTCSEEEEEEETTCHHHHHTHH-HHHHHHHHHSSSSSCCEEEEEECTTCGGGCCS--CHHHHHHHHHHHT-
T ss_pred             HHHHHHHHHcCCCEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccccccccc--CHHHHHHHHHHcC-
Confidence            9888999999999999999999999999887 5888887654  58999999999999764443  2344566766665 


Q ss_pred             cceEEEeCcccCCChhHHHHHHHHHHh
Q 006490          150 IETCVECSATTMIQVPDVFYYAQKAVL  176 (643)
Q Consensus       150 ~~~~~~~Sa~~~~gi~~l~~~i~~~~~  176 (643)
                       .+++++||++|.|++++|+++.+.+.
T Consensus       159 -~~~~~~Sa~~~~~v~~l~~~l~~~~~  184 (195)
T 3bc1_A          159 -IPYFETSAANGTNISHAIEMLLDLIM  184 (195)
T ss_dssp             -CCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             -CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence             37999999999999999999988764

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.90  E-value=7e-24  Score=199.34  Aligned_cols=163  Identities=21%  Similarity=0.378  Sum_probs=122.6

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (643)
                      ...+||+++|++|||||||+++|++..+...+.||+++.+... +...+....+.+||++|++.+..+  +..+++.+|+
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d~   82 (182)
T 3bwd_D            6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSAN-VVVNGATVNLGLWDTAGQEDYNRL--RPLSYRGADV   82 (182)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCC-CC-------CEEECCCC-CTTTTT--GGGGGTTCSE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEE-EEECCEEEEEEEEECCCChhhhhh--HHhhccCCCE
Confidence            3468999999999999999999999888777777776544322 333444556679999999888777  6788899999


Q ss_pred             EEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccc-----------cHHHHHHHHHHhCCCCcE
Q 006490          501 TIFVYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-----------AVQDSARVTQELGIEPPI  568 (643)
Q Consensus       501 illv~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~-----------~~~~~~~~~~~~~~~~~~  568 (643)
                      +++|||++++.+++.+. .|+..+.....    +.|+++|+||+|+.....           ..+...++++.+++.+++
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  158 (182)
T 3bwd_D           83 FILAFSLISKASYENVSKKWIPELKHYAP----GVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYI  158 (182)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHCT----TCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEE
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhCC----CCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEE
Confidence            99999999999999987 68888877653    799999999999876433           356778889999975599


Q ss_pred             EeeeccC-CHHHHHHHHHHHHhC
Q 006490          569 PVSMKSK-DLNNVFSRIIWAAEH  590 (643)
Q Consensus       569 ~vSa~~g-~i~~l~~~l~~~~~~  590 (643)
                      +|||++| |++++|+.|.+.+..
T Consensus       159 ~~Sa~~~~gi~~l~~~l~~~i~~  181 (182)
T 3bwd_D          159 ECSSKSQENVKGVFDAAIRVVLQ  181 (182)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHSC
T ss_pred             EEECCCCCCHHHHHHHHHHHHhc
Confidence            9999999 999999999998754

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.90  E-value=2.4e-23  Score=201.77  Aligned_cols=165  Identities=12%  Similarity=0.209  Sum_probs=136.9

Q ss_pred             cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCC----------cEEEEEEecCCchhhhhhh
Q 006490          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGG----------NKKTLILQEIPEEGVKKIL  489 (643)
Q Consensus       420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~----------~~~~~i~d~~g~~~~~~~~  489 (643)
                      ....+||+|+|.+|||||||+|+|++..+...+.+|.+.++....+...+.          ...+.+||++|++.+..+ 
T Consensus        22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~-  100 (217)
T 2f7s_A           22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSL-  100 (217)
T ss_dssp             CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHH-
T ss_pred             cceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhH-
Confidence            456799999999999999999999998886666567666666655655544          567889999999888777 


Q ss_pred             ccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcE
Q 006490          490 SNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPI  568 (643)
Q Consensus       490 ~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~  568 (643)
                       +..+++.+|++|+|||++++.+++.+..|+..+.......  ++|+++|+||+|+...+.. .+..+++++.+++. ++
T Consensus       101 -~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~--~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~-~~  176 (217)
T 2f7s_A          101 -TTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCE--NPDIVLIGNKADLPDQREVNERQARELADKYGIP-YF  176 (217)
T ss_dssp             -HHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTT--CCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCC-EE
T ss_pred             -HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcC--CCCEEEEEECCccccccccCHHHHHHHHHHCCCc-EE
Confidence             7788999999999999999999999998887775543212  7999999999999765443 67788899999986 99


Q ss_pred             EeeeccC-CHHHHHHHHHHHHh
Q 006490          569 PVSMKSK-DLNNVFSRIIWAAE  589 (643)
Q Consensus       569 ~vSa~~g-~i~~l~~~l~~~~~  589 (643)
                      +|||++| |++++|++|.+.+.
T Consensus       177 ~~Sa~~g~gi~~l~~~l~~~i~  198 (217)
T 2f7s_A          177 ETSAATGQNVEKAVETLLDLIM  198 (217)
T ss_dssp             EEBTTTTBTHHHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHHHHH
Confidence            9999999 99999999998764

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.90  E-value=5.4e-23  Score=192.87  Aligned_cols=166  Identities=19%  Similarity=0.249  Sum_probs=124.6

Q ss_pred             CCCCCccEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccC
Q 006490            7 SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPE-KVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRA   83 (643)
Q Consensus         7 ~~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a   83 (643)
                      ......+||+|+|++|||||||+|+|++..+.. .+.++.+...  ....+....+.+.+|||||++.+...+..+++.+
T Consensus         5 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~   84 (180)
T 2g6b_A            5 DFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDA   84 (180)
T ss_dssp             CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGC
T ss_pred             ccCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCC
Confidence            345667999999999999999999999988753 3333333322  2223445567899999999999888888999999


Q ss_pred             CEEEEEEECCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCC
Q 006490           84 DAVVLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMI  162 (643)
Q Consensus        84 d~il~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  162 (643)
                      |++|+|||++++.+++.+. .|+..+.... .++|+++|+||+|+......  ..+....+.+.++  .+++++||++|.
T Consensus        85 d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~  159 (180)
T 2g6b_A           85 HALLLLYDVTNKASFDNIQ-AWLTEIHEYAQHDVALMLLGNKVDSAHERVV--KREDGEKLAKEYG--LPFMETSAKTGL  159 (180)
T ss_dssp             SEEEEEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECCSTTSCCCS--CHHHHHHHHHHHT--CCEEECCTTTCT
T ss_pred             CEEEEEEECCCHHHHHHHH-HHHHHHHHhCCCCCcEEEEEECcccCccccc--CHHHHHHHHHHcC--CeEEEEeCCCCC
Confidence            9999999999999999887 5888887654 58999999999999875544  2344566666665  379999999999


Q ss_pred             ChhHHHHHHHHHHhC
Q 006490          163 QVPDVFYYAQKAVLH  177 (643)
Q Consensus       163 gi~~l~~~i~~~~~~  177 (643)
                      |++++++++.+.+..
T Consensus       160 gi~~l~~~l~~~~~~  174 (180)
T 2g6b_A          160 NVDLAFTAIAKELKR  174 (180)
T ss_dssp             THHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHH
Confidence            999999999988754

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.90  E-value=5.9e-23  Score=193.61  Aligned_cols=163  Identities=21%  Similarity=0.357  Sum_probs=135.6

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i  501 (643)
                      ..+||+++|.+|||||||+++|++..+...+.+|+...+. ..+...+....+.+||++|++.+..+  +..+++.+|++
T Consensus         4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d~~   80 (186)
T 1mh1_A            4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQEDYDRL--RPLSYPQTDVS   80 (186)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEE-EEEEETTEEEEEEEECCCCSGGGTTT--GGGGCTTCSEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeE-EEEEECCEEEEEEEEECCCCHhHHHH--HHHhccCCcEE
Confidence            4689999999999999999999998887777777776553 34455656667789999999888776  66788999999


Q ss_pred             EEEEeCCChhhHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcc-------------ccHHHHHHHHHHhCCCCc
Q 006490          502 IFVYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-------------MAVQDSARVTQELGIEPP  567 (643)
Q Consensus       502 llv~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~-------------~~~~~~~~~~~~~~~~~~  567 (643)
                      ++|||++++.+++... .|+..+.....    +.|+++|+||+|+....             ...+....+++.++..++
T Consensus        81 i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  156 (186)
T 1mh1_A           81 LICFSLVSPASFENVRAKWYPEVRHHCP----NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKY  156 (186)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHST----TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred             EEEEECCChhhHHHHHHHHHHHHHHhCC----CCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEE
Confidence            9999999999999887 68888877654    78999999999986532             124567778888887559


Q ss_pred             EEeeeccC-CHHHHHHHHHHHHhCC
Q 006490          568 IPVSMKSK-DLNNVFSRIIWAAEHP  591 (643)
Q Consensus       568 ~~vSa~~g-~i~~l~~~l~~~~~~~  591 (643)
                      ++|||++| |++++|+.+.+.+..+
T Consensus       157 ~~~Sa~~g~gi~~l~~~l~~~~~~~  181 (186)
T 1mh1_A          157 LECSALTQRGLKTVFDEAIRAVLCP  181 (186)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHSCC
T ss_pred             EEecCCCccCHHHHHHHHHHHHhcc
Confidence            99999999 9999999999988644

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.90  E-value=2.2e-23  Score=195.20  Aligned_cols=170  Identities=19%  Similarity=0.254  Sum_probs=127.7

Q ss_pred             CCCCCCCCCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHH
Q 006490            1 MPGGSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNE   78 (643)
Q Consensus         1 m~~~~~~~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~   78 (643)
                      |+.......++.+||+|+|++|||||||+|+|++..+.....++.+...  ....+....+.+.+|||||++.+...+..
T Consensus         3 m~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~   82 (179)
T 2y8e_A            3 MSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPS   82 (179)
T ss_dssp             ---------CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHH
T ss_pred             cccccccCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHH
Confidence            3333333445679999999999999999999999887665444333222  22334455678999999999999889999


Q ss_pred             hhccCCEEEEEEECCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeC
Q 006490           79 ELKRADAVVLTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECS  157 (643)
Q Consensus        79 ~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  157 (643)
                      +++.+|++|+|||++++.+++.+. .|+..+... ..++|+++|+||+|+...+.. . .+....+...++  .+++++|
T Consensus        83 ~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~-~-~~~~~~~~~~~~--~~~~~~S  157 (179)
T 2y8e_A           83 YIRDSTVAVVVYDITNTNSFHQTS-KWIDDVRTERGSDVIIMLVGNKTDLSDKRQV-S-TEEGERKAKELN--VMFIETS  157 (179)
T ss_dssp             HHHTCSEEEEEEETTCHHHHHTHH-HHHHHHHHHHTTSSEEEEEEECGGGGGGCCS-C-HHHHHHHHHHHT--CEEEEEB
T ss_pred             HhcCCCEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECCcccccCcC-C-HHHHHHHHHHcC--CeEEEEe
Confidence            999999999999999999999887 488777654 358999999999999765443 2 233455556655  3799999


Q ss_pred             cccCCChhHHHHHHHHHH
Q 006490          158 ATTMIQVPDVFYYAQKAV  175 (643)
Q Consensus       158 a~~~~gi~~l~~~i~~~~  175 (643)
                      |++|.|++++++++.+.+
T Consensus       158 a~~~~~i~~l~~~l~~~~  175 (179)
T 2y8e_A          158 AKAGYNVKQLFRRVAAAL  175 (179)
T ss_dssp             TTTTBSHHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHHHHHH
Confidence            999999999999988754

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.90  E-value=3e-23  Score=200.70  Aligned_cols=164  Identities=19%  Similarity=0.323  Sum_probs=118.6

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (643)
                      ...+||+|+|.+|||||||+|+|++..+...+.+|+.+.+ ...+...+....+.+||++|++.+..+  +..+++.+|+
T Consensus        32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~--~~~~~~~~d~  108 (214)
T 2j1l_A           32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRL--RPLFYPDASV  108 (214)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC-----------------CEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHH--HHHHhccCCE
Confidence            3468999999999999999999999988777777776544 344556656667889999999888777  6778899999


Q ss_pred             EEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcc-------------ccHHHHHHHHHHhCCCC
Q 006490          501 TIFVYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-------------MAVQDSARVTQELGIEP  566 (643)
Q Consensus       501 illv~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~-------------~~~~~~~~~~~~~~~~~  566 (643)
                      +++|||++++.+|+.+. .|+..+.....    ++|+++|+||+|+....             ...++...+++.+++.+
T Consensus       109 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  184 (214)
T 2j1l_A          109 LLLCFDVTSPNSFDNIFNRWYPEVNHFCK----KVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVA  184 (214)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHCS----SCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSE
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHHhCC----CCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCE
Confidence            99999999999999987 68888877654    79999999999997643             12456788889999855


Q ss_pred             cEEeeeccC-CHHHHHHHHHHHHhCC
Q 006490          567 PIPVSMKSK-DLNNVFSRIIWAAEHP  591 (643)
Q Consensus       567 ~~~vSa~~g-~i~~l~~~l~~~~~~~  591 (643)
                      +++|||++| |++++|+.|.+.+...
T Consensus       185 ~~~~SA~~g~gi~el~~~l~~~~~~~  210 (214)
T 2j1l_A          185 YLECSARLHDNVHAVFQEAAEVALSS  210 (214)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHHHHC
T ss_pred             EEEecCCCCCCHHHHHHHHHHHHHHh
Confidence            999999999 9999999999987633

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.90  E-value=4.8e-23  Score=197.78  Aligned_cols=162  Identities=20%  Similarity=0.297  Sum_probs=135.4

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (643)
                      ...+||+|+|++|||||||+|+|++..+...+.+|+...+. ..+...+....+.+||++|++.+..+  ...+++.+|+
T Consensus        26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~d~  102 (205)
T 1gwn_A           26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNV--RPLSYPDSDA  102 (205)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEESSSSEEEEEEEEECCSGGGTTT--GGGGCTTCSE
T ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEE-EEEEECCEEEEEEEEeCCCcHhhhHH--HHhhccCCCE
Confidence            45689999999999999999999999988777777776553 44666766778899999999888777  6778899999


Q ss_pred             EEEEEeCCChhhHHHH-HHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCc-------------cccHHHHHHHHHHhCCCC
Q 006490          501 TIFVYDSSDEYSWKRT-KELLVEVARLGEDSGYGVPCLLIASKDDLKPY-------------TMAVQDSARVTQELGIEP  566 (643)
Q Consensus       501 illv~D~s~~~s~~~~-~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~-------------~~~~~~~~~~~~~~~~~~  566 (643)
                      +++|||++++.+|+.+ ..|+..+.....    +.|+++|+||+|+...             ....++..++++.++..+
T Consensus       103 ~ilv~D~~~~~s~~~~~~~~~~~i~~~~~----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  178 (205)
T 1gwn_A          103 VLICFDISRPETLDSVLKKWKGEIQEFCP----NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAAT  178 (205)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHCT----TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSE
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHHCC----CCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCE
Confidence            9999999999999998 678888877653    7999999999999742             122567888998988545


Q ss_pred             cEEeeec-cC-CHHHHHHHHHHHHh
Q 006490          567 PIPVSMK-SK-DLNNVFSRIIWAAE  589 (643)
Q Consensus       567 ~~~vSa~-~g-~i~~l~~~l~~~~~  589 (643)
                      +++|||+ +| |++++|+.|.+.+.
T Consensus       179 ~~e~SAk~~~~gv~~lf~~l~~~~l  203 (205)
T 1gwn_A          179 YIECSALQSENSVRDIFHVATLACV  203 (205)
T ss_dssp             EEECCTTTCHHHHHHHHHHHHHHHH
T ss_pred             EEEeeeccCCcCHHHHHHHHHHHHh
Confidence            9999999 57 99999999998764

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.90  E-value=6.8e-23  Score=196.91  Aligned_cols=163  Identities=17%  Similarity=0.263  Sum_probs=131.6

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEE
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV   86 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i   86 (643)
                      ....+||+|+|++|||||||+|+|++..+...+.++.+...  ....+....+.+.+|||||++.+...+..+++.+|++
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~v   84 (206)
T 2bcg_Y            5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGI   84 (206)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEE
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEE
Confidence            45579999999999999999999999987665444333322  2233445567899999999999988899999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChh
Q 006490           87 VLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP  165 (643)
Q Consensus        87 l~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  165 (643)
                      |+|||++++.+++.+. .|+..+.... .++|+++|+||+|+...+..  ..+....+....+  .+++++||++|.||+
T Consensus        85 ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~g~gi~  159 (206)
T 2bcg_Y           85 IIVYDVTDQESFNGVK-MWLQEIDRYATSTVLKLLVGNKCDLKDKRVV--EYDVAKEFADANK--MPFLETSALDSTNVE  159 (206)
T ss_dssp             EEEEETTCHHHHHHHH-HHHHHHHHHSCTTCEEEEEEECTTCTTTCCS--CHHHHHHHHHHTT--CCEEECCTTTCTTHH
T ss_pred             EEEEECcCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECCCCcccccc--CHHHHHHHHHHcC--CeEEEEeCCCCCCHH
Confidence            9999999999999988 4888887653 57999999999999875544  2334556666665  379999999999999


Q ss_pred             HHHHHHHHHHh
Q 006490          166 DVFYYAQKAVL  176 (643)
Q Consensus       166 ~l~~~i~~~~~  176 (643)
                      ++|+++.+.+.
T Consensus       160 ~l~~~l~~~i~  170 (206)
T 2bcg_Y          160 DAFLTMARQIK  170 (206)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998765

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.90  E-value=9.2e-23  Score=195.26  Aligned_cols=162  Identities=20%  Similarity=0.313  Sum_probs=136.0

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (643)
                      ...+||+|+|.+|||||||+|+|.+..+...+.||+...+... +...+....+.+||++|++.+..+  +..+++.+|+
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~d~   99 (201)
T 2gco_A           23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIAD-IEVDGKQVELALWDTAGQEDYDRL--RPLSYPDTDV   99 (201)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEE-EEETTEEEEEEEECCCCSGGGTTT--GGGGCTTCSE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEE-EEECCEEEEEEEEECCCchhHHHH--HHHhcCCCCE
Confidence            3568999999999999999999999998888878877766543 556655678889999999888777  6678899999


Q ss_pred             EEEEEeCCChhhHHHH-HHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcc-------------ccHHHHHHHHHHhCCCC
Q 006490          501 TIFVYDSSDEYSWKRT-KELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-------------MAVQDSARVTQELGIEP  566 (643)
Q Consensus       501 illv~D~s~~~s~~~~-~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~-------------~~~~~~~~~~~~~~~~~  566 (643)
                      +++|||++++.+++.+ ..|+..+.....    +.|+++|+||+|+....             ...+....+++.++..+
T Consensus       100 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  175 (201)
T 2gco_A          100 ILMCFSIDSPDSLENIPEKWTPEVKHFCP----NVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFG  175 (201)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHST----TCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSE
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhCC----CCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcE
Confidence            9999999999999988 578888777543    79999999999997642             22556778888888856


Q ss_pred             cEEeeeccC-CHHHHHHHHHHHHh
Q 006490          567 PIPVSMKSK-DLNNVFSRIIWAAE  589 (643)
Q Consensus       567 ~~~vSa~~g-~i~~l~~~l~~~~~  589 (643)
                      +++|||++| |++++|++|.+.+.
T Consensus       176 ~~~~SA~~g~gi~~l~~~i~~~~l  199 (201)
T 2gco_A          176 YLECSAKTKEGVREVFEMATRAGL  199 (201)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEEeeCCCCCCHHHHHHHHHHHHh
Confidence            999999999 99999999998764

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.90  E-value=3.2e-23  Score=198.09  Aligned_cols=163  Identities=18%  Similarity=0.264  Sum_probs=123.5

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEE
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV   86 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i   86 (643)
                      ....+||+|+|++|||||||+|+|++..+.....++.+.+.  ....+....+.+.+|||||++.+...+..+++.+|++
T Consensus        25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i  104 (199)
T 2p5s_A           25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGV  104 (199)
T ss_dssp             ---CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEE
T ss_pred             cCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEE
Confidence            45579999999999999999999999887655443333222  3334555668899999999999988999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCC------CCccchhhhhhhHHHHhhcccceEEEeCcc
Q 006490           87 VLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRG------DHNATSLEEVMGPIMQQFREIETCVECSAT  159 (643)
Q Consensus        87 l~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  159 (643)
                      |+|||++++.+++.+. .|+..+.... .++|+++|+||+|+..      .+.+  ..+..+.++..++  .+++++||+
T Consensus       105 ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v--~~~~~~~~~~~~~--~~~~~~SA~  179 (199)
T 2p5s_A          105 LLLYDVTCEKSFLNIR-EWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCV--PGHFGEKLAMTYG--ALFCETSAK  179 (199)
T ss_dssp             EEEEETTCHHHHHTHH-HHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCC--CHHHHHHHHHHHT--CEEEECCTT
T ss_pred             EEEEECCChHHHHHHH-HHHHHHHHhcCCCCCEEEEEECccccccccccccccc--CHHHHHHHHHHcC--CeEEEeeCC
Confidence            9999999999999987 5888887643 4799999999999862      2222  2344556666665  379999999


Q ss_pred             cCCChhHHHHHHHHHHh
Q 006490          160 TMIQVPDVFYYAQKAVL  176 (643)
Q Consensus       160 ~~~gi~~l~~~i~~~~~  176 (643)
                      +|.||+++|+++.+.+.
T Consensus       180 ~g~gv~el~~~l~~~i~  196 (199)
T 2p5s_A          180 DGSNIVEAVLHLAREVK  196 (199)
T ss_dssp             TCTTHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHH
Confidence            99999999999998765

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.90  E-value=9.3e-24  Score=205.40  Aligned_cols=171  Identities=16%  Similarity=0.252  Sum_probs=136.0

Q ss_pred             CCCCCCCCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHh
Q 006490            2 PGGSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEE   79 (643)
Q Consensus         2 ~~~~~~~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~   79 (643)
                      ..+........+||+|+|++|||||||+|+|+.+.+...+.++.+.+.  ....+....+.+.+|||||++.+...+..+
T Consensus         5 ~~~~~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~   84 (221)
T 3gj0_A            5 ASAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGY   84 (221)
T ss_dssp             -CCSTTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHH
T ss_pred             ccccCCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHH
Confidence            334445567789999999999999999999777665544333333333  334455667899999999999988889999


Q ss_pred             hccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcc
Q 006490           80 LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT  159 (643)
Q Consensus        80 ~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  159 (643)
                      ++.+|++|+|||++++.+++.+. .|+..+.....++|+++|+||+|+......    .....+....+  .++++|||+
T Consensus        85 ~~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~----~~~~~~~~~~~--~~~~~~Sa~  157 (221)
T 3gj0_A           85 YIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDRKVK----AKSIVFHRKKN--LQYYDISAK  157 (221)
T ss_dssp             HTTCCEEEEEEETTCHHHHHTHH-HHHHHHHHHSTTCCEEEEEECTTSSSCSSC----GGGCCHHHHHT--CEEEECBGG
T ss_pred             HhcCCEEEEEEECCCHHHHHHHH-HHHHHHHHhCCCCCEEEEEECCcccccccc----HHHHHHHHHcC--CEEEEEeCC
Confidence            99999999999999999999988 599999887779999999999999765332    23345555555  379999999


Q ss_pred             cCCChhHHHHHHHHHHhCCC
Q 006490          160 TMIQVPDVFYYAQKAVLHPT  179 (643)
Q Consensus       160 ~~~gi~~l~~~i~~~~~~~~  179 (643)
                      +|.||+++|+++.+.+....
T Consensus       158 ~~~gi~~l~~~l~~~l~~~~  177 (221)
T 3gj0_A          158 SNYNFEKPFLWLARKLIGDP  177 (221)
T ss_dssp             GTBTTTHHHHHHHHHHHTCT
T ss_pred             CCCCHHHHHHHHHHHHHhCc
Confidence            99999999999999886543

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.90  E-value=2.7e-23  Score=193.09  Aligned_cols=161  Identities=20%  Similarity=0.246  Sum_probs=125.7

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-CeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (643)
Q Consensus        11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v   89 (643)
                      +.+||+++|++|||||||+|+|++..+.....++.+ .+..........+.+.+|||||++.+...+..+++.+|++++|
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (172)
T 2erx_A            2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV   81 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence            468999999999999999999999887655333333 2333334445567899999999999988899999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHhc---CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhH
Q 006490           90 YACNQQSTLSRLSSYWLPELRRL---EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (643)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~~---~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  166 (643)
                      ||++++.+++.+.. |...+.+.   .+++|+++|+||+|+...+..  ..+....+...++  .+++++||++|.|+++
T Consensus        82 ~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~  156 (172)
T 2erx_A           82 YSITSRQSLEELKP-IYEQICEIKGDVESIPIMLVGNKCDESPSREV--QSSEAEALARTWK--CAFMETSAKLNHNVKE  156 (172)
T ss_dssp             EETTCHHHHHTTHH-HHHHHHHHHC---CCCEEEEEECGGGGGGCCS--CHHHHHHHHHHHT--CEEEECBTTTTBSHHH
T ss_pred             EECcCHHHHHHHHH-HHHHHHHHhCCCCCCCEEEEEEcccccccccc--CHHHHHHHHHHhC--CeEEEecCCCCcCHHH
Confidence            99999999988774 77666553   247999999999998765444  2233455666665  3799999999999999


Q ss_pred             HHHHHHHHHh
Q 006490          167 VFYYAQKAVL  176 (643)
Q Consensus       167 l~~~i~~~~~  176 (643)
                      +++++.+.+.
T Consensus       157 l~~~l~~~~~  166 (172)
T 2erx_A          157 LFQELLNLEK  166 (172)
T ss_dssp             HHHHHHHTCC
T ss_pred             HHHHHHHHHh
Confidence            9999987643

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.90  E-value=5.7e-23  Score=192.15  Aligned_cols=164  Identities=21%  Similarity=0.261  Sum_probs=126.5

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEE
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV   86 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i   86 (643)
                      ....+||+|+|++|||||||+|+|++..+.....++.+...  ....+....+.+.+|||||++.+...+..+++.+|++
T Consensus         4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   83 (177)
T 1wms_A            4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC   83 (177)
T ss_dssp             CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence            44568999999999999999999999887655444333332  2233444557899999999999988888999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHhcC-----CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccC
Q 006490           87 VLTYACNQQSTLSRLSSYWLPELRRLE-----IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM  161 (643)
Q Consensus        87 l~v~d~~~~~s~~~~~~~~~~~l~~~~-----~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  161 (643)
                      ++|||++++.+++.+. .|...+....     .++|+++|+||+|+.. ...  ..+....++..... .+++++||++|
T Consensus        84 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-~~~--~~~~~~~~~~~~~~-~~~~~~Sa~~~  158 (177)
T 1wms_A           84 LLTFSVDDSQSFQNLS-NWKKEFIYYADVKEPESFPFVILGNKIDISE-RQV--STEEAQAWCRDNGD-YPYFETSAKDA  158 (177)
T ss_dssp             EEEEETTCHHHHHTHH-HHHHHHHHHHTCSCTTTSCEEEEEECTTCSS-CSS--CHHHHHHHHHHTTC-CCEEECCTTTC
T ss_pred             EEEEECcCHHHHHHHH-HHHHHHHHHccccccCCCcEEEEEECCcccc-ccc--CHHHHHHHHHhcCC-ceEEEEeCCCC
Confidence            9999999999999887 5888876532     5789999999999973 222  23344555553333 37999999999


Q ss_pred             CChhHHHHHHHHHHhC
Q 006490          162 IQVPDVFYYAQKAVLH  177 (643)
Q Consensus       162 ~gi~~l~~~i~~~~~~  177 (643)
                      .|++++|+++.+.+..
T Consensus       159 ~gi~~l~~~l~~~~~~  174 (177)
T 1wms_A          159 TNVAAAFEEAVRRVLA  174 (177)
T ss_dssp             TTHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHh
Confidence            9999999999988764

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.90  E-value=3e-23  Score=196.56  Aligned_cols=163  Identities=19%  Similarity=0.311  Sum_probs=126.2

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcch-hhhHHhhccCC
Q 006490            8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENK-GKLNEELKRAD   84 (643)
Q Consensus         8 ~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~-~~~~~~~~~ad   84 (643)
                      ..++.+||+|+|++|||||||+|+|++..+.....++.+...  ....+....+.+.+|||||++.+. ..+..+++.+|
T Consensus        16 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d   95 (189)
T 1z06_A           16 SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVH   95 (189)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCC
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCC
Confidence            345679999999999999999999999887665443333222  233344556889999999998887 77889999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccC-
Q 006490           85 AVVLTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM-  161 (643)
Q Consensus        85 ~il~v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~-  161 (643)
                      ++|+|||++++.+++.+.. |+..+...  ..++|+++|+||+|+...+.+  ..+..+.++..++  .+++++||++| 
T Consensus        96 ~iilv~D~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v--~~~~~~~~~~~~~--~~~~~~Sa~~~~  170 (189)
T 1z06_A           96 AVVFVYDMTNMASFHSLPA-WIEECKQHLLANDIPRILVGNKCDLRSAIQV--PTDLAQKFADTHS--MPLFETSAKNPN  170 (189)
T ss_dssp             EEEEEEETTCHHHHHTHHH-HHHHHHHHCCCSCCCEEEEEECTTCGGGCCS--CHHHHHHHHHHTT--CCEEECCSSSGG
T ss_pred             EEEEEEECcCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccccee--CHHHHHHHHHHcC--CEEEEEeCCcCC
Confidence            9999999999999999884 88888664  358999999999999765443  2344566666665  36999999999 


Q ss_pred             --CChhHHHHHHHHHH
Q 006490          162 --IQVPDVFYYAQKAV  175 (643)
Q Consensus       162 --~gi~~l~~~i~~~~  175 (643)
                        .||+++|+++.+.+
T Consensus       171 ~~~~i~~l~~~l~~~i  186 (189)
T 1z06_A          171 DNDHVEAIFMTLAHKL  186 (189)
T ss_dssp             GGSCHHHHHHHHC---
T ss_pred             cccCHHHHHHHHHHHH
Confidence              99999999987764

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.90  E-value=4.4e-23  Score=196.63  Aligned_cols=162  Identities=20%  Similarity=0.290  Sum_probs=129.0

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEE
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il   87 (643)
                      ..+.+||+|+|++|||||||+++|++..+...+.++.+... ....+....+.+.+|||||++. ...+..+++.+|++|
T Consensus        25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ii  103 (196)
T 2atv_A           25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFV  103 (196)
T ss_dssp             --CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEE
Confidence            45679999999999999999999999988766554443322 3344555678899999999987 677889999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCC-Ch
Q 006490           88 LTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMI-QV  164 (643)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-gi  164 (643)
                      +|||++++.+++.+. .|...+...  ..++|+++|+||+|+...+.+  ..+....++..++  .++++|||++|. |+
T Consensus       104 lv~D~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v--~~~~~~~~~~~~~--~~~~~~Sa~~g~~gi  178 (196)
T 2atv_A          104 LVYDITDRGSFEEVL-PLKNILDEIKKPKNVTLILVGNKADLDHSRQV--STEEGEKLATELA--CAFYECSACTGEGNI  178 (196)
T ss_dssp             EEEETTCHHHHHTHH-HHHHHHHHHHTTSCCCEEEEEECGGGGGGCCS--CHHHHHHHHHHHT--SEEEECCTTTCTTCH
T ss_pred             EEEECcCHHHHHHHH-HHHHHHHHhhCCCCCcEEEEEECccccccccc--CHHHHHHHHHHhC--CeEEEECCCcCCcCH
Confidence            999999999999987 488777653  358999999999999765444  2344556666665  379999999999 99


Q ss_pred             hHHHHHHHHHHh
Q 006490          165 PDVFYYAQKAVL  176 (643)
Q Consensus       165 ~~l~~~i~~~~~  176 (643)
                      +++|+++.+.+.
T Consensus       179 ~~l~~~l~~~i~  190 (196)
T 2atv_A          179 TEIFYELCREVR  190 (196)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988764

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.90  E-value=3.7e-23  Score=195.16  Aligned_cols=164  Identities=22%  Similarity=0.256  Sum_probs=130.1

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCE
Q 006490            8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADA   85 (643)
Q Consensus         8 ~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~   85 (643)
                      .....+||+|+|++|||||||+|+|++..+.....++.+...  ....+....+.+.+|||||++.+...+..+++.+|+
T Consensus         6 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   85 (186)
T 2bme_A            6 TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAG   85 (186)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSE
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCE
Confidence            345679999999999999999999999887665444333222  223344445789999999999998888999999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCCh
Q 006490           86 VVLTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQV  164 (643)
Q Consensus        86 il~v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  164 (643)
                      +|+|||++++.+++.+. .|+..+... ..++|+++|+||+|+...+.. . .+....++...+  .+++++||++|.|+
T Consensus        86 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-~-~~~~~~~~~~~~--~~~~~~Sa~~~~gi  160 (186)
T 2bme_A           86 ALLVYDITSRETYNALT-NWLTDARMLASQNIVIILCGNKKDLDADREV-T-FLEASRFAQENE--LMFLETSALTGENV  160 (186)
T ss_dssp             EEEEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECGGGGGGCCS-C-HHHHHHHHHHTT--CEEEECCTTTCTTH
T ss_pred             EEEEEECcCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECccccccccc-C-HHHHHHHHHHcC--CEEEEecCCCCCCH
Confidence            99999999999999887 488887654 358999999999999754443 2 233455666665  37999999999999


Q ss_pred             hHHHHHHHHHHh
Q 006490          165 PDVFYYAQKAVL  176 (643)
Q Consensus       165 ~~l~~~i~~~~~  176 (643)
                      +++|+++.+.+.
T Consensus       161 ~~l~~~l~~~~~  172 (186)
T 2bme_A          161 EEAFVQCARKIL  172 (186)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988765

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.90  E-value=4.2e-23  Score=200.27  Aligned_cols=170  Identities=17%  Similarity=0.182  Sum_probs=136.8

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCc-EEEEEEecCCchhhhhhhccHHhhccCC
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGN-KKTLILQEIPEEGVKKILSNKEALASCD  499 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~-~~~~i~d~~g~~~~~~~~~~~~~~~~ad  499 (643)
                      ...+||+|+|.+|||||||+|+|++..+...+.+|.+.......+...++. ..+.+||++|++.+..+  ...++..+|
T Consensus         9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~d   86 (218)
T 4djt_A            9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVL--KDVYYIGAS   86 (218)
T ss_dssp             -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCC--CHHHHTTCS
T ss_pred             cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchH--HHHHhhcCC
Confidence            457999999999999999999999988876666776655544444444333 67889999999888776  778899999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CH
Q 006490          500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DL  577 (643)
Q Consensus       500 ~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i  577 (643)
                      ++++|||++++.+++.+..|+..+......   +.|+++|+||+|+...... .+....++...++. +++|||++| |+
T Consensus        87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~g~gv  162 (218)
T 4djt_A           87 GAILFFDVTSRITCQNLARWVKEFQAVVGN---EAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYE-YFEISAKTAHNF  162 (218)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHCS---SSCEEEEEECTTCC----CCHHHHHHHTTTCCCE-EEEEBTTTTBTT
T ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHhcCC---CCCEEEEEECCCCccccccCHHHHHHHHHHcCCc-EEEEecCCCCCH
Confidence            999999999999999999999988776543   6899999999999875333 56666777777776 999999999 99


Q ss_pred             HHHHHHHHHHHhCCCCCCC
Q 006490          578 NNVFSRIIWAAEHPHLNIP  596 (643)
Q Consensus       578 ~~l~~~l~~~~~~~~~~~~  596 (643)
                      +++|++|.+.+.......+
T Consensus       163 ~~l~~~l~~~~~~~~~~~~  181 (218)
T 4djt_A          163 GLPFLHLARIFTGRPDLIF  181 (218)
T ss_dssp             THHHHHHHHHHHCCTTCCB
T ss_pred             HHHHHHHHHHHhccccccc
Confidence            9999999999876655543

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.90  E-value=7.6e-23  Score=191.87  Aligned_cols=163  Identities=18%  Similarity=0.240  Sum_probs=129.9

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEE
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il   87 (643)
                      ..+.+||+|+|++|||||||+|+|++..+...++++.+... ....+....+.+.+|||||++.+...+..+++.+|+++
T Consensus         6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i   85 (181)
T 2fn4_A            6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFL   85 (181)
T ss_dssp             SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEE
Confidence            45679999999999999999999999988776555444332 22334444578999999999999889999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHH-Hhc-CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChh
Q 006490           88 LTYACNQQSTLSRLSSYWLPEL-RRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP  165 (643)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~l-~~~-~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  165 (643)
                      +|||++++.+++.+.. |+..+ +.. ..++|+++|+||+|+...+.+ . .+....+....+  .+++++||++|.|++
T Consensus        86 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v-~-~~~~~~~~~~~~--~~~~~~Sa~~~~gv~  160 (181)
T 2fn4_A           86 LVFAINDRQSFNEVGK-LFTQILRVKDRDDFPVVLVGNKADLESQRQV-P-RSEASAFGASHH--VAYFEASAKLRLNVD  160 (181)
T ss_dssp             EEEETTCHHHHHHHHH-HHHHHHHHHTSSCCCEEEEEECGGGGGGCCS-C-HHHHHHHHHHTT--CEEEECBTTTTBSHH
T ss_pred             EEEeCCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccccccccc-C-HHHHHHHHHHcC--CeEEEecCCCCCCHH
Confidence            9999999999999884 77666 433 358999999999999765444 2 334455666654  379999999999999


Q ss_pred             HHHHHHHHHHh
Q 006490          166 DVFYYAQKAVL  176 (643)
Q Consensus       166 ~l~~~i~~~~~  176 (643)
                      ++|+++.+.+.
T Consensus       161 ~l~~~l~~~~~  171 (181)
T 2fn4_A          161 EAFEQLVRAVR  171 (181)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988764

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.90  E-value=3.7e-23  Score=194.21  Aligned_cols=166  Identities=17%  Similarity=0.250  Sum_probs=117.0

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCccc-CCceeEEEEeCCCCCcchhhhHHhhccCC
Q 006490            8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFY-PDRVPVTIIDTSSSLENKGKLNEELKRAD   84 (643)
Q Consensus         8 ~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad   84 (643)
                      ...+.+||+|+|++|||||||+|+|++..+.....++.+...  ....+. ...+.+.+|||||.+.+...+..+++.+|
T Consensus         4 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   83 (182)
T 1ky3_A            4 RKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGAD   83 (182)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCC
T ss_pred             ccCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCC
Confidence            345679999999999999999999999887665444333222  223333 34678999999999988888889999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHHhcC-----CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcc
Q 006490           85 AVVLTYACNQQSTLSRLSSYWLPELRRLE-----IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT  159 (643)
Q Consensus        85 ~il~v~d~~~~~s~~~~~~~~~~~l~~~~-----~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  159 (643)
                      ++|+|||++++.+++.+. .|...+....     .++|+++|+||+|+...... ...+....+...... .+++++||+
T Consensus        84 ~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~-v~~~~~~~~~~~~~~-~~~~~~Sa~  160 (182)
T 1ky3_A           84 CCVLVYDVTNASSFENIK-SWRDEFLVHANVNSPETFPFVILGNKIDAEESKKI-VSEKSAQELAKSLGD-IPLFLTSAK  160 (182)
T ss_dssp             EEEEEEETTCHHHHHTHH-HHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCC-SCHHHHHHHHHHTTS-CCEEEEBTT
T ss_pred             EEEEEEECCChHHHHHHH-HHHHHHHHHhcccCcCCCcEEEEEECCcccccccc-CCHHHHHHHHHhcCC-CeEEEEecC
Confidence            999999999999999887 4887775532     58999999999999644332 223445566654443 369999999


Q ss_pred             cCCChhHHHHHHHHHHh
Q 006490          160 TMIQVPDVFYYAQKAVL  176 (643)
Q Consensus       160 ~~~gi~~l~~~i~~~~~  176 (643)
                      +|.||+++|+++.+.+.
T Consensus       161 ~~~gi~~l~~~l~~~~~  177 (182)
T 1ky3_A          161 NAINVDTAFEEIARSAL  177 (182)
T ss_dssp             TTBSHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHH
Confidence            99999999999988764

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.90  E-value=4.7e-23  Score=197.76  Aligned_cols=161  Identities=20%  Similarity=0.319  Sum_probs=133.6

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (643)
                      ...+||+++|.+|||||||+++|++..+...+.+|+.+.+ ...+...+....+.+||++|++.+..+  ...+++.+|+
T Consensus        28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~d~  104 (204)
T 4gzl_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRL--RPLSYPQTDV  104 (204)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEE-EEEEECC-CEEEEEEEEECCSGGGTTT--GGGGCTTCSE
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeeccee-EEEEEECCEEEEEEEEECCCchhhHHH--HHHHhccCCE
Confidence            4569999999999999999999999988877777776543 445666766777789999999988877  6778999999


Q ss_pred             EEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccc-------------cHHHHHHHHHHhCCCC
Q 006490          501 TIFVYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-------------AVQDSARVTQELGIEP  566 (643)
Q Consensus       501 illv~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~-------------~~~~~~~~~~~~~~~~  566 (643)
                      +++|||++++.+++.+. .|+..+.....    ++|+++|+||+|+.....             ..+....+++.+++.+
T Consensus       105 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  180 (204)
T 4gzl_A          105 FLICFSLVSPASFENVRAKWYPEVRHHCP----NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVK  180 (204)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHCS----SCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSE
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhCC----CCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcE
Confidence            99999999999999987 78888877653    799999999999976432             2556778889999877


Q ss_pred             cEEeeeccC-CHHHHHHHHHHHH
Q 006490          567 PIPVSMKSK-DLNNVFSRIIWAA  588 (643)
Q Consensus       567 ~~~vSa~~g-~i~~l~~~l~~~~  588 (643)
                      +++|||++| |++++|++|.+.+
T Consensus       181 ~~~~SA~~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          181 YLECSALTQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHTT
T ss_pred             EEEeeCCCCCCHHHHHHHHHHHh
Confidence            999999999 9999999998753

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.90  E-value=1.1e-23  Score=198.35  Aligned_cols=163  Identities=15%  Similarity=0.262  Sum_probs=102.2

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEE
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV   86 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i   86 (643)
                      ....+||+|+|++|||||||+++|++..+.....++.+...  ....+....+.+.+|||||++.+...+..+++.+|++
T Consensus         5 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   84 (183)
T 2fu5_C            5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   84 (183)
T ss_dssp             CSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEE
T ss_pred             cCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEE
Confidence            34579999999999999999999998876544222222211  2233444558899999999998888888999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChh
Q 006490           87 VLTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP  165 (643)
Q Consensus        87 l~v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  165 (643)
                      |+|||++++.+++.+.. |+..+... ..++|+++|+||+|+...+.+  ..+....+++.++  .+++++||++|.||+
T Consensus        85 i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~nK~Dl~~~~~v--~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~  159 (183)
T 2fu5_C           85 MLVYDITNEKSFDNIRN-WIRNIEEHASADVEKMILGNKCDVNDKRQV--SKERGEKLALDYG--IKFMETSAKANINVE  159 (183)
T ss_dssp             EEEEETTCHHHHHHHHH-HHHHHHHHSCTTCEEEEEEEC--CCSCCCS--CHHHHHHHHHHHT--CEEEECCC---CCHH
T ss_pred             EEEEECcCHHHHHHHHH-HHHHHHHhcCCCCCEEEEEECccCCccCcC--CHHHHHHHHHHcC--CeEEEEeCCCCCCHH
Confidence            99999999999999874 88888765 357999999999999765544  2344566777776  379999999999999


Q ss_pred             HHHHHHHHHHh
Q 006490          166 DVFYYAQKAVL  176 (643)
Q Consensus       166 ~l~~~i~~~~~  176 (643)
                      ++|+++.+.+.
T Consensus       160 ~l~~~l~~~i~  170 (183)
T 2fu5_C          160 NAFFTLARDIK  170 (183)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988764

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.90  E-value=1.1e-22  Score=187.49  Aligned_cols=160  Identities=21%  Similarity=0.332  Sum_probs=129.1

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe-eeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (643)
Q Consensus        11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v   89 (643)
                      +.+||+++|++|||||||+|+|++..+.....++.+.. .....+....+.+.+|||||.+.+...+..+++.+|++++|
T Consensus         2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T 2ce2_X            2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   81 (166)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence            46899999999999999999999988766655443332 23334445567899999999999888888999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHhcC--CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHH
Q 006490           90 YACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV  167 (643)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  167 (643)
                      ||++++.+++.+. .|...+....  .++|+++|+||+|+... ..  ..+....+.+.++  .+++++||++|.|++++
T Consensus        82 ~d~~~~~~~~~~~-~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~-~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l  155 (166)
T 2ce2_X           82 FAINNTKSFEDIH-QYREQIKRVKDSDDVPMVLVGNKSDLAAR-TV--ESRQAQDLARSYG--IPYIETSAKTRQGVEDA  155 (166)
T ss_dssp             EETTCHHHHHHHH-HHHHHHHHHHTCSCCCEEEEEECTTCSCC-CS--CHHHHHHHHHHHT--CCEEEECTTTCTTHHHH
T ss_pred             EECCCHHHHHHHH-HHHHHHHHhcCCCCCcEEEEEEchhhhhc-cc--CHHHHHHHHHHcC--CeEEEecCCCCCCHHHH
Confidence            9999999999886 5888886653  37999999999998763 22  3345566777766  37999999999999999


Q ss_pred             HHHHHHHHh
Q 006490          168 FYYAQKAVL  176 (643)
Q Consensus       168 ~~~i~~~~~  176 (643)
                      ++++.+.+.
T Consensus       156 ~~~l~~~~~  164 (166)
T 2ce2_X          156 FYTLVREIR  164 (166)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988764

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.90  E-value=1.7e-22  Score=193.63  Aligned_cols=161  Identities=16%  Similarity=0.258  Sum_probs=126.0

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCc----------------------------
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDR----------------------------   58 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~----------------------------   58 (643)
                      ....+||+|+|++|||||||+|+|++..+.....++.+...  ....+....                            
T Consensus         4 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (208)
T 3clv_A            4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQH   83 (208)
T ss_dssp             CCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC------------------------------
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccc
Confidence            45679999999999999999999999987666554443322  111222212                            


Q ss_pred             ---------eeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCC
Q 006490           59 ---------VPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRG  129 (643)
Q Consensus        59 ---------~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~  129 (643)
                               +.+.+|||||++.+...+..+++.+|++|+|||++++.+++.+. .|+..+.... ++|+++|+||+| ..
T Consensus        84 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~-~~~~~i~~~~-~~piilv~NK~D-~~  160 (208)
T 3clv_A           84 NNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAK-TWVNQLKISS-NYIIILVANKID-KN  160 (208)
T ss_dssp             -CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHH-HHHHHHHHHS-CCEEEEEEECTT-CC
T ss_pred             ccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHH-HHHHHHHhhC-CCcEEEEEECCC-cc
Confidence                     78999999999999889999999999999999999999999887 5888887654 499999999999 33


Q ss_pred             CCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHHHHHHHHHh
Q 006490          130 DHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVL  176 (643)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~  176 (643)
                      ....  ..+.+..++...+  .+++++||++|.|++++|+++.+.+.
T Consensus       161 ~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~l~~~l~~~~~  203 (208)
T 3clv_A          161 KFQV--DILEVQKYAQDNN--LLFIQTSAKTGTNIKNIFYMLAEEIY  203 (208)
T ss_dssp             -CCS--CHHHHHHHHHHTT--CEEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred             cccC--CHHHHHHHHHHcC--CcEEEEecCCCCCHHHHHHHHHHHHH
Confidence            3333  2344566666665  37999999999999999999987654

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.90  E-value=9.4e-23  Score=196.14  Aligned_cols=164  Identities=21%  Similarity=0.333  Sum_probs=130.9

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i  501 (643)
                      ..+||+|+|.+|||||||+|+|++..+...+.||++..+... +...+....+.+||++|++.+..+  +..+++.+|++
T Consensus        24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d~~  100 (207)
T 2fv8_A           24 IRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQEDYDRL--RPLSYPDTDVI  100 (207)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEE-EEETTEEEEEEEEECTTCTTCTTT--GGGGCTTCCEE
T ss_pred             cCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEE-EEECCEEEEEEEEECCCcHHHHHH--HHhhcCCCCEE
Confidence            358999999999999999999999998877777777655443 556655677889999999888776  67788999999


Q ss_pred             EEEEeCCChhhHHHH-HHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcc-------------ccHHHHHHHHHHhCCCCc
Q 006490          502 IFVYDSSDEYSWKRT-KELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-------------MAVQDSARVTQELGIEPP  567 (643)
Q Consensus       502 llv~D~s~~~s~~~~-~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~-------------~~~~~~~~~~~~~~~~~~  567 (643)
                      ++|||++++.+++.+ ..|+..+.....    ++|+++|+||+|+....             ...+....+++..+..++
T Consensus       101 i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  176 (207)
T 2fv8_A          101 LMCFSVDSPDSLENIPEKWVPEVKHFCP----NVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDY  176 (207)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHST----TCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhCC----CCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEE
Confidence            999999999999988 578888877543    79999999999997642             124567778888888569


Q ss_pred             EEeeeccC-CHHHHHHHHHHHHhCCC
Q 006490          568 IPVSMKSK-DLNNVFSRIIWAAEHPH  592 (643)
Q Consensus       568 ~~vSa~~g-~i~~l~~~l~~~~~~~~  592 (643)
                      ++|||++| |++++|++|.+.+..+.
T Consensus       177 ~~~SA~~g~gi~el~~~l~~~i~~~~  202 (207)
T 2fv8_A          177 LECSAKTKEGVREVFETATRAALQKR  202 (207)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHHSCC
T ss_pred             EEeeCCCCCCHHHHHHHHHHHHHHHh
Confidence            99999999 99999999999886543

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.90  E-value=9.4e-24  Score=200.40  Aligned_cols=162  Identities=17%  Similarity=0.220  Sum_probs=132.2

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEE
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il   87 (643)
                      ...+||+|+|++|||||||+|+|++..+.....++.+...  ....+....+.+.+|||||.+.+...+..+++.+|++|
T Consensus        21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  100 (191)
T 3dz8_A           21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFI  100 (191)
T ss_dssp             EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEE
T ss_pred             CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEE
Confidence            4568999999999999999999999887665333232222  33445567889999999999988888999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhH
Q 006490           88 LTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (643)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  166 (643)
                      +|||++++.+++.+.. |+..+.... .++|+++|+||+|+...+..  ..+..+.++..++  .+++++||++|.||++
T Consensus       101 ~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~  175 (191)
T 3dz8_A          101 LMYDITNEESFNAVQD-WATQIKTYSWDNAQVILVGNKCDMEEERVV--PTEKGQLLAEQLG--FDFFEASAKENISVRQ  175 (191)
T ss_dssp             EEEETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECTTCGGGCCS--CHHHHHHHHHHHT--CEEEECBTTTTBSHHH
T ss_pred             EEEECcCHHHHHHHHH-HHHHHHHhcCCCCCEEEEEECCCCcccccc--CHHHHHHHHHHcC--CeEEEEECCCCCCHHH
Confidence            9999999999999884 999887754 58999999999999765444  3344566777776  3799999999999999


Q ss_pred             HHHHHHHHHh
Q 006490          167 VFYYAQKAVL  176 (643)
Q Consensus       167 l~~~i~~~~~  176 (643)
                      +|+++.+.+.
T Consensus       176 l~~~l~~~i~  185 (191)
T 3dz8_A          176 AFERLVDAIC  185 (191)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988764

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.90  E-value=2.2e-22  Score=190.70  Aligned_cols=162  Identities=20%  Similarity=0.343  Sum_probs=128.4

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i  501 (643)
                      ..+||+++|.+|||||||+|+|++..+...+.+|++..+ ...+...+....+.+||++|++.+..+  ...+++.+|++
T Consensus        20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~d~~   96 (190)
T 3con_A           20 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAM--RDQYMRTGEGF   96 (190)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-------------CTTCSEE
T ss_pred             ceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHH--HHHhhCcCCEE
Confidence            458999999999999999999999988777767766544 344555655667889999999887776  67788999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC-CHHHH
Q 006490          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNV  580 (643)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l  580 (643)
                      ++|||++++.+++.+..|+..+.......  ++|+++|+||+|+.......+...++++.++++ ++++||++| |++++
T Consensus        97 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~l  173 (190)
T 3con_A           97 LCVFAINNSKSFADINLYREQIKRVKDSD--DVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIP-FIETSAKTRQGVEDA  173 (190)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHTCS--CCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCC-EEECCTTTCTTHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECCcCCcccCCHHHHHHHHHHcCCe-EEEEeCCCCCCHHHH
Confidence            99999999999999999998887765433  789999999999987444577888899999986 999999999 99999


Q ss_pred             HHHHHHHHh
Q 006490          581 FSRIIWAAE  589 (643)
Q Consensus       581 ~~~l~~~~~  589 (643)
                      +++|.+.+.
T Consensus       174 ~~~l~~~~~  182 (190)
T 3con_A          174 FYTLVREIR  182 (190)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999875

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.90  E-value=1.1e-22  Score=192.16  Aligned_cols=161  Identities=20%  Similarity=0.309  Sum_probs=128.3

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEE
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (643)
                      .+.+||+|+|++|||||||+|+|++..+...++++..... ....+....+.+.+|||||++.+...+..+++.+|++++
T Consensus         2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~   81 (189)
T 4dsu_A            2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   81 (189)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence            3578999999999999999999999888777655443322 333455566778999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhH
Q 006490           89 TYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (643)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  166 (643)
                      |||++++.+++.+. .|...+...  ..++|+++|+||+|+....   ...+....+...++  .+++++||++|.|+++
T Consensus        82 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~---~~~~~~~~~~~~~~--~~~~~~Sa~~g~gi~~  155 (189)
T 4dsu_A           82 VFAINNTKSFEDIH-HYREQIKRVKDSEDVPMVLVGNKCDLPSRT---VDTKQAQDLARSYG--IPFIETSAKTRQGVDD  155 (189)
T ss_dssp             EEETTCHHHHHHHH-HHHHHHHHHTTCSCCCEEEEEECTTSSSCS---SCHHHHHHHHHHHT--CCEEECCTTTCTTHHH
T ss_pred             EEECCCHHHHHHHH-HHHHHHHHhcCCCCCcEEEEEECccCcccc---cCHHHHHHHHHHcC--CeEEEEeCCCCCCHHH
Confidence            99999999999987 487777653  3589999999999997432   23455667777776  3799999999999999


Q ss_pred             HHHHHHHHHh
Q 006490          167 VFYYAQKAVL  176 (643)
Q Consensus       167 l~~~i~~~~~  176 (643)
                      +|+++.+.+.
T Consensus       156 l~~~l~~~~~  165 (189)
T 4dsu_A          156 AFYTLVREIR  165 (189)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988764

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.90  E-value=7e-23  Score=195.51  Aligned_cols=162  Identities=18%  Similarity=0.235  Sum_probs=121.6

Q ss_pred             CCCCCccEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCE
Q 006490            7 SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPE-KVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADA   85 (643)
Q Consensus         7 ~~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~   85 (643)
                      .......||+|+|++|||||||+++|++..+.. .+.++.+....  .+...++.+.+|||||++.+...+..+++.+|+
T Consensus        12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   89 (199)
T 4bas_A           12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVE--TFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDA   89 (199)
T ss_dssp             ----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEE--EEEETTEEEEEEEECCSGGGGGGGGGGCTTCSE
T ss_pred             cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEE--EEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCE
Confidence            445667899999999999999999999999877 54444443222  345678899999999999999999999999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHhc------C---CCCcEEEEEecccCCCCCccchhhhhhhHHH-----Hhhcccc
Q 006490           86 VVLTYACNQQSTLSRLSSYWLPELRRL------E---IKVPIIVAGCKLDLRGDHNATSLEEVMGPIM-----QQFREIE  151 (643)
Q Consensus        86 il~v~d~~~~~s~~~~~~~~~~~l~~~------~---~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~  151 (643)
                      +|+|||++++.+++.+.. |+..+...      .   .++|+++|+||+|+......   .+....+.     +..+  .
T Consensus        90 ii~v~D~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~~~~~~~~~~~~~~~~--~  163 (199)
T 4bas_A           90 VIFVVDSSDHLRLCVVKS-EIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTA---AELVEILDLTTLMGDHP--F  163 (199)
T ss_dssp             EEEEEETTCGGGHHHHHH-HHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCH---HHHHHHHTHHHHHTTSC--E
T ss_pred             EEEEEECCcHHHHHHHHH-HHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCH---HHHHHHhcchhhccCCe--e
Confidence            999999999999999885 65555432      1   27999999999999765322   11111111     1222  3


Q ss_pred             eEEEeCcccCCChhHHHHHHHHHHh
Q 006490          152 TCVECSATTMIQVPDVFYYAQKAVL  176 (643)
Q Consensus       152 ~~~~~Sa~~~~gi~~l~~~i~~~~~  176 (643)
                      ++++|||++|.||+++|+++.+.+.
T Consensus       164 ~~~~~Sa~~g~gv~~l~~~l~~~~~  188 (199)
T 4bas_A          164 VIFASNGLKGTGVHEGFSWLQETAS  188 (199)
T ss_dssp             EEEECBTTTTBTHHHHHHHHHHHHH
T ss_pred             EEEEeeCCCccCHHHHHHHHHHHHH
Confidence            6899999999999999999998765

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.89  E-value=7.9e-23  Score=189.95  Aligned_cols=165  Identities=19%  Similarity=0.335  Sum_probs=133.0

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i  501 (643)
                      +.+||+++|++|||||||+|+|++..+...+.+|....+. ..+...+....+.+||++|++.+..+  ...++..+|++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~--~~~~~~~~~~~   78 (172)
T 2erx_A            2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSHQFPAM--QRLSISKGHAF   78 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEETTEEEEEEEEECCSCSSCHHH--HHHHHHHCSEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE-EEEEECCEEEEEEEEECCCchhhHHH--HHHhcccCCEE
Confidence            3589999999999999999999998887666676665443 33445545567889999999888776  67788999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHH
Q 006490          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNN  579 (643)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~  579 (643)
                      ++|+|++++.+++.+..|+..+.+..... .+.|+++|+||+|+...+.. ......++...+++ ++++||++| |+++
T Consensus        79 i~v~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~  156 (172)
T 2erx_A           79 ILVYSITSRQSLEELKPIYEQICEIKGDV-ESIPIMLVGNKCDESPSREVQSSEAEALARTWKCA-FMETSAKLNHNVKE  156 (172)
T ss_dssp             EEEEETTCHHHHHTTHHHHHHHHHHHC----CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCE-EEECBTTTTBSHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHHhCCC-CCCCEEEEEEccccccccccCHHHHHHHHHHhCCe-EEEecCCCCcCHHH
Confidence            99999999999998888888777653211 16899999999999765433 55677888888876 999999999 9999


Q ss_pred             HHHHHHHHHhCC
Q 006490          580 VFSRIIWAAEHP  591 (643)
Q Consensus       580 l~~~l~~~~~~~  591 (643)
                      +|++|.+.+..+
T Consensus       157 l~~~l~~~~~~~  168 (172)
T 2erx_A          157 LFQELLNLEKRR  168 (172)
T ss_dssp             HHHHHHHTCCSS
T ss_pred             HHHHHHHHHhhh
Confidence            999999877543

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.89  E-value=6.6e-23  Score=190.18  Aligned_cols=160  Identities=16%  Similarity=0.274  Sum_probs=125.0

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEE
Q 006490           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (643)
Q Consensus        11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (643)
                      ..+||+|+|++|||||||+|+|++..+.....++.+...  ....+....+.+.+|||||.+.+...+..+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1g16_A            2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (170)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred             CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence            358999999999999999999999887555333333222  233444556789999999999888888999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHH
Q 006490           89 TYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV  167 (643)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  167 (643)
                      |||++++.+++.+. .|+..+.... .++|+++|+||+|+.. ...  ..+....+++.++  .+++++||++|.|++++
T Consensus        82 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~-~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gv~~l  155 (170)
T 1g16_A           82 VYDITDERTFTNIK-QWFKTVNEHANDEAQLLLVGNKSDMET-RVV--TADQGEALAKELG--IPFIESSAKNDDNVNEI  155 (170)
T ss_dssp             EEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCTT-CCS--CHHHHHHHHHHHT--CCEEECBTTTTBSHHHH
T ss_pred             EEECCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECccCCc-Ccc--CHHHHHHHHHHcC--CeEEEEECCCCCCHHHH
Confidence            99999999998887 5888887654 5899999999999943 222  3344566777776  37999999999999999


Q ss_pred             HHHHHHHHh
Q 006490          168 FYYAQKAVL  176 (643)
Q Consensus       168 ~~~i~~~~~  176 (643)
                      ++++.+.+.
T Consensus       156 ~~~l~~~~~  164 (170)
T 1g16_A          156 FFTLAKLIQ  164 (170)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988765

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.89  E-value=9.9e-23  Score=193.04  Aligned_cols=163  Identities=20%  Similarity=0.311  Sum_probs=120.1

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEE
Q 006490            8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV   86 (643)
Q Consensus         8 ~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i   86 (643)
                      ..++.+||+++|++|||||||+|+|++..+.....++.+... ....+....+.+.+|||||.+.+...+..+++.+|++
T Consensus        17 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   96 (190)
T 3con_A           17 QGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGF   96 (190)
T ss_dssp             --CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEE
T ss_pred             cccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEE
Confidence            356679999999999999999999999887666554333222 3334445567899999999998888888999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHhcC--CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCCh
Q 006490           87 VLTYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQV  164 (643)
Q Consensus        87 l~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  164 (643)
                      ++|||+++..+++.+. .|...+....  .++|+++|+||+|+... ..  ..+....+.+.++  .+++++||++|.|+
T Consensus        97 i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~-~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi  170 (190)
T 3con_A           97 LCVFAINNSKSFADIN-LYREQIKRVKDSDDVPMVLVGNKCDLPTR-TV--DTKQAHELAKSYG--IPFIETSAKTRQGV  170 (190)
T ss_dssp             EEEEETTCHHHHHHHH-HHHHHHHHHHTCSCCCEEEEEECTTCSCC-CS--CHHHHHHHHHHHT--CCEEECCTTTCTTH
T ss_pred             EEEEECcCHHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECCcCCcc-cC--CHHHHHHHHHHcC--CeEEEEeCCCCCCH
Confidence            9999999999999887 5888886643  37999999999998762 22  3345566777766  26999999999999


Q ss_pred             hHHHHHHHHHHh
Q 006490          165 PDVFYYAQKAVL  176 (643)
Q Consensus       165 ~~l~~~i~~~~~  176 (643)
                      +++++++.+.+.
T Consensus       171 ~~l~~~l~~~~~  182 (190)
T 3con_A          171 EDAFYTLVREIR  182 (190)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988764

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.89  E-value=8.5e-23  Score=194.16  Aligned_cols=163  Identities=18%  Similarity=0.250  Sum_probs=131.2

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEE
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV   86 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i   86 (643)
                      ..+.+||+|+|++|||||||+|+|++..+.....++.+.+.  ....+....+.+.+|||||++.+...+..+++.+|++
T Consensus        12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i   91 (195)
T 1x3s_A           12 VLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGV   91 (195)
T ss_dssp             EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence            34568999999999999999999999987665444443332  3334455678899999999999888899999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHhcC--CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCCh
Q 006490           87 VLTYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQV  164 (643)
Q Consensus        87 l~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  164 (643)
                      |+|||++++.+++.+. .|+..+....  .++|+++|+||+|+... ..  ..+....+...++  .+++++||++|.||
T Consensus        92 i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~-~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi  165 (195)
T 1x3s_A           92 ILVYDVTRRDTFVKLD-NWLNELETYCTRNDIVNMLVGNKIDKENR-EV--DRNEGLKFARKHS--MLFIEASAKTCDGV  165 (195)
T ss_dssp             EEEEETTCHHHHHTHH-HHHHHHTTCCSCSCCEEEEEEECTTSSSC-CS--CHHHHHHHHHHTT--CEEEECCTTTCTTH
T ss_pred             EEEEECcCHHHHHHHH-HHHHHHHHhcCcCCCcEEEEEECCcCccc-cc--CHHHHHHHHHHcC--CEEEEecCCCCCCH
Confidence            9999999999999888 5888887653  47999999999999532 22  2334456666665  36999999999999


Q ss_pred             hHHHHHHHHHHhC
Q 006490          165 PDVFYYAQKAVLH  177 (643)
Q Consensus       165 ~~l~~~i~~~~~~  177 (643)
                      +++|+++.+.+..
T Consensus       166 ~~l~~~l~~~~~~  178 (195)
T 1x3s_A          166 QCAFEELVEKIIQ  178 (195)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998764

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.89  E-value=1.2e-22  Score=193.80  Aligned_cols=169  Identities=17%  Similarity=0.323  Sum_probs=137.5

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (643)
                      ...++|+|+|.+|||||||+|+|++..+...+.+|....+. ..+...+....+.+||++|++.+..+  +..++..+|+
T Consensus         6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~d~   82 (199)
T 2gf0_A            6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAM--QRLSISKGHA   82 (199)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGGSCHHH--HHHHHHHCSE
T ss_pred             CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEECCEEEEEEEEeCCChHHhHHH--HHHhhccCCE
Confidence            35689999999999999999999999887777677665443 33445555667889999999888776  6778899999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC-CHHH
Q 006490          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNN  579 (643)
Q Consensus       501 illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g-~i~~  579 (643)
                      +++|||++++.+++.+..|+..+....... .+.|+++|+||+|+.......+....+++.+++. ++++||++| |+++
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~  160 (199)
T 2gf0_A           83 FILVFSVTSKQSLEELGPIYKLIVQIKGSV-EDIPVMLVGNKCDETQREVDTREAQAVAQEWKCA-FMETSAKMNYNVKE  160 (199)
T ss_dssp             EEEEEETTCHHHHHTTHHHHHHHHHHHSCG-GGSCEEEEEECTTCSSCSSCHHHHHHHHHHHTCE-EEECBTTTTBSHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccCCccccCHHHHHHHHHHhCCe-EEEEecCCCCCHHH
Confidence            999999999999998888887776543210 1689999999999987544567778888889986 999999999 9999


Q ss_pred             HHHHHHHHHhCCCCC
Q 006490          580 VFSRIIWAAEHPHLN  594 (643)
Q Consensus       580 l~~~l~~~~~~~~~~  594 (643)
                      +|++|.+.+......
T Consensus       161 l~~~l~~~~~~~~~~  175 (199)
T 2gf0_A          161 LFQELLTLETRRNMS  175 (199)
T ss_dssp             HHHHHHHHCSSSCEE
T ss_pred             HHHHHHHHHhhhhcc
Confidence            999999988655433

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.89  E-value=4.2e-23  Score=198.47  Aligned_cols=166  Identities=21%  Similarity=0.246  Sum_probs=104.4

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcC--CCCCCCCCCcccceEEEEEEcCCC--cEEEEEEecCCchhhhhhhccHHhhc
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLER--PFSENYAPTTGEQYAVNVVDQPGG--NKKTLILQEIPEEGVKKILSNKEALA  496 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~--~~~~~~~~t~~~~~~~~~v~~~g~--~~~~~i~d~~g~~~~~~~~~~~~~~~  496 (643)
                      ...+||+|+|.+|||||||+|+|++.  .+...+.+|++.++....+..++.  ...+.+||++|++.+..+  +..+++
T Consensus        18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~   95 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQ--ISQYWN   95 (208)
T ss_dssp             EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHH--HSTTCC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHH--HHHHHh
Confidence            45689999999999999999999998  666666677776677777888755  678899999999888777  677889


Q ss_pred             cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC-cccc-HHHHHHHHHHhCCCCcEEeeecc
Q 006490          497 SCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP-YTMA-VQDSARVTQELGIEPPIPVSMKS  574 (643)
Q Consensus       497 ~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~-~~~~-~~~~~~~~~~~~~~~~~~vSa~~  574 (643)
                      .+|++++|||++++.+|+.+..|+..+.........+.|+++|+||+|+.. .+.. .+....+++.+++. ++++||++
T Consensus        96 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~  174 (208)
T 2yc2_C           96 GVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLD-FFDVSANP  174 (208)
T ss_dssp             CCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCE-EEECCC--
T ss_pred             hCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCE-EEEeccCC
Confidence            999999999999999999999999999876541001799999999999986 4433 67888899999976 99999999


Q ss_pred             -C-CHHHHHHHHHHHHh
Q 006490          575 -K-DLNNVFSRIIWAAE  589 (643)
Q Consensus       575 -g-~i~~l~~~l~~~~~  589 (643)
                       | |++++|++|.+.+.
T Consensus       175 ~~~gi~~l~~~i~~~~~  191 (208)
T 2yc2_C          175 PGKDADAPFLSIATTFY  191 (208)
T ss_dssp             -----CHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHH
Confidence             9 99999999999775

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.89  E-value=3.2e-23  Score=197.50  Aligned_cols=169  Identities=16%  Similarity=0.108  Sum_probs=124.6

Q ss_pred             CCCCCCCCCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC-----------CCCCee--eCC-cccCCceeEEEEeC
Q 006490            1 MPGGSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPP-----------VHAPTR--LPP-DFYPDRVPVTIIDT   66 (643)
Q Consensus         1 m~~~~~~~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~-----------~~~~~~--~~~-~~~~~~~~~~i~Dt   66 (643)
                      |+.+........+||+|+|++|||||||++.+.+. +...+.+           +.+...  ... .++...+.+.+|||
T Consensus         3 m~~~~~~~~~~~~ki~vvG~~~~GKssL~~~l~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt   81 (198)
T 3t1o_A            3 MSTINFANREINFKIVYYGPGLSGKTTNLKWIYSK-VPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTV   81 (198)
T ss_dssp             -CEEETTTTEEEEEEEEECSTTSSHHHHHHHHHHT-SCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEEC
T ss_pred             ccccchhccccccEEEEECCCCCCHHHHHHHHHhh-ccccccccccccccccccceeeeecccccccccCCceEEEEEeC
Confidence            33333445566799999999999999999766654 3333211           111111  112 44566788999999


Q ss_pred             CCCCcchhhhHHhhccCCEEEEEEECC------CcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhh
Q 006490           67 SSSLENKGKLNEELKRADAVVLTYACN------QQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVM  140 (643)
Q Consensus        67 ~G~~~~~~~~~~~~~~ad~il~v~d~~------~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~  140 (643)
                      ||++.+...+..+++.+|++|+|||++      +..+++.+. .|+..++....++|+++|+||+|+...  .  ..+.+
T Consensus        82 ~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~-~~l~~~~~~~~~~piilv~NK~Dl~~~--~--~~~~~  156 (198)
T 3t1o_A           82 PGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMR-ENLAEYGLTLDDVPIVIQVNKRDLPDA--L--PVEMV  156 (198)
T ss_dssp             CSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHH-HHHHHTTCCTTSSCEEEEEECTTSTTC--C--CHHHH
T ss_pred             CChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHH-HHHHhhccccCCCCEEEEEEchhcccc--c--CHHHH
Confidence            999999999999999999999999999      445666665 477766555568999999999999764  2  23445


Q ss_pred             hHHHHhhcccceEEEeCcccCCChhHHHHHHHHHHh
Q 006490          141 GPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVL  176 (643)
Q Consensus       141 ~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~  176 (643)
                      ..++..++. .+++++||++|.||+++|+++.+.+.
T Consensus       157 ~~~~~~~~~-~~~~~~Sa~~~~gv~~l~~~l~~~i~  191 (198)
T 3t1o_A          157 RAVVDPEGK-FPVLEAVATEGKGVFETLKEVSRLVL  191 (198)
T ss_dssp             HHHHCTTCC-SCEEECBGGGTBTHHHHHHHHHHHHH
T ss_pred             HHHHHhcCC-ceEEEEecCCCcCHHHHHHHHHHHHH
Confidence            666666652 26999999999999999999988764

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.89  E-value=1.6e-24  Score=207.17  Aligned_cols=164  Identities=25%  Similarity=0.405  Sum_probs=131.5

Q ss_pred             cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCC
Q 006490          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (643)
Q Consensus       420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad  499 (643)
                      ....+||+|+|.+|||||||+|+|++..+...+.++++.++....+...+....+.+||++|++.+..+  +..+++.+|
T Consensus        30 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d  107 (199)
T 3l0i_B           30 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI--TSSYYRGAH  107 (199)
T ss_dssp             CSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCC--SCC--CCCS
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHH--HHHHhhcCC
Confidence            345799999999999999999999999887777677777787888888866678889999999888776  677889999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CH
Q 006490          500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DL  577 (643)
Q Consensus       500 ~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i  577 (643)
                      ++++|||++++.+|+.+..|+..+......   +.|+++|+||+|+...+.. .+....+++.++++ ++++||++| |+
T Consensus       108 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~vSA~~g~gv  183 (199)
T 3l0i_B          108 GIIVVYDVTDQESFNNVKQWLQEIDRYASE---NVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIP-FLETSAKNATNV  183 (199)
T ss_dssp             EEEECC-CCCSHHHHHHHHHHHHHHSCC-C---CSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCC-BCCCCC---HHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhccC---CCCEEEEEECccCCccccCCHHHHHHHHHHcCCe-EEEEECCCCCCH
Confidence            999999999999999999999988765442   7899999999999765443 45677888888886 999999999 99


Q ss_pred             HHHHHHHHHHHh
Q 006490          578 NNVFSRIIWAAE  589 (643)
Q Consensus       578 ~~l~~~l~~~~~  589 (643)
                      +++|++|.+.+.
T Consensus       184 ~~l~~~l~~~l~  195 (199)
T 3l0i_B          184 EQSFMTMAAEIK  195 (199)
T ss_dssp             HHHHHHHTTTTT
T ss_pred             HHHHHHHHHHHH
Confidence            999999987664

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.89  E-value=1.8e-22  Score=192.36  Aligned_cols=162  Identities=20%  Similarity=0.281  Sum_probs=135.0

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (643)
                      ...+||+|+|.+|||||||+|+|++..+...+.+|++..+. ..+...+....+.+||++|++. ..+  +..+++.+|+
T Consensus        26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~-~~~--~~~~~~~~d~  101 (196)
T 2atv_A           26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYR-HQATIDDEVVSMEILDTAGQED-TIQ--REGHMRWGEG  101 (196)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCCCCC-CHH--HHHHHHHCSE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEE-EEEEECCEEEEEEEEECCCCCc-ccc--hhhhhccCCE
Confidence            45689999999999999999999999988888787776553 3355565667788999999877 444  6778899999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC--CH
Q 006490          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK--DL  577 (643)
Q Consensus       501 illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g--~i  577 (643)
                      +++|||++++.+++.+..|+..+.......  ++|+++|+||+|+...+.. .++...+++.+++. +++|||++|  |+
T Consensus       102 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~--~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~g~~gi  178 (196)
T 2atv_A          102 FVLVYDITDRGSFEEVLPLKNILDEIKKPK--NVTLILVGNKADLDHSRQVSTEEGEKLATELACA-FYECSACTGEGNI  178 (196)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHTTS--CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSE-EEECCTTTCTTCH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhhCCC--CCcEEEEEECcccccccccCHHHHHHHHHHhCCe-EEEECCCcCCcCH
Confidence            999999999999999999998887754433  7999999999999764433 67788888888886 999999998  79


Q ss_pred             HHHHHHHHHHHh
Q 006490          578 NNVFSRIIWAAE  589 (643)
Q Consensus       578 ~~l~~~l~~~~~  589 (643)
                      +++|++|.+.+.
T Consensus       179 ~~l~~~l~~~i~  190 (196)
T 2atv_A          179 TEIFYELCREVR  190 (196)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998774

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.89  E-value=8.1e-23  Score=199.03  Aligned_cols=165  Identities=19%  Similarity=0.218  Sum_probs=126.3

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEE
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV   86 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i   86 (643)
                      ....+||+|+|++|||||||+++|++..+.....++.+...  ....+....+.+.+|||||++.+...+..+++.+|++
T Consensus        10 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v   89 (223)
T 3cpj_B           10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGA   89 (223)
T ss_dssp             CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEE
T ss_pred             CCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEE
Confidence            35568999999999999999999999987655433333222  2233444458899999999999988999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChh
Q 006490           87 VLTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP  165 (643)
Q Consensus        87 l~v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  165 (643)
                      |+|||++++.+++.+. .|+..+... ..++|++||+||+|+...+.+ . .+....+...++  .+++++||++|.||+
T Consensus        90 ilV~D~~~~~s~~~~~-~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v-~-~~~~~~~~~~~~--~~~~~~Sa~~~~gi~  164 (223)
T 3cpj_B           90 LIVYDISKSSSYENCN-HWLSELRENADDNVAVGLIGNKSDLAHLRAV-P-TEESKTFAQENQ--LLFTETSALNSENVD  164 (223)
T ss_dssp             EEEEC-CCHHHHHHHH-HHHHHHHHHCC--CEEEEEECCGGGGGGCCS-C-HHHHHHHHHHTT--CEEEECCCC-CCCHH
T ss_pred             EEEEeCCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECccccccccc-C-HHHHHHHHHHcC--CEEEEEeCCCCCCHH
Confidence            9999999999999987 588888765 357999999999999765444 2 334556666665  379999999999999


Q ss_pred             HHHHHHHHHHhCC
Q 006490          166 DVFYYAQKAVLHP  178 (643)
Q Consensus       166 ~l~~~i~~~~~~~  178 (643)
                      ++|+++.+.+...
T Consensus       165 ~l~~~l~~~i~~~  177 (223)
T 3cpj_B          165 KAFEELINTIYQK  177 (223)
T ss_dssp             HHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988654

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.89  E-value=5.3e-23  Score=196.76  Aligned_cols=163  Identities=21%  Similarity=0.256  Sum_probs=122.1

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEE
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV   86 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i   86 (643)
                      ....+||+|+|++|||||||+|+|++..+.....++.+...  ....+....+.+.+|||||++.+...+..+++.+|++
T Consensus        22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~  101 (200)
T 2o52_A           22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA  101 (200)
T ss_dssp             CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEE
Confidence            35568999999999999999999999887655433333222  2233444458899999999988888888999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChh
Q 006490           87 VLTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP  165 (643)
Q Consensus        87 l~v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  165 (643)
                      |+|||++++.+++.+. .|+..+... ..++|+++|+||+|+...+.+ . .+....++...+  .++++|||++|.||+
T Consensus       102 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v-~-~~~~~~~~~~~~--~~~~~~SA~~g~gi~  176 (200)
T 2o52_A          102 LLVYDITSRETYNSLA-AWLTDARTLASPNIVVILCGNKKDLDPEREV-T-FLEASRFAQENE--LMFLETSALTGENVE  176 (200)
T ss_dssp             EEEEETTCHHHHHTHH-HHHHHHHHHTCTTCEEEEEEECGGGGGGCCS-C-HHHHHHHHHHTT--CEEEEECTTTCTTHH
T ss_pred             EEEEECcCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECCCccccccc-C-HHHHHHHHHHcC--CEEEEEeCCCCCCHH
Confidence            9999999999999887 588887654 358999999999999754443 2 233455666655  379999999999999


Q ss_pred             HHHHHHHHHHh
Q 006490          166 DVFYYAQKAVL  176 (643)
Q Consensus       166 ~l~~~i~~~~~  176 (643)
                      ++|+++.+.+.
T Consensus       177 ~l~~~l~~~i~  187 (200)
T 2o52_A          177 EAFLKCARTIL  187 (200)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988764

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.89  E-value=2.6e-22  Score=186.45  Aligned_cols=161  Identities=13%  Similarity=0.138  Sum_probs=121.6

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEE
Q 006490            8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (643)
Q Consensus         8 ~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il   87 (643)
                      ...+.+||+++|++|||||||+|+|+++.+....|+ .+....  .+..++..+.+|||||++.+...+..+++.+|+++
T Consensus         3 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t-~~~~~~--~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   79 (171)
T 1upt_A            3 HMTREMRILILGLDGAGKTTILYRLQVGEVVTTIPT-IGFNVE--TVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVI   79 (171)
T ss_dssp             CCSSCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCC-SSEEEE--EEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred             CCCCccEEEEECCCCCCHHHHHHHHhcCCCCCcCCc-CccceE--EEEECCEEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence            345679999999999999999999999887654443 222222  23334789999999999998888999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCCCCCccchhhhhhhHH----HHhhcccceEEEeCcccC
Q 006490           88 LTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPI----MQQFREIETCVECSATTM  161 (643)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~Sa~~~  161 (643)
                      +|||++++.+++.... |+..+...  ..++|+++|+||+|+......   .+....+    ....+  .+++++||++|
T Consensus        80 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~--~~~~~~Sa~~~  153 (171)
T 1upt_A           80 YVVDSCDRDRIGISKS-ELVAMLEEEELRKAILVVFANKQDMEQAMTS---SEMANSLGLPALKDRK--WQIFKTSATKG  153 (171)
T ss_dssp             EEEETTCCTTHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTCCCH---HHHHHHHTGGGCTTSC--EEEEECCTTTC
T ss_pred             EEEECCCHHHHHHHHH-HHHHHHhchhhCCCEEEEEEECCCCcCCCCH---HHHHHHhCchhccCCc--eEEEECcCCCC
Confidence            9999999999998875 55554332  258999999999999765321   1111111    11111  26899999999


Q ss_pred             CChhHHHHHHHHHHhC
Q 006490          162 IQVPDVFYYAQKAVLH  177 (643)
Q Consensus       162 ~gi~~l~~~i~~~~~~  177 (643)
                      .|++++++++.+.+..
T Consensus       154 ~gi~~l~~~l~~~i~~  169 (171)
T 1upt_A          154 TGLDEAMEWLVETLKS  169 (171)
T ss_dssp             TTHHHHHHHHHHHHHT
T ss_pred             cCHHHHHHHHHHHHhh
Confidence            9999999999987653

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.89  E-value=1.2e-22  Score=195.30  Aligned_cols=163  Identities=20%  Similarity=0.248  Sum_probs=127.0

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEE
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV   86 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i   86 (643)
                      ....+||+|+|++|||||||+|+|++..+...+.++.+...  ....+....+.+.+|||||++.+...+..+++.+|++
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   84 (207)
T 1vg8_A            5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC   84 (207)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence            45679999999999999999999999987666554443332  2334445568899999999998888888999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHhcC-----CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccC
Q 006490           87 VLTYACNQQSTLSRLSSYWLPELRRLE-----IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM  161 (643)
Q Consensus        87 l~v~d~~~~~s~~~~~~~~~~~l~~~~-----~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  161 (643)
                      |+|||++++.+++.+. .|...+....     .++|+++|+||+|+.. ...  ..+....+...... .+++++||++|
T Consensus        85 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~--~~~~~~~~~~~~~~-~~~~~~Sa~~g  159 (207)
T 1vg8_A           85 VLVFDVTAPNTFKTLD-SWRDEFLIQASPRDPENFPFVVLGNKIDLEN-RQV--ATKRAQAWCYSKNN-IPYFETSAKEA  159 (207)
T ss_dssp             EEEEETTCHHHHHTHH-HHHHHHHHHHCCSSGGGSCEEEEEECTTSSC-CCS--CHHHHHHHHHHTTS-CCEEECBTTTT
T ss_pred             EEEEECCCHHHHHHHH-HHHHHHHHhcccccCCCCcEEEEEECCCCcc-ccc--CHHHHHHHHHhcCC-ceEEEEeCCCC
Confidence            9999999999999887 5887775532     4789999999999973 222  22334555543333 36999999999


Q ss_pred             CChhHHHHHHHHHHh
Q 006490          162 IQVPDVFYYAQKAVL  176 (643)
Q Consensus       162 ~gi~~l~~~i~~~~~  176 (643)
                      .|++++|+++.+.+.
T Consensus       160 ~gi~~l~~~l~~~~~  174 (207)
T 1vg8_A          160 INVEQAFQTIARNAL  174 (207)
T ss_dssp             BSHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH
Confidence            999999999998765

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.89  E-value=4.5e-23  Score=200.07  Aligned_cols=169  Identities=15%  Similarity=0.240  Sum_probs=127.9

Q ss_pred             CCCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCccc---CCceeEEEEeCCCCCcchhhhHHhhccC
Q 006490            7 SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFY---PDRVPVTIIDTSSSLENKGKLNEELKRA   83 (643)
Q Consensus         7 ~~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~Dt~G~~~~~~~~~~~~~~a   83 (643)
                      ......+||+|+|++|||||||+|+|++..+...+.++.+.......+.   ...+.+.+|||||++.+......+++.+
T Consensus         6 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   85 (218)
T 4djt_A            6 ERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGA   85 (218)
T ss_dssp             ----CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTC
T ss_pred             ccccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcC
Confidence            3456679999999999999999999998887655444444333222221   2237899999999998888889999999


Q ss_pred             CEEEEEEECCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCC
Q 006490           84 DAVVLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMI  162 (643)
Q Consensus        84 d~il~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  162 (643)
                      |++|+|||++++.+++.+. .|+..+.... .++|+++|+||+|+.....+  ..+....+....+  .++++|||++|.
T Consensus        86 d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~g~  160 (218)
T 4djt_A           86 SGAILFFDVTSRITCQNLA-RWVKEFQAVVGNEAPIVVCANKIDIKNRQKI--SKKLVMEVLKGKN--YEYFEISAKTAH  160 (218)
T ss_dssp             SEEEEEEETTCHHHHHTHH-HHHHHHHHHHCSSSCEEEEEECTTCC----C--CHHHHHHHTTTCC--CEEEEEBTTTTB
T ss_pred             CEEEEEEeCCCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECCCCcccccc--CHHHHHHHHHHcC--CcEEEEecCCCC
Confidence            9999999999999999987 5888887653 35899999999999765444  2333445555544  369999999999


Q ss_pred             ChhHHHHHHHHHHhCCCC
Q 006490          163 QVPDVFYYAQKAVLHPTA  180 (643)
Q Consensus       163 gi~~l~~~i~~~~~~~~~  180 (643)
                      |++++|+++.+.+.....
T Consensus       161 gv~~l~~~l~~~~~~~~~  178 (218)
T 4djt_A          161 NFGLPFLHLARIFTGRPD  178 (218)
T ss_dssp             TTTHHHHHHHHHHHCCTT
T ss_pred             CHHHHHHHHHHHHhcccc
Confidence            999999999998865543

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.89  E-value=1.3e-22  Score=191.97  Aligned_cols=162  Identities=15%  Similarity=0.191  Sum_probs=122.4

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEE
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (643)
                      .++.+||+|+|++|||||||+|+|++..+.....++.+....  .+...++.+.+|||||++.+...+..+++.+|++|+
T Consensus        19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   96 (188)
T 1zd9_A           19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVY   96 (188)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE--EEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEE
Confidence            456799999999999999999999998876554443333322  244567899999999999888889999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhh--cccceEEEeCcccCCCh
Q 006490           89 TYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF--REIETCVECSATTMIQV  164 (643)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~gi  164 (643)
                      |||++++.+++.+.. |+..+...  ..++|+++|+||+|+......   .+..+.+....  ....++++|||++|.||
T Consensus        97 v~D~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv  172 (188)
T 1zd9_A           97 MVDAADQEKIEASKN-ELHNLLDKPQLQGIPVLVLGNKRDLPGALDE---KELIEKMNLSAIQDREICCYSISCKEKDNI  172 (188)
T ss_dssp             EEETTCGGGHHHHHH-HHHHHHTCGGGTTCCEEEEEECTTSTTCCCH---HHHHHHTTGGGCCSSCEEEEECCTTTCTTH
T ss_pred             EEECCCHHHHHHHHH-HHHHHHhCcccCCCCEEEEEECCCCccCCCH---HHHHHHhChhhhccCCeeEEEEECCCCCCH
Confidence            999999999999885 55555432  258999999999999764221   11111111110  01126899999999999


Q ss_pred             hHHHHHHHHHHh
Q 006490          165 PDVFYYAQKAVL  176 (643)
Q Consensus       165 ~~l~~~i~~~~~  176 (643)
                      +++|+++.+.+.
T Consensus       173 ~~l~~~l~~~~~  184 (188)
T 1zd9_A          173 DITLQWLIQHSK  184 (188)
T ss_dssp             HHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHH
Confidence            999999987653

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.89  E-value=5.2e-23  Score=200.09  Aligned_cols=163  Identities=18%  Similarity=0.280  Sum_probs=138.3

Q ss_pred             cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCC
Q 006490          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (643)
Q Consensus       420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad  499 (643)
                      ....+||+|+|.+|||||||+|+|+.+.+...+.+|.+.+.....+...+....+.+||++|++.+..+  +..+++.+|
T Consensus        12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~~   89 (221)
T 3gj0_A           12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGL--RDGYYIQAQ   89 (221)
T ss_dssp             CCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCC--CHHHHTTCC
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHH--HHHHHhcCC
Confidence            345699999999999999999998877766666677776666666777766778889999999888777  788899999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC-CHH
Q 006490          500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLN  578 (643)
Q Consensus       500 ~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g-~i~  578 (643)
                      ++++|||++++.+++.+..|+..+.....    ++|+++|+||+|+.+.... .....+++..++. +++|||++| |++
T Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~p~ilv~nK~Dl~~~~~~-~~~~~~~~~~~~~-~~~~Sa~~~~gi~  163 (221)
T 3gj0_A           90 CAIIMFDVTSRVTYKNVPNWHRDLVRVCE----NIPIVLCGNKVDIKDRKVK-AKSIVFHRKKNLQ-YYDISAKSNYNFE  163 (221)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHST----TCCEEEEEECTTSSSCSSC-GGGCCHHHHHTCE-EEECBGGGTBTTT
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhCC----CCCEEEEEECCcccccccc-HHHHHHHHHcCCE-EEEEeCCCCCCHH
Confidence            99999999999999999999999988754    7999999999999764433 3556677888886 999999999 999


Q ss_pred             HHHHHHHHHHhC
Q 006490          579 NVFSRIIWAAEH  590 (643)
Q Consensus       579 ~l~~~l~~~~~~  590 (643)
                      ++|++|.+.+..
T Consensus       164 ~l~~~l~~~l~~  175 (221)
T 3gj0_A          164 KPFLWLARKLIG  175 (221)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHh
Confidence            999999998753

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.89  E-value=2.1e-22  Score=185.68  Aligned_cols=157  Identities=13%  Similarity=0.134  Sum_probs=117.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEEC
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYAC   92 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~   92 (643)
                      +||+++|++|||||||+|+|+++.+....|+. +...  ..+...++.+.+|||||++.+...+..+++.+|++++|||+
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~~~t~-~~~~--~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~   77 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTI-GFNV--ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS   77 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCS-SCCE--EEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEET
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCcccCcC-ceeE--EEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEEC
Confidence            58999999999999999999998876544432 2211  23445678999999999999888888999999999999999


Q ss_pred             CCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhh-c-ccceEEEeCcccCCChhHHH
Q 006490           93 NQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF-R-EIETCVECSATTMIQVPDVF  168 (643)
Q Consensus        93 ~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~Sa~~~~gi~~l~  168 (643)
                      +++.+++.+.. |+..+...  ..+.|+++|+||+|+......   .+....+.... . ...++++|||++|.|++++|
T Consensus        78 ~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  153 (164)
T 1r8s_A           78 NDRERVNEARE-ELMRMLAEDELRDAVLLVFANKQDLPNAMNA---AEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL  153 (164)
T ss_dssp             TCGGGHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTCCCH---HHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred             CCHHHHHHHHH-HHHHHHhchhhcCCeEEEEEECcCCcCCCCH---HHHHHHhCcccccCccEEEEEcccCCCcCHHHHH
Confidence            99999998874 66665432  358999999999999764221   11111111110 0 11258999999999999999


Q ss_pred             HHHHHHHh
Q 006490          169 YYAQKAVL  176 (643)
Q Consensus       169 ~~i~~~~~  176 (643)
                      +++.+.+.
T Consensus       154 ~~l~~~i~  161 (164)
T 1r8s_A          154 DWLSNQLR  161 (164)
T ss_dssp             HHHHHHC-
T ss_pred             HHHHHHHh
Confidence            99988753

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.89  E-value=7.6e-23  Score=192.34  Aligned_cols=162  Identities=12%  Similarity=0.112  Sum_probs=115.5

Q ss_pred             CCCCCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCC
Q 006490            5 SGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRAD   84 (643)
Q Consensus         5 ~~~~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad   84 (643)
                      ......+.+||+|+|++|||||||+|+|++..+. ...++.+....  .+..+++.+.+|||||++.+...+..+++.+|
T Consensus        14 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~--~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   90 (181)
T 2h17_A           14 LVPRGSQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNVE--EIVINNTRFLMWDIGGQESLRSSWNTYYTNTE   90 (181)
T ss_dssp             -------CEEEEEEEETTSSHHHHHHHHHTTSCE-EEECCSSSSCE--EEEETTEEEEEEEESSSGGGTCGGGGGGTTCC
T ss_pred             ccCCCCceeEEEEECCCCCCHHHHHHHHhcCCCC-ccCCcCceeeE--EEEECCEEEEEEECCCCHhHHHHHHHHhccCC
Confidence            3344567799999999999999999999998872 22222222222  23335689999999999999888999999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCCCCCccchhhhhhhHHHHh-hc-ccceEEEeCccc
Q 006490           85 AVVLTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQ-FR-EIETCVECSATT  160 (643)
Q Consensus        85 ~il~v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~Sa~~  160 (643)
                      ++|+|||++++.+++.+.. |+..+...  ..++|+++|+||+|+......   ++..+.+... .. ...++++|||++
T Consensus        91 ~ii~v~D~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~i~~~~~~~~~~~~~~~~~~~Sa~~  166 (181)
T 2h17_A           91 FVIVVVDSTDRERISVTRE-ELYKMLAHEDLRKAGLLIFANKQDVKECMTV---AEISQFLKLTSIKDHQWHIQACCALT  166 (181)
T ss_dssp             EEEEEEETTCTTTHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTCCCH---HHHHHHTTGGGCCSSCEEEEECBTTT
T ss_pred             EEEEEEECCCHHHHHHHHH-HHHHHHhChhhCCCeEEEEEECCCcccCCCH---HHHHHHhCcccccCCceEEEEccCCC
Confidence            9999999999999999885 55555432  358999999999999764221   1111111111 11 112689999999


Q ss_pred             CCChhHHHHHHHH
Q 006490          161 MIQVPDVFYYAQK  173 (643)
Q Consensus       161 ~~gi~~l~~~i~~  173 (643)
                      |.|++++|+++.+
T Consensus       167 g~gi~~l~~~l~~  179 (181)
T 2h17_A          167 GEGLCQGLEWMMS  179 (181)
T ss_dssp             TBTHHHHHHHHHT
T ss_pred             CcCHHHHHHHHHh
Confidence            9999999998865

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.89  E-value=3.6e-22  Score=188.95  Aligned_cols=159  Identities=17%  Similarity=0.269  Sum_probs=125.2

Q ss_pred             ccCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccC
Q 006490          419 TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASC  498 (643)
Q Consensus       419 ~~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~a  498 (643)
                      ..+..+||+|+|.+|||||||+|+|++..+...+.+|.+..+.  .+..  ....+.+||++|++.+..+  +..+++.+
T Consensus        18 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~--~~~~~~~~   91 (188)
T 1zd9_A           18 GSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITK--GNVTIKLWDIGGQPRFRSM--WERYCRGV   91 (188)
T ss_dssp             -CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEE--TTEEEEEEEECCSHHHHTT--HHHHHTTC
T ss_pred             CCCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE--EEEe--CCEEEEEEECCCCHhHHHH--HHHHHccC
Confidence            3456799999999999999999999999887667677765543  2332  4577889999999988877  67888999


Q ss_pred             CEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCC-------CCcEEee
Q 006490          499 DVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGI-------EPPIPVS  571 (643)
Q Consensus       499 d~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~-------~~~~~vS  571 (643)
                      |++++|+|++++.+++.+..|+..+.......  +.|+++|+||+|+......    +++.+..+.       .++++||
T Consensus        92 d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~--~~piilv~NK~Dl~~~~~~----~~~~~~~~~~~~~~~~~~~~~~S  165 (188)
T 1zd9_A           92 SAIVYMVDAADQEKIEASKNELHNLLDKPQLQ--GIPVLVLGNKRDLPGALDE----KELIEKMNLSAIQDREICCYSIS  165 (188)
T ss_dssp             SEEEEEEETTCGGGHHHHHHHHHHHHTCGGGT--TCCEEEEEECTTSTTCCCH----HHHHHHTTGGGCCSSCEEEEECC
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHhCcccC--CCCEEEEEECCCCccCCCH----HHHHHHhChhhhccCCeeEEEEE
Confidence            99999999999999999999988876542222  7999999999999764221    223333321       1479999


Q ss_pred             eccC-CHHHHHHHHHHHHh
Q 006490          572 MKSK-DLNNVFSRIIWAAE  589 (643)
Q Consensus       572 a~~g-~i~~l~~~l~~~~~  589 (643)
                      |++| |++++|++|.+.+.
T Consensus       166 A~~g~gv~~l~~~l~~~~~  184 (188)
T 1zd9_A          166 CKEKDNIDITLQWLIQHSK  184 (188)
T ss_dssp             TTTCTTHHHHHHHHHHTCC
T ss_pred             CCCCCCHHHHHHHHHHHHH
Confidence            9999 99999999998765

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.88  E-value=2.5e-22  Score=193.87  Aligned_cols=162  Identities=15%  Similarity=0.266  Sum_probs=126.0

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEE
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV   86 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i   86 (643)
                      ....+||+|+|++|||||||+|+|++..+.....++.+...  ....+....+.+.+|||||++.+...+..+++.+|++
T Consensus        17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   96 (213)
T 3cph_A           17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGI   96 (213)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEE
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence            45579999999999999999999999887555333333222  2223334457899999999998888889999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChh
Q 006490           87 VLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP  165 (643)
Q Consensus        87 l~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  165 (643)
                      |+|||++++.+++.+. .|+..+.... .++|+++|+||+|+.. ...  ..+....++..++  .+++++||++|.||+
T Consensus        97 i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~-~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~  170 (213)
T 3cph_A           97 ILVYDVTDERTFTNIK-QWFKTVNEHANDEAQLLLVGNKSDMET-RVV--TADQGEALAKELG--IPFIESSAKNDDNVN  170 (213)
T ss_dssp             EEEEETTCHHHHHTHH-HHHHHHHHHTTTCSEEEEEEECTTCSS-CCS--CHHHHHHHHHHHT--CCEEECBTTTTBSSH
T ss_pred             EEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECCCCcc-ccc--CHHHHHHHHHHcC--CEEEEEeCCCCCCHH
Confidence            9999999999998887 5888887654 4799999999999943 222  2344566666665  369999999999999


Q ss_pred             HHHHHHHHHHh
Q 006490          166 DVFYYAQKAVL  176 (643)
Q Consensus       166 ~l~~~i~~~~~  176 (643)
                      ++|+++.+.+.
T Consensus       171 ~l~~~l~~~~~  181 (213)
T 3cph_A          171 EIFFTLAKLIQ  181 (213)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999887653

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.88  E-value=1.5e-22  Score=193.24  Aligned_cols=164  Identities=19%  Similarity=0.239  Sum_probs=128.9

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-eeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEE
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il   87 (643)
                      ....+||+|+|++|||||||+|+|++..+...+.++.+. +.....++...+.+.+|||||++.+...+..+++.+|++|
T Consensus         5 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   84 (199)
T 2gf0_A            5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI   84 (199)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred             CCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence            456799999999999999999999998876554333332 2233344555778999999999998888899999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHhc---CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCCh
Q 006490           88 LTYACNQQSTLSRLSSYWLPELRRL---EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQV  164 (643)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~l~~~---~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  164 (643)
                      +|||++++.+++.+.. |+..+...   .+++|+++|+||+|+... ..  ..+....+...++  .+++++||++|.|+
T Consensus        85 ~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~piilv~nK~Dl~~~-~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi  158 (199)
T 2gf0_A           85 LVFSVTSKQSLEELGP-IYKLIVQIKGSVEDIPVMLVGNKCDETQR-EV--DTREAQAVAQEWK--CAFMETSAKMNYNV  158 (199)
T ss_dssp             EEEETTCHHHHHTTHH-HHHHHHHHHSCGGGSCEEEEEECTTCSSC-SS--CHHHHHHHHHHHT--CEEEECBTTTTBSH
T ss_pred             EEEECcCHHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccCCcc-cc--CHHHHHHHHHHhC--CeEEEEecCCCCCH
Confidence            9999999999988874 76666543   247899999999999753 22  2334455666665  36999999999999


Q ss_pred             hHHHHHHHHHHhCC
Q 006490          165 PDVFYYAQKAVLHP  178 (643)
Q Consensus       165 ~~l~~~i~~~~~~~  178 (643)
                      +++++++.+.+...
T Consensus       159 ~~l~~~l~~~~~~~  172 (199)
T 2gf0_A          159 KELFQELLTLETRR  172 (199)
T ss_dssp             HHHHHHHHHHCSSS
T ss_pred             HHHHHHHHHHHhhh
Confidence            99999999877544

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.88  E-value=3.6e-23  Score=198.89  Aligned_cols=161  Identities=16%  Similarity=0.180  Sum_probs=96.6

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcC--CCCCCCCCCCCCee--eCCcccCC--ceeEEEEeCCCCCcchhhhHHhhccCC
Q 006490           11 TGVRVVVVGDRGTGKSSLIAAAATE--SVPEKVPPVHAPTR--LPPDFYPD--RVPVTIIDTSSSLENKGKLNEELKRAD   84 (643)
Q Consensus        11 ~~~kI~lvG~~~vGKSsL~n~l~~~--~~~~~~~~~~~~~~--~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~ad   84 (643)
                      ..+||+|+|++|||||||+|+|++.  .+...+.++.+...  ....+...  .+.+.+|||||++.+...+..+++.+|
T Consensus        19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   98 (208)
T 2yc2_C           19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVY   98 (208)
T ss_dssp             EEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCCC
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhCc
Confidence            4589999999999999999999998  66655554443212  22333343  678999999999988888889999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHHhcC----CCCcEEEEEecccCCC-CCccchhhhhhhHHHHhhcccceEEEeCcc
Q 006490           85 AVVLTYACNQQSTLSRLSSYWLPELRRLE----IKVPIIVAGCKLDLRG-DHNATSLEEVMGPIMQQFREIETCVECSAT  159 (643)
Q Consensus        85 ~il~v~d~~~~~s~~~~~~~~~~~l~~~~----~~~pvilv~NK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  159 (643)
                      ++|+|||++++.+++.+. .|+..+....    .++|+++|+||+|+.. .+.+  ..+....+.+.++  .+++++||+
T Consensus        99 ~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v--~~~~~~~~~~~~~--~~~~~~Sa~  173 (208)
T 2yc2_C           99 YAILVFDVSSMESFESCK-AWFELLKSARPDRERPLRAVLVANKTDLPPQRHQV--RLDMAQDWATTNT--LDFFDVSAN  173 (208)
T ss_dssp             EEEEEEETTCHHHHHHHH-HHHHHHHHHCSCTTSCCEEEEEEECC-------CC--CHHHHHHHHHHTT--CEEEECCC-
T ss_pred             EEEEEEECCCHHHHHHHH-HHHHHHHHhhcccccCCcEEEEEECcccchhhccC--CHHHHHHHHHHcC--CEEEEeccC
Confidence            999999999999999988 5998887754    3899999999999976 4443  2344566777776  379999999


Q ss_pred             c-CCChhHHHHHHHHHHh
Q 006490          160 T-MIQVPDVFYYAQKAVL  176 (643)
Q Consensus       160 ~-~~gi~~l~~~i~~~~~  176 (643)
                      + |.|++++|+++.+.+.
T Consensus       174 ~~~~gi~~l~~~i~~~~~  191 (208)
T 2yc2_C          174 PPGKDADAPFLSIATTFY  191 (208)
T ss_dssp             ------CHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHH
Confidence            9 9999999999988764

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.88  E-value=1.6e-22  Score=193.07  Aligned_cols=157  Identities=18%  Similarity=0.263  Sum_probs=112.5

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v   89 (643)
                      .+.+||+++|++|||||||+++|+++.+.... ++.+.+.  ..+..+++.+.+|||||++.+...+..+++.+|++++|
T Consensus        23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~-~t~~~~~--~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v   99 (198)
T 1f6b_A           23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHV-PTLHPTS--EELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFL   99 (198)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSC--EEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhcCCCCccC-CCCCcee--EEEEECCEEEEEEECCCcHhhHHHHHHHHhcCCEEEEE
Confidence            45689999999999999999999998764333 2233322  23334458999999999999888899999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhc---------------ccce
Q 006490           90 YACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR---------------EIET  152 (643)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~---------------~~~~  152 (643)
                      ||++++.+++.+.. |+..+.+.  ..++|+++|+||+|+...  . .. +.+..+.....               ...+
T Consensus       100 ~D~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~--~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (198)
T 1f6b_A          100 VDCADHERLLESKE-ELDSLMTDETIANVPILILGNKIDRPEA--I-SE-ERLREMFGLYGQTTGKGSVSLKELNARPLE  174 (198)
T ss_dssp             EETTCGGGHHHHHH-HHHHHHTCGGGTTSCEEEEEECTTSTTC--C-CH-HHHHHHHTCTTTCCCSSCCCTTTCCSCCEE
T ss_pred             EECCCHHHHHHHHH-HHHHHHhCcccCCCcEEEEEECCCcccc--C-CH-HHHHHHhCcccccccccccccccccCceEE
Confidence            99999999999885 76666442  358999999999999752  2 22 22333322111               1236


Q ss_pred             EEEeCcccCCChhHHHHHHHHH
Q 006490          153 CVECSATTMIQVPDVFYYAQKA  174 (643)
Q Consensus       153 ~~~~Sa~~~~gi~~l~~~i~~~  174 (643)
                      +++|||++|.||+++|+++.+.
T Consensus       175 ~~~~SA~~g~gv~~l~~~l~~~  196 (198)
T 1f6b_A          175 VFMCSVLKRQGYGEGFRWMAQY  196 (198)
T ss_dssp             EEECBTTTTBSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            9999999999999999998754

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.88  E-value=2.5e-22  Score=189.82  Aligned_cols=161  Identities=17%  Similarity=0.192  Sum_probs=120.5

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (643)
                      +..+||+|+|.+|||||||+|+|+++.+. .+.||.+...  ..+...  ...+.+||++|++.+..+  +..+++.+|+
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~i~Dt~G~~~~~~~--~~~~~~~~d~   86 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNV--EEIVIN--NTRFLMWDIGGQESLRSS--WNTYYTNTEF   86 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSC--EEEEET--TEEEEEEECCC----CGG--GHHHHTTCCE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccce--EEEEEC--CEEEEEEECCCCHhHHHH--HHHHhcCCCE
Confidence            45689999999999999999999988876 4456665433  333333  377889999999888777  7788999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHH-----HhCCCCcEEeeeccC
Q 006490          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQ-----ELGIEPPIPVSMKSK  575 (643)
Q Consensus       501 illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~vSa~~g  575 (643)
                      +++|+|++++.+|+....|+..+.......  +.|+++|+||+|+..... .++..+...     ..++ ++++|||++|
T Consensus        87 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~piilv~NK~Dl~~~~~-~~~i~~~~~~~~~~~~~~-~~~~~Sa~~g  162 (187)
T 1zj6_A           87 VIVVVDSTDRERISVTREELYKMLAHEDLR--KAGLLIFANKQDVKECMT-VAEISQFLKLTSIKDHQW-HIQACCALTG  162 (187)
T ss_dssp             EEEEEETTCTTTHHHHHHHHHHHHTSGGGT--TCEEEEEEECTTSTTCCC-HHHHHHHHTGGGCCSSCE-EEEECBTTTT
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHhchhhC--CCeEEEEEECCCCcCCCC-HHHHHHHhChhhhcCCCc-EEEEccCCCC
Confidence            999999999999999999998887653222  799999999999976322 222222221     1233 4899999999


Q ss_pred             -CHHHHHHHHHHHHhCCC
Q 006490          576 -DLNNVFSRIIWAAEHPH  592 (643)
Q Consensus       576 -~i~~l~~~l~~~~~~~~  592 (643)
                       |+++++++|.+.+..+.
T Consensus       163 ~gi~~l~~~l~~~~~~~~  180 (187)
T 1zj6_A          163 EGLCQGLEWMMSRLKIRL  180 (187)
T ss_dssp             BTHHHHHHHHHHHHCC--
T ss_pred             cCHHHHHHHHHHHHHHHh
Confidence             99999999999886444

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.88  E-value=2.9e-22  Score=189.41  Aligned_cols=164  Identities=12%  Similarity=0.112  Sum_probs=118.3

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v   89 (643)
                      ++.+||+|+|++|||||||+|+|+++.+....++ .+....  .+..+++.+.+|||||++++...+..+++.+|++|+|
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t-~~~~~~--~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v   90 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPT-IGSNVE--EIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVV   90 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECC-SCSSCE--EEEETTEEEEEEECCC----CGGGHHHHTTCCEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCcCcCC-CccceE--EEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence            5679999999999999999999998876532332 222221  2233568999999999999988999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCCCCCccchhhhhhhHHHHh-hc-ccceEEEeCcccCCChh
Q 006490           90 YACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQ-FR-EIETCVECSATTMIQVP  165 (643)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~Sa~~~~gi~  165 (643)
                      ||++++.+++.+.. |+..+...  ..++|+++|+||+|+.....   .++..+.+... +. ...++++|||++|.|++
T Consensus        91 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~~~---~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  166 (187)
T 1zj6_A           91 VDSTDRERISVTRE-ELYKMLAHEDLRKAGLLIFANKQDVKECMT---VAEISQFLKLTSIKDHQWHIQACCALTGEGLC  166 (187)
T ss_dssp             EETTCTTTHHHHHH-HHHHHHTSGGGTTCEEEEEEECTTSTTCCC---HHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred             EeCCCHHHHHHHHH-HHHHHHhchhhCCCeEEEEEECCCCcCCCC---HHHHHHHhChhhhcCCCcEEEEccCCCCcCHH
Confidence            99999999999885 76666543  35899999999999975322   12211222111 11 11268999999999999


Q ss_pred             HHHHHHHHHHhCCCC
Q 006490          166 DVFYYAQKAVLHPTA  180 (643)
Q Consensus       166 ~l~~~i~~~~~~~~~  180 (643)
                      ++++++.+.+.....
T Consensus       167 ~l~~~l~~~~~~~~~  181 (187)
T 1zj6_A          167 QGLEWMMSRLKIRLE  181 (187)
T ss_dssp             HHHHHHHHHHCC---
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999998765443

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.88  E-value=2.7e-22  Score=190.09  Aligned_cols=161  Identities=14%  Similarity=0.221  Sum_probs=119.5

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHhcCC-CCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEE
Q 006490            8 SSRTGVRVVVVGDRGTGKSSLIAAAATES-VPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV   86 (643)
Q Consensus         8 ~~~~~~kI~lvG~~~vGKSsL~n~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i   86 (643)
                      ...+.+||+|+|++|||||||+|+|++.. +...+.++.+...  ..+..+++.+.+|||||++.+...+..+++.+|++
T Consensus        17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   94 (190)
T 2h57_A           17 RGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSI--EKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAI   94 (190)
T ss_dssp             ----CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEE--EEEECSSCEEEEEEECCSTTTGGGGGGGGGGCSEE
T ss_pred             CCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeE--EEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEE
Confidence            35667999999999999999999999887 4444444333222  23334568999999999999999999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHhc-C---CCCcEEEEEecccCCCCCccchhhhhhhHHH--Hhhc-ccceEEEeCcc
Q 006490           87 VLTYACNQQSTLSRLSSYWLPELRRL-E---IKVPIIVAGCKLDLRGDHNATSLEEVMGPIM--QQFR-EIETCVECSAT  159 (643)
Q Consensus        87 l~v~d~~~~~s~~~~~~~~~~~l~~~-~---~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~Sa~  159 (643)
                      |+|||++++.+++.+.. |+..+... .   .++|+++|+||+|+.....   .++ +....  ..+. ...++++|||+
T Consensus        95 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~Sa~  169 (190)
T 2h57_A           95 IFVIDSSDRLRMVVAKE-ELDTLLNHPDIKHRRIPILFFANKMDLRDAVT---SVK-VSQLLCLENIKDKPWHICASDAI  169 (190)
T ss_dssp             EEEEETTCHHHHHHHHH-HHHHHHHSTTTTTSCCCEEEEEECTTSTTCCC---HHH-HHHHHTGGGCCSSCEEEEECBTT
T ss_pred             EEEEECCCHHHHHHHHH-HHHHHHhChhhccCCCeEEEEEeCcCcccCCC---HHH-HHHHhChhhccCCceEEEEccCC
Confidence            99999999999999885 65555443 2   4899999999999975422   222 22222  1211 11368999999


Q ss_pred             cCCChhHHHHHHHHHH
Q 006490          160 TMIQVPDVFYYAQKAV  175 (643)
Q Consensus       160 ~~~gi~~l~~~i~~~~  175 (643)
                      +|.||+++++++.+.+
T Consensus       170 ~~~gi~~l~~~l~~~i  185 (190)
T 2h57_A          170 KGEGLQEGVDWLQDQI  185 (190)
T ss_dssp             TTBTHHHHHHHHHHHC
T ss_pred             CCcCHHHHHHHHHHHH
Confidence            9999999999998765

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.88  E-value=2.9e-22  Score=190.21  Aligned_cols=162  Identities=22%  Similarity=0.258  Sum_probs=118.6

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCC--CCCCCCCCCCCee-eCCcccCCceeEEEEeCCCCCc-chhhhHHhhccCCE
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATES--VPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLE-NKGKLNEELKRADA   85 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~-~~~~~~~~~~~ad~   85 (643)
                      ...+||+|+|++|||||||+|+|++..  +...++++..++. ....+++..+.+.+|||+|... +......+++.+|+
T Consensus         4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~   83 (192)
T 2cjw_A            4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA   83 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence            346899999999999999999999643  4444444333322 3334555567789999999875 44566678899999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCC
Q 006490           86 VVLTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQ  163 (643)
Q Consensus        86 il~v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  163 (643)
                      +++|||++++.+++.+. .|...+...  ..++|+++|+||+|+...+.+ .. +....++..++  .++++|||++|.|
T Consensus        84 ~i~v~dv~~~~s~~~~~-~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v-~~-~~~~~~a~~~~--~~~~e~SA~~g~~  158 (192)
T 2cjw_A           84 YLIVYSITDRASFEKAS-ELRIQLRRARQTEDIPIILVGNKSDLVRXREV-SV-SEGRAXAVVFD--XKFIETSAAVQHN  158 (192)
T ss_dssp             EEEEEETTCHHHHHHHH-HHHHHHHHHTTTSCCCEEEEEECTTCGGGCCS-CH-HHHHHHHHHTT--CEEEECBTTTTBS
T ss_pred             EEEEEECCCHHHHHHHH-HHHHHHHHhhCCCCCeEEEEEechhhhccccc-cH-HHHHHHHHHhC--CceEEeccccCCC
Confidence            99999999999999987 487777653  347999999999998754443 32 23344555554  3699999999999


Q ss_pred             hhHHHHHHHHHHh
Q 006490          164 VPDVFYYAQKAVL  176 (643)
Q Consensus       164 i~~l~~~i~~~~~  176 (643)
                      |+++|+++.+.+.
T Consensus       159 v~~lf~~l~~~~~  171 (192)
T 2cjw_A          159 VKELFEGIVRQVR  171 (192)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998764

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.88  E-value=3.4e-22  Score=189.46  Aligned_cols=156  Identities=14%  Similarity=0.241  Sum_probs=116.8

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v   89 (643)
                      .+.+||+++|++|||||||+++|+++.+... .++.+.+..  .+..+++.+.+|||||++.+...+..+++.+|++++|
T Consensus        21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~~-~~t~~~~~~--~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v   97 (190)
T 1m2o_B           21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLATL-QPTWHPTSE--ELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFL   97 (190)
T ss_dssp             ---CEEEEEESTTSSHHHHHHHHHHSCCCCC-CCCCSCEEE--EEEETTEEEEEEECCCSGGGTTSGGGGCTTCCEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCcc-ccCCCCCeE--EEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEE
Confidence            5568999999999999999999999887543 333333332  3334458999999999999888888999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhc----------ccceEEEeC
Q 006490           90 YACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR----------EIETCVECS  157 (643)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~S  157 (643)
                      ||++++.+++.+.. |+..+...  ..++|+++|+||+|+...  . ..++ +........          ...++++||
T Consensus        98 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~--~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~S  172 (190)
T 1m2o_B           98 VDAADPERFDEARV-ELDALFNIAELKDVPFVILGNKIDAPNA--V-SEAE-LRSALGLLNTTGSQRIEGQRPVEVFMCS  172 (190)
T ss_dssp             EETTCGGGHHHHHH-HHHHHHTCGGGTTCCEEEEEECTTSTTC--C-CHHH-HHHHTTCSSCCC---CCSSCCEEEEECB
T ss_pred             EECCChHHHHHHHH-HHHHHHcchhhcCCCEEEEEECCCCcCC--C-CHHH-HHHHhCCccccccccccccceEEEEEeE
Confidence            99999999999884 66666442  358999999999999752  1 2222 222222110          113699999


Q ss_pred             cccCCChhHHHHHHHH
Q 006490          158 ATTMIQVPDVFYYAQK  173 (643)
Q Consensus       158 a~~~~gi~~l~~~i~~  173 (643)
                      |++|.||+++|+++.+
T Consensus       173 a~~g~gi~~l~~~l~~  188 (190)
T 1m2o_B          173 VVMRNGYLEAFQWLSQ  188 (190)
T ss_dssp             TTTTBSHHHHHHHHHT
T ss_pred             CCcCCCHHHHHHHHHh
Confidence            9999999999998865

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.88  E-value=4.3e-22  Score=187.96  Aligned_cols=161  Identities=12%  Similarity=0.143  Sum_probs=120.5

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v   89 (643)
                      ++.+||+++|++|||||||+|+|++.. ...+.++.+....  .+..++..+.+|||||++++...+..+++.+|++++|
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~~--~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNIK--TLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV   92 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEEE--EEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccceE--EEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence            578999999999999999999999888 3333333333222  2333578999999999998888888999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCCCCCccchhhhhhhHHHHh-h-cccceEEEeCcccCCChh
Q 006490           90 YACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQ-F-REIETCVECSATTMIQVP  165 (643)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~Sa~~~~gi~  165 (643)
                      ||++++.+++.+.. |+..+...  ..++|+++|+||+|+......   ++..+.+... . ....++++|||++|.|++
T Consensus        93 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  168 (186)
T 1ksh_A           93 VDSADRQRMQDCQR-ELQSLLVEERLAGATLLIFANKQDLPGALSC---NAIQEALELDSIRSHHWRIQGCSAVTGEDLL  168 (186)
T ss_dssp             EETTCGGGHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTCCCH---HHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EECcCHHHHHHHHH-HHHHHHhChhcCCCcEEEEEeCccCCCCCCH---HHHHHHhChhhccCCceEEEEeeCCCCCCHH
Confidence            99999999999875 66555432  358999999999999764322   1111111110 0 111368999999999999


Q ss_pred             HHHHHHHHHHhC
Q 006490          166 DVFYYAQKAVLH  177 (643)
Q Consensus       166 ~l~~~i~~~~~~  177 (643)
                      ++++++.+.+..
T Consensus       169 ~l~~~l~~~i~~  180 (186)
T 1ksh_A          169 PGIDWLLDDISS  180 (186)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHh
Confidence            999999988754

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.88  E-value=8.5e-22  Score=182.91  Aligned_cols=160  Identities=18%  Similarity=0.199  Sum_probs=122.5

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (643)
                      +..+||+++|++|||||||+|+|+++.+.. +.||.+  .....+...  ...+.+||++|++.+..+  +..+++.+|+
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~--~~~~~~~Dt~G~~~~~~~--~~~~~~~~d~   77 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIG--FNVETVTYK--NLKFQVWDLGGLTSIRPY--WRCYYSNTDA   77 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSS--EEEEEEEET--TEEEEEEEECCCGGGGGG--GGGGCTTCSE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCc--cceEEEEEC--CEEEEEEECCCChhhhHH--HHHHhccCCE
Confidence            456899999999999999999999987753 345554  333444444  567889999999888777  6788899999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHH----HHhCCCCcEEeeeccC-
Q 006490          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVT----QELGIEPPIPVSMKSK-  575 (643)
Q Consensus       501 illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~vSa~~g-  575 (643)
                      +++|+|++++.+|.....|+..+.......  +.|+++|+||+|+.......+..+.+.    +..++ +++++||++| 
T Consensus        78 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  154 (171)
T 1upt_A           78 VIYVVDSCDRDRIGISKSELVAMLEEEELR--KAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKW-QIFKTSATKGT  154 (171)
T ss_dssp             EEEEEETTCCTTHHHHHHHHHHHHTCGGGT--TCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCE-EEEECCTTTCT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHhchhhC--CCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCce-EEEECcCCCCc
Confidence            999999999999999988888776543222  799999999999976432222222221    12233 4899999999 


Q ss_pred             CHHHHHHHHHHHHhC
Q 006490          576 DLNNVFSRIIWAAEH  590 (643)
Q Consensus       576 ~i~~l~~~l~~~~~~  590 (643)
                      |++++|++|.+.+..
T Consensus       155 gi~~l~~~l~~~i~~  169 (171)
T 1upt_A          155 GLDEAMEWLVETLKS  169 (171)
T ss_dssp             THHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHhh
Confidence            999999999998753

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.88  E-value=5.8e-22  Score=189.08  Aligned_cols=164  Identities=18%  Similarity=0.195  Sum_probs=123.8

Q ss_pred             cCceEEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccC
Q 006490          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSE-NYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASC  498 (643)
Q Consensus       420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~-~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~a  498 (643)
                      .....||+|+|.+|||||||+|+|++..+.. .+.+|.+.  ....++  +....+.+||++|++.+..+  +..+++.+
T Consensus        14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~--~~~~~~--~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~   87 (199)
T 4bas_A           14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGY--NVETFE--KGRVAFTVFDMGGAKKFRGL--WETYYDNI   87 (199)
T ss_dssp             --CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSE--EEEEEE--ETTEEEEEEEECCSGGGGGG--GGGGCTTC
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccce--eEEEEE--eCCEEEEEEECCCCHhHHHH--HHHHHhcC
Confidence            4567899999999999999999999999888 56677663  333343  35678889999999988877  67889999


Q ss_pred             CEEEEEEeCCChhhHHHHHHHHHHHHHhcCC-----CCCCCcEEEEEeCCCCCCccccHHHHHHHH-----HHhCCCCcE
Q 006490          499 DVTIFVYDSSDEYSWKRTKELLVEVARLGED-----SGYGVPCLLIASKDDLKPYTMAVQDSARVT-----QELGIEPPI  568 (643)
Q Consensus       499 d~illv~D~s~~~s~~~~~~~~~~i~~~~~~-----~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~  568 (643)
                      |++|+|||++++.+|+.+..|+..+......     ...++|+++|+||+|+.......+..+.+.     +..++ +++
T Consensus        88 d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~~  166 (199)
T 4bas_A           88 DAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPF-VIF  166 (199)
T ss_dssp             SEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCE-EEE
T ss_pred             CEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCee-EEE
Confidence            9999999999999999999998887654210     001689999999999987533222222221     23444 489


Q ss_pred             EeeeccC-CHHHHHHHHHHHHhC
Q 006490          569 PVSMKSK-DLNNVFSRIIWAAEH  590 (643)
Q Consensus       569 ~vSa~~g-~i~~l~~~l~~~~~~  590 (643)
                      +|||++| |++++|++|.+.+..
T Consensus       167 ~~Sa~~g~gv~~l~~~l~~~~~~  189 (199)
T 4bas_A          167 ASNGLKGTGVHEGFSWLQETASR  189 (199)
T ss_dssp             ECBTTTTBTHHHHHHHHHHHHHH
T ss_pred             EeeCCCccCHHHHHHHHHHHHHH
Confidence            9999999 999999999998753

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.88  E-value=1e-21  Score=185.39  Aligned_cols=157  Identities=20%  Similarity=0.226  Sum_probs=123.2

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (643)
                      +..+||+++|++|||||||+|+|++.. ...+.||.+.  ....+...  ...+.+||++|++.+..+  +..+++.+|+
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~--~~~~~~~~--~~~~~~~Dt~G~~~~~~~--~~~~~~~~d~   88 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGF--NIKTLEHR--GFKLNIWDVGGQKSLRSY--WRNYFESTDG   88 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSE--EEEEEEET--TEEEEEEEECCSHHHHTT--GGGGCTTCSE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCcc--ceEEEEEC--CEEEEEEECCCCHhHHHH--HHHHhcCCCE
Confidence            456899999999999999999999988 5555566653  33444443  467889999999888877  6788999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHh--------CCCCcEEeee
Q 006490          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQEL--------GIEPPIPVSM  572 (643)
Q Consensus       501 illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~--------~~~~~~~vSa  572 (643)
                      +++|+|++++.+++.+..|+..+.......  +.|+++|+||+|+......    +++.+.+        ++ +++++||
T Consensus        89 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~Sa  161 (186)
T 1ksh_A           89 LIWVVDSADRQRMQDCQRELQSLLVEERLA--GATLLIFANKQDLPGALSC----NAIQEALELDSIRSHHW-RIQGCSA  161 (186)
T ss_dssp             EEEEEETTCGGGHHHHHHHHHHHHTCGGGT--TCEEEEEEECTTSTTCCCH----HHHHHHTTGGGCCSSCE-EEEECCT
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHhChhcC--CCcEEEEEeCccCCCCCCH----HHHHHHhChhhccCCce-EEEEeeC
Confidence            999999999999999999988877643222  7999999999999764322    2222222        23 4899999


Q ss_pred             ccC-CHHHHHHHHHHHHhCC
Q 006490          573 KSK-DLNNVFSRIIWAAEHP  591 (643)
Q Consensus       573 ~~g-~i~~l~~~l~~~~~~~  591 (643)
                      ++| |+++++++|.+.+...
T Consensus       162 ~~~~gi~~l~~~l~~~i~~~  181 (186)
T 1ksh_A          162 VTGEDLLPGIDWLLDDISSR  181 (186)
T ss_dssp             TTCTTHHHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhc
Confidence            999 9999999999988643

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.88  E-value=3.2e-22  Score=188.12  Aligned_cols=160  Identities=18%  Similarity=0.223  Sum_probs=117.4

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v   89 (643)
                      ...+||+++|++|||||||+++|++..+.. +.++.+.+..  .+..+++.+.+|||||++.+...+..+++.+|++++|
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~-~~~t~g~~~~--~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v   90 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASEDISH-ITPTQGFNIK--SVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYV   90 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCCEE-EEEETTEEEE--EEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCCCc-ccCcCCeEEE--EEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEE
Confidence            567999999999999999999999886532 2222232222  2233478999999999999888889999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhh--cccceEEEeCcccCCChh
Q 006490           90 YACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF--REIETCVECSATTMIQVP  165 (643)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~gi~  165 (643)
                      ||++++.+++.+.. |+..+...  ..++|+++|+||+|+......   ++..+.+....  ....++++|||++|.||+
T Consensus        91 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  166 (181)
T 1fzq_A           91 IDSADRKRFEETGQ-ELTELLEEEKLSCVPVLIFANKQDLLTAAPA---SEIAEGLNLHTIRDRVWQIQSCSALTGEGVQ  166 (181)
T ss_dssp             EETTCGGGHHHHHH-HHHHHTTCGGGTTCCEEEEEECTTSTTCCCH---HHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EECcCHHHHHHHHH-HHHHHHhChhhcCCCEEEEEECcCcccCCCH---HHHHHHhCchhccCCceEEEEccCCCCCCHH
Confidence            99999999998874 66555322  258999999999999764322   11111111110  011268999999999999


Q ss_pred             HHHHHHHHHHh
Q 006490          166 DVFYYAQKAVL  176 (643)
Q Consensus       166 ~l~~~i~~~~~  176 (643)
                      ++|+++.+.+.
T Consensus       167 ~l~~~l~~~~~  177 (181)
T 1fzq_A          167 DGMNWVCKNVN  177 (181)
T ss_dssp             HHHHHHHHTC-
T ss_pred             HHHHHHHHHHH
Confidence            99999987653

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.88  E-value=3.6e-22  Score=189.63  Aligned_cols=161  Identities=11%  Similarity=0.115  Sum_probs=115.6

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEE
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (643)
                      .++.+||+|+|++|||||||+++|+++.+....|+ .+.  ....+...++.+.+|||||++.+...+..+++.+|++|+
T Consensus        26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t-~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iil  102 (192)
T 2b6h_A           26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPT-IGF--NVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIF  102 (192)
T ss_dssp             TTSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEE-TTE--EEEEEEETTEEEEEEECC-----CTTHHHHHHTCCEEEE
T ss_pred             cCCccEEEEECCCCCCHHHHHHHHHhCCccccCCc-Cce--eEEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence            35679999999999999999999998887543332 221  112344567899999999999988889999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhh--cccceEEEeCcccCCCh
Q 006490           89 TYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF--REIETCVECSATTMIQV  164 (643)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~gi  164 (643)
                      |||++++.+++.+.. |+..+...  ..++|+++|+||+|+......   .+....+....  ....++++|||++|.||
T Consensus       103 v~D~~~~~s~~~~~~-~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi  178 (192)
T 2b6h_A          103 VVDSNDRERVQESAD-ELQKMLQEDELRDAVLLVFANKQDMPNAMPV---SELTDKLGLQHLRSRTWYVQATCATQGTGL  178 (192)
T ss_dssp             EEETTCGGGHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTCCCH---HHHHHHTTGGGCSSCCEEEEECBTTTTBTH
T ss_pred             EEECCCHHHHHHHHH-HHHHHhcccccCCCeEEEEEECCCCCCCCCH---HHHHHHhCcccccCCceEEEECcCCCcCCH
Confidence            999999999999874 66665432  258999999999999754221   11111111111  01125899999999999


Q ss_pred             hHHHHHHHHHHh
Q 006490          165 PDVFYYAQKAVL  176 (643)
Q Consensus       165 ~~l~~~i~~~~~  176 (643)
                      +++|+++.+.+.
T Consensus       179 ~~l~~~l~~~i~  190 (192)
T 2b6h_A          179 YDGLDWLSHELS  190 (192)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHh
Confidence            999999988753

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.88  E-value=1.9e-22  Score=192.03  Aligned_cols=161  Identities=18%  Similarity=0.168  Sum_probs=122.8

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC-----------CcccceEEEEE-EcCCCcEEEEEEecCCchhhhhh
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAP-----------TTGEQYAVNVV-DQPGGNKKTLILQEIPEEGVKKI  488 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~-----------t~~~~~~~~~v-~~~g~~~~~~i~d~~g~~~~~~~  488 (643)
                      ...+||+|+|++|||||||++.+.+.. ...+.+           |.+.++....+ ...+....+.+||++|++.+..+
T Consensus        12 ~~~~ki~vvG~~~~GKssL~~~l~~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~   90 (198)
T 3t1o_A           12 EINFKIVYYGPGLSGKTTNLKWIYSKV-PEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNAS   90 (198)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHTS-CGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHH
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHhhc-cccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHH
Confidence            456999999999999999997776643 333322           22222222222 34445667889999999888877


Q ss_pred             hccHHhhccCCEEEEEEeCC------ChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHh
Q 006490          489 LSNKEALASCDVTIFVYDSS------DEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQEL  562 (643)
Q Consensus       489 ~~~~~~~~~ad~illv~D~s------~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~  562 (643)
                        +..+++.+|++|+|||++      +..+|+.+..|+..+.....    +.|+++|+||+|+... ...+++.++++..
T Consensus        91 --~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~----~~piilv~NK~Dl~~~-~~~~~~~~~~~~~  163 (198)
T 3t1o_A           91 --RKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLD----DVPIVIQVNKRDLPDA-LPVEMVRAVVDPE  163 (198)
T ss_dssp             --HHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTT----SSCEEEEEECTTSTTC-CCHHHHHHHHCTT
T ss_pred             --HHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccC----CCCEEEEEEchhcccc-cCHHHHHHHHHhc
Confidence              778899999999999999      45667777777776632222    8999999999999764 4467788888888


Q ss_pred             CCCCcEEeeeccC-CHHHHHHHHHHHHh
Q 006490          563 GIEPPIPVSMKSK-DLNNVFSRIIWAAE  589 (643)
Q Consensus       563 ~~~~~~~vSa~~g-~i~~l~~~l~~~~~  589 (643)
                      ++.+++++||++| |++++|++|.+.+.
T Consensus       164 ~~~~~~~~Sa~~~~gv~~l~~~l~~~i~  191 (198)
T 3t1o_A          164 GKFPVLEAVATEGKGVFETLKEVSRLVL  191 (198)
T ss_dssp             CCSCEEECBGGGTBTHHHHHHHHHHHHH
T ss_pred             CCceEEEEecCCCcCHHHHHHHHHHHHH
Confidence            9845999999999 99999999999775

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.87  E-value=1.1e-22  Score=197.22  Aligned_cols=162  Identities=15%  Similarity=0.216  Sum_probs=126.5

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCC----------ceeEEEEeCCCCCcchhhhH
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPD----------RVPVTIIDTSSSLENKGKLN   77 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~----------~~~~~i~Dt~G~~~~~~~~~   77 (643)
                      ...+||+|+|++|||||||+|+|++..+...+.++.+...  ....+...          .+.+.||||||++.+...+.
T Consensus        23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~  102 (217)
T 2f7s_A           23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT  102 (217)
T ss_dssp             SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHH
Confidence            4468999999999999999999999887544322222111  12233333          67899999999988888888


Q ss_pred             HhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcC--CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEE
Q 006490           78 EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVE  155 (643)
Q Consensus        78 ~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (643)
                      .+++.+|++|+|||++++.+++.+. .|+..+....  .++|+++|+||+|+...+.+  ..+..+.+++.++  .++++
T Consensus       103 ~~~~~~d~iilV~D~~~~~s~~~~~-~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~--~~~~~  177 (217)
T 2f7s_A          103 AFFRDAMGFLLMFDLTSQQSFLNVR-NWMSQLQANAYCENPDIVLIGNKADLPDQREV--NERQARELADKYG--IPYFE  177 (217)
T ss_dssp             HHHTTCCEEEEEEETTCHHHHHHHH-HHHHTCCCCCTTTCCEEEEEEECTTCGGGCCS--CHHHHHHHHHHTT--CCEEE
T ss_pred             HHhcCCCEEEEEEECcCHHHHHHHH-HHHHHHHHhcCcCCCCEEEEEECCcccccccc--CHHHHHHHHHHCC--CcEEE
Confidence            9999999999999999999999887 5887776543  58999999999999765443  2344566777665  36999


Q ss_pred             eCcccCCChhHHHHHHHHHHh
Q 006490          156 CSATTMIQVPDVFYYAQKAVL  176 (643)
Q Consensus       156 ~Sa~~~~gi~~l~~~i~~~~~  176 (643)
                      |||++|.||+++|+++.+.+.
T Consensus       178 ~Sa~~g~gi~~l~~~l~~~i~  198 (217)
T 2f7s_A          178 TSAATGQNVEKAVETLLDLIM  198 (217)
T ss_dssp             EBTTTTBTHHHHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHHHH
Confidence            999999999999999988764

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.87  E-value=7.9e-22  Score=188.25  Aligned_cols=156  Identities=17%  Similarity=0.174  Sum_probs=115.0

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i  501 (643)
                      ..+||+++|++|||||||+++|.++.+.. +.||.+...  ..+...+  ..+.+||++|++.+..+  +..+++.+|++
T Consensus        24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~l~i~Dt~G~~~~~~~--~~~~~~~~d~~   96 (198)
T 1f6b_A           24 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPTS--EELTIAG--MTFTTFDLGGHIQARRV--WKNYLPAINGI   96 (198)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSC--EEEEETT--EEEEEEEECC----CCG--GGGGGGGCSEE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCCCc-cCCCCCcee--EEEEECC--EEEEEEECCCcHhhHHH--HHHHHhcCCEE
Confidence            45799999999999999999999988653 446655543  3444553  67889999999888777  67889999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhC----------------CC
Q 006490          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELG----------------IE  565 (643)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~----------------~~  565 (643)
                      ++|+|++++.+|+....|+..+.+.....  ++|+++|+||+|+.. ....+++.++.....                ..
T Consensus        97 i~v~D~~~~~s~~~~~~~~~~~~~~~~~~--~~piilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (198)
T 1f6b_A           97 VFLVDCADHERLLESKEELDSLMTDETIA--NVPILILGNKIDRPE-AISEERLREMFGLYGQTTGKGSVSLKELNARPL  173 (198)
T ss_dssp             EEEEETTCGGGHHHHHHHHHHHHTCGGGT--TSCEEEEEECTTSTT-CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCE
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHhCcccC--CCcEEEEEECCCccc-cCCHHHHHHHhCcccccccccccccccccCceE
Confidence            99999999999999999998887643222  799999999999976 223444444443221                12


Q ss_pred             CcEEeeeccC-CHHHHHHHHHHH
Q 006490          566 PPIPVSMKSK-DLNNVFSRIIWA  587 (643)
Q Consensus       566 ~~~~vSa~~g-~i~~l~~~l~~~  587 (643)
                      ++++|||++| |++++|++|.+.
T Consensus       174 ~~~~~SA~~g~gv~~l~~~l~~~  196 (198)
T 1f6b_A          174 EVFMCSVLKRQGYGEGFRWMAQY  196 (198)
T ss_dssp             EEEECBTTTTBSHHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh
Confidence            4899999999 999999998764

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.87  E-value=9.3e-22  Score=181.38  Aligned_cols=153  Identities=22%  Similarity=0.227  Sum_probs=119.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill  503 (643)
                      +||+++|++|||||||+|+|+++.+.. +.||.+.  ....+..  ....+.+||++|++.+..+  +..+++++|++++
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~--~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d~~i~   73 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGF--NVETVEY--KNISFTVWDVGGQDKIRPL--WRHYFQNTQGLIF   73 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSC--CEEEEEC--SSCEEEEEECCCCGGGHHH--HHHHTTTCSEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCce--eEEEEEE--CCEEEEEEEcCCChhhHHH--HHHHhccCCEEEE
Confidence            589999999999999999999988754 4466553  3344444  3467889999999888776  6778999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCC-------CCcEEeeeccC-
Q 006490          504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGI-------EPPIPVSMKSK-  575 (643)
Q Consensus       504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~-------~~~~~vSa~~g-  575 (643)
                      |+|++++.+|+....|+..+.......  +.|+++|+||+|+.....    .+++.+..+.       .++++|||++| 
T Consensus        74 v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  147 (164)
T 1r8s_A           74 VVDSNDRERVNEAREELMRMLAEDELR--DAVLLVFANKQDLPNAMN----AAEITDKLGLHSLRHRNWYIQATCATSGD  147 (164)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGT--TCEEEEEEECTTSTTCCC----HHHHHHHTTGGGCSSCCEEEEECBTTTTB
T ss_pred             EEECCCHHHHHHHHHHHHHHHhchhhc--CCeEEEEEECcCCcCCCC----HHHHHHHhCcccccCccEEEEEcccCCCc
Confidence            999999999999999988876543222  789999999999976422    2233333322       13899999999 


Q ss_pred             CHHHHHHHHHHHHh
Q 006490          576 DLNNVFSRIIWAAE  589 (643)
Q Consensus       576 ~i~~l~~~l~~~~~  589 (643)
                      |++++|++|.+.+.
T Consensus       148 gi~~l~~~l~~~i~  161 (164)
T 1r8s_A          148 GLYEGLDWLSNQLR  161 (164)
T ss_dssp             THHHHHHHHHHHC-
T ss_pred             CHHHHHHHHHHHHh
Confidence            99999999998764

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.87  E-value=1.8e-21  Score=184.38  Aligned_cols=162  Identities=17%  Similarity=0.182  Sum_probs=123.5

Q ss_pred             cCceEEEEEEcCCCCCHHHHHHHHhcCC-CCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccC
Q 006490          420 ERNVFRCLLFGPQNAGKSALLNSFLERP-FSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASC  498 (643)
Q Consensus       420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~-~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~a  498 (643)
                      ....+||+|+|.+|||||||+|+|++.. +...+.+|.+  +....+...+  ..+.+||++|++.+..+  +..+++.+
T Consensus        18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~--~~~~~~~~   91 (190)
T 2h57_A           18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSGQGRYRNL--WEHYYKEG   91 (190)
T ss_dssp             ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSS--CEEEEEEECCSTTTGGG--GGGGGGGC
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECC--EEEEEEECCCCHHHHHH--HHHHHhcC
Confidence            3456999999999999999999999987 4444545554  4455566653  67888999999888877  67889999


Q ss_pred             CEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHH--H---hCCCCcEEeeec
Q 006490          499 DVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQ--E---LGIEPPIPVSMK  573 (643)
Q Consensus       499 d~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~--~---~~~~~~~~vSa~  573 (643)
                      |++++|+|++++.+++.+..|+..+.........++|+++|+||+|+..... .+...+...  .   .++ ++++|||+
T Consensus        92 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~Sa~  169 (190)
T 2h57_A           92 QAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVT-SVKVSQLLCLENIKDKPW-HICASDAI  169 (190)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCC-HHHHHHHHTGGGCCSSCE-EEEECBTT
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCC-HHHHHHHhChhhccCCce-EEEEccCC
Confidence            9999999999999999999998888765432001799999999999976322 233333332  1   133 48999999


Q ss_pred             cC-CHHHHHHHHHHHHh
Q 006490          574 SK-DLNNVFSRIIWAAE  589 (643)
Q Consensus       574 ~g-~i~~l~~~l~~~~~  589 (643)
                      +| |++++|++|.+.+.
T Consensus       170 ~~~gi~~l~~~l~~~i~  186 (190)
T 2h57_A          170 KGEGLQEGVDWLQDQIQ  186 (190)
T ss_dssp             TTBTHHHHHHHHHHHC-
T ss_pred             CCcCHHHHHHHHHHHHH
Confidence            99 99999999998775

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.87  E-value=6.3e-22  Score=186.02  Aligned_cols=157  Identities=18%  Similarity=0.203  Sum_probs=117.9

Q ss_pred             ccCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccC
Q 006490          419 TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASC  498 (643)
Q Consensus       419 ~~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~a  498 (643)
                      .....+||+|+|.+|||||||+|+|++..+ ..+.+|.+...  ..+...  ...+.+||++|++.+..+  +..+++.+
T Consensus        17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~~--~~~~~i~Dt~G~~~~~~~--~~~~~~~~   89 (181)
T 2h17_A           17 RGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVIN--NTRFLMWDIGGQESLRSS--WNTYYTNT   89 (181)
T ss_dssp             ----CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEET--TEEEEEEEESSSGGGTCG--GGGGGTTC
T ss_pred             CCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEEC--CEEEEEEECCCCHhHHHH--HHHHhccC
Confidence            345579999999999999999999999987 33445655433  333344  377889999999888777  67889999


Q ss_pred             CEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHH-----HhCCCCcEEeeec
Q 006490          499 DVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQ-----ELGIEPPIPVSMK  573 (643)
Q Consensus       499 d~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~vSa~  573 (643)
                      |++++|+|++++.+++.+..|+..+.......  ++|+++|+||+|+..... .+.+.+...     ..++ ++++|||+
T Consensus        90 d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~--~~piilv~NK~Dl~~~~~-~~~i~~~~~~~~~~~~~~-~~~~~Sa~  165 (181)
T 2h17_A           90 EFVIVVVDSTDRERISVTREELYKMLAHEDLR--KAGLLIFANKQDVKECMT-VAEISQFLKLTSIKDHQW-HIQACCAL  165 (181)
T ss_dssp             CEEEEEEETTCTTTHHHHHHHHHHHHTCGGGT--TCEEEEEEECTTSTTCCC-HHHHHHHTTGGGCCSSCE-EEEECBTT
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHhChhhC--CCeEEEEEECCCcccCCC-HHHHHHHhCcccccCCce-EEEEccCC
Confidence            99999999999999999999988877643222  799999999999976322 222222211     1222 48999999


Q ss_pred             cC-CHHHHHHHHHH
Q 006490          574 SK-DLNNVFSRIIW  586 (643)
Q Consensus       574 ~g-~i~~l~~~l~~  586 (643)
                      +| |++++|++|.+
T Consensus       166 ~g~gi~~l~~~l~~  179 (181)
T 2h17_A          166 TGEGLCQGLEWMMS  179 (181)
T ss_dssp             TTBTHHHHHHHHHT
T ss_pred             CCcCHHHHHHHHHh
Confidence            99 99999999875

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.87  E-value=1.2e-21  Score=185.58  Aligned_cols=156  Identities=15%  Similarity=0.162  Sum_probs=119.2

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i  501 (643)
                      ..+||+++|++|||||||+++|.++.+.. +.||.+..  ...+...+  ..+.+||++|++.+..+  +..+++.+|++
T Consensus        22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~--~~~~~~~~d~~   94 (190)
T 1m2o_B           22 KHGKLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPT--SEELAIGN--IKFTTFDLGGHIQARRL--WKDYFPEVNGI   94 (190)
T ss_dssp             --CEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCCSCE--EEEEEETT--EEEEEEECCCSGGGTTS--GGGGCTTCCEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCCc-cccCCCCC--eEEEEECC--EEEEEEECCCCHHHHHH--HHHHHhcCCEE
Confidence            45799999999999999999999988753 44555543  34455553  77889999999888776  67788999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHh-----------CCCCcEEe
Q 006490          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQEL-----------GIEPPIPV  570 (643)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~-----------~~~~~~~v  570 (643)
                      ++|+|++++.+|+....|+..+.+.....  +.|+++|+||+|+.. ....++..+.....           ...++++|
T Consensus        95 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~piilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (190)
T 1m2o_B           95 VFLVDAADPERFDEARVELDALFNIAELK--DVPFVILGNKIDAPN-AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMC  171 (190)
T ss_dssp             EEEEETTCGGGHHHHHHHHHHHHTCGGGT--TCCEEEEEECTTSTT-CCCHHHHHHHTTCSSCCC---CCSSCCEEEEEC
T ss_pred             EEEEECCChHHHHHHHHHHHHHHcchhhc--CCCEEEEEECCCCcC-CCCHHHHHHHhCCccccccccccccceEEEEEe
Confidence            99999999999999999998887643222  799999999999976 22233333332221           11148999


Q ss_pred             eeccC-CHHHHHHHHHHH
Q 006490          571 SMKSK-DLNNVFSRIIWA  587 (643)
Q Consensus       571 Sa~~g-~i~~l~~~l~~~  587 (643)
                      ||++| |++++|++|.+.
T Consensus       172 Sa~~g~gi~~l~~~l~~~  189 (190)
T 1m2o_B          172 SVVMRNGYLEAFQWLSQY  189 (190)
T ss_dssp             BTTTTBSHHHHHHHHHTT
T ss_pred             ECCcCCCHHHHHHHHHhh
Confidence            99999 999999998753

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.87  E-value=1.4e-21  Score=188.92  Aligned_cols=162  Identities=17%  Similarity=0.168  Sum_probs=114.9

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCC-ceeEEEEeCCCCCcchh-hhHHhhccCCEE
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPD-RVPVTIIDTSSSLENKG-KLNEELKRADAV   86 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~Dt~G~~~~~~-~~~~~~~~ad~i   86 (643)
                      ..+.+||+|+|++|||||||+++|++..+...++++..... ...+... ++.+.+|||||++.+.. .+..+++.+|++
T Consensus         4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~   82 (214)
T 2fh5_B            4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSA-IYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAV   82 (214)
T ss_dssp             ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEE-EEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEE
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeE-EEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEE
Confidence            35678999999999999999999999988777665433222 2333333 68899999999998877 778889999999


Q ss_pred             EEEEECCCcc-cHHHHHHHHHHHHHh---cCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhc--------------
Q 006490           87 VLTYACNQQS-TLSRLSSYWLPELRR---LEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR--------------  148 (643)
Q Consensus        87 l~v~d~~~~~-s~~~~~~~~~~~l~~---~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~--------------  148 (643)
                      |+|||+++.. ++......|.+.+..   ...++|+++|+||+|+......   ......+...++              
T Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~~~~~~l~~~l~~~~~~~~~~~s~~~  159 (214)
T 2fh5_B           83 VFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSA---KLIQQQLEKELNTLRVTRSAAPSTLD  159 (214)
T ss_dssp             EEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCH---HHHHHHHHHHHHHHHHHCC-------
T ss_pred             EEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccH---HHHHHHHHHHHHHHhccchhcccccc
Confidence            9999998853 456665556666644   2347999999999999765432   111111111111              


Q ss_pred             ----------------------ccceEEEeCcccC------CChhHHHHHHHHH
Q 006490          149 ----------------------EIETCVECSATTM------IQVPDVFYYAQKA  174 (643)
Q Consensus       149 ----------------------~~~~~~~~Sa~~~------~gi~~l~~~i~~~  174 (643)
                                            ...++++|||++|      .||+++|+++.+.
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~  213 (214)
T 2fh5_B          160 SSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI  213 (214)
T ss_dssp             -----CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred             CCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence                                  0236999999999      9999999998765

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.87  E-value=7.1e-22  Score=188.25  Aligned_cols=164  Identities=13%  Similarity=0.148  Sum_probs=113.3

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-eCCcc-cCCceeEEEEeCCCCCcchhhh---HHhhcc
Q 006490            8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDF-YPDRVPVTIIDTSSSLENKGKL---NEELKR   82 (643)
Q Consensus         8 ~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~i~Dt~G~~~~~~~~---~~~~~~   82 (643)
                      ...+.+||+|+|++|||||||++++.+........+...... ....+ ....+.+.+|||||++.+....   ..+++.
T Consensus        16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~   95 (196)
T 3llu_A           16 FQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRG   95 (196)
T ss_dssp             ----CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHT
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccccccc
Confidence            456679999999999999999998887532221111111111 11112 2566889999999999887776   899999


Q ss_pred             CCEEEEEEECCCc--ccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCcc-----chhhhhhhHHHH----hhcccc
Q 006490           83 ADAVVLTYACNQQ--STLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA-----TSLEEVMGPIMQ----QFREIE  151 (643)
Q Consensus        83 ad~il~v~d~~~~--~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~-----~~~~~~~~~~~~----~~~~~~  151 (643)
                      +|++|+|||++++  .+++.+. .|+..+....+++|++||+||+|+......     ....+....+++    .++  .
T Consensus        96 ~~~~i~v~d~~~~~~~~~~~~~-~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~  172 (196)
T 3llu_A           96 TGALIYVIDAQDDYMEALTRLH-ITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLH--L  172 (196)
T ss_dssp             CSEEEEEEETTSCCHHHHHHHH-HHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSC--E
T ss_pred             CCEEEEEEECCCchHHHHHHHH-HHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCC--c
Confidence            9999999999997  5555555 366666555679999999999998653110     011222344444    222  3


Q ss_pred             eEEEeCcccCCChhHHHHHHHHHH
Q 006490          152 TCVECSATTMIQVPDVFYYAQKAV  175 (643)
Q Consensus       152 ~~~~~Sa~~~~gi~~l~~~i~~~~  175 (643)
                      ++++|||++ .||+++|+.+++.+
T Consensus       173 ~~~e~Sa~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          173 SFYLTSIYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             EEEEECTTS-THHHHHHHHHHHHT
T ss_pred             ceEEEEech-hhHHHHHHHHHHHh
Confidence            699999999 99999999998764

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.87  E-value=1.4e-21  Score=183.78  Aligned_cols=156  Identities=23%  Similarity=0.316  Sum_probs=119.7

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (643)
                      ...+||+++|++|||||||+++|.+..+.. +.||.+  +....+...  ...+.+||++|++.+..+  +..+++.+|+
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~-~~~t~g--~~~~~~~~~--~~~l~i~Dt~G~~~~~~~--~~~~~~~~~~   86 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASEDISH-ITPTQG--FNIKSVQSQ--GFKLNVWDIGGQRKIRPY--WRSYFENTDI   86 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCCEE-EEEETT--EEEEEEEET--TEEEEEEECSSCGGGHHH--HHHHHTTCSE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCCCc-ccCcCC--eEEEEEEEC--CEEEEEEECCCCHHHHHH--HHHHhCCCCE
Confidence            456899999999999999999999986532 335544  334445544  467888999999888776  6788999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCC-------CCcEEeeec
Q 006490          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGI-------EPPIPVSMK  573 (643)
Q Consensus       501 illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~-------~~~~~vSa~  573 (643)
                      +++|+|++++.+|+....|+..+.......  +.|+++|+||+|+......    +++.+.++.       .++++|||+
T Consensus        87 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~piilv~NK~Dl~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~  160 (181)
T 1fzq_A           87 LIYVIDSADRKRFEETGQELTELLEEEKLS--CVPVLIFANKQDLLTAAPA----SEIAEGLNLHTIRDRVWQIQSCSAL  160 (181)
T ss_dssp             EEEEEETTCGGGHHHHHHHHHHHTTCGGGT--TCCEEEEEECTTSTTCCCH----HHHHHHTTGGGCCSSCEEEEECCTT
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHhChhhc--CCCEEEEEECcCcccCCCH----HHHHHHhCchhccCCceEEEEccCC
Confidence            999999999999999988888775432222  7999999999999764322    233333321       148999999


Q ss_pred             cC-CHHHHHHHHHHHHh
Q 006490          574 SK-DLNNVFSRIIWAAE  589 (643)
Q Consensus       574 ~g-~i~~l~~~l~~~~~  589 (643)
                      +| |++++|++|.+.+.
T Consensus       161 ~g~gi~~l~~~l~~~~~  177 (181)
T 1fzq_A          161 TGEGVQDGMNWVCKNVN  177 (181)
T ss_dssp             TCTTHHHHHHHHHHTC-
T ss_pred             CCCCHHHHHHHHHHHHH
Confidence            99 99999999988664

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.78  E-value=1e-23  Score=202.46  Aligned_cols=165  Identities=24%  Similarity=0.334  Sum_probs=128.9

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe-eeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEE
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (643)
                      .+.+||+|+|++|||||||+++|++..+.....++.... .....+....+.+.+|||||++.+...+..+++.+|++|+
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil  107 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLI  107 (204)
Confidence            567999999999999999999999888766544433222 2333445566778899999999988888899999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCcc----------chhhhhhhHHHHhhcccceEEEeCc
Q 006490           89 TYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA----------TSLEEVMGPIMQQFREIETCVECSA  158 (643)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~Sa  158 (643)
                      |||++++.+++.+...|...+....+++|+++|+||+|+......          ....+....+++.++. .++++|||
T Consensus       108 v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~vSA  186 (204)
T 3th5_A          108 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA-VKYLECSA  186 (204)
Confidence            999999999999875698888877668999999999999764310          0122334455555542 26899999


Q ss_pred             ccCCChhHHHHHHHHHH
Q 006490          159 TTMIQVPDVFYYAQKAV  175 (643)
Q Consensus       159 ~~~~gi~~l~~~i~~~~  175 (643)
                      ++|.||+++|+++.+.+
T Consensus       187 ~~g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          187 LTQRGLKTVFDEAIRAV  203 (204)
Confidence            99999999999887654

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.86  E-value=2e-21  Score=184.47  Aligned_cols=157  Identities=18%  Similarity=0.237  Sum_probs=117.9

Q ss_pred             cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCC
Q 006490          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (643)
Q Consensus       420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad  499 (643)
                      .+..+||+|+|++|||||||+|+|+++.+.. +.||.+  +....++.  ....+.+||++|++.+..+  +..+++.+|
T Consensus        26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~--~~~~~~~~--~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d   98 (192)
T 2b6h_A           26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEY--KNICFTVWDVGGQDKIRPL--WRHYFQNTQ   98 (192)
T ss_dssp             TTSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETT--EEEEEEEE--TTEEEEEEECC-----CTT--HHHHHHTCC
T ss_pred             cCCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCc--eeEEEEEE--CCEEEEEEECCCCHhHHHH--HHHHhccCC
Confidence            3456999999999999999999999887653 335544  33444444  3477889999999888776  677899999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCC-------CcEEeee
Q 006490          500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE-------PPIPVSM  572 (643)
Q Consensus       500 ~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-------~~~~vSa  572 (643)
                      ++++|+|++++.+++....|+..+.......  +.|+++|+||+|+.....    .+++.+.++..       ++++|||
T Consensus        99 ~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~--~~piilv~NK~Dl~~~~~----~~~i~~~~~~~~~~~~~~~~~~~SA  172 (192)
T 2b6h_A           99 GLIFVVDSNDRERVQESADELQKMLQEDELR--DAVLLVFANKQDMPNAMP----VSELTDKLGLQHLRSRTWYVQATCA  172 (192)
T ss_dssp             EEEEEEETTCGGGHHHHHHHHHHHHTCGGGT--TCEEEEEEECTTSTTCCC----HHHHHHHTTGGGCSSCCEEEEECBT
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHhcccccC--CCeEEEEEECCCCCCCCC----HHHHHHHhCcccccCCceEEEECcC
Confidence            9999999999999999999988876643222  799999999999976422    23334443321       3899999


Q ss_pred             ccC-CHHHHHHHHHHHHh
Q 006490          573 KSK-DLNNVFSRIIWAAE  589 (643)
Q Consensus       573 ~~g-~i~~l~~~l~~~~~  589 (643)
                      ++| |++++|++|.+.+.
T Consensus       173 ~~g~gi~~l~~~l~~~i~  190 (192)
T 2b6h_A          173 TQGTGLYDGLDWLSHELS  190 (192)
T ss_dssp             TTTBTHHHHHHHHHHHTT
T ss_pred             CCcCCHHHHHHHHHHHHh
Confidence            999 99999999998764

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.86  E-value=1.1e-21  Score=185.80  Aligned_cols=160  Identities=15%  Similarity=0.109  Sum_probs=119.4

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v   89 (643)
                      ++.+||+++|++|||||||+|+|+++.+....|+ .+....  .+..+++.+.+|||||++.+...+..+++.+|++|+|
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t-~~~~~~--~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v   96 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPT-VGVNLE--TLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYV   96 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSCCEEECSS-TTCCEE--EEEETTEEEEEEEECCSSSSCCCCSSSSTTCCEEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCCcCCC-CceEEE--EEEECCEEEEEEECCCCHhHHHHHHHHhhcCCEEEEE
Confidence            5789999999999999999999998877544333 222221  2333578999999999998888888999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhh-c-ccceEEEeCcccCCChh
Q 006490           90 YACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF-R-EIETCVECSATTMIQVP  165 (643)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~Sa~~~~gi~  165 (643)
                      ||++++.+++.... |+..+...  ..++|+++|+||+|+......   .+....+.... . ...++++|||++|.|++
T Consensus        97 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  172 (189)
T 2x77_A           97 VDSTDRDRMGVAKH-ELYALLDEDELRKSLLLIFANKQDLPDAASE---AEIAEQLGVSSIMNRTWTIVKSSSKTGDGLV  172 (189)
T ss_dssp             EETTCCTTHHHHHH-HHHHHHTCSTTTTCEEEEEEECTTSTTCCCH---HHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EeCCCHHHHHHHHH-HHHHHHhhhhcCCCeEEEEEECCCCcCCCCH---HHHHHHhChhhccCCceEEEEccCCCccCHH
Confidence            99999999998875 55555332  258999999999999764321   11111111110 0 01268999999999999


Q ss_pred             HHHHHHHHHHh
Q 006490          166 DVFYYAQKAVL  176 (643)
Q Consensus       166 ~l~~~i~~~~~  176 (643)
                      ++++++.+.+.
T Consensus       173 ~l~~~l~~~i~  183 (189)
T 2x77_A          173 EGMDWLVERLR  183 (189)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988764

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.86  E-value=1.2e-21  Score=181.18  Aligned_cols=153  Identities=16%  Similarity=0.169  Sum_probs=109.2

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcch------hhhHHhhc--
Q 006490           11 TGVRVVVVGDRGTGKSSLIAAAATESVP-EKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENK------GKLNEELK--   81 (643)
Q Consensus        11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~------~~~~~~~~--   81 (643)
                      +.++|+|+|++|||||||+|+|++..+. ...+++... .....+..++..+.+|||||++.+.      .....+++  
T Consensus         2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~   80 (165)
T 2wji_A            2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVE-KKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINE   80 (165)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCC-CCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCccee-eeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence            4589999999999999999999987643 234432111 1112233346789999999998764      23345554  


Q ss_pred             cCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccC
Q 006490           82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM  161 (643)
Q Consensus        82 ~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  161 (643)
                      ++|++++|+|+++...   .. .|+..+.+.  ++|+++|+||+|+...... .  ...+.+++.++  .+++++||++|
T Consensus        81 ~~~~~i~v~D~~~~~~---~~-~~~~~~~~~--~~p~ilv~nK~Dl~~~~~~-~--~~~~~~~~~~~--~~~~~~SA~~~  149 (165)
T 2wji_A           81 KPDLVVNIVDATALER---NL-YLTLQLMEM--GANLLLALNKMDLAKSLGI-E--IDVDKLEKILG--VKVVPLSAAKK  149 (165)
T ss_dssp             CCSEEEEEEETTCHHH---HH-HHHHHHHHT--TCCEEEEEECHHHHHHTTC-C--CCHHHHHHHHT--SCEEECBGGGT
T ss_pred             CCCEEEEEecCCchhH---hH-HHHHHHHhc--CCCEEEEEEchHhccccCh-h--hHHHHHHHHhC--CCEEEEEcCCC
Confidence            8999999999987543   33 477777665  7999999999998643332 1  12456666666  37999999999


Q ss_pred             CChhHHHHHHHHHH
Q 006490          162 IQVPDVFYYAQKAV  175 (643)
Q Consensus       162 ~gi~~l~~~i~~~~  175 (643)
                      .|++++|+++.+.+
T Consensus       150 ~~v~~l~~~l~~~~  163 (165)
T 2wji_A          150 MGIEELKKAISIAV  163 (165)
T ss_dssp             BSHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999988764

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.86  E-value=6.6e-22  Score=186.42  Aligned_cols=162  Identities=14%  Similarity=0.128  Sum_probs=118.4

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcC--CCCCCCCCCcccceEEEEEEc---CCCcEEEEEEecCCchhhhhhhccHHhhcc
Q 006490          423 VFRCLLFGPQNAGKSALLNSFLER--PFSENYAPTTGEQYAVNVVDQ---PGGNKKTLILQEIPEEGVKKILSNKEALAS  497 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~~~--~~~~~~~~t~~~~~~~~~v~~---~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~  497 (643)
                      .+||+|+|++|||||||+++|++.  .+...+.+|++.++....+..   .+....+.+||++|++.+..+  ...+++.
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~   79 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYST--HPHFMTQ   79 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTT--SHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHh--hHHHccC
Confidence            479999999999999999999995  344445567665554444333   224557789999999988877  6788899


Q ss_pred             CCEEEEEEeCCCh-hhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccH----HHHHHHHHHhCCC---CcEE
Q 006490          498 CDVTIFVYDSSDE-YSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAV----QDSARVTQELGIE---PPIP  569 (643)
Q Consensus       498 ad~illv~D~s~~-~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~----~~~~~~~~~~~~~---~~~~  569 (643)
                      +|++++|||++++ .+++.+..|+..+.....    +.|+++|+||+|+.......    +..+.+++.++++   ++++
T Consensus        80 ~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (184)
T 2zej_A           80 RALYLAVYDLSKGQAEVDAMKPWLFNIKARAS----SSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHF  155 (184)
T ss_dssp             SEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCT----TCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEE
T ss_pred             CcEEEEEEeCCcchhHHHHHHHHHHHHHhhCC----CCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEE
Confidence            9999999999997 578889999998876543    78999999999998654332    2334555556664   3899


Q ss_pred             eeeccC--CHHHHHHHHHHHHhC
Q 006490          570 VSMKSK--DLNNVFSRIIWAAEH  590 (643)
Q Consensus       570 vSa~~g--~i~~l~~~l~~~~~~  590 (643)
                      +||++|  |++++++.|.+.+..
T Consensus       156 ~Sa~~~~~~~~~l~~~i~~~~~~  178 (184)
T 2zej_A          156 VNATEESDALAKLRKTIINESLN  178 (184)
T ss_dssp             CCTTSCCHHHHHHHHHHHHHHHC
T ss_pred             EecccCchhHHHHHHHHHHHHhc
Confidence            999998  699999999988764

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.86  E-value=2.4e-21  Score=179.08  Aligned_cols=152  Identities=18%  Similarity=0.222  Sum_probs=112.8

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhh------hhhccHHhhc
Q 006490          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK------KILSNKEALA  496 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~------~~~~~~~~~~  496 (643)
                      .++|+++|++|||||||+|+|++..+...+.|+++.+.....+...  ...+.+|||+|++.+.      .+  ...+++
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~--~~~~~~   78 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYN--GEKFKVVDLPGVYSLTANSIDEII--ARDYII   78 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEET--TEEEEEEECCCCSCSSSSSHHHHH--HHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEEC--CcEEEEEECCCcccCCCcchhHHH--HHHHHh
Confidence            4799999999999999999999987654444554444444445554  3578899999987653      22  234443


Q ss_pred             --cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeecc
Q 006490          497 --SCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKS  574 (643)
Q Consensus       497 --~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~  574 (643)
                        ++|++++|+|+++..   ....|+..+.+.      +.|+++|+||+|+...+......+++++.++++ ++++||++
T Consensus        79 ~~~~~~~i~v~D~~~~~---~~~~~~~~~~~~------~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~SA~~  148 (165)
T 2wji_A           79 NEKPDLVVNIVDATALE---RNLYLTLQLMEM------GANLLLALNKMDLAKSLGIEIDVDKLEKILGVK-VVPLSAAK  148 (165)
T ss_dssp             HHCCSEEEEEEETTCHH---HHHHHHHHHHHT------TCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSC-EEECBGGG
T ss_pred             cCCCCEEEEEecCCchh---HhHHHHHHHHhc------CCCEEEEEEchHhccccChhhHHHHHHHHhCCC-EEEEEcCC
Confidence              899999999999853   345577766653      799999999999865433333567888888876 99999999


Q ss_pred             C-CHHHHHHHHHHHH
Q 006490          575 K-DLNNVFSRIIWAA  588 (643)
Q Consensus       575 g-~i~~l~~~l~~~~  588 (643)
                      | |++++|++|.+.+
T Consensus       149 ~~~v~~l~~~l~~~~  163 (165)
T 2wji_A          149 KMGIEELKKAISIAV  163 (165)
T ss_dssp             TBSHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHh
Confidence            9 9999999998865

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.86  E-value=1.9e-21  Score=181.96  Aligned_cols=164  Identities=16%  Similarity=0.115  Sum_probs=115.5

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEE
Q 006490            8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (643)
Q Consensus         8 ~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il   87 (643)
                      ...+.++|+|+|++|||||||+|+|++..+.....+..+.......+..++..+.+|||||++.+...+..++..+|++|
T Consensus         4 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   83 (178)
T 2lkc_A            4 MVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVI   83 (178)
T ss_dssp             TCCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred             cCCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence            34567899999999999999999999988765433222222222334445678999999999998888888999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhh---hHHHHhhcccceEEEeCcccCCCh
Q 006490           88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVM---GPIMQQFREIETCVECSATTMIQV  164 (643)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~Sa~~~~gi  164 (643)
                      +|+|++++.......  ++..+...  ++|+++|+||+|+...... ......   ..+...++...++++|||++|.|+
T Consensus        84 ~v~d~~~~~~~~~~~--~l~~~~~~--~~p~ilv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv  158 (178)
T 2lkc_A           84 LVVAADDGVMPQTVE--AINHAKAA--NVPIIVAINKMDKPEANPD-RVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGL  158 (178)
T ss_dssp             EEEETTCCCCHHHHH--HHHHHGGG--SCCEEEEEETTTSSCSCHH-HHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHH
T ss_pred             EEEECCCCCcHHHHH--HHHHHHhC--CCCEEEEEECccCCcCCHH-HHHHHHHhcCcChhHcCCcccEEEEecCCCCCH
Confidence            999998865444432  33444433  7999999999999763211 111111   111111211136999999999999


Q ss_pred             hHHHHHHHHHHh
Q 006490          165 PDVFYYAQKAVL  176 (643)
Q Consensus       165 ~~l~~~i~~~~~  176 (643)
                      +++|+++.+.+.
T Consensus       159 ~~l~~~l~~~~~  170 (178)
T 2lkc_A          159 DHLLEMILLVSE  170 (178)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhh
Confidence            999999988764

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.86  E-value=6.1e-21  Score=194.50  Aligned_cols=166  Identities=17%  Similarity=0.160  Sum_probs=126.7

Q ss_pred             CCCCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCCCCCeeeCCcccCC-ceeEEEEeCCCCCcch---------
Q 006490            6 GSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEK--VPPVHAPTRLPPDFYPD-RVPVTIIDTSSSLENK---------   73 (643)
Q Consensus         6 ~~~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~i~Dt~G~~~~~---------   73 (643)
                      .+..++.-.|+|+|+||||||||+|+|++..+...  .++++. ......+... +..+.||||||+....         
T Consensus         4 ~~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~-~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~   82 (308)
T 3iev_A            4 HHHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTR-MRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSM   82 (308)
T ss_dssp             ---CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCC-SCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHH
T ss_pred             CCCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCcee-eEEEEEEecCCCCeEEEEECcCCCccccchhHHHHH
Confidence            44566778999999999999999999999986432  333221 1233334445 7899999999997644         


Q ss_pred             -hhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccce
Q 006490           74 -GKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIET  152 (643)
Q Consensus        74 -~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (643)
                       .....+++.+|++|+|+|++++.+..... .|++.+...  ++|+++|+||+|+.....  ...+....+.+.++...+
T Consensus        83 ~~~~~~~l~~aD~il~VvD~~~~~~~~~~~-~~~~~l~~~--~~pvilV~NK~Dl~~~~~--~~~~~~~~l~~~~~~~~~  157 (308)
T 3iev_A           83 VEIAKQSLEEADVILFMIDATEGWRPRDEE-IYQNFIKPL--NKPVIVVINKIDKIGPAK--NVLPLIDEIHKKHPELTE  157 (308)
T ss_dssp             HHHHHHHHHHCSEEEEEEETTTBSCHHHHH-HHHHHTGGG--CCCEEEEEECGGGSSSGG--GGHHHHHHHHHHCTTCCC
T ss_pred             HHHHHHHhhcCCEEEEEEeCCCCCCchhHH-HHHHHHHhc--CCCEEEEEECccCCCCHH--HHHHHHHHHHHhccCCCe
Confidence             45557899999999999999998888866 478888775  899999999999974322  244556677777754557


Q ss_pred             EEEeCcccCCChhHHHHHHHHHHhC
Q 006490          153 CVECSATTMIQVPDVFYYAQKAVLH  177 (643)
Q Consensus       153 ~~~~Sa~~~~gi~~l~~~i~~~~~~  177 (643)
                      ++++||++|.|++++++.+.+.+..
T Consensus       158 i~~vSA~~g~gv~~L~~~l~~~l~~  182 (308)
T 3iev_A          158 IVPISALKGANLDELVKTILKYLPE  182 (308)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHSCB
T ss_pred             EEEEeCCCCCCHHHHHHHHHHhCcc
Confidence            9999999999999999999988754

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.86  E-value=2.2e-23  Score=199.23  Aligned_cols=162  Identities=18%  Similarity=0.257  Sum_probs=119.6

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-ee-eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEE
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il   87 (643)
                      ...+||+|+|++|||||||+|+|++..+.....++.+. .. ....+....+.+.+|||||++.+...+..+++.+|++|
T Consensus        31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  110 (199)
T 3l0i_B           31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII  110 (199)
T ss_dssp             SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence            45689999999999999999999998875542222222 22 22334445578999999999998888889999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhH
Q 006490           88 LTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (643)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  166 (643)
                      +|||++++.+++.+. .|+..+.... .++|+++|+||+|+...+.+  ..+....++..++  .+++++||++|.||++
T Consensus       111 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v--~~~~~~~~~~~~~--~~~~~vSA~~g~gv~~  185 (199)
T 3l0i_B          111 VVYDVTDQESFNNVK-QWLQEIDRYASENVNKLLVGNKCDLTTKKVV--DYTTAKEFADSLG--IPFLETSAKNATNVEQ  185 (199)
T ss_dssp             ECC-CCCSHHHHHHH-HHHHHHHSCC-CCSEEEEC-CCSSCC--CCC--CSCC-CHHHHTTT--CCBCCCCC---HHHHH
T ss_pred             EEEECCCHHHHHHHH-HHHHHHHHhccCCCCEEEEEECccCCccccC--CHHHHHHHHHHcC--CeEEEEECCCCCCHHH
Confidence            999999999999987 4988887654 47999999999999765544  2234466666665  3699999999999999


Q ss_pred             HHHHHHHHHh
Q 006490          167 VFYYAQKAVL  176 (643)
Q Consensus       167 l~~~i~~~~~  176 (643)
                      +|+++.+.+.
T Consensus       186 l~~~l~~~l~  195 (199)
T 3l0i_B          186 SFMTMAAEIK  195 (199)
T ss_dssp             HHHHHTTTTT
T ss_pred             HHHHHHHHHH
Confidence            9999876543

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.86  E-value=9.5e-22  Score=184.91  Aligned_cols=160  Identities=14%  Similarity=0.137  Sum_probs=115.1

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v   89 (643)
                      ++.+||+|+|++|||||||+|+|+++.+....+ +.+....  .+..++..+.+|||||++.+...+..+++.+|++++|
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~-t~~~~~~--~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEVVTTKP-TIGFNVE--TLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFV   92 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEEEEECS-STTCCEE--EEEETTEEEEEEEEC----CCTTGGGTTTTEEEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCcCccCC-cCccceE--EEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEE
Confidence            568999999999999999999999877632223 2222222  2233468999999999998888889999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCCCCCccchhhhhhhHHHHh-hc-ccceEEEeCcccCCChh
Q 006490           90 YACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQ-FR-EIETCVECSATTMIQVP  165 (643)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~Sa~~~~gi~  165 (643)
                      +|++++.+++.+.. |+..+...  ..++|+++|+||+|+......   ++..+.+... .. ...++++|||++|.|++
T Consensus        93 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  168 (183)
T 1moz_A           93 VDSTDKDRMSTASK-ELHLMLQEEELQDAALLVFANKQDQPGALSA---SEVSKELNLVELKDRSWSIVASSAIKGEGIT  168 (183)
T ss_dssp             EETTCTTTHHHHHH-HHHHHTTSSTTSSCEEEEEEECTTSTTCCCH---HHHHHHTTTTTCCSSCEEEEEEBGGGTBTHH
T ss_pred             EECCCHHHHHHHHH-HHHHHHcChhhCCCeEEEEEECCCCCCCCCH---HHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence            99999999999875 66666543  358999999999999764221   1111111100 00 11268999999999999


Q ss_pred             HHHHHHHHHHh
Q 006490          166 DVFYYAQKAVL  176 (643)
Q Consensus       166 ~l~~~i~~~~~  176 (643)
                      ++++++.+.+.
T Consensus       169 ~l~~~l~~~~~  179 (183)
T 1moz_A          169 EGLDWLIDVIK  179 (183)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988754

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.86  E-value=2.2e-21  Score=200.88  Aligned_cols=167  Identities=25%  Similarity=0.335  Sum_probs=133.0

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEE
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (643)
                      ...+||+++|++|||||||+++|+++.+...+.++.+... ....+....+.+.+|||||++.+......+++.+|++++
T Consensus       153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~  232 (332)
T 2wkq_A          153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI  232 (332)
T ss_dssp             TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred             cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence            4568999999999999999999999888766555443322 233444556778899999999998888999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCC-----------ccchhhhhhhHHHHhhcccceEEEeC
Q 006490           89 TYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH-----------NATSLEEVMGPIMQQFREIETCVECS  157 (643)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~S  157 (643)
                      |||++++.+++.+...|...+....+++|+++|+||+|+....           .. ...+....+++.++. .++++||
T Consensus       233 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~-~~~~~~S  310 (332)
T 2wkq_A          233 CFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTP-ITYPQGLAMAKEIGA-VKYLECS  310 (332)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCC-CCHHHHHHHHHHTTC-SEEEECC
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhcccccccc-ccHHHHHHHHHHcCC-cEEEEec
Confidence            9999999999998767999998877789999999999986531           11 123344566666652 3699999


Q ss_pred             cccCCChhHHHHHHHHHHhCC
Q 006490          158 ATTMIQVPDVFYYAQKAVLHP  178 (643)
Q Consensus       158 a~~~~gi~~l~~~i~~~~~~~  178 (643)
                      |++|.||+++|+.+.+.++.+
T Consensus       311 a~~~~gi~~l~~~l~~~~~~~  331 (332)
T 2wkq_A          311 ALTQRGLKTVFDEAIRAVLCP  331 (332)
T ss_dssp             TTTCTTHHHHHHHHHHHHHC-
T ss_pred             CCCCcCHHHHHHHHHHHHhcC
Confidence            999999999999999887654

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.86  E-value=1.4e-20  Score=191.83  Aligned_cols=176  Identities=19%  Similarity=0.216  Sum_probs=131.3

Q ss_pred             cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-C-CcccceEEEEEEcCCCcEEEEEEecCCchhhh------h-h-h
Q 006490          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-P-TTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK------K-I-L  489 (643)
Q Consensus       420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~-~-t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~------~-~-~  489 (643)
                      ....-.|+|+|+||||||||+|+|++.++..++. + |+.. ........+ ....+.+|||+|.....      . + .
T Consensus         7 ~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~-~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~~   84 (308)
T 3iev_A            7 HMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRM-RVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMVE   84 (308)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCS-CEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceee-EEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHHH
Confidence            3445689999999999999999999999887665 3 3333 222333332 26778899999974332      1 1 1


Q ss_pred             ccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCC-CccccHHHHHHHHHHhC-CCCc
Q 006490          490 SNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLK-PYTMAVQDSARVTQELG-IEPP  567 (643)
Q Consensus       490 ~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~-~~~~~~~~~~~~~~~~~-~~~~  567 (643)
                      .+..++..+|++++|+|++++.+++....|+..+...      +.|+++|+||+|+. ......+..+.+.+.++ +.++
T Consensus        85 ~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~------~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i  158 (308)
T 3iev_A           85 IAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL------NKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEI  158 (308)
T ss_dssp             HHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG------CCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCE
T ss_pred             HHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc------CCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeE
Confidence            1567889999999999999988878777667776653      79999999999998 54555677788888884 5569


Q ss_pred             EEeeeccC-CHHHHHHHHHHHHhC-CCCCCCCcccccc
Q 006490          568 IPVSMKSK-DLNNVFSRIIWAAEH-PHLNIPETETGRN  603 (643)
Q Consensus       568 ~~vSa~~g-~i~~l~~~l~~~~~~-~~~~~~~~~~~~~  603 (643)
                      +++||++| |++++++.+.+.+.. +..+.++..+...
T Consensus       159 ~~vSA~~g~gv~~L~~~l~~~l~~~~~~~~~~~~td~~  196 (308)
T 3iev_A          159 VPISALKGANLDELVKTILKYLPEGEPLFPEDMITDLP  196 (308)
T ss_dssp             EECBTTTTBSHHHHHHHHHHHSCBCCCSSCTTCCBCCC
T ss_pred             EEEeCCCCCCHHHHHHHHHHhCccCCCCCCcccccCCC
Confidence            99999999 999999999998854 3334444444433

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.86  E-value=4.7e-22  Score=187.47  Aligned_cols=164  Identities=13%  Similarity=0.213  Sum_probs=114.3

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcC--CCCCCCCCCCCCee--eCCcc---cCCceeEEEEeCCCCCcchhhhHHhhccCC
Q 006490           12 GVRVVVVGDRGTGKSSLIAAAATE--SVPEKVPPVHAPTR--LPPDF---YPDRVPVTIIDTSSSLENKGKLNEELKRAD   84 (643)
Q Consensus        12 ~~kI~lvG~~~vGKSsL~n~l~~~--~~~~~~~~~~~~~~--~~~~~---~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad   84 (643)
                      .+||+|+|++|||||||+++|++.  .+...+.++.+...  ....+   ....+.+.+|||+|++++....+.+++.+|
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   81 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA   81 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence            589999999999999999999985  34444333333222  11111   235678999999999988888889999999


Q ss_pred             EEEEEEECCCc-ccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccch--hhhhhhHHHHhhcc--cceEEEeCcc
Q 006490           85 AVVLTYACNQQ-STLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEVMGPIMQQFRE--IETCVECSAT  159 (643)
Q Consensus        85 ~il~v~d~~~~-~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~Sa~  159 (643)
                      ++++|||++++ .+++.+. .|+..+....++.|+++|+||+|+...... .  ..+..+.+++.++.  ...++++||+
T Consensus        82 ~~i~v~d~~~~~~s~~~~~-~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  159 (184)
T 2zej_A           82 LYLAVYDLSKGQAEVDAMK-PWLFNIKARASSSPVILVGTHLDVSDEKQR-KACMSKITKELLNKRGFPAIRDYHFVNAT  159 (184)
T ss_dssp             EEEEEEEGGGCHHHHHTHH-HHHHHHHHHCTTCEEEEEEECGGGCCHHHH-HHHHHHHHHHTTTCTTSCEEEEEEECCTT
T ss_pred             EEEEEEeCCcchhHHHHHH-HHHHHHHhhCCCCcEEEEEECCCcccchhh-HHHHHHHHHHHHHhcCCcchhheEEEecc
Confidence            99999999987 5788776 599888776668999999999998754221 1  01222334433431  1138999999


Q ss_pred             cCC-ChhHHHHHHHHHHhC
Q 006490          160 TMI-QVPDVFYYAQKAVLH  177 (643)
Q Consensus       160 ~~~-gi~~l~~~i~~~~~~  177 (643)
                      +|. |++++++.+.+.+..
T Consensus       160 ~~~~~~~~l~~~i~~~~~~  178 (184)
T 2zej_A          160 EESDALAKLRKTIINESLN  178 (184)
T ss_dssp             SCCHHHHHHHHHHHHHHHC
T ss_pred             cCchhHHHHHHHHHHHHhc
Confidence            996 999999999887654

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.86  E-value=2.1e-21  Score=183.71  Aligned_cols=160  Identities=19%  Similarity=0.194  Sum_probs=121.3

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (643)
                      +..+||+++|++|||||||+|+|+++.+.. +.||.+..  ...+...  ...+.+||++|++.+..+  +..+++.+|+
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~Dt~G~~~~~~~--~~~~~~~~d~   92 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVN--LETLQYK--NISFEVWDLGGQTGVRPY--WRCYFSDTDA   92 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCC--EEEEEET--TEEEEEEEECCSSSSCCC--CSSSSTTCCE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceE--EEEEEEC--CEEEEEEECCCCHhHHHH--HHHHhhcCCE
Confidence            356899999999999999999999887653 44665532  3334443  467889999999887776  6678899999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHH----HHhCCCCcEEeeeccC-
Q 006490          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVT----QELGIEPPIPVSMKSK-  575 (643)
Q Consensus       501 illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~vSa~~g-  575 (643)
                      +++|+|++++.+++....|+..+.......  +.|+++|+||+|+.......+..+.+.    ...++ ++++|||++| 
T Consensus        93 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  169 (189)
T 2x77_A           93 VIYVVDSTDRDRMGVAKHELYALLDEDELR--KSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTW-TIVKSSSKTGD  169 (189)
T ss_dssp             EEEEEETTCCTTHHHHHHHHHHHHTCSTTT--TCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCE-EEEECCTTTCT
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHhhhhcC--CCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCce-EEEEccCCCcc
Confidence            999999999999999988888876643322  799999999999976432211111111    11223 4899999999 


Q ss_pred             CHHHHHHHHHHHHhC
Q 006490          576 DLNNVFSRIIWAAEH  590 (643)
Q Consensus       576 ~i~~l~~~l~~~~~~  590 (643)
                      |+++++++|.+.+..
T Consensus       170 gi~~l~~~l~~~i~~  184 (189)
T 2x77_A          170 GLVEGMDWLVERLRE  184 (189)
T ss_dssp             THHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHh
Confidence            999999999998753

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.86  E-value=4.1e-21  Score=180.52  Aligned_cols=156  Identities=20%  Similarity=0.206  Sum_probs=117.2

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (643)
                      +..+||+++|++|||||||+|+|+++++ ..+.||.+..  ...+...  ...+.+||++|++.+..+  +..+++.+|+
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~--~~~~~~~--~~~~~i~Dt~G~~~~~~~--~~~~~~~~d~   88 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN--VETLSYK--NLKLNVWDLGGQTSIRPY--WRCYYADTAA   88 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC--EEEEEET--TEEEEEEEEC----CCTT--GGGTTTTEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc--eEEEEEC--CEEEEEEECCCCHhHHHH--HHHHhccCCE
Confidence            4579999999999999999999998877 3444565533  3334444  367889999999887776  6788899999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCC-------CcEEeeec
Q 006490          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE-------PPIPVSMK  573 (643)
Q Consensus       501 illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-------~~~~vSa~  573 (643)
                      +++|+|++++.+++....|+..+.......  +.|+++|+||+|+.....    .+++.+..+..       ++++|||+
T Consensus        89 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~~----~~~i~~~~~~~~~~~~~~~~~~~Sa~  162 (183)
T 1moz_A           89 VIFVVDSTDKDRMSTASKELHLMLQEEELQ--DAALLVFANKQDQPGALS----ASEVSKELNLVELKDRSWSIVASSAI  162 (183)
T ss_dssp             EEEEEETTCTTTHHHHHHHHHHHTTSSTTS--SCEEEEEEECTTSTTCCC----HHHHHHHTTTTTCCSSCEEEEEEBGG
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHcChhhC--CCeEEEEEECCCCCCCCC----HHHHHHHhCcccccCCceEEEEccCC
Confidence            999999999999999999888876543222  799999999999976322    12233333211       48999999


Q ss_pred             cC-CHHHHHHHHHHHHh
Q 006490          574 SK-DLNNVFSRIIWAAE  589 (643)
Q Consensus       574 ~g-~i~~l~~~l~~~~~  589 (643)
                      +| |+++++++|.+.+.
T Consensus       163 ~~~gi~~l~~~l~~~~~  179 (183)
T 1moz_A          163 KGEGITEGLDWLIDVIK  179 (183)
T ss_dssp             GTBTHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHH
Confidence            99 99999999998764

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.85  E-value=2.8e-21  Score=198.83  Aligned_cols=163  Identities=12%  Similarity=0.113  Sum_probs=118.0

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEE
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (643)
                      .++.+||+|+|++|||||||+++|++..+....|+ .+.  ....+...++.+.||||||++.+...+..+++.+|++|+
T Consensus       162 ~~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~pT-~~~--~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil  238 (329)
T 3o47_A          162 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPT-IGF--NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF  238 (329)
T ss_dssp             -CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEEEE-TTE--EEEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred             ccCcceEEEECCCCccHHHHHHHHhCCCCCCcccc-cce--EEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence            34568999999999999999999999887554442 111  222345577899999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhh--cccceEEEeCcccCCChh
Q 006490           89 TYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF--REIETCVECSATTMIQVP  165 (643)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~gi~  165 (643)
                      |||++++.+++.+...|...+... ..++|++||+||+|+......   .+....+....  ....++++|||++|.||+
T Consensus       239 V~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~---~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~  315 (329)
T 3o47_A          239 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNA---AEITDKLGLHSLRHRNWYIQATCATSGDGLY  315 (329)
T ss_dssp             EEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH---HHHHHHHTCTTCCSSCEEEEECBTTTTBTHH
T ss_pred             EEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCH---HHHHHHhchhhhhcCCCEEEEEECCCCcCHH
Confidence            999999999999986555555433 258999999999999764322   11111111111  011258999999999999


Q ss_pred             HHHHHHHHHHhC
Q 006490          166 DVFYYAQKAVLH  177 (643)
Q Consensus       166 ~l~~~i~~~~~~  177 (643)
                      ++|+.+.+.+..
T Consensus       316 el~~~l~~~l~~  327 (329)
T 3o47_A          316 EGLDWLSNQLRN  327 (329)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHh
Confidence            999999987653

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.85  E-value=2.8e-20  Score=177.63  Aligned_cols=162  Identities=19%  Similarity=0.345  Sum_probs=134.1

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i  501 (643)
                      ..+||+|+|++|||||||+++|++..+...+.||.+.++....+.+.|....+.+||++|++.+..+  ...+++.+|++
T Consensus         4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~--~~~~~~~~~~~   81 (199)
T 2f9l_A            4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRI--TSAYYRGAVGA   81 (199)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCC--CHHHHTTCSEE
T ss_pred             ceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhh--hHHHHhcCCEE
Confidence            4689999999999999999999999988888888777777777777866667889999999887766  67778899999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHH
Q 006490          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNN  579 (643)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~  579 (643)
                      ++|+|+++..+++.+..|+..+......   +.|+++|+||+|+...... .+.+..++...++. ++++||+++ |+++
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~-~~d~Sal~~~~i~~  157 (199)
T 2f9l_A           82 LLVYDIAKHLTYENVERWLKELRDHADS---NIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLS-FIETSALDSTNVEE  157 (199)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCT---TCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCE-EEECCTTTCTTHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCC---CCeEEEEEECcccccccCcCHHHHHHHHHHcCCe-EEEEeCCCCCCHHH
Confidence            9999999999998888888877654322   6899999999999764333 56678888888886 899999999 9999


Q ss_pred             HHHHHHHHHh
Q 006490          580 VFSRIIWAAE  589 (643)
Q Consensus       580 l~~~l~~~~~  589 (643)
                      +++.|.+.+.
T Consensus       158 l~~~l~~~~~  167 (199)
T 2f9l_A          158 AFKNILTEIY  167 (199)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998764

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.76  E-value=4.3e-23  Score=198.00  Aligned_cols=162  Identities=20%  Similarity=0.345  Sum_probs=130.3

Q ss_pred             cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCC
Q 006490          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (643)
Q Consensus       420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad  499 (643)
                      ....+||+|+|.+|||||||+++|++..+...+.+|+.+.+. ..+...+....+.+||++|++.+..+  +..+++.+|
T Consensus        27 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~d  103 (204)
T 3th5_A           27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQEDYDRL--RPLSYPQTD  103 (204)
Confidence            346799999999999999999999998887777677765443 33445545566779999999888776  677889999


Q ss_pred             EEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcc-------------ccHHHHHHHHHHhCCC
Q 006490          500 VTIFVYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-------------MAVQDSARVTQELGIE  565 (643)
Q Consensus       500 ~illv~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~-------------~~~~~~~~~~~~~~~~  565 (643)
                      ++++|||++++.+++... .|+..+.....    +.|+++|+||+|+....             ...+....+++.+++.
T Consensus       104 ~iilv~D~~~~~s~~~~~~~~~~~l~~~~~----~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  179 (204)
T 3th5_A          104 VFLICFSLVSPASFENVRAKWYPEVRHHCP----NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAV  179 (204)
Confidence            999999999999999886 68777766543    68999999999997642             1245566777788874


Q ss_pred             CcEEeeeccC-CHHHHHHHHHHHH
Q 006490          566 PPIPVSMKSK-DLNNVFSRIIWAA  588 (643)
Q Consensus       566 ~~~~vSa~~g-~i~~l~~~l~~~~  588 (643)
                      ++++|||++| |++++|+.|.+.+
T Consensus       180 ~~~~vSA~~g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          180 KYLECSALTQRGLKTVFDEAIRAV  203 (204)
Confidence            5999999999 9999999988754

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.85  E-value=8.8e-21  Score=196.28  Aligned_cols=165  Identities=21%  Similarity=0.340  Sum_probs=136.4

Q ss_pred             cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCC
Q 006490          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (643)
Q Consensus       420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad  499 (643)
                      .+..++|+++|.+|||||||++++++..+...+.+|+.+.+ ...+...+....+.+||++|++.+..+  ...+++.+|
T Consensus       152 ~~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~d  228 (332)
T 2wkq_A          152 AKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRL--RPLSYPQTD  228 (332)
T ss_dssp             HTTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTT--GGGGCTTCS
T ss_pred             ccceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHH--HHHhccCCC
Confidence            34569999999999999999999999988777777777655 344556656667779999999888776  677899999


Q ss_pred             EEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCc-------------cccHHHHHHHHHHhCCC
Q 006490          500 VTIFVYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPY-------------TMAVQDSARVTQELGIE  565 (643)
Q Consensus       500 ~illv~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~-------------~~~~~~~~~~~~~~~~~  565 (643)
                      ++++|||++++.+|+.+. .|+..+.....    ++|+++|+||+|+...             ....+....+++..++.
T Consensus       229 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  304 (332)
T 2wkq_A          229 VFLICFSLVSPASFHHVRAKWYPEVRHHCP----NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAV  304 (332)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHHCT----TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCS
T ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHhhCC----CCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCc
Confidence            999999999999999887 68888877654    7899999999998653             12256778889999985


Q ss_pred             CcEEeeeccC-CHHHHHHHHHHHHhCC
Q 006490          566 PPIPVSMKSK-DLNNVFSRIIWAAEHP  591 (643)
Q Consensus       566 ~~~~vSa~~g-~i~~l~~~l~~~~~~~  591 (643)
                      ++++|||++| |++++|+.|.+.+..+
T Consensus       305 ~~~~~Sa~~~~gi~~l~~~l~~~~~~~  331 (332)
T 2wkq_A          305 KYLECSALTQRGLKTVFDEAIRAVLCP  331 (332)
T ss_dssp             EEEECCTTTCTTHHHHHHHHHHHHHC-
T ss_pred             EEEEecCCCCcCHHHHHHHHHHHHhcC
Confidence            5999999999 9999999999987643

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.84  E-value=1e-20  Score=184.79  Aligned_cols=165  Identities=14%  Similarity=0.122  Sum_probs=112.5

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCCCCeeeCCcccCCceeEEEEeCCCCCcc---------hhhhHHh
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLEN---------KGKLNEE   79 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~---------~~~~~~~   79 (643)
                      ...+||+|+|++|||||||+|+|++..+... .+++.... ....+...+..+.+|||||+...         ...+..+
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~  105 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNL-YVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITAL  105 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CE-EEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceee-eeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHh
Confidence            4568999999999999999999999876422 22211111 11223335688999999998421         1122345


Q ss_pred             hccCCEEEEEEECCCcccHHHH-HHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhh--hhhhHHHHhhcccceEEEe
Q 006490           80 LKRADAVVLTYACNQQSTLSRL-SSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLE--EVMGPIMQQFREIETCVEC  156 (643)
Q Consensus        80 ~~~ad~il~v~d~~~~~s~~~~-~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  156 (643)
                      +..+|++|+|||++++.+++.. ...|+..+....+++|+++|+||+|+...... ...  +....+....+...++++|
T Consensus       106 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  184 (228)
T 2qu8_A          106 AHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSL-SIDNKLLIKQILDNVKNPIKFSSF  184 (228)
T ss_dssp             HTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CC-CHHHHHHHHHHHHHCCSCEEEEEC
T ss_pred             hccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhh-HHHHHHHHHHHHHhcCCCceEEEE
Confidence            7889999999999998776421 12466677665568999999999999765443 221  2344454444322369999


Q ss_pred             CcccCCChhHHHHHHHHHHh
Q 006490          157 SATTMIQVPDVFYYAQKAVL  176 (643)
Q Consensus       157 Sa~~~~gi~~l~~~i~~~~~  176 (643)
                      ||++|.||+++|+++.+.+.
T Consensus       185 SA~~g~gi~~l~~~l~~~i~  204 (228)
T 2qu8_A          185 STLTGVGVEQAKITACELLK  204 (228)
T ss_dssp             CTTTCTTHHHHHHHHHHHHH
T ss_pred             ecccCCCHHHHHHHHHHHHH
Confidence            99999999999999988764

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.84  E-value=7.5e-20  Score=201.23  Aligned_cols=163  Identities=19%  Similarity=0.209  Sum_probs=116.1

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeee--------CCcc--cCCceeEEEEeCCCCCcchhhhH
Q 006490            8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRL--------PPDF--YPDRVPVTIIDTSSSLENKGKLN   77 (643)
Q Consensus         8 ~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~--------~~~~--~~~~~~~~i~Dt~G~~~~~~~~~   77 (643)
                      .....+||+|+|++|||||||+|+|++..+.....++.+....        ...+  ...++.+.+|||||++.+.....
T Consensus        37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~  116 (535)
T 3dpu_A           37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ  116 (535)
T ss_dssp             BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence            3567799999999999999999999999876654444433321        1222  23478999999999999999999


Q ss_pred             HhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeC
Q 006490           78 EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECS  157 (643)
Q Consensus        78 ~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  157 (643)
                      .+++.+|++|+|||+++.+.   .. +|...+...++++|+|+|+||+|+...... . .+........++  .++++||
T Consensus       117 ~~l~~~d~ii~V~D~s~~~~---~~-~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v-~-~~~~~~~~~~~~--~~~~~vS  188 (535)
T 3dpu_A          117 FFMTRSSVYMLLLDSRTDSN---KH-YWLRHIEKYGGKSPVIVVMNKIDENPSYNI-E-QKKINERFPAIE--NRFHRIS  188 (535)
T ss_dssp             HHHHSSEEEEEEECGGGGGG---HH-HHHHHHHHHSSSCCEEEEECCTTTCTTCCC-C-HHHHHHHCGGGT--TCEEECC
T ss_pred             HHccCCcEEEEEEeCCCchh---HH-HHHHHHHHhCCCCCEEEEEECCCccccccc-C-HHHHHHHHHhcC--CceEEEe
Confidence            99999999999999876643   33 599999888778999999999999865544 2 233444444444  2699999


Q ss_pred             cccCCChhHHHHHHHHHHhCC
Q 006490          158 ATTMIQVPDVFYYAQKAVLHP  178 (643)
Q Consensus       158 a~~~~gi~~l~~~i~~~~~~~  178 (643)
                      |++|.||+++++.+.+.+...
T Consensus       189 A~~g~gi~eL~~~l~~~~~~~  209 (535)
T 3dpu_A          189 CKNGDGVESIAKSLKSAVLHP  209 (535)
T ss_dssp             C-----CTTHHHHHHHHHTCT
T ss_pred             cCcccCHHHHHHHHHHHHhcc
Confidence            999999999999999988654

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.84  E-value=5.8e-20  Score=174.17  Aligned_cols=162  Identities=20%  Similarity=0.344  Sum_probs=136.1

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (643)
                      ...++|+|+|++|||||||+++|++..+...+.||.+.++....+.+.|......+||++|.+.+..+  ...+++.+++
T Consensus        27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~--~~~~~~~~~~  104 (191)
T 1oix_A           27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAI--TSAYYRGAVG  104 (191)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCC--CHHHHTTCCE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhh--hHHHhhcCCE
Confidence            45689999999999999999999999988888888887777777778765566778999998877666  6778889999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHH
Q 006490          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLN  578 (643)
Q Consensus       501 illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~  578 (643)
                      +++|+|+++..+++.+..|+..+......   +.|+++|+||+|+.+.... ...+..++...++. ++.+||+++ |++
T Consensus       105 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~-~ld~Sald~~~v~  180 (191)
T 1oix_A          105 ALLVYDIAKHLTYENVERWLKELRDHADS---NIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLS-FIETSALDSTNVE  180 (191)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCT---TCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEECCTTTCTTHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCC---CCcEEEEEECcccccccccCHHHHHHHHHHcCCE-EEEEeCCCCCCHH
Confidence            99999999999988888888777654322   6899999999999764333 56778888888886 899999999 999


Q ss_pred             HHHHHHHHHH
Q 006490          579 NVFSRIIWAA  588 (643)
Q Consensus       579 ~l~~~l~~~~  588 (643)
                      ++|+.|.+.+
T Consensus       181 ~l~~~l~~~i  190 (191)
T 1oix_A          181 AAFQTILTEI  190 (191)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999998764

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.84  E-value=1.2e-20  Score=179.23  Aligned_cols=159  Identities=13%  Similarity=0.094  Sum_probs=106.7

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCC----------CcchhhhHH
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSS----------LENKGKLNE   78 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~----------~~~~~~~~~   78 (643)
                      ..+.++|+|+|++|||||||+|+|++..+.....++.+.+.....+.. +..+.+|||||.          +.+...+..
T Consensus        20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~   98 (195)
T 1svi_A           20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII-NDELHFVDVPGYGFAKVSKSEREAWGRMIET   98 (195)
T ss_dssp             CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE-TTTEEEEECCCBCCCSSCHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE-CCcEEEEECCCCCccccCHHHHHHHHHHHHH
Confidence            345789999999999999999999998754443333332221111111 236999999994          344455667


Q ss_pred             hhccC---CEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcc--cceE
Q 006490           79 ELKRA---DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE--IETC  153 (643)
Q Consensus        79 ~~~~a---d~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~--~~~~  153 (643)
                      +++.+   |++++|+|++++.+.....  +..++...  ++|+++|+||+|+......   ....+.+.+.+..  ..++
T Consensus        99 ~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~~--~~p~i~v~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~  171 (195)
T 1svi_A           99 YITTREELKAVVQIVDLRHAPSNDDVQ--MYEFLKYY--GIPVIVIATKADKIPKGKW---DKHAKVVRQTLNIDPEDEL  171 (195)
T ss_dssp             HHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHHHT--TCCEEEEEECGGGSCGGGH---HHHHHHHHHHHTCCTTSEE
T ss_pred             HHhhhhcCCEEEEEEECCCCCCHHHHH--HHHHHHHc--CCCEEEEEECcccCChHHH---HHHHHHHHHHHcccCCCce
Confidence            77776   9999999999988877643  55566554  8999999999999764332   2222333333321  2479


Q ss_pred             EEeCcccCCChhHHHHHHHHHH
Q 006490          154 VECSATTMIQVPDVFYYAQKAV  175 (643)
Q Consensus       154 ~~~Sa~~~~gi~~l~~~i~~~~  175 (643)
                      +++||++|.|++++++++.+.+
T Consensus       172 ~~~Sa~~~~gv~~l~~~l~~~l  193 (195)
T 1svi_A          172 ILFSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEEEccCCCCHHHHHHHHHHHh
Confidence            9999999999999999998765

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.83  E-value=4.2e-20  Score=178.45  Aligned_cols=162  Identities=17%  Similarity=0.161  Sum_probs=111.2

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCC-cEEEEEEecCCchhhhh-hhccHHhhccC
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGG-NKKTLILQEIPEEGVKK-ILSNKEALASC  498 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~-~~~~~i~d~~g~~~~~~-~~~~~~~~~~a  498 (643)
                      +..+||+|+|.+|||||||+++|++..+...+.+++ ..+..  +..++. ...+.+||++|++.+.. +  ...+++.+
T Consensus         5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~~   79 (214)
T 2fh5_B            5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSIT-DSSAI--YKVNNNRGNSLTLIDLPGHESLRFQL--LDRFKSSA   79 (214)
T ss_dssp             ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCS-CEEEE--EECSSTTCCEEEEEECCCCHHHHHHH--HHHHGGGE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcc-eeeEE--EEecCCCccEEEEEECCCChhHHHHH--HHHHHhhC
Confidence            346899999999999999999999998877665433 33332  555543 57788999999998876 5  56778999


Q ss_pred             CEEEEEEeCCChh-hHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhC--------------
Q 006490          499 DVTIFVYDSSDEY-SWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELG--------------  563 (643)
Q Consensus       499 d~illv~D~s~~~-s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~--------------  563 (643)
                      |++++|||+++.. ++.....++..+.........+.|+++|+||+|+.......+..+.+.+.++              
T Consensus        80 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~  159 (214)
T 2fh5_B           80 RAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLD  159 (214)
T ss_dssp             EEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC-------
T ss_pred             CEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhcccccc
Confidence            9999999999853 4555555444433221101116899999999999865433222222222211              


Q ss_pred             -----------------------CCCcEEeeeccC-------CHHHHHHHHHHH
Q 006490          564 -----------------------IEPPIPVSMKSK-------DLNNVFSRIIWA  587 (643)
Q Consensus       564 -----------------------~~~~~~vSa~~g-------~i~~l~~~l~~~  587 (643)
                                             ..++++|||++|       |++++|++|.+.
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~  213 (214)
T 2fh5_B          160 SSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI  213 (214)
T ss_dssp             -----CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred             CCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence                                   124899999998       899999999875

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.83  E-value=2.3e-20  Score=177.77  Aligned_cols=160  Identities=13%  Similarity=0.097  Sum_probs=115.2

Q ss_pred             ccCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccce--EEEEEEcC-CCcEEEEEEecCCchhhhhhhcc---H
Q 006490          419 TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQY--AVNVVDQP-GGNKKTLILQEIPEEGVKKILSN---K  492 (643)
Q Consensus       419 ~~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~--~~~~v~~~-g~~~~~~i~d~~g~~~~~~~~~~---~  492 (643)
                      .....+||+++|.+|||||||++++.+.....   +|.+..+  ......+. +....+.+||++|++.+...  .   .
T Consensus        16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~   90 (196)
T 3llu_A           16 FQGSKPRILLMGLRRSGKSSIQKVVFHKMSPN---ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDP--TFDYE   90 (196)
T ss_dssp             ----CCEEEEEESTTSSHHHHHHHHHSCCCGG---GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCT--TCCHH
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHHhcCCCc---ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhh--hhhcc
Confidence            34567899999999999999999988854332   2222111  11222222 45678889999999887665  3   6


Q ss_pred             HhhccCCEEEEEEeCCCh--hhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcc-------cc-HHHHHHHHH--
Q 006490          493 EALASCDVTIFVYDSSDE--YSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-------MA-VQDSARVTQ--  560 (643)
Q Consensus       493 ~~~~~ad~illv~D~s~~--~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~-------~~-~~~~~~~~~--  560 (643)
                      .+++++|++|+|||++++  .+++.+..|+..+.....    +.|+++|+||+|+....       .. .+..+++++  
T Consensus        91 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~----~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~  166 (196)
T 3llu_A           91 MIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNP----DMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAG  166 (196)
T ss_dssp             HHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCT----TCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCC----CCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhh
Confidence            889999999999999997  666677777777654433    79999999999987632       11 344556666  


Q ss_pred             --HhCCCCcEEeeeccCCHHHHHHHHHHHH
Q 006490          561 --ELGIEPPIPVSMKSKDLNNVFSRIIWAA  588 (643)
Q Consensus       561 --~~~~~~~~~vSa~~g~i~~l~~~l~~~~  588 (643)
                        ..++. +++|||++.|++++|+.+++.+
T Consensus       167 ~~~~~~~-~~e~Sa~~~~v~~~f~~l~~~l  195 (196)
T 3llu_A          167 LEKLHLS-FYLTSIYDHSIFEAFSKVVQKL  195 (196)
T ss_dssp             CTTSCEE-EEEECTTSTHHHHHHHHHHHHT
T ss_pred             hhcCCcc-eEEEEechhhHHHHHHHHHHHh
Confidence              45555 9999999978999999998764

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.83  E-value=2.3e-20  Score=199.96  Aligned_cols=203  Identities=16%  Similarity=0.146  Sum_probs=123.5

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCC--CCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhh--------HHh
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATES--VPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKL--------NEE   79 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--------~~~   79 (643)
                      +..++|+|+|+||||||||+|+|++..  ++.+.++++... ....+..+++.+.+|||||+.++....        ..+
T Consensus       231 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~-~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~  309 (476)
T 3gee_A          231 SEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDY-IEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMK  309 (476)
T ss_dssp             HHCEEEEEECCTTSSHHHHHHHCC-------------------CEEEEETTEEEEEEC--------------------CC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEE-EEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence            456899999999999999999999986  344455532221 333455567899999999997755433        246


Q ss_pred             hccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcc
Q 006490           80 LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT  159 (643)
Q Consensus        80 ~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  159 (643)
                      ++.+|++|+|+|++++.+++.+. .+...+.... ++|+++|+||+|+...... .    .+.+.+. + ..++++|||+
T Consensus       310 ~~~aD~vl~VvD~s~~~s~~~~~-~~~~~l~~l~-~~piIvV~NK~Dl~~~~~~-~----~~~l~~~-~-~~~~i~vSAk  380 (476)
T 3gee_A          310 MAEADLILYLLDLGTERLDDELT-EIRELKAAHP-AAKFLTVANKLDRAANADA-L----IRAIADG-T-GTEVIGISAL  380 (476)
T ss_dssp             CSSCSEEEEEEETTTCSSGGGHH-HHHHHHHHCT-TSEEEEEEECTTSCTTTHH-H----HHHHHHH-H-TSCEEECBTT
T ss_pred             cccCCEEEEEEECCCCcchhhhH-HHHHHHHhcC-CCCEEEEEECcCCCCccch-h----HHHHHhc-C-CCceEEEEEC
Confidence            89999999999999998875432 2333444333 7999999999999765332 1    1223332 1 2469999999


Q ss_pred             cCCChhHHHHHHHHHHh-CCC----CCCCccccc-cchHHHHHHHHhhhhhcCCCCCCCCChHHHHHHh
Q 006490          160 TMIQVPDVFYYAQKAVL-HPT----APLFDHDEQ-TLKPRCVRALKRIFIICDHDMDGALNDAELNEFQ  222 (643)
Q Consensus       160 ~~~gi~~l~~~i~~~~~-~~~----~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~l~~~el~~~~  222 (643)
                      +|.||+++++++.+.+. ...    .+.....++ .....+..+|++.....+......+..++++...
T Consensus       381 tg~GI~eL~~~i~~~~~~~~~~~~~~~~~~~~R~~~~l~~a~~~L~~~~~~l~~~~~~dl~a~~lr~a~  449 (476)
T 3gee_A          381 NGDGIDTLKQHMGDLVKNLDKLHEASVLVTSLRHYEALRNASDALQNALELIAHESETELIAFELRAAL  449 (476)
T ss_dssp             TTBSHHHHHHHHTHHHHSSCCCCTTSCCCCSHHHHHHHHHHHHHHHHHHTTTTTTCCSSSHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHhhccCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            99999999999999886 332    122222222 2456667777776665555555566666665543

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.83  E-value=2.2e-21  Score=192.55  Aligned_cols=164  Identities=13%  Similarity=0.161  Sum_probs=114.9

Q ss_pred             cCceEEEEEEcCC---------CCCHHHHHHHHhc---CCCCCCCCCCc-ccceEEE--------EEE------cCCCcE
Q 006490          420 ERNVFRCLLFGPQ---------NAGKSALLNSFLE---RPFSENYAPTT-GEQYAVN--------VVD------QPGGNK  472 (643)
Q Consensus       420 ~~~~~ki~ivG~~---------nvGKSSLln~l~~---~~~~~~~~~t~-~~~~~~~--------~v~------~~g~~~  472 (643)
                      ....+||+|+|.+         |||||||+|+|++   ..+...+.+|+ +.++...        .++      .++...
T Consensus        16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~   95 (255)
T 3c5h_A           16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVEC   95 (255)
T ss_dssp             CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------
T ss_pred             CCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEE
Confidence            4456999999999         9999999999999   55555565654 3222111        111      233455


Q ss_pred             EEEEEe-----------------------cCCchhhhhhhccHHhhc---------------------cCCEEEEEEeCC
Q 006490          473 KTLILQ-----------------------EIPEEGVKKILSNKEALA---------------------SCDVTIFVYDSS  508 (643)
Q Consensus       473 ~~~i~d-----------------------~~g~~~~~~~~~~~~~~~---------------------~ad~illv~D~s  508 (643)
                      .+.+||                       ++|++.+..+  +..+++                     +||++|+|||++
T Consensus        96 ~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t  173 (255)
T 3c5h_A           96 KMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASA--EKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVS  173 (255)
T ss_dssp             CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECT--TCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECB
T ss_pred             EEEEEEccccccccccccccccccccccccchhhhhhhh--hhhhhhccccccccccccccccccccccCCEEEEEEECC
Confidence            677898                       4455444443  333343                     799999999999


Q ss_pred             Ch--hhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHh-CCCCcEEeeeccC-CHHHHHHHH
Q 006490          509 DE--YSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQEL-GIEPPIPVSMKSK-DLNNVFSRI  584 (643)
Q Consensus       509 ~~--~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~vSa~~g-~i~~l~~~l  584 (643)
                      ++  .+|+.+..|+..+.......  ++|+++|+||+|+...+.. +..+++++.. ++. +++|||++| |++++|++|
T Consensus       174 ~~~~~s~~~~~~~l~~i~~~~~~~--~~piilV~NK~Dl~~~~~v-~~~~~~~~~~~~~~-~~e~SAk~g~gv~elf~~l  249 (255)
T 3c5h_A          174 RGMNRNFDDQLKFVSNLYNQLAKT--KKPIVVVLTKCDEGVERYI-RDAHTFALSKKNLQ-VVETSARSNVNVDLAFSTL  249 (255)
T ss_dssp             C----CHHHHHHHHHHHHHHHHHT--TCCEEEEEECGGGBCHHHH-HHHHHHHHTSSSCC-EEECBTTTTBSHHHHHHHH
T ss_pred             CCchhhHHHHHHHHHHHHHHhccC--CCCEEEEEEcccccccHHH-HHHHHHHHhcCCCe-EEEEECCCCCCHHHHHHHH
Confidence            98  99999999998887652111  7999999999999764443 4566677664 554 999999999 999999999


Q ss_pred             HHHHh
Q 006490          585 IWAAE  589 (643)
Q Consensus       585 ~~~~~  589 (643)
                      .+.+.
T Consensus       250 ~~~l~  254 (255)
T 3c5h_A          250 VQLID  254 (255)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            88764

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.83  E-value=1.5e-20  Score=175.05  Aligned_cols=152  Identities=24%  Similarity=0.281  Sum_probs=108.1

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCC--CCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhh--------hHHh
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATESV--PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGK--------LNEE   79 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~~   79 (643)
                      ++.+||+|+|++|||||||+|+|++..+  +...+++.... ....+..++..+.+|||||+..+...        ...+
T Consensus         2 ~~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   80 (172)
T 2gj8_A            2 SHGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDV-LREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQE   80 (172)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSC-EEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceece-eeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHH
Confidence            3568999999999999999999998764  33344432221 22233345667999999998754221        1246


Q ss_pred             hccCCEEEEEEECCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCc
Q 006490           80 LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSA  158 (643)
Q Consensus        80 ~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  158 (643)
                      ++.+|++++|||++++.+++..  .|+..+.... .++|+++|+||+|+......  .       ....+  .++++|||
T Consensus        81 ~~~ad~~i~v~D~~~~~s~~~~--~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~--~-------~~~~~--~~~~~~SA  147 (172)
T 2gj8_A           81 IEQADRVLFMVDGTTTDAVDPA--EIWPEFIARLPAKLPITVVRNKADITGETLG--M-------SEVNG--HALIRLSA  147 (172)
T ss_dssp             HHTCSEEEEEEETTTCCCCSHH--HHCHHHHHHSCTTCCEEEEEECHHHHCCCCE--E-------EEETT--EEEEECCT
T ss_pred             HHhCCEEEEEEECCCCCCHHHH--HHHHHHHHhcccCCCEEEEEECccCCcchhh--h-------hhccC--CceEEEeC
Confidence            8999999999999998887643  4777776543 47999999999998543111  0       01111  36899999


Q ss_pred             ccCCChhHHHHHHHHHH
Q 006490          159 TTMIQVPDVFYYAQKAV  175 (643)
Q Consensus       159 ~~~~gi~~l~~~i~~~~  175 (643)
                      ++|.||+++|+++.+.+
T Consensus       148 ~~g~gv~~l~~~l~~~~  164 (172)
T 2gj8_A          148 RTGEGVDVLRNHLKQSM  164 (172)
T ss_dssp             TTCTTHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            99999999999998765

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.83  E-value=1.8e-20  Score=191.13  Aligned_cols=163  Identities=12%  Similarity=0.126  Sum_probs=120.6

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCC--CCCCCCC-CCCCeeeCCcccCCceeEEEEeCCCCCcc-----hhhhHHhhcc
Q 006490           11 TGVRVVVVGDRGTGKSSLIAAAATES--VPEKVPP-VHAPTRLPPDFYPDRVPVTIIDTSSSLEN-----KGKLNEELKR   82 (643)
Q Consensus        11 ~~~kI~lvG~~~vGKSsL~n~l~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-----~~~~~~~~~~   82 (643)
                      ..+||+|+|++|||||||+|+|+++.  +....++ +.+.......+ .+++.+.+|||||++.+     ...+..++++
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~   80 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRF-LGNMTLNLWDCGGQDVFMENYFTKQKDHIFQM   80 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEE-TTTEEEEEEEECCSHHHHHHHHTTTHHHHHTT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEe-CCceEEEEEECCCcHHHhhhhhhhHHHHHhcc
Confidence            46899999999999999999999874  3332233 22222222222 24789999999999877     6677889999


Q ss_pred             CCEEEEEEECCCcccHHHHHHHHHH---HHHhcCCCCcEEEEEecccCCCCCccc----hhhhhhhHHHHhhcc-cceEE
Q 006490           83 ADAVVLTYACNQQSTLSRLSSYWLP---ELRRLEIKVPIIVAGCKLDLRGDHNAT----SLEEVMGPIMQQFRE-IETCV  154 (643)
Q Consensus        83 ad~il~v~d~~~~~s~~~~~~~~~~---~l~~~~~~~pvilv~NK~D~~~~~~~~----~~~~~~~~~~~~~~~-~~~~~  154 (643)
                      +|++|+|||++++.+++.+. .|..   .+....+++|+++|+||+|+.......    ...+.+..++..++. ..+++
T Consensus        81 ad~vi~V~D~t~~~s~~~l~-~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~  159 (307)
T 3r7w_A           81 VQVLIHVFDVESTEVLKDIE-IFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGF  159 (307)
T ss_dssp             CSEEEEEEETTCSCHHHHHH-HHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEE
T ss_pred             CCEEEEEEECCChhhHHHHH-HHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEE
Confidence            99999999999999999886 3544   444456789999999999997621110    122445677777762 14799


Q ss_pred             EeCcccCCChhHHHHHHHHHHh
Q 006490          155 ECSATTMIQVPDVFYYAQKAVL  176 (643)
Q Consensus       155 ~~Sa~~~~gi~~l~~~i~~~~~  176 (643)
                      ++||++ .|+.++|..+...+.
T Consensus       160 ~tSa~~-~~i~e~~~~iv~~li  180 (307)
T 3r7w_A          160 PTSIWD-ESLYKAWSQIVCSLI  180 (307)
T ss_dssp             ECCTTS-SHHHHHHHHHHHTTC
T ss_pred             EeeecC-ChHHHHHHHHHHHHc
Confidence            999999 899999998887654

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.83  E-value=3.2e-20  Score=173.49  Aligned_cols=159  Identities=18%  Similarity=0.189  Sum_probs=115.1

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (643)
                      ...++|+|+|.+|||||||+|+|++..+...+.++++.+.....+...+  ..+.+||++|++.+..+  ...++..+|+
T Consensus         6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~--~~~~~~~~d~   81 (178)
T 2lkc_A            6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVND--KKITFLDTPGHEAFTTM--RARGAQVTDI   81 (178)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETT--EEEEESCCCSSSSSSCS--CCSSCCCCCE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCC--ceEEEEECCCCHHHHHH--HHHHHhhCCE
Confidence            4568999999999999999999999988776666655545444455553  45678999999888776  5677899999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCC--------CCcEEeee
Q 006490          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGI--------EPPIPVSM  572 (643)
Q Consensus       501 illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~--------~~~~~vSa  572 (643)
                      +++|+|++++...+. ...+..+...      ++|+++|+||+|+....  .+......+..+.        .++++|||
T Consensus        82 ~i~v~d~~~~~~~~~-~~~l~~~~~~------~~p~ilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  152 (178)
T 2lkc_A           82 VILVVAADDGVMPQT-VEAINHAKAA------NVPIIVAINKMDKPEAN--PDRVMQELMEYNLVPEEWGGDTIFCKLSA  152 (178)
T ss_dssp             EEEEEETTCCCCHHH-HHHHHHHGGG------SCCEEEEEETTTSSCSC--HHHHHHHHTTTTCCBTTTTSSEEEEECCS
T ss_pred             EEEEEECCCCCcHHH-HHHHHHHHhC------CCCEEEEEECccCCcCC--HHHHHHHHHhcCcChhHcCCcccEEEEec
Confidence            999999998543222 2223333222      79999999999997632  1222222222221        25899999


Q ss_pred             ccC-CHHHHHHHHHHHHhCCC
Q 006490          573 KSK-DLNNVFSRIIWAAEHPH  592 (643)
Q Consensus       573 ~~g-~i~~l~~~l~~~~~~~~  592 (643)
                      ++| |++++|++|.+.+....
T Consensus       153 ~~~~gv~~l~~~l~~~~~~~~  173 (178)
T 2lkc_A          153 KTKEGLDHLLEMILLVSEMEE  173 (178)
T ss_dssp             SSSHHHHHHHHHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHHHHhhhhhc
Confidence            999 99999999999876443

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.83  E-value=3.8e-20  Score=184.54  Aligned_cols=152  Identities=16%  Similarity=0.144  Sum_probs=114.3

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCC-CCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcch------hhhHHhhc--c
Q 006490           12 GVRVVVVGDRGTGKSSLIAAAATES-VPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENK------GKLNEELK--R   82 (643)
Q Consensus        12 ~~kI~lvG~~~vGKSsL~n~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~------~~~~~~~~--~   82 (643)
                      .++|+|+|+||||||||+|+|++.. ++.++|++.... ....+.. +..+.+|||||+..+.      .....++.  .
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~-~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~   80 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVER-KSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQR   80 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSC-EEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEE-EEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCC
Confidence            5799999999999999999999876 566676543322 2233344 6789999999998764      34455665  6


Q ss_pred             CCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCC
Q 006490           83 ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMI  162 (643)
Q Consensus        83 ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  162 (643)
                      +|++++|+|+++..+.   . +|...+...  ++|+++|+||+|+...... .  .....+.+.++  .+++++||++|.
T Consensus        81 ~d~vi~V~D~t~~e~~---~-~~~~~l~~~--~~p~ilv~NK~Dl~~~~~~-~--~~~~~l~~~lg--~~vi~~SA~~g~  149 (272)
T 3b1v_A           81 ADSILNVVDATNLERN---L-YLTTQLIET--GIPVTIALNMIDVLDGQGK-K--INVDKLSYHLG--VPVVATSALKQT  149 (272)
T ss_dssp             CSEEEEEEEGGGHHHH---H-HHHHHHHHT--CSCEEEEEECHHHHHHTTC-C--CCHHHHHHHHT--SCEEECBTTTTB
T ss_pred             CCEEEEEecCCchHhH---H-HHHHHHHhc--CCCEEEEEEChhhCCcCCc-H--HHHHHHHHHcC--CCEEEEEccCCC
Confidence            9999999998876443   2 466667665  8999999999998654332 1  23456667776  379999999999


Q ss_pred             ChhHHHHHHHHHHh
Q 006490          163 QVPDVFYYAQKAVL  176 (643)
Q Consensus       163 gi~~l~~~i~~~~~  176 (643)
                      ||+++|+++.+.+.
T Consensus       150 gi~el~~~i~~~~~  163 (272)
T 3b1v_A          150 GVDQVVKKAAHTTT  163 (272)
T ss_dssp             SHHHHHHHHHHSCT
T ss_pred             CHHHHHHHHHHHHh
Confidence            99999999988653

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.83  E-value=2.8e-20  Score=184.51  Aligned_cols=155  Identities=17%  Similarity=0.111  Sum_probs=117.5

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhh------hHHhh--
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATESV-PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGK------LNEEL--   80 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~------~~~~~--   80 (643)
                      ++.++|+|+|++|||||||+|+|++..+ +.++|+++ .......+...+..+.+|||||+..+...      ...++  
T Consensus         3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~t-v~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~   81 (258)
T 3a1s_A            3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVT-VEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLK   81 (258)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSC-CEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCce-EEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhh
Confidence            4568999999999999999999999874 33455532 22233445556789999999999876542      24454  


Q ss_pred             ccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCccc
Q 006490           81 KRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATT  160 (643)
Q Consensus        81 ~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  160 (643)
                      ..+|++++|+|+++..+..    +|...+...  ++|+++|+||+|+...... .  .....+.+.++  .+++++||++
T Consensus        82 ~~~d~ii~V~D~t~~~~~~----~~~~~l~~~--~~pvilv~NK~Dl~~~~~i-~--~~~~~l~~~lg--~~vi~~SA~~  150 (258)
T 3a1s_A           82 GDADLVILVADSVNPEQSL----YLLLEILEM--EKKVILAMTAIDEAKKTGM-K--IDRYELQKHLG--IPVVFTSSVT  150 (258)
T ss_dssp             SCCSEEEEEEETTSCHHHH----HHHHHHHTT--TCCEEEEEECHHHHHHTTC-C--BCHHHHHHHHC--SCEEECCTTT
T ss_pred             cCCCEEEEEeCCCchhhHH----HHHHHHHhc--CCCEEEEEECcCCCCccch-H--HHHHHHHHHcC--CCEEEEEeeC
Confidence            5899999999999865433    366666665  8999999999998654433 2  22466777777  4799999999


Q ss_pred             CCChhHHHHHHHHHHh
Q 006490          161 MIQVPDVFYYAQKAVL  176 (643)
Q Consensus       161 ~~gi~~l~~~i~~~~~  176 (643)
                      |.|++++++.+.+.+.
T Consensus       151 g~gi~el~~~i~~~~~  166 (258)
T 3a1s_A          151 GEGLEELKEKIVEYAQ  166 (258)
T ss_dssp             CTTHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHhh
Confidence            9999999999998765

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.83  E-value=4.3e-20  Score=169.52  Aligned_cols=150  Identities=21%  Similarity=0.247  Sum_probs=105.5

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcc-------hhhhHHhhccC
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATESVP--EKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLEN-------KGKLNEELKRA   83 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~~~~~~~~a   83 (643)
                      .||+++|++|||||||+|+|++..+.  ...+++.... ....+...+..+.+|||||+..+       ...+..+++.+
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~   80 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDL-KEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDA   80 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-----------CC-EEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecc-eEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhC
Confidence            58999999999999999999998743  2233322111 22233345668999999998862       34455788999


Q ss_pred             CEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCC
Q 006490           84 DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQ  163 (643)
Q Consensus        84 d~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  163 (643)
                      |++++|+|+++..+...  ..+...++..  ++|+++|+||+|+....      +....+. +++ ..+++++||++|.|
T Consensus        81 ~~~i~v~d~~~~~~~~~--~~~~~~~~~~--~~p~ilv~nK~Dl~~~~------~~~~~~~-~~~-~~~~~~~Sa~~~~g  148 (161)
T 2dyk_A           81 EVVLFAVDGRAELTQAD--YEVAEYLRRK--GKPVILVATKVDDPKHE------LYLGPLY-GLG-FGDPIPTSSEHARG  148 (161)
T ss_dssp             SEEEEEEESSSCCCHHH--HHHHHHHHHH--TCCEEEEEECCCSGGGG------GGCGGGG-GGS-SCSCEECBTTTTBS
T ss_pred             CEEEEEEECCCcccHhH--HHHHHHHHhc--CCCEEEEEECcccccch------HhHHHHH-hCC-CCCeEEEecccCCC
Confidence            99999999988755443  2355555554  79999999999987531      2233343 444 23689999999999


Q ss_pred             hhHHHHHHHHHH
Q 006490          164 VPDVFYYAQKAV  175 (643)
Q Consensus       164 i~~l~~~i~~~~  175 (643)
                      ++++|+++.+.+
T Consensus       149 v~~l~~~l~~~l  160 (161)
T 2dyk_A          149 LEELLEAIWERL  160 (161)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             hHHHHHHHHHhC
Confidence            999999988764

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.83  E-value=3.6e-20  Score=190.50  Aligned_cols=157  Identities=21%  Similarity=0.240  Sum_probs=118.4

Q ss_pred             cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCC
Q 006490          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (643)
Q Consensus       420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad  499 (643)
                      .+..+||+|+|.+|||||||+++|++..+...+ ||....  ...++.  ....+.+|||+|++.+..+  +..+++.+|
T Consensus       162 ~~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-pT~~~~--~~~~~~--~~~~l~i~Dt~G~~~~~~~--~~~~~~~ad  234 (329)
T 3o47_A          162 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFN--VETVEY--KNISFTVWDVGGQDKIRPL--WRHYFQNTQ  234 (329)
T ss_dssp             -CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-EETTEE--EEEEEE--TTEEEEEEECC-----CCS--HHHHHTTEE
T ss_pred             ccCcceEEEECCCCccHHHHHHHHhCCCCCCcc-cccceE--EEEEec--CcEEEEEEECCCCHhHHHH--HHHHhccCC
Confidence            346789999999999999999999998865433 444433  333433  4567889999999988877  778899999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCC-------CcEEeee
Q 006490          500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE-------PPIPVSM  572 (643)
Q Consensus       500 ~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-------~~~~vSa  572 (643)
                      ++|+|||++++.+|+.+..++..+.......  ++|+++|+||+|+.....    .+++...++..       ++++|||
T Consensus       235 ~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~--~~piilV~NK~Dl~~~~~----~~~i~~~~~~~~~~~~~~~~~~vSA  308 (329)
T 3o47_A          235 GLIFVVDSNDRERVNEAREELMRMLAEDELR--DAVLLVFANKQDLPNAMN----AAEITDKLGLHSLRHRNWYIQATCA  308 (329)
T ss_dssp             EEEEEEETTCSSSHHHHHHHHHHHHTCGGGT--TCEEEEEEECTTSTTCCC----HHHHHHHHTCTTCCSSCEEEEECBT
T ss_pred             EEEEEEECCchHHHHHHHHHHHHHHhhhccC--CCeEEEEEECccCCcccC----HHHHHHHhchhhhhcCCCEEEEEEC
Confidence            9999999999999999988887776544322  789999999999986432    23344444432       3899999


Q ss_pred             ccC-CHHHHHHHHHHHHh
Q 006490          573 KSK-DLNNVFSRIIWAAE  589 (643)
Q Consensus       573 ~~g-~i~~l~~~l~~~~~  589 (643)
                      ++| |++++|+.|.+.+.
T Consensus       309 k~g~gi~el~~~l~~~l~  326 (329)
T 3o47_A          309 TSGDGLYEGLDWLSNQLR  326 (329)
T ss_dssp             TTTBTHHHHHHHHHHHHT
T ss_pred             CCCcCHHHHHHHHHHHHH
Confidence            999 99999999999875

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.83  E-value=8.5e-20  Score=184.92  Aligned_cols=158  Identities=22%  Similarity=0.170  Sum_probs=113.8

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCCC--CCCCCCCCeeeCCcccCCceeEEEEeCCCCCc--------chhhhHHh
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPE--KVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLE--------NKGKLNEE   79 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~--------~~~~~~~~   79 (643)
                      .+..+|+|+|+||||||||+|+|++..+..  ..++++.. .....+..++..+.+|||||+..        +......+
T Consensus         5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~-~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~   83 (301)
T 1wf3_A            5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRK-RLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEA   83 (301)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCS-CEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHH
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeE-EEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHH
Confidence            345679999999999999999999988643  23332221 12223445678999999999876        33455578


Q ss_pred             hccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcc
Q 006490           80 LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT  159 (643)
Q Consensus        80 ~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  159 (643)
                      ++.+|++|+|+|++++.+...  ..+.+.++...+++|+++|+||+|+.....     . +....+.+....+++++||+
T Consensus        84 l~~ad~il~VvD~~~~~~~~~--~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~-----~-~~~~~~~~~~~~~~~~iSA~  155 (301)
T 1wf3_A           84 LADVNAVVWVVDLRHPPTPED--ELVARALKPLVGKVPILLVGNKLDAAKYPE-----E-AMKAYHELLPEAEPRMLSAL  155 (301)
T ss_dssp             TSSCSEEEEEEETTSCCCHHH--HHHHHHHGGGTTTSCEEEEEECGGGCSSHH-----H-HHHHHHHTSTTSEEEECCTT
T ss_pred             HhcCCEEEEEEECCCCCChHH--HHHHHHHHhhcCCCCEEEEEECcccCCchH-----H-HHHHHHHhcCcCcEEEEeCC
Confidence            999999999999988765543  234566766555799999999999875321     0 12222332223468999999


Q ss_pred             cCCChhHHHHHHHHHHh
Q 006490          160 TMIQVPDVFYYAQKAVL  176 (643)
Q Consensus       160 ~~~gi~~l~~~i~~~~~  176 (643)
                      +|.|++++++.+.+.+.
T Consensus       156 ~g~gv~~l~~~l~~~l~  172 (301)
T 1wf3_A          156 DERQVAELKADLLALMP  172 (301)
T ss_dssp             CHHHHHHHHHHHHTTCC
T ss_pred             CCCCHHHHHHHHHHhcc
Confidence            99999999999987654

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.83  E-value=5.6e-20  Score=174.51  Aligned_cols=163  Identities=18%  Similarity=0.165  Sum_probs=111.0

Q ss_pred             CCCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCC----------Ccchhhh
Q 006490            7 SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSS----------LENKGKL   76 (643)
Q Consensus         7 ~~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~----------~~~~~~~   76 (643)
                      ......+||+|+|++|||||||+|+|++..+....+ +.+.+. .......+..+.+|||||.          +.+...+
T Consensus        18 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~t~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   95 (195)
T 3pqc_A           18 YPPPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSK-TPGKTR-SINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLV   95 (195)
T ss_dssp             CCCCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCS-SCCCCC-CEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHHHH
T ss_pred             CCCCCCeEEEEECCCCCCHHHHHHHHHcCccccccC-CCCCcc-CeEEEEECCcEEEEECCCCccccCChhhHHHHHHHH
Confidence            344567899999999999999999999987433222 222222 1112222446889999994          3344455


Q ss_pred             HHhhccC---CEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceE
Q 006490           77 NEELKRA---DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETC  153 (643)
Q Consensus        77 ~~~~~~a---d~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (643)
                      ..+++.+   |++++|+|+++..+....  .+..++...  ++|+++|+||+|+..........+....+...++. .++
T Consensus        96 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~--~~~~~~~~~--~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~  170 (195)
T 3pqc_A           96 EDYFKNRWSLQMVFLLVDGRIPPQDSDL--MMVEWMKSL--NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGE-YTI  170 (195)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHHT--TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCC-SCE
T ss_pred             HHHHhcCcCceEEEEEecCCCCCCHHHH--HHHHHHHHc--CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCC-Cce
Confidence            5666665   999999998877555443  255566655  79999999999997543221122333334433332 379


Q ss_pred             EEeCcccCCChhHHHHHHHHHHh
Q 006490          154 VECSATTMIQVPDVFYYAQKAVL  176 (643)
Q Consensus       154 ~~~Sa~~~~gi~~l~~~i~~~~~  176 (643)
                      ++|||++|.||+++|+++.+.+.
T Consensus       171 ~~~Sa~~~~gv~~l~~~l~~~l~  193 (195)
T 3pqc_A          171 IPTSSVTGEGISELLDLISTLLK  193 (195)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHC
T ss_pred             EEEecCCCCCHHHHHHHHHHHhh
Confidence            99999999999999999988764

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.83  E-value=3e-20  Score=175.46  Aligned_cols=159  Identities=17%  Similarity=0.173  Sum_probs=116.5

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcch------hhhHHhhc
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVP-EKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENK------GKLNEELK   81 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~------~~~~~~~~   81 (643)
                      .++.++|+|+|++|||||||+|+|++..+. ...+++. .......+..++..+.+|||||++.+.      .....++.
T Consensus         4 ~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t-~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   82 (188)
T 2wjg_A            4 HMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVT-VEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYII   82 (188)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSC-CEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCee-ccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHh
Confidence            346789999999999999999999987642 2244322 222333444557899999999998764      33445554


Q ss_pred             --cCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcc
Q 006490           82 --RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT  159 (643)
Q Consensus        82 --~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  159 (643)
                        .+|++++|+|.++   ++... .|...+...  +.|+++|+||+|+...... .  ...+.+.+.++  .+++++||+
T Consensus        83 ~~~~~~~i~v~d~~~---~~~~~-~~~~~~~~~--~~piilv~nK~Dl~~~~~~-~--~~~~~~~~~~~--~~~~~~Sa~  151 (188)
T 2wjg_A           83 NEKPDLVVNIVDATA---LERNL-YLTLQLMEM--GANLLLALNKMDLAKSLGI-E--IDVDKLEKILG--VKVVPLSAA  151 (188)
T ss_dssp             HHCCSEEEEEEEGGG---HHHHH-HHHHHHHTT--TCCEEEEEECHHHHHHTTC-C--CCHHHHHHHHT--SCEEECBGG
T ss_pred             ccCCCEEEEEecchh---HHHHH-HHHHHHHhc--CCCEEEEEEhhhccccccc-h--HHHHHHHHHhC--CCeEEEEec
Confidence              4999999999775   44444 477777664  8999999999998654332 1  33466667666  379999999


Q ss_pred             cCCChhHHHHHHHHHHhCCC
Q 006490          160 TMIQVPDVFYYAQKAVLHPT  179 (643)
Q Consensus       160 ~~~gi~~l~~~i~~~~~~~~  179 (643)
                      +|.|++++|+++.+.+....
T Consensus       152 ~~~~v~~l~~~i~~~~~~~~  171 (188)
T 2wjg_A          152 KKMGIEELKKAISIAVKDKK  171 (188)
T ss_dssp             GTBSHHHHHHHHHHHHTTC-
T ss_pred             CCCCHHHHHHHHHHHHHhcc
Confidence            99999999999999876544

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.83  E-value=2.6e-20  Score=181.17  Aligned_cols=166  Identities=12%  Similarity=0.031  Sum_probs=112.1

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCC---CCCCCCCCCCeeeCCccc-CCceeEEEEeCCCCCcc----------hh
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATESV---PEKVPPVHAPTRLPPDFY-PDRVPVTIIDTSSSLEN----------KG   74 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~----------~~   74 (643)
                      ....++|+|+|++|||||||+|+|++...   ....+++..... ...+. ..+..+.||||||+...          ..
T Consensus        26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~  104 (223)
T 4dhe_A           26 PTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHIN-YFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQ  104 (223)
T ss_dssp             CCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEE-EEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHH
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceE-EEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHH
Confidence            34568999999999999999999999872   333444322222 12222 45688999999996432          33


Q ss_pred             hhHHhhcc---CCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhh----
Q 006490           75 KLNEELKR---ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF----  147 (643)
Q Consensus        75 ~~~~~~~~---ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~----  147 (643)
                      ....+++.   +|++|+|+|+++..+...  ..|+..++..  ++|+++|+||+|+..........+.+......+    
T Consensus       105 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~l~~~--~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~  180 (223)
T 4dhe_A          105 LLSSYLQTRPQLCGMILMMDARRPLTELD--RRMIEWFAPT--GKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAG  180 (223)
T ss_dssp             HHHHHHHHCTTEEEEEEEEETTSCCCHHH--HHHHHHHGGG--CCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhcCcCcCEEEEEEeCCCCCCHHH--HHHHHHHHhc--CCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcc
Confidence            44455555   788999999987655333  3477777765  899999999999876432101111122222222    


Q ss_pred             -cccceEEEeCcccCCChhHHHHHHHHHHhCCC
Q 006490          148 -REIETCVECSATTMIQVPDVFYYAQKAVLHPT  179 (643)
Q Consensus       148 -~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~~~~  179 (643)
                       ....+++++||++|.||+++++++.+.+....
T Consensus       181 ~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~  213 (223)
T 4dhe_A          181 YAGKLTVQLFSALKRTGLDDAHALIESWLRPAA  213 (223)
T ss_dssp             CCSCEEEEEEBTTTTBSHHHHHHHHHHHHC---
T ss_pred             cCCCCeEEEeecCCCcCHHHHHHHHHHhcCccC
Confidence             22347999999999999999999998876543

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.82  E-value=1.2e-19  Score=184.86  Aligned_cols=158  Identities=16%  Similarity=0.184  Sum_probs=121.8

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCC---CCCcccceEEEEEEcCCCcEEEEEEecCCchhh-----hhhhccHH
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENY---APTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV-----KKILSNKE  493 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~---~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~-----~~~~~~~~  493 (643)
                      ..+||+++|++|||||||+|+|+++....+.   .+|.+..+  ..+... +...+.+||++|++.+     ..+  +..
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~--~~~~~~-~~~~l~i~Dt~G~~~~~~~~~~~~--~~~   76 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEH--SHLRFL-GNMTLNLWDCGGQDVFMENYFTKQ--KDH   76 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEE--EEEEET-TTEEEEEEEECCSHHHHHHHHTTT--HHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEE--EEEEeC-CceEEEEEECCCcHHHhhhhhhhH--HHH
Confidence            3589999999999999999999988544332   23444433  334445 4678889999999877     344  677


Q ss_pred             hhccCCEEEEEEeCCChhhHHHHHHHHHHH---HHhcCCCCCCCcEEEEEeCCCCCC--cc-----ccHHHHHHHHHHhC
Q 006490          494 ALASCDVTIFVYDSSDEYSWKRTKELLVEV---ARLGEDSGYGVPCLLIASKDDLKP--YT-----MAVQDSARVTQELG  563 (643)
Q Consensus       494 ~~~~ad~illv~D~s~~~s~~~~~~~~~~i---~~~~~~~~~~~pvilv~NK~Dl~~--~~-----~~~~~~~~~~~~~~  563 (643)
                      +++++|++++|||++++.+|+.+..|...+   ....+    ++|+++|+||+|+..  .+     ...+.+.++++.+|
T Consensus        77 ~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~----~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g  152 (307)
T 3r7w_A           77 IFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSP----DAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFG  152 (307)
T ss_dssp             HHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCT----TCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCC----CCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcC
Confidence            889999999999999999999887765444   43333    799999999999987  33     22477888899998


Q ss_pred             C--CCcEEeeeccCCHHHHHHHHHHHH
Q 006490          564 I--EPPIPVSMKSKDLNNVFSRIIWAA  588 (643)
Q Consensus       564 ~--~~~~~vSa~~g~i~~l~~~l~~~~  588 (643)
                      +  .++++|||+++|+.++|..+++.+
T Consensus       153 ~~~~~~~~tSa~~~~i~e~~~~iv~~l  179 (307)
T 3r7w_A          153 FPNLIGFPTSIWDESLYKAWSQIVCSL  179 (307)
T ss_dssp             CCSCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CCCeEEEEeeecCChHHHHHHHHHHHH
Confidence            5  469999999988888888887654

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.82  E-value=5.2e-20  Score=173.82  Aligned_cols=157  Identities=18%  Similarity=0.233  Sum_probs=121.5

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhh------hhhccHHhh
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK------KILSNKEAL  495 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~------~~~~~~~~~  495 (643)
                      ..++|+++|++|||||||+|+|++..+...+.|+++.+.....+...  ...+.+|||+|++.+.      .+  ...++
T Consensus         6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~--~~~~~   81 (188)
T 2wjg_A            6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYN--GEKFKVVDLPGVYSLTANSIDEII--ARDYI   81 (188)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEET--TEEEEEEECCCCSCCSSSSHHHHH--HHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeC--CcEEEEEECCCcCccccccHHHHH--HHHHH
Confidence            45899999999999999999999977654444655555555556554  3677889999987653      22  33444


Q ss_pred             c--cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeec
Q 006490          496 A--SCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMK  573 (643)
Q Consensus       496 ~--~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~  573 (643)
                      .  .+|++++|+|+++   ++....|+..+...      +.|+++|+||+|+..........+.+++.++++ ++++||+
T Consensus        82 ~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~~------~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~Sa~  151 (188)
T 2wjg_A           82 INEKPDLVVNIVDATA---LERNLYLTLQLMEM------GANLLLALNKMDLAKSLGIEIDVDKLEKILGVK-VVPLSAA  151 (188)
T ss_dssp             HHHCCSEEEEEEEGGG---HHHHHHHHHHHHTT------TCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSC-EEECBGG
T ss_pred             hccCCCEEEEEecchh---HHHHHHHHHHHHhc------CCCEEEEEEhhhccccccchHHHHHHHHHhCCC-eEEEEec
Confidence            3  5999999999976   55667777777653      799999999999876544445678888888986 9999999


Q ss_pred             cC-CHHHHHHHHHHHHhCCC
Q 006490          574 SK-DLNNVFSRIIWAAEHPH  592 (643)
Q Consensus       574 ~g-~i~~l~~~l~~~~~~~~  592 (643)
                      +| |++++|+++.+.+....
T Consensus       152 ~~~~v~~l~~~i~~~~~~~~  171 (188)
T 2wjg_A          152 KKMGIEELKKAISIAVKDKK  171 (188)
T ss_dssp             GTBSHHHHHHHHHHHHTTC-
T ss_pred             CCCCHHHHHHHHHHHHHhcc
Confidence            99 99999999999987544

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.82  E-value=7.8e-20  Score=167.75  Aligned_cols=150  Identities=23%  Similarity=0.283  Sum_probs=105.0

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCcEEEEEEecCCchhh-------hhhhccHHhh
Q 006490          424 FRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV-------KKILSNKEAL  495 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~-~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~-------~~~~~~~~~~  495 (643)
                      +||+++|++|||||||+|+|.+..+..... ++++.+.....+...+  ..+.+||++|.+..       ...  +..++
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~--~~~~~   77 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDR--GRFLLVDTGGLWSGDKWEKKIQEK--VDRAL   77 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETT--EEEEEEECGGGCSSSSCCHHHHHH--HHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCC--ceEEEEECCCCCCccchHHHHHHH--HHHHH
Confidence            589999999999999999999987653332 3443344455555553  46788999998762       222  45678


Q ss_pred             ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC
Q 006490          496 ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK  575 (643)
Q Consensus       496 ~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g  575 (643)
                      +.+|++++|+|++++.+... ..+...+...      +.|+++|+||+|+....   +...+++ .+++.+++++||++|
T Consensus        78 ~~~~~~i~v~d~~~~~~~~~-~~~~~~~~~~------~~p~ilv~nK~Dl~~~~---~~~~~~~-~~~~~~~~~~Sa~~~  146 (161)
T 2dyk_A           78 EDAEVVLFAVDGRAELTQAD-YEVAEYLRRK------GKPVILVATKVDDPKHE---LYLGPLY-GLGFGDPIPTSSEHA  146 (161)
T ss_dssp             TTCSEEEEEEESSSCCCHHH-HHHHHHHHHH------TCCEEEEEECCCSGGGG---GGCGGGG-GGSSCSCEECBTTTT
T ss_pred             HhCCEEEEEEECCCcccHhH-HHHHHHHHhc------CCCEEEEEECcccccch---HhHHHHH-hCCCCCeEEEecccC
Confidence            99999999999998755332 2222333332      79999999999997642   2334445 577756999999999


Q ss_pred             -CHHHHHHHHHHHH
Q 006490          576 -DLNNVFSRIIWAA  588 (643)
Q Consensus       576 -~i~~l~~~l~~~~  588 (643)
                       |++++|+++.+.+
T Consensus       147 ~gv~~l~~~l~~~l  160 (161)
T 2dyk_A          147 RGLEELLEAIWERL  160 (161)
T ss_dssp             BSHHHHHHHHHHHC
T ss_pred             CChHHHHHHHHHhC
Confidence             9999999998764

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.82  E-value=6.1e-20  Score=196.75  Aligned_cols=189  Identities=15%  Similarity=0.067  Sum_probs=114.6

Q ss_pred             cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCcEEEEEEecCCchhhhhh------hccH
Q 006490          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKI------LSNK  492 (643)
Q Consensus       420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~-~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~------~~~~  492 (643)
                      .+..++|+|+|.||||||||+|+|++.++..+.+ ++++.+.....+...|  ..+.+|||+|...+...      .++.
T Consensus       230 ~r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~  307 (476)
T 3gee_A          230 VSEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSR  307 (476)
T ss_dssp             HHHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------
T ss_pred             hcCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHH
Confidence            4467899999999999999999999987665544 4444444445555653  56888999998654432      2245


Q ss_pred             HhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeee
Q 006490          493 EALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSM  572 (643)
Q Consensus       493 ~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa  572 (643)
                      .+++.||++++|+|++++.+++....+...+... .    ++|+++|+||+|+......  ..+.+.+. ++.++++|||
T Consensus       308 ~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l-~----~~piIvV~NK~Dl~~~~~~--~~~~l~~~-~~~~~i~vSA  379 (476)
T 3gee_A          308 MKMAEADLILYLLDLGTERLDDELTEIRELKAAH-P----AAKFLTVANKLDRAANADA--LIRAIADG-TGTEVIGISA  379 (476)
T ss_dssp             CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC-T----TSEEEEEEECTTSCTTTHH--HHHHHHHH-HTSCEEECBT
T ss_pred             hhcccCCEEEEEEECCCCcchhhhHHHHHHHHhc-C----CCCEEEEEECcCCCCccch--hHHHHHhc-CCCceEEEEE
Confidence            6789999999999999988775433332222222 2    6899999999999875433  22344444 3356999999


Q ss_pred             ccC-CHHHHHHHHHHHHh-CCCCCCCCcccccchhhhhhhhchhhHHHHH
Q 006490          573 KSK-DLNNVFSRIIWAAE-HPHLNIPETETGRNRKRYRHLVNSSLVFVSV  620 (643)
Q Consensus       573 ~~g-~i~~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  620 (643)
                      ++| |+++++++|.+.+. .+... ++ .......|+.++++++..++..
T Consensus       380 ktg~GI~eL~~~i~~~~~~~~~~~-~~-~~~~~~~R~~~~l~~a~~~L~~  427 (476)
T 3gee_A          380 LNGDGIDTLKQHMGDLVKNLDKLH-EA-SVLVTSLRHYEALRNASDALQN  427 (476)
T ss_dssp             TTTBSHHHHHHHHTHHHHSSCCCC-TT-SCCCCSHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHhhccCCC-Cc-ccccccHHHHHHHHHHHHHHHH
Confidence            999 99999999999887 54422 22 2233556777777777765543

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.82  E-value=1.5e-19  Score=171.76  Aligned_cols=158  Identities=19%  Similarity=0.212  Sum_probs=107.8

Q ss_pred             cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCC----------chhhhhhh
Q 006490          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIP----------EEGVKKIL  489 (643)
Q Consensus       420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g----------~~~~~~~~  489 (643)
                      ....++|+|+|.+|||||||+|+|++..+...+.++.+..........+ .  .+.+||++|          ++.+..+ 
T Consensus        20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~-~--~~~l~Dt~G~~~~~~~~~~~~~~~~~-   95 (195)
T 1svi_A           20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIN-D--ELHFVDVPGYGFAKVSKSEREAWGRM-   95 (195)
T ss_dssp             CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEET-T--TEEEEECCCBCCCSSCHHHHHHHHHH-
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEEC-C--cEEEEECCCCCccccCHHHHHHHHHH-
Confidence            3457899999999999999999999987554444433332333333333 2  467899999          6666655 


Q ss_pred             ccHHhhccC---CEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCC--
Q 006490          490 SNKEALASC---DVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGI--  564 (643)
Q Consensus       490 ~~~~~~~~a---d~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~--  564 (643)
                       ...+++.+   |++++|+|++++.++.... +...+...      +.|+++|+||+|+..........+++.+.+..  
T Consensus        96 -~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~------~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~  167 (195)
T 1svi_A           96 -IETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKYY------GIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDP  167 (195)
T ss_dssp             -HHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHHT------TCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCT
T ss_pred             -HHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHHc------CCCEEEEEECcccCChHHHHHHHHHHHHHHcccC
Confidence             45566666   9999999999987766532 23333332      79999999999998765554444555554432  


Q ss_pred             -CCcEEeeeccC-CHHHHHHHHHHHHh
Q 006490          565 -EPPIPVSMKSK-DLNNVFSRIIWAAE  589 (643)
Q Consensus       565 -~~~~~vSa~~g-~i~~l~~~l~~~~~  589 (643)
                       .+++++||++| |+++++++|.+.+.
T Consensus       168 ~~~~~~~Sa~~~~gv~~l~~~l~~~l~  194 (195)
T 1svi_A          168 EDELILFSSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             TSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             CCceEEEEccCCCCHHHHHHHHHHHhc
Confidence             35899999999 99999999998764

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.82  E-value=2.9e-20  Score=184.05  Aligned_cols=150  Identities=14%  Similarity=0.170  Sum_probs=112.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchh----------hhHHhh-
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATESV-PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKG----------KLNEEL-   80 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----------~~~~~~-   80 (643)
                      .+|+|+|++|||||||+|+|++..+ +.+.|+++ .......+..++..+.+|||||+..+..          ....++ 
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~T-v~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~   80 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVT-VEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVI   80 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSS-SEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCce-EEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHh
Confidence            3799999999999999999999873 33455533 2233344555667899999999987653          334566 


Q ss_pred             -ccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcc
Q 006490           81 -KRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT  159 (643)
Q Consensus        81 -~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  159 (643)
                       +.+|++|+|+|+++..+..    ++..++...  ++|+++|+||+|+......   ......+.+.++  .+++++||+
T Consensus        81 ~~~~d~vi~VvDas~~~~~~----~l~~~l~~~--~~pvilv~NK~Dl~~~~~~---~~~~~~l~~~lg--~~vi~~SA~  149 (256)
T 3iby_A           81 DLEYDCIINVIDACHLERHL----YLTSQLFEL--GKPVVVALNMMDIAEHRGI---SIDTEKLESLLG--CSVIPIQAH  149 (256)
T ss_dssp             HSCCSEEEEEEEGGGHHHHH----HHHHHHTTS--CSCEEEEEECHHHHHHTTC---EECHHHHHHHHC--SCEEECBGG
T ss_pred             hCCCCEEEEEeeCCCchhHH----HHHHHHHHc--CCCEEEEEEChhcCCcCCc---HHHHHHHHHHcC--CCEEEEECC
Confidence             8999999999998854433    355556555  8999999999998654332   122455667776  479999999


Q ss_pred             cCCChhHHHHHHHHH
Q 006490          160 TMIQVPDVFYYAQKA  174 (643)
Q Consensus       160 ~~~gi~~l~~~i~~~  174 (643)
                      +|.|++++++.+.+.
T Consensus       150 ~g~gi~el~~~i~~~  164 (256)
T 3iby_A          150 KNIGIPALQQSLLHC  164 (256)
T ss_dssp             GTBSHHHHHHHHHTC
T ss_pred             CCCCHHHHHHHHHhh
Confidence            999999999999886

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.82  E-value=3e-20  Score=184.39  Aligned_cols=162  Identities=15%  Similarity=0.087  Sum_probs=111.3

Q ss_pred             CCCCccEEEEEcCC---------CCCHHHHHHHHhc---CCCCCCCCCCC-CCee--eCCc--------------ccCCc
Q 006490            8 SSRTGVRVVVVGDR---------GTGKSSLIAAAAT---ESVPEKVPPVH-APTR--LPPD--------------FYPDR   58 (643)
Q Consensus         8 ~~~~~~kI~lvG~~---------~vGKSsL~n~l~~---~~~~~~~~~~~-~~~~--~~~~--------------~~~~~   58 (643)
                      .....+||+|+|++         |||||||+|+|++   ..+...+.++. +...  ....              ++...
T Consensus        15 ~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~   94 (255)
T 3c5h_A           15 YFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE   94 (255)
T ss_dssp             SCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC--------
T ss_pred             CCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcE
Confidence            35567999999999         9999999999999   44544433321 1111  1111              23466


Q ss_pred             eeEEEEe-----------------------CCCCCcchhhhHHhhc---------------------cCCEEEEEEECCC
Q 006490           59 VPVTIID-----------------------TSSSLENKGKLNEELK---------------------RADAVVLTYACNQ   94 (643)
Q Consensus        59 ~~~~i~D-----------------------t~G~~~~~~~~~~~~~---------------------~ad~il~v~d~~~   94 (643)
                      +.+.|||                       ++|++.+...+..+++                     ++|++|+|||+++
T Consensus        95 ~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~  174 (255)
T 3c5h_A           95 CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSR  174 (255)
T ss_dssp             -CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC
T ss_pred             EEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCC
Confidence            8899999                       4555555555555555                     7999999999999


Q ss_pred             c--ccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHHHH
Q 006490           95 Q--STLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYY  170 (643)
Q Consensus        95 ~--~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  170 (643)
                      +  .+++.+. .|+..+...  ..++|++||+||+|+...+.+    +....++..... .++++|||++|.||+++|++
T Consensus       175 ~~~~s~~~~~-~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v----~~~~~~~~~~~~-~~~~e~SAk~g~gv~elf~~  248 (255)
T 3c5h_A          175 GMNRNFDDQL-KFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI----RDAHTFALSKKN-LQVVETSARSNVNVDLAFST  248 (255)
T ss_dssp             ----CHHHHH-HHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH----HHHHHHHHTSSS-CCEEECBTTTTBSHHHHHHH
T ss_pred             CchhhHHHHH-HHHHHHHHHhccCCCCEEEEEEcccccccHHH----HHHHHHHHhcCC-CeEEEEECCCCCCHHHHHHH
Confidence            8  9999988 588887653  358999999999998643221    334455544322 36999999999999999999


Q ss_pred             HHHHH
Q 006490          171 AQKAV  175 (643)
Q Consensus       171 i~~~~  175 (643)
                      +.+.+
T Consensus       249 l~~~l  253 (255)
T 3c5h_A          249 LVQLI  253 (255)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            98765

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.82  E-value=2.5e-20  Score=173.55  Aligned_cols=155  Identities=17%  Similarity=0.202  Sum_probs=111.1

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCcEEEEEEecCCchhhh----h--hhccHHh
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK----K--ILSNKEA  494 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~-~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~----~--~~~~~~~  494 (643)
                      ..+||+|+|++|||||||+|+|++..+..+.. ++++.++....+...|  ..+.+|||+|.+...    .  +.+...+
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   80 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQE   80 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECC--eEEEEEECCCcccchhHHHHHHHHHHHHH
Confidence            45799999999999999999999987654333 4444445555566653  347789999975421    1  2223457


Q ss_pred             hccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeecc
Q 006490          495 LASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKS  574 (643)
Q Consensus       495 ~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~  574 (643)
                      ++.+|++++|+|++++.+++ ...|+..+.+....   ++|+++|+||+|+......      +++..+. ++++|||++
T Consensus        81 ~~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~~---~~p~ilv~NK~Dl~~~~~~------~~~~~~~-~~~~~SA~~  149 (172)
T 2gj8_A           81 IEQADRVLFMVDGTTTDAVD-PAEIWPEFIARLPA---KLPITVVRNKADITGETLG------MSEVNGH-ALIRLSART  149 (172)
T ss_dssp             HHTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSCT---TCCEEEEEECHHHHCCCCE------EEEETTE-EEEECCTTT
T ss_pred             HHhCCEEEEEEECCCCCCHH-HHHHHHHHHHhccc---CCCEEEEEECccCCcchhh------hhhccCC-ceEEEeCCC
Confidence            89999999999999988866 45677776654322   6999999999998543211      0111233 489999999


Q ss_pred             C-CHHHHHHHHHHHHh
Q 006490          575 K-DLNNVFSRIIWAAE  589 (643)
Q Consensus       575 g-~i~~l~~~l~~~~~  589 (643)
                      | |++++|+.|.+.+.
T Consensus       150 g~gv~~l~~~l~~~~~  165 (172)
T 2gj8_A          150 GEGVDVLRNHLKQSMG  165 (172)
T ss_dssp             CTTHHHHHHHHHHHC-
T ss_pred             CCCHHHHHHHHHHHhh
Confidence            9 99999999998764

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.82  E-value=1.8e-19  Score=175.89  Aligned_cols=159  Identities=13%  Similarity=0.054  Sum_probs=112.6

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCc------hh----hhhhhc
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE------EG----VKKILS  490 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~------~~----~~~~~~  490 (643)
                      ...++|+|+|.+|||||||+|+|++..+.....+.++.......+...  ...+.+|||+|.      +.    +..   
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~---  101 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHK--LNKYQIIDTPGLLDRAFENRNTIEMTT---  101 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEET--TEEEEEEECTTTTTSCGGGCCHHHHHH---
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecC--CCeEEEEECCCCcCcccchhhhHHHHH---
Confidence            456899999999999999999999988763333333333444444433  367788999998      32    212   


Q ss_pred             cHHhhccCCEEEEEEeCCChhhHH--HHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc----HHHHHHHHHHhC-
Q 006490          491 NKEALASCDVTIFVYDSSDEYSWK--RTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA----VQDSARVTQELG-  563 (643)
Q Consensus       491 ~~~~~~~ad~illv~D~s~~~s~~--~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~----~~~~~~~~~~~~-  563 (643)
                      ....+..+|++++|+|++++.+|.  ....|+..+.....    +.|+++|+||+|+...+..    .+..+.++...+ 
T Consensus       102 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  177 (228)
T 2qu8_A          102 ITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFS----NKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKN  177 (228)
T ss_dssp             HHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-----CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCS
T ss_pred             HHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhc----CCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCC
Confidence            233468899999999999987764  23456666654322    7899999999999865443    224566666666 


Q ss_pred             -CCCcEEeeeccC-CHHHHHHHHHHHHh
Q 006490          564 -IEPPIPVSMKSK-DLNNVFSRIIWAAE  589 (643)
Q Consensus       564 -~~~~~~vSa~~g-~i~~l~~~l~~~~~  589 (643)
                       +. +++|||++| |++++|++|.+.+.
T Consensus       178 ~~~-~~~~SA~~g~gi~~l~~~l~~~i~  204 (228)
T 2qu8_A          178 PIK-FSSFSTLTGVGVEQAKITACELLK  204 (228)
T ss_dssp             CEE-EEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             Cce-EEEEecccCCCHHHHHHHHHHHHH
Confidence             44 999999999 99999999999875

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.82  E-value=1.6e-19  Score=182.90  Aligned_cols=153  Identities=22%  Similarity=0.267  Sum_probs=109.9

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-C-CcccceEEEEEEcCCCcEEEEEEecCCchh--------hhhhhccH
Q 006490          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYA-P-TTGEQYAVNVVDQPGGNKKTLILQEIPEEG--------VKKILSNK  492 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~-~-t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~--------~~~~~~~~  492 (643)
                      ..+|+|+|+||||||||+|+|++.++..++. | ||+... ...+..  ....+.+|||+|...        +...  ..
T Consensus         7 ~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i-~~i~~~--~~~~l~l~DTpG~~~~~~~l~~~~~~~--~~   81 (301)
T 1wf3_A            7 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRL-RGILTE--GRRQIVFVDTPGLHKPMDALGEFMDQE--VY   81 (301)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCE-EEEEEE--TTEEEEEEECCCCCCCCSHHHHHHHHH--HH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEE-EEEEEe--CCcEEEEecCccccchhhHHHHHHHHH--HH
Confidence            3579999999999999999999999876654 4 444322 222322  456788999999754        2222  56


Q ss_pred             HhhccCCEEEEEEeCCChhhHHHHHHHH-HHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHH-hCCCCcEEe
Q 006490          493 EALASCDVTIFVYDSSDEYSWKRTKELL-VEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQE-LGIEPPIPV  570 (643)
Q Consensus       493 ~~~~~ad~illv~D~s~~~s~~~~~~~~-~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~v  570 (643)
                      .+++.+|++++|+|++++.+..  ..|+ ..+.....    +.|+++|+||+|+......   ..+..+. .++.+++++
T Consensus        82 ~~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~~----~~p~ilV~NK~Dl~~~~~~---~~~~~~~~~~~~~~~~i  152 (301)
T 1wf3_A           82 EALADVNAVVWVVDLRHPPTPE--DELVARALKPLVG----KVPILLVGNKLDAAKYPEE---AMKAYHELLPEAEPRML  152 (301)
T ss_dssp             HHTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGTT----TSCEEEEEECGGGCSSHHH---HHHHHHHTSTTSEEEEC
T ss_pred             HHHhcCCEEEEEEECCCCCChH--HHHHHHHHHhhcC----CCCEEEEEECcccCCchHH---HHHHHHHhcCcCcEEEE
Confidence            7889999999999999875543  3343 44444321    6899999999999864330   2233333 344468999


Q ss_pred             eeccC-CHHHHHHHHHHHHh
Q 006490          571 SMKSK-DLNNVFSRIIWAAE  589 (643)
Q Consensus       571 Sa~~g-~i~~l~~~l~~~~~  589 (643)
                      ||++| |++++++.|.+.+.
T Consensus       153 SA~~g~gv~~l~~~l~~~l~  172 (301)
T 1wf3_A          153 SALDERQVAELKADLLALMP  172 (301)
T ss_dssp             CTTCHHHHHHHHHHHHTTCC
T ss_pred             eCCCCCCHHHHHHHHHHhcc
Confidence            99999 99999999998764

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.81  E-value=1e-19  Score=180.48  Aligned_cols=157  Identities=18%  Similarity=0.165  Sum_probs=118.9

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhh----ccHHhh--
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKIL----SNKEAL--  495 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~----~~~~~~--  495 (643)
                      +.++|+++|.+|||||||+|+|++..+.....|+++.......+...  ...+.+||++|...+....    -...++  
T Consensus         4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~   81 (258)
T 3a1s_A            4 HMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYK--GYTINLIDLPGTYSLGYSSIDEKIARDYLLK   81 (258)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEET--TEEEEEEECCCCSSCCSSSHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEEC--CeEEEEEECCCcCccCCCCHHHHHHHHHHhh
Confidence            46899999999999999999999987654444544444444444443  4678899999987654310    023444  


Q ss_pred             ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC
Q 006490          496 ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK  575 (643)
Q Consensus       496 ~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g  575 (643)
                      ..+|++++|+|+++..+   ...|...+...      ++|+++|+||+|+...+......+.+++.++++ ++++||++|
T Consensus        82 ~~~d~ii~V~D~t~~~~---~~~~~~~l~~~------~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg~~-vi~~SA~~g  151 (258)
T 3a1s_A           82 GDADLVILVADSVNPEQ---SLYLLLEILEM------EKKVILAMTAIDEAKKTGMKIDRYELQKHLGIP-VVFTSSVTG  151 (258)
T ss_dssp             SCCSEEEEEEETTSCHH---HHHHHHHHHTT------TCCEEEEEECHHHHHHTTCCBCHHHHHHHHCSC-EEECCTTTC
T ss_pred             cCCCEEEEEeCCCchhh---HHHHHHHHHhc------CCCEEEEEECcCCCCccchHHHHHHHHHHcCCC-EEEEEeeCC
Confidence            58999999999998654   33466666554      799999999999976544444578899999986 999999999


Q ss_pred             -CHHHHHHHHHHHHhC
Q 006490          576 -DLNNVFSRIIWAAEH  590 (643)
Q Consensus       576 -~i~~l~~~l~~~~~~  590 (643)
                       |++++|+.+.+.+..
T Consensus       152 ~gi~el~~~i~~~~~~  167 (258)
T 3a1s_A          152 EGLEELKEKIVEYAQK  167 (258)
T ss_dssp             TTHHHHHHHHHHHHHS
T ss_pred             cCHHHHHHHHHHHhhc
Confidence             999999999998763

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.81  E-value=3.5e-20  Score=183.44  Aligned_cols=150  Identities=17%  Similarity=0.168  Sum_probs=115.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhh----------hhccHH
Q 006490          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK----------ILSNKE  493 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~----------~~~~~~  493 (643)
                      .+|+++|.+|||||||+|+|++........|+++.+.....+...+  ..+.+||++|...+..          +  +..
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~e~i--~~~   77 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGE--HLIEITDLPGVYSLVANAEGISQDEQI--AAQ   77 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETT--EEEEEEECCCCSSCC------CHHHHH--HHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECC--eEEEEEeCCCcccccccccCCCHHHHH--HHH
Confidence            3799999999999999999999875444446655555566666553  4778899999865542          3  344


Q ss_pred             hh--ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEee
Q 006490          494 AL--ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVS  571 (643)
Q Consensus       494 ~~--~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vS  571 (643)
                      ++  ..+|++++|+|+++..++..   +...+...      ++|+++|+||+|+...+........+.+.++++ ++++|
T Consensus        78 ~~~~~~~d~vi~VvDas~~~~~~~---l~~~l~~~------~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg~~-vi~~S  147 (256)
T 3iby_A           78 SVIDLEYDCIINVIDACHLERHLY---LTSQLFEL------GKPVVVALNMMDIAEHRGISIDTEKLESLLGCS-VIPIQ  147 (256)
T ss_dssp             HHHHSCCSEEEEEEEGGGHHHHHH---HHHHHTTS------CSCEEEEEECHHHHHHTTCEECHHHHHHHHCSC-EEECB
T ss_pred             HHhhCCCCEEEEEeeCCCchhHHH---HHHHHHHc------CCCEEEEEEChhcCCcCCcHHHHHHHHHHcCCC-EEEEE
Confidence            55  89999999999998655443   33333333      799999999999976554545567788899986 99999


Q ss_pred             eccC-CHHHHHHHHHHH
Q 006490          572 MKSK-DLNNVFSRIIWA  587 (643)
Q Consensus       572 a~~g-~i~~l~~~l~~~  587 (643)
                      |++| |++++++.+.+.
T Consensus       148 A~~g~gi~el~~~i~~~  164 (256)
T 3iby_A          148 AHKNIGIPALQQSLLHC  164 (256)
T ss_dssp             GGGTBSHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHHHhh
Confidence            9999 999999999987

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.81  E-value=2.8e-19  Score=170.57  Aligned_cols=160  Identities=20%  Similarity=0.256  Sum_probs=123.6

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (643)
Q Consensus        12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v   89 (643)
                      .+||+|+|++|||||||+++|++..+.....++.+...  ....+++..+.+.+|||+|.+.+......+++.+|++++|
T Consensus         5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v   84 (199)
T 2f9l_A            5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLV   84 (199)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEE
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEE
Confidence            58999999999999999999999887655444333322  2233445567889999999988888888899999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHH
Q 006490           90 YACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (643)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  168 (643)
                      +|+++..+++.+. .|...+... ..+.|+++|+||+|+...... .. +....++...+  ..++++||+++.|+++++
T Consensus        85 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~-~~-~~a~~l~~~~~--~~~~d~Sal~~~~i~~l~  159 (199)
T 2f9l_A           85 YDIAKHLTYENVE-RWLKELRDHADSNIVIMLVGNKSDLRHLRAV-PT-DEARAFAEKNN--LSFIETSALDSTNVEEAF  159 (199)
T ss_dssp             EETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCGGGCCS-CH-HHHHHHHHHTT--CEEEECCTTTCTTHHHHH
T ss_pred             EECcCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEECcccccccCc-CH-HHHHHHHHHcC--CeEEEEeCCCCCCHHHHH
Confidence            9999999988876 488777654 347899999999999764443 22 33455666654  368999999999999999


Q ss_pred             HHHHHHHh
Q 006490          169 YYAQKAVL  176 (643)
Q Consensus       169 ~~i~~~~~  176 (643)
                      +.+.+.+.
T Consensus       160 ~~l~~~~~  167 (199)
T 2f9l_A          160 KNILTEIY  167 (199)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988764

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.81  E-value=7.2e-20  Score=173.03  Aligned_cols=154  Identities=14%  Similarity=0.122  Sum_probs=109.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCC-----------chhhhhhhccH
Q 006490          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIP-----------EEGVKKILSNK  492 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g-----------~~~~~~~~~~~  492 (643)
                      +||+|+|.+|||||||+|+|++..+...+.|+++.....  +...    .+.+||++|           ++.+..+  ..
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~--~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~--~~   73 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIE--IEWK----NHKIIDMPGFGFMMGLPKEVQERIKDE--IV   73 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEE--EEET----TEEEEECCCBSCCTTSCHHHHHHHHHH--HH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEE--EecC----CEEEEECCCccccccCCHHHHHHHHHH--HH
Confidence            589999999999999999999998776666654433322  2222    466799999           5555554  45


Q ss_pred             Hhhcc-CCEEEEEEeCCChhhHHHH-HHHHHH--------HHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHh
Q 006490          493 EALAS-CDVTIFVYDSSDEYSWKRT-KELLVE--------VARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQEL  562 (643)
Q Consensus       493 ~~~~~-ad~illv~D~s~~~s~~~~-~~~~~~--------i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~  562 (643)
                      .+++. ++++++|+|+.+..++..+ ..|...        +.......  +.|+++|+||+|+....  .+..+++++.+
T Consensus        74 ~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~--~~~~~~~~~~~  149 (190)
T 2cxx_A           74 HFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLREL--DIPTIVAVNKLDKIKNV--QEVINFLAEKF  149 (190)
T ss_dssp             HHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHT--TCCEEEEEECGGGCSCH--HHHHHHHHHHH
T ss_pred             HHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhc--CCceEEEeehHhccCcH--HHHHHHHHHHh
Confidence            55555 6655555555556666665 445432        21111111  79999999999998754  56778889999


Q ss_pred             CCC------CcEEeeeccC-CHHHHHHHHHHHHh
Q 006490          563 GIE------PPIPVSMKSK-DLNNVFSRIIWAAE  589 (643)
Q Consensus       563 ~~~------~~~~vSa~~g-~i~~l~~~l~~~~~  589 (643)
                      +.+      ++++|||++| |++++|++|.+.+.
T Consensus       150 ~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~  183 (190)
T 2cxx_A          150 EVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIR  183 (190)
T ss_dssp             TCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             hhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcc
Confidence            875      2599999999 99999999999875

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.81  E-value=7.1e-20  Score=173.08  Aligned_cols=156  Identities=17%  Similarity=0.179  Sum_probs=108.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCC-----------CcchhhhHHhhc
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSS-----------LENKGKLNEELK   81 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~-----------~~~~~~~~~~~~   81 (643)
                      +||+|+|++|||||||+|+|++..+.....+..+....  .+...  .+.+|||||.           +.+...+..+++
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~--~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~   77 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKII--EIEWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIE   77 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCE--EEEET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeE--EEecC--CEEEEECCCccccccCCHHHHHHHHHHHHHHHH
Confidence            68999999999999999999998865442221111111  11111  6899999994           344455556677


Q ss_pred             c-CCEEEEEEECCCcccHHHHHHHHHHH---------HHh-cCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhccc
Q 006490           82 R-ADAVVLTYACNQQSTLSRLSSYWLPE---------LRR-LEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREI  150 (643)
Q Consensus        82 ~-ad~il~v~d~~~~~s~~~~~~~~~~~---------l~~-~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~  150 (643)
                      . ++++++|+++.+..++..+...|...         +.. ...++|+++|+||+|+....     .+..+.+++.++..
T Consensus        78 ~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-----~~~~~~~~~~~~~~  152 (190)
T 2cxx_A           78 DNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV-----QEVINFLAEKFEVP  152 (190)
T ss_dssp             HHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH-----HHHHHHHHHHHTCC
T ss_pred             hhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH-----HHHHHHHHHHhhhh
Confidence            6 77777777777777777764456542         111 12489999999999997642     34456666666531


Q ss_pred             -----ceEEEeCcccCCChhHHHHHHHHHHhC
Q 006490          151 -----ETCVECSATTMIQVPDVFYYAQKAVLH  177 (643)
Q Consensus       151 -----~~~~~~Sa~~~~gi~~l~~~i~~~~~~  177 (643)
                           .++++|||++|.|++++|+++.+.+..
T Consensus       153 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~  184 (190)
T 2cxx_A          153 LSEIDKVFIPISAKFGDNIERLKNRIFEVIRE  184 (190)
T ss_dssp             GGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             hhccCCcEEEEecCCCCCHHHHHHHHHHhcch
Confidence                 147999999999999999999987653

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.81  E-value=1.1e-19  Score=181.21  Aligned_cols=152  Identities=16%  Similarity=0.171  Sum_probs=113.2

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhh------hhhccHHhhc
Q 006490          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK------KILSNKEALA  496 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~------~~~~~~~~~~  496 (643)
                      .++|+++|+||||||||+|+|++........|+++.......  +.+ ...+.+||++|++.+.      .+  +..++.
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~--~~~-~~~l~l~DtpG~~~~~~~~~~e~v--~~~~~~   77 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGL--VKK-NKDLEIQDLPGIYSMSPYSPEAKV--ARDYLL   77 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEE--CTT-CTTEEEEECCCCSCSSCSSHHHHH--HHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEE--Eec-CCeEEEEECCCcCccCCCChHHHH--HHHHHh
Confidence            579999999999999999999997643333343333222222  332 3467789999987664      23  344554


Q ss_pred             --cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeecc
Q 006490          497 --SCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKS  574 (643)
Q Consensus       497 --~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~  574 (643)
                        .+|++++|+|+++..+   ...|...+.+.      ++|+++|+||+|+............+++.++++ +++|||++
T Consensus        78 ~~~~d~vi~V~D~t~~e~---~~~~~~~l~~~------~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~-vi~~SA~~  147 (272)
T 3b1v_A           78 SQRADSILNVVDATNLER---NLYLTTQLIET------GIPVTIALNMIDVLDGQGKKINVDKLSYHLGVP-VVATSALK  147 (272)
T ss_dssp             TTCCSEEEEEEEGGGHHH---HHHHHHHHHHT------CSCEEEEEECHHHHHHTTCCCCHHHHHHHHTSC-EEECBTTT
T ss_pred             cCCCCEEEEEecCCchHh---HHHHHHHHHhc------CCCEEEEEEChhhCCcCCcHHHHHHHHHHcCCC-EEEEEccC
Confidence              6999999999998644   34566666553      899999999999876444445677888999986 99999999


Q ss_pred             C-CHHHHHHHHHHHHh
Q 006490          575 K-DLNNVFSRIIWAAE  589 (643)
Q Consensus       575 g-~i~~l~~~l~~~~~  589 (643)
                      | |++++|+.+.+.+.
T Consensus       148 g~gi~el~~~i~~~~~  163 (272)
T 3b1v_A          148 QTGVDQVVKKAAHTTT  163 (272)
T ss_dssp             TBSHHHHHHHHHHSCT
T ss_pred             CCCHHHHHHHHHHHHh
Confidence            9 99999999998764

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.80  E-value=5.3e-19  Score=167.54  Aligned_cols=160  Identities=20%  Similarity=0.243  Sum_probs=124.0

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEE
Q 006490           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (643)
Q Consensus        11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (643)
                      ..++|+|+|++|||||||+++|++..+.....++.+...  ....+++..+.+.+|||+|++.+...+..+++.++++++
T Consensus        28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~  107 (191)
T 1oix_A           28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALL  107 (191)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEE
T ss_pred             cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEE
Confidence            458999999999999999999999887655444333322  223344445677889999999888888899999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHH
Q 006490           89 TYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV  167 (643)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  167 (643)
                      |+|+++..+++.+. .|...++.. ..+.|+++|+||+|+...... . .+....++.+.+  ..++++||+++.|++++
T Consensus       108 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~-~-~~~a~~l~~~~~--~~~ld~Sald~~~v~~l  182 (191)
T 1oix_A          108 VYDIAKHLTYENVE-RWLKELRDHADSNIVIMLVGNKSDLRHLRAV-P-TDEARAFAEKNG--LSFIETSALDSTNVEAA  182 (191)
T ss_dssp             EEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECGGGGGGCCS-C-HHHHHHHHHHTT--CEEEECCTTTCTTHHHH
T ss_pred             EEECcCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECccccccccc-C-HHHHHHHHHHcC--CEEEEEeCCCCCCHHHH
Confidence            99999998888876 487777653 347899999999998754333 2 233456666554  26899999999999999


Q ss_pred             HHHHHHHH
Q 006490          168 FYYAQKAV  175 (643)
Q Consensus       168 ~~~i~~~~  175 (643)
                      ++.+.+.+
T Consensus       183 ~~~l~~~i  190 (191)
T 1oix_A          183 FQTILTEI  190 (191)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99988764

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.80  E-value=1.1e-19  Score=182.17  Aligned_cols=155  Identities=15%  Similarity=0.139  Sum_probs=113.9

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchh----------hhHHh
Q 006490           11 TGVRVVVVGDRGTGKSSLIAAAATESV-PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKG----------KLNEE   79 (643)
Q Consensus        11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----------~~~~~   79 (643)
                      +.++|+|+|++|||||||+|+|++..+ +.+.++++ .......+...+..+.+|||||+..+..          ....+
T Consensus         2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t-~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~   80 (274)
T 3i8s_A            2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVT-VERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (274)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSS-SEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCee-EEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHH
Confidence            468999999999999999999999874 23355532 2233344555667899999999887552          12222


Q ss_pred             --hccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeC
Q 006490           80 --LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECS  157 (643)
Q Consensus        80 --~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  157 (643)
                        .+.+|++|+|+|+++.....    +|...+.+.  ++|+++|+||+|+......   ......+.+.++  .+++++|
T Consensus        81 ~~~~~~d~ii~VvD~~~~~~~~----~~~~~l~~~--~~p~ivv~NK~Dl~~~~~~---~~~~~~l~~~lg--~~~i~~S  149 (274)
T 3i8s_A           81 ILSGDADLLINVVDASNLERNL----YLTLQLLEL--GIPCIVALNMLDIAEKQNI---RIEIDALSARLG--CPVIPLV  149 (274)
T ss_dssp             HHHTCCSEEEEEEEGGGHHHHH----HHHHHHHHH--TCCEEEEEECHHHHHHTTE---EECHHHHHHHHT--SCEEECC
T ss_pred             HhhcCCCEEEEEecCCChHHHH----HHHHHHHhc--CCCEEEEEECccchhhhhH---HHHHHHHHHhcC--CCEEEEE
Confidence              37999999999988754332    356666666  8999999999998654332   123456667776  4799999


Q ss_pred             cccCCChhHHHHHHHHHHhC
Q 006490          158 ATTMIQVPDVFYYAQKAVLH  177 (643)
Q Consensus       158 a~~~~gi~~l~~~i~~~~~~  177 (643)
                      |++|.|++++++.+.+.+..
T Consensus       150 A~~g~gi~el~~~i~~~~~~  169 (274)
T 3i8s_A          150 STRGRGIEALKLAIDRYKAN  169 (274)
T ss_dssp             CGGGHHHHHHHHHHHTCCCC
T ss_pred             cCCCCCHHHHHHHHHHHHhc
Confidence            99999999999998876543

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.80  E-value=8.5e-20  Score=182.89  Aligned_cols=156  Identities=15%  Similarity=0.148  Sum_probs=117.9

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhh----------hhccH
Q 006490          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK----------ILSNK  492 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~----------~~~~~  492 (643)
                      .++|+++|.+|||||||+|+|++..+.....|+++.+.....+...+  ..+.+||++|...+..          +.+..
T Consensus         3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~   80 (274)
T 3i8s_A            3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (274)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHHH
Confidence            47999999999999999999999875444446655556666666653  4567799999766542          21111


Q ss_pred             HhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeee
Q 006490          493 EALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSM  572 (643)
Q Consensus       493 ~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa  572 (643)
                      .....+|++++|+|+++..+.   ..+...+.+.      ++|+++|+||+|+..........+.+++.++++ ++++||
T Consensus        81 ~~~~~~d~ii~VvD~~~~~~~---~~~~~~l~~~------~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg~~-~i~~SA  150 (274)
T 3i8s_A           81 ILSGDADLLINVVDASNLERN---LYLTLQLLEL------GIPCIVALNMLDIAEKQNIRIEIDALSARLGCP-VIPLVS  150 (274)
T ss_dssp             HHHTCCSEEEEEEEGGGHHHH---HHHHHHHHHH------TCCEEEEEECHHHHHHTTEEECHHHHHHHHTSC-EEECCC
T ss_pred             HhhcCCCEEEEEecCCChHHH---HHHHHHHHhc------CCCEEEEEECccchhhhhHHHHHHHHHHhcCCC-EEEEEc
Confidence            223799999999999986543   3444445444      799999999999876554445567888999986 999999


Q ss_pred             ccC-CHHHHHHHHHHHHhC
Q 006490          573 KSK-DLNNVFSRIIWAAEH  590 (643)
Q Consensus       573 ~~g-~i~~l~~~l~~~~~~  590 (643)
                      ++| |++++++.+.+.+..
T Consensus       151 ~~g~gi~el~~~i~~~~~~  169 (274)
T 3i8s_A          151 TRGRGIEALKLAIDRYKAN  169 (274)
T ss_dssp             GGGHHHHHHHHHHHTCCCC
T ss_pred             CCCCCHHHHHHHHHHHHhc
Confidence            999 999999999887653

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.80  E-value=7.1e-20  Score=184.08  Aligned_cols=156  Identities=13%  Similarity=0.144  Sum_probs=107.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCC---CCCCCCCeeeCCcccCCceeEEEEeCCCCCcchh---hhHHhhccCCEEE
Q 006490           14 RVVVVGDRGTGKSSLIAAAATESVPEK---VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKG---KLNEELKRADAVV   87 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~---~~~~~~~~ad~il   87 (643)
                      ||+++|+.|||||||++++.++.+...   ..++.+....  .+ ...+++.||||+|++++..   ....++++++++|
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~--~v-~~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~I   77 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLE--HF-STLIDLAVMELPGQLNYFEPSYDSERLFKSVGALV   77 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCE--EE-CSSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeE--EE-ccEEEEEEEECCCchhccchhhhhhhhccCCCEEE
Confidence            699999999999999999886643221   1222222111  12 2458899999999999864   4688999999999


Q ss_pred             EEEECCCcccHHHHHHHH---HHHHHhcCCCCcEEEEEecccCCCCCc------cchhhhhhhHHHHhh--cccceEEEe
Q 006490           88 LTYACNQQSTLSRLSSYW---LPELRRLEIKVPIIVAGCKLDLRGDHN------ATSLEEVMGPIMQQF--REIETCVEC  156 (643)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~---~~~l~~~~~~~pvilv~NK~D~~~~~~------~~~~~~~~~~~~~~~--~~~~~~~~~  156 (643)
                      +|||++++ ..+... .|   +..++...+++|+++||||+|+..+..      . ...+..+++++..  +.-.+++++
T Consensus        78 lV~Ditd~-~~~~~~-~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~-V~~~~~~~la~~~~~~~~i~f~eT  154 (331)
T 3r7w_B           78 YVIDSQDE-YINAIT-NLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRD-IMQRTGEELLELGLDGVQVSFYLT  154 (331)
T ss_dssp             EECCCSSC-TTHHHH-HHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHH-HHHHHHHTTSSSSCSCCCEEEECC
T ss_pred             EEEECCch-HHHHHH-HHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHH-hhHHHHHHHHhhcccccCceEEEe
Confidence            99999998 333222 34   444455567899999999999976421      1 1222233444421  011369999


Q ss_pred             CcccCCChhHHHHHHHHHHh
Q 006490          157 SATTMIQVPDVFYYAQKAVL  176 (643)
Q Consensus       157 Sa~~~~gi~~l~~~i~~~~~  176 (643)
                      ||++ .||.+.|..+.+.+.
T Consensus       155 SAkd-~nV~eAFs~iv~~li  173 (331)
T 3r7w_B          155 SIFD-HSIYEAFSRIVQKLI  173 (331)
T ss_dssp             CSSS-SHHHHHHHHHHTTSS
T ss_pred             ccCC-CcHHHHHHHHHHHHH
Confidence            9997 589999998887655

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.80  E-value=1.1e-18  Score=165.45  Aligned_cols=157  Identities=16%  Similarity=0.157  Sum_probs=108.3

Q ss_pred             cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCC----------chhhhhhh
Q 006490          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIP----------EEGVKKIL  489 (643)
Q Consensus       420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g----------~~~~~~~~  489 (643)
                      ....+||+|+|.+|||||||+|+|++....... ++.+........... .  .+.+||++|          ++.+..+ 
T Consensus        20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~t~~~~~~~~~-~--~~~i~Dt~G~~~~~~~~~~~~~~~~~-   94 (195)
T 3pqc_A           20 PPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVS-KTPGKTRSINFYLVN-S--KYYFVDLPGYGYAKVSKKERMLWKRL-   94 (195)
T ss_dssp             CCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCC-SSCCCCCCEEEEEET-T--TEEEEECCCBSSSCCCHHHHHHHHHH-
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHcCcccccc-CCCCCccCeEEEEEC-C--cEEEEECCCCccccCChhhHHHHHHH-
Confidence            345689999999999999999999998854433 333322223333333 2  356899999          5555555 


Q ss_pred             ccHHhhccC---CEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc---HHHHHHHHHHhC
Q 006490          490 SNKEALASC---DVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA---VQDSARVTQELG  563 (643)
Q Consensus       490 ~~~~~~~~a---d~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~---~~~~~~~~~~~~  563 (643)
                       ...+++.+   |++++|+|++++.+... ..+...+...      +.|+++|+||+|+......   .+....++...+
T Consensus        95 -~~~~~~~~~~~~~vi~v~d~~~~~~~~~-~~~~~~~~~~------~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~  166 (195)
T 3pqc_A           95 -VEDYFKNRWSLQMVFLLVDGRIPPQDSD-LMMVEWMKSL------NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYG  166 (195)
T ss_dssp             -HHHHHHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHHHT------TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSC
T ss_pred             -HHHHHhcCcCceEEEEEecCCCCCCHHH-HHHHHHHHHc------CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcC
Confidence             44455554   99999999988644332 2223333333      7899999999999764433   334455555545


Q ss_pred             CCCcEEeeeccC-CHHHHHHHHHHHHh
Q 006490          564 IEPPIPVSMKSK-DLNNVFSRIIWAAE  589 (643)
Q Consensus       564 ~~~~~~vSa~~g-~i~~l~~~l~~~~~  589 (643)
                      ..+++++||++| |++++|++|.+.+.
T Consensus       167 ~~~~~~~Sa~~~~gv~~l~~~l~~~l~  193 (195)
T 3pqc_A          167 EYTIIPTSSVTGEGISELLDLISTLLK  193 (195)
T ss_dssp             CSCEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHhh
Confidence            446999999999 99999999998774

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.80  E-value=3.4e-19  Score=178.57  Aligned_cols=157  Identities=15%  Similarity=0.078  Sum_probs=114.6

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchh------hhHHhh--c
Q 006490           11 TGVRVVVVGDRGTGKSSLIAAAATESVP-EKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKG------KLNEEL--K   81 (643)
Q Consensus        11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~------~~~~~~--~   81 (643)
                      +.++|+|+|++|||||||+|+|++..+. .+.+++. .......+...+..+.+|||||+..+..      ....++  .
T Consensus         2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t-~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~   80 (271)
T 3k53_A            2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVT-VEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDG   80 (271)
T ss_dssp             CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSS-CEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTT
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeE-EEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhcc
Confidence            4689999999999999999999998752 2344432 2233334555667899999999887655      344555  7


Q ss_pred             cCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccC
Q 006490           82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM  161 (643)
Q Consensus        82 ~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  161 (643)
                      .+|++++|+|+++...   .. +|...+.... .+|+++|+||+|+...... ..  ....+.+.++  .+++++||++|
T Consensus        81 ~~d~vi~v~D~~~~~~---~~-~~~~~~~~~~-~~p~ilv~NK~Dl~~~~~~-~~--~~~~l~~~lg--~~~~~~Sa~~g  150 (271)
T 3k53_A           81 NADVIVDIVDSTCLMR---NL-FLTLELFEME-VKNIILVLNKFDLLKKKGA-KI--DIKKMRKELG--VPVIPTNAKKG  150 (271)
T ss_dssp             CCSEEEEEEEGGGHHH---HH-HHHHHHHHTT-CCSEEEEEECHHHHHHHTC-CC--CHHHHHHHHS--SCEEECBGGGT
T ss_pred             CCcEEEEEecCCcchh---hH-HHHHHHHhcC-CCCEEEEEEChhcCccccc-HH--HHHHHHHHcC--CcEEEEEeCCC
Confidence            8999999999887532   22 3555555541 3999999999997643322 11  2566777776  47999999999


Q ss_pred             CChhHHHHHHHHHHhCC
Q 006490          162 IQVPDVFYYAQKAVLHP  178 (643)
Q Consensus       162 ~gi~~l~~~i~~~~~~~  178 (643)
                      .|++++++.+.+.+...
T Consensus       151 ~gi~~l~~~i~~~~~~~  167 (271)
T 3k53_A          151 EGVEELKRMIALMAEGK  167 (271)
T ss_dssp             BTHHHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHHHHhcc
Confidence            99999999999887544

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.79  E-value=1.9e-19  Score=192.22  Aligned_cols=199  Identities=18%  Similarity=0.210  Sum_probs=130.5

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCC--CCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhH--------Hh
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATESV--PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLN--------EE   79 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~--------~~   79 (643)
                      +..++|+|+|+||||||||+|+|++..+  +.+.++++... ....+..++..+.+|||||+.++....+        .+
T Consensus       222 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~-~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~  300 (462)
T 3geh_A          222 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDV-VESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQA  300 (462)
T ss_dssp             HHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHH-HHHEEEETTEEEEECC--------------------CC
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEE-EEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhh
Confidence            4568999999999999999999998753  44455432211 2233445678999999999876543333        36


Q ss_pred             hccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcc
Q 006490           80 LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT  159 (643)
Q Consensus        80 ~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  159 (643)
                      ++.+|++|+|+|++++.+....  .|++.+.    ++|+++|+||+|+...... .   ...    .+....+++++||+
T Consensus       301 ~~~aD~vl~VvD~s~~~~~~~~--~i~~~l~----~~piivV~NK~Dl~~~~~~-~---~~~----~~~~~~~~i~iSAk  366 (462)
T 3geh_A          301 ANTADLVLLTIDAATGWTTGDQ--EIYEQVK----HRPLILVMNKIDLVEKQLI-T---SLE----YPENITQIVHTAAA  366 (462)
T ss_dssp             CCSCSEEEEEEETTTCSCHHHH--HHHHHHT----TSCEEEEEECTTSSCGGGS-T---TCC----CCTTCCCEEEEBTT
T ss_pred             hhcCCEEEEEeccCCCCCHHHH--HHHHhcc----CCcEEEEEECCCCCcchhh-H---HHH----HhccCCcEEEEECC
Confidence            7889999999999988776652  3666553    4799999999999765332 1   111    11122469999999


Q ss_pred             cCCChhHHHHHHHHHHhCCCC-----CCCcc-ccccchHHHHHHHHhhhhhcCCCCCCCCChHHHHHHhh
Q 006490          160 TMIQVPDVFYYAQKAVLHPTA-----PLFDH-DEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQV  223 (643)
Q Consensus       160 ~~~gi~~l~~~i~~~~~~~~~-----~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~el~~~~~  223 (643)
                      +|.|++++++.+.+.+.....     +.... ........+..+|.+.....+...+..+..++++....
T Consensus       367 tg~Gi~eL~~~i~~~~~~~~~~~~~~~~~~~~R~~~~L~~a~~~L~~~~~~l~~~~~~dl~a~~Lr~a~~  436 (462)
T 3geh_A          367 QKQGIDSLETAILEIVQTGKVQAADMDLAINQRQAAALTQAKMSLEQVQATITQQLPLDFWTIDLRGAIQ  436 (462)
T ss_dssp             TTBSHHHHHHHHHHHHTTSSSSSCCSSCCCCHHHHHHHHHHHHHHHHHHHHTTTTCCGGGTHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHhccCCCCcccceechHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            999999999999998865431     12222 22235567777787777666656666777777765543

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.79  E-value=1.8e-19  Score=193.24  Aligned_cols=197  Identities=16%  Similarity=0.183  Sum_probs=131.5

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCC--CCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCC-cchh--------hhHHh
Q 006490           11 TGVRVVVVGDRGTGKSSLIAAAATES--VPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSL-ENKG--------KLNEE   79 (643)
Q Consensus        11 ~~~kI~lvG~~~vGKSsL~n~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~-~~~~--------~~~~~   79 (643)
                      ..++|+|+|+||||||||+|+|++..  ++.++++++... ....+..++..+.+|||||+. ++..        ....+
T Consensus       242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~-~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~  320 (482)
T 1xzp_A          242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDV-ISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQE  320 (482)
T ss_dssp             HCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCS-CCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred             CCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeee-EEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence            45899999999999999999999886  455566543322 223444567889999999987 5432        23468


Q ss_pred             hccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcc
Q 006490           80 LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT  159 (643)
Q Consensus        80 ~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  159 (643)
                      ++.+|++|+|+|++++.+++...  +++.+    .++|+++|+||+|+...  . ..+ .+..+   .+...++++|||+
T Consensus       321 ~~~aD~vl~VvD~s~~~s~~~~~--il~~l----~~~piivV~NK~DL~~~--~-~~~-~~~~~---~~~~~~~i~iSAk  387 (482)
T 1xzp_A          321 IEKADIVLFVLDASSPLDEEDRK--ILERI----KNKRYLVVINKVDVVEK--I-NEE-EIKNK---LGTDRHMVKISAL  387 (482)
T ss_dssp             HHHCSEEEEEEETTSCCCHHHHH--HHHHH----TTSSEEEEEEECSSCCC--C-CHH-HHHHH---HTCSTTEEEEEGG
T ss_pred             hhcccEEEEEecCCCCCCHHHHH--HHHHh----cCCCEEEEEECcccccc--c-CHH-HHHHH---hcCCCcEEEEECC
Confidence            89999999999999988876643  44444    37899999999999653  1 111 12222   2221369999999


Q ss_pred             cCCChhHHHHHHHHHHhC----CCCCCCcccc-ccchHHHHHHHHhhhhhcCCCCCCCCChHHHHHH
Q 006490          160 TMIQVPDVFYYAQKAVLH----PTAPLFDHDE-QTLKPRCVRALKRIFIICDHDMDGALNDAELNEF  221 (643)
Q Consensus       160 ~~~gi~~l~~~i~~~~~~----~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~l~~~el~~~  221 (643)
                      +|.|++++++++.+.+..    ...+.....+ ......+..+|.+............+..++++..
T Consensus       388 tg~Gi~eL~~~l~~~~~~~~~~~~~~~~~~~R~~~~l~~a~~~L~~~~~~l~~~~~~~l~a~~lr~a  454 (482)
T 1xzp_A          388 KGEGLEKLEESIYRETQEIFERGSDSLITNLRQKQLLENVKGHLEDAIKSLKEGMPVDMASIDLERA  454 (482)
T ss_dssp             GTCCHHHHHHHHHHHTHHHHHHHTTCSCCSHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHhhhcCCCCcceEhhHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence            999999999999986542    1222322222 2355666667766554443333334444555443

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.79  E-value=5.2e-19  Score=171.90  Aligned_cols=161  Identities=13%  Similarity=0.064  Sum_probs=108.5

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCC-CCcccceEEEEEEcCCCcEEEEEEecCCc----------hhhhhh
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPF-SENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPE----------EGVKKI  488 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~-~~~~~-~t~~~~~~~~~v~~~g~~~~~~i~d~~g~----------~~~~~~  488 (643)
                      ...++|+|+|.+|||||||+|+|++..+ ..... +.++.......+... ....+.+|||+|.          +.+..+
T Consensus        27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~  105 (223)
T 4dhe_A           27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPA-AEPVAHLVDLPGYGYAEVPGAAKAHWEQL  105 (223)
T ss_dssp             CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCT-TSCSEEEEECCCCCSSCCCSTHHHHHHHH
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCC-CCCcEEEEcCCCCCcccCChhhHHHHHHH
Confidence            4568999999999999999999999873 33332 333333333333322 4466778999993          333433


Q ss_pred             hccHHhhcc---CCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHH---HHHHHh
Q 006490          489 LSNKEALAS---CDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSA---RVTQEL  562 (643)
Q Consensus       489 ~~~~~~~~~---ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~---~~~~~~  562 (643)
                        ...+++.   +|++++|+|++++.+ .....++..+...      ++|+++|+||+|+..........+   +....+
T Consensus       106 --~~~~~~~~~~~d~vi~v~d~~~~~~-~~~~~~~~~l~~~------~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~  176 (223)
T 4dhe_A          106 --LSSYLQTRPQLCGMILMMDARRPLT-ELDRRMIEWFAPT------GKPIHSLLTKCDKLTRQESINALRATQKSLDAY  176 (223)
T ss_dssp             --HHHHHHHCTTEEEEEEEEETTSCCC-HHHHHHHHHHGGG------CCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred             --HHHHHhcCcCcCEEEEEEeCCCCCC-HHHHHHHHHHHhc------CCCEEEEEeccccCChhhHHHHHHHHHHHHHhh
Confidence              3344444   889999999998655 3334555555443      799999999999987544322222   222232


Q ss_pred             ------CCCCcEEeeeccC-CHHHHHHHHHHHHhCC
Q 006490          563 ------GIEPPIPVSMKSK-DLNNVFSRIIWAAEHP  591 (643)
Q Consensus       563 ------~~~~~~~vSa~~g-~i~~l~~~l~~~~~~~  591 (643)
                            ...+++++||++| |+++++++|.+.+...
T Consensus       177 ~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~  212 (223)
T 4dhe_A          177 RDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPA  212 (223)
T ss_dssp             HHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred             hhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence                  3335999999999 9999999999988633

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.78  E-value=3.7e-19  Score=190.51  Aligned_cols=160  Identities=16%  Similarity=0.136  Sum_probs=116.1

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCC--CCCCCCCCCCeeeCCcccCCceeEEEEeCCCCC----------cchhhhH-
Q 006490           11 TGVRVVVVGDRGTGKSSLIAAAATESV--PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSL----------ENKGKLN-   77 (643)
Q Consensus        11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~-   77 (643)
                      ..+||+|+|+||||||||+|+|++..+  +...++++.. .....+..++..+.||||||+.          .+..... 
T Consensus       174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d-~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~  252 (436)
T 2hjg_A          174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRD-AVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRAL  252 (436)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC----------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHH
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceee-eeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHH
Confidence            458999999999999999999999875  3445543222 1233444566789999999973          2322222 


Q ss_pred             HhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcc--cceEEE
Q 006490           78 EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE--IETCVE  155 (643)
Q Consensus        78 ~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  155 (643)
                      .+++.+|++|+|+|++++.+.++.  .|...+...  ++|+++|+||+|+...... ..++..+.+...+..  ..++++
T Consensus       253 ~~~~~ad~~llv~D~~~~~s~~~~--~~~~~~~~~--~~~iiiv~NK~Dl~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~  327 (436)
T 2hjg_A          253 KAIDRSEVVAVVLDGEEGIIEQDK--RIAGYAHEA--GKAVVIVVNKWDAVDKDES-TMKEFEENIRDHFQFLDYAPILF  327 (436)
T ss_dssp             HHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHHT--TCEEEEEEECGGGSCCCTT-HHHHHHHHHHHHCGGGTTSCEEE
T ss_pred             HHHHhCCEEEEEEcCCcCCcHHHH--HHHHHHHHc--CCcEEEEEECccCCCcchH-HHHHHHHHHHHhcccCCCCCEEE
Confidence            578999999999999999888876  488887765  8999999999999865543 333444444444432  237999


Q ss_pred             eCcccCCChhHHHHHHHHHHh
Q 006490          156 CSATTMIQVPDVFYYAQKAVL  176 (643)
Q Consensus       156 ~Sa~~~~gi~~l~~~i~~~~~  176 (643)
                      +||++|.|++++|+.+.+.+.
T Consensus       328 ~SA~tg~~v~~l~~~i~~~~~  348 (436)
T 2hjg_A          328 MSALTKKRIHTLMPAIIKASE  348 (436)
T ss_dssp             CCTTTCTTGGGHHHHHHHHHH
T ss_pred             EecccCCCHHHHHHHHHHHHH
Confidence            999999999999999988764

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.78  E-value=1.3e-18  Score=174.31  Aligned_cols=156  Identities=21%  Similarity=0.221  Sum_probs=120.1

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhh------hhccHHhh-
Q 006490          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK------ILSNKEAL-  495 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~------~~~~~~~~-  495 (643)
                      .++|+++|++|||||||+|+|++..+.....|+++.+.....+...  ...+.+||++|...+..      +  +..++ 
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~--~~~~~~   78 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYR--EKEFLVVDLPGIYSLTAHSIDELI--ARNFIL   78 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEET--TEEEEEEECCCCSCCCSSCHHHHH--HHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEEC--CceEEEEeCCCccccccCCHHHHH--HHHhhh
Confidence            4799999999999999999999987744444666655555556555  34578899999776544      2  33344 


Q ss_pred             -ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCC-CcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeec
Q 006490          496 -ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYG-VPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMK  573 (643)
Q Consensus       496 -~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~-~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~  573 (643)
                       ..+|++++|+|+++..   ....+...+...      + .|+++|+||+|+...+........+++.++++ ++++||+
T Consensus        79 ~~~~d~vi~v~D~~~~~---~~~~~~~~~~~~------~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~-~~~~Sa~  148 (271)
T 3k53_A           79 DGNADVIVDIVDSTCLM---RNLFLTLELFEM------EVKNIILVLNKFDLLKKKGAKIDIKKMRKELGVP-VIPTNAK  148 (271)
T ss_dssp             TTCCSEEEEEEEGGGHH---HHHHHHHHHHHT------TCCSEEEEEECHHHHHHHTCCCCHHHHHHHHSSC-EEECBGG
T ss_pred             ccCCcEEEEEecCCcch---hhHHHHHHHHhc------CCCCEEEEEEChhcCcccccHHHHHHHHHHcCCc-EEEEEeC
Confidence             6899999999999853   344455555554      5 99999999999876544444578889999987 9999999


Q ss_pred             cC-CHHHHHHHHHHHHhCCC
Q 006490          574 SK-DLNNVFSRIIWAAEHPH  592 (643)
Q Consensus       574 ~g-~i~~l~~~l~~~~~~~~  592 (643)
                      +| |++++++.+.+.+....
T Consensus       149 ~g~gi~~l~~~i~~~~~~~~  168 (271)
T 3k53_A          149 KGEGVEELKRMIALMAEGKV  168 (271)
T ss_dssp             GTBTHHHHHHHHHHHHHTCC
T ss_pred             CCCCHHHHHHHHHHHHhccc
Confidence            99 99999999999886543

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.77  E-value=4.5e-19  Score=190.10  Aligned_cols=184  Identities=17%  Similarity=0.203  Sum_probs=126.5

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCcEEEEEEecCCch-hhhh------hhccH
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPEE-GVKK------ILSNK  492 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~-~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~-~~~~------~~~~~  492 (643)
                      +..++|+|+|.||||||||+|+|++.++..+.+ |+++.+.....+...|  ..+.+|||+|.. ....      +.++.
T Consensus       241 r~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~  318 (482)
T 1xzp_A          241 NRGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTL  318 (482)
T ss_dssp             HHCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHH
T ss_pred             cCCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHH
Confidence            456899999999999999999999988765544 4444444455555653  467889999986 4321      12256


Q ss_pred             HhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCC-CCcEEee
Q 006490          493 EALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGI-EPPIPVS  571 (643)
Q Consensus       493 ~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~vS  571 (643)
                      .+++.||++|+|+|++++.+++.. .++..+    .    ++|+++|+||+|+... ...+....+   .+. .++++||
T Consensus       319 ~~~~~aD~vl~VvD~s~~~s~~~~-~il~~l----~----~~piivV~NK~DL~~~-~~~~~~~~~---~~~~~~~i~iS  385 (482)
T 1xzp_A          319 QEIEKADIVLFVLDASSPLDEEDR-KILERI----K----NKRYLVVINKVDVVEK-INEEEIKNK---LGTDRHMVKIS  385 (482)
T ss_dssp             HHHHHCSEEEEEEETTSCCCHHHH-HHHHHH----T----TSSEEEEEEECSSCCC-CCHHHHHHH---HTCSTTEEEEE
T ss_pred             HHhhcccEEEEEecCCCCCCHHHH-HHHHHh----c----CCCEEEEEECcccccc-cCHHHHHHH---hcCCCcEEEEE
Confidence            788999999999999998776553 333322    1    7899999999999753 122233222   332 2599999


Q ss_pred             eccC-CHHHHHHHHHHHHhCCCCCCCCcccccchhhhhhhhchhhHHHHHH
Q 006490          572 MKSK-DLNNVFSRIIWAAEHPHLNIPETETGRNRKRYRHLVNSSLVFVSVG  621 (643)
Q Consensus       572 a~~g-~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g  621 (643)
                      |++| |+++++++|.+.+.....  ..........|+.++++++..++.-.
T Consensus       386 Aktg~Gi~eL~~~l~~~~~~~~~--~~~~~~~~~~R~~~~l~~a~~~L~~~  434 (482)
T 1xzp_A          386 ALKGEGLEKLEESIYRETQEIFE--RGSDSLITNLRQKQLLENVKGHLEDA  434 (482)
T ss_dssp             GGGTCCHHHHHHHHHHHTHHHHH--HHTTCSCCSHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHhhhcC--CCCcceEhhHHHHHHHHHHHHHHHHH
Confidence            9999 999999999997542100  01112234567777788777666543

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.77  E-value=5.8e-19  Score=194.14  Aligned_cols=163  Identities=15%  Similarity=0.175  Sum_probs=119.5

Q ss_pred             cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEE------EEc--CCCcEEEEEEecCCchhhhhhhcc
Q 006490          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNV------VDQ--PGGNKKTLILQEIPEEGVKKILSN  491 (643)
Q Consensus       420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~------v~~--~g~~~~~~i~d~~g~~~~~~~~~~  491 (643)
                      ....+||+++|.+|||||||+|+|++..+...+.+|++..+....      +.+  .+....+.+||++|++.+..+  .
T Consensus        38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~--~  115 (535)
T 3dpu_A           38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHAS--H  115 (535)
T ss_dssp             CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTT--C
T ss_pred             cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHH--H
Confidence            456799999999999999999999999888777778776655432      222  234678899999999888877  7


Q ss_pred             HHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEe
Q 006490          492 KEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPV  570 (643)
Q Consensus       492 ~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~v  570 (643)
                      ..+++.+|++|+|+|+++.   +....|+..+.....    ++|+|+|+||+|+...... .+..+.++...+.+ +++|
T Consensus       116 ~~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~----~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~v  187 (535)
T 3dpu_A          116 QFFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGG----KSPVIVVMNKIDENPSYNIEQKKINERFPAIENR-FHRI  187 (535)
T ss_dssp             HHHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHSS----SCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTC-EEEC
T ss_pred             HHHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCC----CCCEEEEEECCCcccccccCHHHHHHHHHhcCCc-eEEE
Confidence            7788999999999999875   456778888887754    6999999999999865443 55667777777876 9999


Q ss_pred             eeccC-CHHHHHHHHHHHHhCCC
Q 006490          571 SMKSK-DLNNVFSRIIWAAEHPH  592 (643)
Q Consensus       571 Sa~~g-~i~~l~~~l~~~~~~~~  592 (643)
                      ||++| |++++++.|.+.+....
T Consensus       188 SA~~g~gi~eL~~~l~~~~~~~~  210 (535)
T 3dpu_A          188 SCKNGDGVESIAKSLKSAVLHPD  210 (535)
T ss_dssp             CC-----CTTHHHHHHHHHTCTT
T ss_pred             ecCcccCHHHHHHHHHHHHhccc
Confidence            99999 99999999999887543

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.76  E-value=4.9e-19  Score=178.01  Aligned_cols=155  Identities=13%  Similarity=0.126  Sum_probs=111.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCC---CCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhh-hhccHHhhccCCE
Q 006490          425 RCLLFGPQNAGKSALLNSFLERPFSE---NYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK-ILSNKEALASCDV  500 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~~~~~---~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~-~~~~~~~~~~ad~  500 (643)
                      ||+++|.+|||||||++++.++....   .+.||.+..+..  +  . ...++.+|||+|++++.. ...+..++++|++
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~--v--~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~   75 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH--F--S-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA   75 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE--E--C-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE--E--c-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence            68999999999999999988765433   234677665542  2  2 457789999999998853 1015678999999


Q ss_pred             EEEEEeCCCh--hhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccc-------c-HHHHHHHHHH----hCCCC
Q 006490          501 TIFVYDSSDE--YSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-------A-VQDSARVTQE----LGIEP  566 (643)
Q Consensus       501 illv~D~s~~--~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~-------~-~~~~~~~~~~----~~~~~  566 (643)
                      +|+|||++++  .+++....|+..+....+    ++|+++|+||+|+..+..       + .+..+++++.    +++. 
T Consensus        76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~----~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~-  150 (331)
T 3r7w_B           76 LVYVIDSQDEYINAITNLAMIIEYAYKVNP----SINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVS-  150 (331)
T ss_dssp             EEEECCCSSCTTHHHHHHHHHHHHHHHHCT----TCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEE-
T ss_pred             EEEEEECCchHHHHHHHHHHHHHHHhhcCC----CCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCce-
Confidence            9999999997  222333334444444333    799999999999986421       1 3445555654    4555 


Q ss_pred             cEEeeeccCCHHHHHHHHHHHHh
Q 006490          567 PIPVSMKSKDLNNVFSRIIWAAE  589 (643)
Q Consensus       567 ~~~vSa~~g~i~~l~~~l~~~~~  589 (643)
                      +++|||++.++.++|..+++.+.
T Consensus       151 f~eTSAkd~nV~eAFs~iv~~li  173 (331)
T 3r7w_B          151 FYLTSIFDHSIYEAFSRIVQKLI  173 (331)
T ss_dssp             EECCCSSSSHHHHHHHHHHTTSS
T ss_pred             EEEeccCCCcHHHHHHHHHHHHH
Confidence            99999997799999999987653

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.76  E-value=7.7e-19  Score=187.50  Aligned_cols=185  Identities=15%  Similarity=0.189  Sum_probs=119.5

Q ss_pred             cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCcEEEEEEecCCchhhhh------hhccH
Q 006490          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK------ILSNK  492 (643)
Q Consensus       420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~-~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~------~~~~~  492 (643)
                      .+..++|+|+|+||||||||+|+|++.++..+.. ++++.+.....+...|  ..+.+|||+|......      +.++.
T Consensus       221 ~r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~  298 (462)
T 3geh_A          221 LRTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSR  298 (462)
T ss_dssp             HHHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------
T ss_pred             hcCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHh
Confidence            3467899999999999999999999987765554 4444334333444443  5678899999654332      12345


Q ss_pred             HhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeee
Q 006490          493 EALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSM  572 (643)
Q Consensus       493 ~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa  572 (643)
                      .++..+|++++|+|++++.+... ..++..+.        ..|+++|+||+|+....... ..+.+.   ...++++|||
T Consensus       299 ~~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~--------~~piivV~NK~Dl~~~~~~~-~~~~~~---~~~~~i~iSA  365 (462)
T 3geh_A          299 QAANTADLVLLTIDAATGWTTGD-QEIYEQVK--------HRPLILVMNKIDLVEKQLIT-SLEYPE---NITQIVHTAA  365 (462)
T ss_dssp             CCCCSCSEEEEEEETTTCSCHHH-HHHHHHHT--------TSCEEEEEECTTSSCGGGST-TCCCCT---TCCCEEEEBT
T ss_pred             hhhhcCCEEEEEeccCCCCCHHH-HHHHHhcc--------CCcEEEEEECCCCCcchhhH-HHHHhc---cCCcEEEEEC
Confidence            57889999999999999877543 44544442        57999999999998754322 111111   2335899999


Q ss_pred             ccC-CHHHHHHHHHHHHhCCCCCCCCcccccchhhhhhhhchhhHHHHH
Q 006490          573 KSK-DLNNVFSRIIWAAEHPHLNIPETETGRNRKRYRHLVNSSLVFVSV  620 (643)
Q Consensus       573 ~~g-~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  620 (643)
                      ++| |++++++.|.+.+.......++. ......|+.+++.++..++.-
T Consensus       366 ktg~Gi~eL~~~i~~~~~~~~~~~~~~-~~~~~~R~~~~L~~a~~~L~~  413 (462)
T 3geh_A          366 AQKQGIDSLETAILEIVQTGKVQAADM-DLAINQRQAAALTQAKMSLEQ  413 (462)
T ss_dssp             TTTBSHHHHHHHHHHHHTTSSSSSCCS-SCCCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHhccCCCCccc-ceechHHHHHHHHHHHHHHHH
Confidence            999 99999999999887544222222 223456777777777766543

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.76  E-value=4.4e-18  Score=182.27  Aligned_cols=154  Identities=21%  Similarity=0.265  Sum_probs=102.0

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCcEEEEEEecCCchhh------hhh-hccHHhh
Q 006490          424 FRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV------KKI-LSNKEAL  495 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~-~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~------~~~-~~~~~~~  495 (643)
                      .+|+|+|+||||||||+|+|++...+.+.+ |+++.+.....+.+.|  ..+.+|||+|.+..      ..+ ..+..++
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   79 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYG--KTFKLVDTCGVFDNPQDIISQKMKEVTLNMI   79 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETT--EEEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECC--eEEEEEECCCccccccchHHHHHHHHHHHHH
Confidence            379999999999999999999988665544 4443334445555653  45778999997532      111 1256788


Q ss_pred             ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHH-HHHHHHhCCCCcEEeeecc
Q 006490          496 ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDS-ARVTQELGIEPPIPVSMKS  574 (643)
Q Consensus       496 ~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~-~~~~~~~~~~~~~~vSa~~  574 (643)
                      +.||++++|+|++++.+... ..+...+...      ++|+++|+||+|+...  ..... .++. .+++.+++++||++
T Consensus        80 ~~ad~il~V~D~~~~~~~~d-~~i~~~l~~~------~~p~ilv~NK~D~~~~--~~~~~~~~~~-~lg~~~~~~iSA~~  149 (439)
T 1mky_A           80 READLVLFVVDGKRGITKED-ESLADFLRKS------TVDTILVANKAENLRE--FEREVKPELY-SLGFGEPIPVSAEH  149 (439)
T ss_dssp             TTCSEEEEEEETTTCCCHHH-HHHHHHHHHH------TCCEEEEEESCCSHHH--HHHHTHHHHG-GGSSCSCEECBTTT
T ss_pred             HhCCEEEEEEECCCCCCHHH-HHHHHHHHHc------CCCEEEEEeCCCCccc--cHHHHHHHHH-hcCCCCEEEEeccC
Confidence            99999999999998765432 1222223332      7999999999998542  11222 3333 46775689999999


Q ss_pred             C-CHHHHHHHHHHHHh
Q 006490          575 K-DLNNVFSRIIWAAE  589 (643)
Q Consensus       575 g-~i~~l~~~l~~~~~  589 (643)
                      | |++++++.+.+.+.
T Consensus       150 g~gv~~L~~~i~~~l~  165 (439)
T 1mky_A          150 NINLDTMLETIIKKLE  165 (439)
T ss_dssp             TBSHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhcc
Confidence            9 99999999998775

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.75  E-value=3.1e-18  Score=184.37  Aligned_cols=162  Identities=15%  Similarity=0.159  Sum_probs=115.9

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCC--CCCCCCCCCCCeeeCCcccCCceeEEEEeCCC----------CCcchhhh
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATES--VPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSS----------SLENKGKL   76 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G----------~~~~~~~~   76 (643)
                      ....+||+++|++|||||||+|+|++..  .+...++++... ....+..++..+.||||||          ++.+....
T Consensus       192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~-~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~  270 (456)
T 4dcu_A          192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDA-VDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLR  270 (456)
T ss_dssp             CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CT-TSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred             ccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEE-EEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHH
Confidence            3456899999999999999999999876  334444432221 2234445667899999999          44444443


Q ss_pred             H-HhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcc--cceE
Q 006490           77 N-EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE--IETC  153 (643)
Q Consensus        77 ~-~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~--~~~~  153 (643)
                      . .+++.+|++|+|+|+++..+...  ..|...+...  ++|+|+|+||+|+...+.. ..++..+.+...+..  ..++
T Consensus       271 ~~~~~~~ad~~llviD~~~~~~~~~--~~~~~~~~~~--~~~~ilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~  345 (456)
T 4dcu_A          271 ALKAIDRSEVVAVVLDGEEGIIEQD--KRIAGYAHEA--GKAVVIVVNKWDAVDKDES-TMKEFEENIRDHFQFLDYAPI  345 (456)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHH--HHHHHHHHHT--TCEEEEEEECGGGSCCCSS-HHHHHHHHHHHHCGGGTTSCE
T ss_pred             HHHHHhhCCEEEEEEeCCCCcCHHH--HHHHHHHHHc--CCCEEEEEEChhcCCCchH-HHHHHHHHHHHhcccCCCCCE
Confidence            3 47899999999999888655443  3578888775  7999999999999876554 444444444444321  2479


Q ss_pred             EEeCcccCCChhHHHHHHHHHHh
Q 006490          154 VECSATTMIQVPDVFYYAQKAVL  176 (643)
Q Consensus       154 ~~~Sa~~~~gi~~l~~~i~~~~~  176 (643)
                      ++|||++|.||+++|+.+.+.+.
T Consensus       346 ~~~SA~~g~gv~~l~~~i~~~~~  368 (456)
T 4dcu_A          346 LFMSALTKKRIHTLMPAIIKASE  368 (456)
T ss_dssp             EECCTTTCTTGGGHHHHHHHHHH
T ss_pred             EEEcCCCCcCHHHHHHHHHHHHH
Confidence            99999999999999999988764

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.75  E-value=2.6e-18  Score=176.39  Aligned_cols=164  Identities=16%  Similarity=0.204  Sum_probs=117.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCCCCCeeeCCcccCC-ceeEEEEeCCCCCc----chhhhHHh---hccC
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATESVP-EKVPPVHAPTRLPPDFYPD-RVPVTIIDTSSSLE----NKGKLNEE---LKRA   83 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~i~Dt~G~~~----~~~~~~~~---~~~a   83 (643)
                      .+|+|+|.+|||||||+|+|++.... .+++.++...... .+... ...+.||||||+.+    +..+...+   ++.+
T Consensus       159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g-~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~  237 (342)
T 1lnz_A          159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLG-MVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERT  237 (342)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEE-EEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred             CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEE-EEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence            36899999999999999999987632 2333222111111 12222 36899999999643    23343444   4559


Q ss_pred             CEEEEEEECCC---cccHHHHHHHHHHHHHhcC---CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeC
Q 006490           84 DAVVLTYACNQ---QSTLSRLSSYWLPELRRLE---IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECS  157 (643)
Q Consensus        84 d~il~v~d~~~---~~s~~~~~~~~~~~l~~~~---~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  157 (643)
                      |++|+|+|+++   +.+++.+. .|..++..+.   .++|+++|+||+|+...      .+..+.+.+.+....++++||
T Consensus       238 d~ll~VvD~s~~~~~~~~~~~~-~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~------~e~~~~l~~~l~~~~~v~~iS  310 (342)
T 1lnz_A          238 RVIVHVIDMSGLEGRDPYDDYL-TINQELSEYNLRLTERPQIIVANKMDMPEA------AENLEAFKEKLTDDYPVFPIS  310 (342)
T ss_dssp             CEEEEEEESSCSSCCCHHHHHH-HHHHHHHHSCSSTTTSCBCBEEECTTSTTH------HHHHHHHHHHCCSCCCBCCCS
T ss_pred             cEEEEEEECCcccccChHHHHH-HHHHHHHHhhhhhcCCCEEEEEECccCCCC------HHHHHHHHHHhhcCCCEEEEE
Confidence            99999999998   78888887 5888888764   37999999999998642      233455666665324689999


Q ss_pred             cccCCChhHHHHHHHHHHhCCCC-CCCc
Q 006490          158 ATTMIQVPDVFYYAQKAVLHPTA-PLFD  184 (643)
Q Consensus       158 a~~~~gi~~l~~~i~~~~~~~~~-~~~~  184 (643)
                      |+++.|++++++++.+.+..... +.|+
T Consensus       311 A~tg~gi~eL~~~l~~~l~~~~~~~~y~  338 (342)
T 1lnz_A          311 AVTREGLRELLFEVANQLENTPEFPLYD  338 (342)
T ss_dssp             SCCSSTTHHHHHHHHHHHTSCCCCCSSC
T ss_pred             CCCCcCHHHHHHHHHHHHhhCccccCCC
Confidence            99999999999999998865443 3443

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.75  E-value=6.8e-18  Score=173.21  Aligned_cols=163  Identities=15%  Similarity=0.105  Sum_probs=120.3

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhh----hhh-hccHHhhccC
Q 006490          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV----KKI-LSNKEALASC  498 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~----~~~-~~~~~~~~~a  498 (643)
                      .+|+|+|.+|||||||+|+|++........+.++.......+..+ ....+.+||++|....    ..+ ......+..+
T Consensus       159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~-~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~  237 (342)
T 1lnz_A          159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETD-DGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERT  237 (342)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECS-SSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred             CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeC-CCceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence            469999999999999999999876543333422222334456666 3457889999996431    112 1133445679


Q ss_pred             CEEEEEEeCCC---hhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCC-CCcEEeeecc
Q 006490          499 DVTIFVYDSSD---EYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGI-EPPIPVSMKS  574 (643)
Q Consensus       499 d~illv~D~s~---~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~vSa~~  574 (643)
                      |++|+|+|+++   +.+++....|..++..+.... .++|+++|+||+|+....   +..+++++.++. .++++|||++
T Consensus       238 d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l-~~~p~ilV~NK~Dl~~~~---e~~~~l~~~l~~~~~v~~iSA~t  313 (342)
T 1lnz_A          238 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRL-TERPQIIVANKMDMPEAA---ENLEAFKEKLTDDYPVFPISAVT  313 (342)
T ss_dssp             CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSST-TTSCBCBEEECTTSTTHH---HHHHHHHHHCCSCCCBCCCSSCC
T ss_pred             cEEEEEEECCcccccChHHHHHHHHHHHHHhhhhh-cCCCEEEEEECccCCCCH---HHHHHHHHHhhcCCCEEEEECCC
Confidence            99999999998   778888888999988764321 179999999999997632   345677777763 3589999999


Q ss_pred             C-CHHHHHHHHHHHHhCC
Q 006490          575 K-DLNNVFSRIIWAAEHP  591 (643)
Q Consensus       575 g-~i~~l~~~l~~~~~~~  591 (643)
                      + |+++++++|.+.+...
T Consensus       314 g~gi~eL~~~l~~~l~~~  331 (342)
T 1lnz_A          314 REGLRELLFEVANQLENT  331 (342)
T ss_dssp             SSTTHHHHHHHHHHHTSC
T ss_pred             CcCHHHHHHHHHHHHhhC
Confidence            9 9999999999988643

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.75  E-value=8.8e-18  Score=170.43  Aligned_cols=155  Identities=16%  Similarity=0.254  Sum_probs=110.6

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-C-CcccceEEEEEEcCCCcEEEEEEecCCch-hhhh-----h-hccHH
Q 006490          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYA-P-TTGEQYAVNVVDQPGGNKKTLILQEIPEE-GVKK-----I-LSNKE  493 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~-~-t~~~~~~~~~v~~~g~~~~~~i~d~~g~~-~~~~-----~-~~~~~  493 (643)
                      ..+|+|+|+||||||||+|+|++..+..++. + |+... ....+..  +...+.++||+|.. ....     + .....
T Consensus         8 ~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~-~~gi~~~--~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~   84 (301)
T 1ega_A            8 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHR-IVGIHTE--GAYQAIYVDTPGLHMEEKRAINRLMNKAASS   84 (301)
T ss_dssp             EEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSC-EEEEEEE--TTEEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceee-EEEEEEE--CCeeEEEEECcCCCccchhhHHHHHHHHHHH
Confidence            3579999999999999999999998766544 3 44332 2223333  34577889999986 2211     1 11456


Q ss_pred             hhccCCEEEEEEeCCChhhHHHHHHHHH-HHHHhcCCCCCCCcEEEEEeCCCCCC-ccccHHHHHHHHHHhCCCCcEEee
Q 006490          494 ALASCDVTIFVYDSSDEYSWKRTKELLV-EVARLGEDSGYGVPCLLIASKDDLKP-YTMAVQDSARVTQELGIEPPIPVS  571 (643)
Q Consensus       494 ~~~~ad~illv~D~s~~~s~~~~~~~~~-~i~~~~~~~~~~~pvilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~vS  571 (643)
                      +++.+|++++|+|+++ .+  ....++. .+...      +.|+++|+||+|+.. .....+..+++.+.+++.+++++|
T Consensus        85 ~l~~~D~vl~Vvd~~~-~~--~~~~~i~~~l~~~------~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iS  155 (301)
T 1ega_A           85 SIGDVELVIFVVEGTR-WT--PDDEMVLNKLREG------KAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPIS  155 (301)
T ss_dssp             CCCCEEEEEEEEETTC-CC--HHHHHHHHHHHSS------SSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECC
T ss_pred             HHhcCCEEEEEEeCCC-CC--HHHHHHHHHHHhc------CCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEE
Confidence            7899999999999987 33  2223333 33322      789999999999986 233345666677777775689999


Q ss_pred             eccC-CHHHHHHHHHHHHh
Q 006490          572 MKSK-DLNNVFSRIIWAAE  589 (643)
Q Consensus       572 a~~g-~i~~l~~~l~~~~~  589 (643)
                      |++| |++++++.+.+.+.
T Consensus       156 A~~g~~v~~l~~~i~~~l~  174 (301)
T 1ega_A          156 AETGLNVDTIAAIVRKHLP  174 (301)
T ss_dssp             TTTTTTHHHHHHHHHTTCC
T ss_pred             CCCCCCHHHHHHHHHHhCC
Confidence            9999 99999999998764

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.75  E-value=3.6e-18  Score=165.31  Aligned_cols=149  Identities=18%  Similarity=0.293  Sum_probs=100.3

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhcc----C
Q 006490            8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKR----A   83 (643)
Q Consensus         8 ~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~----a   83 (643)
                      ...+.++|+|+|++|||||||+++|++..+....+....+..  ..+  ....+.+|||||++.+...+..+++.    +
T Consensus         8 ~~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~--~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   83 (218)
T 1nrj_B            8 QKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA--ADY--DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFV   83 (218)
T ss_dssp             --CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEE--TTG--GGSSCEEEECCCCGGGTHHHHHHHHHHGGGE
T ss_pred             ccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEE--EEe--eCceEEEEECCCcHHHHHHHHHHHHhccccC
Confidence            355678999999999999999999999886442222111111  112  56789999999999988888888877    8


Q ss_pred             CEEEEEEECC-CcccHHHHHHHHHHHHHh-----cCCCCcEEEEEecccCCCCCccchh----hhhhhHHHHhhcccceE
Q 006490           84 DAVVLTYACN-QQSTLSRLSSYWLPELRR-----LEIKVPIIVAGCKLDLRGDHNATSL----EEVMGPIMQQFREIETC  153 (643)
Q Consensus        84 d~il~v~d~~-~~~s~~~~~~~~~~~l~~-----~~~~~pvilv~NK~D~~~~~~~~~~----~~~~~~~~~~~~~~~~~  153 (643)
                      |++|+|+|++ ++.++..... |+..+..     ...++|+++|+||+|+.........    .+.+..+....+  .++
T Consensus        84 ~~~i~v~D~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~--~~~  160 (218)
T 1nrj_B           84 KGLIFMVDSTVDPKKLTTTAE-FLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRK--KSL  160 (218)
T ss_dssp             EEEEEEEETTSCTTCCHHHHH-HHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHH--HHH
T ss_pred             CEEEEEEECCCChHHHHHHHH-HHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHh--ccc
Confidence            9999999999 8888888875 5554432     2358999999999999876543111    233444444444  258


Q ss_pred             EEeCcccCCC
Q 006490          154 VECSATTMIQ  163 (643)
Q Consensus       154 ~~~Sa~~~~g  163 (643)
                      +++||++|.+
T Consensus       161 ~~~Sa~~~~~  170 (218)
T 1nrj_B          161 NEVERKINEE  170 (218)
T ss_dssp             HC--------
T ss_pred             cccccccccc
Confidence            9999998865

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.74  E-value=6.4e-18  Score=171.47  Aligned_cols=157  Identities=18%  Similarity=0.166  Sum_probs=109.8

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCCCCCCeeeCCcccCCceeEEEEeCCCCC-c--------chhhhHHh
Q 006490           11 TGVRVVVVGDRGTGKSSLIAAAATESVP--EKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSL-E--------NKGKLNEE   79 (643)
Q Consensus        11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~-~--------~~~~~~~~   79 (643)
                      +..+|+|+|+||||||||+|+|++..+.  ...++++. .+....+..++..+.+|||||+. .        +......+
T Consensus         7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr-~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~   85 (301)
T 1ega_A            7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTR-HRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSS   85 (301)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCS-SCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcce-eeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHH
Confidence            4457999999999999999999998753  22333221 11223344567889999999987 2        22334467


Q ss_pred             hccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcc
Q 006490           80 LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT  159 (643)
Q Consensus        80 ~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  159 (643)
                      ++.+|++++|+|+++ -+.  ....+...+...  +.|+++|+||+|+.....  ...+.+..+.+.++ ...++++||+
T Consensus        86 l~~~D~vl~Vvd~~~-~~~--~~~~i~~~l~~~--~~P~ilvlNK~D~~~~~~--~~~~~l~~l~~~~~-~~~~i~iSA~  157 (301)
T 1ega_A           86 IGDVELVIFVVEGTR-WTP--DDEMVLNKLREG--KAPVILAVNKVDNVQEKA--DLLPHLQFLASQMN-FLDIVPISAE  157 (301)
T ss_dssp             CCCEEEEEEEEETTC-CCH--HHHHHHHHHHSS--SSCEEEEEESTTTCCCHH--HHHHHHHHHHTTSC-CSEEEECCTT
T ss_pred             HhcCCEEEEEEeCCC-CCH--HHHHHHHHHHhc--CCCEEEEEECcccCccHH--HHHHHHHHHHHhcC-cCceEEEECC
Confidence            889999999999877 332  222344555543  799999999999875211  23344455555444 2368999999


Q ss_pred             cCCChhHHHHHHHHHHh
Q 006490          160 TMIQVPDVFYYAQKAVL  176 (643)
Q Consensus       160 ~~~gi~~l~~~i~~~~~  176 (643)
                      +|.|++++++.+.+.+.
T Consensus       158 ~g~~v~~l~~~i~~~l~  174 (301)
T 1ega_A          158 TGLNVDTIAAIVRKHLP  174 (301)
T ss_dssp             TTTTHHHHHHHHHTTCC
T ss_pred             CCCCHHHHHHHHHHhCC
Confidence            99999999999887654

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.73  E-value=2.1e-18  Score=181.64  Aligned_cols=158  Identities=18%  Similarity=0.210  Sum_probs=109.0

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCCCCCCee-eCCcccCCceeEEEEeCCCCCcchhh-------hH
Q 006490            8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVP--EKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGK-------LN   77 (643)
Q Consensus         8 ~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~-------~~   77 (643)
                      .....++|+|+|++|||||||+|+|++..+.  ...++++.... ....+. ....+.+|||||+.++...       ..
T Consensus        30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~-~~~~l~liDTpG~~d~~~l~~~~~~~~~  108 (423)
T 3qq5_A           30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELH-PIGPVTLVDTPGLDDVGELGRLRVEKAR  108 (423)
T ss_dssp             --CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEET-TTEEEEEEECSSTTCCCTTCCCCHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEEC-CCCeEEEEECcCCCcccchhHHHHHHHH
Confidence            3455689999999999999999999998853  23333222111 222222 2238999999999866443       34


Q ss_pred             HhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeC
Q 006490           78 EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECS  157 (643)
Q Consensus        78 ~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  157 (643)
                      .+++.+|++|+|+|++ ..   .....|+..+.+.  ++|+++|+||+|+......    +..+.+.+.++  .+++++|
T Consensus       109 ~~l~~aD~vllVvD~~-~~---~~~~~~l~~l~~~--~~piIvV~NK~Dl~~~~~~----~~~~~l~~~~g--~~v~~vS  176 (423)
T 3qq5_A          109 RVFYRADCGILVTDSA-PT---PYEDDVVNLFKEM--EIPFVVVVNKIDVLGEKAE----ELKGLYESRYE--AKVLLVS  176 (423)
T ss_dssp             HHHTSCSEEEEECSSS-CC---HHHHHHHHHHHHT--TCCEEEECCCCTTTTCCCT----HHHHHSSCCTT--CCCCCCS
T ss_pred             HHHhcCCEEEEEEeCC-Ch---HHHHHHHHHHHhc--CCCEEEEEeCcCCCCccHH----HHHHHHHHHcC--CCEEEEE
Confidence            6889999999999982 22   2223588888887  8999999999999875433    33444555554  3689999


Q ss_pred             cccCCChhHHHHHHHHHHhCC
Q 006490          158 ATTMIQVPDVFYYAQKAVLHP  178 (643)
Q Consensus       158 a~~~~gi~~l~~~i~~~~~~~  178 (643)
                      |++|.|++++++.+.+.+...
T Consensus       177 Aktg~gI~eL~~~L~~~l~~~  197 (423)
T 3qq5_A          177 ALQKKGFDDIGKTISEILPGD  197 (423)
T ss_dssp             SCCTTSTTTHHHHHHHHSCCC
T ss_pred             CCCCCCHHHHHHHHHHhhhhh
Confidence            999999999999999987543

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.73  E-value=8.1e-18  Score=167.62  Aligned_cols=172  Identities=15%  Similarity=0.124  Sum_probs=109.3

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCC-CCCCCCCC-CCCeeeCCcccCCceeEEEEeCCCCCcchhh-----------
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATES-VPEKVPPV-HAPTRLPPDFYPDRVPVTIIDTSSSLENKGK-----------   75 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-----------   75 (643)
                      ..+.++|+|+|++|||||||+|+|++.. +.....+. .+.......+...+..+.||||||+..+...           
T Consensus        19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~   98 (260)
T 2xtp_A           19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRC   98 (260)
T ss_dssp             --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHH
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHH
Confidence            3456899999999999999999999987 33332221 1122222234456788999999998754322           


Q ss_pred             hHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcC---CCCcEEEEEe-cccCCCCCccchh-----hhhhhHHHHh
Q 006490           76 LNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLE---IKVPIIVAGC-KLDLRGDHNATSL-----EEVMGPIMQQ  146 (643)
Q Consensus        76 ~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~---~~~pvilv~N-K~D~~~~~~~~~~-----~~~~~~~~~~  146 (643)
                      ...+++.+|++|+|+|+++.....   ..+...+.+..   ...|+++|+| |+|+...... ..     ...+..+...
T Consensus        99 ~~~~~~~~d~il~V~d~~~~~~~~---~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~~~-~~i~~~~~~~~~~~~~~  174 (260)
T 2xtp_A           99 YLLSAPGPHVLLLVTQLGRYTSQD---QQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGSLM-DYMHDSDNKALSKLVAA  174 (260)
T ss_dssp             HHHHTTCCSEEEEEEETTCCCHHH---HHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHH-HHHHHCCCHHHHHHHHH
T ss_pred             HHhcCCCCcEEEEEEeCCCCCHHH---HHHHHHHHHHhCchhhccEEEEEEcccccCCccHH-HHHHhcchHHHHHHHHH
Confidence            223778999999999998633222   22334443321   1457776666 9999743211 00     0223345555


Q ss_pred             hcccce-E--EEeCcccCCChhHHHHHHHHHHhCCCCCCCc
Q 006490          147 FREIET-C--VECSATTMIQVPDVFYYAQKAVLHPTAPLFD  184 (643)
Q Consensus       147 ~~~~~~-~--~~~Sa~~~~gi~~l~~~i~~~~~~~~~~~~~  184 (643)
                      ++.... +  +++||++|.|++++|+.+.+.+.......|.
T Consensus       175 ~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~~~~~~  215 (260)
T 2xtp_A          175 CGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEKNGDHYT  215 (260)
T ss_dssp             TTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred             hCCeEEEecCcccccccHHHHHHHHHHHHHHHHhCCCCcCC
Confidence            553211 2  7899999999999999999988655434454

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.72  E-value=2.3e-18  Score=185.83  Aligned_cols=161  Identities=15%  Similarity=0.117  Sum_probs=115.0

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCCCCeeeCCccc-CCceeEEEEeCCCCCcchhhhHHhhccCCEEE
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFY-PDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il   87 (643)
                      ++..+|+|+|++|+|||||+++|++..+... .++++... ....+. ..+..+.||||||++.+..++..+++.+|++|
T Consensus         2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i-~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vI   80 (537)
T 3izy_P            2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHI-GAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVI   80 (537)
T ss_dssp             CCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCT-TSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSCE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEE-eEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEEE
Confidence            3457899999999999999999998765433 23322111 111222 24568999999999999999989999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhH---HHHhhcccceEEEeCcccCCCh
Q 006490           88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGP---IMQQFREIETCVECSATTMIQV  164 (643)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~Sa~~~~gi  164 (643)
                      +|+|+++....+...  ++..+...  ++|+++|+||+|+...... .....+..   ....++...+++++||++|.|+
T Consensus        81 LVVDa~dg~~~qt~e--~l~~~~~~--~vPiIVViNKiDl~~~~~~-~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI  155 (537)
T 3izy_P           81 LVVAADDGVMKQTVE--SIQHAKDA--HVPIVLAINKCDKAEADPE-KVKKELLAYDVVCEDYGGDVQAVHVSALTGENM  155 (537)
T ss_dssp             EECBSSSCCCHHHHH--HHHHHHTT--TCCEEECCBSGGGTTTSCC-SSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSS
T ss_pred             EEEECCCCccHHHHH--HHHHHHHc--CCcEEEEEecccccccchH-HHHHHHHhhhhhHHhcCCCceEEEEECCCCCCc
Confidence            999999877665543  45555555  7899999999998754322 11111111   1122222247899999999999


Q ss_pred             hHHHHHHHHHHh
Q 006490          165 PDVFYYAQKAVL  176 (643)
Q Consensus       165 ~~l~~~i~~~~~  176 (643)
                      +++++.+...+.
T Consensus       156 ~eLle~I~~l~~  167 (537)
T 3izy_P          156 MALAEATIALAE  167 (537)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             hhHHHHHHHhhh
Confidence            999999988764

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.72  E-value=4.9e-18  Score=178.85  Aligned_cols=159  Identities=13%  Similarity=0.117  Sum_probs=115.3

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCcEEEEEEecCCchhhhhh-----hccHHh
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKI-----LSNKEA  494 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~-~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~-----~~~~~~  494 (643)
                      ...++|+|+|.+|+|||||+|+|++..+..++. ++++.+.....+... +...+.+|||+|.+.+..+     .++..+
T Consensus        32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~-~~~~l~liDTpG~~d~~~l~~~~~~~~~~~  110 (423)
T 3qq5_A           32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELH-PIGPVTLVDTPGLDDVGELGRLRVEKARRV  110 (423)
T ss_dssp             CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEET-TTEEEEEEECSSTTCCCTTCCCCHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEEC-CCCeEEEEECcCCCcccchhHHHHHHHHHH
Confidence            456899999999999999999999998754443 433444445555555 3447889999998765432     224668


Q ss_pred             hccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeecc
Q 006490          495 LASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKS  574 (643)
Q Consensus       495 ~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~  574 (643)
                      +..+|++|+|+|++..   .....|+..+.+.      ++|+++|+||+|+...... +..+++++.++++ ++++||++
T Consensus       111 l~~aD~vllVvD~~~~---~~~~~~l~~l~~~------~~piIvV~NK~Dl~~~~~~-~~~~~l~~~~g~~-v~~vSAkt  179 (423)
T 3qq5_A          111 FYRADCGILVTDSAPT---PYEDDVVNLFKEM------EIPFVVVVNKIDVLGEKAE-ELKGLYESRYEAK-VLLVSALQ  179 (423)
T ss_dssp             HTSCSEEEEECSSSCC---HHHHHHHHHHHHT------TCCEEEECCCCTTTTCCCT-HHHHHSSCCTTCC-CCCCSSCC
T ss_pred             HhcCCEEEEEEeCCCh---HHHHHHHHHHHhc------CCCEEEEEeCcCCCCccHH-HHHHHHHHHcCCC-EEEEECCC
Confidence            8999999999999433   3456677777766      7999999999999875443 5566666777775 99999999


Q ss_pred             C-CHHHHHHHHHHHHhCC
Q 006490          575 K-DLNNVFSRIIWAAEHP  591 (643)
Q Consensus       575 g-~i~~l~~~l~~~~~~~  591 (643)
                      | |++++|+.|.+.+...
T Consensus       180 g~gI~eL~~~L~~~l~~~  197 (423)
T 3qq5_A          180 KKGFDDIGKTISEILPGD  197 (423)
T ss_dssp             TTSTTTHHHHHHHHSCCC
T ss_pred             CCCHHHHHHHHHHhhhhh
Confidence            9 9999999999998544

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.72  E-value=4.3e-17  Score=169.78  Aligned_cols=159  Identities=17%  Similarity=0.141  Sum_probs=111.7

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcch---------hhhHHh
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATESVP-EKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENK---------GKLNEE   79 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---------~~~~~~   79 (643)
                      ...++|+++|.+|||||||+|+|++..+. ...+.++.... ...+...+..+.+|||||+....         ......
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~  243 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGIN-VGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILAL  243 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEE-EEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeecee-EEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHH
Confidence            45689999999999999999999988742 22333222221 12233346789999999986431         111234


Q ss_pred             hccCCEEEEEEECCCcc--cHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeC
Q 006490           80 LKRADAVVLTYACNQQS--TLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECS  157 (643)
Q Consensus        80 ~~~ad~il~v~d~~~~~--s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  157 (643)
                      ...+|++|+|+|+++..  +++... .|+..+.....++|+++|+||+|+......    +....+....+  .++++||
T Consensus       244 ~~~ad~illV~D~s~~~~~~~~~~~-~~~~~i~~~~~~~piilV~NK~Dl~~~~~~----~~~~~~~~~~~--~~~~~iS  316 (357)
T 2e87_A          244 RYLGNLIIYIFDPSEHCGFPLEEQI-HLFEEVHGEFKDLPFLVVINKIDVADEENI----KRLEKFVKEKG--LNPIKIS  316 (357)
T ss_dssp             GGTCSEEEEEECTTCTTSSCHHHHH-HHHHHHHHHTTTSCEEEEECCTTTCCHHHH----HHHHHHHHHTT--CCCEECB
T ss_pred             HhcCCEEEEEEeCCccccCCHHHHH-HHHHHHHHhcCCCCEEEEEECcccCChHHH----HHHHHHHHhcC--CCeEEEe
Confidence            45699999999998876  667665 588888765448999999999999753211    12233333333  3689999


Q ss_pred             cccCCChhHHHHHHHHHHh
Q 006490          158 ATTMIQVPDVFYYAQKAVL  176 (643)
Q Consensus       158 a~~~~gi~~l~~~i~~~~~  176 (643)
                      |++|.|++++++++.+.+.
T Consensus       317 A~~g~gi~~l~~~i~~~l~  335 (357)
T 2e87_A          317 ALKGTGIDLVKEEIIKTLR  335 (357)
T ss_dssp             TTTTBTHHHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHHH
Confidence            9999999999999988763

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.72  E-value=1.3e-16  Score=168.89  Aligned_cols=165  Identities=18%  Similarity=0.204  Sum_probs=114.9

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC--C-Ccc--------cceE----EEEEEc---CCCcEEEEEEecCCc
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYA--P-TTG--------EQYA----VNVVDQ---PGGNKKTLILQEIPE  482 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~--~-t~~--------~~~~----~~~v~~---~g~~~~~~i~d~~g~  482 (643)
                      ...++|+++|.+|+|||||+|+|++........  . +..        ..+.    ......   .+....+.+|||+|+
T Consensus         6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh   85 (403)
T 3sjy_A            6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGH   85 (403)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCc
Confidence            456899999999999999999999864332110  0 000        0000    000000   011257789999999


Q ss_pred             hhhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHh
Q 006490          483 EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQEL  562 (643)
Q Consensus       483 ~~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~  562 (643)
                      +.+...  +...+..+|++++|+|++++.++.+..+++..+....     ..|+++|+||+|+.+.....+..+++.+.+
T Consensus        86 ~~~~~~--~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~-----~~~iivviNK~Dl~~~~~~~~~~~~i~~~l  158 (403)
T 3sjy_A           86 EVLMAT--MLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG-----VKNLIIVQNKVDVVSKEEALSQYRQIKQFT  158 (403)
T ss_dssp             GGGHHH--HHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT-----CCCEEEEEECGGGSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHH--HHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC-----CCCEEEEEECccccchHHHHHHHHHHHHHH
Confidence            888776  6788899999999999999876677777777665542     358999999999987544333333444333


Q ss_pred             ---C--CCCcEEeeeccC-CHHHHHHHHHHHHhCCC
Q 006490          563 ---G--IEPPIPVSMKSK-DLNNVFSRIIWAAEHPH  592 (643)
Q Consensus       563 ---~--~~~~~~vSa~~g-~i~~l~~~l~~~~~~~~  592 (643)
                         +  ..+++++||++| |++++++.|.+.+..+.
T Consensus       159 ~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~~  194 (403)
T 3sjy_A          159 KGTWAENVPIIPVSALHKINIDSLIEGIEEYIKTPY  194 (403)
T ss_dssp             TTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred             HhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCCCC
Confidence               2  225999999999 99999999998775443

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.71  E-value=7.1e-17  Score=170.94  Aligned_cols=166  Identities=16%  Similarity=0.119  Sum_probs=114.9

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCC--CC----------CCCCeeeC---Cccc-----CCceeEEEEeCC
Q 006490            8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKV--PP----------VHAPTRLP---PDFY-----PDRVPVTIIDTS   67 (643)
Q Consensus         8 ~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~--~~----------~~~~~~~~---~~~~-----~~~~~~~i~Dt~   67 (643)
                      ...+.++|+++|++|+|||||+|+|++.......  ..          ........   ....     .....+.+||||
T Consensus         4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP   83 (403)
T 3sjy_A            4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP   83 (403)
T ss_dssp             CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred             ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECC
Confidence            4567799999999999999999999985422110  00          00000000   0001     112789999999


Q ss_pred             CCCcchhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhh
Q 006490           68 SSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF  147 (643)
Q Consensus        68 G~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~  147 (643)
                      |++.+...+...+..+|++|+|+|+++..+..... .|+..++... .+|+++|+||+|+......   .+..+++.+.+
T Consensus        84 Gh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~-~~~~~~~~~~-~~~iivviNK~Dl~~~~~~---~~~~~~i~~~l  158 (403)
T 3sjy_A           84 GHEVLMATMLSGAALMDGAILVVAANEPFPQPQTR-EHFVALGIIG-VKNLIIVQNKVDVVSKEEA---LSQYRQIKQFT  158 (403)
T ss_dssp             CCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHH-HHHHHHHHHT-CCCEEEEEECGGGSCHHHH---HHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHH-HHHHHHHHcC-CCCEEEEEECccccchHHH---HHHHHHHHHHH
Confidence            99999988889999999999999999887555555 3666666553 3599999999999754221   12222232222


Q ss_pred             c----ccceEEEeCcccCCChhHHHHHHHHHHhCC
Q 006490          148 R----EIETCVECSATTMIQVPDVFYYAQKAVLHP  178 (643)
Q Consensus       148 ~----~~~~~~~~Sa~~~~gi~~l~~~i~~~~~~~  178 (643)
                      .    ...+++++||++|.|+++|++.+.+.+..+
T Consensus       159 ~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~  193 (403)
T 3sjy_A          159 KGTWAENVPIIPVSALHKINIDSLIEGIEEYIKTP  193 (403)
T ss_dssp             TTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred             HhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCCC
Confidence            1    123699999999999999999998876544

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.71  E-value=2.1e-16  Score=164.61  Aligned_cols=161  Identities=19%  Similarity=0.190  Sum_probs=116.3

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhh-----h--hccHH
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK-----I--LSNKE  493 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~-----~--~~~~~  493 (643)
                      ...++|+++|.+|||||||+|+|++........+.++.......+...  ...+.+|||+|......     +  .....
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  242 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDG--YFRYQIIDTPGLLDRPISERNEIEKQAILA  242 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEET--TEEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEec--CceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence            456899999999999999999999987533333333333334444333  45678899999643210     0  00122


Q ss_pred             hhccCCEEEEEEeCCChh--hHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEee
Q 006490          494 ALASCDVTIFVYDSSDEY--SWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVS  571 (643)
Q Consensus       494 ~~~~ad~illv~D~s~~~--s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vS  571 (643)
                      ....+|++++|+|++++.  +++....|+..+.....    +.|+++|+||+|+...... +....+++..+++ +++||
T Consensus       243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~----~~piilV~NK~Dl~~~~~~-~~~~~~~~~~~~~-~~~iS  316 (357)
T 2e87_A          243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK----DLPFLVVINKIDVADEENI-KRLEKFVKEKGLN-PIKIS  316 (357)
T ss_dssp             GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT----TSCEEEEECCTTTCCHHHH-HHHHHHHHHTTCC-CEECB
T ss_pred             HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC----CCCEEEEEECcccCChHHH-HHHHHHHHhcCCC-eEEEe
Confidence            335699999999999876  67777888888877543    6899999999999874432 3344556666765 99999


Q ss_pred             eccC-CHHHHHHHHHHHHh
Q 006490          572 MKSK-DLNNVFSRIIWAAE  589 (643)
Q Consensus       572 a~~g-~i~~l~~~l~~~~~  589 (643)
                      |++| |+++++++|.+.+.
T Consensus       317 A~~g~gi~~l~~~i~~~l~  335 (357)
T 2e87_A          317 ALKGTGIDLVKEEIIKTLR  335 (357)
T ss_dssp             TTTTBTHHHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHHH
Confidence            9999 99999999999874

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.71  E-value=1.6e-17  Score=160.75  Aligned_cols=143  Identities=20%  Similarity=0.249  Sum_probs=101.6

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCCCC---CCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhcc
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSEN---YAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALAS  497 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~---~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~  497 (643)
                      ...++|+|+|++|||||||+|+|++..+...   +.+++...+         ....+.+||++|++.+...  ...+++.
T Consensus        10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~--~~~~~~~   78 (218)
T 1nrj_B           10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYK--LSDYLKT   78 (218)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHH--HHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHH--HHHHHHh
Confidence            4568999999999999999999999876542   334433322         3345778999999887665  5566665


Q ss_pred             ----CCEEEEEEeCC-ChhhHHHHHHHHHHHHHhcCC-CCCCCcEEEEEeCCCCCCcccc-------HHHHHHHHHHhCC
Q 006490          498 ----CDVTIFVYDSS-DEYSWKRTKELLVEVARLGED-SGYGVPCLLIASKDDLKPYTMA-------VQDSARVTQELGI  564 (643)
Q Consensus       498 ----ad~illv~D~s-~~~s~~~~~~~~~~i~~~~~~-~~~~~pvilv~NK~Dl~~~~~~-------~~~~~~~~~~~~~  564 (643)
                          +|++++|+|++ ++.++.....|+..+...... ...++|+++|+||+|+......       .+.+..++...+.
T Consensus        79 ~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~  158 (218)
T 1nrj_B           79 RAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKK  158 (218)
T ss_dssp             HGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhc
Confidence                99999999999 888889888888877654211 0017999999999999875432       3445666666666


Q ss_pred             CCcEEeeeccC
Q 006490          565 EPPIPVSMKSK  575 (643)
Q Consensus       565 ~~~~~vSa~~g  575 (643)
                      . ++++||++|
T Consensus       159 ~-~~~~Sa~~~  168 (218)
T 1nrj_B          159 S-LNEVERKIN  168 (218)
T ss_dssp             H-HHC------
T ss_pred             c-ccccccccc
Confidence            5 899999998

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.70  E-value=1.1e-16  Score=165.97  Aligned_cols=165  Identities=19%  Similarity=0.171  Sum_probs=108.1

Q ss_pred             ceEE-EEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchh------hhhhhccHHh
Q 006490          422 NVFR-CLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG------VKKILSNKEA  494 (643)
Q Consensus       422 ~~~k-i~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~------~~~~~~~~~~  494 (643)
                      ..++ |+|+|++|||||||+|+|++..+.....+.++.+.....+.++|  ..+.+|||+|.-.      .+.+..+...
T Consensus       177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl~~  254 (364)
T 2qtf_A          177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTLSE  254 (364)
T ss_dssp             --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHHHG
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHHHH
Confidence            3455 99999999999999999999876333333333334455566664  5677899999511      1222224567


Q ss_pred             hccCCEEEEEEeCCChh--hHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc--HHHHHHHHHHh-C-CCCcE
Q 006490          495 LASCDVTIFVYDSSDEY--SWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA--VQDSARVTQEL-G-IEPPI  568 (643)
Q Consensus       495 ~~~ad~illv~D~s~~~--s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~--~~~~~~~~~~~-~-~~~~~  568 (643)
                      +..||++++|+|++++.  .++....|...+......   +.|+++|+||+|+......  ......+++.+ . .++++
T Consensus       255 ~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~---~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~  331 (364)
T 2qtf_A          255 AKYSDALILVIDSTFSENLLIETLQSSFEILREIGVS---GKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVI  331 (364)
T ss_dssp             GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCC---SCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEE
T ss_pred             HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcC---CCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEE
Confidence            89999999999999876  555555555444443221   6899999999999764311  22333445555 2 12479


Q ss_pred             EeeeccC-CHHHHHHHHHHHHhCC
Q 006490          569 PVSMKSK-DLNNVFSRIIWAAEHP  591 (643)
Q Consensus       569 ~vSa~~g-~i~~l~~~l~~~~~~~  591 (643)
                      ++||++| |++++++.|.+.+..+
T Consensus       332 ~~SA~~g~gi~~L~~~I~~~l~~~  355 (364)
T 2qtf_A          332 PISALKRTNLELLRDKIYQLATQL  355 (364)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             EEECCCCcCHHHHHHHHHHHhccc
Confidence            9999999 9999999999977543

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.69  E-value=1.1e-16  Score=157.36  Aligned_cols=166  Identities=14%  Similarity=0.133  Sum_probs=104.3

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCC-CCCCeeeCCcccCCceeEEEEeCCCCCcc-----------hhh
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEK-VPP-VHAPTRLPPDFYPDRVPVTIIDTSSSLEN-----------KGK   75 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-----------~~~   75 (643)
                      ....+||+|+|++|||||||+|+|++..+... .++ ..+.......+...+..+.||||||+...           ...
T Consensus        26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~  105 (239)
T 3lxx_A           26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRC  105 (239)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHH
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHH
Confidence            34568999999999999999999999886443 221 11111122334456778999999997532           222


Q ss_pred             hHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhc---CCCCcEEEEEecccCCCCCccc----hhhhhhhHHHHhhc
Q 006490           76 LNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRL---EIKVPIIVAGCKLDLRGDHNAT----SLEEVMGPIMQQFR  148 (643)
Q Consensus        76 ~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~---~~~~pvilv~NK~D~~~~~~~~----~~~~~~~~~~~~~~  148 (643)
                      ...+++++|++|+|+|+++....+.   .|+..+...   ....|+++|+||+|+.......    ...+.++.+.+.++
T Consensus       106 ~~~~~~~~~~~l~v~d~~~~~~~~~---~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~  182 (239)
T 3lxx_A          106 ILLTSPGPHALLLVVPLGRYTEEEH---KATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFG  182 (239)
T ss_dssp             HHHTTTCCSEEEEEEETTCCSSHHH---HHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHHHS
T ss_pred             HHhcCCCCcEEEEEeeCCCCCHHHH---HHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcC
Confidence            3355678899999999876544222   244444321   1246999999999987653320    01235677778887


Q ss_pred             ccceEEEeCccc-----CCChhHHHHHHHHHHhCCC
Q 006490          149 EIETCVECSATT-----MIQVPDVFYYAQKAVLHPT  179 (643)
Q Consensus       149 ~~~~~~~~Sa~~-----~~gi~~l~~~i~~~~~~~~  179 (643)
                      .  .++.+++..     +.++.+|++.+.+.+....
T Consensus       183 ~--~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~~  216 (239)
T 3lxx_A          183 D--RYCALNNKATGAEQEAQRAQLLGLIQRVVRENK  216 (239)
T ss_dssp             S--SEEECCTTCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             C--EEEEEECCCCccccHHHHHHHHHHHHHHHHHcC
Confidence            5  466666553     3789999998887765433

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.69  E-value=8.4e-17  Score=173.55  Aligned_cols=164  Identities=16%  Similarity=0.146  Sum_probs=111.3

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHhcCC----C---CCC-CCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHh
Q 006490            8 SSRTGVRVVVVGDRGTGKSSLIAAAATES----V---PEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEE   79 (643)
Q Consensus         8 ~~~~~~kI~lvG~~~vGKSsL~n~l~~~~----~---~~~-~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~   79 (643)
                      ..++.++|+++|++++|||||+++|++..    .   ... .++++ .......+..++..+.+|||||++++...+...
T Consensus        15 ~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiT-i~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~   93 (482)
T 1wb1_A           15 MDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGIT-IDIGFSAFKLENYRITLVDAPGHADLIRAVVSA   93 (482)
T ss_dssp             CCCEEEEEEEEECTTSSHHHHHHHHHTTC---------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHH
T ss_pred             hcCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccE-EecceEEEEECCEEEEEEECCChHHHHHHHHHH
Confidence            34567899999999999999999999876    1   111 11111 000112233456899999999998888888889


Q ss_pred             hccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhh-cc-cceEEEeC
Q 006490           80 LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF-RE-IETCVECS  157 (643)
Q Consensus        80 ~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~S  157 (643)
                      +..+|++|+|+|+++....+..  .++..++..  ++|+|+|+||+|+..........+.+..+.... +. ..+++++|
T Consensus        94 ~~~aD~~ilVvda~~g~~~qt~--e~l~~~~~~--~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vS  169 (482)
T 1wb1_A           94 ADIIDLALIVVDAKEGPKTQTG--EHMLILDHF--NIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPIS  169 (482)
T ss_dssp             TTSCCEEEEEEETTTCSCHHHH--HHHHHHHHT--TCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECC
T ss_pred             HhhCCEEEEEEecCCCccHHHH--HHHHHHHHc--CCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEEE
Confidence            9999999999999874332222  234445555  789999999999975321101122333333332 10 24799999


Q ss_pred             cccCCChhHHHHHHHHHHh
Q 006490          158 ATTMIQVPDVFYYAQKAVL  176 (643)
Q Consensus       158 a~~~~gi~~l~~~i~~~~~  176 (643)
                      |++|.|+++|++.+.+.+.
T Consensus       170 A~~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          170 AKTGFGVDELKNLIITTLN  188 (482)
T ss_dssp             TTTCTTHHHHHHHHHHHHH
T ss_pred             CcCCCCHHHHHHHHHHhhc
Confidence            9999999999999998764

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.69  E-value=1.1e-16  Score=165.99  Aligned_cols=166  Identities=15%  Similarity=0.121  Sum_probs=104.5

Q ss_pred             CCccE-EEEEcCCCCCHHHHHHHHhcCCCC-CCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcc--hh------hhHHh
Q 006490           10 RTGVR-VVVVGDRGTGKSSLIAAAATESVP-EKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLEN--KG------KLNEE   79 (643)
Q Consensus        10 ~~~~k-I~lvG~~~vGKSsL~n~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~--~~------~~~~~   79 (643)
                      +..++ |+|+|++|||||||+|+|++..+. .+.++++... ....+...+..+.+|||+|+...  ..      .+-..
T Consensus       176 ~~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~-~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~~  254 (364)
T 2qtf_A          176 RNNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSP-KRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLSE  254 (364)
T ss_dssp             ---CCEEEEECBTTSSHHHHHHHHHCC-----------CCS-CEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHHG
T ss_pred             hcCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCC-EEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHHH
Confidence            34566 999999999999999999998742 2233222111 11233334578999999996321  11      11235


Q ss_pred             hccCCEEEEEEECCCcc--cHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhh-cccceEEE
Q 006490           80 LKRADAVVLTYACNQQS--TLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF-REIETCVE  155 (643)
Q Consensus        80 ~~~ad~il~v~d~~~~~--s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  155 (643)
                      +..+|++++|+|++++.  ..+.+. .|.+.+...+ .++|+++|+||+|+...... ........+...+ ....++++
T Consensus       255 ~~~aD~il~VvD~s~~~~~~~~~~~-~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~-~~~~~~~~l~~~l~~~~~~~~~  332 (364)
T 2qtf_A          255 AKYSDALILVIDSTFSENLLIETLQ-SSFEILREIGVSGKPILVTLNKIDKINGDLY-KKLDLVEKLSKELYSPIFDVIP  332 (364)
T ss_dssp             GGGSSEEEEEEETTSCHHHHHHHHH-HHHHHHHHHTCCSCCEEEEEECGGGCCSCHH-HHHHHHHHHHHHHCSCEEEEEE
T ss_pred             HHhCCEEEEEEECCCCcchHHHHHH-HHHHHHHHhCcCCCCEEEEEECCCCCCchHH-HHHHHHHHHHHHhcCCCCcEEE
Confidence            78999999999998876  444443 4666666543 47899999999998753211 1111222233444 21125799


Q ss_pred             eCcccCCChhHHHHHHHHHHhCC
Q 006490          156 CSATTMIQVPDVFYYAQKAVLHP  178 (643)
Q Consensus       156 ~Sa~~~~gi~~l~~~i~~~~~~~  178 (643)
                      +||++|.|++++++.+.+.+..+
T Consensus       333 ~SA~~g~gi~~L~~~I~~~l~~~  355 (364)
T 2qtf_A          333 ISALKRTNLELLRDKIYQLATQL  355 (364)
T ss_dssp             CBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             EECCCCcCHHHHHHHHHHHhccc
Confidence            99999999999999998876543

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.67  E-value=1e-16  Score=174.06  Aligned_cols=115  Identities=12%  Similarity=0.105  Sum_probs=86.0

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCCCC-----------------C------CCCCCCCeeeCCcccCCceeEEEEeCC
Q 006490           11 TGVRVVVVGDRGTGKSSLIAAAATESVPE-----------------K------VPPVHAPTRLPPDFYPDRVPVTIIDTS   67 (643)
Q Consensus        11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~~~-----------------~------~~~~~~~~~~~~~~~~~~~~~~i~Dt~   67 (643)
                      +..+|+|+|++|||||||+|+|+......                 +      .+++. .......+...++.++|||||
T Consensus        12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiT-i~~~~~~~~~~~~~i~liDTP   90 (528)
T 3tr5_A           12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGIS-VTTSVMQFPYKDYLINLLDTP   90 (528)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCS-SSSSEEEEEETTEEEEEECCC
T ss_pred             cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCee-EEEeEEEEEeCCEEEEEEECC
Confidence            34689999999999999999997221100                 0      01100 111222344567899999999


Q ss_pred             CCCcchhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCC
Q 006490           68 SSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD  130 (643)
Q Consensus        68 G~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~  130 (643)
                      |+.++...+..+++.+|++|+|+|+++..+.....  ++..+...  ++|+++|+||+|+...
T Consensus        91 G~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~--~~~~~~~~--~iPiivviNK~Dl~~~  149 (528)
T 3tr5_A           91 GHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIK--LMEVCRLR--HTPIMTFINKMDRDTR  149 (528)
T ss_dssp             CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHH--HHHHHHTT--TCCEEEEEECTTSCCS
T ss_pred             CchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH--HHHHHHHc--CCCEEEEEeCCCCccc
Confidence            99999999999999999999999999887776654  55566665  7999999999999654

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.67  E-value=3.9e-17  Score=165.69  Aligned_cols=132  Identities=10%  Similarity=0.045  Sum_probs=99.5

Q ss_pred             HHHHHHhcCCCC-CCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECCCcc-cHHHHHHH
Q 006490           27 SLIAAAATESVP-EKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQS-TLSRLSSY  104 (643)
Q Consensus        27 sL~n~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~~~-s~~~~~~~  104 (643)
                      +|+++++.+.|. ..+.++.+.... ..+..++ .+.+|||  ++++..+++.+++++|++|+|||++++. +++.+. +
T Consensus        32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~-~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~-~  106 (301)
T 1u0l_A           32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG-SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID-K  106 (301)
T ss_dssp             CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS-SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH-H
T ss_pred             cEEEEEEcccccccCCCCCCccEEE-EEEcCCC-eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH-H
Confidence            688888888887 665555554332 2232333 7999999  8889999999999999999999999987 677766 6


Q ss_pred             HHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHHH
Q 006490          105 WLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY  169 (643)
Q Consensus       105 ~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  169 (643)
                      |+..++..  ++|++||+||+|+.....+    +....+.+.+....++++|||++|.||+++|.
T Consensus       107 ~l~~~~~~--~~piilv~NK~DL~~~~~v----~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~  165 (301)
T 1u0l_A          107 FLVLAEKN--ELETVMVINKMDLYDEDDL----RKVRELEEIYSGLYPIVKTSAKTGMGIEELKE  165 (301)
T ss_dssp             HHHHHHHT--TCEEEEEECCGGGCCHHHH----HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHH
T ss_pred             HHHHHHHC--CCCEEEEEeHHHcCCchhH----HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHH
Confidence            98888764  8999999999999753211    22345555554224699999999999999886

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.67  E-value=3.8e-17  Score=174.94  Aligned_cols=158  Identities=16%  Similarity=0.169  Sum_probs=108.2

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEE
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (643)
                      ++..+|+++|++++|||||+++|.+..+... .++++.. .....+..++..++||||||++.|...+...+..+|++|+
T Consensus         2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~-i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aIL   80 (501)
T 1zo1_I            2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQH-IGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVL   80 (501)
T ss_dssp             CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCC-SSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEe-EEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEE
Confidence            3456899999999999999999987654332 2221111 1112344456789999999999998888888999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhh---hHHHHhhcccceEEEeCcccCCChh
Q 006490           89 TYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVM---GPIMQQFREIETCVECSATTMIQVP  165 (643)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~Sa~~~~gi~  165 (643)
                      |+|+++....+...  .+..+...  ++|+|+|+||+|+...+.. .....+   ..+...++...+++++||++|.|++
T Consensus        81 VVda~~g~~~qT~e--~l~~~~~~--~vPiIVviNKiDl~~~~~~-~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~  155 (501)
T 1zo1_I           81 VVAADDGVMPQTIE--AIQHAKAA--QVPVVVAVNKIDKPEADPD-RVKNELSQYGILPEEWGGESQFVHVSAKAGTGID  155 (501)
T ss_dssp             EEETTTBSCTTTHH--HHHHHHHT--TCCEEEEEECSSSSTTCCC-CTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCT
T ss_pred             EeecccCccHHHHH--HHHHHHhc--CceEEEEEEeccccccCHH-HHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcc
Confidence            99998853322221  33344444  7899999999999753211 111110   1112233333479999999999999


Q ss_pred             HHHHHHHH
Q 006490          166 DVFYYAQK  173 (643)
Q Consensus       166 ~l~~~i~~  173 (643)
                      ++++.+..
T Consensus       156 eLle~I~~  163 (501)
T 1zo1_I          156 ELLDAILL  163 (501)
T ss_dssp             THHHHTTT
T ss_pred             hhhhhhhh
Confidence            99998764

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.67  E-value=2.7e-16  Score=167.78  Aligned_cols=161  Identities=17%  Similarity=0.126  Sum_probs=106.0

Q ss_pred             CCCCCccEEEEEcCCCCCHHHHHHHHhcCC--CCCCC------------------------CC---CCCCee--eCCccc
Q 006490            7 SSSRTGVRVVVVGDRGTGKSSLIAAAATES--VPEKV------------------------PP---VHAPTR--LPPDFY   55 (643)
Q Consensus         7 ~~~~~~~kI~lvG~~~vGKSsL~n~l~~~~--~~~~~------------------------~~---~~~~~~--~~~~~~   55 (643)
                      ...+..++|+++|++|+|||||+++|+...  +....                        ..   ..+.+.  ....+.
T Consensus        12 ~~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~   91 (439)
T 3j2k_7           12 APKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFE   91 (439)
T ss_pred             CCCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEe
Confidence            345677999999999999999999996653  11100                        00   001111  222344


Q ss_pred             CCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECCCccc---HH--HHHHHHHHHHHhcCCCCc-EEEEEecccCCC
Q 006490           56 PDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQST---LS--RLSSYWLPELRRLEIKVP-IIVAGCKLDLRG  129 (643)
Q Consensus        56 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~~~s---~~--~~~~~~~~~l~~~~~~~p-vilv~NK~D~~~  129 (643)
                      ..+..+.||||||++++...+..+++.+|++|+|+|+++...   ++  ....+.+..+...  ++| +|+|+||+|+..
T Consensus        92 ~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~--~v~~iIvviNK~Dl~~  169 (439)
T 3j2k_7           92 TEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTA--GVKHLIVLINKMDDPT  169 (439)
T ss_pred             cCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHc--CCCeEEEEeecCCCcc
Confidence            567899999999999998888899999999999999987642   11  1111233344444  677 999999999864


Q ss_pred             CCc--c--chhhhhhhHHHHhhcc----cceEEEeCcccCCChhHHHH
Q 006490          130 DHN--A--TSLEEVMGPIMQQFRE----IETCVECSATTMIQVPDVFY  169 (643)
Q Consensus       130 ~~~--~--~~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~gi~~l~~  169 (643)
                      ...  .  ....+.+..+.+.++.    ..+++++||++|.|+.++.+
T Consensus       170 ~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          170 VNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence            211  0  0112233344444442    23689999999999999665

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.67  E-value=2.6e-16  Score=149.03  Aligned_cols=119  Identities=20%  Similarity=0.269  Sum_probs=86.5

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhcc----CC
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKR----AD   84 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~----ad   84 (643)
                      ....++|+|+|++|||||||+|+|++..+....+.......    ....++.+.+|||||+..+...+..++..    +|
T Consensus        45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~  120 (193)
T 2ged_A           45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA----ADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVK  120 (193)
T ss_dssp             -CCCCEEEEECCTTSSHHHHHHHHHHSSCC----------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGGGEE
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCcee----eeecCCeEEEEECCCCchHHHHHHHHHHhhcccCC
Confidence            35678999999999999999999999876442211111111    12256789999999999887777777665    89


Q ss_pred             EEEEEEECC-CcccHHHHHHHHHHHHH-h----cCCCCcEEEEEecccCCCCCc
Q 006490           85 AVVLTYACN-QQSTLSRLSSYWLPELR-R----LEIKVPIIVAGCKLDLRGDHN  132 (643)
Q Consensus        85 ~il~v~d~~-~~~s~~~~~~~~~~~l~-~----~~~~~pvilv~NK~D~~~~~~  132 (643)
                      ++|+|||++ +..++..+.. |+..+. .    ...++|+++|+||+|+.....
T Consensus       121 ~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~  173 (193)
T 2ged_A          121 GLIFMVDSTVDPKKLTTTAE-FLVDILSITESSCENGIDILIACNKSELFTARP  173 (193)
T ss_dssp             EEEEEEETTCCHHHHHHHHH-HHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred             EEEEEEECCCCchhHHHHHH-HHHHHHhhhhhccccCCCEEEEEEchHhcCCCC
Confidence            999999999 8888888775 554443 2    235899999999999986543

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.67  E-value=4.5e-16  Score=158.32  Aligned_cols=161  Identities=15%  Similarity=0.102  Sum_probs=103.0

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCC----CC----------------------Ceee--C--C-----cc
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPV----HA----------------------PTRL--P--P-----DF   54 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~----~~----------------------~~~~--~--~-----~~   54 (643)
                      ....+|+|+|++|||||||+|+|++..+.+...+.    .+                      ++..  .  .     .+
T Consensus        24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i  103 (299)
T 2aka_B           24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  103 (299)
T ss_dssp             CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence            45679999999999999999999998864221110    00                      0000  0  0     00


Q ss_pred             -----------------cCCceeEEEEeCCCCCc-------------chhhhHHhhccCCEEE-EEEECCCcccHHHHHH
Q 006490           55 -----------------YPDRVPVTIIDTSSSLE-------------NKGKLNEELKRADAVV-LTYACNQQSTLSRLSS  103 (643)
Q Consensus        55 -----------------~~~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~ad~il-~v~d~~~~~s~~~~~~  103 (643)
                                       ......+.||||||+..             +......+++.++.++ +|+|+++..+..... 
T Consensus       104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~-  182 (299)
T 2aka_B          104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL-  182 (299)
T ss_dssp             CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH-
T ss_pred             cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHH-
Confidence                             01136899999999753             2344557888888766 799988765444432 


Q ss_pred             HHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhc-ccceEEEeCcccCCChhHHHHHHHHHH
Q 006490          104 YWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR-EIETCVECSATTMIQVPDVFYYAQKAV  175 (643)
Q Consensus       104 ~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi~~l~~~i~~~~  175 (643)
                      .|+..+...  +.|+++|+||+|+......  ..+.++.....+. ...+++++||++|.|++++++.+.+..
T Consensus       183 ~~~~~~~~~--~~~~i~V~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~  251 (299)
T 2aka_B          183 KIAKEVDPQ--GQRTIGVITKLDLMDEGTD--ARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAER  251 (299)
T ss_dssp             HHHHHHCTT--CSSEEEEEECGGGSCTTCC--CHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHH
T ss_pred             HHHHHhCCC--CCeEEEEEEccccCCCCch--HHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHH
Confidence            356666544  7899999999999764332  1111111000110 123578999999999999999988743

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.65  E-value=1.2e-15  Score=151.93  Aligned_cols=164  Identities=15%  Similarity=0.091  Sum_probs=104.7

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCC-CCC-cccceEEEEEEcCCCcEEEEEEecCCchhhhhh--------h-
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENY-APT-TGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKI--------L-  489 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~-~~t-~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~--------~-  489 (643)
                      ...++|+|+|.+|||||||+|+|++....... .++ ++.......+...  ...+.+|||+|.......        . 
T Consensus        20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~i~iiDTpG~~~~~~~~~~~~~~i~~   97 (260)
T 2xtp_A           20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWG--NREIVIIDTPDMFSWKDHCEALYKEVQR   97 (260)
T ss_dssp             -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEET--TEEEEEEECCGGGGSSCCCHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeC--CCEEEEEECcCCCCCCCCHHHHHHHHHH
Confidence            45689999999999999999999998744433 343 3333444444444  356788999997543211        0 


Q ss_pred             ccHHhhccCCEEEEEEeCCChhhH-HHHHHHHHHHHHhcCCCCCCCcEEEEEe-CCCCCCccccH-------HHHHHHHH
Q 006490          490 SNKEALASCDVTIFVYDSSDEYSW-KRTKELLVEVARLGEDSGYGVPCLLIAS-KDDLKPYTMAV-------QDSARVTQ  560 (643)
Q Consensus       490 ~~~~~~~~ad~illv~D~s~~~s~-~~~~~~~~~i~~~~~~~~~~~pvilv~N-K~Dl~~~~~~~-------~~~~~~~~  560 (643)
                      ....+++.+|++|+|+|+++.... ..+..++..+.....    +.|.++|+| |+|+.......       .....+.+
T Consensus        98 ~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~----~~~~i~vv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~  173 (260)
T 2xtp_A           98 CYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDA----MGHTIVLFTHKEDLNGGSLMDYMHDSDNKALSKLVA  173 (260)
T ss_dssp             HHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGG----GGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHH
T ss_pred             HHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCchh----hccEEEEEEcccccCCccHHHHHHhcchHHHHHHHH
Confidence            023467899999999999862221 122233333321111    356666666 99997532111       23444666


Q ss_pred             HhCCC----CcEEeeeccC-CHHHHHHHHHHHHhC
Q 006490          561 ELGIE----PPIPVSMKSK-DLNNVFSRIIWAAEH  590 (643)
Q Consensus       561 ~~~~~----~~~~vSa~~g-~i~~l~~~l~~~~~~  590 (643)
                      ..+..    ..+++||++| |++++|+.|.+.+..
T Consensus       174 ~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~  208 (260)
T 2xtp_A          174 ACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLME  208 (260)
T ss_dssp             HTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhCCeEEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence            65532    1278999999 999999999998753

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.65  E-value=1e-15  Score=165.09  Aligned_cols=157  Identities=15%  Similarity=0.187  Sum_probs=107.5

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCC-------CCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHh
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPF-------SENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEA  494 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~-------~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~  494 (643)
                      ..++|+++|.+|+|||||+++|++...       .....+.++.+.....+.++  ...+.+||++|++.+...  +...
T Consensus        18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~--~~~i~iiDtPGh~~~~~~--~~~~   93 (482)
T 1wb1_A           18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLE--NYRITLVDAPGHADLIRA--VVSA   93 (482)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEET--TEEEEECCCSSHHHHHHH--HHHH
T ss_pred             CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEEC--CEEEEEEECCChHHHHHH--HHHH
Confidence            468999999999999999999998761       11222222222222223334  367888999999887665  6778


Q ss_pred             hccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc---HHHHHHHHHHh-CC--CCcE
Q 006490          495 LASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA---VQDSARVTQEL-GI--EPPI  568 (643)
Q Consensus       495 ~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~---~~~~~~~~~~~-~~--~~~~  568 (643)
                      +..+|++++|+|++++.. .+..+.+..+...      ++|+++|+||+|+.+....   .++..++.+.. ++  .+++
T Consensus        94 ~~~aD~~ilVvda~~g~~-~qt~e~l~~~~~~------~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii  166 (482)
T 1wb1_A           94 ADIIDLALIVVDAKEGPK-TQTGEHMLILDHF------NIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSII  166 (482)
T ss_dssp             TTSCCEEEEEEETTTCSC-HHHHHHHHHHHHT------TCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEE
T ss_pred             HhhCCEEEEEEecCCCcc-HHHHHHHHHHHHc------CCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEE
Confidence            899999999999998532 2222333333333      7899999999999864322   34445555555 33  3599


Q ss_pred             EeeeccC-CHHHHHHHHHHHHh
Q 006490          569 PVSMKSK-DLNNVFSRIIWAAE  589 (643)
Q Consensus       569 ~vSa~~g-~i~~l~~~l~~~~~  589 (643)
                      ++||++| |++++++.|.+.+.
T Consensus       167 ~vSA~~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          167 PISAKTGFGVDELKNLIITTLN  188 (482)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEECcCCCCHHHHHHHHHHhhc
Confidence            9999999 99999999999775

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.65  E-value=1.2e-15  Score=162.92  Aligned_cols=153  Identities=13%  Similarity=0.131  Sum_probs=105.1

Q ss_pred             cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-------------------------------CCcccceEEEEEEcC
Q 006490          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-------------------------------PTTGEQYAVNVVDQP  468 (643)
Q Consensus       420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~-------------------------------~t~~~~~~~~~v~~~  468 (643)
                      .+..++|+++|.+|+|||||+|+|++........                               +.++.+.....+.++
T Consensus        14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~   93 (439)
T 3j2k_7           14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE   93 (439)
T ss_pred             CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence            4567899999999999999999997653221110                               122223333445554


Q ss_pred             CCcEEEEEEecCCchhhhhhhccHHhhccCCEEEEEEeCCChhh---H---HHHHHHHHHHHHhcCCCCCCCc-EEEEEe
Q 006490          469 GGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYS---W---KRTKELLVEVARLGEDSGYGVP-CLLIAS  541 (643)
Q Consensus       469 g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv~D~s~~~s---~---~~~~~~~~~i~~~~~~~~~~~p-vilv~N  541 (643)
                        ...+.+|||+|++.+...  +..++..||++|+|+|++++..   |   .+..+.+..+...      ++| +|+|+|
T Consensus        94 --~~~~~iiDTPGh~~f~~~--~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~------~v~~iIvviN  163 (439)
T 3j2k_7           94 --KKHFTILDAPGHKSFVPN--MIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTA------GVKHLIVLIN  163 (439)
T ss_pred             --CeEEEEEECCChHHHHHH--HHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHc------CCCeEEEEee
Confidence              357889999999988765  6778899999999999998642   1   1233333333333      677 999999


Q ss_pred             CCCCCCcc-------ccHHHHHHHHHHhCCC-----CcEEeeeccC-CHHHHHH
Q 006490          542 KDDLKPYT-------MAVQDSARVTQELGIE-----PPIPVSMKSK-DLNNVFS  582 (643)
Q Consensus       542 K~Dl~~~~-------~~~~~~~~~~~~~~~~-----~~~~vSa~~g-~i~~l~~  582 (643)
                      |+|+....       ...++...+.+.+++.     +++++||++| |++++.+
T Consensus       164 K~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          164 KMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             cCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence            99996421       1134555566667652     5899999999 9998655

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.65  E-value=4e-16  Score=168.95  Aligned_cols=156  Identities=19%  Similarity=0.149  Sum_probs=101.6

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCC--CCC------------------------C------CCCCCCCeeeCCcccCC
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATES--VPE------------------------K------VPPVHAPTRLPPDFYPD   57 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~--~~~------------------------~------~~~~~~~~~~~~~~~~~   57 (643)
                      ++.+||+++|++|+|||||+|+|++..  +..                        +      .+++. .......+...
T Consensus        31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiT-i~~~~~~~~~~  109 (483)
T 3p26_A           31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVT-VSICTSHFSTH  109 (483)
T ss_dssp             CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSS-CCCCEEEEECS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcc-eEeeeEEEecC
Confidence            456899999999999999999998652  100                        0      01110 00012234456


Q ss_pred             ceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECCCcccHHH-----HHHHHHHHHHhcCCCCcEEEEEecccCCCCCc
Q 006490           58 RVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSR-----LSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN  132 (643)
Q Consensus        58 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~-----~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~  132 (643)
                      +..+.||||||++++...+..+++.+|++|+|+|+++..+...     ...+.+..+.... ..|+|+|+||+|+...+.
T Consensus       110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~-~~~iIvviNK~Dl~~~~~  188 (483)
T 3p26_A          110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLG-IHNLIIAMNKMDNVDWSQ  188 (483)
T ss_dssp             SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTT-CCCEEEEEECGGGGTTCH
T ss_pred             CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcC-CCcEEEEEECcCcccchH
Confidence            7899999999999999999999999999999999988644321     1112333344431 357999999999976432


Q ss_pred             cchhhh---hhhHHHHhhcc---cceEEEeCcccCCChhHHH
Q 006490          133 ATSLEE---VMGPIMQQFRE---IETCVECSATTMIQVPDVF  168 (643)
Q Consensus       133 ~~~~~~---~~~~~~~~~~~---~~~~~~~Sa~~~~gi~~l~  168 (643)
                      . ..++   .+..+...++.   ..+++++||++|.|+.++.
T Consensus       189 ~-~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el~  229 (483)
T 3p26_A          189 Q-RFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIE  229 (483)
T ss_dssp             H-HHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSSC
T ss_pred             H-HHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccccC
Confidence            2 2222   22333333332   2368999999999998753

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.65  E-value=9.3e-18  Score=181.15  Aligned_cols=160  Identities=16%  Similarity=0.159  Sum_probs=114.9

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i  501 (643)
                      +.++|+|+|.+|+|||||+++|.+..+...+.++++.++....+.++ ....+.+|||+|++.+..+  +..++..+|++
T Consensus         3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~-~g~~i~~iDTPGhe~f~~~--~~~~~~~aD~v   79 (537)
T 3izy_P            3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLP-SGEKITFLDTPGHAAFSAM--RARGTQVTDIV   79 (537)
T ss_dssp             CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSS-CSSCCBCEECSSSCCTTTS--BBSSSBSBSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeC-CCCEEEEEECCChHHHHHH--HHHHHccCCEE
Confidence            35689999999999999999999887766666655544444445554 2336778999999988877  67788999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc--HHHHHHH---HHHhC-CCCcEEeeeccC
Q 006490          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA--VQDSARV---TQELG-IEPPIPVSMKSK  575 (643)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~--~~~~~~~---~~~~~-~~~~~~vSa~~g  575 (643)
                      ++|+|++++...+.. ..+..+...      ++|+++|+||+|+......  ......+   +..++ ..+++++||++|
T Consensus        80 ILVVDa~dg~~~qt~-e~l~~~~~~------~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG  152 (537)
T 3izy_P           80 ILVVAADDGVMKQTV-ESIQHAKDA------HVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTG  152 (537)
T ss_dssp             EEECBSSSCCCHHHH-HHHHHHHTT------TCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSS
T ss_pred             EEEEECCCCccHHHH-HHHHHHHHc------CCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCC
Confidence            999999997664443 333444433      7999999999999753211  1121111   11111 125899999999


Q ss_pred             -CHHHHHHHHHHHHhCC
Q 006490          576 -DLNNVFSRIIWAAEHP  591 (643)
Q Consensus       576 -~i~~l~~~l~~~~~~~  591 (643)
                       |++++++.+...+..+
T Consensus       153 ~GI~eLle~I~~l~~~~  169 (537)
T 3izy_P          153 ENMMALAEATIALAEML  169 (537)
T ss_dssp             CSSHHHHHHHHHHHTTC
T ss_pred             CCchhHHHHHHHhhhcc
Confidence             9999999999987643

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.64  E-value=2.6e-15  Score=164.19  Aligned_cols=161  Identities=18%  Similarity=0.205  Sum_probs=115.5

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCC-----------CC------CCcccceEEEEEEc-CCCcEEEEEEecCCch
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSEN-----------YA------PTTGEQYAVNVVDQ-PGGNKKTLILQEIPEE  483 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~-----------~~------~t~~~~~~~~~v~~-~g~~~~~~i~d~~g~~  483 (643)
                      +..+|+|+|.+|+|||||+++|+...-...           .+      .|.........+.. .|....+.+|||+|+.
T Consensus         5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~   84 (600)
T 2ywe_A            5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV   84 (600)
T ss_dssp             GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence            457899999999999999999986311100           00      01111111111222 3345678899999998


Q ss_pred             hhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhC
Q 006490          484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELG  563 (643)
Q Consensus       484 ~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~  563 (643)
                      .+...  ...++..||++|+|+|++++.+.+....|..... .      ++|+++|+||+|+.... ..+..+++.+.++
T Consensus        85 dF~~e--v~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~-~------~ipiIvviNKiDl~~a~-~~~v~~el~~~lg  154 (600)
T 2ywe_A           85 DFSYE--VSRALAACEGALLLIDASQGIEAQTVANFWKAVE-Q------DLVIIPVINKIDLPSAD-VDRVKKQIEEVLG  154 (600)
T ss_dssp             GGHHH--HHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH-T------TCEEEEEEECTTSTTCC-HHHHHHHHHHTSC
T ss_pred             hHHHH--HHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH-C------CCCEEEEEeccCccccC-HHHHHHHHHHhhC
Confidence            88765  6778899999999999999988777777765543 2      89999999999997643 2345566777777


Q ss_pred             CC--CcEEeeeccC-CHHHHHHHHHHHHhCCC
Q 006490          564 IE--PPIPVSMKSK-DLNNVFSRIIWAAEHPH  592 (643)
Q Consensus       564 ~~--~~~~vSa~~g-~i~~l~~~l~~~~~~~~  592 (643)
                      +.  +++++||++| |++++++++.+.+..|.
T Consensus       155 ~~~~~vi~vSAktg~GI~~Lle~I~~~lp~p~  186 (600)
T 2ywe_A          155 LDPEEAILASAKEGIGIEEILEAIVNRIPPPK  186 (600)
T ss_dssp             CCGGGCEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred             CCcccEEEEEeecCCCchHHHHHHHHhccccc
Confidence            74  4899999999 99999999999887554

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.64  E-value=4.7e-15  Score=157.18  Aligned_cols=163  Identities=17%  Similarity=0.150  Sum_probs=102.9

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCC--CcccceEEEEEEc-------------C--CC----cEEEEEE
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFS---ENYAP--TTGEQYAVNVVDQ-------------P--GG----NKKTLIL  477 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~---~~~~~--t~~~~~~~~~v~~-------------~--g~----~~~~~i~  477 (643)
                      ..++|+++|.+++|||||+++|++....   ....+  |....+....+..             +  |.    ...+.+|
T Consensus         7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii   86 (408)
T 1s0u_A            7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV   86 (408)
T ss_dssp             CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence            4689999999999999999999965422   22223  4444443332211             1  11    2578899


Q ss_pred             ecCCchhhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc---HHH
Q 006490          478 QEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA---VQD  554 (643)
Q Consensus       478 d~~g~~~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~---~~~  554 (643)
                      |++|++.+...  +...+..+|++++|+|++++....+..+.+..+... .    ..|+++|+||+|+......   .++
T Consensus        87 DtPGh~~f~~~--~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l-~----~~~iivv~NK~Dl~~~~~~~~~~~~  159 (408)
T 1s0u_A           87 DSPGHETLMAT--MLSGASLMDGAILVIAANEPCPQPQTKEHLMALEIL-G----IDKIIIVQNKIDLVDEKQAEENYEQ  159 (408)
T ss_dssp             ECSSHHHHHHH--HHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT-T----CCCEEEEEECTTSSCTTTTTTHHHH
T ss_pred             ECCCHHHHHHH--HHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHc-C----CCeEEEEEEccCCCCHHHHHHHHHH
Confidence            99999887664  566778899999999999653112222333333322 1    3589999999999865432   334


Q ss_pred             HHHHHHHhC--CCCcEEeeeccC-CHHHHHHHHHHHHhCC
Q 006490          555 SARVTQELG--IEPPIPVSMKSK-DLNNVFSRIIWAAEHP  591 (643)
Q Consensus       555 ~~~~~~~~~--~~~~~~vSa~~g-~i~~l~~~l~~~~~~~  591 (643)
                      +.++.+.+.  ..+++++||++| |++++++.|.+.+..+
T Consensus       160 i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~  199 (408)
T 1s0u_A          160 IKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPTP  199 (408)
T ss_dssp             HHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCCC
T ss_pred             HHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence            444444421  225999999999 9999999999877544

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.64  E-value=4.2e-16  Score=165.20  Aligned_cols=165  Identities=15%  Similarity=0.171  Sum_probs=113.4

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcC--------CCCCC--CCC-----CCCCee--eCCcccCCceeEEEEeCCCCCc
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATE--------SVPEK--VPP-----VHAPTR--LPPDFYPDRVPVTIIDTSSSLE   71 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~--------~~~~~--~~~-----~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~   71 (643)
                      .+..++|+++|++|+|||||+++|++.        .+...  ...     ..+.+.  ....+...+..+.||||||+++
T Consensus         8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~   87 (405)
T 2c78_A            8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD   87 (405)
T ss_dssp             -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred             CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence            456799999999999999999999873        11110  000     000111  1223445678899999999999


Q ss_pred             chhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCc-EEEEEecccCCCCCccc-hhhhhhhHHHHhhcc
Q 006490           72 NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVP-IIVAGCKLDLRGDHNAT-SLEEVMGPIMQQFRE  149 (643)
Q Consensus        72 ~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p-vilv~NK~D~~~~~~~~-~~~~~~~~~~~~~~~  149 (643)
                      +...+..++..+|++|+|+|+++....+..  +|+..++..  ++| +++|+||+|+..+.... ...+.+..+...++.
T Consensus        88 f~~~~~~~~~~aD~~ilVvda~~g~~~qt~--~~l~~~~~~--~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~  163 (405)
T 2c78_A           88 YIKNMITGAAQMDGAILVVSAADGPMPQTR--EHILLARQV--GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEF  163 (405)
T ss_dssp             GHHHHHHHHTTCSSEEEEEETTTCCCHHHH--HHHHHHHHT--TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcc
Confidence            988888999999999999999887654432  466777666  788 89999999997532110 112234455555542


Q ss_pred             ---cceEEEeCcccCCC------------------hhHHHHHHHHHHhC
Q 006490          150 ---IETCVECSATTMIQ------------------VPDVFYYAQKAVLH  177 (643)
Q Consensus       150 ---~~~~~~~Sa~~~~g------------------i~~l~~~i~~~~~~  177 (643)
                         ..+++++||++|.|                  +.+|++.+...+..
T Consensus       164 ~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~  212 (405)
T 2c78_A          164 PGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPT  212 (405)
T ss_dssp             CTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCC
T ss_pred             cccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCC
Confidence               24799999999987                  66777776665543

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.64  E-value=1.9e-15  Score=165.65  Aligned_cols=161  Identities=14%  Similarity=0.182  Sum_probs=113.5

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCC-------CCC----------CcccceEEEEEEc-CCCcEEEEEEecCCch
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSEN-------YAP----------TTGEQYAVNVVDQ-PGGNKKTLILQEIPEE  483 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~-------~~~----------t~~~~~~~~~v~~-~g~~~~~~i~d~~g~~  483 (643)
                      +..+|+|+|.+++|||||+++|+...-...       ...          |.........+.. .|....+.+|||+|+.
T Consensus         3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~   82 (599)
T 3cb4_D            3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV   82 (599)
T ss_dssp             TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence            356899999999999999999986321110       000          1111111111211 4445778899999998


Q ss_pred             hhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhC
Q 006490          484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELG  563 (643)
Q Consensus       484 ~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~  563 (643)
                      .+...  ...++..+|++|+|+|++++.+++....|..... .      ++|+++|+||+|+.... ..+..+++.+.++
T Consensus        83 dF~~e--v~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~-~------~ipiIvViNKiDl~~a~-~~~v~~ei~~~lg  152 (599)
T 3cb4_D           83 DFSYE--VSRSLAACEGALLVVDAGQGVEAQTLANCYTAME-M------DLEVVPVLNKIDLPAAD-PERVAEEIEDIVG  152 (599)
T ss_dssp             GGHHH--HHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH-T------TCEEEEEEECTTSTTCC-HHHHHHHHHHHTC
T ss_pred             HHHHH--HHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH-C------CCCEEEeeeccCccccc-HHHHHHHHHHHhC
Confidence            88766  6788999999999999999887777777765543 2      79999999999997643 3445667777777


Q ss_pred             CC--CcEEeeeccC-CHHHHHHHHHHHHhCCC
Q 006490          564 IE--PPIPVSMKSK-DLNNVFSRIIWAAEHPH  592 (643)
Q Consensus       564 ~~--~~~~vSa~~g-~i~~l~~~l~~~~~~~~  592 (643)
                      +.  +++++||++| |++++++.+.+.+..|.
T Consensus       153 ~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p~  184 (599)
T 3cb4_D          153 IDATDAVRCSAKTGVGVQDVLERLVRDIPPPE  184 (599)
T ss_dssp             CCCTTCEEECTTTCTTHHHHHHHHHHHSCCCC
T ss_pred             CCcceEEEeecccCCCchhHHHHHhhcCCCcc
Confidence            74  5899999999 99999999999887554

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.64  E-value=5.1e-15  Score=157.09  Aligned_cols=165  Identities=16%  Similarity=0.177  Sum_probs=109.1

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCC--CcccceEEEEEEc-------------C--CC----cEEEEE
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFS---ENYAP--TTGEQYAVNVVDQ-------------P--GG----NKKTLI  476 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~---~~~~~--t~~~~~~~~~v~~-------------~--g~----~~~~~i  476 (643)
                      +..++|+++|.+++|||||+++|++....   ....+  |....+....+..             +  |.    ...+.+
T Consensus         8 ~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i   87 (410)
T 1kk1_A            8 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF   87 (410)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEE
Confidence            45689999999999999999999965322   22223  4444443332211             1  11    257889


Q ss_pred             EecCCchhhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc---HH
Q 006490          477 LQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA---VQ  553 (643)
Q Consensus       477 ~d~~g~~~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~---~~  553 (643)
                      ||++|++.+...  ....+..+|++++|+|++++....+..+.+..+....     ..|+++|+||+|+......   .+
T Consensus        88 iDtPGh~~f~~~--~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~-----~~~iivviNK~Dl~~~~~~~~~~~  160 (410)
T 1kk1_A           88 IDAPGHEALMTT--MLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIG-----QKNIIIAQNKIELVDKEKALENYR  160 (410)
T ss_dssp             EECSSHHHHHHH--HHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHT-----CCCEEEEEECGGGSCHHHHHHHHH
T ss_pred             EECCChHHHHHH--HHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcC-----CCcEEEEEECccCCCHHHHHHHHH
Confidence            999999887664  5677789999999999996531122223222333221     3589999999999875432   22


Q ss_pred             HHHHHHHHh--CCCCcEEeeeccC-CHHHHHHHHHHHHhCCC
Q 006490          554 DSARVTQEL--GIEPPIPVSMKSK-DLNNVFSRIIWAAEHPH  592 (643)
Q Consensus       554 ~~~~~~~~~--~~~~~~~vSa~~g-~i~~l~~~l~~~~~~~~  592 (643)
                      ++.++.+..  ...+++++||++| |+++++++|.+.+..+.
T Consensus       161 ~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~p~  202 (410)
T 1kk1_A          161 QIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPTPK  202 (410)
T ss_dssp             HHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred             HHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCCCc
Confidence            333333331  1235999999999 99999999998775443

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.64  E-value=1.6e-15  Score=160.87  Aligned_cols=167  Identities=19%  Similarity=0.133  Sum_probs=100.7

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCC---CCCC-CCCCCC-CeeeCCc---------c------c--C----CceeEE
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATES---VPEK-VPPVHA-PTRLPPD---------F------Y--P----DRVPVT   62 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~---~~~~-~~~~~~-~~~~~~~---------~------~--~----~~~~~~   62 (643)
                      ..+.++|+++|++++|||||+++|++..   +... .++.+- .......         +      .  .    ....+.
T Consensus         5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~   84 (408)
T 1s0u_A            5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS   84 (408)
T ss_dssp             CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred             cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence            4567999999999999999999999643   2222 121111 1000000         0      1  1    126899


Q ss_pred             EEeCCCCCcchhhhHHhhccCCEEEEEEECCCcc-cHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhh
Q 006490           63 IIDTSSSLENKGKLNEELKRADAVVLTYACNQQS-TLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMG  141 (643)
Q Consensus        63 i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~~~-s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~  141 (643)
                      ||||||++.+...+...+..+|++|+|+|+++.. ..+..  ..+..++... ..|+++|+||+|+..........+.+.
T Consensus        85 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~--e~l~~~~~l~-~~~iivv~NK~Dl~~~~~~~~~~~~i~  161 (408)
T 1s0u_A           85 FVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTK--EHLMALEILG-IDKIIIVQNKIDLVDEKQAEENYEQIK  161 (408)
T ss_dssp             EEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHH--HHHHHHHHTT-CCCEEEEEECTTSSCTTTTTTHHHHHH
T ss_pred             EEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhH--HHHHHHHHcC-CCeEEEEEEccCCCCHHHHHHHHHHHH
Confidence            9999998887776667778889999999998653 22221  1223334332 358999999999976543211222333


Q ss_pred             HHHHhh-cccceEEEeCcccCCChhHHHHHHHHHHhCC
Q 006490          142 PIMQQF-REIETCVECSATTMIQVPDVFYYAQKAVLHP  178 (643)
Q Consensus       142 ~~~~~~-~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~~~  178 (643)
                      .+..++ ....+++++||++|.|+++|++.+.+.+..+
T Consensus       162 ~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~  199 (408)
T 1s0u_A          162 EFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPTP  199 (408)
T ss_dssp             HHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCCC
T ss_pred             HHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence            443332 1224799999999999999999998876544

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.64  E-value=9.7e-16  Score=150.44  Aligned_cols=163  Identities=13%  Similarity=0.069  Sum_probs=104.4

Q ss_pred             cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC--CcccceEEEEEEcCCCcEEEEEEecCCch-----------hhh
Q 006490          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAP--TTGEQYAVNVVDQPGGNKKTLILQEIPEE-----------GVK  486 (643)
Q Consensus       420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~--t~~~~~~~~~v~~~g~~~~~~i~d~~g~~-----------~~~  486 (643)
                      ....++|+|+|++|||||||+|+|++..+.....+  +++.......+...  ...+.+|||+|..           .+.
T Consensus        26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--~~~i~liDTpG~~~~~~~~~~~~~~~~  103 (239)
T 3lxx_A           26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWK--ETELVVVDTPGIFDTEVPNAETSKEII  103 (239)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEET--TEEEEEEECCSCC-----CHHHHHHHH
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeC--CceEEEEECCCccCCCCCHHHHHHHHH
Confidence            34579999999999999999999999887655544  34444444445554  3567889999932           222


Q ss_pred             hhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccH-------HHHHHHH
Q 006490          487 KILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAV-------QDSARVT  559 (643)
Q Consensus       487 ~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~-------~~~~~~~  559 (643)
                      ..  ...++..+|++|+|+|+++...  ....++..+....... ...|+++|+||+|+.......       +.++.+.
T Consensus       104 ~~--~~~~~~~~~~~l~v~d~~~~~~--~~~~~l~~~~~~~~~~-~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~  178 (239)
T 3lxx_A          104 RC--ILLTSPGPHALLLVVPLGRYTE--EEHKATEKILKMFGER-ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLM  178 (239)
T ss_dssp             HH--HHHTTTCCSEEEEEEETTCCSS--HHHHHHHHHHHHHHHH-HGGGEEEEEECGGGC------------CHHHHHHH
T ss_pred             HH--HHhcCCCCcEEEEEeeCCCCCH--HHHHHHHHHHHHhhhh-ccceEEEEEeCCccCCcccHHHHHHhchHHHHHHH
Confidence            22  3445678899999999986433  1233333332211100 056999999999987644332       4577788


Q ss_pred             HHhCCCCcEEeeec-----cC-CHHHHHHHHHHHHhC
Q 006490          560 QELGIEPPIPVSMK-----SK-DLNNVFSRIIWAAEH  590 (643)
Q Consensus       560 ~~~~~~~~~~vSa~-----~g-~i~~l~~~l~~~~~~  590 (643)
                      +..+.. ++.+++.     ++ ++.++++.+.+.+..
T Consensus       179 ~~~~~~-~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~  214 (239)
T 3lxx_A          179 DIFGDR-YCALNNKATGAEQEAQRAQLLGLIQRVVRE  214 (239)
T ss_dssp             HHHSSS-EEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHcCCE-EEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence            888876 6777655     34 789999999887753

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.64  E-value=3.2e-16  Score=157.10  Aligned_cols=160  Identities=17%  Similarity=0.147  Sum_probs=87.8

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCC-CCCC-------CCCCCCeeeCCccc--CCceeEEEEeCCCCCcc-------h
Q 006490           11 TGVRVVVVGDRGTGKSSLIAAAATESV-PEKV-------PPVHAPTRLPPDFY--PDRVPVTIIDTSSSLEN-------K   73 (643)
Q Consensus        11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~-~~~~-------~~~~~~~~~~~~~~--~~~~~~~i~Dt~G~~~~-------~   73 (643)
                      ..++|+|+|.+|||||||+|+|++... ...+       .++.+.......+.  +..+.+.+|||||+...       .
T Consensus         7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~   86 (274)
T 3t5d_A            7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ   86 (274)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred             cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence            468999999999999999999988763 3333       22222222222233  33468999999998432       1


Q ss_pred             hhh-------HHhhcc-------------CCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCcc
Q 006490           74 GKL-------NEELKR-------------ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA  133 (643)
Q Consensus        74 ~~~-------~~~~~~-------------ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~  133 (643)
                      ...       ..++..             +|+++++++.+.. ++......+++.+..   ++|+|+|+||+|+......
T Consensus        87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~-~~~~~d~~~l~~l~~---~~pvi~V~nK~D~~~~~e~  162 (274)
T 3t5d_A           87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGH-GLKPLDIEFMKRLHE---KVNIIPLIAKADTLTPEEC  162 (274)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCS-SCCHHHHHHHHHHTT---TSCEEEEESSGGGSCHHHH
T ss_pred             HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCC-CCCHHHHHHHHHHhc---cCCEEEEEeccCCCCHHHH
Confidence            221       233333             7899999986552 222222346666654   7999999999998643221


Q ss_pred             chhhhhhhHHHHhhcccceEEEeCcccCCChhHHHHHHHHHHh
Q 006490          134 TSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVL  176 (643)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~  176 (643)
                      ....+.+.......+  .+++++||.++.|++++++.+.+.+.
T Consensus       163 ~~~~~~i~~~l~~~~--i~v~~~sa~~~~~~~~l~~~l~~~~p  203 (274)
T 3t5d_A          163 QQFKKQIMKEIQEHK--IKIYEFPETDDEEENKLVKKIKDRLP  203 (274)
T ss_dssp             HHHHHHHHHHHHHTT--CCCCCC-----------CHHHHHTCS
T ss_pred             HHHHHHHHHHHHHcC--CeEEcCCCCCChhHHHHHHHHhcCCC
Confidence            011111222222222  25889999999999999998887653

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.63  E-value=7.4e-17  Score=167.82  Aligned_cols=97  Identities=20%  Similarity=0.104  Sum_probs=68.6

Q ss_pred             CCcchhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccc-hhhhhhhHHHHhh
Q 006490           69 SLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNAT-SLEEVMGPIMQQF  147 (643)
Q Consensus        69 ~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~-~~~~~~~~~~~~~  147 (643)
                      .+.|...+..+.+.+|++++|+|++++.      ..|.+.+++...++|+++|+||+|+....... ...+.+....+..
T Consensus        56 ~e~f~~~l~~i~~~~~~il~VvD~~d~~------~~~~~~l~~~~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~  129 (368)
T 3h2y_A           56 DDDFLRILNGIGKSDALVVKIVDIFDFN------GSWLPGLHRFVGNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQL  129 (368)
T ss_dssp             CHHHHHHHHHHHHSCCEEEEEEETTSHH------HHCCTTHHHHSSSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhccCcEEEEEEECCCCc------ccHHHHHHHHhCCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHc
Confidence            4567788888999999999999998753      24777777766689999999999997543210 0112222233444


Q ss_pred             cc-cceEEEeCcccCCChhHHHHHH
Q 006490          148 RE-IETCVECSATTMIQVPDVFYYA  171 (643)
Q Consensus       148 ~~-~~~~~~~Sa~~~~gi~~l~~~i  171 (643)
                      +. ...++.+||++|.|++++++.+
T Consensus       130 g~~~~~v~~iSA~~g~gi~~L~~~l  154 (368)
T 3h2y_A          130 GLKPEDVFLISAAKGQGIAELADAI  154 (368)
T ss_dssp             TCCCSEEEECCTTTCTTHHHHHHHH
T ss_pred             CCCcccEEEEeCCCCcCHHHHHhhh
Confidence            42 1268999999999999988754

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.63  E-value=1.1e-15  Score=153.30  Aligned_cols=159  Identities=14%  Similarity=0.104  Sum_probs=92.8

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCC--------CCCcccceEEEEEEcCCCcEEEEEEecCCch-------hhh
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENY--------APTTGEQYAVNVVDQPGGNKKTLILQEIPEE-------GVK  486 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~--------~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~-------~~~  486 (643)
                      ..++|+|+|.+|+|||||+|+|++.......        .+|++.+.....+...|....+.+|||+|..       .+.
T Consensus         7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~   86 (274)
T 3t5d_A            7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ   86 (274)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred             cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence            3589999999999999999999887655443        3455555555555555555688899999962       122


Q ss_pred             hhh-----ccHHhhc-------------cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCc
Q 006490          487 KIL-----SNKEALA-------------SCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPY  548 (643)
Q Consensus       487 ~~~-----~~~~~~~-------------~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~  548 (643)
                      .+.     +...++.             ++|++++++|.+..........++..+..       ++|+++|+||+|+...
T Consensus        87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-------~~pvi~V~nK~D~~~~  159 (274)
T 3t5d_A           87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-------KVNIIPLIAKADTLTP  159 (274)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-------TSCEEEEESSGGGSCH
T ss_pred             HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-------cCCEEEEEeccCCCCH
Confidence            210     0022222             37899999977652211223344444432       6899999999998764


Q ss_pred             cccH---HHHHHHHHHhCCCCcEEeeeccC-CHHHHHHHHHHHH
Q 006490          549 TMAV---QDSARVTQELGIEPPIPVSMKSK-DLNNVFSRIIWAA  588 (643)
Q Consensus       549 ~~~~---~~~~~~~~~~~~~~~~~vSa~~g-~i~~l~~~l~~~~  588 (643)
                      ....   +.+.+.....++. ++++||+++ |+++++++|.+.+
T Consensus       160 ~e~~~~~~~i~~~l~~~~i~-v~~~sa~~~~~~~~l~~~l~~~~  202 (274)
T 3t5d_A          160 EECQQFKKQIMKEIQEHKIK-IYEFPETDDEEENKLVKKIKDRL  202 (274)
T ss_dssp             HHHHHHHHHHHHHHHHTTCC-CCCC-----------CHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHcCCe-EEcCCCCCChhHHHHHHHHhcCC
Confidence            4332   2334444556776 899999999 9999999998864

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.63  E-value=1.3e-15  Score=167.28  Aligned_cols=162  Identities=18%  Similarity=0.166  Sum_probs=106.1

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-CC---CCCeeeCC--------------cccCCceeEEEEeCCCCCcc
Q 006490           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVP-PV---HAPTRLPP--------------DFYPDRVPVTIIDTSSSLEN   72 (643)
Q Consensus        11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~-~~---~~~~~~~~--------------~~~~~~~~~~i~Dt~G~~~~   72 (643)
                      +..+|+|+|++|+|||||+++|++..+....+ +.   .+.+....              .+......++||||||++.|
T Consensus         4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F   83 (594)
T 1g7s_A            4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF   83 (594)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence            45789999999999999999999866433322 11   11111110              01112235999999999999


Q ss_pred             hhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCcc--------------ch---
Q 006490           73 KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA--------------TS---  135 (643)
Q Consensus        73 ~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~--------------~~---  135 (643)
                      ......+++.+|++|+|+|+++....+...  .+..++..  ++|+++|+||+|+......              ..   
T Consensus        84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e--~l~~l~~~--~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v~~  159 (594)
T 1g7s_A           84 TTLRKRGGALADLAILIVDINEGFKPQTQE--ALNILRMY--RTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQ  159 (594)
T ss_dssp             TTSBCSSSBSCSEEEEEEETTTCCCHHHHH--HHHHHHHT--TCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHH
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCccHhHHH--HHHHHHHc--CCeEEEEecccccccccccccCCchHHHHHHhHHHHHH
Confidence            888888899999999999999843322222  23344554  8999999999998642110              00   


Q ss_pred             -hhhhhhHHHHhh----------------cccceEEEeCcccCCChhHHHHHHHHHHh
Q 006490          136 -LEEVMGPIMQQF----------------REIETCVECSATTMIQVPDVFYYAQKAVL  176 (643)
Q Consensus       136 -~~~~~~~~~~~~----------------~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~  176 (643)
                       ..+.+..+...+                +...+++++||++|.|+++|++++...+.
T Consensus       160 ~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~  217 (594)
T 1g7s_A          160 KLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ  217 (594)
T ss_dssp             HHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence             001111111111                12237999999999999999999887653

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.63  E-value=9.3e-16  Score=162.52  Aligned_cols=161  Identities=14%  Similarity=0.092  Sum_probs=114.2

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcC--------CCCCC--CC-------CCcccceEEEEEEcCCCcEEEEEEecCCch
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLER--------PFSEN--YA-------PTTGEQYAVNVVDQPGGNKKTLILQEIPEE  483 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~--------~~~~~--~~-------~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~  483 (643)
                      +..++|+++|.+|+|||||+++|++.        .+...  .+       ..++.+.....+..  ....+.+|||+|++
T Consensus         9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~--~~~~~~iiDtpG~~   86 (405)
T 2c78_A            9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYET--AKRHYSHVDCPGHA   86 (405)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEEC--SSCEEEEEECCCSG
T ss_pred             CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEecc--CCeEEEEEECCChH
Confidence            45689999999999999999999973        11111  00       11112222223333  44677899999998


Q ss_pred             hhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCc-EEEEEeCCCCCCccc----cHHHHHHH
Q 006490          484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVP-CLLIASKDDLKPYTM----AVQDSARV  558 (643)
Q Consensus       484 ~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~p-vilv~NK~Dl~~~~~----~~~~~~~~  558 (643)
                      .+...  +..++..+|++|+|+|++++.. .+..+++..+...      ++| +++|+||+|+.....    ..++..++
T Consensus        87 ~f~~~--~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~~------~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~  157 (405)
T 2c78_A           87 DYIKN--MITGAAQMDGAILVVSAADGPM-PQTREHILLARQV------GVPYIVVFMNKVDMVDDPELLDLVEMEVRDL  157 (405)
T ss_dssp             GGHHH--HHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHHT------TCCCEEEEEECGGGCCCHHHHHHHHHHHHHH
T ss_pred             HHHHH--HHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHHc------CCCEEEEEEECccccCcHHHHHHHHHHHHHH
Confidence            87665  6778899999999999998765 3455666655554      788 899999999985322    13456677


Q ss_pred             HHHhCC----CCcEEeeeccC-C------------------HHHHHHHHHHHHhCCC
Q 006490          559 TQELGI----EPPIPVSMKSK-D------------------LNNVFSRIIWAAEHPH  592 (643)
Q Consensus       559 ~~~~~~----~~~~~vSa~~g-~------------------i~~l~~~l~~~~~~~~  592 (643)
                      .+.+++    .+++++||++| |                  +.++++.+.+.+..+.
T Consensus       158 l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~p~  214 (405)
T 2c78_A          158 LNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPV  214 (405)
T ss_dssp             HHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCCCC
T ss_pred             HHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCCCC
Confidence            777775    36999999999 8                  7788888877665443

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.63  E-value=2.3e-15  Score=164.66  Aligned_cols=160  Identities=15%  Similarity=0.177  Sum_probs=112.0

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCC--CCC-----CCCCC------CCCee----eCCcc---cCCceeEEEEeCCCCCc
Q 006490           12 GVRVVVVGDRGTGKSSLIAAAATES--VPE-----KVPPV------HAPTR----LPPDF---YPDRVPVTIIDTSSSLE   71 (643)
Q Consensus        12 ~~kI~lvG~~~vGKSsL~n~l~~~~--~~~-----~~~~~------~~~~~----~~~~~---~~~~~~~~i~Dt~G~~~   71 (643)
                      ..+|+|+|++|+|||||+++|+...  +..     .....      .+.+.    ....+   +...+.++||||||+.+
T Consensus         6 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~d   85 (600)
T 2ywe_A            6 VRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVD   85 (600)
T ss_dssp             EEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHh
Confidence            4579999999999999999998632  110     00000      00010    11111   23357899999999999


Q ss_pred             chhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcc-c
Q 006490           72 NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE-I  150 (643)
Q Consensus        72 ~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~-~  150 (643)
                      +...+..+++.+|++|+|+|+++..+.+... .|.... ..  ++|+|+|+||+|+...+    .++..+++.+.++. .
T Consensus        86 F~~ev~r~l~~aD~aILVVDa~~gv~~qt~~-~~~~a~-~~--~ipiIvviNKiDl~~a~----~~~v~~el~~~lg~~~  157 (600)
T 2ywe_A           86 FSYEVSRALAACEGALLLIDASQGIEAQTVA-NFWKAV-EQ--DLVIIPVINKIDLPSAD----VDRVKKQIEEVLGLDP  157 (600)
T ss_dssp             GHHHHHHHHHTCSEEEEEEETTTBCCHHHHH-HHHHHH-HT--TCEEEEEEECTTSTTCC----HHHHHHHHHHTSCCCG
T ss_pred             HHHHHHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHH-HC--CCCEEEEEeccCccccC----HHHHHHHHHHhhCCCc
Confidence            9888889999999999999999988877765 354443 33  79999999999997642    23344555555542 1


Q ss_pred             ceEEEeCcccCCChhHHHHHHHHHHhCCC
Q 006490          151 ETCVECSATTMIQVPDVFYYAQKAVLHPT  179 (643)
Q Consensus       151 ~~~~~~Sa~~~~gi~~l~~~i~~~~~~~~  179 (643)
                      ..++++||++|.||+++++.+.+.+..+.
T Consensus       158 ~~vi~vSAktg~GI~~Lle~I~~~lp~p~  186 (600)
T 2ywe_A          158 EEAILASAKEGIGIEEILEAIVNRIPPPK  186 (600)
T ss_dssp             GGCEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred             ccEEEEEeecCCCchHHHHHHHHhccccc
Confidence            24899999999999999999999887654

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.63  E-value=1.3e-15  Score=167.02  Aligned_cols=160  Identities=18%  Similarity=0.226  Sum_probs=110.5

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCC--CCC-----CCCCC------CCCee----eCCcc---cCCceeEEEEeCCCCCc
Q 006490           12 GVRVVVVGDRGTGKSSLIAAAATES--VPE-----KVPPV------HAPTR----LPPDF---YPDRVPVTIIDTSSSLE   71 (643)
Q Consensus        12 ~~kI~lvG~~~vGKSsL~n~l~~~~--~~~-----~~~~~------~~~~~----~~~~~---~~~~~~~~i~Dt~G~~~   71 (643)
                      ..+|+|+|++++|||||+++|+...  +..     .....      .+.+.    ....+   ++.++.++||||||+.+
T Consensus         4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d   83 (599)
T 3cb4_D            4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD   83 (599)
T ss_dssp             EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence            4579999999999999999998632  111     00000      00111    11111   23458899999999999


Q ss_pred             chhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcc-c
Q 006490           72 NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE-I  150 (643)
Q Consensus        72 ~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~-~  150 (643)
                      +...+..+++.+|++|+|+|+++..+.+... .|.... ..  ++|+|+|+||+|+...+    .++...++.+.++. .
T Consensus        84 F~~ev~~~l~~aD~aILVVDa~~gv~~qt~~-~~~~~~-~~--~ipiIvViNKiDl~~a~----~~~v~~ei~~~lg~~~  155 (599)
T 3cb4_D           84 FSYEVSRSLAACEGALLVVDAGQGVEAQTLA-NCYTAM-EM--DLEVVPVLNKIDLPAAD----PERVAEEIEDIVGIDA  155 (599)
T ss_dssp             GHHHHHHHHHHCSEEEEEEETTTCCCTHHHH-HHHHHH-HT--TCEEEEEEECTTSTTCC----HHHHHHHHHHHTCCCC
T ss_pred             HHHHHHHHHHHCCEEEEEEECCCCCCHHHHH-HHHHHH-HC--CCCEEEeeeccCccccc----HHHHHHHHHHHhCCCc
Confidence            9999999999999999999999887777665 355444 33  78999999999997643    33444556665542 1


Q ss_pred             ceEEEeCcccCCChhHHHHHHHHHHhCCC
Q 006490          151 ETCVECSATTMIQVPDVFYYAQKAVLHPT  179 (643)
Q Consensus       151 ~~~~~~Sa~~~~gi~~l~~~i~~~~~~~~  179 (643)
                      ..++++||++|.||+++++.+.+.+..+.
T Consensus       156 ~~vi~vSAktg~GI~~Ll~~I~~~lp~p~  184 (599)
T 3cb4_D          156 TDAVRCSAKTGVGVQDVLERLVRDIPPPE  184 (599)
T ss_dssp             TTCEEECTTTCTTHHHHHHHHHHHSCCCC
T ss_pred             ceEEEeecccCCCchhHHHHHhhcCCCcc
Confidence            24899999999999999999999886654

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.63  E-value=2.3e-15  Score=160.85  Aligned_cols=157  Identities=17%  Similarity=0.112  Sum_probs=105.5

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCC--CCCC----------CCCCCCC-e-----------------e---eCCccc
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATES--VPEK----------VPPVHAP-T-----------------R---LPPDFY   55 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~--~~~~----------~~~~~~~-~-----------------~---~~~~~~   55 (643)
                      .++.++|+++|++|+|||||+++|++..  +...          .+++.+. .                 +   ....+.
T Consensus        21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~  100 (434)
T 1zun_B           21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS  100 (434)
T ss_dssp             SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred             cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee
Confidence            3456899999999999999999998764  1111          1111100 0                 0   001133


Q ss_pred             CCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCC-cEEEEEecccCCCCCcc-
Q 006490           56 PDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKV-PIIVAGCKLDLRGDHNA-  133 (643)
Q Consensus        56 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~-pvilv~NK~D~~~~~~~-  133 (643)
                      ..+..+.||||||++++...+..++..+|++|+|+|+++....+..  .++..+...  +. |+|+|+||+|+...... 
T Consensus       101 ~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~--~~l~~~~~~--~~~~iIvviNK~Dl~~~~~~~  176 (434)
T 1zun_B          101 TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTR--RHSYIASLL--GIKHIVVAINKMDLNGFDERV  176 (434)
T ss_dssp             CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHH--HHHHHHHHT--TCCEEEEEEECTTTTTSCHHH
T ss_pred             cCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEEcCcCCcccHHH
Confidence            4567899999999999888888899999999999999887544332  355555555  44 69999999999763211 


Q ss_pred             -chhhhhhhHHHHhhc---ccceEEEeCcccCCChhHHHH
Q 006490          134 -TSLEEVMGPIMQQFR---EIETCVECSATTMIQVPDVFY  169 (643)
Q Consensus       134 -~~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~gi~~l~~  169 (643)
                       ....+.+..+.+.++   ...+++++||++|.|++++++
T Consensus       177 ~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~  216 (434)
T 1zun_B          177 FESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSE  216 (434)
T ss_dssp             HHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCT
T ss_pred             HHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccccc
Confidence             012233444555554   113689999999999998643

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.63  E-value=2e-16  Score=161.02  Aligned_cols=158  Identities=16%  Similarity=0.122  Sum_probs=101.0

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCCCC-----CC-CC----------------------cccc-------------
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSEN-----YA-PT----------------------TGEQ-------------  459 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~-----~~-~t----------------------~~~~-------------  459 (643)
                      ...++|+|+|.+|||||||+|+|++..+...     +. |+                      ++.+             
T Consensus        24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i  103 (299)
T 2aka_B           24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  103 (299)
T ss_dssp             CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence            3457999999999999999999999987522     21 32                      0000             


Q ss_pred             -----------eEEEEEEcCCCcEEEEEEecCCch-------------hhhhhhccHHhhccCCEEE-EEEeCCChhhHH
Q 006490          460 -----------YAVNVVDQPGGNKKTLILQEIPEE-------------GVKKILSNKEALASCDVTI-FVYDSSDEYSWK  514 (643)
Q Consensus       460 -----------~~~~~v~~~g~~~~~~i~d~~g~~-------------~~~~~~~~~~~~~~ad~il-lv~D~s~~~s~~  514 (643)
                                 ..+ .+..+ ....+.+|||+|..             .+..+  ...+++.++.++ +|+|++++.+.+
T Consensus       104 ~g~~~gi~~~~~~~-~~~~~-~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~il~v~d~~~~~~~~  179 (299)
T 2aka_B          104 TGTNKGISPVPINL-RVYSP-HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDM--LMQFVTKENCLILAVSPANSDLANS  179 (299)
T ss_dssp             CSSTTCCCSCCEEE-EEEET-TCCSEEEEECCCBCSSCCSSSCTTHHHHHHHH--HHHHHTSTTEEEEEEEESSSCGGGC
T ss_pred             cccCCCccccceEE-EEeCC-CCCCceEEeCCCCCCCcCCCCCchHHHHHHHH--HHHHHcCCCeEEEEEecCCcchhhh
Confidence                       000 01111 12467789999953             22233  567888888776 799998865544


Q ss_pred             HHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHH--hCCCCcEEeeeccC-CHHHHHHHHHHHH
Q 006490          515 RTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQE--LGIEPPIPVSMKSK-DLNNVFSRIIWAA  588 (643)
Q Consensus       515 ~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~--~~~~~~~~vSa~~g-~i~~l~~~l~~~~  588 (643)
                      ....++..+...      +.|+++|+||+|+...... .+..+.....  .++.+++++||++| |++++++.+.+..
T Consensus       180 ~~~~~~~~~~~~------~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~  251 (299)
T 2aka_B          180 DALKIAKEVDPQ------GQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAER  251 (299)
T ss_dssp             HHHHHHHHHCTT------CSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHH
T ss_pred             HHHHHHHHhCCC------CCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHH
Confidence            433454444322      7999999999999764331 2211110001  12335889999999 9999999998843

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.63  E-value=4.5e-16  Score=147.33  Aligned_cols=129  Identities=19%  Similarity=0.270  Sum_probs=88.9

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCCCC---CCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhcc
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSEN---YAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALAS  497 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~---~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~  497 (643)
                      ...++|+|+|.+|||||||+|+|++..+...   +.++++..+         ....+.+||++|.+.+...  +..++..
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~--~~~~~~~  114 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYK--LSDYLKT  114 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC---------CCTTCSEEEETTCCBSSCC--HHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee---------cCCeEEEEECCCCchHHHH--HHHHHHh
Confidence            4568999999999999999999999876442   223332222         2334567999998776554  4444544


Q ss_pred             ----CCEEEEEEeCC-ChhhHHHHHHHHHHHHHhcCC-CCCCCcEEEEEeCCCCCCccccHHHHHHHHH
Q 006490          498 ----CDVTIFVYDSS-DEYSWKRTKELLVEVARLGED-SGYGVPCLLIASKDDLKPYTMAVQDSARVTQ  560 (643)
Q Consensus       498 ----ad~illv~D~s-~~~s~~~~~~~~~~i~~~~~~-~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~  560 (643)
                          +|++++|+|++ ++.++.....|+..+...... ...+.|+++|+||+|+.......+..+.+.+
T Consensus       115 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~  183 (193)
T 2ged_A          115 RAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALES  183 (193)
T ss_dssp             HGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHH
T ss_pred             hcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHHHH
Confidence                99999999999 888999888888777654211 0117999999999999876555444444443

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.63  E-value=9.6e-16  Score=147.20  Aligned_cols=163  Identities=14%  Similarity=0.067  Sum_probs=100.3

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcc----------hhhhHH
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLEN----------KGKLNE   78 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~   78 (643)
                      ..+..+|+|+|++|||||||+|+|++..+.....++.+.+.....+...+ .+.+|||||+...          ......
T Consensus        23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~  101 (210)
T 1pui_A           23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRALGE  101 (210)
T ss_dssp             CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET-TEEEEECCCCC------CCHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC-CEEEEECcCCcccccCHHHHHHHHHHHHH
Confidence            45678999999999999999999998774333333333333211111112 5889999997531          122223


Q ss_pred             hh---ccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEE
Q 006490           79 EL---KRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVE  155 (643)
Q Consensus        79 ~~---~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (643)
                      ++   +.++++++|+|++.+.+....  .+..++...  ++|+++|+||+|+..........+.+..+..+.+....+++
T Consensus       102 ~~~~~~~~~~~~~v~d~~~~~~~~~~--~~~~~~~~~--~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (210)
T 1pui_A          102 YLEKRQSLQGLVVLMDIRHPLKDLDQ--QMIEWAVDS--NIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVET  177 (210)
T ss_dssp             HHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHHT--TCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEE
T ss_pred             HHHhhhcccEEEEEEECCCCCchhHH--HHHHHHHHc--CCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEE
Confidence            33   578999999999887665432  234444444  78999999999986532110011233344444433346789


Q ss_pred             eCcccCCChhHHHHHHHHHHh
Q 006490          156 CSATTMIQVPDVFYYAQKAVL  176 (643)
Q Consensus       156 ~Sa~~~~gi~~l~~~i~~~~~  176 (643)
                      +||+++.|++++++.+.+.+.
T Consensus       178 ~Sal~~~~~~~l~~~l~~~~~  198 (210)
T 1pui_A          178 FSSLKKQGVDKLRQKLDTWFS  198 (210)
T ss_dssp             CBTTTTBSHHHHHHHHHHHHC
T ss_pred             EeecCCCCHHHHHHHHHHHHh
Confidence            999999999999998887653

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.62  E-value=1.3e-15  Score=168.46  Aligned_cols=157  Identities=17%  Similarity=0.130  Sum_probs=104.0

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCC--------------------------------CCCCCCeeeCCcccC
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKV--------------------------------PPVHAPTRLPPDFYP   56 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~   56 (643)
                      .++.+||+|+|++|||||||+|+|++.......                                ++++ .......+..
T Consensus       164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiT-id~~~~~~~~  242 (611)
T 3izq_1          164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVT-VSICTSHFST  242 (611)
T ss_dssp             CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTC-CSCSCCEEEC
T ss_pred             cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCee-EeeeeEEEec
Confidence            456799999999999999999999976421111                                1111 1112334556


Q ss_pred             CceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECCCcc---cH--HHHHHHHHHHHHhcCCCCcEEEEEecccCCCCC
Q 006490           57 DRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQS---TL--SRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH  131 (643)
Q Consensus        57 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~~~---s~--~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~  131 (643)
                      .+..+.||||||++.+...+..+++.+|++|+|+|+++..   ++  .......+..+.... ..|+|+|+||+|+....
T Consensus       243 ~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lg-i~~iIVVvNKiDl~~~~  321 (611)
T 3izq_1          243 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLG-IHNLIIAMNKMDNVDWS  321 (611)
T ss_dssp             SSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTT-CCEEEEEEECTTTTTTC
T ss_pred             CCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcC-CCeEEEEEecccccchh
Confidence            6789999999999999888889999999999999988642   00  011111233333331 24599999999997643


Q ss_pred             ccchhh---hhhhHHHHhhcc---cceEEEeCcccCCChhHHH
Q 006490          132 NATSLE---EVMGPIMQQFRE---IETCVECSATTMIQVPDVF  168 (643)
Q Consensus       132 ~~~~~~---~~~~~~~~~~~~---~~~~~~~Sa~~~~gi~~l~  168 (643)
                      .. ..+   ..+..+...++.   ..++++|||++|.||.++.
T Consensus       322 ~~-~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~  363 (611)
T 3izq_1          322 QQ-RFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIE  363 (611)
T ss_dssp             HH-HHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCT
T ss_pred             HH-HHHHHHHHHHHHHHhhcccccCccEEeeecccCCCccccC
Confidence            22 222   223333344432   2379999999999998753

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.62  E-value=3.1e-16  Score=163.29  Aligned_cols=98  Identities=18%  Similarity=0.118  Sum_probs=67.9

Q ss_pred             CCCcchhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccc-hhhhhhhHHHHh
Q 006490           68 SSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNAT-SLEEVMGPIMQQ  146 (643)
Q Consensus        68 G~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~-~~~~~~~~~~~~  146 (643)
                      .++.|......+++.++++++|+|++++.+      .|.+.+.+...++|+++|+||+|+....... ...+.+......
T Consensus        57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~------s~~~~l~~~l~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~  130 (369)
T 3ec1_A           57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG------SFIPGLPRFAADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEE  130 (369)
T ss_dssp             --CHHHHHHHHHHHHCCEEEEEEETTCSGG------GCCSSHHHHCTTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHhhccCcEEEEEEECCCCCC------chhhHHHHHhCCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHH
Confidence            367788888888899999999999998764      3555565555589999999999997643210 111222222334


Q ss_pred             hccc-ceEEEeCcccCCChhHHHHHH
Q 006490          147 FREI-ETCVECSATTMIQVPDVFYYA  171 (643)
Q Consensus       147 ~~~~-~~~~~~Sa~~~~gi~~l~~~i  171 (643)
                      .+.. ..++.+||++|.|++++++.+
T Consensus       131 ~g~~~~~v~~iSA~~g~gi~~L~~~I  156 (369)
T 3ec1_A          131 LGLCPVDVCLVSAAKGIGMAKVMEAI  156 (369)
T ss_dssp             TTCCCSEEEECBTTTTBTHHHHHHHH
T ss_pred             cCCCcccEEEEECCCCCCHHHHHHHH
Confidence            4321 268999999999999988754

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.62  E-value=2.5e-15  Score=158.57  Aligned_cols=162  Identities=16%  Similarity=0.124  Sum_probs=111.0

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCC-------CCCC--CCC-----CcccceEEEEEEcCCCcEEEEEEecCCchhhhh
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERP-------FSEN--YAP-----TTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK  487 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~-------~~~~--~~~-----t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~  487 (643)
                      ..++|+++|.+|+|||||+++|++..       +...  .+.     ..+.......+........+.+|||+|++.+..
T Consensus         2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~   81 (397)
T 1d2e_A            2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK   81 (397)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred             CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence            35899999999999999999999741       1100  000     000111111122222446788999999988766


Q ss_pred             hhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCc-EEEEEeCCCCCCccc----cHHHHHHHHHHh
Q 006490          488 ILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVP-CLLIASKDDLKPYTM----AVQDSARVTQEL  562 (643)
Q Consensus       488 ~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~p-vilv~NK~Dl~~~~~----~~~~~~~~~~~~  562 (643)
                      .  +..++..+|++|+|+|++++...+ ..+++..+...      ++| +++|+||+|+.....    ..++..++.+.+
T Consensus        82 ~--~~~~~~~aD~~ilVvda~~g~~~q-t~e~l~~~~~~------~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~  152 (397)
T 1d2e_A           82 N--MITGTAPLDGCILVVAANDGPMPQ-TREHLLLARQI------GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEF  152 (397)
T ss_dssp             H--HHHTSSCCSEEEEEEETTTCSCHH-HHHHHHHHHHT------TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHT
T ss_pred             H--HHhhHhhCCEEEEEEECCCCCCHH-HHHHHHHHHHc------CCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHc
Confidence            5  677889999999999999875533 33444444433      788 789999999985322    134666777887


Q ss_pred             CC----CCcEEeeeccC-C----------HHHHHHHHHHHHhCCC
Q 006490          563 GI----EPPIPVSMKSK-D----------LNNVFSRIIWAAEHPH  592 (643)
Q Consensus       563 ~~----~~~~~vSa~~g-~----------i~~l~~~l~~~~~~~~  592 (643)
                      ++    .+++++||++| |          +.++++.|.+.+..|.
T Consensus       153 ~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~p~  197 (397)
T 1d2e_A          153 GYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVPT  197 (397)
T ss_dssp             TSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCCCC
T ss_pred             CCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCCCC
Confidence            75    36999999997 6          8899999988775443

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.61  E-value=7.6e-16  Score=162.59  Aligned_cols=164  Identities=16%  Similarity=0.142  Sum_probs=112.4

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCC-------CCCC--CCC-----CCCCee--eCCcccCCceeEEEEeCCCCCcchh
Q 006490           11 TGVRVVVVGDRGTGKSSLIAAAATES-------VPEK--VPP-----VHAPTR--LPPDFYPDRVPVTIIDTSSSLENKG   74 (643)
Q Consensus        11 ~~~kI~lvG~~~vGKSsL~n~l~~~~-------~~~~--~~~-----~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~   74 (643)
                      +.+||+++|++|+|||||+++|++..       +...  .+.     ..+.+.  ....+...+..+.||||||+++|..
T Consensus         2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~   81 (397)
T 1d2e_A            2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK   81 (397)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred             CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence            56899999999999999999998741       1100  000     001111  1122445678899999999988888


Q ss_pred             hhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCc-EEEEEecccCCCCCccc-hhhhhhhHHHHhhcc---
Q 006490           75 KLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVP-IIVAGCKLDLRGDHNAT-SLEEVMGPIMQQFRE---  149 (643)
Q Consensus        75 ~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p-vilv~NK~D~~~~~~~~-~~~~~~~~~~~~~~~---  149 (643)
                      .+..+++.+|++|+|+|+++....+...  ++..++..  ++| +++|+||+|+..+.... ...+.+..+.+.++.   
T Consensus        82 ~~~~~~~~aD~~ilVvda~~g~~~qt~e--~l~~~~~~--~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~  157 (397)
T 1d2e_A           82 NMITGTAPLDGCILVVAANDGPMPQTRE--HLLLARQI--GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGE  157 (397)
T ss_dssp             HHHHTSSCCSEEEEEEETTTCSCHHHHH--HHHHHHHT--TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred             HHHhhHhhCCEEEEEEECCCCCCHHHHH--HHHHHHHc--CCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence            8888999999999999999875544432  44555555  788 78999999997522110 122334555555542   


Q ss_pred             cceEEEeCcccCCC----------hhHHHHHHHHHHhCC
Q 006490          150 IETCVECSATTMIQ----------VPDVFYYAQKAVLHP  178 (643)
Q Consensus       150 ~~~~~~~Sa~~~~g----------i~~l~~~i~~~~~~~  178 (643)
                      ..+++++||++|.|          +.+|++.+.+.+..+
T Consensus       158 ~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~p  196 (397)
T 1d2e_A          158 ETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVP  196 (397)
T ss_dssp             TSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCCC
T ss_pred             cCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCCC
Confidence            24799999999775          888998888776543

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.61  E-value=1.1e-15  Score=165.79  Aligned_cols=130  Identities=12%  Similarity=0.046  Sum_probs=87.0

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCC---------------CCC-------CCcccceEEEEEEcCCCcEEEEEEec
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSE---------------NYA-------PTTGEQYAVNVVDQPGGNKKTLILQE  479 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~---------------~~~-------~t~~~~~~~~~v~~~g~~~~~~i~d~  479 (643)
                      +..+|+|+|.+|||||||+|+|+......               ..+       +.++.......+..  ....+.+|||
T Consensus        12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~--~~~~i~liDT   89 (528)
T 3tr5_A           12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPY--KDYLINLLDT   89 (528)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEE--TTEEEEEECC
T ss_pred             cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEe--CCEEEEEEEC
Confidence            35689999999999999999997322111               000       11111222233333  3567889999


Q ss_pred             CCchhhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHH
Q 006490          480 IPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVT  559 (643)
Q Consensus       480 ~g~~~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~  559 (643)
                      +|+..+...  +..+++.+|++|+|+|++++.+.+....| ..+...      ++|+++|+||+|+.... ..+..+++.
T Consensus        90 PG~~df~~~--~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~~~------~iPiivviNK~Dl~~~~-~~~~l~ei~  159 (528)
T 3tr5_A           90 PGHADFTED--TYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCRLR------HTPIMTFINKMDRDTRP-SIELLDEIE  159 (528)
T ss_dssp             CCSTTCCHH--HHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHHTT------TCCEEEEEECTTSCCSC-HHHHHHHHH
T ss_pred             CCchhHHHH--HHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHHc------CCCEEEEEeCCCCcccc-HHHHHHHHH
Confidence            999887765  78899999999999999998776654444 444443      89999999999996532 223344444


Q ss_pred             HHhC
Q 006490          560 QELG  563 (643)
Q Consensus       560 ~~~~  563 (643)
                      +.++
T Consensus       160 ~~l~  163 (528)
T 3tr5_A          160 SILR  163 (528)
T ss_dssp             HHHC
T ss_pred             HhhC
Confidence            4443

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.61  E-value=3.4e-15  Score=158.47  Aligned_cols=167  Identities=16%  Similarity=0.117  Sum_probs=106.2

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCC---CCCC-CCCCCC-CeeeCCcc---------------c--CC----ceeEE
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATES---VPEK-VPPVHA-PTRLPPDF---------------Y--PD----RVPVT   62 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~---~~~~-~~~~~~-~~~~~~~~---------------~--~~----~~~~~   62 (643)
                      ..+.++|+++|++++|||||+++|++..   +... .++.+- .......+               .  ..    ...+.
T Consensus         7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~   86 (410)
T 1kk1_A            7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS   86 (410)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence            4567899999999999999999999643   2111 121111 00000000               0  11    26799


Q ss_pred             EEeCCCCCcchhhhHHhhccCCEEEEEEECCCcc-cHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhh
Q 006490           63 IIDTSSSLENKGKLNEELKRADAVVLTYACNQQS-TLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMG  141 (643)
Q Consensus        63 i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~~~-s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~  141 (643)
                      ||||||++.+.......+..+|++|+|+|+++.. ..+..  ..+..++... ..|+++|+||+|+..........+.+.
T Consensus        87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~--e~l~~~~~~~-~~~iivviNK~Dl~~~~~~~~~~~~i~  163 (410)
T 1kk1_A           87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTR--EHLMALQIIG-QKNIIIAQNKIELVDKEKALENYRQIK  163 (410)
T ss_dssp             EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHH--HHHHHHHHHT-CCCEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred             EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHH--HHHHHHHHcC-CCcEEEEEECccCCCHHHHHHHHHHHH
Confidence            9999999888777777788899999999998653 22211  1222333332 358999999999976421101112223


Q ss_pred             HHHHhh-cccceEEEeCcccCCChhHHHHHHHHHHhCC
Q 006490          142 PIMQQF-REIETCVECSATTMIQVPDVFYYAQKAVLHP  178 (643)
Q Consensus       142 ~~~~~~-~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~~~  178 (643)
                      .+.... ....+++++||++|.|+++|++.+.+.+..+
T Consensus       164 ~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~p  201 (410)
T 1kk1_A          164 EFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPTP  201 (410)
T ss_dssp             HHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred             HHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence            333221 1224799999999999999999998876544

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.60  E-value=1.6e-15  Score=157.71  Aligned_cols=149  Identities=15%  Similarity=0.108  Sum_probs=104.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECC
Q 006490           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACN   93 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~   93 (643)
                      +|+++|++|+|||||+++|+......      ..  ....+...+..+.+|||||++++.......++.+|++|+|+| +
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~~~giTi------~~--~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~   93 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLGKKGTSS------DI--TMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-P   93 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTSEEEEES------SS--EEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-T
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCEEE------Ee--eEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-C
Confidence            89999999999999999998211100      01  112344566789999999999998888888999999999999 5


Q ss_pred             CcccHHHHHHHHHHHHHhcCCCCcE-EEEEe-cccCCCCCccchhhhhhhHHHHhhc-ccceEEE--eCccc---CCChh
Q 006490           94 QQSTLSRLSSYWLPELRRLEIKVPI-IVAGC-KLDLRGDHNATSLEEVMGPIMQQFR-EIETCVE--CSATT---MIQVP  165 (643)
Q Consensus        94 ~~~s~~~~~~~~~~~l~~~~~~~pv-ilv~N-K~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~Sa~~---~~gi~  165 (643)
                      ... ..... +++..++..  ++|. |+|+| |+|+ .........+.+..+...++ ...++++  +||++   |.|++
T Consensus        94 ~g~-~~qt~-e~~~~~~~~--~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~  168 (370)
T 2elf_A           94 QGL-DAHTG-ECIIALDLL--GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVD  168 (370)
T ss_dssp             TCC-CHHHH-HHHHHHHHT--TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHH
T ss_pred             CCC-cHHHH-HHHHHHHHc--CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCHH
Confidence            433 33333 466666666  6787 88999 9999 42211001123333333332 1247999  99999   99999


Q ss_pred             HHHHHHHHHHh
Q 006490          166 DVFYYAQKAVL  176 (643)
Q Consensus       166 ~l~~~i~~~~~  176 (643)
                      ++++.+.+.+.
T Consensus       169 ~L~~~l~~~~~  179 (370)
T 2elf_A          169 ELKARINEVAE  179 (370)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHhhcc
Confidence            99998887654

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.59  E-value=1.6e-15  Score=162.04  Aligned_cols=156  Identities=18%  Similarity=0.179  Sum_probs=105.0

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcC--CCCCC------------------------------CCCCCCCeeeCCcccCC
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATE--SVPEK------------------------------VPPVHAPTRLPPDFYPD   57 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~--~~~~~------------------------------~~~~~~~~~~~~~~~~~   57 (643)
                      ++.++|+++|++|+|||||+++|+..  .+...                              ..+++ .......+...
T Consensus         4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giT-i~~~~~~~~~~   82 (435)
T 1jny_A            4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVT-INLTFMRFETK   82 (435)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC------------CEEECS
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCce-eEeeEEEEecC
Confidence            46789999999999999999999875  22210                              01110 11122345567


Q ss_pred             ceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECCCcccHHHHHH------HHHHHHHhcCCCC-cEEEEEecccCCCC
Q 006490           58 RVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSS------YWLPELRRLEIKV-PIIVAGCKLDLRGD  130 (643)
Q Consensus        58 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~------~~~~~l~~~~~~~-pvilv~NK~D~~~~  130 (643)
                      ++.+.||||||++++...+..+++.+|++|+|+|+++ .+++....      +.+..+...  +. |+|+|+||+|+...
T Consensus        83 ~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~--~~~~iivviNK~Dl~~~  159 (435)
T 1jny_A           83 KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTM--GLDQLIVAVNKMDLTEP  159 (435)
T ss_dssp             SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHT--TCTTCEEEEECGGGSSS
T ss_pred             CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHc--CCCeEEEEEEcccCCCc
Confidence            7899999999999998888899999999999999988 55554321      233333333  44 69999999999763


Q ss_pred             C--cc--chhhhhhhHHHHhhcc---cceEEEeCcccCCChhHHHH
Q 006490          131 H--NA--TSLEEVMGPIMQQFRE---IETCVECSATTMIQVPDVFY  169 (643)
Q Consensus       131 ~--~~--~~~~~~~~~~~~~~~~---~~~~~~~Sa~~~~gi~~l~~  169 (643)
                      .  ..  ....+.+..+...++.   ..+++++||++|.|+.++++
T Consensus       160 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~  205 (435)
T 1jny_A          160 PYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE  205 (435)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred             cccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence            1  11  0122334555555441   14699999999999986543

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.59  E-value=4.1e-15  Score=169.66  Aligned_cols=166  Identities=17%  Similarity=0.155  Sum_probs=113.7

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHhcCC-------CCC--CCC-----CCCCCee--eCCcccCCceeEEEEeCCCCCc
Q 006490            8 SSRTGVRVVVVGDRGTGKSSLIAAAATES-------VPE--KVP-----PVHAPTR--LPPDFYPDRVPVTIIDTSSSLE   71 (643)
Q Consensus         8 ~~~~~~kI~lvG~~~vGKSsL~n~l~~~~-------~~~--~~~-----~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~   71 (643)
                      ..++.++|+++|++|+|||||+++|++..       +..  ..+     ...+.+.  ....+...+..+.||||||+++
T Consensus       292 ~~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHed  371 (1289)
T 3avx_A          292 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHAD  371 (1289)
T ss_dssp             CCCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHH
T ss_pred             ccCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHH
Confidence            45667999999999999999999998741       100  000     0111111  1223445678899999999999


Q ss_pred             chhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCc-EEEEEecccCCCCCccc-hhhhhhhHHHHhhcc
Q 006490           72 NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVP-IIVAGCKLDLRGDHNAT-SLEEVMGPIMQQFRE  149 (643)
Q Consensus        72 ~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p-vilv~NK~D~~~~~~~~-~~~~~~~~~~~~~~~  149 (643)
                      +...+...+..+|++|+|+|+++....+..  .++..++..  ++| +|+|+||+|+....... ...+.+..+...++.
T Consensus       372 F~~~mi~gas~AD~aILVVDAtdGv~~QTr--EhL~ll~~l--gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~  447 (1289)
T 3avx_A          372 YVKNMITGAAQMDGAILVVAATDGPMPQTR--EHILLGRQV--GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDF  447 (1289)
T ss_dssp             HHHHHHHTSCCCSEEEEEEETTTCSCTTHH--HHHHHHHHH--TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHhhCCEEEEEEcCCccCcHHHH--HHHHHHHHc--CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccc
Confidence            888888899999999999999887544332  355666655  788 78999999997532110 122334555555541


Q ss_pred             ---cceEEEeCcccC--------CChhHHHHHHHHHHhC
Q 006490          150 ---IETCVECSATTM--------IQVPDVFYYAQKAVLH  177 (643)
Q Consensus       150 ---~~~~~~~Sa~~~--------~gi~~l~~~i~~~~~~  177 (643)
                         ..+++++||++|        .||.++++.+.+.+..
T Consensus       448 ~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~  486 (1289)
T 3avx_A          448 PGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPE  486 (1289)
T ss_dssp             CTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCC
T ss_pred             cccceeEEEEEeccCCCCCccccccchhhHhHHhhhcCC
Confidence               247999999999        4688999988876643

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.58  E-value=3e-15  Score=160.64  Aligned_cols=155  Identities=17%  Similarity=0.124  Sum_probs=103.5

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCC--CCCC------------------------------CCCCCCCeeeCCcccC
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATES--VPEK------------------------------VPPVHAPTRLPPDFYP   56 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~--~~~~------------------------------~~~~~~~~~~~~~~~~   56 (643)
                      .++.++|+++|++|+|||||+|+|++..  +...                              ..+.+ .......+..
T Consensus         4 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiT-i~~~~~~~~~   82 (458)
T 1f60_A            4 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGIT-IDIALWKFET   82 (458)
T ss_dssp             CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCC-CSCSCEEEEC
T ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcE-EEEEEEEEec
Confidence            4567999999999999999999998641  2110                              01100 0001123455


Q ss_pred             CceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECCCccc---HH---HHHHHHHHHHHhcCCCCc-EEEEEecccCCC
Q 006490           57 DRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQST---LS---RLSSYWLPELRRLEIKVP-IIVAGCKLDLRG  129 (643)
Q Consensus        57 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~~~s---~~---~~~~~~~~~l~~~~~~~p-vilv~NK~D~~~  129 (643)
                      .+..+.||||||++++...+..++..+|++|+|+|+++...   ++   ... .++..+...  ++| +|+|+||+|+..
T Consensus        83 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~-~~~~~~~~~--~v~~iivviNK~Dl~~  159 (458)
T 1f60_A           83 PKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTR-EHALLAFTL--GVRQLIVAVNKMDSVK  159 (458)
T ss_dssp             SSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHH-HHHHHHHHT--TCCEEEEEEECGGGGT
T ss_pred             CCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHH-HHHHHHHHc--CCCeEEEEEEcccccc
Confidence            67889999999999998888899999999999999886532   11   122 233344444  565 999999999974


Q ss_pred             CCcc--chhhhhhhHHHHhhcc---cceEEEeCcccCCChhHH
Q 006490          130 DHNA--TSLEEVMGPIMQQFRE---IETCVECSATTMIQVPDV  167 (643)
Q Consensus       130 ~~~~--~~~~~~~~~~~~~~~~---~~~~~~~Sa~~~~gi~~l  167 (643)
                      ....  ....+.+..+...++.   ..+++++||++|.|+.++
T Consensus       160 ~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          160 WDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence            2211  0122334444455542   147999999999999764

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.58  E-value=9.7e-15  Score=158.07  Aligned_cols=151  Identities=15%  Similarity=0.104  Sum_probs=98.8

Q ss_pred             cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCC-------------------------------CCCcccceEEEEEEcC
Q 006490          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENY-------------------------------APTTGEQYAVNVVDQP  468 (643)
Q Consensus       420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~-------------------------------~~t~~~~~~~~~v~~~  468 (643)
                      .+..+||+++|.+|+|||||+|+|++.......                               .+.++.+.....++. 
T Consensus        30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-  108 (483)
T 3p26_A           30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST-  108 (483)
T ss_dssp             SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEEC-
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEec-
Confidence            345799999999999999999999865211110                               011122223333444 


Q ss_pred             CCcEEEEEEecCCchhhhhhhccHHhhccCCEEEEEEeCCChhhHH------HHHHHHHHHHHhcCCCCCCCcEEEEEeC
Q 006490          469 GGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWK------RTKELLVEVARLGEDSGYGVPCLLIASK  542 (643)
Q Consensus       469 g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv~D~s~~~s~~------~~~~~~~~i~~~~~~~~~~~pvilv~NK  542 (643)
                       ....+.+|||+|++.+...  +..++..||++|+|+|++++.++.      ...+.+..+... .    ..|+|+|+||
T Consensus       109 -~~~~~~iiDTPG~~~f~~~--~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~-~----~~~iIvviNK  180 (483)
T 3p26_A          109 -HRANFTIVDAPGHRDFVPN--AIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL-G----IHNLIIAMNK  180 (483)
T ss_dssp             -SSCEEEEECCCCCGGGHHH--HHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT-T----CCCEEEEEEC
T ss_pred             -CCceEEEEECCCcHHHHHH--HHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc-C----CCcEEEEEEC
Confidence             3467889999999888776  778899999999999999875432      222222222222 1    2569999999


Q ss_pred             CCCCCcccc-----HHHHHHHHHHhCCC----CcEEeeeccC-CHHH
Q 006490          543 DDLKPYTMA-----VQDSARVTQELGIE----PPIPVSMKSK-DLNN  579 (643)
Q Consensus       543 ~Dl~~~~~~-----~~~~~~~~~~~~~~----~~~~vSa~~g-~i~~  579 (643)
                      +|+.+....     .+....+.+.+++.    +++++||++| |+++
T Consensus       181 ~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e  227 (483)
T 3p26_A          181 MDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK  227 (483)
T ss_dssp             GGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred             cCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence            999763211     33445555566652    5899999999 9874

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.58  E-value=5.9e-15  Score=146.82  Aligned_cols=120  Identities=15%  Similarity=0.124  Sum_probs=85.2

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCC--CCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhc------
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATESV--PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELK------   81 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~------   81 (643)
                      ++.++|+|+|++|||||||+|+|++..+  ....+++... .....+..++..+.+|||||+.++....+.+++      
T Consensus        34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l  112 (262)
T 3def_A           34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLR-PVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFL  112 (262)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCC-CEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCccee-eEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHH
Confidence            4679999999999999999999999884  3333332211 122344556789999999999876555444433      


Q ss_pred             ---cCCEEEEEEECCCcccHHHHHHHHHHHHHhcC-C--CCcEEEEEecccCCCCC
Q 006490           82 ---RADAVVLTYACNQQSTLSRLSSYWLPELRRLE-I--KVPIIVAGCKLDLRGDH  131 (643)
Q Consensus        82 ---~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~-~--~~pvilv~NK~D~~~~~  131 (643)
                         .+|++|+|+|++... +......|++.++... .  ..|+++|+||+|+...+
T Consensus       113 ~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~  167 (262)
T 3def_A          113 VNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPD  167 (262)
T ss_dssp             TTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCST
T ss_pred             hcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCC
Confidence               789999999987654 4444335777776542 2  25999999999986543

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.58  E-value=4.7e-16  Score=171.47  Aligned_cols=154  Identities=20%  Similarity=0.174  Sum_probs=84.1

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCC--CCCC----------CCC-----------------CCCCee--eCCcccCC
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATES--VPEK----------VPP-----------------VHAPTR--LPPDFYPD   57 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~--~~~~----------~~~-----------------~~~~~~--~~~~~~~~   57 (643)
                      .++.++|+|+|++|+|||||+|+|+...  +...          ..+                 ..+.|.  ....+...
T Consensus       174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~  253 (592)
T 3mca_A          174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD  253 (592)
T ss_dssp             CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence            4556899999999999999999997532  1100          000                 001111  22334455


Q ss_pred             ceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECCCcc---cH--HHHHHHHHHHHHhcCCCCc-EEEEEecccCCCCC
Q 006490           58 RVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQS---TL--SRLSSYWLPELRRLEIKVP-IIVAGCKLDLRGDH  131 (643)
Q Consensus        58 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~~~---s~--~~~~~~~~~~l~~~~~~~p-vilv~NK~D~~~~~  131 (643)
                      +..+.||||||+.++...+...+..+|++|+|+|+++..   ++  .......+..+...  ++| +|+|+||+|+....
T Consensus       254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l--gip~iIvviNKiDl~~~~  331 (592)
T 3mca_A          254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL--GISEIVVSVNKLDLMSWS  331 (592)
T ss_dssp             -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS--SCCCEEEEEECGGGGTTC
T ss_pred             CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc--CCCeEEEEEecccccccc
Confidence            688999999999998888888899999999999998642   11  11111233344444  566 99999999987532


Q ss_pred             ccchhhhhhhHHHHhh----cc---cceEEEeCcccCCChh
Q 006490          132 NATSLEEVMGPIMQQF----RE---IETCVECSATTMIQVP  165 (643)
Q Consensus       132 ~~~~~~~~~~~~~~~~----~~---~~~~~~~Sa~~~~gi~  165 (643)
                      .. ...+....+...+    +.   ..+++++||++|.||.
T Consensus       332 ~~-~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~  371 (592)
T 3mca_A          332 ED-RFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI  371 (592)
T ss_dssp             HH-HHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred             HH-HHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence            22 2222233333322    21   1268999999999998

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.57  E-value=1.7e-14  Score=154.17  Aligned_cols=149  Identities=19%  Similarity=0.269  Sum_probs=102.2

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCC------------CCCccc---------------------ceEEEEEEc
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENY------------APTTGE---------------------QYAVNVVDQ  467 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~------------~~t~~~---------------------~~~~~~v~~  467 (643)
                      +..++|+++|.+|+|||||+|+|++.......            .+|++.                     +.....+..
T Consensus        22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~  101 (434)
T 1zun_B           22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST  101 (434)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence            45689999999999999999999876422110            112211                     112223333


Q ss_pred             CCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCC-cEEEEEeCCCCC
Q 006490          468 PGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGV-PCLLIASKDDLK  546 (643)
Q Consensus       468 ~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~-pvilv~NK~Dl~  546 (643)
                        ....+.+|||+|++.+...  ...++..+|++|+|+|++++.. .+..+++..+...      +. |+++|+||+|+.
T Consensus       102 --~~~~~~iiDtpGh~~f~~~--~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~~~~~------~~~~iIvviNK~Dl~  170 (434)
T 1zun_B          102 --AKRKFIIADTPGHEQYTRN--MATGASTCDLAIILVDARYGVQ-TQTRRHSYIASLL------GIKHIVVAINKMDLN  170 (434)
T ss_dssp             --SSEEEEEEECCCSGGGHHH--HHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHHHHT------TCCEEEEEEECTTTT
T ss_pred             --CCceEEEEECCChHHHHHH--HHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc------CCCeEEEEEEcCcCC
Confidence              3457889999999888665  5678899999999999998754 3344454444433      44 699999999997


Q ss_pred             Ccc-c----cHHHHHHHHHHhC--C--CCcEEeeeccC-CHHHH
Q 006490          547 PYT-M----AVQDSARVTQELG--I--EPPIPVSMKSK-DLNNV  580 (643)
Q Consensus       547 ~~~-~----~~~~~~~~~~~~~--~--~~~~~vSa~~g-~i~~l  580 (643)
                      ... .    ..++..++.+.++  .  .+++++||++| |++++
T Consensus       171 ~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~  214 (434)
T 1zun_B          171 GFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK  214 (434)
T ss_dssp             TSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred             cccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence            621 1    2345566667777  2  25899999999 99874

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.57  E-value=9.9e-15  Score=164.10  Aligned_cols=164  Identities=15%  Similarity=0.169  Sum_probs=108.2

Q ss_pred             cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-CCccc--------ceEEEEEEcCCC--------------------
Q 006490          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGE--------QYAVNVVDQPGG--------------------  470 (643)
Q Consensus       420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~-~t~~~--------~~~~~~v~~~g~--------------------  470 (643)
                      .+..++|+|+|.+|+|||||+|+|+|..+..+.. |+|..        .........+|.                    
T Consensus        66 ~~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~  145 (695)
T 2j69_A           66 QQGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAE  145 (695)
T ss_dssp             HHCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHH
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHH
Confidence            3457999999999999999999999998776554 54421        111111110100                    


Q ss_pred             -------------------------c--EEEEEEecCCchhhhhh-hccHHhhccCCEEEEEEeCCChhhHHHHHHHHHH
Q 006490          471 -------------------------N--KKTLILQEIPEEGVKKI-LSNKEALASCDVTIFVYDSSDEYSWKRTKELLVE  522 (643)
Q Consensus       471 -------------------------~--~~~~i~d~~g~~~~~~~-~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~  522 (643)
                                               .  ..+.+|||+|....... ..+..++..||++|+|+|++++.+......|...
T Consensus       146 ~~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~  225 (695)
T 2j69_A          146 AKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENY  225 (695)
T ss_dssp             HHHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHH
T ss_pred             HHHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHH
Confidence                                     0  24678999996553321 1256788999999999999998776665555444


Q ss_pred             HHHhcCCCCCCCcEEEEEeCCCCCCcccc-H----------HHHHH-----HHHHhC-------CCCcEEeeec------
Q 006490          523 VARLGEDSGYGVPCLLIASKDDLKPYTMA-V----------QDSAR-----VTQELG-------IEPPIPVSMK------  573 (643)
Q Consensus       523 i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~----------~~~~~-----~~~~~~-------~~~~~~vSa~------  573 (643)
                      +...      +.|+++|+||+|+...... .          ..+..     +....+       ..++++|||+      
T Consensus       226 l~~~------~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~  299 (695)
T 2j69_A          226 IKGR------GLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRR  299 (695)
T ss_dssp             TTTS------CCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHH
T ss_pred             HHhh------CCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhh
Confidence            3322      6899999999998754310 0          01111     111112       1258999999      


Q ss_pred             --------cC-CHHHHHHHHHHHHh
Q 006490          574 --------SK-DLNNVFSRIIWAAE  589 (643)
Q Consensus       574 --------~g-~i~~l~~~l~~~~~  589 (643)
                              +| |++++++.+.+.+.
T Consensus       300 ~~~~~~~~~~~Gi~~L~~~L~~~l~  324 (695)
T 2j69_A          300 LKNPQADLDGTGFPKFMDSLNTFLT  324 (695)
T ss_dssp             HHCTTCCCTTSSHHHHHHHHHHHHH
T ss_pred             ccCchhhhhccCHHHHHHHHHHHHH
Confidence                    99 99999999988764

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.57  E-value=1.7e-14  Score=161.53  Aligned_cols=117  Identities=20%  Similarity=0.177  Sum_probs=85.7

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCC----------------CCe--eeCCcccCCceeEEEEeCCCC
Q 006490            8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVH----------------APT--RLPPDFYPDRVPVTIIDTSSS   69 (643)
Q Consensus         8 ~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~----------------~~~--~~~~~~~~~~~~~~i~Dt~G~   69 (643)
                      ...+..+|+|+|++|+|||||+++|++........+..                +.+  .....+...++.++||||||+
T Consensus         5 ~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~   84 (665)
T 2dy1_A            5 GGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGY   84 (665)
T ss_dssp             -CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCS
T ss_pred             ccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCc
Confidence            34566789999999999999999999544221111100                000  011223345788999999999


Q ss_pred             CcchhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCC
Q 006490           70 LENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLR  128 (643)
Q Consensus        70 ~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~  128 (643)
                      .++......+++.+|++++|+|+++.......  .++..+...  ++|+++|+||+|+.
T Consensus        85 ~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~--~~~~~~~~~--~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           85 GDFVGEIRGALEAADAALVAVSAEAGVQVGTE--RAWTVAERL--GLPRMVVVTKLDKG  139 (665)
T ss_dssp             GGGHHHHHHHHHHCSEEEEEEETTTCSCHHHH--HHHHHHHHT--TCCEEEEEECGGGC
T ss_pred             cchHHHHHHHHhhcCcEEEEEcCCcccchhHH--HHHHHHHHc--cCCEEEEecCCchh
Confidence            99888888999999999999998877654443  466666665  79999999999987

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.57  E-value=1e-14  Score=149.48  Aligned_cols=160  Identities=16%  Similarity=0.125  Sum_probs=98.6

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC----CC---CCeeeC-------------------------------
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPP----VH---APTRLP-------------------------------   51 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~----~~---~~~~~~-------------------------------   51 (643)
                      ....+|+|+|++|||||||+|+|++..+.+...+    ..   ..++..                               
T Consensus        22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (315)
T 1jwy_B           22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE  101 (315)
T ss_dssp             TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred             CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHH
Confidence            4457899999999999999999999886322110    00   011100                               


Q ss_pred             -------C---------------cccCCceeEEEEeCCCCCc-------------chhhhHHhhccCCEEEEEEECCCcc
Q 006490           52 -------P---------------DFYPDRVPVTIIDTSSSLE-------------NKGKLNEELKRADAVVLTYACNQQS   96 (643)
Q Consensus        52 -------~---------------~~~~~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~ad~il~v~d~~~~~   96 (643)
                             .               .....+..+.+|||||+..             +......+++.+|++++|+|..+..
T Consensus       102 i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~  181 (315)
T 1jwy_B          102 IIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTD  181 (315)
T ss_dssp             HHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSC
T ss_pred             HHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcc
Confidence                   0               0122446799999999864             3344557889999999999974332


Q ss_pred             -cHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhccc-ceEEE---eCccc---CCChhHHH
Q 006490           97 -TLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREI-ETCVE---CSATT---MIQVPDVF  168 (643)
Q Consensus        97 -s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~Sa~~---~~gi~~l~  168 (643)
                       ...... .+...+...  ++|+++|+||+|+......  ..+   .+...+... ..+++   +|+.+   +.|+.+++
T Consensus       182 ~~~~~~~-~i~~~~~~~--~~~~i~v~NK~Dl~~~~~~--~~~---~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~  253 (315)
T 1jwy_B          182 LANSDAL-QLAKEVDPE--GKRTIGVITKLDLMDKGTD--AME---VLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESL  253 (315)
T ss_dssp             STTCSHH-HHHHHHCSS--CSSEEEEEECTTSSCSSCC--CHH---HHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHH
T ss_pred             hhhhHHH-HHHHHhCCC--CCcEEEEEcCcccCCcchH--HHH---HHhCCCccCCCCeEEEecCChhhhccCCCHHHHH
Confidence             111111 355555544  7999999999998764331  111   111111111 13444   55556   79999999


Q ss_pred             HHHHHHHhC
Q 006490          169 YYAQKAVLH  177 (643)
Q Consensus       169 ~~i~~~~~~  177 (643)
                      +.+...+..
T Consensus       254 ~~~~~~~~~  262 (315)
T 1jwy_B          254 KSEILYFKN  262 (315)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHhC
Confidence            988887754

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.57  E-value=1.4e-15  Score=170.84  Aligned_cols=234  Identities=12%  Similarity=0.065  Sum_probs=141.4

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcC--CCCC-----------CCCC---CCCCee--eCCcccCCceeEEEEeCCCCC
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATE--SVPE-----------KVPP---VHAPTR--LPPDFYPDRVPVTIIDTSSSL   70 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~--~~~~-----------~~~~---~~~~~~--~~~~~~~~~~~~~i~Dt~G~~   70 (643)
                      ..+..+|+|+|++|+|||||+|+|+..  .+..           ++..   ..+.+.  ....+...++.++||||||+.
T Consensus         7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~   86 (693)
T 2xex_A            7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHV   86 (693)
T ss_dssp             STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCS
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCc
Confidence            345678999999999999999999852  2210           0000   000111  112234457889999999999


Q ss_pred             cchhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcc-
Q 006490           71 ENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE-  149 (643)
Q Consensus        71 ~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~-  149 (643)
                      ++...+..+++.+|++|+|+|+++..+.....  ++..+...  ++|+++|+||+|+....    ....++.+...++. 
T Consensus        87 df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~--~~~~~~~~--~~p~ilviNK~Dl~~~~----~~~~~~~l~~~l~~~  158 (693)
T 2xex_A           87 DFTVEVERSLRVLDGAVTVLDAQSGVEPQTET--VWRQATTY--GVPRIVFVNKMDKLGAN----FEYSVSTLHDRLQAN  158 (693)
T ss_dssp             SCCHHHHHHHHHCSEEEEEEETTTBSCHHHHH--HHHHHHHT--TCCEEEEEECTTSTTCC----HHHHHHHHHHHHCCC
T ss_pred             chHHHHHHHHHHCCEEEEEECCCCCCcHHHHH--HHHHHHHc--CCCEEEEEECCCccccc----hHHHHHHHHHHhCCC
Confidence            99888899999999999999999887776654  44456655  89999999999997642    33445555555543 


Q ss_pred             -cceEEEeCcccCCChhHHHHHHHHHHhCCC-C--CCCc-ccc-ccchHHH----HHHHHhhhhhcCCC-----CCCCCC
Q 006490          150 -IETCVECSATTMIQVPDVFYYAQKAVLHPT-A--PLFD-HDE-QTLKPRC----VRALKRIFIICDHD-----MDGALN  214 (643)
Q Consensus       150 -~~~~~~~Sa~~~~gi~~l~~~i~~~~~~~~-~--~~~~-~~~-~~~~~~~----~~~l~~~~~~~~~~-----~~~~l~  214 (643)
                       ....+++|+  +.|+..+++.+........ .  ..+. ... .......    .+.++.+....+..     .+..+.
T Consensus       159 ~~~~~ipisa--~~~~~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~r~~l~e~l~e~dd~l~e~~l~~~~~~  236 (693)
T 2xex_A          159 AAPIQLPIGA--EDEFEAIIDLVEMKCFKYTNDLGTEIEEIEIPEDHLDRAEEARASLIEAVAETSDELMEKYLGDEEIS  236 (693)
T ss_dssp             EEESEEEECC--GGGCCEEEETTTTEEEECCSSSSCSCEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHTTCCCC
T ss_pred             ceeEEeeccc--CCCcceeeeeecceeEEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhcCCCCC
Confidence             123678888  6666666554332211111 0  0000 000 0011111    11122111111100     123456


Q ss_pred             hHHHHHHhh----------hhcCCCCCHHHHHHHHHHHHhhccCCcCC
Q 006490          215 DAELNEFQV----------KCFNAPLQPAEIVGVKRVVQEKQHDGVND  252 (643)
Q Consensus       215 ~~el~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (643)
                      .+++.....          -.++.++...+++.+++.+.++.|+|.+.
T Consensus       237 ~~~~~~~l~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsP~~~  284 (693)
T 2xex_A          237 VSELKEAIRQATTNVEFYPVLCGTAFKNKGVQLMLDAVIDYLPSPLDV  284 (693)
T ss_dssp             HHHHHHHHHHHHHTTSCEEEEECBTTTTBSHHHHHHHHHHHSCCGGGS
T ss_pred             HHHHHHHHHHHHHhCCeeeEEEeecccCcCHHHHHHHHHHHCCCchhc
Confidence            666543322          15788899999999999999999998764

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.57  E-value=6.6e-15  Score=162.79  Aligned_cols=151  Identities=16%  Similarity=0.157  Sum_probs=102.1

Q ss_pred             cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-------------------------------CCcccceEEEEEEcC
Q 006490          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-------------------------------PTTGEQYAVNVVDQP  468 (643)
Q Consensus       420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~-------------------------------~t~~~~~~~~~v~~~  468 (643)
                      .+..++|+|+|.+|+|||||+|+|++........                               +.++.+.....+...
T Consensus       164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~  243 (611)
T 3izq_1          164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH  243 (611)
T ss_dssp             CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred             cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence            3457899999999999999999999875433221                               111222223334443


Q ss_pred             CCcEEEEEEecCCchhhhhhhccHHhhccCCEEEEEEeCCChhh---H---HHHHHHHHHHHHhcCCCCCC-CcEEEEEe
Q 006490          469 GGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYS---W---KRTKELLVEVARLGEDSGYG-VPCLLIAS  541 (643)
Q Consensus       469 g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv~D~s~~~s---~---~~~~~~~~~i~~~~~~~~~~-~pvilv~N  541 (643)
                        ...+.+|||+|++.+...  +..++..||++|+|+|++++..   |   .+....+..+...      + .|+|+|+|
T Consensus       244 --~~~~~iiDTPG~e~f~~~--~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~l------gi~~iIVVvN  313 (611)
T 3izq_1          244 --RANFTIVDAPGHRDFVPN--AIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL------GIHNLIIAMN  313 (611)
T ss_dssp             --SCEEEEEECCSSSCHHHH--HTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTT------TCCEEEEEEE
T ss_pred             --CceEEEEECCCCcccHHH--HHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHc------CCCeEEEEEe
Confidence              457788999999887765  6778899999999999997521   0   1222222222222      4 45999999


Q ss_pred             CCCCCCccc-----cHHHHHHHHHHhCC----CCcEEeeeccC-CHHHH
Q 006490          542 KDDLKPYTM-----AVQDSARVTQELGI----EPPIPVSMKSK-DLNNV  580 (643)
Q Consensus       542 K~Dl~~~~~-----~~~~~~~~~~~~~~----~~~~~vSa~~g-~i~~l  580 (643)
                      |+|+.....     ..+....+...+++    .++++|||++| |+.++
T Consensus       314 KiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          314 KMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             CTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             cccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence            999986221     13455556666665    25899999999 99865

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.56  E-value=1.4e-14  Score=162.93  Aligned_cols=163  Identities=17%  Similarity=0.151  Sum_probs=108.4

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCCCCCeee--------CCcc------------------cCCc---
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEK--VPPVHAPTRL--------PPDF------------------YPDR---   58 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~--~~~~~~~~~~--------~~~~------------------~~~~---   58 (643)
                      ++.++|+|+|++|||||||+|+|++..+.+.  .|++...+.+        ...+                  ...+   
T Consensus        67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~  146 (695)
T 2j69_A           67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA  146 (695)
T ss_dssp             HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence            3578999999999999999999999875332  3333111110        0000                  0000   


Q ss_pred             ---------------------------eeEEEEeCCCCCcc---hhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHH
Q 006490           59 ---------------------------VPVTIIDTSSSLEN---KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPE  108 (643)
Q Consensus        59 ---------------------------~~~~i~Dt~G~~~~---~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~  108 (643)
                                                 ..+.||||||+...   ...+..+++.+|++|+|+|++++.+..+.. .|.+.
T Consensus       147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~-~l~~~  225 (695)
T 2j69_A          147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERR-YLENY  225 (695)
T ss_dssp             HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHH-HHHHH
T ss_pred             HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHH-HHHHH
Confidence                                       46999999997642   344557889999999999999887777665 36555


Q ss_pred             HHhcCCCCcEEEEEecccCCCCCccchhh---h------hhh-H----HHHhhc------ccceEEEeCcc---------
Q 006490          109 LRRLEIKVPIIVAGCKLDLRGDHNATSLE---E------VMG-P----IMQQFR------EIETCVECSAT---------  159 (643)
Q Consensus       109 l~~~~~~~pvilv~NK~D~~~~~~~~~~~---~------~~~-~----~~~~~~------~~~~~~~~Sa~---------  159 (643)
                      +...  +.|+++|+||+|+...... ..+   +      .+. .    +....+      ...++++|||+         
T Consensus       226 l~~~--~~~iiiVlNK~Dl~~~~~~-~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~  302 (695)
T 2j69_A          226 IKGR--GLTVFFLVNAWDQVRESLI-DPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKN  302 (695)
T ss_dssp             TTTS--CCCEEEEEECGGGGGGGCS-STTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHC
T ss_pred             HHhh--CCCEEEEEECccccccccc-ChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccC
Confidence            5544  7899999999998643211 000   0      011 1    111111      11258999999         


Q ss_pred             -----cCCChhHHHHHHHHHHh
Q 006490          160 -----TMIQVPDVFYYAQKAVL  176 (643)
Q Consensus       160 -----~~~gi~~l~~~i~~~~~  176 (643)
                           +|.|++++++.+.+.+.
T Consensus       303 ~~~~~~~~Gi~~L~~~L~~~l~  324 (695)
T 2j69_A          303 PQADLDGTGFPKFMDSLNTFLT  324 (695)
T ss_dssp             TTCCCTTSSHHHHHHHHHHHHH
T ss_pred             chhhhhccCHHHHHHHHHHHHH
Confidence                 99999999999988764

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.56  E-value=2.2e-14  Score=161.14  Aligned_cols=126  Identities=14%  Similarity=0.179  Sum_probs=88.3

Q ss_pred             CCCCCCCCCCCccEEEEEcCCCCCHHHHHHHHhcCC--CCC--C-CCC-----------CCCCee--eCCcccCCceeEE
Q 006490            1 MPGGSGSSSRTGVRVVVVGDRGTGKSSLIAAAATES--VPE--K-VPP-----------VHAPTR--LPPDFYPDRVPVT   62 (643)
Q Consensus         1 m~~~~~~~~~~~~kI~lvG~~~vGKSsL~n~l~~~~--~~~--~-~~~-----------~~~~~~--~~~~~~~~~~~~~   62 (643)
                      |+........+..+|+|+|++|+|||||+++|+...  +..  . ..+           ..+.+.  ....+...++.++
T Consensus         1 M~~~l~~~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~   80 (691)
T 1dar_A            1 MAVKVEYDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRIN   80 (691)
T ss_dssp             CCTTCCCCGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEE
T ss_pred             CCccccCccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEE
Confidence            443333334556899999999999999999998421  100  0 000           000111  1122334578999


Q ss_pred             EEeCCCCCcchhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCC
Q 006490           63 IIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD  130 (643)
Q Consensus        63 i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~  130 (643)
                      ||||||+.++...+..+++.+|++|+|+|+++..+.+... .|. .+...  ++|+++|+||+|+...
T Consensus        81 liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~-~~~-~~~~~--~~p~ivviNKiD~~~~  144 (691)
T 1dar_A           81 IIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSET-VWR-QAEKY--KVPRIAFANKMDKTGA  144 (691)
T ss_dssp             EECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHH-HHH-HHHHT--TCCEEEEEECTTSTTC
T ss_pred             EEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHH-HHH-HHHHc--CCCEEEEEECCCcccC
Confidence            9999999999888999999999999999999988777654 243 45555  8999999999998754

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.55  E-value=3.3e-14  Score=154.51  Aligned_cols=117  Identities=12%  Similarity=0.075  Sum_probs=83.0

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCC-----------CC---------CCCCee--eCCcccCCceeEEEEeCC
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKV-----------PP---------VHAPTR--LPPDFYPDRVPVTIIDTS   67 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~-----------~~---------~~~~~~--~~~~~~~~~~~~~i~Dt~   67 (643)
                      .+..+|+|+|++|+|||||+++|+........           ..         ..+.+.  ....+...++.++|||||
T Consensus        11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP   90 (529)
T 2h5e_A           11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP   90 (529)
T ss_dssp             HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred             cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence            34579999999999999999999964211100           00         000000  112244567899999999


Q ss_pred             CCCcchhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCC
Q 006490           68 SSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD  130 (643)
Q Consensus        68 G~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~  130 (643)
                      |+.++...+..+++.+|++|+|+|+++......  ..++..+...  ++|+++|+||+|+...
T Consensus        91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t--~~~~~~~~~~--~ipiivviNK~Dl~~~  149 (529)
T 2h5e_A           91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT--RKLMEVTRLR--DTPILTFMNKLDRDIR  149 (529)
T ss_dssp             CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH--HHHHHHHTTT--TCCEEEEEECTTSCCS
T ss_pred             CChhHHHHHHHHHHHCCEEEEEEeCCccchHHH--HHHHHHHHHc--CCCEEEEEcCcCCccc
Confidence            999988888899999999999999988754333  2355555544  8999999999998754

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.55  E-value=6.8e-15  Score=150.75  Aligned_cols=160  Identities=16%  Similarity=0.150  Sum_probs=94.9

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-CCcccc----eE-----------------------------------
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQ----YA-----------------------------------  461 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~-~t~~~~----~~-----------------------------------  461 (643)
                      ..++|+|+|.+|||||||+|+|++..+..... .++..-    ..                                   
T Consensus        23 ~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  102 (315)
T 1jwy_B           23 DLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEI  102 (315)
T ss_dssp             CCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHH
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHHH
Confidence            45799999999999999999999988632211 111100    00                                   


Q ss_pred             -------------------EEEEEcCCCcEEEEEEecCCchh-------------hhhhhccHHhhccCCEEEEEEeCCC
Q 006490          462 -------------------VNVVDQPGGNKKTLILQEIPEEG-------------VKKILSNKEALASCDVTIFVYDSSD  509 (643)
Q Consensus       462 -------------------~~~v~~~g~~~~~~i~d~~g~~~-------------~~~~~~~~~~~~~ad~illv~D~s~  509 (643)
                                         ...+..+ ....+.+|||+|...             +...  +..++..+|++++|+|+++
T Consensus       103 ~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~iilvvd~~~  179 (315)
T 1jwy_B          103 IRDTDRMTGKNKGISAQPINLKIYSP-HVVNLTLVDLPGITKVPVGDQPTDIEQQIRRM--VMAYIKKQNAIIVAVTPAN  179 (315)
T ss_dssp             HHHCC--------CCCCCEEEEEEET-TSCSEEEEECCCCC---------CSHHHHHHH--HHHHHHSTTEEEEEEEESS
T ss_pred             HHHHHHhcCCCCCccCccEEEEEecC-CCCCcEEEECCCCccCCCCCCchhHHHHHHHH--HHHHHcCCCeEEEEEEecC
Confidence                               0001122 234577899999643             2222  6778899999999999743


Q ss_pred             -hhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccc-cHHHHHHHHHH--hCCCCcEEeeecc---C-CHHHHH
Q 006490          510 -EYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQE--LGIEPPIPVSMKS---K-DLNNVF  581 (643)
Q Consensus       510 -~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~-~~~~~~~~~~~--~~~~~~~~vSa~~---g-~i~~l~  581 (643)
                       .........+...+...      +.|+++|+||+|+..... ..+..+.....  .++.++..+||++   + |+.+++
T Consensus       180 ~~~~~~~~~~i~~~~~~~------~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~  253 (315)
T 1jwy_B          180 TDLANSDALQLAKEVDPE------GKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESL  253 (315)
T ss_dssp             SCSTTCSHHHHHHHHCSS------CSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHH
T ss_pred             cchhhhHHHHHHHHhCCC------CCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHH
Confidence             32111112233333221      799999999999986443 12221110001  1222345556666   7 899999


Q ss_pred             HHHHHHHhC
Q 006490          582 SRIIWAAEH  590 (643)
Q Consensus       582 ~~l~~~~~~  590 (643)
                      +.+.+.+..
T Consensus       254 ~~~~~~~~~  262 (315)
T 1jwy_B          254 KSEILYFKN  262 (315)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHhC
Confidence            999988754

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.55  E-value=2.6e-14  Score=160.80  Aligned_cols=236  Identities=11%  Similarity=0.069  Sum_probs=134.4

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCC--CCCC---CCC-----------CCCCee--eCCcccCC-------ceeEEE
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATES--VPEK---VPP-----------VHAPTR--LPPDFYPD-------RVPVTI   63 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~--~~~~---~~~-----------~~~~~~--~~~~~~~~-------~~~~~i   63 (643)
                      ..+..+|+|+|++|+|||||+++|+...  +...   .++           ..+.+.  ....+...       .+.++|
T Consensus         7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~l   86 (704)
T 2rdo_7            7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINI   86 (704)
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEE
Confidence            3456789999999999999999997532  1110   000           000111  11112222       388999


Q ss_pred             EeCCCCCcchhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHH
Q 006490           64 IDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPI  143 (643)
Q Consensus        64 ~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~  143 (643)
                      |||||+.++...+..+++.+|++|+|+|+++....+...  ++..+...  ++|+++|+||+|+...+    ..+.++.+
T Consensus        87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~--~~~~~~~~--~ip~ilviNKiD~~~~~----~~~~~~~l  158 (704)
T 2rdo_7           87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSET--VWRQANKY--KVPRIAFVNKMDRMGAN----FLKVVNQI  158 (704)
T ss_pred             EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHH--HHHHHHHc--CCCEEEEEeCCCccccc----HHHHHHHH
Confidence            999999999888999999999999999999876655443  34445544  79999999999987642    34555666


Q ss_pred             HHhhcccceEEEeCcccCCChhHHHHHHHHHHh-CCC---CCCCc-----ccccc-chHHHHHHHHhhhhhcCCC-----
Q 006490          144 MQQFREIETCVECSATTMIQVPDVFYYAQKAVL-HPT---APLFD-----HDEQT-LKPRCVRALKRIFIICDHD-----  208 (643)
Q Consensus       144 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~-~~~---~~~~~-----~~~~~-~~~~~~~~l~~~~~~~~~~-----  208 (643)
                      ...++.....+.+....+.++..+++.+..... +..   ...+.     ..... ......+.++.+....+..     
T Consensus       159 ~~~l~~~~~~~~~Pi~~~~~f~g~~dl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~ae~dd~l~e~~l  238 (704)
T 2rdo_7          159 KTRLGANPVPLQLAIGAEEHFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANEWHQNLIESAAEASEELMEKYL  238 (704)
T ss_pred             HHHhCCCceeEEccccccccccceeehhhhhhhcccCccCCcceEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHh
Confidence            666654221222222222222222222222211 111   00000     00000 0011112222222211111     


Q ss_pred             CCCCCChHHHHHHhh----------hhcCCCCCHHHHHHHHHHHHhhccCCcCC
Q 006490          209 MDGALNDAELNEFQV----------KCFNAPLQPAEIVGVKRVVQEKQHDGVND  252 (643)
Q Consensus       209 ~~~~l~~~el~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (643)
                      ....+..+++.....          -.++.++...+++.+++.+..+.|+|.+.
T Consensus       239 ~~~~l~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~lPsP~~~  292 (704)
T 2rdo_7          239 GGEELTEAEIKGALRQRVLNNEIILVTCGSAFKNKGVQAMLDAVIDYLPSPVDV  292 (704)
T ss_pred             cCCCCCHHHHHHHHHHHHHhCCeeEEEEeecccCccHHHHHHHHHHHCCChhhc
Confidence            123456666543332          24778889999999999999999998764

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.55  E-value=1.1e-14  Score=145.48  Aligned_cols=120  Identities=17%  Similarity=0.113  Sum_probs=83.5

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhH-------H--
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATESVP--EKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLN-------E--   78 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~--   78 (643)
                      ...++|+++|.+|||||||+|+|++..+.  ...+++... .....+...+..+.+|||||+.++.....       .  
T Consensus        37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~  115 (270)
T 1h65_A           37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPR-PVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFL  115 (270)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSS-CEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccee-eEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence            45789999999999999999999998753  223332211 12233455678899999999876543222       1  


Q ss_pred             hhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcC-CC--CcEEEEEecccCCCCC
Q 006490           79 ELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLE-IK--VPIIVAGCKLDLRGDH  131 (643)
Q Consensus        79 ~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~-~~--~pvilv~NK~D~~~~~  131 (643)
                      ..+.+|++|+|+|++.. ++......|+..+.... .+  +|+++|+||+|+...+
T Consensus       116 ~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~  170 (270)
T 1h65_A          116 LDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD  170 (270)
T ss_dssp             TTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred             hcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence            13479999999998764 34444445888776542 22  6999999999987543

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.55  E-value=1.3e-15  Score=158.24  Aligned_cols=159  Identities=17%  Similarity=0.158  Sum_probs=81.5

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCC-CCCCCC--------CCCCCeeeCCccc--CCceeEEEEeCCCC-------Ccch
Q 006490           12 GVRVVVVGDRGTGKSSLIAAAATES-VPEKVP--------PVHAPTRLPPDFY--PDRVPVTIIDTSSS-------LENK   73 (643)
Q Consensus        12 ~~kI~lvG~~~vGKSsL~n~l~~~~-~~~~~~--------~~~~~~~~~~~~~--~~~~~~~i~Dt~G~-------~~~~   73 (643)
                      .++|+|+|++|||||||+|+|++.. +.....        ++.+.......+.  .....+.+|||||+       +.+.
T Consensus        37 ~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~  116 (361)
T 2qag_A           37 EFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK  116 (361)
T ss_dssp             EECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------C
T ss_pred             CEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHH
Confidence            4789999999999999999987765 322211        1111111111222  22457999999999       4444


Q ss_pred             hhhH-------HhhccCCEE-----------EEEEECCC-cccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccc
Q 006490           74 GKLN-------EELKRADAV-----------VLTYACNQ-QSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNAT  134 (643)
Q Consensus        74 ~~~~-------~~~~~ad~i-----------l~v~d~~~-~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~  134 (643)
                      ....       .+++.++++           ++||++++ ..++..+...|++.+   ..++|+|+|+||+|+.......
T Consensus       117 ~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l---~~~~piIlV~NK~Dl~~~~ev~  193 (361)
T 2qag_A          117 TIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI---HNKVNIVPVIAKADTLTLKERE  193 (361)
T ss_dssp             CTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT---CS-SCEEEEEECCSSSCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh---ccCCCEEEEEECCCCCCHHHHH
Confidence            4444       555544332           24444444 455666554465554   3579999999999997643321


Q ss_pred             hhhhhhhHHHHhhcccceEEEeCcccCCChhHHHHHHHHHHh
Q 006490          135 SLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVL  176 (643)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~  176 (643)
                      ...+.+..+...++  .+++++||++|.| ++.|..+.+.+.
T Consensus       194 ~~k~~i~~~~~~~~--i~~~~~Sa~~~~~-~e~~~~l~~~i~  232 (361)
T 2qag_A          194 RLKKRILDEIEEHN--IKIYHLPDAESDE-DEDFKEQTRLLK  232 (361)
T ss_dssp             HHHHHHHHHTTCC---CCSCCCC----------CHHHHHHHH
T ss_pred             HHHHHHHHHHHHCC--CCEEeCCCcCCCc-chhHHHHHHHHH
Confidence            11123344444443  3689999999998 777777777664

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.54  E-value=1.3e-14  Score=159.33  Aligned_cols=156  Identities=14%  Similarity=0.135  Sum_probs=101.5

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcC----------C------CcEEEEEEecCCchhh
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQP----------G------GNKKTLILQEIPEEGV  485 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~----------g------~~~~~~i~d~~g~~~~  485 (643)
                      +.++|+|+|.+|+|||||+++|++..+.......++.......+...          +      ....+.+|||+|++.+
T Consensus         4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F   83 (594)
T 1g7s_A            4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF   83 (594)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence            35689999999999999999999865433221111111111122110          0      1125788999999888


Q ss_pred             hhhhccHHhhccCCEEEEEEeCCC---hhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccc------------
Q 006490          486 KKILSNKEALASCDVTIFVYDSSD---EYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM------------  550 (643)
Q Consensus       486 ~~~~~~~~~~~~ad~illv~D~s~---~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~------------  550 (643)
                      ..+  ...++..||++|+|+|+++   +.+++.+    ..+...      ++|+++|+||+|+.....            
T Consensus        84 ~~~--~~r~~~~aD~aILVvDa~~Gv~~qT~e~l----~~l~~~------~vPiIVViNKiDl~~~~~~~~~~~~~e~sa  151 (594)
T 1g7s_A           84 TTL--RKRGGALADLAILIVDINEGFKPQTQEAL----NILRMY------RTPFVVAANKIDRIHGWRVHEGRPFMETFS  151 (594)
T ss_dssp             TTS--BCSSSBSCSEEEEEEETTTCCCHHHHHHH----HHHHHT------TCCEEEEEECGGGSTTCCCCTTCCHHHHHT
T ss_pred             HHH--HHHHHhhCCEEEEEEECCCCccHhHHHHH----HHHHHc------CCeEEEEecccccccccccccCCchHHHHH
Confidence            776  5667899999999999999   4444332    223333      899999999999964210            


Q ss_pred             --c-------HHHHHHHH---HHhCC--------------CCcEEeeeccC-CHHHHHHHHHHHHh
Q 006490          551 --A-------VQDSARVT---QELGI--------------EPPIPVSMKSK-DLNNVFSRIIWAAE  589 (643)
Q Consensus       551 --~-------~~~~~~~~---~~~~~--------------~~~~~vSa~~g-~i~~l~~~l~~~~~  589 (643)
                        .       .+...++.   ...++              .+++++||++| |+++++++|...+.
T Consensus       152 ~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~  217 (594)
T 1g7s_A          152 KQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ  217 (594)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence              0       01111111   22222              16899999999 99999999998764

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.54  E-value=3e-14  Score=136.71  Aligned_cols=158  Identities=13%  Similarity=0.065  Sum_probs=97.3

Q ss_pred             cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchh----------hhhhh
Q 006490          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG----------VKKIL  489 (643)
Q Consensus       420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~----------~~~~~  489 (643)
                      .....+|+|+|++|||||||+|+|++..+.....|+.+.......+...+   ...+||++|...          +... 
T Consensus        23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~-   98 (210)
T 1pui_A           23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRA-   98 (210)
T ss_dssp             CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHH-
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHH-
Confidence            34568999999999999999999999874333334433322223333332   345789999632          1211 


Q ss_pred             ccHHhh---ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc---HHHHHHHHHHhC
Q 006490          490 SNKEAL---ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA---VQDSARVTQELG  563 (643)
Q Consensus       490 ~~~~~~---~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~---~~~~~~~~~~~~  563 (643)
                       ...++   ..+|++++|+|++++.++.. ......+...      ++|+++|+||+|+....+.   ...+..++...+
T Consensus        99 -~~~~~~~~~~~~~~~~v~d~~~~~~~~~-~~~~~~~~~~------~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~  170 (210)
T 1pui_A           99 -LGEYLEKRQSLQGLVVLMDIRHPLKDLD-QQMIEWAVDS------NIAVLVLLTKADKLASGARKAQLNMVREAVLAFN  170 (210)
T ss_dssp             -HHHHHHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHHHT------TCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGC
T ss_pred             -HHHHHHhhhcccEEEEEEECCCCCchhH-HHHHHHHHHc------CCCeEEEEecccCCCchhHHHHHHHHHHHHHhcC
Confidence             11222   57899999999998765432 1222222222      7899999999998764322   234444444444


Q ss_pred             C-CCcEEeeeccC-CHHHHHHHHHHHHh
Q 006490          564 I-EPPIPVSMKSK-DLNNVFSRIIWAAE  589 (643)
Q Consensus       564 ~-~~~~~vSa~~g-~i~~l~~~l~~~~~  589 (643)
                      . ..++++||+++ |++++++.|.+...
T Consensus       171 ~~~~~~~~Sal~~~~~~~l~~~l~~~~~  198 (210)
T 1pui_A          171 GDVQVETFSSLKKQGVDKLRQKLDTWFS  198 (210)
T ss_dssp             SCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred             CCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence            2 24789999999 99999999998764

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.54  E-value=2.1e-14  Score=163.90  Aligned_cols=160  Identities=13%  Similarity=0.077  Sum_probs=109.2

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCC-------CCC--CCC-----CCcccceEEEEEEcCCCcEEEEEEecCCchhhh
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERP-------FSE--NYA-----PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK  486 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~-------~~~--~~~-----~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~  486 (643)
                      ...++|+++|.+|+|||||+++|++..       +..  ..+     .+.+.+.....+...+....+.+|||+|++.+.
T Consensus       294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~  373 (1289)
T 3avx_A          294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYV  373 (1289)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHH
T ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHH
Confidence            456899999999999999999998741       000  000     111111111112222245678899999999887


Q ss_pred             hhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCc-EEEEEeCCCCCCccc----cHHHHHHHHHH
Q 006490          487 KILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVP-CLLIASKDDLKPYTM----AVQDSARVTQE  561 (643)
Q Consensus       487 ~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~p-vilv~NK~Dl~~~~~----~~~~~~~~~~~  561 (643)
                      ..  +...+..+|++|+|+|++++... +..+++..+...      ++| +|+|+||+|+.....    ..++..++.+.
T Consensus       374 ~~--mi~gas~AD~aILVVDAtdGv~~-QTrEhL~ll~~l------gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~  444 (1289)
T 3avx_A          374 KN--MITGAAQMDGAILVVAATDGPMP-QTREHILLGRQV------GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQ  444 (1289)
T ss_dssp             HH--HHHTSCCCSEEEEEEETTTCSCT-THHHHHHHHHHH------TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             HH--HHHHHhhCCEEEEEEcCCccCcH-HHHHHHHHHHHc------CCCeEEEEEeecccccchhhHHHHHHHHHHHHHh
Confidence            65  67788999999999999987543 344555555444      788 789999999986322    13456677777


Q ss_pred             hCC----CCcEEeeeccC-C--------HHHHHHHHHHHHh
Q 006490          562 LGI----EPPIPVSMKSK-D--------LNNVFSRIIWAAE  589 (643)
Q Consensus       562 ~~~----~~~~~vSa~~g-~--------i~~l~~~l~~~~~  589 (643)
                      +++    .+++++||++| +        +.++++.|.+.+.
T Consensus       445 ~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip  485 (1289)
T 3avx_A          445 YDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP  485 (1289)
T ss_dssp             TTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred             ccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence            775    36999999998 3        7888888877654

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.54  E-value=1.7e-14  Score=153.97  Aligned_cols=150  Identities=15%  Similarity=0.179  Sum_probs=101.3

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcC--CCCCCC-----------------------------CCCcccceEEEEEEcCC
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLER--PFSENY-----------------------------APTTGEQYAVNVVDQPG  469 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~--~~~~~~-----------------------------~~t~~~~~~~~~v~~~g  469 (643)
                      +..++|+++|.+|+|||||+++|++.  .+...+                             ...++.+.....++.  
T Consensus         4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~--   81 (435)
T 1jny_A            4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFET--   81 (435)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEEC--
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEec--
Confidence            34689999999999999999999864  221100                             111122222223444  


Q ss_pred             CcEEEEEEecCCchhhhhhhccHHhhccCCEEEEEEeCCChhhHHHHH-------HHHHHHHHhcCCCCCCC-cEEEEEe
Q 006490          470 GNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTK-------ELLVEVARLGEDSGYGV-PCLLIAS  541 (643)
Q Consensus       470 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~-------~~~~~i~~~~~~~~~~~-pvilv~N  541 (643)
                      ....+.+|||+|++.+...  +..++..+|++|+|+|+++ .+|+...       +.+..+...      +. |+++|+|
T Consensus        82 ~~~~~~iiDtpG~~~f~~~--~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~------~~~~iivviN  152 (435)
T 1jny_A           82 KKYFFTIIDAPGHRDFVKN--MITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTM------GLDQLIVAVN  152 (435)
T ss_dssp             SSCEEEECCCSSSTTHHHH--HHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHT------TCTTCEEEEE
T ss_pred             CCeEEEEEECCCcHHHHHH--HHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHc------CCCeEEEEEE
Confidence            3457889999999988776  6778999999999999998 5666433       222222222      44 6999999


Q ss_pred             CCCCCCcc-------ccHHHHHHHHHHhCC----CCcEEeeeccC-CHHHHH
Q 006490          542 KDDLKPYT-------MAVQDSARVTQELGI----EPPIPVSMKSK-DLNNVF  581 (643)
Q Consensus       542 K~Dl~~~~-------~~~~~~~~~~~~~~~----~~~~~vSa~~g-~i~~l~  581 (643)
                      |+|+....       ...+++.++++.+++    .+++++||++| |+.+++
T Consensus       153 K~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~  204 (435)
T 1jny_A          153 KMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKS  204 (435)
T ss_dssp             CGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCC
T ss_pred             cccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccccc
Confidence            99997621       124567777777775    35899999999 997544

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.54  E-value=6.6e-15  Score=158.36  Aligned_cols=156  Identities=15%  Similarity=0.111  Sum_probs=90.4

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCC--CC------------------------CCCCC---CCCCee--eCCcccCCc
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATES--VP------------------------EKVPP---VHAPTR--LPPDFYPDR   58 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~--~~------------------------~~~~~---~~~~~~--~~~~~~~~~   58 (643)
                      ++.++|+++|++++|||||+++|+...  +.                        .+...   ..+.|.  ....+..++
T Consensus        41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~  120 (467)
T 1r5b_A           41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH  120 (467)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred             CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence            456899999999999999999997522  11                        00000   001111  112344567


Q ss_pred             eeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECCCcc---cHH---HHHHHHHHHHHhcCCCCc-EEEEEecccCCCCC
Q 006490           59 VPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQS---TLS---RLSSYWLPELRRLEIKVP-IIVAGCKLDLRGDH  131 (643)
Q Consensus        59 ~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~~~---s~~---~~~~~~~~~l~~~~~~~p-vilv~NK~D~~~~~  131 (643)
                      ..+.||||||+++|...+...+..+|++|+|+|+++..   +++   ... ..+..+...  ++| +|+|+||+|+....
T Consensus       121 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~-e~l~~~~~~--~vp~iivviNK~Dl~~~~  197 (467)
T 1r5b_A          121 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTR-EHAVLARTQ--GINHLVVVINKMDEPSVQ  197 (467)
T ss_dssp             EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHH-HHHHHHHHT--TCSSEEEEEECTTSTTCS
T ss_pred             eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHH-HHHHHHHHc--CCCEEEEEEECccCCCcc
Confidence            88999999999999888888899999999999998762   221   111 122233333  677 99999999996421


Q ss_pred             --cc--chhhhhhhHHHHhh-cc----cceEEEeCcccCCChhHHH
Q 006490          132 --NA--TSLEEVMGPIMQQF-RE----IETCVECSATTMIQVPDVF  168 (643)
Q Consensus       132 --~~--~~~~~~~~~~~~~~-~~----~~~~~~~Sa~~~~gi~~l~  168 (643)
                        ..  ....+.+..+...+ +.    ..+++++||++|.|+.+++
T Consensus       198 ~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          198 WSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             ccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence              10  01122334444444 21    1368999999999998766

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.53  E-value=3.1e-15  Score=155.38  Aligned_cols=159  Identities=13%  Similarity=0.129  Sum_probs=81.4

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCCCC-CC--------CCcccceEEEEEEcCCCcEEEEEEecCCc-------hh
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSEN-YA--------PTTGEQYAVNVVDQPGGNKKTLILQEIPE-------EG  484 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~-~~--------~t~~~~~~~~~v~~~g~~~~~~i~d~~g~-------~~  484 (643)
                      ...++|+|+|++|+|||||+|+|++...... +.        +|.+.......+...|....+.+|||+|.       +.
T Consensus        35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~  114 (361)
T 2qag_A           35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC  114 (361)
T ss_dssp             CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence            3458999999999999999999887543322 11        23222222222333333456789999998       44


Q ss_pred             hhhhhc-----cHHhhccC-------------CEEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCC
Q 006490          485 VKKILS-----NKEALASC-------------DVTIFVYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDL  545 (643)
Q Consensus       485 ~~~~~~-----~~~~~~~a-------------d~illv~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~pvilv~NK~Dl  545 (643)
                      +..+..     ...+++.+             |+++++++.+ ..++.... .++..+   ..    ++|+|+|+||+|+
T Consensus       115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l---~~----~~piIlV~NK~Dl  186 (361)
T 2qag_A          115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAI---HN----KVNIVPVIAKADT  186 (361)
T ss_dssp             -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHT---CS-----SCEEEEEECCSS
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHh---cc----CCCEEEEEECCCC
Confidence            444311     01344333             3455555542 23334333 343333   11    7999999999999


Q ss_pred             CCccccH---HHHHHHHHHhCCCCcEEeeeccC-CHHHHHHHHHHHHh
Q 006490          546 KPYTMAV---QDSARVTQELGIEPPIPVSMKSK-DLNNVFSRIIWAAE  589 (643)
Q Consensus       546 ~~~~~~~---~~~~~~~~~~~~~~~~~vSa~~g-~i~~l~~~l~~~~~  589 (643)
                      .......   +.+..+++..+++ ++++||++| | ++.|..+.+.+.
T Consensus       187 ~~~~ev~~~k~~i~~~~~~~~i~-~~~~Sa~~~~~-~e~~~~l~~~i~  232 (361)
T 2qag_A          187 LTLKERERLKKRILDEIEEHNIK-IYHLPDAESDE-DEDFKEQTRLLK  232 (361)
T ss_dssp             SCHHHHHHHHHHHHHHTTCC-CC-SCCCC----------CHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCC-EEeCCCcCCCc-chhHHHHHHHHH
Confidence            8755442   3555666666775 999999999 8 777777776653

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.53  E-value=4.1e-16  Score=166.91  Aligned_cols=156  Identities=15%  Similarity=0.182  Sum_probs=103.7

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i  501 (643)
                      +..+|+++|.+++|||||+++|.+..+.....++++.+.....+.+++  ..+.+|||+|++.+..+  +...+..+|++
T Consensus         3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~--~~~~~~~aD~a   78 (501)
T 1zo1_I            3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSM--RARGAQATDIV   78 (501)
T ss_dssp             CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTS--BCSSSBSCSSE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHH--HHHHHhhCCEE
Confidence            456899999999999999999998655433333222222222334443  35678999999988776  56778999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcc--ccHHHH---HHHHHHhC-CCCcEEeeeccC
Q 006490          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT--MAVQDS---ARVTQELG-IEPPIPVSMKSK  575 (643)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~--~~~~~~---~~~~~~~~-~~~~~~vSa~~g  575 (643)
                      ++|+|++++...+ ..+.+..+...      +.|+++++||+|+....  ......   ..+.+.++ ..+++++||++|
T Consensus        79 ILVVda~~g~~~q-T~e~l~~~~~~------~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG  151 (501)
T 1zo1_I           79 VLVVAADDGVMPQ-TIEAIQHAKAA------QVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAG  151 (501)
T ss_dssp             EEEEETTTBSCTT-THHHHHHHHHT------TCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTC
T ss_pred             EEEeecccCccHH-HHHHHHHHHhc------CceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeec
Confidence            9999999853322 12223333333      79999999999997521  111110   00111222 125899999999


Q ss_pred             -CHHHHHHHHHHHH
Q 006490          576 -DLNNVFSRIIWAA  588 (643)
Q Consensus       576 -~i~~l~~~l~~~~  588 (643)
                       |++++++.+....
T Consensus       152 ~gI~eLle~I~~~~  165 (501)
T 1zo1_I          152 TGIDELLDAILLQA  165 (501)
T ss_dssp             TTCTTHHHHTTTTC
T ss_pred             cCcchhhhhhhhhh
Confidence             9999999987643

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.53  E-value=2.4e-14  Score=153.62  Aligned_cols=149  Identities=14%  Similarity=0.190  Sum_probs=101.2

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcC--CCCC----------------------CC-------CCCcccceEEEEEEcCCC
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLER--PFSE----------------------NY-------APTTGEQYAVNVVDQPGG  470 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~--~~~~----------------------~~-------~~t~~~~~~~~~v~~~g~  470 (643)
                      ..++|+++|.+|+|||||+|+|++.  .+..                      ..       ...++.+.....++..  
T Consensus         6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~--   83 (458)
T 1f60_A            6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETP--   83 (458)
T ss_dssp             EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECS--
T ss_pred             ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecC--
Confidence            4689999999999999999999864  1110                      00       0111112222334443  


Q ss_pred             cEEEEEEecCCchhhhhhhccHHhhccCCEEEEEEeCCChh---hHH---HHHHHHHHHHHhcCCCCCCCc-EEEEEeCC
Q 006490          471 NKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEY---SWK---RTKELLVEVARLGEDSGYGVP-CLLIASKD  543 (643)
Q Consensus       471 ~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv~D~s~~~---s~~---~~~~~~~~i~~~~~~~~~~~p-vilv~NK~  543 (643)
                      ...+.+|||+|++.+...  +..++..+|++|+|+|++++.   +|+   +..+.+..+...      ++| +|+|+||+
T Consensus        84 ~~~~~iiDtPGh~~f~~~--~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~------~v~~iivviNK~  155 (458)
T 1f60_A           84 KYQVTVIDAPGHRDFIKN--MITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTL------GVRQLIVAVNKM  155 (458)
T ss_dssp             SEEEEEEECCCCTTHHHH--HHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHT------TCCEEEEEEECG
T ss_pred             CceEEEEECCCcHHHHHH--HHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHc------CCCeEEEEEEcc
Confidence            467889999999888765  678889999999999999863   221   333333333332      665 99999999


Q ss_pred             CCCC--cc---ccHHHHHHHHHHhCC----CCcEEeeeccC-CHHHH
Q 006490          544 DLKP--YT---MAVQDSARVTQELGI----EPPIPVSMKSK-DLNNV  580 (643)
Q Consensus       544 Dl~~--~~---~~~~~~~~~~~~~~~----~~~~~vSa~~g-~i~~l  580 (643)
                      |+..  ..   ...++..++.+.+++    .+++++||++| |+.++
T Consensus       156 Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          156 DSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             GGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred             ccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence            9973  11   124456667777775    36999999999 98643

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.52  E-value=4.4e-14  Score=146.91  Aligned_cols=144  Identities=13%  Similarity=0.152  Sum_probs=103.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEEE
Q 006490          425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV  504 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv  504 (643)
                      +|+++|.+|+|||||+++|+.      ...|..  .....+.+.  ...+.+|||+|++.+...  ....+..+|++++|
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~~------~giTi~--~~~~~~~~~--~~~i~iiDtPGh~~f~~~--~~~~~~~aD~ailV   90 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLGK------KGTSSD--ITMYNNDKE--GRNMVFVDAHSYPKTLKS--LITALNISDIAVLC   90 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTSE------EEEESS--SEEEEECSS--SSEEEEEECTTTTTCHHH--HHHHHHTCSEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHh------CCEEEE--eeEEEEecC--CeEEEEEECCChHHHHHH--HHHHHHHCCEEEEE
Confidence            899999999999999999991      112332  233344444  345888999999887554  56778999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhcCCCCCCCcE-EEEEe-CCCCCCccccH---HHHHHHHHHhCC--CCcEE--eeecc-
Q 006490          505 YDSSDEYSWKRTKELLVEVARLGEDSGYGVPC-LLIAS-KDDLKPYTMAV---QDSARVTQELGI--EPPIP--VSMKS-  574 (643)
Q Consensus       505 ~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pv-ilv~N-K~Dl~~~~~~~---~~~~~~~~~~~~--~~~~~--vSa~~-  574 (643)
                      +| +++. +.+..+++..+...      ++|. ++++| |+|+ +.....   ++++++.+.+++  .++++  +||++ 
T Consensus        91 vd-~~g~-~~qt~e~~~~~~~~------~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~  161 (370)
T 2elf_A           91 IP-PQGL-DAHTGECIIALDLL------GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAK  161 (370)
T ss_dssp             EC-TTCC-CHHHHHHHHHHHHT------TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSS
T ss_pred             Ec-CCCC-cHHHHHHHHHHHHc------CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccC
Confidence            99 6543 35556666655554      7787 89999 9999 533222   334444444442  35899  99999 


Q ss_pred             --C-CHHHHHHHHHHHHh
Q 006490          575 --K-DLNNVFSRIIWAAE  589 (643)
Q Consensus       575 --g-~i~~l~~~l~~~~~  589 (643)
                        | |++++++.|.+.+.
T Consensus       162 ~~g~gi~~L~~~l~~~~~  179 (370)
T 2elf_A          162 NPFEGVDELKARINEVAE  179 (370)
T ss_dssp             STTTTHHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHhhcc
Confidence              9 99999999998765

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.52  E-value=3.4e-14  Score=148.15  Aligned_cols=152  Identities=13%  Similarity=0.158  Sum_probs=99.1

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe----------------e-eC-----------------------
Q 006490           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT----------------R-LP-----------------------   51 (643)
Q Consensus        12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~----------------~-~~-----------------------   51 (643)
                      -.+|+|+|++|||||||+|+|++..+.+...+..+..                . ..                       
T Consensus        34 lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~  113 (360)
T 3t34_A           34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDR  113 (360)
T ss_dssp             CCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHH
Confidence            3489999999999999999999987643322211100                0 00                       


Q ss_pred             --------------Cc-ccCCceeEEEEeCCCCCcc-------------hhhhHHhhccCCEEEEEEECCCcccHHHHHH
Q 006490           52 --------------PD-FYPDRVPVTIIDTSSSLEN-------------KGKLNEELKRADAVVLTYACNQQSTLSRLSS  103 (643)
Q Consensus        52 --------------~~-~~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~  103 (643)
                                    .. .......+.+|||||+..+             ......+++++|++|+|+|..+......   
T Consensus       114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~---  190 (360)
T 3t34_A          114 ETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATS---  190 (360)
T ss_dssp             TSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGC---
T ss_pred             hcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCH---
Confidence                          00 0122456899999998875             4556688999999999998765443322   


Q ss_pred             HHHHHHHhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHHHH
Q 006490          104 YWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYY  170 (643)
Q Consensus       104 ~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  170 (643)
                      .|...++... .+.|+|+|+||+|+...... . .+.++.....++  .+++++|++.+.++++.+..
T Consensus       191 ~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~-~-~~~~~~~~~~~~--~~~~~v~~~s~~~i~~~~~~  254 (360)
T 3t34_A          191 DAIKISREVDPSGDRTFGVLTKIDLMDKGTD-A-VEILEGRSFKLK--YPWVGVVNRSQADINKNVDM  254 (360)
T ss_dssp             HHHHHHHHSCTTCTTEEEEEECGGGCCTTCC-S-HHHHTTSSSCCS--SCCEEECCCCHHHHHTTCCH
T ss_pred             HHHHHHHHhcccCCCEEEEEeCCccCCCccc-H-HHHHcCcccccc--CCeEEEEECChHHhccCCCH
Confidence            2444554433 37899999999999765433 1 121222222232  36899999999988876554

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.50  E-value=4.1e-14  Score=147.01  Aligned_cols=157  Identities=15%  Similarity=0.138  Sum_probs=94.2

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC--Ce-----------------------eeC--------------
Q 006490           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA--PT-----------------------RLP--------------   51 (643)
Q Consensus        11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~--~~-----------------------~~~--------------   51 (643)
                      ...+|+|+|++|||||||+|+|++..+.+...+...  .+                       +..              
T Consensus        30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~  109 (353)
T 2x2e_A           30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  109 (353)
T ss_dssp             CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence            346899999999999999999999886432211100  00                       000              


Q ss_pred             ---Cc----------ccCCceeEEEEeCCCCCc-------------chhhhHHhhccCC-EEEEEEECCCcccHHHHHHH
Q 006490           52 ---PD----------FYPDRVPVTIIDTSSSLE-------------NKGKLNEELKRAD-AVVLTYACNQQSTLSRLSSY  104 (643)
Q Consensus        52 ---~~----------~~~~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~ad-~il~v~d~~~~~s~~~~~~~  104 (643)
                         ..          .......+.||||||+..             +..+...++..++ ++++|+|++......... .
T Consensus       110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~-~  188 (353)
T 2x2e_A          110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL-K  188 (353)
T ss_dssp             TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHH-H
T ss_pred             ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHH-H
Confidence               00          011246799999999743             2234446676655 555566655432222211 2


Q ss_pred             HHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhH--HHHhhcccceEEEeCcccCCChhHHHHHHHH
Q 006490          105 WLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGP--IMQQFREIETCVECSATTMIQVPDVFYYAQK  173 (643)
Q Consensus       105 ~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~  173 (643)
                      +++.+...  +.|+++|+||+|+......  ....++.  +....+ ..+++++||++|.|++++++.+.+
T Consensus       189 i~~~~~~~--~~~~i~V~NK~Dl~~~~~~--~~~~~~~~~~~l~~~-~~~v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          189 VAKEVDPQ--GQRTIGVITKLDLMDEGTD--ARDVLENKLLPLRRG-YIGVVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             HHHHHCTT--CTTEEEEEECGGGSCTTCC--CHHHHTTCSSCCTTC-EEECCCCCHHHHHTTCCHHHHHHH
T ss_pred             HHHHhCcC--CCceEEEeccccccCcchh--HHHHHhCCcccccCC-ceEEEeCCcccccccccHHHHHHH
Confidence            44444433  7899999999999754331  1111110  001111 225788999999999999998876

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.49  E-value=1.4e-13  Score=154.05  Aligned_cols=132  Identities=15%  Similarity=0.135  Sum_probs=87.7

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCc----------------ccceEEEEEEcCCCcEEEEEEecCCchh
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTT----------------GEQYAVNVVDQPGGNKKTLILQEIPEEG  484 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~----------------~~~~~~~~v~~~g~~~~~~i~d~~g~~~  484 (643)
                      ....+|+|+|++|+|||||+++|++.........+.                +..+......+......+.+|||+|++.
T Consensus         7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~   86 (665)
T 2dy1_A            7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD   86 (665)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred             CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence            345789999999999999999999543321111000                1111111222222456788999999988


Q ss_pred             hhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhC
Q 006490          485 VKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELG  563 (643)
Q Consensus       485 ~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~  563 (643)
                      +...  ...+++.+|++++|+|++++...+ ...++..+...      ++|+++|+||+|+. . ...+..+++.+.++
T Consensus        87 f~~~--~~~~l~~ad~~ilVvD~~~g~~~q-t~~~~~~~~~~------~ip~ilv~NKiD~~-~-~~~~~~~~l~~~l~  154 (665)
T 2dy1_A           87 FVGE--IRGALEAADAALVAVSAEAGVQVG-TERAWTVAERL------GLPRMVVVTKLDKG-G-DYYALLEDLRSTLG  154 (665)
T ss_dssp             GHHH--HHHHHHHCSEEEEEEETTTCSCHH-HHHHHHHHHHT------TCCEEEEEECGGGC-C-CHHHHHHHHHHHHC
T ss_pred             hHHH--HHHHHhhcCcEEEEEcCCcccchh-HHHHHHHHHHc------cCCEEEEecCCchh-h-hHHHHHHHHHHHhC
Confidence            7665  678899999999999999876533 34555555544      89999999999987 2 23344445554443

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.49  E-value=8e-14  Score=141.60  Aligned_cols=119  Identities=15%  Similarity=0.129  Sum_probs=92.0

Q ss_pred             CCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECC----------CcccHHHHHHHHHHHHHhc--CCCCcEEEEEe
Q 006490           56 PDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACN----------QQSTLSRLSSYWLPELRRL--EIKVPIIVAGC  123 (643)
Q Consensus        56 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~----------~~~s~~~~~~~~~~~l~~~--~~~~pvilv~N  123 (643)
                      .+++.+.+|||+|++.+...+..++++++++|||||++          +..++++... |+..+...  ..+.|++|++|
T Consensus       158 ~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~-~~~~i~~~~~~~~~piiLv~N  236 (340)
T 4fid_A          158 VKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIA-VFKDIMTNEFLKGAVKLIFLN  236 (340)
T ss_dssp             SSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHH-HHHHHHHCGGGTTSEEEEEEE
T ss_pred             eeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHH-HHHHHhhhhccCCCeEEEEEE
Confidence            45788999999999999999999999999999999998          6788888775 55555332  35899999999


Q ss_pred             cccCCCCC---------------ccchhhhhhhHHHHhh------c------------------ccceEEEeCcccCCCh
Q 006490          124 KLDLRGDH---------------NATSLEEVMGPIMQQF------R------------------EIETCVECSATTMIQV  164 (643)
Q Consensus       124 K~D~~~~~---------------~~~~~~~~~~~~~~~~------~------------------~~~~~~~~Sa~~~~gi  164 (643)
                      |+|+...+               .. ..+++...+..++      .                  ....++++||+++.||
T Consensus       237 K~DL~~eki~~~~l~~~fp~y~g~~-~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv  315 (340)
T 4fid_A          237 KMDLFEEKLTKVPLNTIFPEYTGGD-NAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNI  315 (340)
T ss_dssp             CHHHHHHHHHHSCGGGTCTTCCCTT-CHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHH
T ss_pred             CchhhhhhcCcchHHHhhhhhcCCC-CHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHH
Confidence            99975421               11 2445555566666      0                  1135789999999999


Q ss_pred             hHHHHHHHHHHh
Q 006490          165 PDVFYYAQKAVL  176 (643)
Q Consensus       165 ~~l~~~i~~~~~  176 (643)
                      ..+|..+.+.++
T Consensus       316 ~~vF~~v~~~Il  327 (340)
T 4fid_A          316 KRVFMLAVDVIM  327 (340)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999888765

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.49  E-value=6.1e-15  Score=162.60  Aligned_cols=158  Identities=19%  Similarity=0.175  Sum_probs=87.9

Q ss_pred             cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCC-------------------------------CCCcccceEEEEEEcC
Q 006490          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENY-------------------------------APTTGEQYAVNVVDQP  468 (643)
Q Consensus       420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~-------------------------------~~t~~~~~~~~~v~~~  468 (643)
                      .+..++|+|+|.+|+|||||+|+|++.......                               .++++.+.....+.++
T Consensus       174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~  253 (592)
T 3mca_A          174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD  253 (592)
T ss_dssp             CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence            456789999999999999999999753211110                               1122222223333333


Q ss_pred             CCcEEEEEEecCCchhhhhhhccHHhhccCCEEEEEEeCCChh---hH---HHHHHHHHHHHHhcCCCCCCCc-EEEEEe
Q 006490          469 GGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEY---SW---KRTKELLVEVARLGEDSGYGVP-CLLIAS  541 (643)
Q Consensus       469 g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv~D~s~~~---s~---~~~~~~~~~i~~~~~~~~~~~p-vilv~N  541 (643)
                        ...+.+|||+|++.+...  +...+..||++|+|+|++++.   .+   .+....+..+...      ++| +|+|+|
T Consensus       254 --~~~i~iiDTPGh~~f~~~--~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l------gip~iIvviN  323 (592)
T 3mca_A          254 --KKIYEIGDAPGHRDFISG--MIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL------GISEIVVSVN  323 (592)
T ss_dssp             -------CCEEESSSEEEEE--CCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS------SCCCEEEEEE
T ss_pred             --CeEEEEEECCChHHHHHH--HHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc------CCCeEEEEEe
Confidence              356778999999887665  667889999999999998642   11   1122223333333      676 999999


Q ss_pred             CCCCCCc--ccc---HHHHHHHH-HHhCCC----CcEEeeeccC-CHH--------------HHHHHHHHH
Q 006490          542 KDDLKPY--TMA---VQDSARVT-QELGIE----PPIPVSMKSK-DLN--------------NVFSRIIWA  587 (643)
Q Consensus       542 K~Dl~~~--~~~---~~~~~~~~-~~~~~~----~~~~vSa~~g-~i~--------------~l~~~l~~~  587 (643)
                      |+|+...  ...   ...+..+. +.+++.    +++++||++| |+.              .|++.|...
T Consensus       324 KiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~  394 (592)
T 3mca_A          324 KLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQL  394 (592)
T ss_dssp             CGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTS
T ss_pred             ccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhh
Confidence            9999752  111   22333333 444663    5899999999 997              677777654

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.49  E-value=1.4e-13  Score=149.57  Aligned_cols=115  Identities=16%  Similarity=0.103  Sum_probs=77.5

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC----------CCc------------ccceEEEEEEcCCCcEEEEEEec
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYA----------PTT------------GEQYAVNVVDQPGGNKKTLILQE  479 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~----------~t~------------~~~~~~~~v~~~g~~~~~~i~d~  479 (643)
                      +..+|+|+|.+|+|||||+++|++........          .+.            +.......+..  ....+.+|||
T Consensus        12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~--~~~~i~liDT   89 (529)
T 2h5e_A           12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPY--HDCLVNLLDT   89 (529)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEE--TTEEEEEECC
T ss_pred             CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEE--CCeEEEEEEC
Confidence            45799999999999999999999642111000          000            01111122332  3467889999


Q ss_pred             CCchhhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC
Q 006490          480 IPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP  547 (643)
Q Consensus       480 ~g~~~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~  547 (643)
                      +|++.+...  +..++..+|++|+|+|++++...+ ...++..+...      ++|+++|+||+|+..
T Consensus        90 PG~~df~~~--~~~~l~~aD~~IlVvDa~~g~~~~-t~~~~~~~~~~------~ipiivviNK~Dl~~  148 (529)
T 2h5e_A           90 PGHEDFSED--TYRTLTAVDCCLMVIDAAKGVEDR-TRKLMEVTRLR------DTPILTFMNKLDRDI  148 (529)
T ss_dssp             CCSTTCCHH--HHHGGGGCSEEEEEEETTTCSCHH-HHHHHHHHTTT------TCCEEEEEECTTSCC
T ss_pred             CCChhHHHH--HHHHHHHCCEEEEEEeCCccchHH-HHHHHHHHHHc------CCCEEEEEcCcCCcc
Confidence            999877655  677899999999999999875422 33333333322      899999999999975

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.49  E-value=2.4e-13  Score=142.57  Aligned_cols=162  Identities=22%  Similarity=0.161  Sum_probs=109.5

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchh----hhhh-hccHHhhccC
Q 006490          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG----VKKI-LSNKEALASC  498 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~----~~~~-~~~~~~~~~a  498 (643)
                      -.|+|+|++|||||||+++|++........+.++.....-.+..+ ....+.++|++|...    ...+ ......+..+
T Consensus       158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~-~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era  236 (416)
T 1udx_A          158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVS-EEERFTLADIPGIIEGASEGKGLGLEFLRHIART  236 (416)
T ss_dssp             CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECS-SSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEec-CcceEEEEeccccccchhhhhhhhHHHHHHHHHH
Confidence            468999999999999999999875433333322222334445555 345677899999632    1111 0123345689


Q ss_pred             CEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC-C
Q 006490          499 DVTIFVYDSSDEYSWKRTKELLVEVARLGE-DSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-D  576 (643)
Q Consensus       499 d~illv~D~s~~~s~~~~~~~~~~i~~~~~-~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g-~  576 (643)
                      +++++|+|++ ...+..+..+..++..+.. ..  ..|.++|+||+|+... ...+......+..+.. ++++||+++ |
T Consensus       237 ~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~--~~P~ILVlNKlDl~~~-~~~~~l~~~l~~~g~~-vi~iSA~~g~g  311 (416)
T 1udx_A          237 RVLLYVLDAA-DEPLKTLETLRKEVGAYDPALL--RRPSLVALNKVDLLEE-EAVKALADALAREGLA-VLPVSALTGAG  311 (416)
T ss_dssp             SEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHH--HSCEEEEEECCTTSCH-HHHHHHHHHHHTTTSC-EEECCTTTCTT
T ss_pred             HhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhh--cCCEEEEEECCChhhH-HHHHHHHHHHHhcCCe-EEEEECCCccC
Confidence            9999999998 4456666666666554421 01  5799999999999864 3333334444445555 999999999 9


Q ss_pred             HHHHHHHHHHHHhCC
Q 006490          577 LNNVFSRIIWAAEHP  591 (643)
Q Consensus       577 i~~l~~~l~~~~~~~  591 (643)
                      ++++++.|.+.+...
T Consensus       312 i~eL~~~i~~~l~~~  326 (416)
T 1udx_A          312 LPALKEALHALVRST  326 (416)
T ss_dssp             HHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999988643

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.48  E-value=4.2e-14  Score=152.07  Aligned_cols=152  Identities=14%  Similarity=0.190  Sum_probs=90.6

Q ss_pred             cCceEEEEEEcCCCCCHHHHHHHHhcCC--CC----------------------CCCC-------CCcccceEEEEEEcC
Q 006490          420 ERNVFRCLLFGPQNAGKSALLNSFLERP--FS----------------------ENYA-------PTTGEQYAVNVVDQP  468 (643)
Q Consensus       420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~--~~----------------------~~~~-------~t~~~~~~~~~v~~~  468 (643)
                      .+..++|+++|.+|+|||||+++|+...  +.                      ...+       ..++.+.....+.++
T Consensus        40 ~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~  119 (467)
T 1r5b_A           40 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE  119 (467)
T ss_dssp             CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS
T ss_pred             CCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecC
Confidence            3556899999999999999999997521  10                      0000       011111112234444


Q ss_pred             CCcEEEEEEecCCchhhhhhhccHHhhccCCEEEEEEeCCChh---hHH---HHHHHHHHHHHhcCCCCCCCc-EEEEEe
Q 006490          469 GGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEY---SWK---RTKELLVEVARLGEDSGYGVP-CLLIAS  541 (643)
Q Consensus       469 g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv~D~s~~~---s~~---~~~~~~~~i~~~~~~~~~~~p-vilv~N  541 (643)
                        ...+.+|||+|++.+...  +...+..+|++|+|+|++++.   +|+   +..+.+..+...      ++| +|+|+|
T Consensus       120 --~~~~~iiDtPGh~~f~~~--~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~------~vp~iivviN  189 (467)
T 1r5b_A          120 --HRRFSLLDAPGHKGYVTN--MINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQ------GINHLVVVIN  189 (467)
T ss_dssp             --SEEEEECCCCC-------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHT------TCSSEEEEEE
T ss_pred             --CeEEEEEECCCcHHHHHH--HHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHc------CCCEEEEEEE
Confidence              367889999999888665  677889999999999999873   222   122222222222      777 999999


Q ss_pred             CCCCCCcc-------ccHHHHHHHHHHh-CCC-----CcEEeeeccC-CHHHHH
Q 006490          542 KDDLKPYT-------MAVQDSARVTQEL-GIE-----PPIPVSMKSK-DLNNVF  581 (643)
Q Consensus       542 K~Dl~~~~-------~~~~~~~~~~~~~-~~~-----~~~~vSa~~g-~i~~l~  581 (643)
                      |+|+....       ...++...+.+.+ ++.     +++++||++| |+.+++
T Consensus       190 K~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          190 KMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             CTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             CccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence            99996421       1134566666666 543     4899999999 998755

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.47  E-value=1.4e-13  Score=139.34  Aligned_cols=119  Identities=13%  Similarity=0.149  Sum_probs=88.8

Q ss_pred             CceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECC----------CcccHHHHHHHHHHHHHhc--CCCCcEEEEEec
Q 006490           57 DRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACN----------QQSTLSRLSSYWLPELRRL--EIKVPIIVAGCK  124 (643)
Q Consensus        57 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~----------~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK  124 (643)
                      +++.+.+|||+|++.+...+..++++++++|||||++          +..++++... |+..+...  ..+.|++|++||
T Consensus       165 ~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~-~~~~i~~~~~~~~~~iiL~~NK  243 (327)
T 3ohm_A          165 QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKA-LFRTIITYPWFQNSSVILFLNK  243 (327)
T ss_dssp             TTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHH-HHHHHHTSGGGTTCEEEEEEEC
T ss_pred             eceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHH-HHHHHhhhhccCCceEEEEEEC
Confidence            5678899999999999999999999999999999665          6677777664 55555432  358999999999


Q ss_pred             ccCCCCC----------------ccchhhhhhhHHHHhhcc-------cceEEEeCcccCCChhHHHHHHHHHHhC
Q 006490          125 LDLRGDH----------------NATSLEEVMGPIMQQFRE-------IETCVECSATTMIQVPDVFYYAQKAVLH  177 (643)
Q Consensus       125 ~D~~~~~----------------~~~~~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~gi~~l~~~i~~~~~~  177 (643)
                      +|+...+                .. +.+++...+..+|..       ...++++||+++.||.++|..+.+.++.
T Consensus       244 ~DL~~~ki~~~~l~~~fp~y~g~~~-~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~  318 (327)
T 3ohm_A          244 KDLLEEKIMYSHLVDYFPEYDGPQR-DAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ  318 (327)
T ss_dssp             HHHHHHHTTTSCGGGTCTTCCSCSS-CHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             chhhhhhhccchHhhhchhccCCCC-CHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHH
Confidence            9975422                12 334444444433321       1247899999999999999999888764

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.46  E-value=2.2e-13  Score=137.90  Aligned_cols=118  Identities=11%  Similarity=0.047  Sum_probs=90.6

Q ss_pred             CcEEEEEEecCCchhhhhhhccHHhhccCCEEEEEEeCC----------ChhhHHHHHHHHHHHHHhcCCCCCCCcEEEE
Q 006490          470 GNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSS----------DEYSWKRTKELLVEVARLGEDSGYGVPCLLI  539 (643)
Q Consensus       470 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv~D~s----------~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv  539 (643)
                      +..++.+||++|++.+.++  +..++++++++|+|+|++          +..+++....|+..+.......  +.|++++
T Consensus       165 ~~v~l~iwDtgGQe~~R~~--w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~--~~~iiL~  240 (327)
T 3ohm_A          165 QSVIFRMVDVGGQRSERRK--WIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQ--NSSVILF  240 (327)
T ss_dssp             TTEEEEEEEECCSHHHHTT--GGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGT--TCEEEEE
T ss_pred             eceeeEEEEcCCchhHHHH--HHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccC--CceEEEE
Confidence            3467889999999999988  899999999999999665          6677888888888876543323  7999999


Q ss_pred             EeCCCCCCcc-----------------ccHHHHHHHHH----------HhCCCCcEEeeeccC-CHHHHHHHHHHHHhCC
Q 006490          540 ASKDDLKPYT-----------------MAVQDSARVTQ----------ELGIEPPIPVSMKSK-DLNNVFSRIIWAAEHP  591 (643)
Q Consensus       540 ~NK~Dl~~~~-----------------~~~~~~~~~~~----------~~~~~~~~~vSa~~g-~i~~l~~~l~~~~~~~  591 (643)
                      +||+|+...+                 ...+.+..+..          ..++ .+++|||+++ ||+.+|..+.+.+...
T Consensus       241 ~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i-~~~~TsA~d~~nV~~vF~~v~~~Il~~  319 (327)
T 3ohm_A          241 LNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKII-YSHFTCATDTENIRFVFAAVKDTILQL  319 (327)
T ss_dssp             EECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCE-EEEECCTTCHHHHHHHHHHHHHHHHHT
T ss_pred             EECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCc-EEEEEEeecCHHHHHHHHHHHHHHHHH
Confidence            9999986533                 12444554532          2233 3789999999 9999999999987644


Q ss_pred             C
Q 006490          592 H  592 (643)
Q Consensus       592 ~  592 (643)
                      +
T Consensus       320 ~  320 (327)
T 3ohm_A          320 N  320 (327)
T ss_dssp             T
T ss_pred             h
Confidence            3

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.46  E-value=7.2e-13  Score=131.69  Aligned_cols=122  Identities=16%  Similarity=0.168  Sum_probs=81.2

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhh----
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEAL----  495 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~-~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~----  495 (643)
                      ...++|+++|.+|||||||+|+|++........ +.++.......+...  ...+.+|||+|++.+...  ...++    
T Consensus        34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~l~liDTpG~~~~~~~--~~~~~~~i~  109 (262)
T 3def_A           34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMG--GFTINIIDTPGLVEAGYV--NHQALELIK  109 (262)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEET--TEEEEEEECCCSEETTEE--CHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEEC--CeeEEEEECCCCCCcccc--hHHHHHHHH
Confidence            357999999999999999999999988654443 322223333334444  357889999998766443  12222    


Q ss_pred             -----ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC
Q 006490          496 -----ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP  547 (643)
Q Consensus       496 -----~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~  547 (643)
                           ..+|++++|+|++..........|+..+....... ...|+++|+||+|+..
T Consensus       110 ~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~-~~~~~ivv~nK~Dl~~  165 (262)
T 3def_A          110 GFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKE-IWCKTLLVLTHAQFSP  165 (262)
T ss_dssp             HHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGG-GGGGEEEEEECTTCCC
T ss_pred             HHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchh-hhcCEEEEEeCcccCC
Confidence                 28999999999876432233345666666543211 0249999999999964

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.45  E-value=7.7e-13  Score=138.79  Aligned_cols=158  Identities=20%  Similarity=0.192  Sum_probs=104.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCCCCCeeeCCcccCC-ceeEEEEeCCCCCcch----hhhH---HhhccC
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATESV-PEKVPPVHAPTRLPPDFYPD-RVPVTIIDTSSSLENK----GKLN---EELKRA   83 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~i~Dt~G~~~~~----~~~~---~~~~~a   83 (643)
                      ..|+|+|++|||||||+++|++... ..+++.++-.... ..+... ...+.+|||||+.+..    .+..   ..+..+
T Consensus       158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~-G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era  236 (416)
T 1udx_A          158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNL-GVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIART  236 (416)
T ss_dssp             CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEE-EEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCccccCcccceeccee-eEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHH
Confidence            4589999999999999999998753 1223322111111 112222 3679999999985421    1112   335679


Q ss_pred             CEEEEEEECCCcccHHHHHHHHHHHHHhcC---CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCccc
Q 006490           84 DAVVLTYACNQQSTLSRLSSYWLPELRRLE---IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATT  160 (643)
Q Consensus        84 d~il~v~d~~~~~s~~~~~~~~~~~l~~~~---~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  160 (643)
                      +.+|.|+|++ ...+..+. .|.+.+....   .+.|.++|+||+|+...  . .. +.+.......+  .+++.+||++
T Consensus       237 ~~lL~vvDls-~~~~~~ls-~g~~el~~la~aL~~~P~ILVlNKlDl~~~--~-~~-~~l~~~l~~~g--~~vi~iSA~~  308 (416)
T 1udx_A          237 RVLLYVLDAA-DEPLKTLE-TLRKEVGAYDPALLRRPSLVALNKVDLLEE--E-AV-KALADALAREG--LAVLPVSALT  308 (416)
T ss_dssp             SEEEEEEETT-SCHHHHHH-HHHHHHHHHCHHHHHSCEEEEEECCTTSCH--H-HH-HHHHHHHHTTT--SCEEECCTTT
T ss_pred             HhhhEEeCCc-cCCHHHHH-HHHHHHHHHhHHhhcCCEEEEEECCChhhH--H-HH-HHHHHHHHhcC--CeEEEEECCC
Confidence            9999999998 66666665 4666665543   26899999999998753  1 11 11222222222  2689999999


Q ss_pred             CCChhHHHHHHHHHHhCCC
Q 006490          161 MIQVPDVFYYAQKAVLHPT  179 (643)
Q Consensus       161 ~~gi~~l~~~i~~~~~~~~  179 (643)
                      +.|++++++.+.+.+....
T Consensus       309 g~gi~eL~~~i~~~l~~~~  327 (416)
T 1udx_A          309 GAGLPALKEALHALVRSTP  327 (416)
T ss_dssp             CTTHHHHHHHHHHHHHTSC
T ss_pred             ccCHHHHHHHHHHHHHhcc
Confidence            9999999999999886543

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.45  E-value=5.6e-13  Score=149.77  Aligned_cols=114  Identities=16%  Similarity=0.084  Sum_probs=80.8

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCCC--------------------CCCCCcccceEEEEEEcCCCcEEEEEEecC
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSE--------------------NYAPTTGEQYAVNVVDQPGGNKKTLILQEI  480 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~--------------------~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~  480 (643)
                      .+..+|+|+|.+|+|||||+++|+......                    ...+|....  ...+..  ....+.+|||+
T Consensus        10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~--~~~~~~--~~~~i~liDTP   85 (691)
T 1dar_A           10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAA--VTTCFW--KDHRINIIDTP   85 (691)
T ss_dssp             GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CC--EEEEEE--TTEEEEEECCC
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccc--eEEEEE--CCeEEEEEECc
Confidence            356899999999999999999998421100                    000122211  222222  34678899999


Q ss_pred             CchhhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC
Q 006490          481 PEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP  547 (643)
Q Consensus       481 g~~~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~  547 (643)
                      |+..+...  +..+++.+|++|+|+|++++.+++....|. .+...      ++|+++|+||+|+..
T Consensus        86 G~~df~~~--~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~-~~~~~------~~p~ivviNKiD~~~  143 (691)
T 1dar_A           86 GHVDFTIE--VERSMRVLDGAIVVFDSSQGVEPQSETVWR-QAEKY------KVPRIAFANKMDKTG  143 (691)
T ss_dssp             SSTTCHHH--HHHHHHHCSEEEEEEETTTCSCHHHHHHHH-HHHHT------TCCEEEEEECTTSTT
T ss_pred             CccchHHH--HHHHHHHCCEEEEEEECCCCcchhhHHHHH-HHHHc------CCCEEEEEECCCccc
Confidence            99887665  678899999999999999988877655554 34443      899999999999875

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.44  E-value=3.7e-14  Score=147.34  Aligned_cols=156  Identities=15%  Similarity=0.105  Sum_probs=93.0

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCC-----C-CC----------------------cccc--------------
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENY-----A-PT----------------------TGEQ--------------  459 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~-----~-~t----------------------~~~~--------------  459 (643)
                      ..++|+|+|.+|||||||+|+|++.++....     . |+                      ++.+              
T Consensus        30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~  109 (353)
T 2x2e_A           30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  109 (353)
T ss_dssp             CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence            3479999999999999999999998875222     1 22                      0000              


Q ss_pred             ---------eEEEEEEcCCCcEEEEEEecCCch-------------hhhhhhccHHhhccC-CEEEEEEeCCChhhHHHH
Q 006490          460 ---------YAVNVVDQPGGNKKTLILQEIPEE-------------GVKKILSNKEALASC-DVTIFVYDSSDEYSWKRT  516 (643)
Q Consensus       460 ---------~~~~~v~~~g~~~~~~i~d~~g~~-------------~~~~~~~~~~~~~~a-d~illv~D~s~~~s~~~~  516 (643)
                               .....+..+ ....+.+|||+|..             .+..+  ...++..+ +++++|.|++....-...
T Consensus       110 g~~~gi~~~~~~~~i~~~-~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~iiL~v~~a~~~~~~~~~  186 (353)
T 2x2e_A          110 GTNKGISPVPINLRVYSP-HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDM--LMQFVTKENCLILAVSPANSDLANSDA  186 (353)
T ss_dssp             TTTTCCCCCCEEEEEEET-TCCSEEEEECCCBCSSCCTTCCTTHHHHHHHH--HHHHHTSTTEEEEEEEETTSCGGGCHH
T ss_pred             ccCCCcccCceEEEEecC-CCCCcEEEECCCCCCCccCCCchhHHHHHHHH--HHHHHcCCCeEEEEEecCCCccchhHH
Confidence                     000011111 13457789999952             22333  45566555 456667777654332222


Q ss_pred             HHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHH--HHHHhCCCCcEEeeeccC-CHHHHHHHHHH
Q 006490          517 KELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSAR--VTQELGIEPPIPVSMKSK-DLNNVFSRIIW  586 (643)
Q Consensus       517 ~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~--~~~~~~~~~~~~vSa~~g-~i~~l~~~l~~  586 (643)
                      ..++..+...      +.|+++|+||+|+.+.... ....+.  +....++.+++++||++| |++++++.+.+
T Consensus       187 ~~i~~~~~~~------~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          187 LKVAKEVDPQ------GQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             HHHHHHHCTT------CTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHhCcC------CCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence            2333333222      7999999999999764331 111110  000123335789999999 99999999887

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.44  E-value=1e-13  Score=145.20  Aligned_cols=83  Identities=22%  Similarity=0.311  Sum_probs=46.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCCCCCeeeCC----------------------cccC-CceeEEEEeCCC
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATESV-PEKVPPVHAPTRLPP----------------------DFYP-DRVPVTIIDTSS   68 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~~~-~~~~~~~~~~~~~~~----------------------~~~~-~~~~~~i~Dt~G   68 (643)
                      +||+|+|.||||||||+|+|++... +.++|.++.......                      .+.. ....+.+|||||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG   80 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence            5899999999999999999999872 233443222111110                      0011 146799999999


Q ss_pred             CCcc----hhhhH---HhhccCCEEEEEEECCCc
Q 006490           69 SLEN----KGKLN---EELKRADAVVLTYACNQQ   95 (643)
Q Consensus        69 ~~~~----~~~~~---~~~~~ad~il~v~d~~~~   95 (643)
                      +...    ..+..   .+++.+|++++|+|+++.
T Consensus        81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTCC
T ss_pred             cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            8642    22222   357899999999999875

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.43  E-value=1.2e-13  Score=143.94  Aligned_cols=152  Identities=15%  Similarity=0.146  Sum_probs=95.6

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC-CcccceEEEE-------------------------------------
Q 006490          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAP-TTGEQYAVNV-------------------------------------  464 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~-t~~~~~~~~~-------------------------------------  464 (643)
                      ..+|+|+|++|||||||+|+|+|..+...... .++....+..                                     
T Consensus        34 lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~  113 (360)
T 3t34_A           34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDR  113 (360)
T ss_dssp             CCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHH
Confidence            34999999999999999999999887444432 1111111111                                     


Q ss_pred             ----------------EEcCCCcEEEEEEecCCchhh-------------hhhhccHHhhccCCEEEEEEeCCChhhHHH
Q 006490          465 ----------------VDQPGGNKKTLILQEIPEEGV-------------KKILSNKEALASCDVTIFVYDSSDEYSWKR  515 (643)
Q Consensus       465 ----------------v~~~g~~~~~~i~d~~g~~~~-------------~~~~~~~~~~~~ad~illv~D~s~~~s~~~  515 (643)
                                      +..+ ....+.+|||+|....             ..+  ...++.++|++|+|+|.++..... 
T Consensus       114 ~~g~~~~~s~~~i~l~i~~~-~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~--~~~~i~~~d~iilvv~~~~~~~~~-  189 (360)
T 3t34_A          114 ETGRSKAISSVPIHLSIYSP-NVVNLTLIDLPGLTKVAVDGQSDSIVKDIENM--VRSYIEKPNCIILAISPANQDLAT-  189 (360)
T ss_dssp             TSCTTCCCCCSCEEEEEEET-TSCSEEEEECCCBCSSCCTTCCSSHHHHHHHH--HHHHHHSSSEEEEEEEETTSCGGG-
T ss_pred             hcCCCCCcccceEEEEEeCC-CCCCeEEEECCCCCcCCcCCCchhHHHHHHHH--HHHHhhcCCeEEEEeecccCCcCC-
Confidence                            1111 2234678999997654             233  677889999999999876532211 


Q ss_pred             HHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHHHHHH
Q 006490          516 TKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNNVFSR  583 (643)
Q Consensus       516 ~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l~~~  583 (643)
                       ..|+..+..... .  +.|+++|+||+|+...... .+..+.+...++.. ++++|++++ ++++.+..
T Consensus       190 -~~~~~l~~~~~~-~--~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~v~~~s~~~i~~~~~~  254 (360)
T 3t34_A          190 -SDAIKISREVDP-S--GDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYP-WVGVVNRSQADINKNVDM  254 (360)
T ss_dssp             -CHHHHHHHHSCT-T--CTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSC-CEEECCCCHHHHHTTCCH
T ss_pred             -HHHHHHHHHhcc-c--CCCEEEEEeCCccCCCcccHHHHHcCccccccCC-eEEEEECChHHhccCCCH
Confidence             222332332222 2  7899999999999864432 22233333344554 899999998 88765544

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.43  E-value=1.1e-12  Score=143.07  Aligned_cols=114  Identities=12%  Similarity=0.084  Sum_probs=84.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCC-----------------CCCCCCCCC-----CeeeCCcccCCceeEEEEeCCCCC
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATESV-----------------PEKVPPVHA-----PTRLPPDFYPDRVPVTIIDTSSSL   70 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~~~-----------------~~~~~~~~~-----~~~~~~~~~~~~~~~~i~Dt~G~~   70 (643)
                      -+|+|+|+.++|||||..+|+...-                 ..++.....     .......+.++++.++|+||||..
T Consensus        32 RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGHv  111 (548)
T 3vqt_A           32 RTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGHQ  111 (548)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCGG
T ss_pred             ceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCcH
Confidence            3599999999999999999963210                 011111000     001222345688999999999999


Q ss_pred             cchhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCC
Q 006490           71 ENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD  130 (643)
Q Consensus        71 ~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~  130 (643)
                      +|......+++-+|++|+|+|+...-..+...  .++.+.++  ++|+|+++||+|....
T Consensus       112 DF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~--v~~~a~~~--~lp~i~fINK~Dr~~a  167 (548)
T 3vqt_A          112 DFSEDTYRVLTAVDSALVVIDAAKGVEAQTRK--LMDVCRMR--ATPVMTFVNKMDREAL  167 (548)
T ss_dssp             GCSHHHHHHHHSCSEEEEEEETTTBSCHHHHH--HHHHHHHT--TCCEEEEEECTTSCCC
T ss_pred             HHHHHHHHHHHhcCceEEEeecCCCcccccHH--HHHHHHHh--CCceEEEEecccchhc
Confidence            99999999999999999999988776555543  55677776  8999999999998764

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.41  E-value=2.9e-13  Score=141.86  Aligned_cols=86  Identities=17%  Similarity=0.112  Sum_probs=48.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-C-Ccc-cceEEEEEE--c-----------------CC-CcEEEEEEecC
Q 006490          424 FRCLLFGPQNAGKSALLNSFLERPFSENYA-P-TTG-EQYAVNVVD--Q-----------------PG-GNKKTLILQEI  480 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~-~-t~~-~~~~~~~v~--~-----------------~g-~~~~~~i~d~~  480 (643)
                      ++|+|+|.||||||||+|+|++.. ..+.. | ||. .......+.  .                 .+ ....+.+||++
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~-~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtp   79 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVD-VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVA   79 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC---------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECC
Confidence            489999999999999999999987 33222 3 332 222221111  1                 11 12467899999


Q ss_pred             Cchhh----hhh-hccHHhhccCCEEEEEEeCCCh
Q 006490          481 PEEGV----KKI-LSNKEALASCDVTIFVYDSSDE  510 (643)
Q Consensus       481 g~~~~----~~~-~~~~~~~~~ad~illv~D~s~~  510 (643)
                      |....    ..+ .+...+++.||++++|+|++++
T Consensus        80 G~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           80 GLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             ---------------CCCSSTTCSEEEEEEETTCC
T ss_pred             CcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            97531    112 1123567999999999999875

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.41  E-value=8.3e-13  Score=134.11  Aligned_cols=122  Identities=12%  Similarity=0.075  Sum_probs=92.0

Q ss_pred             EEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEEEEeCC----------ChhhHHHHHHHHHHHHHhcCCCC
Q 006490          462 VNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSS----------DEYSWKRTKELLVEVARLGEDSG  531 (643)
Q Consensus       462 ~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv~D~s----------~~~s~~~~~~~~~~i~~~~~~~~  531 (643)
                      ...++.  +..++.+||++|++.+.++  +..++++++++|+|+|++          +..++.....|+..+....... 
T Consensus       153 ~~~~~~--~~v~l~iwDtaGQe~~R~~--w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~-  227 (340)
T 4fid_A          153 EYDFVV--KDIPFHLIDVGGQRSERKX--WVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLK-  227 (340)
T ss_dssp             EEEEES--SSCEEEEEECCSCHHHHHH--HHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGT-
T ss_pred             EEEEEe--eeeeeccccCCCccccccc--HHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccC-
Confidence            334444  3467889999999999988  899999999999999998          6788888888888887654323 


Q ss_pred             CCCcEEEEEeCCCCCCccc----------------cHHHHHH-HHHHh--------------------------CCCCcE
Q 006490          532 YGVPCLLIASKDDLKPYTM----------------AVQDSAR-VTQEL--------------------------GIEPPI  568 (643)
Q Consensus       532 ~~~pvilv~NK~Dl~~~~~----------------~~~~~~~-~~~~~--------------------------~~~~~~  568 (643)
                       +.|++|++||+|+..++.                ..+.+.. +.+++                          ++ .++
T Consensus       228 -~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~i-y~h  305 (340)
T 4fid_A          228 -GAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKV-YTN  305 (340)
T ss_dssp             -TSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEE-EEE
T ss_pred             -CCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcce-EEE
Confidence             799999999999865321                1222322 23333                          12 378


Q ss_pred             EeeeccC-CHHHHHHHHHHHHhC
Q 006490          569 PVSMKSK-DLNNVFSRIIWAAEH  590 (643)
Q Consensus       569 ~vSa~~g-~i~~l~~~l~~~~~~  590 (643)
                      +|||+++ |++.+|..+.+.+..
T Consensus       306 ~TsA~dt~nv~~vF~~v~~~Il~  328 (340)
T 4fid_A          306 PTNATDGSNIKRVFMLAVDVIMK  328 (340)
T ss_dssp             EECTTCHHHHHHHHHHHHHHHHH
T ss_pred             EEEeeCcHHHHHHHHHHHHHHHH
Confidence            9999999 999999999987753

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.41  E-value=1.6e-12  Score=146.04  Aligned_cols=116  Identities=13%  Similarity=0.078  Sum_probs=80.6

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcC--CCCC---CCC-------------CCcccceEEEEEEcCCCcEEEEEEecCCc
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLER--PFSE---NYA-------------PTTGEQYAVNVVDQPGGNKKTLILQEIPE  482 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~--~~~~---~~~-------------~t~~~~~~~~~v~~~g~~~~~~i~d~~g~  482 (643)
                      .+..+|+|+|.+|+|||||+|+|++.  .+..   +..             +.++.......+...  ...+.+|||+|+
T Consensus         8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTPG~   85 (693)
T 2xex_A            8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWE--GHRVNIIDTPGH   85 (693)
T ss_dssp             TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEET--TEEEEEECCCCC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEEC--CeeEEEEECcCC
Confidence            34679999999999999999999952  2110   110             001111112223333  467889999999


Q ss_pred             hhhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC
Q 006490          483 EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP  547 (643)
Q Consensus       483 ~~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~  547 (643)
                      ..+...  ...+++.+|++|+|+|++++.+++....|. .+...      ++|+++|+||+|+..
T Consensus        86 ~df~~~--~~~~l~~aD~~llVvDa~~g~~~~~~~~~~-~~~~~------~~p~ilviNK~Dl~~  141 (693)
T 2xex_A           86 VDFTVE--VERSLRVLDGAVTVLDAQSGVEPQTETVWR-QATTY------GVPRIVFVNKMDKLG  141 (693)
T ss_dssp             SSCCHH--HHHHHHHCSEEEEEEETTTBSCHHHHHHHH-HHHHT------TCCEEEEEECTTSTT
T ss_pred             cchHHH--HHHHHHHCCEEEEEECCCCCCcHHHHHHHH-HHHHc------CCCEEEEEECCCccc
Confidence            877665  678889999999999999987766555443 34443      799999999999975

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.39  E-value=1.5e-13  Score=139.30  Aligned_cols=133  Identities=15%  Similarity=0.119  Sum_probs=106.0

Q ss_pred             HHHHHHhcCCCC-CCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEEEEeCCChh-hHHH
Q 006490          438 ALLNSFLERPFS-ENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEY-SWKR  515 (643)
Q Consensus       438 SLln~l~~~~~~-~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv~D~s~~~-s~~~  515 (643)
                      +|+++++.+.|. ..+.||+++.+... +... +  +..+||+  ++++..+  +..+++++|++|+|||++++. ++..
T Consensus        32 sl~~~~~~~~f~~~~~~pTiGd~~~~~-~~~~-~--~~~iwD~--qer~~~l--~~~~~~~ad~vilV~D~~~~~~s~~~  103 (301)
T 1u0l_A           32 ERILCKLRGKFRLQNLKIYVGDRVEYT-PDET-G--SGVIENV--LHRKNLL--TKPHVANVDQVILVVTVKMPETSTYI  103 (301)
T ss_dssp             CEEEEEECGGGTTTTCCCCTTCEEEEE-CCCS-S--SEEEEEE--CCCSCEE--TTTTEESCCEEEEEECSSTTCCCHHH
T ss_pred             cEEEEEEcccccccCCCCCCccEEEEE-EcCC-C--eEEEEEE--cccccee--eccccccCCEEEEEEeCCCCCCCHHH
Confidence            688899988888 77889998655432 2222 2  6778999  7778777  678999999999999999987 7888


Q ss_pred             HHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhC--CCCcEEeeeccC-CHHHHHHHHHH
Q 006490          516 TKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELG--IEPPIPVSMKSK-DLNNVFSRIIW  586 (643)
Q Consensus       516 ~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~vSa~~g-~i~~l~~~l~~  586 (643)
                      +..|+..+...      ++|+++|+||+||.+.... ++.+++++.++  +. +++|||++| |++++|..+..
T Consensus       104 l~~~l~~~~~~------~~piilv~NK~DL~~~~~v-~~~~~~~~~~~~~~~-~~~~SAktg~gv~~lf~~l~g  169 (301)
T 1u0l_A          104 IDKFLVLAEKN------ELETVMVINKMDLYDEDDL-RKVRELEEIYSGLYP-IVKTSAKTGMGIEELKEYLKG  169 (301)
T ss_dssp             HHHHHHHHHHT------TCEEEEEECCGGGCCHHHH-HHHHHHHHHHTTTSC-EEECCTTTCTTHHHHHHHHSS
T ss_pred             HHHHHHHHHHC------CCCEEEEEeHHHcCCchhH-HHHHHHHHHHhhhCc-EEEEECCCCcCHHHHHHHhcC
Confidence            89999877653      7999999999999865432 44667777777  55 999999999 99999988654

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=99.39  E-value=2.2e-12  Score=129.01  Aligned_cols=98  Identities=13%  Similarity=0.041  Sum_probs=62.6

Q ss_pred             EEeCCCCC-cchhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhh
Q 006490           63 IIDTSSSL-ENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMG  141 (643)
Q Consensus        63 i~Dt~G~~-~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~  141 (643)
                      |-+.||+. .........+..+|+++.|+|+.++.+..+.  .+.+++    .++|+++|+||+|+...       +..+
T Consensus         3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~--~l~~~l----~~kp~ilVlNK~DL~~~-------~~~~   69 (282)
T 1puj_A            3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNP--MIEDIL----KNKPRIMLLNKADKADA-------AVTQ   69 (282)
T ss_dssp             ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCH--HHHHHC----SSSCEEEEEECGGGSCH-------HHHH
T ss_pred             CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCH--HHHHHH----CCCCEEEEEECcccCCH-------HHHH
Confidence            34567764 3445566789999999999999998766431  122222    37999999999999752       1122


Q ss_pred             HHHHhhcc-cceEEEeCcccCCChhHHHHHHHH
Q 006490          142 PIMQQFRE-IETCVECSATTMIQVPDVFYYAQK  173 (643)
Q Consensus       142 ~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~i~~  173 (643)
                      .+.+.+.. -.+++.+||+++.|++++++.+.+
T Consensus        70 ~~~~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~  102 (282)
T 1puj_A           70 QWKEHFENQGIRSLSINSVNGQGLNQIVPASKE  102 (282)
T ss_dssp             HHHHHHHTTTCCEEECCTTTCTTGGGHHHHHHH
T ss_pred             HHHHHHHhcCCcEEEEECCCcccHHHHHHHHHH
Confidence            23332211 126899999999999998876544

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.39  E-value=1.7e-13  Score=138.63  Aligned_cols=161  Identities=16%  Similarity=0.126  Sum_probs=82.9

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcC-CCCCCC--------CCCCCCeeeCC--cccCCceeEEEEeCCCC-------Ccc
Q 006490           11 TGVRVVVVGDRGTGKSSLIAAAATE-SVPEKV--------PPVHAPTRLPP--DFYPDRVPVTIIDTSSS-------LEN   72 (643)
Q Consensus        11 ~~~kI~lvG~~~vGKSsL~n~l~~~-~~~~~~--------~~~~~~~~~~~--~~~~~~~~~~i~Dt~G~-------~~~   72 (643)
                      -.++|+|+|++|||||||+|+|.+. .+....        .++........  ........+++|||+|+       +.+
T Consensus        17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~   96 (301)
T 2qnr_A           17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF   96 (301)
T ss_dssp             -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------C
T ss_pred             CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH
Confidence            3589999999999999999999876 332211        01110001111  11223467899999998       444


Q ss_pred             hhhhH-------Hhhcc-------------CCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCc
Q 006490           73 KGKLN-------EELKR-------------ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN  132 (643)
Q Consensus        73 ~~~~~-------~~~~~-------------ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~  132 (643)
                      .....       .++++             +++++++.+.+. .+++.....+   ++....+.|+++|+||+|+.....
T Consensus        97 ~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~~~---l~~l~~~~~iilV~~K~Dl~~~~e  172 (301)
T 2qnr_A           97 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDVAF---MKAIHNKVNIVPVIAKADTLTLKE  172 (301)
T ss_dssp             TTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHHHH---HHHHTTTSCEEEEECCGGGSCHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHHHH---HHHHHhcCCEEEEEEeCCCCCHHH
Confidence            44333       33333             344555554332 1344433223   333344689999999999875432


Q ss_pred             cchhhhhhhHHHHhhcccceEEEeCcccCCChhHHHHHHHHHHhCC
Q 006490          133 ATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHP  178 (643)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~~~  178 (643)
                      .....+.+..+++.++  .+++++||++| |++++|..+.+.+...
T Consensus       173 ~~~~~~~~~~~~~~~~--~~~~e~Sa~~~-~v~e~f~~l~~~i~~~  215 (301)
T 2qnr_A          173 RERLKKRILDEIEEHN--IKIYHLPDAES-DEDEDFKEQTRLLKAS  215 (301)
T ss_dssp             HHHHHHHHHHHHHHTT--CCCCCCC----------CHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHcC--CeEEecCCccc-cccHHHHHHHHHhhcC
Confidence            2112344555666665  36899999999 9999999999887543

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.39  E-value=1.8e-12  Score=129.41  Aligned_cols=124  Identities=13%  Similarity=0.035  Sum_probs=81.0

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC--CCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhc-----cHH
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYA--PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILS-----NKE  493 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~--~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~-----~~~  493 (643)
                      ...++|+++|.+|+|||||+|+|++..+..+..  +++.. .....++.  ....+.+|||+|...+..+..     ...
T Consensus        37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~-~~~~~~~~--~~~~l~iiDTpG~~~~~~~~~~~~~~i~~  113 (270)
T 1h65_A           37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPR-PVMVSRSR--AGFTLNIIDTPGLIEGGYINDMALNIIKS  113 (270)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSS-CEEEEEEE--TTEEEEEEECCCSEETTEECHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccee-eEEEEEee--CCeEEEEEECCCCCCCccchHHHHHHHHH
Confidence            457999999999999999999999988754443  23322 22222333  456788999999865543210     111


Q ss_pred             --hhccCCEEEEEEeCCChhhHH-HHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcc
Q 006490          494 --ALASCDVTIFVYDSSDEYSWK-RTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT  549 (643)
Q Consensus       494 --~~~~ad~illv~D~s~~~s~~-~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~  549 (643)
                        ....+|++++|+|++.. ++. ....|+..+....... ...|+++|+||+|+....
T Consensus       114 ~~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~-~~~~iivV~nK~Dl~~~~  170 (270)
T 1h65_A          114 FLLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKG-IWNKAIVALTHAQFSPPD  170 (270)
T ss_dssp             HTTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGG-GGGGEEEEEECCSCCCGG
T ss_pred             HhhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcc-cccCEEEEEECcccCCcC
Confidence              13479999999998653 232 2346666665543210 026999999999997543

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.39  E-value=5.3e-13  Score=135.03  Aligned_cols=160  Identities=14%  Similarity=0.140  Sum_probs=83.8

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcC-CCCCCC--------CCCcccceEEEEEEcCCCcEEEEEEecCCc-------hhh
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLER-PFSENY--------APTTGEQYAVNVVDQPGGNKKTLILQEIPE-------EGV  485 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~-~~~~~~--------~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~-------~~~  485 (643)
                      -.++|+|+|++|||||||+|+|.+. .+...+        .+|.........+...+....+.+||++|.       +.+
T Consensus        17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~   96 (301)
T 2qnr_A           17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF   96 (301)
T ss_dssp             -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------C
T ss_pred             CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH
Confidence            3489999999999999999999886 333222        112221122222333444567789999997       333


Q ss_pred             hhhhc-----cHHhhc-------------cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC
Q 006490          486 KKILS-----NKEALA-------------SCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP  547 (643)
Q Consensus       486 ~~~~~-----~~~~~~-------------~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~  547 (643)
                      ..+..     ...+++             .+++++++.+.+.. +++....  ..+.....    +.|+++|+||+|+..
T Consensus        97 ~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~-~Ld~~~~--~~l~~l~~----~~~iilV~~K~Dl~~  169 (301)
T 2qnr_A           97 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH-GLKPLDV--AFMKAIHN----KVNIVPVIAKADTLT  169 (301)
T ss_dssp             TTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS-SCCHHHH--HHHHHHTT----TSCEEEEECCGGGSC
T ss_pred             HHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc-CCCHHHH--HHHHHHHh----cCCEEEEEEeCCCCC
Confidence            33311     002222             24556666554321 2222221  22222221    679999999999986


Q ss_pred             cccc---HHHHHHHHHHhCCCCcEEeeeccCCHHHHHHHHHHHHh
Q 006490          548 YTMA---VQDSARVTQELGIEPPIPVSMKSKDLNNVFSRIIWAAE  589 (643)
Q Consensus       548 ~~~~---~~~~~~~~~~~~~~~~~~vSa~~g~i~~l~~~l~~~~~  589 (643)
                      ..+.   .+.+.++++.+++. ++++||++||++++|..+.+.+.
T Consensus       170 ~~e~~~~~~~~~~~~~~~~~~-~~e~Sa~~~~v~e~f~~l~~~i~  213 (301)
T 2qnr_A          170 LKERERLKKRILDEIEEHNIK-IYHLPDAESDEDEDFKEQTRLLK  213 (301)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCC-CCCCC---------CHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCe-EEecCCccccccHHHHHHHHHhh
Confidence            5432   45677888889986 99999999999999999998775

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.39  E-value=1.1e-12  Score=132.78  Aligned_cols=108  Identities=16%  Similarity=0.091  Sum_probs=77.9

Q ss_pred             CCceeEEEEe-CCC-----CCcchhhhHHhhccCCEEEEEEECCCcc-cHHHHHHHHHHHHHhcCCCCcEEEEEecccCC
Q 006490           56 PDRVPVTIID-TSS-----SLENKGKLNEELKRADAVVLTYACNQQS-TLSRLSSYWLPELRRLEIKVPIIVAGCKLDLR  128 (643)
Q Consensus        56 ~~~~~~~i~D-t~G-----~~~~~~~~~~~~~~ad~il~v~d~~~~~-s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~  128 (643)
                      ++.+.+.++| +.|     ++++..+...+++++|++++|+|++++. ++..+. +|+..+...  ++|+++|+||+|+.
T Consensus        47 GD~V~~~~~~~~~g~I~~i~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~-~~l~~~~~~--~~~~ilV~NK~DL~  123 (302)
T 2yv5_A           47 GDYVWGEVVDPNTFAIEEVEERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLD-NMLVVYEYF--KVEPVIVFNKIDLL  123 (302)
T ss_dssp             TCEEEEEEEETTEEEEEEECCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHH-HHHHHHHHT--TCEEEEEECCGGGC
T ss_pred             ceEEEEEEccCCeEEEEeeCChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHH-HHHHHHHhC--CCCEEEEEEcccCC
Confidence            3445566666 333     5566677778999999999999999885 787766 588877765  89999999999997


Q ss_pred             CCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHHH
Q 006490          129 GDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY  169 (643)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  169 (643)
                      +...+ ...+....+.+.++  .+++++||++|.|++++++
T Consensus       124 ~~~~v-~~~~~~~~~~~~~g--~~~~~~SA~~g~gi~~L~~  161 (302)
T 2yv5_A          124 NEEEK-KELERWISIYRDAG--YDVLKVSAKTGEGIDELVD  161 (302)
T ss_dssp             CHHHH-HHHHHHHHHHHHTT--CEEEECCTTTCTTHHHHHH
T ss_pred             Ccccc-HHHHHHHHHHHHCC--CeEEEEECCCCCCHHHHHh
Confidence            53211 11122333334444  3699999999999998875

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.38  E-value=8.2e-13  Score=144.35  Aligned_cols=119  Identities=24%  Similarity=0.238  Sum_probs=82.4

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCCC----CCCCCCCCCee-eCCcc--------------------c--C----C
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVP----EKVPPVHAPTR-LPPDF--------------------Y--P----D   57 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~----~~~~~~~~~~~-~~~~~--------------------~--~----~   57 (643)
                      .....+|+|+|.+|||||||+|+|++..+.    ...+++..... .....                    .  +    .
T Consensus        62 ~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~  141 (550)
T 2qpt_A           62 FDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLN  141 (550)
T ss_dssp             TSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCT
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccc
Confidence            445689999999999999999999998863    22333211111 00000                    0  0    0


Q ss_pred             c-----------eeEEEEeCCCCCc-----------chhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCC
Q 006490           58 R-----------VPVTIIDTSSSLE-----------NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIK  115 (643)
Q Consensus        58 ~-----------~~~~i~Dt~G~~~-----------~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~  115 (643)
                      +           ..+.||||||+..           +......++..+|++|+|+|+++....+... .|+..++..  +
T Consensus       142 ~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~-~~l~~l~~~--~  218 (550)
T 2qpt_A          142 RFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFS-EAIGALRGH--E  218 (550)
T ss_dssp             TEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHH-HHHHHTTTC--G
T ss_pred             cceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHH-HHHHHHHhc--C
Confidence            0           3689999999875           3355567889999999999998754444433 477777655  6


Q ss_pred             CcEEEEEecccCCCC
Q 006490          116 VPIIVAGCKLDLRGD  130 (643)
Q Consensus       116 ~pvilv~NK~D~~~~  130 (643)
                      .|+++|+||+|+...
T Consensus       219 ~pvilVlNK~Dl~~~  233 (550)
T 2qpt_A          219 DKIRVVLNKADMVET  233 (550)
T ss_dssp             GGEEEEEECGGGSCH
T ss_pred             CCEEEEEECCCccCH
Confidence            899999999998753

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.38  E-value=1.5e-12  Score=144.96  Aligned_cols=159  Identities=16%  Similarity=0.097  Sum_probs=100.7

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe--ee-------------------------------------
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT--RL-------------------------------------   50 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~--~~-------------------------------------   50 (643)
                      ....+|+|+|++|+|||||+|+|++..+.+...+..+..  .+                                     
T Consensus        49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~  128 (772)
T 3zvr_A           49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  128 (772)
T ss_dssp             GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence            345689999999999999999999987633222111100  00                                     


Q ss_pred             ------------CCc-ccCCceeEEEEeCCCCCcch-------------hhhHHhh-ccCCEEEEEEECCCcccHHHHHH
Q 006490           51 ------------PPD-FYPDRVPVTIIDTSSSLENK-------------GKLNEEL-KRADAVVLTYACNQQSTLSRLSS  103 (643)
Q Consensus        51 ------------~~~-~~~~~~~~~i~Dt~G~~~~~-------------~~~~~~~-~~ad~il~v~d~~~~~s~~~~~~  103 (643)
                                  ... .......+.|+||||+....             .....++ ..+|++++|+|++......+.. 
T Consensus       129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l-  207 (772)
T 3zvr_A          129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL-  207 (772)
T ss_dssp             HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH-
T ss_pred             cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH-
Confidence                        000 01223458899999986511             1222344 5789999999998764433332 


Q ss_pred             HHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhh-HH-HHhhcccceEEEeCcccCCChhHHHHHHHHH
Q 006490          104 YWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMG-PI-MQQFREIETCVECSATTMIQVPDVFYYAQKA  174 (643)
Q Consensus       104 ~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~  174 (643)
                      .++..+...  ++|+|+|+||+|+...... .. .... .. ...++ ..+++++||++|.|+++|++.+.+.
T Consensus       208 ~ll~~L~~~--g~pvIlVlNKiDlv~~~~~-~~-~il~~~~~~l~lg-~~~VV~iSA~~G~GvdeL~eaI~~e  275 (772)
T 3zvr_A          208 KIAKEVDPQ--GQRTIGVITKLDLMDEGTD-AR-DVLENKLLPLRRG-YIGVVNRSQKDIDGKKDITAALAAE  275 (772)
T ss_dssp             HHHHHHCTT--CSSEEEEEECTTSSCTTCC-SH-HHHTTCSSCCSSC-EEECCCCCCEESSSSEEHHHHHHHH
T ss_pred             HHHHHHHhc--CCCEEEEEeCcccCCcchh-hH-HHHHHHhhhhhcc-CCceEEecccccccchhHHHHHHHH
Confidence            356666655  7999999999999765332 11 1111 00 00112 2357889999999999999998873

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.38  E-value=3.1e-13  Score=141.82  Aligned_cols=160  Identities=17%  Similarity=0.130  Sum_probs=78.1

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCC-------CCCCeeeCCccc--CCceeEEEEeCCCCCcchh-------
Q 006490           12 GVRVVVVGDRGTGKSSLIAAAATESVPEK-VPP-------VHAPTRLPPDFY--PDRVPVTIIDTSSSLENKG-------   74 (643)
Q Consensus        12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~~-~~~-------~~~~~~~~~~~~--~~~~~~~i~Dt~G~~~~~~-------   74 (643)
                      .++|+|+|++|||||||+|+|++..+... ..+       +.....+...+.  .....+++|||+|+.....       
T Consensus        31 sf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~  110 (418)
T 2qag_C           31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP  110 (418)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CHH
T ss_pred             CEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHH
Confidence            46899999999999999999998775211 111       111111222222  2234689999999875311       


Q ss_pred             h------------------hHHhhccCCEEEEEEECCCc-ccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccch
Q 006490           75 K------------------LNEELKRADAVVLTYACNQQ-STLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS  135 (643)
Q Consensus        75 ~------------------~~~~~~~ad~il~v~d~~~~-~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~  135 (643)
                      .                  ...++.++++.+++|+.... .+++.....|+..+.   .++|+|+|+||+|+........
T Consensus       111 i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~---~~v~iIlVinK~Dll~~~ev~~  187 (418)
T 2qag_C          111 VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH---EKVNIIPLIAKADTLTPEECQQ  187 (418)
T ss_dssp             HHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT---TTSEEEEEEESTTSSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh---ccCcEEEEEEcccCccHHHHHH
Confidence            1                  01234455554444443332 345555445777765   3789999999999875433311


Q ss_pred             hhhhhhHHHHhhcccceEEEeCcccCCChhHHHHHHHHHHh
Q 006490          136 LEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVL  176 (643)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~  176 (643)
                      ....+...+...+  .+++++||+++.++.+++..+...++
T Consensus       188 ~k~~i~~~~~~~~--i~~~~~sa~~~~~v~~~~~~l~~~iP  226 (418)
T 2qag_C          188 FKKQIMKEIQEHK--IKIYEFPETDDEEENKLVKKIKDRLP  226 (418)
T ss_dssp             HHHHHHHHHHHHT--CCCCCCC-----------------CC
T ss_pred             HHHHHHHHHHHcC--CeEEeCCCCCCcCHHHHHHHHHhhCC
Confidence            1233444445554  36899999999999988877665543

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.38  E-value=6.2e-12  Score=141.43  Aligned_cols=118  Identities=11%  Similarity=-0.013  Sum_probs=80.1

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCC--CCC---CCC-------------CCcccceEEEEEEcC-----CCcEEEEEE
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERP--FSE---NYA-------------PTTGEQYAVNVVDQP-----GGNKKTLIL  477 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~--~~~---~~~-------------~t~~~~~~~~~v~~~-----g~~~~~~i~  477 (643)
                      .+..+|+|+|.+|+|||||+++|+...  +..   +..             ..++.......+.+.     +....+.+|
T Consensus         8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li   87 (704)
T 2rdo_7            8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII   87 (704)
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence            345789999999999999999997531  110   000             000111111122222     233678899


Q ss_pred             ecCCchhhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC
Q 006490          478 QEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP  547 (643)
Q Consensus       478 d~~g~~~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~  547 (643)
                      ||+|+..+...  ...+++.||++|+|+|++++.+.+....| ..+...      ++|+++|+||+|+..
T Consensus        88 DTPG~~df~~~--~~~~l~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~~------~ip~ilviNKiD~~~  148 (704)
T 2rdo_7           88 DTPGHVDFTIE--VERSMRVLDGAVMVYCAVGGVQPQSETVW-RQANKY------KVPRIAFVNKMDRMG  148 (704)
T ss_pred             eCCCccchHHH--HHHHHHHCCEEEEEEeCCCCCcHHHHHHH-HHHHHc------CCCEEEEEeCCCccc
Confidence            99999887665  67889999999999999998765544434 333333      799999999999865

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.37  E-value=8.2e-13  Score=138.64  Aligned_cols=157  Identities=15%  Similarity=0.152  Sum_probs=79.1

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC--------CCcccceEEEEEEcCCCcEEEEEEecCCchhhh-------h
Q 006490          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYA--------PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK-------K  487 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~--------~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~-------~  487 (643)
                      .++|+|+|++|||||||+|+|++..+.....        +|+........+...+....+.+||++|.....       .
T Consensus        31 sf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~  110 (418)
T 2qag_C           31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP  110 (418)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CHH
T ss_pred             CEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHH
Confidence            4789999999999999999999987632221        122211111122223334467789999975421       1


Q ss_pred             hhc----------------cHHhhccCCE--EEEEEeCCChhhHHHH-HHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCc
Q 006490          488 ILS----------------NKEALASCDV--TIFVYDSSDEYSWKRT-KELLVEVARLGEDSGYGVPCLLIASKDDLKPY  548 (643)
Q Consensus       488 ~~~----------------~~~~~~~ad~--illv~D~s~~~s~~~~-~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~  548 (643)
                      +..                +...+.++++  ++++.+.+. .++... ..|+..+..       +.|+|+|+||+|+...
T Consensus       111 i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~-~~L~~~d~~~lk~L~~-------~v~iIlVinK~Dll~~  182 (418)
T 2qag_C          111 VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSG-HGLKPLDIEFMKRLHE-------KVNIIPLIAKADTLTP  182 (418)
T ss_dssp             HHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-C-CSCCHHHHHHHHHHTT-------TSEEEEEEESTTSSCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcc-cCCCHHHHHHHHHHhc-------cCcEEEEEEcccCccH
Confidence            100                1123445554  444444431 223333 245555531       7899999999999875


Q ss_pred             ccc---HHHHHHHHHHhCCCCcEEeeeccC-CHHHHHHHHHHHH
Q 006490          549 TMA---VQDSARVTQELGIEPPIPVSMKSK-DLNNVFSRIIWAA  588 (643)
Q Consensus       549 ~~~---~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l~~~l~~~~  588 (643)
                      ...   .+.+.+.+...++. ++++||+++ ++++++..+...+
T Consensus       183 ~ev~~~k~~i~~~~~~~~i~-~~~~sa~~~~~v~~~~~~l~~~i  225 (418)
T 2qag_C          183 EECQQFKKQIMKEIQEHKIK-IYEFPETDDEEENKLVKKIKDRL  225 (418)
T ss_dssp             HHHHHHHHHHHHHHHHHTCC-CCCCC-----------------C
T ss_pred             HHHHHHHHHHHHHHHHcCCe-EEeCCCCCCcCHHHHHHHHHhhC
Confidence            444   25667777788887 899999999 9999888887753

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.36  E-value=1.2e-12  Score=135.20  Aligned_cols=152  Identities=16%  Similarity=0.082  Sum_probs=88.9

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcC------C--CCCCCCCCC----------------------------------CC
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATE------S--VPEKVPPVH----------------------------------AP   47 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~------~--~~~~~~~~~----------------------------------~~   47 (643)
                      +....|+|+|+||||||||+|+|++.      +  +....|...                                  ++
T Consensus        72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~  151 (349)
T 2www_A           72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGV  151 (349)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccc
Confidence            34688999999999999999999862      1  000001000                                  00


Q ss_pred             ee--eC--CcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEe
Q 006490           48 TR--LP--PDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGC  123 (643)
Q Consensus        48 ~~--~~--~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~N  123 (643)
                      ++  ..  ..+...++.+.++||+|+...   .......+|++++|+|+......+.+.    ..+  .  ..|.++|+|
T Consensus       152 tr~~~~~~~~~~~~~~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~----~~i--l--~~~~ivVlN  220 (349)
T 2www_A          152 TRTTNEAILLCEGAGYDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIK----RGI--I--EMADLVAVT  220 (349)
T ss_dssp             CTTHHHHHHHHHHTTCSEEEEECCCC--C---HHHHHTTCSEEEEEECCC------------------C--CSCSEEEEC
T ss_pred             hHHHHHHHHhhccCCCCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhH----HHH--H--hcCCEEEEe
Confidence            00  00  011235678999999997532   234567899999999987654322221    111  2  568899999


Q ss_pred             cccCCCCCccchhhhhhhHHHHhhc--------ccceEEEeCcccCCChhHHHHHHHHHH
Q 006490          124 KLDLRGDHNATSLEEVMGPIMQQFR--------EIETCVECSATTMIQVPDVFYYAQKAV  175 (643)
Q Consensus       124 K~D~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~Sa~~~~gi~~l~~~i~~~~  175 (643)
                      |+|+.....   .......+...+.        ...+++.+||++|.|++++++++.+.+
T Consensus       221 K~Dl~~~~~---~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~  277 (349)
T 2www_A          221 KSDGDLIVP---ARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQ  277 (349)
T ss_dssp             CCSGGGHHH---HHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             eecCCCchh---HHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHH
Confidence            999853210   0111222222111        013579999999999999999998765

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.36  E-value=8.3e-12  Score=127.94  Aligned_cols=85  Identities=19%  Similarity=0.191  Sum_probs=56.9

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC--CcccceEEEEEEcCCCc---------------EEEEEEecCCchhh
Q 006490          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAP--TTGEQYAVNVVDQPGGN---------------KKTLILQEIPEEGV  485 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~--t~~~~~~~~~v~~~g~~---------------~~~~i~d~~g~~~~  485 (643)
                      .++|+|+|.||||||||+|+|++........|  |.....  -.+..++..               ..+.+||++|....
T Consensus         2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~--g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~   79 (363)
T 1jal_A            2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNT--GVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAG   79 (363)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCS--SEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceE--EEEecCCcccceeeeeecccceeeeEEEEEECCCCccc
Confidence            36899999999999999999999774322223  322222  234455321               46789999997654


Q ss_pred             h----hh-hccHHhhccCCEEEEEEeCCC
Q 006490          486 K----KI-LSNKEALASCDVTIFVYDSSD  509 (643)
Q Consensus       486 ~----~~-~~~~~~~~~ad~illv~D~s~  509 (643)
                      .    .+ .+...+++.+|++++|+|+++
T Consensus        80 a~~~~gl~~~fl~~ir~ad~il~VvD~~~  108 (363)
T 1jal_A           80 ASKGEGLGNKFLANIRETDAIGHVVRCFE  108 (363)
T ss_dssp             HHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred             ccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence            2    22 123567899999999999986

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.35  E-value=2.5e-13  Score=140.97  Aligned_cols=106  Identities=12%  Similarity=0.035  Sum_probs=71.9

Q ss_pred             CceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchh
Q 006490           57 DRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSL  136 (643)
Q Consensus        57 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~  136 (643)
                      .++.+.||||||...   .....+..+|++|+|+|.........+.        ....++|+++|+||+|+.....   .
T Consensus       170 ~~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~--------~~~~~~p~ivVlNK~Dl~~~~~---~  235 (355)
T 3p32_A          170 AGFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIK--------KGVLELADIVVVNKADGEHHKE---A  235 (355)
T ss_dssp             TTCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCC--------TTSGGGCSEEEEECCCGGGHHH---H
T ss_pred             CCCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHH--------HhHhhcCCEEEEECCCCcChhH---H
Confidence            568899999999654   2334568999999999987655443221        1112569999999999864211   1


Q ss_pred             hhhhhHHHHhh---c-----ccceEEEeCcccCCChhHHHHHHHHHHh
Q 006490          137 EEVMGPIMQQF---R-----EIETCVECSATTMIQVPDVFYYAQKAVL  176 (643)
Q Consensus       137 ~~~~~~~~~~~---~-----~~~~~~~~Sa~~~~gi~~l~~~i~~~~~  176 (643)
                      ......+...+   +     ...+++++||++|.||+++++++.+.+.
T Consensus       236 ~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~  283 (355)
T 3p32_A          236 RLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQ  283 (355)
T ss_dssp             HHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHH
Confidence            12222333322   1     1146999999999999999999988764

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.35  E-value=2.4e-12  Score=143.28  Aligned_cols=156  Identities=15%  Similarity=0.121  Sum_probs=99.2

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-CCcccce----------------------------------------
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQY----------------------------------------  460 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~-~t~~~~~----------------------------------------  460 (643)
                      ...+|+|+|.+|+|||||+|+|+|..+..... ++|+.-.                                        
T Consensus        50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~  129 (772)
T 3zvr_A           50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  129 (772)
T ss_dssp             CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence            45699999999999999999999988743332 2222111                                        


Q ss_pred             ----------EEEEEEcCCCcEEEEEEecCCchh-------------hhhhhccHHhh-ccCCEEEEEEeCCChhhHHHH
Q 006490          461 ----------AVNVVDQPGGNKKTLILQEIPEEG-------------VKKILSNKEAL-ASCDVTIFVYDSSDEYSWKRT  516 (643)
Q Consensus       461 ----------~~~~v~~~g~~~~~~i~d~~g~~~-------------~~~~~~~~~~~-~~ad~illv~D~s~~~s~~~~  516 (643)
                                ....+..+ ....+.++||+|-..             +..+  ...++ ..+|++++|+|++++..-+..
T Consensus       130 g~~~~is~~~i~l~I~~P-~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~l--v~~yi~~~aDlIL~VVDAs~~~~~~d~  206 (772)
T 3zvr_A          130 GTNKGISPVPINLRVYSP-HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDM--LMQFVTKENCLILAVSPANSDLANSDA  206 (772)
T ss_dssp             CSTTCCCSCCEEEEEEET-TCCSEEEEECCCCCCCCSSCCCCHHHHHHHHH--HHHHHTSTTEEEEEEEETTSCSSSCHH
T ss_pred             CCCCcccccceEEEEecC-CCCceEEEECCCcccCCCCCCcHHHHHHHHHH--HHHHHhcCCcEEEEEEcCCCCcchhHH
Confidence                      11112222 223466799999432             1222  23334 589999999999976442333


Q ss_pred             HHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHH----hCCCCcEEeeeccC-CHHHHHHHHHHH
Q 006490          517 KELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQE----LGIEPPIPVSMKSK-DLNNVFSRIIWA  587 (643)
Q Consensus       517 ~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~vSa~~g-~i~~l~~~l~~~  587 (643)
                      ..++..+...      +.|+++|+||+|+............ .+.    +++.+++++||++| |++++++.+.+.
T Consensus       207 l~ll~~L~~~------g~pvIlVlNKiDlv~~~~~~~~il~-~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e  275 (772)
T 3zvr_A          207 LKIAKEVDPQ------GQRTIGVITKLDLMDEGTDARDVLE-NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  275 (772)
T ss_dssp             HHHHHHHCTT------CSSEEEEEECTTSSCTTCCSHHHHT-TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred             HHHHHHHHhc------CCCEEEEEeCcccCCcchhhHHHHH-HHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence            2344444332      7999999999999865432211111 111    24446889999999 999999999873

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.35  E-value=7.9e-13  Score=127.86  Aligned_cols=153  Identities=12%  Similarity=0.058  Sum_probs=92.4

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCCC-------CCCCCCC---------CCee--e--CC--cc----------cCCce
Q 006490           12 GVRVVVVGDRGTGKSSLIAAAATESVP-------EKVPPVH---------APTR--L--PP--DF----------YPDRV   59 (643)
Q Consensus        12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~-------~~~~~~~---------~~~~--~--~~--~~----------~~~~~   59 (643)
                      ..+|+|+|.+|||||||+++|+.....       ...++..         +...  .  +.  .+          ...+.
T Consensus        30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (221)
T 2wsm_A           30 TVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSDC  109 (221)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTTC
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCCC
Confidence            468999999999999999999865211       0111100         0000  0  00  01          22456


Q ss_pred             eEEEEeCCCCCcchhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhh
Q 006490           60 PVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEV  139 (643)
Q Consensus        60 ~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~  139 (643)
                      .+.+|||+|+.....   .+...++.+++|+|++.....  .   | ......  ++|+++|+||+|+...... ...+ 
T Consensus       110 d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~~--~---~-~~~~~~--~~~~iiv~NK~Dl~~~~~~-~~~~-  176 (221)
T 2wsm_A          110 DLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDV--V---E-KHPEIF--RVADLIVINKVALAEAVGA-DVEK-  176 (221)
T ss_dssp             SEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTH--H---H-HCHHHH--HTCSEEEEECGGGHHHHTC-CHHH-
T ss_pred             CEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcchh--h---h-hhhhhh--hcCCEEEEecccCCcchhh-HHHH-
Confidence            799999999521111   111357899999998765421  1   1 111222  5799999999998542111 1222 


Q ss_pred             hhHHHHhhcccceEEEeCcccCCChhHHHHHHHHHHhC
Q 006490          140 MGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLH  177 (643)
Q Consensus       140 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~~  177 (643)
                      +......++...+++++||++|.|++++++++.+.+..
T Consensus       177 ~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~  214 (221)
T 2wsm_A          177 MKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNV  214 (221)
T ss_dssp             HHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred             HHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence            23333333333479999999999999999999887643

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.34  E-value=2.7e-11  Score=124.18  Aligned_cols=82  Identities=16%  Similarity=0.234  Sum_probs=55.1

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCCCCCeeeCCcccCC-----------------ceeEEEEeCCCCCcch
Q 006490           12 GVRVVVVGDRGTGKSSLIAAAATESV-PEKVPPVHAPTRLPPDFYPD-----------------RVPVTIIDTSSSLENK   73 (643)
Q Consensus        12 ~~kI~lvG~~~vGKSsL~n~l~~~~~-~~~~~~~~~~~~~~~~~~~~-----------------~~~~~i~Dt~G~~~~~   73 (643)
                      .++|+|+|.||||||||+|+|++..+ +.++|.++..... ..+...                 +..+.+|||||+..+.
T Consensus         2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~-g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a   80 (363)
T 1jal_A            2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNT-GVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA   80 (363)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCS-SEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceE-EEEecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence            37899999999999999999999773 3334432211111 111111                 2579999999998653


Q ss_pred             h----h---hHHhhccCCEEEEEEECCC
Q 006490           74 G----K---LNEELKRADAVVLTYACNQ   94 (643)
Q Consensus        74 ~----~---~~~~~~~ad~il~v~d~~~   94 (643)
                      .    +   .-.+++++|++++|+|+++
T Consensus        81 ~~~~gl~~~fl~~ir~ad~il~VvD~~~  108 (363)
T 1jal_A           81 SKGEGLGNKFLANIRETDAIGHVVRCFE  108 (363)
T ss_dssp             HHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred             cccchHHHHHHHHHHhcCeEEEEEecCC
Confidence            2    2   2246899999999999986

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.34  E-value=2.8e-12  Score=132.44  Aligned_cols=153  Identities=16%  Similarity=0.182  Sum_probs=88.2

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcC------CCC-CCCCCCcc-------------------cceEEEEEE-------c
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLER------PFS-ENYAPTTG-------------------EQYAVNVVD-------Q  467 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~------~~~-~~~~~t~~-------------------~~~~~~~v~-------~  467 (643)
                      +....|+|+|+||||||||+|+|++.      +.. ...+|++.                   ....+....       +
T Consensus        72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~  151 (349)
T 2www_A           72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGV  151 (349)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccc
Confidence            45789999999999999999999962      111 11122111                   111111000       0


Q ss_pred             C-----------CCcEEEEEEecCCchhhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcE
Q 006490          468 P-----------GGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPC  536 (643)
Q Consensus       468 ~-----------g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pv  536 (643)
                      .           .....+.++||+|....     .......+|++++|+|++++...+.+..   .+  .      ..|.
T Consensus       152 tr~~~~~~~~~~~~~~~~iliDT~Gi~~~-----~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i--l------~~~~  215 (349)
T 2www_A          152 TRTTNEAILLCEGAGYDIILIETVGVGQS-----EFAVADMVDMFVLLLPPAGGDELQGIKR---GI--I------EMAD  215 (349)
T ss_dssp             CTTHHHHHHHHHHTTCSEEEEECCCC--C-----HHHHHTTCSEEEEEECCC-----------------C------CSCS
T ss_pred             hHHHHHHHHhhccCCCCEEEEECCCcchh-----hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH--H------hcCC
Confidence            0           02235678999995311     1234578999999999987643222111   11  1      5688


Q ss_pred             EEEEeCCCCCCccccHHHHHHHHHHh---------CCCCcEEeeeccC-CHHHHHHHHHHHHh
Q 006490          537 LLIASKDDLKPYTMAVQDSARVTQEL---------GIEPPIPVSMKSK-DLNNVFSRIIWAAE  589 (643)
Q Consensus       537 ilv~NK~Dl~~~~~~~~~~~~~~~~~---------~~~~~~~vSa~~g-~i~~l~~~l~~~~~  589 (643)
                      ++|+||+|+............+...+         ..++++++||++| |+++++++|.+.+.
T Consensus       216 ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~  278 (349)
T 2www_A          216 LVAVTKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD  278 (349)
T ss_dssp             EEEECCCSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEEEeeecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence            99999999875322112233333322         1235799999999 99999999998764

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.32  E-value=2e-12  Score=134.22  Aligned_cols=153  Identities=11%  Similarity=0.125  Sum_probs=94.9

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcC------CCC-CCCCCCccc-----------------ceEEEEEEcCC-------
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLER------PFS-ENYAPTTGE-----------------QYAVNVVDQPG-------  469 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~------~~~-~~~~~t~~~-----------------~~~~~~v~~~g-------  469 (643)
                      ....+|+|+|.||||||||+++|...      +.. ...+|....                 ...+.....++       
T Consensus        77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~  156 (355)
T 3p32_A           77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGV  156 (355)
T ss_dssp             CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccch
Confidence            45689999999999999999999732      111 011111000                 00011111110       


Q ss_pred             -------------CcEEEEEEecCCchhhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcE
Q 006490          470 -------------GNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPC  536 (643)
Q Consensus       470 -------------~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pv  536 (643)
                                   ....+.++||+|....     ....+..+|++++|+|++..+..+.+...   +      .  ..|+
T Consensus       157 ~~~t~d~i~~~~~~~~~~iiiDTpGi~~~-----~~~~~~~aD~vl~V~d~~~~~~~~~l~~~---~------~--~~p~  220 (355)
T 3p32_A          157 TRATRETVVLLEAAGFDVILIETVGVGQS-----EVAVANMVDTFVLLTLARTGDQLQGIKKG---V------L--ELAD  220 (355)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEEECSCSSH-----HHHHHTTCSEEEEEEESSTTCTTTTCCTT---S------G--GGCS
T ss_pred             hHHHHHHHHHHhhCCCCEEEEeCCCCCcH-----HHHHHHhCCEEEEEECCCCCccHHHHHHh---H------h--hcCC
Confidence                         1346778999994322     22345899999999999876543222210   0      0  5799


Q ss_pred             EEEEeCCCCCCccccHHHHHHHHHH---h-----CC-CCcEEeeeccC-CHHHHHHHHHHHHh
Q 006490          537 LLIASKDDLKPYTMAVQDSARVTQE---L-----GI-EPPIPVSMKSK-DLNNVFSRIIWAAE  589 (643)
Q Consensus       537 ilv~NK~Dl~~~~~~~~~~~~~~~~---~-----~~-~~~~~vSa~~g-~i~~l~~~l~~~~~  589 (643)
                      ++|+||+|+...........++.+.   .     ++ .++++|||++| |++++++.|.+.+.
T Consensus       221 ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~  283 (355)
T 3p32_A          221 IVVVNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQ  283 (355)
T ss_dssp             EEEEECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHH
Confidence            9999999997543333333344433   2     22 46999999999 99999999999764

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.31  E-value=3.4e-12  Score=139.50  Aligned_cols=121  Identities=14%  Similarity=0.126  Sum_probs=82.0

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCC--CCC-CCCcccceEEEEE---------------------------------
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFS--ENY-APTTGEQYAVNVV---------------------------------  465 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~--~~~-~~t~~~~~~~~~v---------------------------------  465 (643)
                      ..++|+|+|.+|||||||+|+|++..+.  .++ .|++.. ......                                 
T Consensus        64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~-~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~  142 (550)
T 2qpt_A           64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDC-FVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR  142 (550)
T ss_dssp             SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCS-EEEEECCSSSEEECCC------------------CCCTT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccce-EEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence            4679999999999999999999999875  233 244422 111000                                 


Q ss_pred             ----EcCCC-cEEEEEEecCCchh-----------hhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCC
Q 006490          466 ----DQPGG-NKKTLILQEIPEEG-----------VKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGED  529 (643)
Q Consensus       466 ----~~~g~-~~~~~i~d~~g~~~-----------~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~  529 (643)
                          ..++. ...+.+|||+|...           +...  +..++..+|++|+|+|+++.........++..+...   
T Consensus       143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~--~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~---  217 (550)
T 2qpt_A          143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAV--LRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGH---  217 (550)
T ss_dssp             EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHH--HHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTC---
T ss_pred             ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHH--HHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhc---
Confidence                00000 02467899999754           2233  456789999999999998854445556666655433   


Q ss_pred             CCCCCcEEEEEeCCCCCCcccc
Q 006490          530 SGYGVPCLLIASKDDLKPYTMA  551 (643)
Q Consensus       530 ~~~~~pvilv~NK~Dl~~~~~~  551 (643)
                         +.|+++|+||+|+....+.
T Consensus       218 ---~~pvilVlNK~Dl~~~~el  236 (550)
T 2qpt_A          218 ---EDKIRVVLNKADMVETQQL  236 (550)
T ss_dssp             ---GGGEEEEEECGGGSCHHHH
T ss_pred             ---CCCEEEEEECCCccCHHHH
Confidence               6899999999999875433

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.31  E-value=1.2e-12  Score=126.57  Aligned_cols=154  Identities=10%  Similarity=0.058  Sum_probs=95.2

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCC------CCCCCcc--------cceEEEEEEcCC----------------Cc
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSE------NYAPTTG--------EQYAVNVVDQPG----------------GN  471 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~------~~~~t~~--------~~~~~~~v~~~g----------------~~  471 (643)
                      ...+|+|+|.+|||||||+++|++.....      ..++.++        .+.....++.++                ..
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD  108 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence            45789999999999999999999752211      0111110        012233344432                12


Q ss_pred             EEEEEEecCCchhhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcc-c
Q 006490          472 KKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-M  550 (643)
Q Consensus       472 ~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~-~  550 (643)
                      ..+.++||+|.-....     .....++.+++|+|++++...  ...+.   ...      +.|+++|+||+|+.... .
T Consensus       109 ~d~iiidt~G~~~~~~-----~~~~~~~~~i~vvd~~~~~~~--~~~~~---~~~------~~~~iiv~NK~Dl~~~~~~  172 (221)
T 2wsm_A          109 CDLLLIENVGNLICPV-----DFDLGENYRVVMVSVTEGDDV--VEKHP---EIF------RVADLIVINKVALAEAVGA  172 (221)
T ss_dssp             CSEEEEEEEEBSSGGG-----GCCCSCSEEEEEEEGGGCTTH--HHHCH---HHH------HTCSEEEEECGGGHHHHTC
T ss_pred             CCEEEEeCCCCCCCCc-----hhccccCcEEEEEeCCCcchh--hhhhh---hhh------hcCCEEEEecccCCcchhh
Confidence            3567899998511111     111357899999999876431  11111   111      57899999999986532 2


Q ss_pred             cHHHHHHHHHHhC-CCCcEEeeeccC-CHHHHHHHHHHHHhCC
Q 006490          551 AVQDSARVTQELG-IEPPIPVSMKSK-DLNNVFSRIIWAAEHP  591 (643)
Q Consensus       551 ~~~~~~~~~~~~~-~~~~~~vSa~~g-~i~~l~~~l~~~~~~~  591 (643)
                      ..+...+..+.++ ..+++++||++| |+++++++|.+.+..+
T Consensus       173 ~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~  215 (221)
T 2wsm_A          173 DVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVH  215 (221)
T ss_dssp             CHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence            2344444555544 235899999999 9999999999987543

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.31  E-value=2.4e-12  Score=143.44  Aligned_cols=113  Identities=19%  Similarity=0.241  Sum_probs=84.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC--CC-----CCCCCCC-----------CCeeeCCcccCCceeEEEEeCCCCCcchhh
Q 006490           14 RVVVVGDRGTGKSSLIAAAATES--VP-----EKVPPVH-----------APTRLPPDFYPDRVPVTIIDTSSSLENKGK   75 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~~~--~~-----~~~~~~~-----------~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~   75 (643)
                      +|+|+|+.++|||||..+|+...  +.     .....+.           +.......+.++++.++|+||||+.+|...
T Consensus         4 Ni~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~E   83 (638)
T 3j25_A            4 NIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLAE   83 (638)
T ss_dssp             CCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHHH
Confidence            49999999999999999997432  11     0000000           001133445678899999999999999999


Q ss_pred             hHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCC
Q 006490           76 LNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD  130 (643)
Q Consensus        76 ~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~  130 (643)
                      ...+++-+|++|+|+|+...-..+..  ..++.+.+.  ++|.|+++||+|....
T Consensus        84 v~raL~~~DgavlVVDa~~GV~~qT~--~v~~~a~~~--~lp~i~~INKmDr~~a  134 (638)
T 3j25_A           84 VYRSLSVLDGAILLISAKDGVQAQTR--ILFHALRKM--GIPTIFFINKIDQNGI  134 (638)
T ss_dssp             HHHHHTTCSEEECCEESSCTTCSHHH--HHHHHHHHH--TCSCEECCEECCSSSC
T ss_pred             HHHHHHHhCEEEEEEeCCCCCcHHHH--HHHHHHHHc--CCCeEEEEeccccccC
Confidence            99999999999999998776544443  356666666  7999999999998654

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.30  E-value=1.8e-12  Score=133.80  Aligned_cols=107  Identities=13%  Similarity=0.089  Sum_probs=68.0

Q ss_pred             CCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccch
Q 006490           56 PDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS  135 (643)
Q Consensus        56 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~  135 (643)
                      ..++.+.||||||......   .....+|++++|+|++.......+.    .  ...  ++|+++|+||+|+.....   
T Consensus       146 ~~~~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~----~--~~~--~~p~ivv~NK~Dl~~~~~---  211 (341)
T 2p67_A          146 AAGYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIK----K--GLM--EVADLIVINKDDGDNHTN---  211 (341)
T ss_dssp             HTTCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCC----H--HHH--HHCSEEEECCCCTTCHHH---
T ss_pred             ccCCCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHH----H--hhh--cccCEEEEECCCCCChHH---
Confidence            3467899999999765432   3568999999999986553321111    0  111  468899999999864311   


Q ss_pred             hhhhhhHHHH---hhcc-----cceEEEeCcccCCChhHHHHHHHHHHh
Q 006490          136 LEEVMGPIMQ---QFRE-----IETCVECSATTMIQVPDVFYYAQKAVL  176 (643)
Q Consensus       136 ~~~~~~~~~~---~~~~-----~~~~~~~Sa~~~~gi~~l~~~i~~~~~  176 (643)
                      .......+..   .++.     ..+++++||++|.|++++++.+.+.+.
T Consensus       212 ~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          212 VAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             HHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            1111122222   2221     236899999999999999999988653

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.29  E-value=3.2e-12  Score=131.46  Aligned_cols=119  Identities=12%  Similarity=0.072  Sum_probs=87.1

Q ss_pred             CceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECC----------CcccHHHHHHHHHHHHHhc--CCCCcEEEEEec
Q 006490           57 DRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACN----------QQSTLSRLSSYWLPELRRL--EIKVPIIVAGCK  124 (643)
Q Consensus        57 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~----------~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK  124 (643)
                      ..+.+.+|||+|++.+...+..++++++++|+|||++          +..++++... |+..+...  ..+.|+|||+||
T Consensus       181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~-~~~~i~~~~~~~~~piiLvgNK  259 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKE-LFDWVLKQPCFEKTSFMLFLNK  259 (354)
T ss_dssp             ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHH-HHHHHHTCGGGSSCEEEEEEEC
T ss_pred             cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHH-HHHHHHhccccCCCeEEEEEEC
Confidence            5688999999999999999999999999999999998          7888998874 66666542  358999999999


Q ss_pred             ccCCCCCcc-ch------------------hhhhhhHH-HHhh-------------cccceEEEeCcccCCChhHHHHHH
Q 006490          125 LDLRGDHNA-TS------------------LEEVMGPI-MQQF-------------REIETCVECSATTMIQVPDVFYYA  171 (643)
Q Consensus       125 ~D~~~~~~~-~~------------------~~~~~~~~-~~~~-------------~~~~~~~~~Sa~~~~gi~~l~~~i  171 (643)
                      +|+...... +.                  ..+....+ .++|             +....+++|||+++.||+++|+++
T Consensus       260 ~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v  339 (354)
T 2xtz_A          260 FDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLV  339 (354)
T ss_dssp             HHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHH
T ss_pred             cchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHH
Confidence            997532110 00                  01222333 3332             111236899999999999999998


Q ss_pred             HHHHh
Q 006490          172 QKAVL  176 (643)
Q Consensus       172 ~~~~~  176 (643)
                      .+.+.
T Consensus       340 ~~~I~  344 (354)
T 2xtz_A          340 DETLR  344 (354)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87754

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.29  E-value=7.8e-12  Score=124.24  Aligned_cols=165  Identities=19%  Similarity=0.119  Sum_probs=96.9

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHh-----cCCC--CCCCCCCCC-------------Cee-e-CCcc-----------
Q 006490            8 SSRTGVRVVVVGDRGTGKSSLIAAAA-----TESV--PEKVPPVHA-------------PTR-L-PPDF-----------   54 (643)
Q Consensus         8 ~~~~~~kI~lvG~~~vGKSsL~n~l~-----~~~~--~~~~~~~~~-------------~~~-~-~~~~-----------   54 (643)
                      ..++...++++|.+|||||||++.|.     +.+.  ....++...             ... . ....           
T Consensus        10 ~~~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (262)
T 1yrb_A           10 HGMASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYD   89 (262)
T ss_dssp             TTCCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHH
T ss_pred             CCcceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecHH
Confidence            35667889999999999999999998     4441  111111000             000 0 0000           


Q ss_pred             ---------------cCCceeEEEEeCCCCCcchhhhH------HhhccCCEEEEEEECCCcccHHHHHHHHH---HHHH
Q 006490           55 ---------------YPDRVPVTIIDTSSSLENKGKLN------EELKRADAVVLTYACNQQSTLSRLSSYWL---PELR  110 (643)
Q Consensus        55 ---------------~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~ad~il~v~d~~~~~s~~~~~~~~~---~~l~  110 (643)
                                     ....+.+.||||||+.+......      .++.. +++++|+|+....+.......+.   ....
T Consensus        90 ~~~~~~~~l~~~l~~~~~~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~  168 (262)
T 1yrb_A           90 RLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDL  168 (262)
T ss_dssp             HHHTTHHHHHHHHHHHHHHCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHH
T ss_pred             HHhhhHHHHHHHHHHHhhcCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhc
Confidence                           01235899999999865432211      24566 89999999765444433321111   1122


Q ss_pred             hcCCCCcEEEEEecccCCCCCccchhhhh---hh----HH-----------------HHhhcccceEEEeCcccCCChhH
Q 006490          111 RLEIKVPIIVAGCKLDLRGDHNATSLEEV---MG----PI-----------------MQQFREIETCVECSATTMIQVPD  166 (643)
Q Consensus       111 ~~~~~~pvilv~NK~D~~~~~~~~~~~~~---~~----~~-----------------~~~~~~~~~~~~~Sa~~~~gi~~  166 (643)
                      ..  ++|+++|+||+|+..........+.   ..    .+                 ...++...+++++||++|.|+++
T Consensus       169 ~~--~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~  246 (262)
T 1yrb_A          169 RL--GATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFED  246 (262)
T ss_dssp             HH--TSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHH
T ss_pred             cc--CCCeEEEEecccccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHH
Confidence            22  7899999999998753211000110   00    10                 13333223689999999999999


Q ss_pred             HHHHHHHHH
Q 006490          167 VFYYAQKAV  175 (643)
Q Consensus       167 l~~~i~~~~  175 (643)
                      +++++.+.+
T Consensus       247 l~~~i~~~~  255 (262)
T 1yrb_A          247 LETLAYEHY  255 (262)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999988765

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.27  E-value=7.3e-12  Score=128.84  Aligned_cols=120  Identities=16%  Similarity=0.107  Sum_probs=90.4

Q ss_pred             cCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECCC----------cccHHHHHHHHHHHHHhc--CCCCcEEEEE
Q 006490           55 YPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQ----------QSTLSRLSSYWLPELRRL--EIKVPIIVAG  122 (643)
Q Consensus        55 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~----------~~s~~~~~~~~~~~l~~~--~~~~pvilv~  122 (643)
                      ..+++.+.+|||+|++.+...+..++++++++|||||+++          ..++++... |+..+...  ..+.|+|||+
T Consensus       189 ~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~-~~~~i~~~~~~~~~piiLv~  267 (353)
T 1cip_A          189 TFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMK-LFDSICNNKWFTDTSIILFL  267 (353)
T ss_dssp             EETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHH-HHHHHHTCGGGTTSEEEEEE
T ss_pred             eeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHH-HHHHHHcCccccCCcEEEEE
Confidence            3457899999999999999999999999999999999998          567888774 66666542  3589999999


Q ss_pred             ecccCCCCC---------------ccchhhhhhhHHHHhh--------cccceEEEeCcccCCChhHHHHHHHHHHh
Q 006490          123 CKLDLRGDH---------------NATSLEEVMGPIMQQF--------REIETCVECSATTMIQVPDVFYYAQKAVL  176 (643)
Q Consensus       123 NK~D~~~~~---------------~~~~~~~~~~~~~~~~--------~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~  176 (643)
                      ||+|+....               .+ ..++....+...|        .....+++|||++|.||.++|+++.+.+.
T Consensus       268 NK~DL~~~ki~~~~l~~~fp~~~g~~-~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~  343 (353)
T 1cip_A          268 NKKDLFEEKIKKSPLTICYPEYAGSN-TYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVII  343 (353)
T ss_dssp             ECHHHHHHHHTTSCGGGTCTTCCSCS-CHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred             ECcCchhhhccccchhhcccccCCCC-CHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHH
Confidence            999985321               12 2333333333221        11235899999999999999999988765

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.27  E-value=9.2e-12  Score=128.06  Aligned_cols=121  Identities=12%  Similarity=0.031  Sum_probs=94.5

Q ss_pred             EEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEEEEeCCC----------hhhHHHHHHHHHHHHHhcCCCC
Q 006490          462 VNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSD----------EYSWKRTKELLVEVARLGEDSG  531 (643)
Q Consensus       462 ~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv~D~s~----------~~s~~~~~~~~~~i~~~~~~~~  531 (643)
                      ...+...  ...+.+||++|++.+..+  +..++++++++|+|+|+++          ..+++....|+..+....... 
T Consensus       185 ~~~~~~~--~~~l~iwDt~GQe~~r~~--w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~-  259 (353)
T 1cip_A          185 ETHFTFK--DLHFKMFDVGGQRSERKK--WIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFT-  259 (353)
T ss_dssp             EEEEEET--TEEEEEEEECCSGGGGGG--GGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGT-
T ss_pred             EEEEeeC--CeeEEEEeCCCchhhhHH--HHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCcccc-
Confidence            3344443  567889999999999888  8899999999999999998          567888888888887643222 


Q ss_pred             CCCcEEEEEeCCCCCCcc----------------ccHHHHHHHHHH-----------hCCCCcEEeeeccC-CHHHHHHH
Q 006490          532 YGVPCLLIASKDDLKPYT----------------MAVQDSARVTQE-----------LGIEPPIPVSMKSK-DLNNVFSR  583 (643)
Q Consensus       532 ~~~pvilv~NK~Dl~~~~----------------~~~~~~~~~~~~-----------~~~~~~~~vSa~~g-~i~~l~~~  583 (643)
                       +.|+||++||+|+...+                ...+.+..++..           .++ .+++|||++| ||+++|++
T Consensus       260 -~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~-~~~etSA~~~~nV~~vF~~  337 (353)
T 1cip_A          260 -DTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEI-YTHFTCATDTKNVQFVFDA  337 (353)
T ss_dssp             -TSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCE-EEEECCTTCHHHHHHHHHH
T ss_pred             -CCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCce-EEEEEECcCchhHHHHHHH
Confidence             79999999999985422                224556666652           233 4789999999 99999999


Q ss_pred             HHHHHh
Q 006490          584 IIWAAE  589 (643)
Q Consensus       584 l~~~~~  589 (643)
                      +.+.+.
T Consensus       338 v~~~i~  343 (353)
T 1cip_A          338 VTDVII  343 (353)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999875

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.25  E-value=1.1e-10  Score=120.47  Aligned_cols=155  Identities=14%  Similarity=0.143  Sum_probs=97.7

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhh-----hhhccHHhhc
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK-----KILSNKEALA  496 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~-----~~~~~~~~~~  496 (643)
                      ...+|+|||.||||||||+|+|++........|.++.+...-.+..+|  ..+.++|++|-..-.     ...+....++
T Consensus        71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~  148 (376)
T 4a9a_A           71 GVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVAR  148 (376)
T ss_dssp             SSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHHH
Confidence            457999999999999999999999775444446444444455566653  456779999842111     1123567789


Q ss_pred             cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcc---------ccHHHHHHHHHHhCCCCc
Q 006490          497 SCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT---------MAVQDSARVTQELGIEPP  567 (643)
Q Consensus       497 ~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~---------~~~~~~~~~~~~~~~~~~  567 (643)
                      .||++++|+|+++|..  ....+..++....... ...|.++++||+|.....         ...+....+...+.+. .
T Consensus       149 ~ad~il~vvD~~~p~~--~~~~i~~EL~~~~~~l-~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt-~  224 (376)
T 4a9a_A          149 TCNLLFIILDVNKPLH--HKQIIEKELEGVGIRL-NKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRIN-S  224 (376)
T ss_dssp             HCSEEEEEEETTSHHH--HHHHHHHHHHHTTEEE-TCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCC-S
T ss_pred             hcCccccccccCccHH--HHHHHHHHHHHhhHhh-ccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhccc-C
Confidence            9999999999999843  2333333443322110 157888999999975311         1145666677766665 2


Q ss_pred             EEeeeccC-CHHHHHH
Q 006490          568 IPVSMKSK-DLNNVFS  582 (643)
Q Consensus       568 ~~vSa~~g-~i~~l~~  582 (643)
                      -++-...+ ..+++.+
T Consensus       225 kpv~~~~nv~eddl~d  240 (376)
T 4a9a_A          225 AEIAFRCDATVDDLID  240 (376)
T ss_dssp             EEEEECSCCCHHHHHH
T ss_pred             CCeeecccCCHHHHHH
Confidence            33333444 5565544

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.24  E-value=1.1e-11  Score=142.08  Aligned_cols=114  Identities=11%  Similarity=0.121  Sum_probs=83.0

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCC--CCCCCC---------------C-CCCCeeeCCc--------------ccCCc
Q 006490           11 TGVRVVVVGDRGTGKSSLIAAAATES--VPEKVP---------------P-VHAPTRLPPD--------------FYPDR   58 (643)
Q Consensus        11 ~~~kI~lvG~~~vGKSsL~n~l~~~~--~~~~~~---------------~-~~~~~~~~~~--------------~~~~~   58 (643)
                      +..+|+|+|++|+|||||+++|+...  +....+               + +.........              .+..+
T Consensus        18 ~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~   97 (842)
T 1n0u_A           18 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS   97 (842)
T ss_dssp             GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred             cccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCC
Confidence            45689999999999999999998752  111000               0 0000001111              12347


Q ss_pred             eeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCC
Q 006490           59 VPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLR  128 (643)
Q Consensus        59 ~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~  128 (643)
                      +.++||||||+.++...+..+++.+|++|+|+|+++..+.+... .|.. +...  ++|+++|+||+|+.
T Consensus        98 ~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~-~~~~-~~~~--~~p~ilviNK~D~~  163 (842)
T 1n0u_A           98 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTET-VLRQ-ALGE--RIKPVVVINKVDRA  163 (842)
T ss_dssp             EEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHH-HHHH-HHHT--TCEEEEEEECHHHH
T ss_pred             ceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHH-HHHc--CCCeEEEEECCCcc
Confidence            88999999999999999999999999999999999998887764 3443 3333  79999999999986

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.23  E-value=2.4e-11  Score=125.39  Aligned_cols=82  Identities=17%  Similarity=0.208  Sum_probs=54.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCCC-CCeeeCCccc-------------------CCceeEEEEeCCCCCc
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATESV-PEKVPPVH-APTRLPPDFY-------------------PDRVPVTIIDTSSSLE   71 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~~~-~~~~~~~~-~~~~~~~~~~-------------------~~~~~~~i~Dt~G~~~   71 (643)
                      ++|+|+|.||||||||+|+|++... ..++|.++ ..+.-...+.                   ..+..+.+|||||+..
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~   81 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK   81 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence            5799999999999999999998652 23343321 1111001111                   1235799999999876


Q ss_pred             ch----hh---hHHhhccCCEEEEEEECCC
Q 006490           72 NK----GK---LNEELKRADAVVLTYACNQ   94 (643)
Q Consensus        72 ~~----~~---~~~~~~~ad~il~v~d~~~   94 (643)
                      +.    .+   ....++.+|++++|+|+++
T Consensus        82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~  111 (368)
T 2dby_A           82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP  111 (368)
T ss_dssp             CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred             cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence            42    12   2246899999999999975

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.23  E-value=9.3e-12  Score=127.95  Aligned_cols=116  Identities=10%  Similarity=0.036  Sum_probs=88.4

Q ss_pred             CcEEEEEEecCCchhhhhhhccHHhhccCCEEEEEEeCC----------ChhhHHHHHHHHHHHHHhcCCCCCCCcEEEE
Q 006490          470 GNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSS----------DEYSWKRTKELLVEVARLGEDSGYGVPCLLI  539 (643)
Q Consensus       470 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv~D~s----------~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv  539 (643)
                      ...++.+||++|++.+.++  +..++++++++|+|||++          +..+|+....|+..+.......  +.|++||
T Consensus       181 ~~v~l~iwDtaGQe~~r~~--~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~--~~piiLv  256 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRK--WIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE--KTSFMLF  256 (354)
T ss_dssp             ---EEEEEEECCSTTGGGG--TGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGS--SCEEEEE
T ss_pred             cceeeEEEECCCchhhhHH--HHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccC--CCeEEEE
Confidence            4567889999999999888  889999999999999998          7788999999998887643222  7999999


Q ss_pred             EeCCCCCCccc----------------------cHHHHHHHHHH-h-------------CCC-CcEEeeeccC-CHHHHH
Q 006490          540 ASKDDLKPYTM----------------------AVQDSARVTQE-L-------------GIE-PPIPVSMKSK-DLNNVF  581 (643)
Q Consensus       540 ~NK~Dl~~~~~----------------------~~~~~~~~~~~-~-------------~~~-~~~~vSa~~g-~i~~l~  581 (643)
                      +||+|+..++.                      ..+.+..++.. +             +.. .+++|||+++ ||+++|
T Consensus       257 gNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF  336 (354)
T 2xtz_A          257 LNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTF  336 (354)
T ss_dssp             EECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHH
T ss_pred             EECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHH
Confidence            99999854321                      12344455332 1             111 2589999999 999999


Q ss_pred             HHHHHHHh
Q 006490          582 SRIIWAAE  589 (643)
Q Consensus       582 ~~l~~~~~  589 (643)
                      +++.+.+.
T Consensus       337 ~~v~~~I~  344 (354)
T 2xtz_A          337 KLVDETLR  344 (354)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998764

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.23  E-value=8.1e-12  Score=128.79  Aligned_cols=113  Identities=13%  Similarity=0.104  Sum_probs=79.8

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchh-------hhHHhhccC
Q 006490           12 GVRVVVVGDRGTGKSSLIAAAATESV-PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKG-------KLNEELKRA   83 (643)
Q Consensus        12 ~~kI~lvG~~~vGKSsL~n~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~a   83 (643)
                      ..+|+|||.||||||||+|+|++... +.++|.++.. ...+.+...+.++.++||||+.....       ..-..++.+
T Consensus        72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~-~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~a  150 (376)
T 4a9a_A           72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLV-TVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTC  150 (376)
T ss_dssp             SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCC-EEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHC
T ss_pred             CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceee-eeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhc
Confidence            46899999999999999999999763 3446653332 24445666788999999999864321       122567899


Q ss_pred             CEEEEEEECCCcccHHHHHHHHHHHHHhcC---CCCcEEEEEecccCC
Q 006490           84 DAVVLTYACNQQSTLSRLSSYWLPELRRLE---IKVPIIVAGCKLDLR  128 (643)
Q Consensus        84 d~il~v~d~~~~~s~~~~~~~~~~~l~~~~---~~~pvilv~NK~D~~  128 (643)
                      |++++|+|+.++.....   .+..++....   ..+|.+++.||+|..
T Consensus       151 d~il~vvD~~~p~~~~~---~i~~EL~~~~~~l~~k~~~i~~nK~d~~  195 (376)
T 4a9a_A          151 NLLFIILDVNKPLHHKQ---IIEKELEGVGIRLNKTPPDILIKKKEKG  195 (376)
T ss_dssp             SEEEEEEETTSHHHHHH---HHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred             CccccccccCccHHHHH---HHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence            99999999887643222   2344444432   367889999999964

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.23  E-value=1.6e-13  Score=133.29  Aligned_cols=57  Identities=14%  Similarity=0.172  Sum_probs=43.2

Q ss_pred             CCcEEEEEeCCCCCCcc-ccHHHHHHHHHHhC-CCCcEEeeeccC-CHHHHHHHHHHHHh
Q 006490          533 GVPCLLIASKDDLKPYT-MAVQDSARVTQELG-IEPPIPVSMKSK-DLNNVFSRIIWAAE  589 (643)
Q Consensus       533 ~~pvilv~NK~Dl~~~~-~~~~~~~~~~~~~~-~~~~~~vSa~~g-~i~~l~~~l~~~~~  589 (643)
                      +.|.++|+||+|+.... ...+....+++.++ ..+++++||++| |++++|+.+.+.+.
T Consensus       164 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~  223 (226)
T 2hf9_A          164 KTADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVK  223 (226)
T ss_dssp             TTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             hcCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHH
Confidence            57889999999987542 23445555666553 235899999999 99999999988764

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.23  E-value=2.3e-11  Score=125.59  Aligned_cols=84  Identities=14%  Similarity=0.057  Sum_probs=55.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC--CcccceEEEEEEcCC-------------------CcEEEEEEecCCc
Q 006490          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAP--TTGEQYAVNVVDQPG-------------------GNKKTLILQEIPE  482 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~--t~~~~~~~~~v~~~g-------------------~~~~~~i~d~~g~  482 (643)
                      ++|+|+|.||||||||+|+|++........|  |.......  +..++                   ....+.+||++|.
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~--~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl   79 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGV--VPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL   79 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEE--EECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceee--EecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence            5799999999999999999998753222223  33333222  23331                   1235778999997


Q ss_pred             hhhh----hh-hccHHhhccCCEEEEEEeCCC
Q 006490          483 EGVK----KI-LSNKEALASCDVTIFVYDSSD  509 (643)
Q Consensus       483 ~~~~----~~-~~~~~~~~~ad~illv~D~s~  509 (643)
                      ....    .+ .+....++.||++++|+|+++
T Consensus        80 ~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~  111 (368)
T 2dby_A           80 VKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP  111 (368)
T ss_dssp             CCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred             cccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence            5432    12 123557899999999999985

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.23  E-value=1.4e-11  Score=127.07  Aligned_cols=120  Identities=15%  Similarity=0.170  Sum_probs=83.4

Q ss_pred             cCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECCC----------cccHHHHHHHHHHHHHhc--CCCCcEEEEE
Q 006490           55 YPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQ----------QSTLSRLSSYWLPELRRL--EIKVPIIVAG  122 (643)
Q Consensus        55 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~----------~~s~~~~~~~~~~~l~~~--~~~~pvilv~  122 (643)
                      ..+++.+.+|||+|++.+...+..++++++++|||||+++          ..++++... |+..+...  ..+.|+|||+
T Consensus       197 ~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~-~~~~i~~~~~~~~~piILv~  275 (362)
T 1zcb_A          197 EIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLN-IFETIVNNRVFSNVSIILFL  275 (362)
T ss_dssp             EETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHH-HHHHHHTCGGGTTSEEEEEE
T ss_pred             eeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHH-HHHHHhcchhhCCCCEEEEE
Confidence            3457899999999999999999999999999999999999          778888875 66666432  3589999999


Q ss_pred             ecccCCCCC---------------c-cchhhhhhhHHHHhh--------cccceEEEeCcccCCChhHHHHHHHHHHh
Q 006490          123 CKLDLRGDH---------------N-ATSLEEVMGPIMQQF--------REIETCVECSATTMIQVPDVFYYAQKAVL  176 (643)
Q Consensus       123 NK~D~~~~~---------------~-~~~~~~~~~~~~~~~--------~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~  176 (643)
                      ||+|+....               . + ..++....+..+|        .....+++|||+++.||.++|+++.+.+.
T Consensus       276 NK~DL~~~ki~~~~l~~~fp~y~g~~~-~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~  352 (362)
T 1zcb_A          276 NKTDLLEEKVQVVSIKDYFLEFEGDPH-CLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTIL  352 (362)
T ss_dssp             ECHHHHHHHTTTCCGGGTCTTCCSCTT-CHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred             EChhhhhhhccccchhhcCccccCCCC-CHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHH
Confidence            999985321               1 2 3333333222221        11235789999999999999999887754

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.22  E-value=2.3e-11  Score=139.46  Aligned_cols=117  Identities=15%  Similarity=0.084  Sum_probs=84.3

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCC----------------C--CCcccceEEEEEE------------cCCC
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENY----------------A--PTTGEQYAVNVVD------------QPGG  470 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~----------------~--~t~~~~~~~~~v~------------~~g~  470 (643)
                      ....+|+|+|.+|+|||||+++|++.......                .  .|+........+.            ..+.
T Consensus        17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~   96 (842)
T 1n0u_A           17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN   96 (842)
T ss_dssp             GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence            34679999999999999999999975221111                0  1222222222222            2334


Q ss_pred             cEEEEEEecCCchhhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCC
Q 006490          471 NKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLK  546 (643)
Q Consensus       471 ~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~  546 (643)
                      ...+.+|||+|+..+...  +..+++.+|++|+|+|++++.+++....|.... ..      ++|+++|+||+|+.
T Consensus        97 ~~~i~liDTPG~~df~~~--~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~-~~------~~p~ilviNK~D~~  163 (842)
T 1n0u_A           97 SFLINLIDSPGHVDFSSE--VTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-GE------RIKPVVVINKVDRA  163 (842)
T ss_dssp             EEEEEEECCCCCCSSCHH--HHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-HT------TCEEEEEEECHHHH
T ss_pred             CceEEEEECcCchhhHHH--HHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-Hc------CCCeEEEEECCCcc
Confidence            667889999999888766  788899999999999999998877765554333 32      79999999999986

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.22  E-value=9.4e-12  Score=128.31  Aligned_cols=153  Identities=18%  Similarity=0.152  Sum_probs=89.9

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhc------CCCCCCC-CCC-cc------------------cceEEEEEEc----C--
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLE------RPFSENY-APT-TG------------------EQYAVNVVDQ----P--  468 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~------~~~~~~~-~~t-~~------------------~~~~~~~v~~----~--  468 (643)
                      .....|+++|++|+|||||+|+|.+      .+..... ++. +.                  ....+.....    .  
T Consensus        54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g~  133 (341)
T 2p67_A           54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGA  133 (341)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CH
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccchh
Confidence            4567899999999999999999973      2211111 111 10                  0011111000    0  


Q ss_pred             ------------CCcEEEEEEecCCchhhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcE
Q 006490          469 ------------GGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPC  536 (643)
Q Consensus       469 ------------g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pv  536 (643)
                                  .....+.++||+|......     .....+|++++|+|++.+..++.+..   ..  .      +.|.
T Consensus       134 ~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~-----~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~--~------~~p~  197 (341)
T 2p67_A          134 SQRARELMLLCEAAGYDVVIVETVGVGQSET-----EVARMVDCFISLQIAGGGDDLQGIKK---GL--M------EVAD  197 (341)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEEEEECCTTHHH-----HHHTTCSEEEEEECC------CCCCH---HH--H------HHCS
T ss_pred             HHHHHHHHHHhhccCCCEEEEeCCCccchHH-----HHHHhCCEEEEEEeCCccHHHHHHHH---hh--h------cccC
Confidence                        0134678899999644322     24589999999999986543221111   11  1      4688


Q ss_pred             EEEEeCCCCCCccccHHHHHHHHH---HhC------CCCcEEeeeccC-CHHHHHHHHHHHHh
Q 006490          537 LLIASKDDLKPYTMAVQDSARVTQ---ELG------IEPPIPVSMKSK-DLNNVFSRIIWAAE  589 (643)
Q Consensus       537 ilv~NK~Dl~~~~~~~~~~~~~~~---~~~------~~~~~~vSa~~g-~i~~l~~~l~~~~~  589 (643)
                      ++|+||+|+..........+++..   .++      .++++++||++| |++++++.|.+.+.
T Consensus       198 ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          198 LIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             EEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            999999999764222222223322   333      345789999999 99999999998664

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.20  E-value=1.4e-10  Score=115.11  Aligned_cols=111  Identities=13%  Similarity=0.026  Sum_probs=68.6

Q ss_pred             EEEEEEecCCchhhhhhhc----cHHhhccCCEEEEEEeCCChhhHHHHHH---HH-HHHHHhcCCCCCCCcEEEEEeCC
Q 006490          472 KKTLILQEIPEEGVKKILS----NKEALASCDVTIFVYDSSDEYSWKRTKE---LL-VEVARLGEDSGYGVPCLLIASKD  543 (643)
Q Consensus       472 ~~~~i~d~~g~~~~~~~~~----~~~~~~~ad~illv~D~s~~~s~~~~~~---~~-~~i~~~~~~~~~~~pvilv~NK~  543 (643)
                      ..+.++||+|.........    ....+.. +++++++|++...+......   +. ......      +.|+++|+||+
T Consensus       109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~------~~p~~iv~NK~  181 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRL------GATTIPALNKV  181 (262)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHH------TSCEEEEECCG
T ss_pred             CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhccc------CCCeEEEEecc
Confidence            3678999999866543210    1134566 89999999864322222221   11 111222      78999999999


Q ss_pred             CCCCcccc---HH---HHH----H-----------------HHHHhCCC-CcEEeeeccC-CHHHHHHHHHHHHh
Q 006490          544 DLKPYTMA---VQ---DSA----R-----------------VTQELGIE-PPIPVSMKSK-DLNNVFSRIIWAAE  589 (643)
Q Consensus       544 Dl~~~~~~---~~---~~~----~-----------------~~~~~~~~-~~~~vSa~~g-~i~~l~~~l~~~~~  589 (643)
                      |+......   .+   ...    .                 +.+.++.. +++++||++| |+++++++|.+.+.
T Consensus       182 D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~  256 (262)
T 1yrb_A          182 DLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC  256 (262)
T ss_dssp             GGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             cccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence            99764321   11   111    1                 12344432 6899999999 99999999988764

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.20  E-value=3.3e-11  Score=124.36  Aligned_cols=121  Identities=13%  Similarity=0.072  Sum_probs=86.4

Q ss_pred             EEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEEEEeCCC----------hhhHHHHHHHHHHHHHhcCCCC
Q 006490          462 VNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSD----------EYSWKRTKELLVEVARLGEDSG  531 (643)
Q Consensus       462 ~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv~D~s~----------~~s~~~~~~~~~~i~~~~~~~~  531 (643)
                      ...+...  ...+.+||++|++.+...  +..++++++++|+|+|+++          ..+++....|+..+....... 
T Consensus       193 ~~~~~~~--~~~l~i~Dt~Gq~~~r~~--w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~-  267 (362)
T 1zcb_A          193 EYDFEIK--NVPFKMVDVGGQRSERKR--WFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFS-  267 (362)
T ss_dssp             EEEEEET--TEEEEEEEECC---------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGT-
T ss_pred             EEEeeeC--CeEEEEEeccchhhhhhh--HHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhC-
Confidence            3344443  477889999999988887  8889999999999999999          778999999988887643222 


Q ss_pred             CCCcEEEEEeCCCCCCcc-----------------ccHHHHHHHHH-----------HhCCCCcEEeeeccC-CHHHHHH
Q 006490          532 YGVPCLLIASKDDLKPYT-----------------MAVQDSARVTQ-----------ELGIEPPIPVSMKSK-DLNNVFS  582 (643)
Q Consensus       532 ~~~pvilv~NK~Dl~~~~-----------------~~~~~~~~~~~-----------~~~~~~~~~vSa~~g-~i~~l~~  582 (643)
                       +.|+|+++||+|+..++                 ...+.+..++.           ..++ .+++|||+++ |++++|+
T Consensus       268 -~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~-~~~~tSA~d~~nV~~vF~  345 (362)
T 1zcb_A          268 -NVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPL-YHHFTTAINTENIRLVFR  345 (362)
T ss_dssp             -TSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CC-EEEECCTTCHHHHHHHHH
T ss_pred             -CCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCce-EEEEEecCCchhHHHHHH
Confidence             79999999999986422                 22344444441           1233 3789999999 9999999


Q ss_pred             HHHHHHh
Q 006490          583 RIIWAAE  589 (643)
Q Consensus       583 ~l~~~~~  589 (643)
                      ++.+.+.
T Consensus       346 ~v~~~i~  352 (362)
T 1zcb_A          346 DVKDTIL  352 (362)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998764

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.20  E-value=2.3e-11  Score=126.43  Aligned_cols=120  Identities=13%  Similarity=0.109  Sum_probs=89.3

Q ss_pred             CCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECCC----------cccHHHHHHHHHHHHHhc--CCCCcEEEEEe
Q 006490           56 PDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQ----------QSTLSRLSSYWLPELRRL--EIKVPIIVAGC  123 (643)
Q Consensus        56 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~----------~~s~~~~~~~~~~~l~~~--~~~~pvilv~N  123 (643)
                      .+++.+.||||+|++.+...+..++++++++|||||+++          ..++++... |+..+...  ..+.|+|||+|
T Consensus       214 ~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~-~~~~i~~~~~~~~~piiLvgN  292 (402)
T 1azs_C          214 VDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALN-LFKSIWNNRWLRTISVILFLN  292 (402)
T ss_dssp             ETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHH-HHHHHHTCTTCSSCCEEEEEE
T ss_pred             cCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHH-HHHHHHhcccCCCCeEEEEEE
Confidence            456899999999999999999999999999999999999          889999874 77777653  36899999999


Q ss_pred             cccCCCCCc---cch-------------------------hhhhhhHH-HHhhc----------ccceEEEeCcccCCCh
Q 006490          124 KLDLRGDHN---ATS-------------------------LEEVMGPI-MQQFR----------EIETCVECSATTMIQV  164 (643)
Q Consensus       124 K~D~~~~~~---~~~-------------------------~~~~~~~~-~~~~~----------~~~~~~~~Sa~~~~gi  164 (643)
                      |+|+...+.   +..                         ..+....+ ..+|.          ....+++|||+++.||
T Consensus       293 K~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV  372 (402)
T 1azs_C          293 KQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENI  372 (402)
T ss_dssp             CHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHH
T ss_pred             ChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCH
Confidence            999743211   000                         01222222 12111          1124679999999999


Q ss_pred             hHHHHHHHHHHh
Q 006490          165 PDVFYYAQKAVL  176 (643)
Q Consensus       165 ~~l~~~i~~~~~  176 (643)
                      +++|..+.+.+.
T Consensus       373 ~~vF~~v~~~I~  384 (402)
T 1azs_C          373 RRVFNDCRDIIQ  384 (402)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999877654

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.18  E-value=6.2e-11  Score=133.96  Aligned_cols=113  Identities=16%  Similarity=0.172  Sum_probs=79.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC-----C--CCC---CC---CCCC---Ce----eeCCcc-----cCCceeEEEEeCCC
Q 006490           14 RVVVVGDRGTGKSSLIAAAATES-----V--PEK---VP---PVHA---PT----RLPPDF-----YPDRVPVTIIDTSS   68 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~~~-----~--~~~---~~---~~~~---~~----~~~~~~-----~~~~~~~~i~Dt~G   68 (643)
                      +|+|+|+.++|||||..+|+...     .  +..   +.   ....   .+    .+...+     ..+++.++|+||||
T Consensus        15 Ni~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTPG   94 (709)
T 4fn5_A           15 NIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTPG   94 (709)
T ss_dssp             EEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCCS
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCCC
Confidence            59999999999999999997322     0  000   00   0000   00    011111     12468999999999


Q ss_pred             CCcchhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCC
Q 006490           69 SLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD  130 (643)
Q Consensus        69 ~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~  130 (643)
                      +.+|......+++-+|++|+|+|+...-..+..  ..++...+.  ++|.++++||+|....
T Consensus        95 HvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~--~v~~~a~~~--~lp~i~~iNKiDr~~a  152 (709)
T 4fn5_A           95 HVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSE--TVWRQANKY--GVPRIVYVNKMDRQGA  152 (709)
T ss_dssp             CTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHH--HHHHHHHHH--TCCEEEEEECSSSTTC
T ss_pred             CcccHHHHHHHHHHhCeEEEEEECCCCCchhHH--HHHHHHHHc--CCCeEEEEccccccCc
Confidence            999999999999999999999998776555544  355566665  8999999999998653

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.17  E-value=5.7e-11  Score=123.44  Aligned_cols=120  Identities=12%  Similarity=0.054  Sum_probs=92.0

Q ss_pred             EEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEEEEeCCC----------hhhHHHHHHHHHHHHHhcCCCCC
Q 006490          463 NVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSD----------EYSWKRTKELLVEVARLGEDSGY  532 (643)
Q Consensus       463 ~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv~D~s~----------~~s~~~~~~~~~~i~~~~~~~~~  532 (643)
                      ..+...  ...+.+||++|++.+.++  +..++++++++|+|||+++          ..+|+....|+..+.......  
T Consensus       210 ~~~~~~--~v~l~iwDtaGQe~~r~~--w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~--  283 (402)
T 1azs_C          210 TKFQVD--KVNFHMFDVGGQRDERRK--WIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLR--  283 (402)
T ss_dssp             EEEEET--TEEEEEEEECCSGGGGGG--GGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCS--
T ss_pred             EEeecC--Cccceecccchhhhhhhh--hHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCC--
Confidence            334444  377889999999999888  8999999999999999999          889999999999887653222  


Q ss_pred             CCcEEEEEeCCCCCCccc---c----------------------------HHHHHHHH-----HHh--------CCCCcE
Q 006490          533 GVPCLLIASKDDLKPYTM---A----------------------------VQDSARVT-----QEL--------GIEPPI  568 (643)
Q Consensus       533 ~~pvilv~NK~Dl~~~~~---~----------------------------~~~~~~~~-----~~~--------~~~~~~  568 (643)
                      +.|++||+||+|+...+.   .                            .+.+..++     +..        ++ .++
T Consensus       284 ~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~-~~~  362 (402)
T 1azs_C          284 TISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYC-YPH  362 (402)
T ss_dssp             SCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCE-EEE
T ss_pred             CCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCccc-EEE
Confidence            799999999999854322   1                            13344442     221        22 367


Q ss_pred             EeeeccC-CHHHHHHHHHHHHh
Q 006490          569 PVSMKSK-DLNNVFSRIIWAAE  589 (643)
Q Consensus       569 ~vSa~~g-~i~~l~~~l~~~~~  589 (643)
                      +|||+++ ||+++|..+.+.+.
T Consensus       363 ~TSA~d~~nV~~vF~~v~~~I~  384 (402)
T 1azs_C          363 FTCAVDTENIRRVFNDCRDIIQ  384 (402)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHH
T ss_pred             EEEeecCcCHHHHHHHHHHHHH
Confidence            9999999 99999999888764

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.17  E-value=2.8e-11  Score=117.32  Aligned_cols=153  Identities=16%  Similarity=0.100  Sum_probs=86.1

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCC----C------------Cee--e--CCccc--------------C
Q 006490           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVH----A------------PTR--L--PPDFY--------------P   56 (643)
Q Consensus        11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~----~------------~~~--~--~~~~~--------------~   56 (643)
                      +..+|+|+|++|||||||+++|+...+.....++.    .            ...  .  ...+.              .
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~  116 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL  116 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence            45799999999999999999999764322111100    0            000  0  00000              1


Q ss_pred             CceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchh
Q 006490           57 DRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSL  136 (643)
Q Consensus        57 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~  136 (643)
                      .+..+.++|++|.....   ..+-...+.++.|+|.........   .....   .  +.|.++|+||+|+...... ..
T Consensus       117 ~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~---~~~~~---~--~~~~iiv~NK~Dl~~~~~~-~~  184 (226)
T 2hf9_A          117 DEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIE---KHPGI---M--KTADLIVINKIDLADAVGA-DI  184 (226)
T ss_dssp             GGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTT---TCHHH---H--TTCSEEEEECGGGHHHHTC-CH
T ss_pred             CCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHh---hhhhH---h--hcCCEEEEeccccCchhHH-HH
Confidence            12357777777742111   111123456677777532211110   01111   2  5789999999998643211 12


Q ss_pred             hhhhhHHHHhhcccceEEEeCcccCCChhHHHHHHHHHHh
Q 006490          137 EEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVL  176 (643)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~  176 (643)
                       +....+...++...+++++||++|.|++++|+.+.+.+.
T Consensus       185 -~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~  223 (226)
T 2hf9_A          185 -KKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVK  223 (226)
T ss_dssp             -HHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHH
Confidence             223344444433347999999999999999999887653

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.13  E-value=5.8e-10  Score=121.64  Aligned_cols=114  Identities=13%  Similarity=0.117  Sum_probs=79.2

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCC-----------------CCCCC-----CcccceEEEEEEcCCCcEEEEEEecC
Q 006490          423 VFRCLLFGPQNAGKSALLNSFLERPFS-----------------ENYAP-----TTGEQYAVNVVDQPGGNKKTLILQEI  480 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~~~~~~-----------------~~~~~-----t~~~~~~~~~v~~~g~~~~~~i~d~~  480 (643)
                      .-+|+|+|..++|||||..+|+...-.                 ..+.+     .++.......+.+  ...++.++||+
T Consensus        31 ~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~--~~~~iNlIDTP  108 (548)
T 3vqt_A           31 RRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPY--RDRVVNLLDTP  108 (548)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEE--TTEEEEEECCC
T ss_pred             cceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEE--CCEEEEEEeCC
Confidence            347999999999999999999732110                 01111     1111122333444  34678889999


Q ss_pred             CchhhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC
Q 006490          481 PEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP  547 (643)
Q Consensus       481 g~~~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~  547 (643)
                      |+..|..-  ..++++-+|++|+|+|+.++..-+....| ....++      ++|.++++||+|...
T Consensus       109 GHvDF~~E--v~raL~~~DgAvlVvda~~GV~~qT~~v~-~~a~~~------~lp~i~fINK~Dr~~  166 (548)
T 3vqt_A          109 GHQDFSED--TYRVLTAVDSALVVIDAAKGVEAQTRKLM-DVCRMR------ATPVMTFVNKMDREA  166 (548)
T ss_dssp             CGGGCSHH--HHHHHHSCSEEEEEEETTTBSCHHHHHHH-HHHHHT------TCCEEEEEECTTSCC
T ss_pred             CcHHHHHH--HHHHHHhcCceEEEeecCCCcccccHHHH-HHHHHh------CCceEEEEecccchh
Confidence            99887654  67889999999999999998764544444 444554      899999999999865

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.08  E-value=1.8e-10  Score=118.30  Aligned_cols=153  Identities=14%  Similarity=0.100  Sum_probs=89.5

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhc------CCC--CCCCCCCCC-------Ce-eeCC---------------------
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAAT------ESV--PEKVPPVHA-------PT-RLPP---------------------   52 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~------~~~--~~~~~~~~~-------~~-~~~~---------------------   52 (643)
                      .+...|+|+|++|||||||+|.+++      ...  ....+....       .. ++..                     
T Consensus        53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~  132 (337)
T 2qm8_A           53 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGV  132 (337)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccch
Confidence            4556899999999999999999983      321  111111000       00 0000                     


Q ss_pred             ---------cccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEe
Q 006490           53 ---------DFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGC  123 (643)
Q Consensus        53 ---------~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~N  123 (643)
                               .+...+..+.|+||+|+.....   .....+|++++|+|+......+.+.    ..+.    ..|.++|+|
T Consensus       133 tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~i~----~~i~----~~~~ivvlN  201 (337)
T 2qm8_A          133 AAKTRETMLLCEAAGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIK----KGIF----ELADMIAVN  201 (337)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CC----TTHH----HHCSEEEEE
T ss_pred             HHHHHHHHHHHhcCCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHHHH----HHHh----ccccEEEEE
Confidence                     0122577899999999865322   3457899999999976443221111    1111    246678889


Q ss_pred             cccCCCCCccchhhhhhhHHHHhh---c-----ccceEEEeCcccCCChhHHHHHHHHHH
Q 006490          124 KLDLRGDHNATSLEEVMGPIMQQF---R-----EIETCVECSATTMIQVPDVFYYAQKAV  175 (643)
Q Consensus       124 K~D~~~~~~~~~~~~~~~~~~~~~---~-----~~~~~~~~Sa~~~~gi~~l~~~i~~~~  175 (643)
                      |+|+......  .....+.+...+   .     ...+++.+||+++.|++++++.+.+..
T Consensus       202 K~Dl~~~~~~--s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~  259 (337)
T 2qm8_A          202 KADDGDGERR--ASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHR  259 (337)
T ss_dssp             CCSTTCCHHH--HHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             chhccCchhH--HHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence            9997542211  111122222211   1     023688999999999999999888754

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.05  E-value=6.1e-10  Score=114.23  Aligned_cols=153  Identities=13%  Similarity=0.128  Sum_probs=88.7

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhc------CCCCCCCC-CC-ccc----------------ceEEEEEEcC--------
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLE------RPFSENYA-PT-TGE----------------QYAVNVVDQP--------  468 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~------~~~~~~~~-~t-~~~----------------~~~~~~v~~~--------  468 (643)
                      .....++|+|++|||||||+|.+.+      ++...... ++ +..                +.......++        
T Consensus        53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~  132 (337)
T 2qm8_A           53 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGV  132 (337)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccch
Confidence            4456899999999999999999983      33221111 11 000                0001111111        


Q ss_pred             ------------CCcEEEEEEecCCchhhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcE
Q 006490          469 ------------GGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPC  536 (643)
Q Consensus       469 ------------g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pv  536 (643)
                                  .....+.++||+|...-.     ......+|++++|+|++.+...+.+...   +.        ..|.
T Consensus       133 tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~-----~~v~~~~d~vl~v~d~~~~~~~~~i~~~---i~--------~~~~  196 (337)
T 2qm8_A          133 AAKTRETMLLCEAAGFDVILVETVGVGQSE-----TAVADLTDFFLVLMLPGAGDELQGIKKG---IF--------ELAD  196 (337)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEEECSSSSCH-----HHHHTTSSEEEEEECSCC------CCTT---HH--------HHCS
T ss_pred             HHHHHHHHHHHhcCCCCEEEEECCCCCcch-----hhHHhhCCEEEEEEcCCCcccHHHHHHH---Hh--------cccc
Confidence                        023467789999964321     2234789999999998755322111111   11        2456


Q ss_pred             EEEEeCCCCCCccc-cHHHHHHHHHHh---C------CCCcEEeeeccC-CHHHHHHHHHHHHh
Q 006490          537 LLIASKDDLKPYTM-AVQDSARVTQEL---G------IEPPIPVSMKSK-DLNNVFSRIIWAAE  589 (643)
Q Consensus       537 ilv~NK~Dl~~~~~-~~~~~~~~~~~~---~------~~~~~~vSa~~g-~i~~l~~~l~~~~~  589 (643)
                      ++|+||+|+..... .....+.+....   .      .++++.+||+++ |++++++.|.+...
T Consensus       197 ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          197 MIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             EEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             EEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            77889999754221 122233333322   2      346899999999 99999999988764

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=99.03  E-value=2.5e-10  Score=112.64  Aligned_cols=88  Identities=10%  Similarity=0.025  Sum_probs=54.9

Q ss_pred             CCCCc-chhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHH
Q 006490           67 SSSLE-NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQ  145 (643)
Q Consensus        67 ~G~~~-~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~  145 (643)
                      ||+.. ........+..+|+++.|+|+.++.+.....  +. .    . ++|.++|.||+|+.....   . +....+..
T Consensus         5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-l----l-~k~~iivlNK~DL~~~~~---~-~~~~~~~~   72 (262)
T 3cnl_A            5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD-F----S-RKETIILLNKVDIADEKT---T-KKWVEFFK   72 (262)
T ss_dssp             ----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-C----T-TSEEEEEEECGGGSCHHH---H-HHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-h----c-CCCcEEEEECccCCCHHH---H-HHHHHHHH
Confidence            55432 3345668899999999999999886654321  11 1    1 799999999999975211   1 11112222


Q ss_pred             hhcccceEEEeCcccCCChhHHHH
Q 006490          146 QFREIETCVECSATTMIQVPDVFY  169 (643)
Q Consensus       146 ~~~~~~~~~~~Sa~~~~gi~~l~~  169 (643)
                      +.+  .++ .+||+++.|++++++
T Consensus        73 ~~g--~~v-~iSa~~~~gi~~L~~   93 (262)
T 3cnl_A           73 KQG--KRV-ITTHKGEPRKVLLKK   93 (262)
T ss_dssp             HTT--CCE-EECCTTSCHHHHHHH
T ss_pred             HcC--CeE-EEECCCCcCHHHHHH
Confidence            222  246 999999999887664

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=98.98  E-value=2.4e-10  Score=127.27  Aligned_cols=112  Identities=18%  Similarity=0.197  Sum_probs=76.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC--CCC---CCCCC-Ccc------------cceEEEEEEcCCCcEEEEEEecCCchhhh
Q 006490          425 RCLLFGPQNAGKSALLNSFLER--PFS---ENYAP-TTG------------EQYAVNVVDQPGGNKKTLILQEIPEEGVK  486 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~--~~~---~~~~~-t~~------------~~~~~~~v~~~g~~~~~~i~d~~g~~~~~  486 (643)
                      +|+|+|...+|||||..+|+..  ...   .+... +..            .......+.+  ...++.++||+|+..|.
T Consensus         4 Ni~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~--~~~~iNlIDTPGH~DF~   81 (638)
T 3j25_A            4 NIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQW--ENTKVNIIDTPGHMDFL   81 (638)
T ss_dssp             CCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBC--SSCBCCCEECCCSSSTH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEE--CCEEEEEEECCCcHHHH
Confidence            5899999999999999999732  111   11111 111            1111222333  34566789999998876


Q ss_pred             hhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC
Q 006490          487 KILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP  547 (643)
Q Consensus       487 ~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~  547 (643)
                      .-  ....++-+|++|+|+|+.++..-+. ...+..+.++      ++|.++++||+|...
T Consensus        82 ~E--v~raL~~~DgavlVVDa~~GV~~qT-~~v~~~a~~~------~lp~i~~INKmDr~~  133 (638)
T 3j25_A           82 AE--VYRSLSVLDGAILLISAKDGVQAQT-RILFHALRKM------GIPTIFFINKIDQNG  133 (638)
T ss_dssp             HH--HHHHHTTCSEEECCEESSCTTCSHH-HHHHHHHHHH------TCSCEECCEECCSSS
T ss_pred             HH--HHHHHHHhCEEEEEEeCCCCCcHHH-HHHHHHHHHc------CCCeEEEEecccccc
Confidence            64  6788999999999999998865343 3444444555      899999999999864

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=98.94  E-value=5.5e-10  Score=115.51  Aligned_cols=93  Identities=13%  Similarity=0.093  Sum_probs=52.6

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCC---------------cEEEEEEecCCchhh
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGG---------------NKKTLILQEIPEEGV  485 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~---------------~~~~~i~d~~g~~~~  485 (643)
                      ...++|+|+|.||||||||+|+|++..+.....|+++.....-.+.+++.               ...+.+||++|....
T Consensus        20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~   99 (396)
T 2ohf_A           20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG   99 (396)
T ss_dssp             SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence            45689999999999999999999998764333354443344445555532               124778999997653


Q ss_pred             hh----h-hccHHhhccCCEEEEEEeCCChhhH
Q 006490          486 KK----I-LSNKEALASCDVTIFVYDSSDEYSW  513 (643)
Q Consensus       486 ~~----~-~~~~~~~~~ad~illv~D~s~~~s~  513 (643)
                      .+    + .....+++.+|++++|+|+++..++
T Consensus       100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i  132 (396)
T 2ohf_A          100 AHNGQGLGNAFLSHISACDGIFHLTRAFEDDDI  132 (396)
T ss_dssp             -------CCHHHHHHHTSSSEEEEEEC------
T ss_pred             cchhhHHHHHHHHHHHhcCeEEEEEecCCCcch
Confidence            32    1 1246788999999999999865443

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=98.88  E-value=2.5e-09  Score=108.09  Aligned_cols=95  Identities=17%  Similarity=0.153  Sum_probs=74.8

Q ss_pred             chhhhhhhccHHhhccCCEEEEEEeCCChh-hHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc--HHHHHHH
Q 006490          482 EEGVKKILSNKEALASCDVTIFVYDSSDEY-SWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA--VQDSARV  558 (643)
Q Consensus       482 ~~~~~~~~~~~~~~~~ad~illv~D~s~~~-s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~--~~~~~~~  558 (643)
                      ++++..+  ...++.++|++++|+|++++. ++..+.+|+..+...      ++|+++|+||+|+.++...  .+...++
T Consensus        66 ~er~~~l--~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~------~~~~ilV~NK~DL~~~~~v~~~~~~~~~  137 (302)
T 2yv5_A           66 EERKNLL--IRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYF------KVEPVIVFNKIDLLNEEEKKELERWISI  137 (302)
T ss_dssp             CCCSCEE--ETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHT------TCEEEEEECCGGGCCHHHHHHHHHHHHH
T ss_pred             CChHHHH--hHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhC------CCCEEEEEEcccCCCccccHHHHHHHHH
Confidence            4455555  456899999999999999985 888888998877653      8999999999999875421  2344556


Q ss_pred             HHHhCCCCcEEeeeccC-CHHHHHHHHH
Q 006490          559 TQELGIEPPIPVSMKSK-DLNNVFSRII  585 (643)
Q Consensus       559 ~~~~~~~~~~~vSa~~g-~i~~l~~~l~  585 (643)
                      .+..+++ ++++||++| |++++++.+.
T Consensus       138 ~~~~g~~-~~~~SA~~g~gi~~L~~~l~  164 (302)
T 2yv5_A          138 YRDAGYD-VLKVSAKTGEGIDELVDYLE  164 (302)
T ss_dssp             HHHTTCE-EEECCTTTCTTHHHHHHHTT
T ss_pred             HHHCCCe-EEEEECCCCCCHHHHHhhcc
Confidence            6677875 999999999 9999987754

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=98.87  E-value=1.8e-08  Score=104.47  Aligned_cols=89  Identities=13%  Similarity=0.079  Sum_probs=58.9

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCC-CCCcccceEEEEEEcCCCc---------------EEEEEEecCCchh
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENY-APTTGEQYAVNVVDQPGGN---------------KKTLILQEIPEEG  484 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~-~~t~~~~~~~~~v~~~g~~---------------~~~~i~d~~g~~~  484 (643)
                      ....+|+|+|+||||||||+|+|++.....+. .|.++.....-.+.++|.+               ..+.++|++|...
T Consensus        18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~   97 (392)
T 1ni3_A           18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK   97 (392)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence            45679999999999999999999998763333 3533332333334445311               3467899998432


Q ss_pred             hh----hh-hccHHhhccCCEEEEEEeCCC
Q 006490          485 VK----KI-LSNKEALASCDVTIFVYDSSD  509 (643)
Q Consensus       485 ~~----~~-~~~~~~~~~ad~illv~D~s~  509 (643)
                      ..    .+ ......++.+|++++|+|+.+
T Consensus        98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A           98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            11    01 124567789999999999874

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=98.84  E-value=5.1e-08  Score=110.13  Aligned_cols=117  Identities=15%  Similarity=0.066  Sum_probs=77.8

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCC-----CCCCCC-Cc------------ccceEEEEEEcCC-----CcEEEEEEe
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPF-----SENYAP-TT------------GEQYAVNVVDQPG-----GNKKTLILQ  478 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~-----~~~~~~-t~------------~~~~~~~~v~~~g-----~~~~~~i~d  478 (643)
                      +.-+|+|+|...+|||||..+|+...-     ..+... +.            +.......+.+.+     +...+.++|
T Consensus        12 ~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlID   91 (709)
T 4fn5_A           12 RYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVID   91 (709)
T ss_dssp             GEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEEC
T ss_pred             HCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEe
Confidence            345799999999999999999973210     000000 11            1111122222322     246788999


Q ss_pred             cCCchhhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC
Q 006490          479 EIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP  547 (643)
Q Consensus       479 ~~g~~~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~  547 (643)
                      |+|+..|..-  ...+++-+|++|+|+|+..+..-+...-| ....+.      ++|.++++||+|...
T Consensus        92 TPGHvDF~~E--v~~aLr~~DgavlvVDaveGV~~qT~~v~-~~a~~~------~lp~i~~iNKiDr~~  151 (709)
T 4fn5_A           92 TPGHVDFTIE--VERSLRVLDGAVVVFCGTSGVEPQSETVW-RQANKY------GVPRIVYVNKMDRQG  151 (709)
T ss_dssp             CCSCTTCHHH--HHHHHHHCSEEEEEEETTTCSCHHHHHHH-HHHHHH------TCCEEEEEECSSSTT
T ss_pred             CCCCcccHHH--HHHHHHHhCeEEEEEECCCCCchhHHHHH-HHHHHc------CCCeEEEEccccccC
Confidence            9999887654  67889999999999999998764544444 444444      899999999999853

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=98.81  E-value=3.3e-09  Score=109.76  Aligned_cols=92  Identities=11%  Similarity=0.155  Sum_probs=49.4

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCCCCCee-eCCcccC---------------CceeEEEEeCCCCCc
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVP-EKVPPVHAPTR-LPPDFYP---------------DRVPVTIIDTSSSLE   71 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~-~~~~~~~~~~~-~~~~~~~---------------~~~~~~i~Dt~G~~~   71 (643)
                      ....++|+|+|.||||||||+|+|++..+. .++|.++.... ....+..               -...+.+|||||+..
T Consensus        19 i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~   98 (396)
T 2ohf_A           19 FGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVK   98 (396)
T ss_dssp             SSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC---
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccc
Confidence            355689999999999999999999988642 22333221111 1011111               023599999999876


Q ss_pred             chh-------hhHHhhccCCEEEEEEECCCcccHHH
Q 006490           72 NKG-------KLNEELKRADAVVLTYACNQQSTLSR  100 (643)
Q Consensus        72 ~~~-------~~~~~~~~ad~il~v~d~~~~~s~~~  100 (643)
                      +..       ....+++++|++++|+|+.+..++.+
T Consensus        99 ~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i~~  134 (396)
T 2ohf_A           99 GAHNGQGLGNAFLSHISACDGIFHLTRAFEDDDITH  134 (396)
T ss_dssp             --------CCHHHHHHHTSSSEEEEEEC--------
T ss_pred             ccchhhHHHHHHHHHHHhcCeEEEEEecCCCcchhh
Confidence            443       34577899999999999876555443

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.77  E-value=5e-09  Score=105.13  Aligned_cols=89  Identities=18%  Similarity=0.227  Sum_probs=57.4

Q ss_pred             hhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcc-cceE
Q 006490           75 KLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE-IETC  153 (643)
Q Consensus        75 ~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~  153 (643)
                      +....+..+|.+++|+|+..+........+++......  ++|.++|.||+|+.....   ..+..+.+.+.|.. -.++
T Consensus        79 l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~--~~~~vivlnK~DL~~~~~---~~~~~~~~~~~y~~~g~~v  153 (307)
T 1t9h_A           79 LIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEAN--DIQPIICITKMDLIEDQD---TEDTIQAYAEDYRNIGYDV  153 (307)
T ss_dssp             ETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTT--TCEEEEEEECGGGCCCHH---HHHHHHHHHHHHHHHTCCE
T ss_pred             hhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHC--CCCEEEEEECCccCchhh---hHHHHHHHHHHHHhCCCeE
Confidence            34457889999999999987654444333455444444  899999999999976421   00112333333321 1368


Q ss_pred             EEeCcccCCChhHHH
Q 006490          154 VECSATTMIQVPDVF  168 (643)
Q Consensus       154 ~~~Sa~~~~gi~~l~  168 (643)
                      +.+||.++.|+++|+
T Consensus       154 ~~~sa~~~~g~~~L~  168 (307)
T 1t9h_A          154 YLTSSKDQDSLADII  168 (307)
T ss_dssp             EECCHHHHTTCTTTG
T ss_pred             EEEecCCCCCHHHHH
Confidence            999999888876543

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=98.75  E-value=6.8e-08  Score=100.19  Aligned_cols=86  Identities=14%  Similarity=0.188  Sum_probs=57.3

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCC--CCCCCCCCCCee-eCCcccC------------C---ceeEEEEeCCCCC
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATESV--PEKVPPVHAPTR-LPPDFYP------------D---RVPVTIIDTSSSL   70 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~--~~~~~~~~~~~~-~~~~~~~------------~---~~~~~i~Dt~G~~   70 (643)
                      ..+..+|+|+|+||||||||+|+|++...  +.++|.++.... -...+..            .   +..+.+|||||+.
T Consensus        17 v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~   96 (392)
T 1ni3_A           17 PGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLT   96 (392)
T ss_dssp             SSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGC
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccc
Confidence            45568999999999999999999999764  333444222111 1111111            0   1358999999965


Q ss_pred             cc-------hhhhHHhhccCCEEEEEEECCC
Q 006490           71 EN-------KGKLNEELKRADAVVLTYACNQ   94 (643)
Q Consensus        71 ~~-------~~~~~~~~~~ad~il~v~d~~~   94 (643)
                      ..       .......++.+|++++|+|+.+
T Consensus        97 ~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A           97 KGASTGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             CCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            32       2234466789999999999864

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=98.63  E-value=3.4e-08  Score=91.40  Aligned_cols=102  Identities=13%  Similarity=0.111  Sum_probs=65.6

Q ss_pred             CchhhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCC--CCCCcEEEEEeCC-CCCCccccHHHHHH
Q 006490          481 PEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDS--GYGVPCLLIASKD-DLKPYTMAVQDSAR  557 (643)
Q Consensus       481 g~~~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~--~~~~pvilv~NK~-Dl~~~~~~~~~~~~  557 (643)
                      |++.+..+  |..|+.++|++|||+|++|...++ .+..+.++.......  ..+.|++|.+||. |+... .   ...+
T Consensus       111 GQ~klRpl--Wr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~A-m---s~~E  183 (227)
T 3l82_B          111 SRYSVIPQ--IQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR-M---PCFY  183 (227)
T ss_dssp             ------CC--HHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCB-C---CHHH
T ss_pred             cHHHHHHH--HHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCC-C---CHHH
Confidence            67777777  899999999999999999875433 333333332221111  1289999999995 67542 1   2334


Q ss_pred             HHHHhCCC------CcEEeeeccC-CHHHHHHHHHHHHh
Q 006490          558 VTQELGIE------PPIPVSMKSK-DLNNVFSRIIWAAE  589 (643)
Q Consensus       558 ~~~~~~~~------~~~~vSa~~g-~i~~l~~~l~~~~~  589 (643)
                      +.+.+++.      .+..|||++| |+.+-++||.+.+.
T Consensus       184 I~e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~  222 (227)
T 3l82_B          184 LAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE  222 (227)
T ss_dssp             HHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred             HHHHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHH
Confidence            44444432      3789999999 99999999988765

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=98.63  E-value=2e-07  Score=95.34  Aligned_cols=83  Identities=18%  Similarity=0.173  Sum_probs=52.6

Q ss_pred             hhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhccc-ceEEEeC
Q 006490           79 ELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREI-ETCVECS  157 (643)
Q Consensus        79 ~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~S  157 (643)
                      .+.++|.+++|... .+........+++-.....  ++|.+||.||+|+.....    .+..+.+...|... .+++.+|
T Consensus       127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~~--~~~~iivlNK~DL~~~~~----~~~~~~~~~~y~~~G~~v~~~S  199 (358)
T 2rcn_A          127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCETL--QVEPLIVLNKIDLLDDEG----MDFVNEQMDIYRNIGYRVLMVS  199 (358)
T ss_dssp             EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHHH--TCEEEEEEECGGGCCHHH----HHHHHHHHHHHHTTTCCEEECB
T ss_pred             HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHhc--CCCEEEEEECccCCCchh----HHHHHHHHHHHHhCCCcEEEEe
Confidence            46789999988765 4543333333455444445  789999999999975311    11133343433221 3689999


Q ss_pred             cccCCChhHHH
Q 006490          158 ATTMIQVPDVF  168 (643)
Q Consensus       158 a~~~~gi~~l~  168 (643)
                      |.++.|++++.
T Consensus       200 a~~~~gl~~L~  210 (358)
T 2rcn_A          200 SHTQDGLKPLE  210 (358)
T ss_dssp             TTTTBTHHHHH
T ss_pred             cCCCcCHHHHH
Confidence            99999987654

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=98.61  E-value=3.8e-08  Score=105.41  Aligned_cols=152  Identities=12%  Similarity=0.028  Sum_probs=88.2

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHh------cCCCCCCCCCCcc-------------cceEEEEEEcC--------------
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFL------ERPFSENYAPTTG-------------EQYAVNVVDQP--------------  468 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~------~~~~~~~~~~t~~-------------~~~~~~~v~~~--------------  468 (643)
                      .+..|+|+|.+||||||++++|.      |.+...+...+.+             ....+....+.              
T Consensus       100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~  179 (504)
T 2j37_W          100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF  179 (504)
T ss_dssp             --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence            45689999999999999999999      5543322211100             01111111010              


Q ss_pred             -CCcEEEEEEecCCchhhh-----hhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcE-EEEEe
Q 006490          469 -GGNKKTLILQEIPEEGVK-----KILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPC-LLIAS  541 (643)
Q Consensus       469 -g~~~~~~i~d~~g~~~~~-----~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pv-ilv~N  541 (643)
                       .....++++||+|.....     .+.+... +..+|.+++|+|++.+..   .......+..       .+|+ ++|+|
T Consensus       180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~-~i~pd~vllVvDa~~g~~---~~~~a~~~~~-------~~~i~gvVlN  248 (504)
T 2j37_W          180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVAN-AIQPDNIVYVMDASIGQA---CEAQAKAFKD-------KVDVASVIVT  248 (504)
T ss_dssp             HHTTCCEEEEEECCCCTTCHHHHHHHHHHHH-HHCCSEEEEEEETTCCTT---HHHHHHHHHH-------HHCCCCEEEE
T ss_pred             HHCCCcEEEEeCCCCcccchhHHHHHHHHHh-hhcCceEEEEEecccccc---HHHHHHHHHh-------hcCceEEEEe
Confidence             023467889999964321     1111111 237999999999987643   2222223322       2564 78899


Q ss_pred             CCCCCCccccHHHHHHHHHHhCCC-----------------CcEEeeeccC-C-HHHHHHHHHHH
Q 006490          542 KDDLKPYTMAVQDSARVTQELGIE-----------------PPIPVSMKSK-D-LNNVFSRIIWA  587 (643)
Q Consensus       542 K~Dl~~~~~~~~~~~~~~~~~~~~-----------------~~~~vSa~~g-~-i~~l~~~l~~~  587 (643)
                      |+|.......   ...+...++.+                 +.+++|+++| | +.++++++.+.
T Consensus       249 K~D~~~~~g~---~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          249 KLDGHAKGGG---ALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             CTTSCCCCTH---HHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             CCccccchHH---HHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence            9998753221   22233344332                 3456899999 8 99999998866

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=98.61  E-value=1.8e-08  Score=107.89  Aligned_cols=151  Identities=14%  Similarity=0.098  Sum_probs=86.6

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHh------cCCC--CCCC---CCCC----------CCeeeCC---------------cc
Q 006490           11 TGVRVVVVGDRGTGKSSLIAAAA------TESV--PEKV---PPVH----------APTRLPP---------------DF   54 (643)
Q Consensus        11 ~~~kI~lvG~~~vGKSsL~n~l~------~~~~--~~~~---~~~~----------~~~~~~~---------------~~   54 (643)
                      +...|+|+|.+||||||++++|.      +.+.  +...   +...          +......               .+
T Consensus       100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~  179 (504)
T 2j37_W          100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF  179 (504)
T ss_dssp             --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence            45679999999999999999998      4431  1110   0000          0000000               01


Q ss_pred             cCCceeEEEEeCCCCCcchh-hhH---Hh--hccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcE-EEEEecccC
Q 006490           55 YPDRVPVTIIDTSSSLENKG-KLN---EE--LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPI-IVAGCKLDL  127 (643)
Q Consensus        55 ~~~~~~~~i~Dt~G~~~~~~-~~~---~~--~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pv-ilv~NK~D~  127 (643)
                      ...++.+.|+||||...... ...   ..  +..+|.+++|+|+........    ....+..   .+|+ ++|+||+|.
T Consensus       180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~----~a~~~~~---~~~i~gvVlNK~D~  252 (504)
T 2j37_W          180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEA----QAKAFKD---KVDVASVIVTKLDG  252 (504)
T ss_dssp             HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHH----HHHHHHH---HHCCCCEEEECTTS
T ss_pred             HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHH----HHHHHHh---hcCceEEEEeCCcc
Confidence            11567899999999764221 111   11  237899999999877543221    2333333   2575 889999998


Q ss_pred             CCCCccchhhhhhhHHHHhhc----------------ccceEEEeCcccCCC-hhHHHHHHHHH
Q 006490          128 RGDHNATSLEEVMGPIMQQFR----------------EIETCVECSATTMIQ-VPDVFYYAQKA  174 (643)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~Sa~~~~g-i~~l~~~i~~~  174 (643)
                      ......      ...+...++                .+.+.+.+|+..|.| +.+|++.+.+.
T Consensus       253 ~~~~g~------~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          253 HAKGGG------ALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             CCCCTH------HHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             ccchHH------HHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence            743221      111112221                112334579999999 99998887654

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=98.54  E-value=7.9e-08  Score=88.95  Aligned_cols=106  Identities=8%  Similarity=0.008  Sum_probs=66.2

Q ss_pred             CCCCcchhhhHHhhccCCEEEEEEECCCcccHHHHHHHH---HHHHHhc--CCCCcEEEEEecc-cCCCCCccchhhhhh
Q 006490           67 SSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYW---LPELRRL--EIKVPIIVAGCKL-DLRGDHNATSLEEVM  140 (643)
Q Consensus        67 ~G~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~---~~~l~~~--~~~~pvilv~NK~-D~~~~~~~~~~~~~~  140 (643)
                      +|+......|..|+.++|++|||+|.+++...+ ...++   ...+...  -.+.|++|.+||. |+...-.   ..+..
T Consensus       110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams---~~EI~  185 (227)
T 3l82_B          110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMP---CFYLA  185 (227)
T ss_dssp             -------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCC---HHHHH
T ss_pred             CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCC---HHHHH
Confidence            477778889999999999999999999885544 33233   3333322  1478999999995 6754322   22222


Q ss_pred             hHHHH-hhcccceEEEeCcccCCChhHHHHHHHHHHh
Q 006490          141 GPIMQ-QFREIETCVECSATTMIQVPDVFYYAQKAVL  176 (643)
Q Consensus       141 ~~~~~-~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~  176 (643)
                      +.+.. .+..--.+..|||.+|+|+.+-++|+.+.+.
T Consensus       186 e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~  222 (227)
T 3l82_B          186 HELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE  222 (227)
T ss_dssp             HHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred             HHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHH
Confidence            22111 1122225799999999999999999987654

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.49  E-value=4.4e-07  Score=94.65  Aligned_cols=141  Identities=16%  Similarity=0.168  Sum_probs=70.9

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC----CCcccceEEEEEEcCCCcEEEEEEecCCchhh-------h-----
Q 006490          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYA----PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV-------K-----  486 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~----~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~-------~-----  486 (643)
                      .++++|+|++|+|||||+|.|+|..+.....    +..............+....+.++|++|-...       .     
T Consensus        42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~  121 (427)
T 2qag_B           42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEF  121 (427)
T ss_dssp             EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHH
Confidence            4679999999999999999999975432111    11111111122233322335667887763211       0     


Q ss_pred             ---hhhccHH----------hhccC--C-EEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccc
Q 006490          487 ---KILSNKE----------ALASC--D-VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM  550 (643)
Q Consensus       487 ---~~~~~~~----------~~~~a--d-~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~  550 (643)
                         .+.....          .+.++  | +++++.|+..+.+-.+ ..++..+.     .  +.|+|+|.||+|......
T Consensus       122 i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D-ieilk~L~-----~--~~~vI~Vi~KtD~Lt~~E  193 (427)
T 2qag_B          122 IDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD-LVTMKKLD-----S--KVNIIPIIAKADAISKSE  193 (427)
T ss_dssp             HHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH-HHHHHHTC-----S--CSEEEEEESCGGGSCHHH
T ss_pred             HHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH-HHHHHHHh-----h--CCCEEEEEcchhccchHH
Confidence               0000000          11223  3 4667778776544222 22333322     1  799999999999887554


Q ss_pred             cHHHHHHHHH---HhCCCCcEEeee
Q 006490          551 AVQDSARVTQ---ELGIEPPIPVSM  572 (643)
Q Consensus       551 ~~~~~~~~~~---~~~~~~~~~vSa  572 (643)
                      .......+.+   ..|+. ++++|.
T Consensus       194 ~~~l~~~I~~~L~~~gi~-I~~is~  217 (427)
T 2qag_B          194 LTKFKIKITSELVSNGVQ-IYQFPT  217 (427)
T ss_dssp             HHHHHHHHHHHHBTTBCC-CCCCC-
T ss_pred             HHHHHHHHHHHHHHcCCc-EEecCC
Confidence            4333333333   23444 677774

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.46  E-value=2e-06  Score=89.81  Aligned_cols=158  Identities=13%  Similarity=0.043  Sum_probs=87.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCCCCC---CCCCCCCeeeCCcccCCc-eeEEEEeCCCCCcchhhhHH-----hhccC
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATESVPEK---VPPVHAPTRLPPDFYPDR-VPVTIIDTSSSLENKGKLNE-----ELKRA   83 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~-----~~~~a   83 (643)
                      ..|+|+|++|||||||+|.|++......   ..+....++....+.... -.+.++|++|..........     .+...
T Consensus        70 ~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~  149 (413)
T 1tq4_A           70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEY  149 (413)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGGC
T ss_pred             eEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCcc
Confidence            4799999999999999999998432111   111011111111111111 25899999997532222222     23445


Q ss_pred             CEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCC-------CCcc--chhhhhhhHHHH----hhc-c
Q 006490           84 DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRG-------DHNA--TSLEEVMGPIMQ----QFR-E  149 (643)
Q Consensus        84 d~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~-------~~~~--~~~~~~~~~~~~----~~~-~  149 (643)
                      +.+++ +|.... .-..+  .+...+...  ++|+++|.||.|+.-       -+..  ....+.+..+..    +.+ .
T Consensus       150 ~~~~~-lS~G~~-~kqrv--~la~aL~~~--~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~  223 (413)
T 1tq4_A          150 DFFII-ISATRF-KKNDI--DIAKAISMM--KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIA  223 (413)
T ss_dssp             SEEEE-EESSCC-CHHHH--HHHHHHHHT--TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCS
T ss_pred             CCeEE-eCCCCc-cHHHH--HHHHHHHhc--CCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            66665 775531 12222  355556555  789999999999641       1111  011222233321    111 1


Q ss_pred             cceEEEeCc--ccCCChhHHHHHHHHHHh
Q 006490          150 IETCVECSA--TTMIQVPDVFYYAQKAVL  176 (643)
Q Consensus       150 ~~~~~~~Sa--~~~~gi~~l~~~i~~~~~  176 (643)
                      ....+.+|+  ..+.|++++.+.+.+.+.
T Consensus       224 ~~~iiliSsh~l~~~~~e~L~d~I~~~Lp  252 (413)
T 1tq4_A          224 EPPIFLLSNKNVCHYDFPVLMDKLISDLP  252 (413)
T ss_dssp             SCCEEECCTTCTTSTTHHHHHHHHHHHSC
T ss_pred             CCcEEEEecCcCCccCHHHHHHHHHHhCc
Confidence            235789999  567789999999887753

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.46  E-value=3.1e-07  Score=95.21  Aligned_cols=98  Identities=16%  Similarity=0.161  Sum_probs=72.4

Q ss_pred             CchhhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc----HHHHH
Q 006490          481 PEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA----VQDSA  556 (643)
Q Consensus       481 g~~~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~----~~~~~  556 (643)
                      ..+.+.++  ...+.+.+|++++|+|++++.     ..|...+.+...    ++|+++|+||+|+......    .+...
T Consensus        55 ~~e~f~~~--l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~----~~p~ilV~NK~DL~~~~~~~~~~~~~l~  123 (368)
T 3h2y_A           55 TDDDFLRI--LNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVG----NNKVLLVGNKADLIPKSVKHDKVKHWMR  123 (368)
T ss_dssp             -CHHHHHH--HHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSS----SSCEEEEEECGGGSCTTSCHHHHHHHHH
T ss_pred             CHHHHHHH--HHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhC----CCcEEEEEEChhcCCcccCHHHHHHHHH
Confidence            35567776  566777888999999999853     455556665543    7899999999999764432    23334


Q ss_pred             HHHHHhCCC--CcEEeeeccC-CHHHHHHHHHHHHh
Q 006490          557 RVTQELGIE--PPIPVSMKSK-DLNNVFSRIIWAAE  589 (643)
Q Consensus       557 ~~~~~~~~~--~~~~vSa~~g-~i~~l~~~l~~~~~  589 (643)
                      .+++..|+.  +++++||++| |++++++.+.+...
T Consensus       124 ~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~~  159 (368)
T 3h2y_A          124 YSAKQLGLKPEDVFLISAAKGQGIAELADAIEYYRG  159 (368)
T ss_dssp             HHHHHTTCCCSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             HHHHHcCCCcccEEEEeCCCCcCHHHHHhhhhhhcc
Confidence            446777873  5899999999 99999999987653

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.44  E-value=2.3e-07  Score=91.80  Aligned_cols=113  Identities=19%  Similarity=0.232  Sum_probs=65.2

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCCCC---------CCCCCCCCeeeCCcccCC--ceeEEEEeCCCCCcchh------
Q 006490           12 GVRVVVVGDRGTGKSSLIAAAATESVPE---------KVPPVHAPTRLPPDFYPD--RVPVTIIDTSSSLENKG------   74 (643)
Q Consensus        12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~---------~~~~~~~~~~~~~~~~~~--~~~~~i~Dt~G~~~~~~------   74 (643)
                      .++++|+|++|+|||||+|.|++.....         ..+.......+...+...  ...++++|++|......      
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~   81 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE   81 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence            4789999999999999999998753211         111111111111111111  23689999999753110      


Q ss_pred             hhH----------------------HhhccCCEEEEEEECC-CcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCC
Q 006490           75 KLN----------------------EELKRADAVVLTYACN-QQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRG  129 (643)
Q Consensus        75 ~~~----------------------~~~~~ad~il~v~d~~-~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~  129 (643)
                      ...                      ..+..+++.++++|.. .+.+..+  ..++..+...   .++|+|.||+|...
T Consensus        82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD--~~~l~~L~~~---~~vI~Vi~K~D~lt  154 (270)
T 3sop_A           82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD--LEFMKHLSKV---VNIIPVIAKADTMT  154 (270)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH--HHHHHHHHTT---SEEEEEETTGGGSC
T ss_pred             HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH--HHHHHHHHhc---CcEEEEEeccccCC
Confidence            000                      1234469999999843 3333333  3466666543   89999999999764

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.44  E-value=2.3e-07  Score=96.87  Aligned_cols=113  Identities=18%  Similarity=0.182  Sum_probs=62.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCC-CCCCee--eCCcccCCc--eeEEEEeCCCCCcchh------------
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATESVPEK-VPP-VHAPTR--LPPDFYPDR--VPVTIIDTSSSLENKG------------   74 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~-~~~-~~~~~~--~~~~~~~~~--~~~~i~Dt~G~~~~~~------------   74 (643)
                      ++++|+|++|+|||||+|.|++..+... ... ..+.+.  +...+...+  ..++++|++|......            
T Consensus        43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i  122 (427)
T 2qag_B           43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFI  122 (427)
T ss_dssp             EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHH
Confidence            3599999999999999999998764321 111 111222  222222222  3689999999764211            


Q ss_pred             --hhHHhh-------------ccC--C-EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCC
Q 006490           75 --KLNEEL-------------KRA--D-AVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD  130 (643)
Q Consensus        75 --~~~~~~-------------~~a--d-~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~  130 (643)
                        .+..++             .++  | +++|+.|.....+..++  .+++.+.   .+.|+|+|.||+|....
T Consensus       123 ~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Di--eilk~L~---~~~~vI~Vi~KtD~Lt~  191 (427)
T 2qag_B          123 DAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDL--VTMKKLD---SKVNIIPIIAKADAISK  191 (427)
T ss_dssp             HHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHH--HHHHHTC---SCSEEEEEESCGGGSCH
T ss_pred             HHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHH--HHHHHHh---hCCCEEEEEcchhccch
Confidence              111111             122  3 36666675544443332  3555554   47999999999998653

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.39  E-value=1.9e-06  Score=89.95  Aligned_cols=154  Identities=17%  Similarity=0.151  Sum_probs=87.5

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC------CCcccceEEEEEEcCCCcEEEEEEecCCchh----hhhhhcc
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYA------PTTGEQYAVNVVDQPGGNKKTLILQEIPEEG----VKKILSN  491 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~------~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~----~~~~~~~  491 (643)
                      ....++|+|++|||||||+|.|+|-.......      +++...   .....+ ......++|++|...    ..... .
T Consensus        68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~---~v~q~~-~~~~ltv~D~~g~~~~~~~~~~~L-~  142 (413)
T 1tq4_A           68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMER---HPYKHP-NIPNVVFWDLPGIGSTNFPPDTYL-E  142 (413)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCC---EEEECS-SCTTEEEEECCCGGGSSCCHHHHH-H
T ss_pred             CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeE---Eecccc-ccCCeeehHhhcccchHHHHHHHH-H
Confidence            34579999999999999999999954322111      111111   122222 222456688887421    11111 1


Q ss_pred             HHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC------------ccccHHHHHHHH
Q 006490          492 KEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP------------YTMAVQDSARVT  559 (643)
Q Consensus       492 ~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~------------~~~~~~~~~~~~  559 (643)
                      ...+...+.+++ ++...+.  ++...+...+...      ++|+++|.||.|+.-            .....+.+.++.
T Consensus       143 ~~~L~~~~~~~~-lS~G~~~--kqrv~la~aL~~~------~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~  213 (413)
T 1tq4_A          143 KMKFYEYDFFII-ISATRFK--KNDIDIAKAISMM------KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNC  213 (413)
T ss_dssp             HTTGGGCSEEEE-EESSCCC--HHHHHHHHHHHHT------TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHH
T ss_pred             HcCCCccCCeEE-eCCCCcc--HHHHHHHHHHHhc------CCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHH
Confidence            112345566665 7776321  2222334444443      789999999999741            111233344443


Q ss_pred             H----HhC--CCCcEEeee--ccC-CHHHHHHHHHHHHh
Q 006490          560 Q----ELG--IEPPIPVSM--KSK-DLNNVFSRIIWAAE  589 (643)
Q Consensus       560 ~----~~~--~~~~~~vSa--~~g-~i~~l~~~l~~~~~  589 (643)
                      .    ..+  ...++.+|+  ..+ |++++.+.+.+.+.
T Consensus       214 ~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lp  252 (413)
T 1tq4_A          214 VNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLP  252 (413)
T ss_dssp             HHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSC
T ss_pred             HHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCc
Confidence            1    223  345789999  566 79999999988763

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=98.36  E-value=1.8e-07  Score=91.03  Aligned_cols=102  Identities=14%  Similarity=0.068  Sum_probs=68.7

Q ss_pred             CCchhhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHH---HHH-HhcCCCCCCCcEEEEEeC-CCCCCccccHHH
Q 006490          480 IPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLV---EVA-RLGEDSGYGVPCLLIASK-DDLKPYTMAVQD  554 (643)
Q Consensus       480 ~g~~~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~---~i~-~~~~~~~~~~pvilv~NK-~Dl~~~~~~~~~  554 (643)
                      .|++.+..+  +..|+.++|++|+|+|++|.+.++ ....+.   .+. +.....  +.|++|.+|| -|+... .   .
T Consensus       195 GGQ~~lRpl--Wr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~--~apLLVfANKkQDlp~A-m---s  265 (312)
T 3l2o_B          195 GSRYSVIPQ--IQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSS--GRPLLVLSCISQGDVKR-M---P  265 (312)
T ss_dssp             --CCCCCHH--HHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCT--TCCEEEEEEESSTTSCB-C---C
T ss_pred             CCHHHHHHH--HHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcC--CCeEEEEeCCcccccCC-C---C
Confidence            466777777  889999999999999999876433 222222   121 111011  8999999997 577542 1   2


Q ss_pred             HHHHHHHhCCC------CcEEeeeccC-CHHHHHHHHHHHHhC
Q 006490          555 SARVTQELGIE------PPIPVSMKSK-DLNNVFSRIIWAAEH  590 (643)
Q Consensus       555 ~~~~~~~~~~~------~~~~vSa~~g-~i~~l~~~l~~~~~~  590 (643)
                      ..++.+.+++.      .+..|||++| |+.+-+++|.+.+..
T Consensus       266 ~~EI~e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~  308 (312)
T 3l2o_B          266 CFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES  308 (312)
T ss_dssp             HHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC
T ss_pred             HHHHHHHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHh
Confidence            33444444432      3789999999 999999999998753

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.33  E-value=5.8e-07  Score=93.26  Aligned_cols=98  Identities=20%  Similarity=0.248  Sum_probs=70.7

Q ss_pred             CchhhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc----HHHHH
Q 006490          481 PEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA----VQDSA  556 (643)
Q Consensus       481 g~~~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~----~~~~~  556 (643)
                      .++.+.++  ...++..++++++|+|++++.+     .|...+.+...    ++|+++|+||+|+......    .+...
T Consensus        57 ~~e~f~~~--L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~----~~piilV~NK~DLl~~~~~~~~~~~~l~  125 (369)
T 3ec1_A           57 DDDDFLSM--LHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAA----DNPILLVGNKADLLPRSVKYPKLLRWMR  125 (369)
T ss_dssp             --CHHHHH--HHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCT----TSCEEEEEECGGGSCTTCCHHHHHHHHH
T ss_pred             CHHHHHHH--HHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhC----CCCEEEEEEChhcCCCccCHHHHHHHHH
Confidence            46677776  4566689999999999999753     34444444433    7899999999999865332    23333


Q ss_pred             HHHHHhCCC--CcEEeeeccC-CHHHHHHHHHHHHh
Q 006490          557 RVTQELGIE--PPIPVSMKSK-DLNNVFSRIIWAAE  589 (643)
Q Consensus       557 ~~~~~~~~~--~~~~vSa~~g-~i~~l~~~l~~~~~  589 (643)
                      .+.+..|+.  +++.+||++| |++++++.+.+...
T Consensus       126 ~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~  161 (369)
T 3ec1_A          126 RMAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYRE  161 (369)
T ss_dssp             HHHHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred             HHHHHcCCCcccEEEEECCCCCCHHHHHHHHHhhcc
Confidence            445666773  5899999999 99999999987664

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.32  E-value=1e-06  Score=87.14  Aligned_cols=135  Identities=16%  Similarity=0.235  Sum_probs=69.9

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC--------C-CcccceEEEEEEcCCCcEEEEEEecCCchh---------
Q 006490          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYA--------P-TTGEQYAVNVVDQPGGNKKTLILQEIPEEG---------  484 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~--------~-t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~---------  484 (643)
                      .++++|+|++|+|||||+|.|+|........        + +............++-...+.++|++|-..         
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~   81 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE   81 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence            3789999999999999999999854332211        1 111111111111111222455677765210         


Q ss_pred             -hhhhhc----------------cHHhhccCCEEEEEEeCC-ChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCC
Q 006490          485 -VKKILS----------------NKEALASCDVTIFVYDSS-DEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLK  546 (643)
Q Consensus       485 -~~~~~~----------------~~~~~~~ad~illv~D~s-~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~  546 (643)
                       ......                ..-.+..+++.++++|.. .+.+-. ....+..+.+       ..++|+|+||+|..
T Consensus        82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~l-D~~~l~~L~~-------~~~vI~Vi~K~D~l  153 (270)
T 3sop_A           82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPL-DLEFMKHLSK-------VVNIIPVIAKADTM  153 (270)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHH-HHHHHHHHHT-------TSEEEEEETTGGGS
T ss_pred             HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHH-HHHHHHHHHh-------cCcEEEEEeccccC
Confidence             111000                011234579999999965 443322 2334444433       47999999999988


Q ss_pred             CccccH---HHHHHHHHHhCCC
Q 006490          547 PYTMAV---QDSARVTQELGIE  565 (643)
Q Consensus       547 ~~~~~~---~~~~~~~~~~~~~  565 (643)
                      ......   ..+.......+..
T Consensus       154 t~~e~~~~k~~i~~~l~~~~i~  175 (270)
T 3sop_A          154 TLEEKSEFKQRVRKELEVNGIE  175 (270)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHHHHHHHHHcCcc
Confidence            754432   2333334455655

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=98.29  E-value=7.8e-07  Score=86.54  Aligned_cols=108  Identities=7%  Similarity=-0.008  Sum_probs=71.2

Q ss_pred             CCCCCcchhhhHHhhccCCEEEEEEECCCcccHHHHHHH---HHHHHHhc--CCCCcEEEEEec-ccCCCCCccchhhhh
Q 006490           66 TSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSY---WLPELRRL--EIKVPIIVAGCK-LDLRGDHNATSLEEV  139 (643)
Q Consensus        66 t~G~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~---~~~~l~~~--~~~~pvilv~NK-~D~~~~~~~~~~~~~  139 (643)
                      .+|+......|..|+.++|++|||+|.+|++.++ ...+   +...+...  -.+.|++|.+|| .|+...-.   ..+.
T Consensus       194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams---~~EI  269 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMP---CFYL  269 (312)
T ss_dssp             ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCC---HHHH
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCC---HHHH
Confidence            4677888889999999999999999999887544 2222   22334221  248999999997 57754322   1222


Q ss_pred             hhHHHH-hhcccceEEEeCcccCCChhHHHHHHHHHHhC
Q 006490          140 MGPIMQ-QFREIETCVECSATTMIQVPDVFYYAQKAVLH  177 (643)
Q Consensus       140 ~~~~~~-~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~~  177 (643)
                      .+.+.. .+..--.+..|||.+|+|+.+-++|+.+.+..
T Consensus       270 ~e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~  308 (312)
T 3l2o_B          270 AHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES  308 (312)
T ss_dssp             HHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC
T ss_pred             HHHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHh
Confidence            222111 11222257999999999999999999987643

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.16  E-value=2.7e-06  Score=84.65  Aligned_cols=98  Identities=14%  Similarity=0.101  Sum_probs=64.5

Q ss_pred             EecCCchhhhhhhccHHhhccCCEEEEEEeCCChhhHH--HHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHH
Q 006490          477 LQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWK--RTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQD  554 (643)
Q Consensus       477 ~d~~g~~~~~~~~~~~~~~~~ad~illv~D~s~~~s~~--~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~  554 (643)
                      -+.+|+. .....+....+..+|+++.|+|+.+|.+..  .+..++       .    ++|+++|+||+|+.+..... .
T Consensus         4 ~w~PGhm-~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l-------~----~kp~ilVlNK~DL~~~~~~~-~   70 (282)
T 1puj_A            4 QWFPGHM-AKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL-------K----NKPRIMLLNKADKADAAVTQ-Q   70 (282)
T ss_dssp             -----CT-THHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC-------S----SSCEEEEEECGGGSCHHHHH-H
T ss_pred             cCCchHH-HHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH-------C----CCCEEEEEECcccCCHHHHH-H
Confidence            3456653 222333677899999999999999987653  222222       2    79999999999998732211 1


Q ss_pred             HHHHHHHhCCCCcEEeeeccC-CHHHHHHHHHHHH
Q 006490          555 SARVTQELGIEPPIPVSMKSK-DLNNVFSRIIWAA  588 (643)
Q Consensus       555 ~~~~~~~~~~~~~~~vSa~~g-~i~~l~~~l~~~~  588 (643)
                      ..++.+..+++ ++++||+++ |++++++.+.+.+
T Consensus        71 ~~~~~~~~g~~-~i~iSA~~~~gi~~L~~~i~~~l  104 (282)
T 1puj_A           71 WKEHFENQGIR-SLSINSVNGQGLNQIVPASKEIL  104 (282)
T ss_dssp             HHHHHHTTTCC-EEECCTTTCTTGGGHHHHHHHHH
T ss_pred             HHHHHHhcCCc-EEEEECCCcccHHHHHHHHHHHH
Confidence            12222334664 899999999 9999998877754

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.11  E-value=1.1e-05  Score=84.53  Aligned_cols=138  Identities=12%  Similarity=0.013  Sum_probs=77.0

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhc------CCCCCCCCCCcc-------------cceEEEEEEcCC-------------
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLE------RPFSENYAPTTG-------------EQYAVNVVDQPG-------------  469 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~------~~~~~~~~~t~~-------------~~~~~~~v~~~g-------------  469 (643)
                      .+..|+++|.+||||||++..|..      .+.......+.+             .+..+.......             
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a  178 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF  178 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence            356899999999999999999973      222111111110             011111111100             


Q ss_pred             --CcEEEEEEecCCchhhh----hhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCC
Q 006490          470 --GNKKTLILQEIPEEGVK----KILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKD  543 (643)
Q Consensus       470 --~~~~~~i~d~~g~~~~~----~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~  543 (643)
                        ....++++||+|.....    .-.+.......+|.+++|+|++.+..   .......+.+.      -.+..+|+||+
T Consensus       179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~---a~~~a~~f~~~------~~i~gVIlTKl  249 (443)
T 3dm5_A          179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQ---AYNQALAFKEA------TPIGSIIVTKL  249 (443)
T ss_dssp             HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HHHHHHHHHHS------CTTEEEEEECC
T ss_pred             HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchh---HHHHHHHHHhh------CCCeEEEEECC
Confidence              12467789999842211    11112234457899999999987633   23333344332      34567889999


Q ss_pred             CCCCccccHHHHHHHHHHhCCCCcEEeee
Q 006490          544 DLKPYTMAVQDSARVTQELGIEPPIPVSM  572 (643)
Q Consensus       544 Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa  572 (643)
                      |.....   ..+..+....+.+ +.+++.
T Consensus       250 D~~~~g---G~~ls~~~~~g~P-I~fig~  274 (443)
T 3dm5_A          250 DGSAKG---GGALSAVAATGAP-IKFIGT  274 (443)
T ss_dssp             SSCSSH---HHHHHHHHTTCCC-EEEEEC
T ss_pred             CCcccc---cHHHHHHHHHCCC-EEEEEc
Confidence            987632   2344455566765 666665

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.07  E-value=3.6e-06  Score=91.61  Aligned_cols=62  Identities=19%  Similarity=0.082  Sum_probs=42.6

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCc-c-----cCCceeEEEEeCCCCCc
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPD-F-----YPDRVPVTIIDTSSSLE   71 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~i~Dt~G~~~   71 (643)
                      .+..+|+|+|.||||||||+|+|++....-..++++...+.... +     ...+..+.++||||+..
T Consensus        36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~  103 (592)
T 1f5n_A           36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD  103 (592)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence            45578999999999999999999998743233433322221111 1     23567899999999864

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.07  E-value=2.8e-06  Score=89.57  Aligned_cols=111  Identities=22%  Similarity=0.226  Sum_probs=64.0

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcC------C--CCCCC---CC------------------CCCCeeeCCcc------cC
Q 006490           12 GVRVVVVGDRGTGKSSLIAAAATE------S--VPEKV---PP------------------VHAPTRLPPDF------YP   56 (643)
Q Consensus        12 ~~kI~lvG~~~vGKSsL~n~l~~~------~--~~~~~---~~------------------~~~~~~~~~~~------~~   56 (643)
                      ...|+|+|.+||||||+++.|...      +  ++...   +.                  ..+++.-+..+      ..
T Consensus        99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~  178 (432)
T 2v3c_C           99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF  178 (432)
T ss_dssp             CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence            356999999999999999998762      1  11100   00                  00010100000      02


Q ss_pred             CceeEEEEeCCCCCcchhh-hH-----HhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCC-c-EEEEEecccCC
Q 006490           57 DRVPVTIIDTSSSLENKGK-LN-----EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKV-P-IIVAGCKLDLR  128 (643)
Q Consensus        57 ~~~~~~i~Dt~G~~~~~~~-~~-----~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~-p-vilv~NK~D~~  128 (643)
                      .++.+.|+||||....... ..     ..+..+|.+++|+|+.....  ...  ....+.   ... | ..+|.||+|..
T Consensus       179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~--~~~--~~~~~~---~~~~~i~gvVlnK~D~~  251 (432)
T 2v3c_C          179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ--AGI--QAKAFK---EAVGEIGSIIVTKLDGS  251 (432)
T ss_dssp             SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG--HHH--HHHHHH---TTSCSCEEEEEECSSSC
T ss_pred             hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH--HHH--HHHHHh---hcccCCeEEEEeCCCCc
Confidence            5678999999997643211 11     11236899999999765432  111  222222   245 6 88999999985


Q ss_pred             C
Q 006490          129 G  129 (643)
Q Consensus       129 ~  129 (643)
                      .
T Consensus       252 ~  252 (432)
T 2v3c_C          252 A  252 (432)
T ss_dssp             S
T ss_pred             c
Confidence            3

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.04  E-value=3.4e-05  Score=80.82  Aligned_cols=141  Identities=14%  Similarity=0.085  Sum_probs=79.0

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhc------CCC--CC-C-C-CC----------CCCCeeeCCc---------------c
Q 006490           11 TGVRVVVVGDRGTGKSSLIAAAAT------ESV--PE-K-V-PP----------VHAPTRLPPD---------------F   54 (643)
Q Consensus        11 ~~~kI~lvG~~~vGKSsL~n~l~~------~~~--~~-~-~-~~----------~~~~~~~~~~---------------~   54 (643)
                      +...|+++|.+||||||++..|..      .+.  .. + + ++          ..+.......               .
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a  178 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF  178 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence            357799999999999999998873      221  00 1 0 00          0000011000               0


Q ss_pred             cCCceeEEEEeCCCCCcchh-hhH-----HhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCC
Q 006490           55 YPDRVPVTIIDTSSSLENKG-KLN-----EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLR  128 (643)
Q Consensus        55 ~~~~~~~~i~Dt~G~~~~~~-~~~-----~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~  128 (643)
                      ...++.+.|+||+|...... ...     .....+|.+++|+|+........    ....+.+.  -.+..+|.||+|..
T Consensus       179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~----~a~~f~~~--~~i~gVIlTKlD~~  252 (443)
T 3dm5_A          179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYN----QALAFKEA--TPIGSIIVTKLDGS  252 (443)
T ss_dssp             HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHH----HHHHHHHS--CTTEEEEEECCSSC
T ss_pred             HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHH----HHHHHHhh--CCCeEEEEECCCCc
Confidence            01357899999999654221 111     22446899999999876433222    23333333  34567899999986


Q ss_pred             CCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHH
Q 006490          129 GDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV  167 (643)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  167 (643)
                      ...      ..+..+....+  .|+..++.  |+++++|
T Consensus       253 ~~g------G~~ls~~~~~g--~PI~fig~--Ge~vddL  281 (443)
T 3dm5_A          253 AKG------GGALSAVAATG--APIKFIGT--GEKIDDI  281 (443)
T ss_dssp             SSH------HHHHHHHHTTC--CCEEEEEC--SSSTTCE
T ss_pred             ccc------cHHHHHHHHHC--CCEEEEEc--CCChHHh
Confidence            421      22233334444  25555654  8888654

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.03  E-value=1.8e-06  Score=91.07  Aligned_cols=150  Identities=17%  Similarity=0.101  Sum_probs=82.5

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC------CCCCCCC----C----------------------Ccccc--eEEEEEEcCC
Q 006490          424 FRCLLFGPQNAGKSALLNSFLER------PFSENYA----P----------------------TTGEQ--YAVNVVDQPG  469 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~------~~~~~~~----~----------------------t~~~~--~~~~~v~~~g  469 (643)
                      ..|+++|++||||||+++.|...      ....+..    +                      ++.+.  .....+... 
T Consensus       100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~-  178 (432)
T 2v3c_C          100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF-  178 (432)
T ss_dssp             CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT-
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh-
Confidence            46999999999999999999863      1111000    0                      11110  000001111 


Q ss_pred             CcEEEEEEecCCchhhhh-hh---ccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCC-c-EEEEEeCC
Q 006490          470 GNKKTLILQEIPEEGVKK-IL---SNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGV-P-CLLIASKD  543 (643)
Q Consensus       470 ~~~~~~i~d~~g~~~~~~-~~---~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~-p-vilv~NK~  543 (643)
                      ....++++||+|...... +.   .....+..+|.+++|+|++.+..   .......+..       .. | ..+|+||+
T Consensus       179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~~-------~~~~i~gvVlnK~  248 (432)
T 2v3c_C          179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAFKE-------AVGEIGSIIVTKL  248 (432)
T ss_dssp             SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHHHT-------TSCSCEEEEEECS
T ss_pred             hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHHhh-------cccCCeEEEEeCC
Confidence            234578899999543211 11   11222347999999999987632   2222222221       45 6 78999999


Q ss_pred             CCCCccccHHHHHHHHHHhCCC-----------------CcEEeeeccC-C-HHHHHHHHHHH
Q 006490          544 DLKPYTMAVQDSARVTQELGIE-----------------PPIPVSMKSK-D-LNNVFSRIIWA  587 (643)
Q Consensus       544 Dl~~~~~~~~~~~~~~~~~~~~-----------------~~~~vSa~~g-~-i~~l~~~l~~~  587 (643)
                      |.....   .....+....+.+                 |..++|+..| | +..+++.+.+.
T Consensus       249 D~~~~~---g~~l~~~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~s~l~g~gdi~~L~e~~~~~  308 (432)
T 2v3c_C          249 DGSAKG---GGALSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGDLESLLEKAEDM  308 (432)
T ss_dssp             SSCSTT---HHHHHHHHHSSCCEEEECCSSSSSSCCBCCHHHHHHHHTCSSCSSTTSSTTTSC
T ss_pred             CCccch---HHHHHHHHHHCCCEEEeecCccccccccCCHHHHHHHHcCCCcHHHHHHHHHHH
Confidence            986432   1233455555543                 2235677777 7 76666655443

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=97.92  E-value=4.5e-06  Score=82.07  Aligned_cols=55  Identities=31%  Similarity=0.311  Sum_probs=36.0

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCCCCCeeeCCcccCCceeEEEEeCCCCCc
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATESVPEK--VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLE   71 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~   71 (643)
                      ++|+++|.||||||||+|+|++......  .++   +++....+.. +..+.+|||||+..
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g---~T~~~~~~~~-~~~~~l~DtpG~~~  156 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPG---ITKGIQWFSL-ENGVKILDTPGILY  156 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC-------------CCSCEEEC-TTSCEEESSCEECC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccccccCCCCC---CccceEEEEe-CCCEEEEECCCccc
Confidence            6999999999999999999998775322  333   2221111221 34689999999764

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=97.79  E-value=5.1e-05  Score=82.61  Aligned_cols=63  Identities=14%  Similarity=0.141  Sum_probs=40.5

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCccc-ceEEEEE--EcC-CCcEEEEEEecCCch
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGE-QYAVNVV--DQP-GGNKKTLILQEIPEE  483 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~-~~~~~~v--~~~-g~~~~~~i~d~~g~~  483 (643)
                      ...++|+|+|.||||||||+|+|+|.........|+.. ...+..+  ..+ +....+.++||+|..
T Consensus        36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~  102 (592)
T 1f5n_A           36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG  102 (592)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred             CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcC
Confidence            45689999999999999999999998754322223211 1111111  111 234567889999954

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=97.72  E-value=5.4e-05  Score=79.37  Aligned_cols=137  Identities=16%  Similarity=0.065  Sum_probs=76.2

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHh------cCCCCCCCCCCcc-------------cceEEEEEE---------------cC
Q 006490          423 VFRCLLFGPQNAGKSALLNSFL------ERPFSENYAPTTG-------------EQYAVNVVD---------------QP  468 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~------~~~~~~~~~~t~~-------------~~~~~~~v~---------------~~  468 (643)
                      +..|+++|++||||||++..|.      +.+.......+.+             ....+....               ..
T Consensus        97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~  176 (433)
T 3kl4_A           97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFV  176 (433)
T ss_dssp             SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHH
Confidence            4679999999999999999997      2222111100000             011111000               00


Q ss_pred             CCcEEEEEEecCCchh--hh-hhhc---cHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeC
Q 006490          469 GGNKKTLILQEIPEEG--VK-KILS---NKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASK  542 (643)
Q Consensus       469 g~~~~~~i~d~~g~~~--~~-~~~~---~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK  542 (643)
                      .....++++||+|...  .. .+..   .......+|.+++|+|++.+..   .......+.+.      -.+..+|+||
T Consensus       177 ~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~---a~~~a~~f~~~------~~~~gVIlTK  247 (433)
T 3kl4_A          177 KNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQK---AYDLASRFHQA------SPIGSVIITK  247 (433)
T ss_dssp             TTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---GHHHHHHHHHH------CSSEEEEEEC
T ss_pred             hcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchH---HHHHHHHHhcc------cCCcEEEEec
Confidence            0234677899998533  11 1110   1122335799999999987533   33333444433      3467789999


Q ss_pred             CCCCCccccHHHHHHHHHHhCCCCcEEeee
Q 006490          543 DDLKPYTMAVQDSARVTQELGIEPPIPVSM  572 (643)
Q Consensus       543 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa  572 (643)
                      +|....   ...+-.+....+.+ +.+++.
T Consensus       248 lD~~a~---~G~als~~~~~g~P-i~fig~  273 (433)
T 3kl4_A          248 MDGTAK---GGGALSAVVATGAT-IKFIGT  273 (433)
T ss_dssp             GGGCSC---HHHHHHHHHHHTCE-EEEEEC
T ss_pred             cccccc---chHHHHHHHHHCCC-EEEEEC
Confidence            998653   22344555667776 777775

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=97.69  E-value=0.00014  Score=76.28  Aligned_cols=140  Identities=14%  Similarity=0.100  Sum_probs=76.5

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHh------cCCC--CC-C-C-CC----------CCCCeeeCC---------------cc
Q 006490           11 TGVRVVVVGDRGTGKSSLIAAAA------TESV--PE-K-V-PP----------VHAPTRLPP---------------DF   54 (643)
Q Consensus        11 ~~~kI~lvG~~~vGKSsL~n~l~------~~~~--~~-~-~-~~----------~~~~~~~~~---------------~~   54 (643)
                      +...|+++|++||||||++..|.      +.+.  .. + + ++          ..+......               ..
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a  175 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF  175 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence            35678999999999999999886      2221  00 0 0 00          000000000               01


Q ss_pred             cCCceeEEEEeCCCCCc--c-hhhhH-----HhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeccc
Q 006490           55 YPDRVPVTIIDTSSSLE--N-KGKLN-----EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLD  126 (643)
Q Consensus        55 ~~~~~~~~i~Dt~G~~~--~-~~~~~-----~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D  126 (643)
                      ...++.+.|+||||...  . .....     ...-.+|.+++|+|+........    ....+.+.  -.+..+|.||+|
T Consensus       176 ~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~----~a~~f~~~--~~~~gVIlTKlD  249 (433)
T 3kl4_A          176 VKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYD----LASRFHQA--SPIGSVIITKMD  249 (433)
T ss_dssp             TTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHH----HHHHHHHH--CSSEEEEEECGG
T ss_pred             HhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHH----HHHHHhcc--cCCcEEEEeccc
Confidence            12467899999999643  1 11111     11234699999999876433222    23334332  346788999999


Q ss_pred             CCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhH
Q 006490          127 LRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (643)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  166 (643)
                      .....      .....+....+  .|+..++.  |+++++
T Consensus       250 ~~a~~------G~als~~~~~g--~Pi~fig~--Ge~v~d  279 (433)
T 3kl4_A          250 GTAKG------GGALSAVVATG--ATIKFIGT--GEKIDE  279 (433)
T ss_dssp             GCSCH------HHHHHHHHHHT--CEEEEEEC--CSSSSC
T ss_pred             ccccc------hHHHHHHHHHC--CCEEEEEC--CCChHh
Confidence            86421      12233334444  25666664  777753

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.63  E-value=5.9e-05  Score=75.45  Aligned_cols=94  Identities=13%  Similarity=0.094  Sum_probs=54.8

Q ss_pred             CceeEEEEeCCCCCc--chh-hhH-----HhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCc-EEEEEecccC
Q 006490           57 DRVPVTIIDTSSSLE--NKG-KLN-----EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVP-IIVAGCKLDL  127 (643)
Q Consensus        57 ~~~~~~i~Dt~G~~~--~~~-~~~-----~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p-vilv~NK~D~  127 (643)
                      .++.+.|+||||...  ... ...     ..+..+|.+++|+|+....   +... ..+.+..   ..| ..+|.||+|.
T Consensus       179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~-~~~~~~~---~~~i~gvVlnk~D~  251 (297)
T 1j8m_F          179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYD-LASKFNQ---ASKIGTIIITKMDG  251 (297)
T ss_dssp             TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHH-HHHHHHH---TCTTEEEEEECGGG
T ss_pred             CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHH-HHHHHHh---hCCCCEEEEeCCCC
Confidence            567899999999765  321 221     2345789999999976432   2111 2233332   356 6789999997


Q ss_pred             CCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHH
Q 006490          128 RGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV  167 (643)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  167 (643)
                      ...      ......+...++  .++..++  .|++++++
T Consensus       252 ~~~------~g~~~~~~~~~~--~pi~~i~--~Ge~v~dl  281 (297)
T 1j8m_F          252 TAK------GGGALSAVAATG--ATIKFIG--TGEKIDEL  281 (297)
T ss_dssp             CTT------HHHHHHHHHTTT--CCEEEEE--CSSSTTCE
T ss_pred             Ccc------hHHHHHHHHHHC--cCEEEEe--CCCChhhc
Confidence            532      122334445554  2455544  57777643

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.57  E-value=4.9e-05  Score=76.06  Aligned_cols=84  Identities=17%  Similarity=0.216  Sum_probs=56.2

Q ss_pred             HHhhccCCEEEEEEeCCChhh-HHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc---HHHHHHHHHHhCCCCc
Q 006490          492 KEALASCDVTIFVYDSSDEYS-WKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA---VQDSARVTQELGIEPP  567 (643)
Q Consensus       492 ~~~~~~ad~illv~D~s~~~s-~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~---~~~~~~~~~~~~~~~~  567 (643)
                      ...+.++|.+++|+|+.+|.. ...+.+++......      ++|.++|+||+||.++...   .+......+..|.+ +
T Consensus        81 R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~------~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~-v  153 (307)
T 1t9h_A           81 RPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEAN------DIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYD-V  153 (307)
T ss_dssp             TTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTT------TCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCC-E
T ss_pred             HHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHC------CCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCe-E
Confidence            346899999999999997643 33344444333333      8999999999999875321   12223333445775 8


Q ss_pred             EEeeeccC-CHHHHHH
Q 006490          568 IPVSMKSK-DLNNVFS  582 (643)
Q Consensus       568 ~~vSa~~g-~i~~l~~  582 (643)
                      +.+||+++ |++++++
T Consensus       154 ~~~sa~~~~g~~~L~~  169 (307)
T 1t9h_A          154 YLTSSKDQDSLADIIP  169 (307)
T ss_dssp             EECCHHHHTTCTTTGG
T ss_pred             EEEecCCCCCHHHHHh
Confidence            99999988 7765543

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.52  E-value=0.00016  Score=72.36  Aligned_cols=141  Identities=16%  Similarity=0.145  Sum_probs=77.9

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhc------CCCCCCCCCCccc-----------ceEEEEEEcC-----------------
Q 006490          423 VFRCLLFGPQNAGKSALLNSFLE------RPFSENYAPTTGE-----------QYAVNVVDQP-----------------  468 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~~------~~~~~~~~~t~~~-----------~~~~~~v~~~-----------------  468 (643)
                      +-.++++|++|+||||++..|.+      .+.......+.+.           ...+.++..+                 
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~  177 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL  177 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence            44688899999999999999873      2221111111000           0001111100                 


Q ss_pred             CCcEEEEEEecCCchh--hh-hhhc---cHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCc-EEEEEe
Q 006490          469 GGNKKTLILQEIPEEG--VK-KILS---NKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVP-CLLIAS  541 (643)
Q Consensus       469 g~~~~~~i~d~~g~~~--~~-~~~~---~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~p-vilv~N  541 (643)
                      .....++++||+|...  .. .+..   .......+|.+++|+|++.+.   ........+..       ..| ..+|+|
T Consensus       178 ~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~~-------~~~i~gvVln  247 (297)
T 1j8m_F          178 SEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYDLASKFNQ-------ASKIGTIIIT  247 (297)
T ss_dssp             HTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHH-------TCTTEEEEEE
T ss_pred             hCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHHHHHHHHh-------hCCCCEEEEe
Confidence            0233578899998654  21 1210   112455799999999997542   22233333332       345 678899


Q ss_pred             CCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC-CHHH
Q 006490          542 KDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNN  579 (643)
Q Consensus       542 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g-~i~~  579 (643)
                      |+|....   ......+....+.+ +.+++  +| ++++
T Consensus       248 k~D~~~~---~g~~~~~~~~~~~p-i~~i~--~Ge~v~d  280 (297)
T 1j8m_F          248 KMDGTAK---GGGALSAVAATGAT-IKFIG--TGEKIDE  280 (297)
T ss_dssp             CGGGCTT---HHHHHHHHHTTTCC-EEEEE--CSSSTTC
T ss_pred             CCCCCcc---hHHHHHHHHHHCcC-EEEEe--CCCChhh
Confidence            9997642   23345567777776 66666  45 5543

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=97.47  E-value=0.00029  Score=77.89  Aligned_cols=25  Identities=24%  Similarity=0.417  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCC
Q 006490          425 RCLLFGPQNAGKSALLNSFLERPFS  449 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~~~~  449 (643)
                      .++|+|++|||||||++.+.|-..+
T Consensus        47 ~iaIvG~nGsGKSTLL~~I~Gl~~P   71 (608)
T 3szr_A           47 AIAVIGDQSSGKSSVLEALSGVALP   71 (608)
T ss_dssp             CEECCCCTTSCHHHHHHHHHSCC--
T ss_pred             eEEEECCCCChHHHHHHHHhCCCCC
Confidence            4999999999999999999997433

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=97.35  E-value=0.00021  Score=78.99  Aligned_cols=23  Identities=35%  Similarity=0.624  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 006490           14 RVVVVGDRGTGKSSLIAAAATES   36 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~~~   36 (643)
                      .|+|+|+.|+|||||++.+++-.
T Consensus        47 ~iaIvG~nGsGKSTLL~~I~Gl~   69 (608)
T 3szr_A           47 AIAVIGDQSSGKSSVLEALSGVA   69 (608)
T ss_dssp             CEECCCCTTSCHHHHHHHHHSCC
T ss_pred             eEEEECCCCChHHHHHHHHhCCC
Confidence            39999999999999999999864

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.22  E-value=0.00082  Score=68.54  Aligned_cols=82  Identities=20%  Similarity=0.141  Sum_probs=54.9

Q ss_pred             hhccCCEEEEEEeCCChh-hHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHH---HHhCCCCcEE
Q 006490          494 ALASCDVTIFVYDSSDEY-SWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVT---QELGIEPPIP  569 (643)
Q Consensus       494 ~~~~ad~illv~D~s~~~-s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~---~~~~~~~~~~  569 (643)
                      .+.++|.+++|.. .+|. +...+.+++......      ++|.++|+||+||.++.. .+..+.+.   +..|++ ++.
T Consensus       127 i~anvD~v~iv~a-~~P~~~~~~i~r~L~~a~~~------~~~~iivlNK~DL~~~~~-~~~~~~~~~~y~~~G~~-v~~  197 (358)
T 2rcn_A          127 IAANIDQIVIVSA-ILPELSLNIIDRYLVGCETL------QVEPLIVLNKIDLLDDEG-MDFVNEQMDIYRNIGYR-VLM  197 (358)
T ss_dssp             EEECCCEEEEEEE-STTTCCHHHHHHHHHHHHHH------TCEEEEEEECGGGCCHHH-HHHHHHHHHHHHTTTCC-EEE
T ss_pred             HHhcCCEEEEEEe-CCCCCCHHHHHHHHHHHHhc------CCCEEEEEECccCCCchh-HHHHHHHHHHHHhCCCc-EEE
Confidence            4689999998855 4553 334444554443333      789999999999987532 11233333   345776 899


Q ss_pred             eeeccC-CHHHHHHHH
Q 006490          570 VSMKSK-DLNNVFSRI  584 (643)
Q Consensus       570 vSa~~g-~i~~l~~~l  584 (643)
                      +||+++ |++++...+
T Consensus       198 ~Sa~~~~gl~~L~~~~  213 (358)
T 2rcn_A          198 VSSHTQDGLKPLEEAL  213 (358)
T ss_dssp             CBTTTTBTHHHHHHHH
T ss_pred             EecCCCcCHHHHHHhc
Confidence            999999 999887643

>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B

Probab=96.98  E-value=0.0024  Score=57.35  Aligned_cols=136  Identities=17%  Similarity=0.288  Sum_probs=93.5

Q ss_pred             chHHHHHHHHhhhhhcCCCCCCCCChHHHHHHhhhhcCC-CCCHHHHHHHHHHHHhhccCCcCCCCcChhhHHHHHHHHH
Q 006490          190 LKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNA-PLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFI  268 (643)
Q Consensus       190 ~~~~~~~~l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~  268 (643)
                      ..+.....+..+|...|.+.++.++..|+...... .+. ..+..++..+...   .      +..++++.|+.+.....
T Consensus        19 l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~-~g~~~~~~~~~~~l~~~---~------dg~i~~~eF~~~~~~~~   88 (166)
T 2mys_B           19 FDETEIEDFKEAFTVIDQNADGIIDKDDLRETFAA-MGRLNVKNEELDAMIKE---A------SGPINFTVFLTMFGEKL   88 (166)
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHH-hCCCCCCHHHHHHHHHH---C------CCCcCHHHHHHHHHHHh
Confidence            34556677889999999999999999999766554 344 6666666655442   1      45699999998866332


Q ss_pred             HcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCChhHHhhhhccCCCC
Q 006490          269 EKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPES  348 (643)
Q Consensus       269 ~~~~~~~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~  348 (643)
                      ..                                         ......++.+|+.||.|++|.++.+|+..++.... .
T Consensus        89 ~~-----------------------------------------~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g-~  126 (166)
T 2mys_B           89 KG-----------------------------------------ADPEDVIMGAFKVLDPDGKGSIKKSFLEELLTTGG-G  126 (166)
T ss_pred             cc-----------------------------------------CCcHHHHHHHHHHhCCCCCcceeHHHHHHHHHHcC-C
Confidence            10                                         01135678899999999999999999999987652 2


Q ss_pred             CCC---CCCCCCCccccCCcccchhhhhhhhh
Q 006490          349 PWD---EAPYKDAAETTALGNLTLKGFVSKWA  377 (643)
Q Consensus       349 p~~---~~~~~~~~~~~~~~~~~~~~~~~~w~  377 (643)
                      +..   ..........+.+|.|+...|+..+.
T Consensus       127 ~~~~~~~~~~~~~~D~d~dg~I~~~eF~~~~~  158 (166)
T 2mys_B          127 RFTPEEIKNMWAAFPPDVAGNVDYKNICYVIT  158 (166)
T ss_pred             CCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHH
Confidence            211   11122234457788888888877654

>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A

Probab=96.85  E-value=0.0037  Score=55.61  Aligned_cols=141  Identities=16%  Similarity=0.204  Sum_probs=97.1

Q ss_pred             cchHHHHHHHHhhhhhcCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhccCCcCCCCcChhhHHHHHHHHH
Q 006490          189 TLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFI  268 (643)
Q Consensus       189 ~~~~~~~~~l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~  268 (643)
                      ...+.....+.++|...|.+.++.++.+|+...... .+..+...++..+...+..   +  .+..++++.|+.+.....
T Consensus        16 ~l~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~-~~~~~~~~~~~~l~~~~d~---~--~~g~i~~~eF~~~~~~~~   89 (161)
T 3fwb_A           16 ELLEEQKQEIYEAFSLFDMNNDGFLDYHELKVAMKA-LGFELPKREILDLIDEYDS---E--GRHLMKYDDFYIVMGEKI   89 (161)
T ss_dssp             TSCHHHHHHHHHHHHHHCTTSSSEECHHHHHHHHHH-TTCCCCHHHHHHHHHHHCT---T--SSSCEEHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHH-cCCCCCHHHHHHHHHHhCc---C--CCCeEeHHHHHHHHHHHH
Confidence            355667788999999999999999999999776554 5667777777666655532   1  133599999988876433


Q ss_pred             HcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCChhHHhhhhccCCCC
Q 006490          269 EKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPES  348 (643)
Q Consensus       269 ~~~~~~~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~  348 (643)
                      ...                                         .....+..+|+.||.|++|.++.+|+..++......
T Consensus        90 ~~~-----------------------------------------~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~~~~  128 (161)
T 3fwb_A           90 LKR-----------------------------------------DPLDEIKRAFQLFDDDHTGKISIKNLRRVAKELGET  128 (161)
T ss_dssp             HTC-----------------------------------------CHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCC
T ss_pred             hcC-----------------------------------------CcHHHHHHHHHHHcCCCCCeEeHHHHHHHHHHhCCC
Confidence            211                                         124567889999999999999999999998865211


Q ss_pred             -C-CCCCCCCCCccccCCcccchhhhhhhh
Q 006490          349 -P-WDEAPYKDAAETTALGNLTLKGFVSKW  376 (643)
Q Consensus       349 -p-~~~~~~~~~~~~~~~~~~~~~~~~~~w  376 (643)
                       + ............+..|.|+...|+..+
T Consensus       129 ~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~  158 (161)
T 3fwb_A          129 LTDEELRAMIEEFDLDGDGEINENEFIAIC  158 (161)
T ss_dssp             CCHHHHHHHHHTTCSSSSSSEEHHHHHHHH
T ss_pred             CCHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence             1 111111223345677888888776654

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=96.83  E-value=0.0033  Score=63.59  Aligned_cols=142  Identities=11%  Similarity=0.134  Sum_probs=76.2

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCC------CCCCCcc-----------cceEEEEEEcC-C--------------
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSE------NYAPTTG-----------EQYAVNVVDQP-G--------------  469 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~------~~~~t~~-----------~~~~~~~v~~~-g--------------  469 (643)
                      .+--++++|++||||||+++.|.+.....      ....+.+           ....+..+.-. +              
T Consensus       128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~  207 (328)
T 3e70_C          128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHA  207 (328)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHH
Confidence            35579999999999999999998632111      0001110           00000011000 0              


Q ss_pred             --CcEEEEEEecCCchhhhh-hhc---cHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCC
Q 006490          470 --GNKKTLILQEIPEEGVKK-ILS---NKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKD  543 (643)
Q Consensus       470 --~~~~~~i~d~~g~~~~~~-~~~---~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~  543 (643)
                        ......++|++|...... +.+   .....-.+|-.+++.|+...   ++.......+.+..     + ..++++||.
T Consensus       208 ~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~---~~~~~~~~~~~~~~-----~-it~iilTKl  278 (328)
T 3e70_C          208 KARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG---NAIVEQARQFNEAV-----K-IDGIILTKL  278 (328)
T ss_dssp             HHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT---THHHHHHHHHHHHS-----C-CCEEEEECG
T ss_pred             HhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH---HHHHHHHHHHHHhc-----C-CCEEEEeCc
Confidence              012345689988532211 111   11122358999999998765   33444444444321     2 336778999


Q ss_pred             CCCCccccHHHHHHHHHHhCCCCcEEeeeccC-CHH
Q 006490          544 DLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLN  578 (643)
Q Consensus       544 Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g-~i~  578 (643)
                      |....   .-..-.+....+.+ +.+++  +| +++
T Consensus       279 D~~a~---~G~~l~~~~~~~~p-i~~i~--~Ge~v~  308 (328)
T 3e70_C          279 DADAR---GGAALSISYVIDAP-ILFVG--VGQGYD  308 (328)
T ss_dssp             GGCSC---CHHHHHHHHHHTCC-EEEEE--CSSSTT
T ss_pred             CCccc---hhHHHHHHHHHCCC-EEEEe--CCCCcc
Confidence            96442   22344667777876 77777  55 543

>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}

Probab=96.83  E-value=0.0013  Score=57.41  Aligned_cols=134  Identities=15%  Similarity=0.260  Sum_probs=89.6

Q ss_pred             HHHHHHHHhhhhhcCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhccCCcCCCCcChhhHHHHHHHHHHcC
Q 006490          192 PRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKG  271 (643)
Q Consensus       192 ~~~~~~l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~  271 (643)
                      +.....++++|...|.+.++.++..|+...... .+...+..++..+...         .+..++++.|+.+....... 
T Consensus         3 ~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~-~g~~~~~~~~~~~~~~---------~~g~i~~~eF~~~~~~~~~~-   71 (143)
T 3j04_B            3 QSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLAS-MGKNPTDEYLEGMMSE---------APGPINFTMFLTMFGEKLNG-   71 (143)
T ss_dssp             HHHHHHHHHHHTTTCSSCTTCCCHHHHHHHHHH-TSCCCCHHHHHTTTTT---------SSSCCCHHHHHHHHHHTTTS-
T ss_pred             HHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHH-hCCCCCHHHHHHHHHh---------CCCCcCHHHHHHHHHHHhcc-
Confidence            345567888999999999999999999776544 4556666655554432         35569999999886521100 


Q ss_pred             CccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCChhHHhhhhccCCC-CC-
Q 006490          272 RLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPE-SP-  349 (643)
Q Consensus       272 ~~~~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~-~p-  349 (643)
                                                              ......++.+|+.||.|++|.++.+|+..++..... .+ 
T Consensus        72 ----------------------------------------~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~  111 (143)
T 3j04_B           72 ----------------------------------------TDPEDVIRNAFACFDEEASGFIHEDHLRELLTTMGDRFTD  111 (143)
T ss_dssp             ----------------------------------------SCCHHHHHHHHTTSCSSSCCCCCTTTHHHHHHTSSSCCCH
T ss_pred             ----------------------------------------CCcHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCCCH
Confidence                                                    011356888999999999999999999999886521 11 


Q ss_pred             CCCCCCCCCccccCCcccchhhhhhhh
Q 006490          350 WDEAPYKDAAETTALGNLTLKGFVSKW  376 (643)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~w  376 (643)
                      .....+......+.+|.|+...|+...
T Consensus       112 ~~~~~~~~~~D~d~dg~i~~~eF~~~~  138 (143)
T 3j04_B          112 EEVDEMYREAPIDKKGNFNYVEFTRIL  138 (143)
T ss_dssp             HHHHHHHHHTTCCSSSCCCSTHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCcCcHHHHHHHH
Confidence            011111122345677788887776654

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=96.78  E-value=0.0018  Score=65.47  Aligned_cols=141  Identities=15%  Similarity=0.100  Sum_probs=74.2

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCC------C--CC-CCCCC------------CCCeeeCCccc-------------
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATES------V--PE-KVPPV------------HAPTRLPPDFY-------------   55 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~------~--~~-~~~~~------------~~~~~~~~~~~-------------   55 (643)
                      .+.--|+|+|++||||||+++.|.+.-      +  .. +....            .+.........             
T Consensus       127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~  206 (328)
T 3e70_C          127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQH  206 (328)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHH
Confidence            345679999999999999999987531      0  00 00000            00000000000             


Q ss_pred             --CCceeEEEEeCCCCCcchhhh-H-----HhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccC
Q 006490           56 --PDRVPVTIIDTSSSLENKGKL-N-----EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDL  127 (643)
Q Consensus        56 --~~~~~~~i~Dt~G~~~~~~~~-~-----~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~  127 (643)
                        ..+..+.++||+|........ .     ...-.+|-.+++.|.....   ++.. .+..+.+.  -..-++++||.|.
T Consensus       207 ~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~-~~~~~~~~--~~it~iilTKlD~  280 (328)
T 3e70_C          207 AKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVE-QARQFNEA--VKIDGIILTKLDA  280 (328)
T ss_dssp             HHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHH-HHHHHHHH--SCCCEEEEECGGG
T ss_pred             HHhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHH-HHHHHHHh--cCCCEEEEeCcCC
Confidence              124567889999975422211 1     1122478999999965543   2221 23333322  1234678899997


Q ss_pred             CCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhH
Q 006490          128 RGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (643)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  166 (643)
                      ....      -.+..+....+  .++..++  +|+++++
T Consensus       281 ~a~~------G~~l~~~~~~~--~pi~~i~--~Ge~v~d  309 (328)
T 3e70_C          281 DARG------GAALSISYVID--APILFVG--VGQGYDD  309 (328)
T ss_dssp             CSCC------HHHHHHHHHHT--CCEEEEE--CSSSTTC
T ss_pred             ccch------hHHHHHHHHHC--CCEEEEe--CCCCccc
Confidence            4321      12234444554  2555665  6777755

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=96.73  E-value=0.0011  Score=69.69  Aligned_cols=111  Identities=14%  Similarity=0.170  Sum_probs=62.5

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHh-------cCCC---CCC--CCCCC----------CCeeeCC---------------cc
Q 006490           12 GVRVVVVGDRGTGKSSLIAAAA-------TESV---PEK--VPPVH----------APTRLPP---------------DF   54 (643)
Q Consensus        12 ~~kI~lvG~~~vGKSsL~n~l~-------~~~~---~~~--~~~~~----------~~~~~~~---------------~~   54 (643)
                      ...|+++|.+||||||++..|.       +.+.   ..+  .+...          +......               ..
T Consensus       100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~~  179 (433)
T 2xxa_A          100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEA  179 (433)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHHH
Confidence            4578899999999999999887       3331   011  01000          0000000               00


Q ss_pred             cCCceeEEEEeCCCCCcchh-hhH-----HhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCc-EEEEEecccC
Q 006490           55 YPDRVPVTIIDTSSSLENKG-KLN-----EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVP-IIVAGCKLDL  127 (643)
Q Consensus        55 ~~~~~~~~i~Dt~G~~~~~~-~~~-----~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p-vilv~NK~D~  127 (643)
                      ...++.+.|+||||...... ...     ..+..+|.+++|+|+........    ....+..   ..+ .-+|.||+|.
T Consensus       180 ~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~~----~~~~f~~---~l~i~gvVlnK~D~  252 (433)
T 2xxa_A          180 KLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAAN----TAKAFNE---ALPLTGVVLTKVDG  252 (433)
T ss_dssp             HHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHHH----HHHHHHH---HSCCCCEEEECTTS
T ss_pred             HhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHHH----HHHHHhc---cCCCeEEEEecCCC
Confidence            12467899999999754322 121     12447899999999875432211    2222222   244 3468999997


Q ss_pred             CC
Q 006490          128 RG  129 (643)
Q Consensus       128 ~~  129 (643)
                      ..
T Consensus       253 ~~  254 (433)
T 2xxa_A          253 DA  254 (433)
T ss_dssp             SS
T ss_pred             Cc
Confidence            54

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=96.72  E-value=0.0017  Score=73.97  Aligned_cols=25  Identities=28%  Similarity=0.518  Sum_probs=21.1

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcC
Q 006490           11 TGVRVVVVGDRGTGKSSLIAAAATE   35 (643)
Q Consensus        11 ~~~kI~lvG~~~vGKSsL~n~l~~~   35 (643)
                      ..-.++|+|+||||||++++.+...
T Consensus       200 ~~~~vLL~G~pGtGKT~la~~la~~  224 (758)
T 3pxi_A          200 TKNNPVLIGEPGVGKTAIAEGLAQQ  224 (758)
T ss_dssp             SSCEEEEESCTTTTTHHHHHHHHHH
T ss_pred             CCCCeEEECCCCCCHHHHHHHHHHH
Confidence            3446999999999999999988754

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=96.71  E-value=0.0014  Score=68.75  Aligned_cols=26  Identities=31%  Similarity=0.239  Sum_probs=22.2

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcC
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATE   35 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~   35 (643)
                      .+-.-|+|+|++++|||+|+|+|++.
T Consensus        65 ~~v~vVsV~G~~~~GKStLLN~llg~   90 (447)
T 3q5d_A           65 KEVVAVSVAGAFRKGKSFLMDFMLRY   90 (447)
T ss_dssp             SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CceEEEEEECCCCCcHHHHHHHHhhh
Confidence            34556899999999999999999863

>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora erythraea} SCOP: a.39.1.5

Probab=96.70  E-value=0.0023  Score=57.99  Aligned_cols=147  Identities=21%  Similarity=0.264  Sum_probs=93.8

Q ss_pred             HHHHHHHhhhhhcCCCCCCCCChHHHHHH---hhhhcCCCCCHHHHHHHH--------HHHHhhccCCcCCCCcChhhHH
Q 006490          193 RCVRALKRIFIICDHDMDGALNDAELNEF---QVKCFNAPLQPAEIVGVK--------RVVQEKQHDGVNDLGLTLSGFL  261 (643)
Q Consensus       193 ~~~~~l~~~~~~~~~~~~~~l~~~el~~~---~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~f~  261 (643)
                      ...+.++++|...|.+.++.++.+|+...   .....+...+..++..+.        ..+...-.++  +..|+++.|+
T Consensus         4 ~~~~~l~~~F~~~D~d~~G~i~~~el~~~~~~~l~~~g~~~~~~~~~~l~~~~~~~~~~lf~~~D~d~--dg~i~~~Ef~   81 (176)
T 1nya_A            4 IASDRLKKRFDRWDFDGNGALERADFEKEAQHIAEAFGKDAGAAEVQTLKNAFGGLFDYLAKEAGVGS--DGSLTEEQFI   81 (176)
T ss_dssp             HHHHHHHHHHHHCCSSCCSSBCSHHHHHHHHHHHHHTSSCSSSHHHHHHHHHHHHHHHHHHHHHTSCT--TCCBCHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHhCCCC--CCeEcHHHHH
Confidence            34567888999999999999999999875   344577788888887665        3444332222  3359999999


Q ss_pred             HHHHHHHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCChhHHhhh
Q 006490          262 FLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDL  341 (643)
Q Consensus       262 ~~~~~~~~~~~~~~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~  341 (643)
                      .+...........                                  .+.......++.+|+.+|.|++|.++.+|+..+
T Consensus        82 ~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~~~F~~~D~d~~G~I~~~e~~~~  127 (176)
T 1nya_A           82 RVTENLIFEQGEA----------------------------------SFNRVLGPVVKGIVGMCDKNADGQINADEFAAW  127 (176)
T ss_dssp             HHHHHHHSSSCHH----------------------------------HHHHHHHHHHHHHHHHTCSSCCSEEEHHHHHHH
T ss_pred             HHHHHHhcCCchh----------------------------------hHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHH
Confidence            8876443111000                                  011122456788999999999999999999888


Q ss_pred             hccCCCCCC-CCCCCCCCccccCCcccchhhhhhhh
Q 006490          342 FLTAPESPW-DEAPYKDAAETTALGNLTLKGFVSKW  376 (643)
Q Consensus       342 ~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~w  376 (643)
                      +.... .+- ...........+.+|.|+...|...+
T Consensus       128 l~~~g-~~~~~~~~~~~~~D~d~dg~i~~~ef~~~~  162 (176)
T 1nya_A          128 LTALG-MSKAEAAEAFNQVDTNGNGELSLDELLTAV  162 (176)
T ss_dssp             HHHTT-CCHHHHHHHHHHHCTTCSSEEEHHHHHHHH
T ss_pred             HHHhC-CCHHHHHHHHHHhCCCCCCCCcHHHHHHHH
Confidence            87653 210 00111112334666777776665553

>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB: 2scp_A

Probab=96.64  E-value=0.003  Score=57.10  Aligned_cols=144  Identities=19%  Similarity=0.179  Sum_probs=92.5

Q ss_pred             HHHHHHHhhhhhcCCCCCCCCChHHHHHHhhhhc---CCCCCHHH-HHHHH-----HHHHhhccCCcCCCCcChhhHHHH
Q 006490          193 RCVRALKRIFIICDHDMDGALNDAELNEFQVKCF---NAPLQPAE-IVGVK-----RVVQEKQHDGVNDLGLTLSGFLFL  263 (643)
Q Consensus       193 ~~~~~l~~~~~~~~~~~~~~l~~~el~~~~~~~~---~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~f~~~  263 (643)
                      .....++++|...|.+.++.++.+|+........   +...+..+ +..+.     .++....    .+..|+++.|+.+
T Consensus         3 ~~~~~l~~~F~~~D~d~~G~i~~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~D----~~g~i~~~EF~~~   78 (174)
T 1q80_A            3 LWVQKMKTYFNRIDFDKDGAITRMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNFLTAVA----GGKGIDETTFINS   78 (174)
T ss_dssp             HHHHHHHHHHHHHCTTCSSEESHHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHTGGGTT----TTSCEEHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCCCcEeHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHhcC----CCCeEcHHHHHHH
Confidence            3456688889999999999999999977655433   25555555 44332     2222221    4455999999987


Q ss_pred             HHHHHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCChhHHhhhhc
Q 006490          264 HALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFL  343 (643)
Q Consensus       264 ~~~~~~~~~~~~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~~~  343 (643)
                      ........                                     .........++.+|+.+|.|++|.++.+|+..++.
T Consensus        79 ~~~~~~~~-------------------------------------~~~~~~~~~~~~~F~~~D~d~~G~i~~~e~~~~l~  121 (174)
T 1q80_A           79 MKEMVKNP-------------------------------------EAKSVVEGPLPLFFRAVDTNEDNNISRDEYGIFFG  121 (174)
T ss_dssp             HHHHTTST-------------------------------------TCHHHHHTHHHHHHHHHCTTSSSSBCHHHHHHHHH
T ss_pred             HHHHcCcc-------------------------------------cHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Confidence            66433100                                     01122346788999999999999999999999887


Q ss_pred             cCCCCCCCCCCCCCCccccCCcccchhhhhhhhh
Q 006490          344 TAPESPWDEAPYKDAAETTALGNLTLKGFVSKWA  377 (643)
Q Consensus       344 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~  377 (643)
                      ...-.+............+.+|.|+...|+..+.
T Consensus       122 ~~g~~~~~~~~~~~~~D~d~dg~i~~~ef~~~~~  155 (174)
T 1q80_A          122 MLGLDKTMAPASFDAIDTNNDGLLSLEEFVIAGS  155 (174)
T ss_dssp             HHTCCGGGHHHHHHHHCTTCSSSBCHHHHHHHHH
T ss_pred             HcCCCHHHHHHHHHHhCCCCCceEeHHHHHHHHH
Confidence            6521111111122234457788888888776643

>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A

Probab=96.63  E-value=0.004  Score=54.74  Aligned_cols=144  Identities=17%  Similarity=0.237  Sum_probs=96.0

Q ss_pred             chHHHHHHHHhhhhhcCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhccCCcCCCCcChhhHHHHHHHHHH
Q 006490          190 LKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIE  269 (643)
Q Consensus       190 ~~~~~~~~l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~  269 (643)
                      ..+.....+.++|...|.+.++.++..|+...... .+......++..+...+...     .+..++++.|+.+......
T Consensus         5 l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~-~~~~~~~~~~~~l~~~~d~~-----~~g~i~~~eF~~~~~~~~~   78 (153)
T 3ox6_A            5 LRPEEIEELREAFREFDKDKDGYINCRDLGNCMRT-MGYMPTEMELIELSQQINMN-----LGGHVDFDDFVELMGPKLL   78 (153)
T ss_dssp             CCHHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHHH-TTCCCCHHHHHHHHHHHHTT-----STTCCCHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH-cCCCCCHHHHHHHHHHhCCC-----CCccCcHHHHHHHHHHHhh
Confidence            34556677889999999999999999999766543 46677777777766665432     1345999999988653331


Q ss_pred             cCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCChhHHhhhhccCCCCC
Q 006490          270 KGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESP  349 (643)
Q Consensus       270 ~~~~~~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~p  349 (643)
                      ...                                     ........+..+|+.+|.|++|.++.+|+..++...-+.+
T Consensus        79 ~~~-------------------------------------~~~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~  121 (153)
T 3ox6_A           79 AET-------------------------------------ADMIGVKELRDAFREFDTNGDGEISTSELREAMRALLGHQ  121 (153)
T ss_dssp             TCC-------------------------------------HHHHCHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHHHSSC
T ss_pred             ccc-------------------------------------cccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhcCC
Confidence            110                                     0112245688899999999999999999999887632222


Q ss_pred             CCC---CCCCCCccccCCcccchhhhhhhh
Q 006490          350 WDE---APYKDAAETTALGNLTLKGFVSKW  376 (643)
Q Consensus       350 ~~~---~~~~~~~~~~~~~~~~~~~~~~~w  376 (643)
                      ...   .........+.+|.|+...|+..+
T Consensus       122 ~~~~~~~~~~~~~d~~~dg~i~~~eF~~~~  151 (153)
T 3ox6_A          122 VGHRDIEEIIRDVDLNGDGRVDFEEFVRMM  151 (153)
T ss_dssp             CCHHHHHHHHHHHCSSSSSSBCHHHHHHHT
T ss_pred             CCHHHHHHHHHHhCCCCCCeEeHHHHHHHH
Confidence            211   111122345677788887776543

>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A

Probab=96.61  E-value=0.0034  Score=56.48  Aligned_cols=142  Identities=16%  Similarity=0.197  Sum_probs=96.8

Q ss_pred             cchHHHHHHHHhhhhhcCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhccCCcCCCCcChhhHHHHHHHHH
Q 006490          189 TLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFI  268 (643)
Q Consensus       189 ~~~~~~~~~l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~  268 (643)
                      ...+.....+.++|...|.+.++.++..|+..... ..+...+..++..+...+.   .+  .+..++++.|+.+.....
T Consensus        21 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~-~~~~~~~~~~~~~~~~~~d---~~--~~g~i~~~eF~~~~~~~~   94 (169)
T 3qrx_A           21 GLTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMR-ALGFEPKKEEIKKMISEID---KD--GSGTIDFEEFLTMMTAKM   94 (169)
T ss_dssp             CCCHHHHHHHHHHHHHHCTTCCSEECHHHHHHHHH-HTSCCCCHHHHHHHHHHHC---SS--SSSSEEHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHH-HcCCCCCHHHHHHHHHHhc---CC--CCCcCCHHHHHHHHHHHh
Confidence            34566678899999999999999999999976653 4466777777766655542   11  234599999998866332


Q ss_pred             HcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCChhHHhhhhccCCC-
Q 006490          269 EKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPE-  347 (643)
Q Consensus       269 ~~~~~~~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~-  347 (643)
                      .                                         .......+..+|+.+|.|++|.++.+|+..++..... 
T Consensus        95 ~-----------------------------------------~~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~  133 (169)
T 3qrx_A           95 G-----------------------------------------ERDSREEILKAFRLFDDDNSGTITIKDLRRVAKELGEN  133 (169)
T ss_dssp             H-----------------------------------------HHHHHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHTTCC
T ss_pred             c-----------------------------------------ccCcHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHcCCC
Confidence            1                                         1123456788999999999999999999998886521 


Q ss_pred             CC-CCCCCCCCCccccCCcccchhhhhhhhh
Q 006490          348 SP-WDEAPYKDAAETTALGNLTLKGFVSKWA  377 (643)
Q Consensus       348 ~p-~~~~~~~~~~~~~~~~~~~~~~~~~~w~  377 (643)
                      .+ ............+.+|.|+...|+..+.
T Consensus       134 ~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~  164 (169)
T 3qrx_A          134 LTEEELQEMIAEADRNDDNEIDEDEFIRIMK  164 (169)
T ss_dssp             CCHHHHHHHHHHHCCSSSSCBCHHHHHHHHC
T ss_pred             CCHHHHHHHHHHhCCCCCCCEeHHHHHHHHH
Confidence            11 1111112234456778888888776654

>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo pealeii}

Probab=96.60  E-value=0.0049  Score=56.75  Aligned_cols=152  Identities=15%  Similarity=0.144  Sum_probs=95.6

Q ss_pred             hHHHHHHHHhhhhhc-CCCCCCCCChHHHHHHhhhhc---CCCCCHHHHHHHHHHHHhhc-----cCCcC-CCCcChhhH
Q 006490          191 KPRCVRALKRIFIIC-DHDMDGALNDAELNEFQVKCF---NAPLQPAEIVGVKRVVQEKQ-----HDGVN-DLGLTLSGF  260 (643)
Q Consensus       191 ~~~~~~~l~~~~~~~-~~~~~~~l~~~el~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-----~~~~~-~~~~~~~~f  260 (643)
                      .+...+.++++|... |.+.++.++.+|+........   +......++..+.+.+....     ....+ +..|+++.|
T Consensus         7 s~~~~~~l~~~F~~~~D~d~dG~i~~~E~~~~l~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~D~d~dG~i~~~Ef   86 (191)
T 2ccm_A            7 SDFQRNKILRVFNTFYDCNHDGVIEWDDFELAIKKICNLHSWPTDGKKHNEARATLKLIWDGLRKYADENEDEQVTKEEW   86 (191)
T ss_dssp             CHHHHHHHHHHHHHHTCTTCSSEECHHHHHHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHHHHCTTCSSCEEHHHH
T ss_pred             cHHHHHHHHHhccccccCCCCCeeeHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCeECHHHH
Confidence            345566788999999 999999999999977665543   66666677766663332221     11122 334999999


Q ss_pred             HHHHHHHHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCChhHHhh
Q 006490          261 LFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELED  340 (643)
Q Consensus       261 ~~~~~~~~~~~~~~~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~  340 (643)
                      +.+..........                       |          ..+.......+..+|+.+|.|++|.++.+|+..
T Consensus        87 ~~~~~~~~~~~~~-----------------------~----------~~~~~~~~~~~~~~F~~~D~d~dG~I~~~E~~~  133 (191)
T 2ccm_A           87 LKMWAECVKSVEK-----------------------G----------ESLPEWLTKYMNFMFDVNDTSGDNIIDKHEYST  133 (191)
T ss_dssp             HHHHHHHHHHHHT-----------------------T----------CCCCHHHHHHHHHHHHHHCTTCSSBCCHHHHHH
T ss_pred             HHHHHHHhccccc-----------------------h----------hhchHHHHHHHHHHHHHhCCCCCCcCcHHHHHH
Confidence            8876643210000                       0          011233456788999999999999999999998


Q ss_pred             hhccCCCCC-CCCCCCCCCccccCCcccchhhhhhhh
Q 006490          341 LFLTAPESP-WDEAPYKDAAETTALGNLTLKGFVSKW  376 (643)
Q Consensus       341 ~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~w  376 (643)
                      ++.... .+ ............+.+|.|+...|....
T Consensus       134 ~l~~~g-~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~  169 (191)
T 2ccm_A          134 VYMSYG-IPKSDCDAAFDTLSDGGKTMVTREIFARLW  169 (191)
T ss_dssp             HHHTTT-CCHHHHHHHHHHHTTTTTSCCBHHHHHHHH
T ss_pred             HHHHhC-CCHHHHHHHHHHhCCCCCCCcCHHHHHHHH
Confidence            886552 21 001111122344677888887776654

>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*

Probab=96.59  E-value=0.0096  Score=51.95  Aligned_cols=140  Identities=16%  Similarity=0.231  Sum_probs=92.2

Q ss_pred             HHHHHHHHhhhhhcCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhccCCcCCCCcChhhHHHHHHHHHHcC
Q 006490          192 PRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKG  271 (643)
Q Consensus       192 ~~~~~~l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~  271 (643)
                      +.....++++|...|.+.++.++..|+...... .+...+..++..+...+.....   +...++++.|+.+........
T Consensus         4 ~~~~~~l~~~F~~~D~~~~G~i~~~el~~~l~~-~~~~~~~~~~~~l~~~~~~~d~---~~g~i~~~eF~~~~~~~~~~~   79 (149)
T 2mys_C            4 KAAADDFKEAFLLFDRTGDAKITASQVGDIARA-LGQNPTNAEINKILGNPSKEEM---NAAAITFEEFLPMLQAAANNK   79 (149)
T ss_pred             HHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH-hCCCCCHHHHHHHHHHhhhccc---cCCcCcHHHHHHHHHHHhccC
Confidence            445667888899999999999999999765433 4666677776666655511122   224599999988766331000


Q ss_pred             CccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCChhHHhhhhccCCCCCCC
Q 006490          272 RLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWD  351 (643)
Q Consensus       272 ~~~~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~p~~  351 (643)
                                                             .......++.+|+.||.|++|.++.+|+..++..... +..
T Consensus        80 ---------------------------------------~~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~-~~~  119 (149)
T 2mys_C           80 ---------------------------------------DQGTFEDFVEGLRVFDKEGNGTVMGAELRHVLATLGE-KMT  119 (149)
T ss_pred             ---------------------------------------CcchHHHHHHHHHHhCCCCCceEcHHHHHHHHHHhCC-CCC
Confidence                                                   0112456788999999999999999999999886522 211


Q ss_pred             ---CCCCCCCccccCCcccchhhhhhhh
Q 006490          352 ---EAPYKDAAETTALGNLTLKGFVSKW  376 (643)
Q Consensus       352 ---~~~~~~~~~~~~~~~~~~~~~~~~w  376 (643)
                         ....... ..+.+|.|+...|+..+
T Consensus       120 ~~~~~~~~~~-d~~~dg~i~~~eF~~~~  146 (149)
T 2mys_C          120 EEEVEELMKG-QEDSNGCINYEAFVKHI  146 (149)
T ss_pred             HHHHHHHHhh-CCCCCCcEeHHHHHHHH
Confidence               1111222 45667778887776653

>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP; 2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A 2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A* 1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A* 3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...

Probab=96.56  E-value=0.0047  Score=54.96  Aligned_cols=145  Identities=17%  Similarity=0.243  Sum_probs=96.1

Q ss_pred             cccchHHHHHHHHhhhhhcCCCC-CCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhccCCcCCCCcChhhHHHHHH
Q 006490          187 EQTLKPRCVRALKRIFIICDHDM-DGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHA  265 (643)
Q Consensus       187 ~~~~~~~~~~~l~~~~~~~~~~~-~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~  265 (643)
                      .....+.....+.+.|...|.+. ++.++.+|+...... .+...+..++..+...+..   +  .+..++++.|+.+..
T Consensus         9 ~~~l~~~~~~~l~~~F~~~D~~~~~G~i~~~e~~~~l~~-~~~~~~~~~~~~~~~~~D~---~--~~g~i~~~eF~~~~~   82 (161)
T 1dtl_A            9 VEQLTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRM-LGQNPTPEELQEMIDEVDE---D--GSGTVDFDEFLVMMV   82 (161)
T ss_dssp             GGGSCHHHHHHHHHHHHHHTTTCGGGSBCHHHHHHHHHH-TTCCCCHHHHHHHHHHHCT---T--SSSSBCHHHHHHHHH
T ss_pred             HhhCCHHHHHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH-cCCCCCHHHHHHHHHHhCC---C--CCCeEcHHHHHHHHH
Confidence            33455666778999999999999 999999999766544 4566777776665554432   2  234599999998876


Q ss_pred             HHHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCChhHHhhhhccC
Q 006490          266 LFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTA  345 (643)
Q Consensus       266 ~~~~~~~~~~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~~~~~  345 (643)
                      ......                                      ........+..+|+.+|.|++|.++.+|+..++...
T Consensus        83 ~~~~~~--------------------------------------~~~~~~~~~~~~F~~~D~d~~G~i~~~El~~~l~~~  124 (161)
T 1dtl_A           83 RSMKDD--------------------------------------SKGKSEEELSDLFRMFDKNADGYIDLEELKIMLQAT  124 (161)
T ss_dssp             HHHC-------------------------------------------CHHHHHHHHHHHHCTTCSSEEEHHHHGGGGTTC
T ss_pred             HHhccc--------------------------------------ccchHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHh
Confidence            543100                                      011234567889999999999999999999998765


Q ss_pred             CCCCCC---CCCCCCCccccCCcccchhhhhhhh
Q 006490          346 PESPWD---EAPYKDAAETTALGNLTLKGFVSKW  376 (643)
Q Consensus       346 ~~~p~~---~~~~~~~~~~~~~~~~~~~~~~~~w  376 (643)
                      . .+..   ..........+.+|.|+...|+..+
T Consensus       125 g-~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~  157 (161)
T 1dtl_A          125 G-ETITEDDIEELMKDGDKNNDGRIDYDEFLEFM  157 (161)
T ss_dssp             ---CCCHHHHHHHHHHHCTTSSSEEEHHHHHHHH
T ss_pred             C-CCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHH
Confidence            2 1111   1111122334677788887776654

>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1; calmodulin-like domain, EF calcium binding protein, transferase; 2.00A {Arabidopsis thaliana}

Probab=96.55  E-value=0.012  Score=52.60  Aligned_cols=138  Identities=20%  Similarity=0.246  Sum_probs=90.7

Q ss_pred             HHHHHHHHhhhhhcCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhccCCcCCCCcChhhHHHHHHHHHHcC
Q 006490          192 PRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKG  271 (643)
Q Consensus       192 ~~~~~~l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~  271 (643)
                      +.....+.++|...|.+.++.++..|+...... .+..+...++..+...+.   .+  .+..++++.|+.+.....   
T Consensus        23 ~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~-~~~~~~~~~~~~~~~~~d---~~--~~g~i~~~ef~~~~~~~~---   93 (166)
T 2aao_A           23 EEEIAGLKEMFNMIDADKSGQITFEELKAGLKR-VGANLKESEILDLMQAAD---VD--NSGTIDYKEFIAATLHLN---   93 (166)
T ss_dssp             HHHHHHHHHHHHHHCTTCCSSBCHHHHHHHGGG-GTCCCCHHHHHHHHHHHC---TT--CCSSBCHHHHHHHHTTCH---
T ss_pred             HHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHH-hCCCCCHHHHHHHHHHhC---CC--CCCeEcHHHHHHHHHHHh---
Confidence            445667888999999999999999999776554 466677766665554442   22  133489999987743110   


Q ss_pred             CccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCChhHHhhhhccCCCCCCC
Q 006490          272 RLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWD  351 (643)
Q Consensus       272 ~~~~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~p~~  351 (643)
                                                             .......+..+|+.+|.|++|.++.+|+..++....-.+..
T Consensus        94 ---------------------------------------~~~~~~~~~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~  134 (166)
T 2aao_A           94 ---------------------------------------KIEREDHLFAAFTYFDKDGSGYITPDELQQACEEFGVEDVR  134 (166)
T ss_dssp             ---------------------------------------HHHTTHHHHHHHHHHCTTCSSSBCHHHHHHHTCC-------
T ss_pred             ---------------------------------------hcccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCCHHH
Confidence                                                   00112457889999999999999999999998865322222


Q ss_pred             CCCCCCCccccCCcccchhhhhhhhh
Q 006490          352 EAPYKDAAETTALGNLTLKGFVSKWA  377 (643)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~w~  377 (643)
                      ..........+.+|.|+...|...+.
T Consensus       135 ~~~~~~~~d~~~dg~i~~~eF~~~~~  160 (166)
T 2aao_A          135 IEELMRDVDQDNDGRIDYNEFVAMMQ  160 (166)
T ss_dssp             -CCHHHHHCTTCSSSBCHHHHHHHHC
T ss_pred             HHHHHHHhCCCCCCcEeHHHHHHHHH
Confidence            22222334557778888888877654

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=96.54  E-value=0.00035  Score=74.90  Aligned_cols=112  Identities=11%  Similarity=0.008  Sum_probs=63.4

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-eeeCCcccCCceeEEEEeCCCCCc--chhhh--------HH
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLE--NKGKL--------NE   78 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~--~~~~~--------~~   78 (643)
                      ...++|+++|.||+||||+.++|...-.....+...-. ...............+||+.|.+.  ....+        ..
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~  116 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRK  116 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            34578999999999999999999764211111110000 000011112223446788888521  12221        34


Q ss_pred             hhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecc
Q 006490           79 ELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKL  125 (643)
Q Consensus        79 ~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~  125 (643)
                      ++..+++.++|+|.++. +.+... .|...+++.  ..+++.+-..+
T Consensus       117 ~l~~~~G~~vV~D~tn~-~~~~R~-~~~~~~~~~--~~~vv~l~~~~  159 (469)
T 1bif_A          117 FLSEEGGHVAVFDATNT-TRERRA-MIFNFGEQN--GYKTFFVESIC  159 (469)
T ss_dssp             HHHTTCCSEEEEESCCC-SHHHHH-HHHHHHHHH--TCEEEEEEECC
T ss_pred             HHHhCCCCEEEEeCCCC-CHHHHH-HHHHHHHhc--CCcEEEEEEEC
Confidence            56667889999999887 344433 577777766  45565554433

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=96.52  E-value=0.0079  Score=63.60  Aligned_cols=26  Identities=27%  Similarity=0.479  Sum_probs=22.1

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhc
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAAT   34 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~   34 (643)
                      ....-.|+|+|.+|||||||++.|.+
T Consensus       290 i~~GeVI~LVGpNGSGKTTLl~~LAg  315 (503)
T 2yhs_A          290 GKAPFVILMVGVNGVGKTTTIGKLAR  315 (503)
T ss_dssp             SCTTEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCcccHHHHHHHHHH
Confidence            34556799999999999999999875

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=96.51  E-value=0.0036  Score=65.77  Aligned_cols=26  Identities=27%  Similarity=0.363  Sum_probs=22.7

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcC
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLER  446 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~  446 (643)
                      ....-|+|+|++++|||+|+|+|++.
T Consensus        65 ~~v~vVsV~G~~~~GKStLLN~llg~   90 (447)
T 3q5d_A           65 KEVVAVSVAGAFRKGKSFLMDFMLRY   90 (447)
T ss_dssp             SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CceEEEEEECCCCCcHHHHHHHHhhh
Confidence            34567999999999999999999964

>3akb_A Putative calcium binding protein; EF-hand, metal binding protein; 1.50A {Streptomyces coelicolor} PDB: 3aka_A

Probab=96.50  E-value=0.0031  Score=56.41  Aligned_cols=143  Identities=20%  Similarity=0.227  Sum_probs=92.5

Q ss_pred             HHHHhhhhhcCCCCCCCCChHHHHHHh---hhhcCCCCCHHHHHHHH--------HHHHhhccCCcCCCCcChhhHHHHH
Q 006490          196 RALKRIFIICDHDMDGALNDAELNEFQ---VKCFNAPLQPAEIVGVK--------RVVQEKQHDGVNDLGLTLSGFLFLH  264 (643)
Q Consensus       196 ~~l~~~~~~~~~~~~~~l~~~el~~~~---~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~f~~~~  264 (643)
                      +.++++|...|.+.++.++..|+....   ....+...+..++..+.        ..+...-.++  +..|+++.|+.+.
T Consensus         4 ~~l~~~F~~~D~d~dG~i~~~E~~~~l~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~f~~~D~d~--~g~i~~~ef~~~~   81 (166)
T 3akb_A            4 RRIAARFTTFDQDGNGHIDRSDFSGAAKAMLAEFGVAARSDRGQALYGGAEALWQGLAGIADRDG--DQRITREEFVTGA   81 (166)
T ss_dssp             HHHHHHHHHHCTTCSSEECHHHHHHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHHHHCTTS--SSCEEHHHHHHTH
T ss_pred             HHHHHHHhHHcCCCCCCcCHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCC--CCcCcHHHHHHHH
Confidence            457888999999999999999997764   34567778888887765        3344443322  3349999998876


Q ss_pred             HHHHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCChhHHhhhhcc
Q 006490          265 ALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLT  344 (643)
Q Consensus       265 ~~~~~~~~~~~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~~~~  344 (643)
                      .........                                   .+...-...+..+|+.+|.|++|.++.+|+..++..
T Consensus        82 ~~~~~~~~~-----------------------------------~~~~~~~~~~~~~F~~~D~d~~G~i~~~E~~~~l~~  126 (166)
T 3akb_A           82 VKRLRDKPD-----------------------------------RFAEMARPFLHAALGVADTDGDGAVTVADTARALTA  126 (166)
T ss_dssp             HHHHHHSHH-----------------------------------HHHHHHHHHHHHHHHHHCSSSSSCCBHHHHHHHHHH
T ss_pred             HHHhccCcc-----------------------------------chHHHHHHHHHHHHHHhCCCCCCcCCHHHHHHHHHH
Confidence            644311100                                   011122445888999999999999999999888876


Q ss_pred             CCCCC-CCCCCCCCCccccCCcccchhhhhhhh
Q 006490          345 APESP-WDEAPYKDAAETTALGNLTLKGFVSKW  376 (643)
Q Consensus       345 ~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~w  376 (643)
                      .. .+ ............+.+|.|+...|....
T Consensus       127 ~~-~~~~~~~~~~~~~D~d~dg~i~~~ef~~~~  158 (166)
T 3akb_A          127 FG-VPEDLARQAAAALDTDGDGKVGETEIVPAF  158 (166)
T ss_dssp             TT-CCHHHHHHHHHHHCTTCSSBCCHHHHHHHH
T ss_pred             hC-CCHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence            53 11 011111122344677788877776554

>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma lanceolatum} SCOP: a.39.1.5

Probab=96.43  E-value=0.015  Score=52.92  Aligned_cols=150  Identities=13%  Similarity=0.154  Sum_probs=96.9

Q ss_pred             HHHHHHHHhhhhhc-CCCCCCCCChHHHHHHhhhhc---CCCCCHHHHHHHHHH--------HHhhccCCcCCCCcChhh
Q 006490          192 PRCVRALKRIFIIC-DHDMDGALNDAELNEFQVKCF---NAPLQPAEIVGVKRV--------VQEKQHDGVNDLGLTLSG  259 (643)
Q Consensus       192 ~~~~~~l~~~~~~~-~~~~~~~l~~~el~~~~~~~~---~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~  259 (643)
                      +...+.++++|... |.+.++.++.+|+........   +......+++.+...        +...-.++  +..|+.+.
T Consensus         4 ~~~~~~l~~~F~~~~D~d~dG~i~~~E~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~f~~~D~d~--dG~I~~~E   81 (185)
T 2sas_A            4 DFQKQKIKFTFDFFLDMNHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDEWRDLKGRADINK--DDVVSWEE   81 (185)
T ss_dssp             HHHHHHHHHHHHHHTCTTCSSEECHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHHCTTC--SSCEEHHH
T ss_pred             HHHHHHHHHHHHHheeCCCCCeEcHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCC--CCeEcHHH
Confidence            44566788999999 999999999999976554432   246667777766533        33332222  33499999


Q ss_pred             HHHHHHHHHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCChhHHh
Q 006490          260 FLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELE  339 (643)
Q Consensus       260 f~~~~~~~~~~~~~~~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~  339 (643)
                      |+.+..........                       +          ..........+..+|+.+|.|++|.|+.+|+.
T Consensus        82 f~~~~~~~~~~~~~-----------------------~----------~~~~~~~~~~~~~~F~~~D~d~dG~Is~~E~~  128 (185)
T 2sas_A           82 YLAMWEKTIATCKS-----------------------V----------ADLPAWCQNRIPFLFKGMDVSGDGIVDLEEFQ  128 (185)
T ss_dssp             HHHHHHHHHHTCCS-----------------------G----------GGSCTTHHHHHHHHHHHHCTTSSSCCCHHHHH
T ss_pred             HHHHHHHHhccccc-----------------------h----------hhhhHHHHHHHHHHHHHHcCCCCCeEcHHHHH
Confidence            99887654422100                       0          00012234678999999999999999999999


Q ss_pred             hhhccCCCCC-CCCCCCCCCccccCCcccchhhhhhhhh
Q 006490          340 DLFLTAPESP-WDEAPYKDAAETTALGNLTLKGFVSKWA  377 (643)
Q Consensus       340 ~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~w~  377 (643)
                      .++.... .| ............+.+|.|+...|.....
T Consensus       129 ~~l~~~g-~~~~~~~~~~~~~D~d~dG~i~~~ef~~~~~  166 (185)
T 2sas_A          129 NYCKNFQ-LQCADVPAVYNVITDGGKVTFDLNRYKELYY  166 (185)
T ss_dssp             HHTTSSC-CCCSSHHHHHHHHHTTTTSCCSHHHHHHHHH
T ss_pred             HHHHHhC-CCHHHHHHHHHHhcCCCCCcCcHHHHHHHHH
Confidence            9987643 22 1111222234457788888877766543

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=96.41  E-value=0.011  Score=62.10  Aligned_cols=130  Identities=17%  Similarity=0.159  Sum_probs=69.3

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHh-------cCCCCCC----CCCCc-------ccceEEEEEEc-----------------
Q 006490          423 VFRCLLFGPQNAGKSALLNSFL-------ERPFSEN----YAPTT-------GEQYAVNVVDQ-----------------  467 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~-------~~~~~~~----~~~t~-------~~~~~~~~v~~-----------------  467 (643)
                      +..|+++|.+||||||++..|.       |......    +.+..       .....+.++..                 
T Consensus       100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~~  179 (433)
T 2xxa_A          100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEA  179 (433)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHHH
Confidence            4578899999999999999997       3332211    11110       00000111110                 


Q ss_pred             CCCcEEEEEEecCCchhhh-hhh---ccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCc-EEEEEeC
Q 006490          468 PGGNKKTLILQEIPEEGVK-KIL---SNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVP-CLLIASK  542 (643)
Q Consensus       468 ~g~~~~~~i~d~~g~~~~~-~~~---~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~p-vilv~NK  542 (643)
                      ......++++||+|..... .+.   .....+..+|.+++|+|+..+..   .......+..       ..+ .-+|+||
T Consensus       180 ~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~---~~~~~~~f~~-------~l~i~gvVlnK  249 (433)
T 2xxa_A          180 KLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQD---AANTAKAFNE-------ALPLTGVVLTK  249 (433)
T ss_dssp             HHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTT---HHHHHHHHHH-------HSCCCCEEEEC
T ss_pred             HhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHH---HHHHHHHHhc-------cCCCeEEEEec
Confidence            0023467889999853321 111   11233457899999999986532   2222233322       234 2468899


Q ss_pred             CCCCCccccHHHHHHHHHHhCCC
Q 006490          543 DDLKPYTMAVQDSARVTQELGIE  565 (643)
Q Consensus       543 ~Dl~~~~~~~~~~~~~~~~~~~~  565 (643)
                      +|.....   ..+..+....+.+
T Consensus       250 ~D~~~~~---g~~l~i~~~~~~P  269 (433)
T 2xxa_A          250 VDGDARG---GAALSIRHITGKP  269 (433)
T ss_dssp             TTSSSCC---THHHHHHHHHCCC
T ss_pred             CCCCccH---HHHHHHHHHHCCC
Confidence            9975432   2333556666654

>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia}

Probab=96.38  E-value=0.0028  Score=59.02  Aligned_cols=135  Identities=15%  Similarity=0.185  Sum_probs=91.9

Q ss_pred             chHHHHHHHHhhhhhcCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhccCCcCCCCcChhhHHHHHHHHHH
Q 006490          190 LKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIE  269 (643)
Q Consensus       190 ~~~~~~~~l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~  269 (643)
                      ..+.....+.++|...|.+.+|.++..|+...... ++..++..++..+...+         +..|+++.|+.+..... 
T Consensus        51 ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~-lg~~~~~~~~~~l~~~~---------~g~i~~~eF~~~~~~~~-  119 (196)
T 3dtp_E           51 FTQHQVQEFKEAFQLIDQDKDGFISKNDIRATFDS-LGRLCTEQELDSMVAEA---------PGPINFTMFLTIFGDRI-  119 (196)
T ss_dssp             SCTTTHHHHHHHHHHHCCSCSSBCCHHHHHHHHHT-TSCCCCHHHHHHHHTTS---------SSCCBHHHHHHHHHHCC-
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHH-hCCCCCHHHHHHHHHHc---------cCCCcHHHHHHHHHHHh-
Confidence            33445667889999999999999999999766543 45667776665554432         45699999998864211 


Q ss_pred             cCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCChhHHhhhhccCCCCC
Q 006490          270 KGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESP  349 (643)
Q Consensus       270 ~~~~~~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~p  349 (643)
                        .                                      .......+..+|+.||.|++|.|+..|+..++ .. +.+
T Consensus       120 --~--------------------------------------~~~~~~~l~~~F~~~D~d~~G~Is~~El~~~l-~~-g~~  157 (196)
T 3dtp_E          120 --A--------------------------------------GTDEEDVIVNAFNLFDEGDGKCKEETLKRSLT-TW-GEK  157 (196)
T ss_dssp             --C--------------------------------------SSCCHHHHHHHHHTTCSSSSCCBHHHHHHHHH-HS-SSC
T ss_pred             --c--------------------------------------CCCcHHHHHHHHHHHCCCCCCcCcHHHHHHHH-Hc-CCC
Confidence              0                                      00113567889999999999999999999999 44 222


Q ss_pred             CC---CCCCCCCccccCCcccchhhhhhhhh
Q 006490          350 WD---EAPYKDAAETTALGNLTLKGFVSKWA  377 (643)
Q Consensus       350 ~~---~~~~~~~~~~~~~~~~~~~~~~~~w~  377 (643)
                      ..   ...+......+.+|.|+...|+....
T Consensus       158 ~~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~  188 (196)
T 3dtp_E          158 FSQDEVDQALSEAPIDGNGLIDIKKFAQILT  188 (196)
T ss_dssp             CCHHHHHHHHHSSCEETTEECHHHHHHHHHS
T ss_pred             CCHHHHHHHHHHcCCCCCCEEeHHHHHHHHH
Confidence            21   11222334456778888887776543

>2bl0_C Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}

Probab=96.38  E-value=0.0033  Score=54.64  Aligned_cols=134  Identities=19%  Similarity=0.319  Sum_probs=89.7

Q ss_pred             HHHHHHhhhhhcCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhccCCcCCCCcChhhHHHHHHHHHHcCCc
Q 006490          194 CVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRL  273 (643)
Q Consensus       194 ~~~~l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~  273 (643)
                      ....++++|...|.+.++.++..|+...... .+...+..++..+...+..   +  .+..++++.|+.+.......   
T Consensus         4 ~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~-~~~~~~~~~~~~l~~~~d~---~--~~g~i~~~eF~~~~~~~~~~---   74 (142)
T 2bl0_C            4 QVSEFKEAFELFDSERTGFITKEGLQTVLKQ-FGVRVEPAAFNEMFNEADA---T--GNGKIQFPEFLSMMGRRMKQ---   74 (142)
T ss_dssp             HHHHHHHHHHHHCTTCSSEEEHHHHHHHHHH-HTCCCCHHHHHHHHHHHCT---T--CSSEEEHHHHHHHHHHHHTT---
T ss_pred             HHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH-hCCCCCHHHHHHHHHHhCc---C--CCCeeeHHHHHHHHHHHhcC---
Confidence            4556888899999999999999999766544 4667777766665544422   2  13349999999886643210   


Q ss_pred             cchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCChhHHhhhhccCCCCCCC--
Q 006490          274 ETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWD--  351 (643)
Q Consensus       274 ~~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~p~~--  351 (643)
                                                            ......++.+|+.+|.|++|.++.+|+..++.... .+..  
T Consensus        75 --------------------------------------~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g-~~~~~~  115 (142)
T 2bl0_C           75 --------------------------------------TTSEDILRQAFRTFDPEGTGYIPKAALQDALLNLG-DRLKPH  115 (142)
T ss_dssp             --------------------------------------CCCHHHHHHHHHHTCCSSCSCEEHHHHHHHHHHSS-SCCCHH
T ss_pred             --------------------------------------CChHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcC-CCCCHH
Confidence                                                  01235688899999999999999999999987652 1111  


Q ss_pred             -CCCCCCCccccCCcccchhhhhhhh
Q 006490          352 -EAPYKDAAETTALGNLTLKGFVSKW  376 (643)
Q Consensus       352 -~~~~~~~~~~~~~~~~~~~~~~~~w  376 (643)
                       ......... +.+|.|+...|+..+
T Consensus       116 ~~~~~~~~~d-~~dg~i~~~eF~~~~  140 (142)
T 2bl0_C          116 EFAEFLGITE-TEKGQIRYDNFINTM  140 (142)
T ss_dssp             HHHHHHHHHC-CSSSEECSHHHHTTT
T ss_pred             HHHHHHHHhC-CCCCcEeHHHHHHHH
Confidence             111112233 667777777776543

>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB: 3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A

Probab=96.37  E-value=0.0052  Score=53.73  Aligned_cols=135  Identities=16%  Similarity=0.195  Sum_probs=89.0

Q ss_pred             HHHHHHhhhhhcCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhccCCcCCCCcChhhHHHHHHHHHHcCCc
Q 006490          194 CVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRL  273 (643)
Q Consensus       194 ~~~~l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~  273 (643)
                      ....++++|...|.+.+|.++..|+...... .+...+..++..+...+.   .+  .+..++++.|+.++.....    
T Consensus         4 ~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~-~g~~~~~~~~~~~~~~~d---~~--~~g~i~~~eF~~~~~~~~~----   73 (143)
T 2obh_A            4 QKQEIREAFDLFDADGTGTIDVKELKVAMRA-LGFEPKKEEIKKMISEID---KE--GTGKMNFGDFLTVMTQKMS----   73 (143)
T ss_dssp             HHHHHHHHHHTTCTTCCSEEEGGGHHHHHHH-TTCCCCHHHHHHHHHHHT---TT--CCSEEEHHHHHHHHHHHHH----
T ss_pred             HHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH-cCCCCCHHHHHHHHHHhC---CC--CCCeeeHHHHHHHHHHHhc----
Confidence            4566888999999999999999999765543 456677777666554432   22  1334999999987553220    


Q ss_pred             cchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCChhHHhhhhccCC-CCC-CC
Q 006490          274 ETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAP-ESP-WD  351 (643)
Q Consensus       274 ~~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~~~~~~-~~p-~~  351 (643)
                                                           ......-++.+|+.||.|++|.++..|+..++.... ..+ ..
T Consensus        74 -------------------------------------~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~  116 (143)
T 2obh_A           74 -------------------------------------EKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDEE  116 (143)
T ss_dssp             -------------------------------------HHHHHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHTTCCCCHHH
T ss_pred             -------------------------------------cccHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHH
Confidence                                                 011234578899999999999999999999887542 111 11


Q ss_pred             CCCCCCCccccCCcccchhhhhhh
Q 006490          352 EAPYKDAAETTALGNLTLKGFVSK  375 (643)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~  375 (643)
                      ..........+.+|.|+...|+..
T Consensus       117 ~~~~~~~~D~d~dG~I~~~eF~~~  140 (143)
T 2obh_A          117 LQEMIDEADRDGDGEVSEQEFLRI  140 (143)
T ss_dssp             HHHHHHHHCTTSSSSBCHHHHHHH
T ss_pred             HHHHHHHhCCCCCCcEeHHHHHHH
Confidence            111112234567788888777654

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=96.36  E-value=0.0049  Score=57.63  Aligned_cols=67  Identities=12%  Similarity=-0.024  Sum_probs=49.3

Q ss_pred             CceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhc---CCCCcEEEEEecccCC
Q 006490           57 DRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRL---EIKVPIIVAGCKLDLR  128 (643)
Q Consensus        57 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~---~~~~pvilv~NK~D~~  128 (643)
                      ..+.+.|+|||+..  .......+..+|.+|+++..+...  ..+. .+.+.++..   .++.++.+|.|++|..
T Consensus        74 ~~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~-~~~~~l~~~~~~~~~~~~~vv~N~~~~~  143 (206)
T 4dzz_A           74 ADYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAA-GSVVTVLEAQAYSRKVEARFLITRKIEM  143 (206)
T ss_dssp             TTSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHH-HHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred             CCCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHH-HHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence            45789999999855  345567788899999999875544  5554 466777654   3467889999999954

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=96.36  E-value=0.015  Score=58.07  Aligned_cols=63  Identities=14%  Similarity=0.003  Sum_probs=37.4

Q ss_pred             ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEee
Q 006490          496 ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVS  571 (643)
Q Consensus       496 ~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vS  571 (643)
                      ..++.++++.|++....   +...+..+.+..     +. .++++||.|.....   ..+-.+...++.+ +.+++
T Consensus       219 ~~P~~~lLvLDa~t~~~---~~~~~~~~~~~~-----~~-t~iivTh~d~~a~g---g~~l~i~~~~~~p-i~~ig  281 (304)
T 1rj9_A          219 EEPKEVWLVLDAVTGQN---GLEQAKKFHEAV-----GL-TGVIVTKLDGTAKG---GVLIPIVRTLKVP-IKFVG  281 (304)
T ss_dssp             TCCSEEEEEEETTBCTH---HHHHHHHHHHHH-----CC-SEEEEECTTSSCCC---TTHHHHHHHHCCC-EEEEE
T ss_pred             CCCCeEEEEEcHHHHHH---HHHHHHHHHHHc-----CC-cEEEEECCcccccc---cHHHHHHHHHCCC-eEEEe
Confidence            45788899999876532   333344443321     33 45678999865432   2344566777776 66665

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=96.33  E-value=0.00056  Score=73.29  Aligned_cols=112  Identities=14%  Similarity=0.083  Sum_probs=61.0

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhh--------hccH
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKI--------LSNK  492 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~--------~~~~  492 (643)
                      ..+++|+++|.||+||||+.++|........ .++.............|......+||..|++.+...        ....
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~-~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~  115 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIG-VPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR  115 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHTT-CCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHhccC-CCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence            3457899999999999999999976422110 011100000000001111112235777776332111        1124


Q ss_pred             HhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEE
Q 006490          493 EALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIA  540 (643)
Q Consensus       493 ~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~  540 (643)
                      .++..+++.++|+|+++. +++....|...+.+.      +.+++++-
T Consensus       116 ~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~------~~~vv~l~  156 (469)
T 1bif_A          116 KFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN------GYKTFFVE  156 (469)
T ss_dssp             HHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH------TCEEEEEE
T ss_pred             HHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc------CCcEEEEE
Confidence            556667888999999987 446666676666554      45555544

>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}

Probab=96.31  E-value=0.0018  Score=66.52  Aligned_cols=143  Identities=21%  Similarity=0.316  Sum_probs=95.5

Q ss_pred             cccccchHHHHHHHHhhhhhcCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhccCCcCCCCcChhhHHHHH
Q 006490          185 HDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLH  264 (643)
Q Consensus       185 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~  264 (643)
                      .......++-...++++|...|.+.++.++..|+..... .++..++..+++.+.+.+..   +  .+..|+++.|+.+.
T Consensus       291 Ps~E~Lt~EEI~ELREaF~~fDkDgdG~IS~eELk~aLr-sLG~~~TeeEI~~Lf~~~D~---D--gDG~IdFeEFl~lm  364 (440)
T 3u0k_A          291 PTRDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMR-SLGQNPTEAELQDMINEVDA---D--GDGTIDFPEFLIMM  364 (440)
T ss_dssp             CBCBCCCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHH-HTTCCCCHHHHHHHHHHHCS---S--CSSSEEHHHHHHHH
T ss_pred             hhHhhhhHHHHHHHHHHHHHHcCCCCCEECHHHHHHHHH-HcCCCCCHHHHHHHHHHhCC---C--CCCcCcHHHHHHHH
Confidence            444556778888999999999999999999999977654 35777888887776655532   1  13358999998775


Q ss_pred             HHHHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCChhHHhhhhcc
Q 006490          265 ALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLT  344 (643)
Q Consensus       265 ~~~~~~~~~~~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~~~~  344 (643)
                      ....   ..                                      ....+-++.+|+.||.|++|.|+.+|+..++..
T Consensus       365 s~~l---k~--------------------------------------~d~eeeLreAFk~fDkDgdG~IS~eELr~vL~~  403 (440)
T 3u0k_A          365 ARKM---KD--------------------------------------TDSEEEIREAFRVFDKDGNGYISAAELRHVMTN  403 (440)
T ss_dssp             HTC-----------------------------------------------CHHHHHHHHHHCTTCSSEECHHHHHHHHHH
T ss_pred             HHHh---cC--------------------------------------CChHHHHHHHHHHHCCCCcCcCCHHHHHHHHHH
Confidence            4110   00                                      001235778999999999999999999988875


Q ss_pred             CC-CCC-CCCCCCCCCccccCCcccchhhhhh
Q 006490          345 AP-ESP-WDEAPYKDAAETTALGNLTLKGFVS  374 (643)
Q Consensus       345 ~~-~~p-~~~~~~~~~~~~~~~~~~~~~~~~~  374 (643)
                      .- ..+ .....+......+.+|.|+...|+.
T Consensus       404 lGe~LSdeEIdeLfke~D~DgDGkIsyeEFvk  435 (440)
T 3u0k_A          404 LGEKLTDEEVDEMIREADIDGDGQVNYEEFVQ  435 (440)
T ss_dssp             HTCCCCHHHHHHHHHHHCTTCSSSEEHHHHHH
T ss_pred             hCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHH
Confidence            31 111 0011111223456777787777764

>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A

Probab=96.29  E-value=0.0052  Score=53.58  Aligned_cols=137  Identities=20%  Similarity=0.349  Sum_probs=93.6

Q ss_pred             chHHHHHHHHhhhhhcCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhccCCcCCCCcChhhHHHHHHHHHH
Q 006490          190 LKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIE  269 (643)
Q Consensus       190 ~~~~~~~~l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~  269 (643)
                      ..+.....+.++|...|.+.++.++..|+...... .+......++..+...+..   +  .+..++++.|+.+......
T Consensus         5 l~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~-~~~~~~~~~~~~l~~~~d~---~--~~g~i~~~ef~~~~~~~~~   78 (147)
T 4ds7_A            5 LTEEQIAEFKEAFALFDKDNSGSISASELATVMRS-LGLSPSEAEVADLMNEIDV---D--GNHAIEFSEFLALMSRQLK   78 (147)
T ss_dssp             CCHHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHH-TTCCCCHHHHHHHHHHHCT---T--SSSEEEHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHH-hCCCCCHHHHHHHHHHhcc---C--CCCcCcHHHHHHHHHHhcc
Confidence            44566778899999999999999999999766544 5667777777766655522   1  2334999999988653321


Q ss_pred             cCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCChhHHhhhhccCCCCC
Q 006490          270 KGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESP  349 (643)
Q Consensus       270 ~~~~~~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~p  349 (643)
                                                               .......+..+|+.+|.|++|.++.+|+..++..... +
T Consensus        79 -----------------------------------------~~~~~~~~~~~F~~~D~d~~G~i~~~e~~~~l~~~~~-~  116 (147)
T 4ds7_A           79 -----------------------------------------CNDSEQELLEAFKVFDKNGDGLISAAELKHVLTSIGE-K  116 (147)
T ss_dssp             -----------------------------------------THHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTC-C
T ss_pred             -----------------------------------------CCCcHHHHHHHHHHhCCCCCCeECHHHHHHHHHHcCC-C
Confidence                                                     1123456788999999999999999999999986532 2


Q ss_pred             CCC---CCCCCCccccCCcccchhhhhhh
Q 006490          350 WDE---APYKDAAETTALGNLTLKGFVSK  375 (643)
Q Consensus       350 ~~~---~~~~~~~~~~~~~~~~~~~~~~~  375 (643)
                      ...   ........ +..|.|+...|+..
T Consensus       117 ~~~~~~~~~~~~~d-~~dg~i~~~eF~~~  144 (147)
T 4ds7_A          117 LTDAEVDEMLREVS-DGSGEINIKQFAAL  144 (147)
T ss_dssp             CCHHHHHHHHHHHS-SSCSSEEHHHHHHH
T ss_pred             CCHHHHHHHHHHhc-CCCCcCcHHHHHHH
Confidence            111   11112233 66777777777654

>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y 1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y 3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y 2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...

Probab=96.27  E-value=0.0057  Score=54.19  Aligned_cols=134  Identities=16%  Similarity=0.267  Sum_probs=90.6

Q ss_pred             chHHHHHHHHhhhhhcCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhccCCcCCCCcChhhHHHHHHHHHH
Q 006490          190 LKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIE  269 (643)
Q Consensus       190 ~~~~~~~~l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~  269 (643)
                      ..+.....++++|...|.+.++.++..|+...... .+...+..++..+..   .      .+..++++.|+.+......
T Consensus        12 l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~-~g~~~~~~~~~~~~~---~------~~g~i~~~eF~~~~~~~~~   81 (156)
T 1wdc_B           12 LPQKQIQEMKEAFSMIDVDRDGFVSKEDIKAISEQ-LGRAPDDKELTAMLK---E------APGPLNFTMFLSIFSDKLS   81 (156)
T ss_dssp             CCHHHHHHHHHHHHHHCTTCSSSCCHHHHHHHHHH-HSSCCCHHHHHHHHT---T------SSSCCCHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHH-hCCCCCHHHHHHHHH---h------CCCcCcHHHHHHHHHHHhc
Confidence            44556777899999999999999999999766554 356666666655542   1      2456999999988653210


Q ss_pred             cCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCChhHHhhhhccCCCCC
Q 006490          270 KGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESP  349 (643)
Q Consensus       270 ~~~~~~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~p  349 (643)
                      .                                         ......++.+|+.||.|++|.++.+|+..++... +.+
T Consensus        82 ~-----------------------------------------~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~-g~~  119 (156)
T 1wdc_B           82 G-----------------------------------------TDSEETIRNAFAMFDEQETKKLNIEYIKDLLENM-GDN  119 (156)
T ss_dssp             S-----------------------------------------CCCHHHHHHHHHTTCTTCCSCEEHHHHHHHHHHS-SSC
T ss_pred             C-----------------------------------------CChHHHHHHHHHHHCcCCCCccCHHHHHHHHHHh-CCC
Confidence            0                                         0013467889999999999999999999998765 222


Q ss_pred             CCC---CCCCCCccccCCcccchhhhhhhh
Q 006490          350 WDE---APYKDAAETTALGNLTLKGFVSKW  376 (643)
Q Consensus       350 ~~~---~~~~~~~~~~~~~~~~~~~~~~~w  376 (643)
                      ...   ..+......+ +|.|+...|+...
T Consensus       120 ~~~~~~~~~~~~~d~~-dg~i~~~eF~~~~  148 (156)
T 1wdc_B          120 FNKDEMRMTFKEAPVE-GGKFDYVKFTAMI  148 (156)
T ss_dssp             CCHHHHHHHHHHCCEE-TTEECHHHHHHHH
T ss_pred             CCHHHHHHHHHhcCCC-CCEEeHHHHHHHH
Confidence            111   1111223345 7778777776653

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=96.20  E-value=0.036  Score=63.04  Aligned_cols=25  Identities=24%  Similarity=0.411  Sum_probs=21.2

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcC
Q 006490           11 TGVRVVVVGDRGTGKSSLIAAAATE   35 (643)
Q Consensus        11 ~~~kI~lvG~~~vGKSsL~n~l~~~   35 (643)
                      ..-.++|+|+||||||++++.+...
T Consensus       206 ~~~~vlL~G~~GtGKT~la~~la~~  230 (758)
T 1r6b_X          206 RKNNPLLVGESGVGKTAIAEGLAWR  230 (758)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCCeEEEcCCCCCHHHHHHHHHHH
Confidence            3456999999999999999988753

>2lvv_A Flagellar calcium-binding protein TB-24; EF-hand, metal binding protein; NMR {Trypanosoma brucei brucei}

Probab=96.18  E-value=0.0075  Score=57.47  Aligned_cols=145  Identities=13%  Similarity=0.053  Sum_probs=93.6

Q ss_pred             hHHHHHHHHhhhhhcCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhcc---CCcC-CCCcChhhHHHHHHH
Q 006490          191 KPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQH---DGVN-DLGLTLSGFLFLHAL  266 (643)
Q Consensus       191 ~~~~~~~l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~f~~~~~~  266 (643)
                      .+.....++++|...|.+.++.++..|+.....+..+......++..+...+-..+.   ...+ +..|+++.|+.+...
T Consensus        46 s~~~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~~lg~~~~~~~~~~~~~~~f~~~~~~~~D~d~~G~I~~~EF~~~~~~  125 (226)
T 2lvv_A           46 DAESKSRRIELFKQFDTNGTGKLGFREVLDGCYGILKLDEFTTHLPDIVQRAFDKAKDLGNKVKGVGEEDLVEFLEFRLM  125 (226)
T ss_dssp             CHHHHHHHHHHHHHHGGGSCSCBCSHHHHHHHHHTTCCTTTSSSCHHHHHHHHHHHHHHHHHHSCCCCCSCBCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcccCCCCCCCCcCCHHHHHHHHHH
Confidence            345566788899999999999999999987665656666666666555554411110   0012 234899999885321


Q ss_pred             HHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCChhHHhhhhccC-
Q 006490          267 FIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTA-  345 (643)
Q Consensus       267 ~~~~~~~~~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~~~~~-  345 (643)
                      ..                                          .......++.+|+.||.|++|.|+.+|+..++... 
T Consensus       126 ~~------------------------------------------~~~~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~~~  163 (226)
T 2lvv_A          126 LC------------------------------------------YIYDIFELTVMFDTMDKDGSLLLELQEFKEALPKLK  163 (226)
T ss_dssp             HH------------------------------------------HHHHHHHHHHHHHHHSCSSCCEECHHHHHHHHHHHH
T ss_pred             HH------------------------------------------hccCHHHHHHHHHHHcCCCCCeEcHHHHHHHHHHHh
Confidence            11                                          00112467889999999999999999999998653 


Q ss_pred             -CCCCCC-CCCCCCCccccCCcccchhhhhhhhh
Q 006490          346 -PESPWD-EAPYKDAAETTALGNLTLKGFVSKWA  377 (643)
Q Consensus       346 -~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~w~  377 (643)
                       .+.+-. ..........+.+|.|+...|+....
T Consensus       164 ~~g~~~~e~~~~~~~~D~d~dG~Is~~EF~~~~~  197 (226)
T 2lvv_A          164 EWGVDITDATTVFNEIDTNGSGVVTFDEFSCWAV  197 (226)
T ss_dssp             HHTCCCCSCHHHHHHHCCSCSSCEEHHHHHHHHH
T ss_pred             hcCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHH
Confidence             122211 12222234557788898888876643

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=96.18  E-value=0.026  Score=56.32  Aligned_cols=24  Identities=42%  Similarity=0.583  Sum_probs=20.8

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhc
Q 006490           11 TGVRVVVVGDRGTGKSSLIAAAAT   34 (643)
Q Consensus        11 ~~~kI~lvG~~~vGKSsL~n~l~~   34 (643)
                      +.-.|+|+|++|||||||++.|.+
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lag  124 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGR  124 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHH
Confidence            345799999999999999999874

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=96.09  E-value=0.0029  Score=58.73  Aligned_cols=25  Identities=24%  Similarity=0.450  Sum_probs=21.7

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcC
Q 006490           11 TGVRVVVVGDRGTGKSSLIAAAATE   35 (643)
Q Consensus        11 ~~~kI~lvG~~~vGKSsL~n~l~~~   35 (643)
                      +.--|+|+|++|||||||+++|++.
T Consensus        18 ~g~~ivl~GPSGaGKsTL~~~L~~~   42 (197)
T 3ney_A           18 GRKTLVLIGASGVGRSHIKNALLSQ   42 (197)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECcCCCCHHHHHHHHHhh
Confidence            3446999999999999999999865

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=96.04  E-value=0.025  Score=59.75  Aligned_cols=24  Identities=21%  Similarity=0.415  Sum_probs=21.1

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhc
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLE  445 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~  445 (643)
                      .+--++|+|.+|||||||++.|.+
T Consensus       292 ~GeVI~LVGpNGSGKTTLl~~LAg  315 (503)
T 2yhs_A          292 APFVILMVGVNGVGKTTTIGKLAR  315 (503)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCcccHHHHHHHHHH
Confidence            345799999999999999999975

>2bl0_B Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}

Probab=95.97  E-value=0.0074  Score=52.49  Aligned_cols=130  Identities=21%  Similarity=0.281  Sum_probs=88.7

Q ss_pred             HHhhhhhcCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhccCCcCCCCcChhhHHHHHHHHHHcCCccchh
Q 006490          198 LKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTW  277 (643)
Q Consensus       198 l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~w  277 (643)
                      ++++|...|.+.++.++..|+...... .+......++..+...        -.+..++++.|+.+......        
T Consensus         7 l~~~F~~~D~d~~G~i~~~e~~~~l~~-~~~~~~~~~~~~~~~~--------~~~g~i~~~eF~~~~~~~~~--------   69 (145)
T 2bl0_B            7 IQECFQIFDKDNDGKVSIEELGSALRS-LGKNPTNAELNTIKGQ--------LNAKEFDLATFKTVYRKPIK--------   69 (145)
T ss_dssp             HHHHHHHHCTTCSSCEEGGGHHHHHHH-TTCCCCHHHHHHHHHH--------HTSSEECHHHHHHHHTSCCC--------
T ss_pred             HHHHHHHhCCCCcCccCHHHHHHHHHH-hCCCCCHHHHHHHHHh--------cCCCeEcHHHHHHHHHHHhh--------
Confidence            788899999999999999999766554 3566677766665554        11334999999887541000        


Q ss_pred             HHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCChhHHhhhhccCCCCCCC---CCC
Q 006490          278 AVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWD---EAP  354 (643)
Q Consensus       278 ~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~p~~---~~~  354 (643)
                                                      -.......++.+|+.+|.|++|.++.+|+..++..... +..   ...
T Consensus        70 --------------------------------~~~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~~g~-~~~~~~~~~  116 (145)
T 2bl0_B           70 --------------------------------TPTEQSKEMLDAFRALDKEGNGTIQEAELRQLLLNLGD-ALTSSEVEE  116 (145)
T ss_dssp             --------------------------------CGGGGHHHHHHHHHHHCSSSSSEEEHHHHHHHHHHSSS-CCCHHHHHH
T ss_pred             --------------------------------cCcccHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHcCC-CCCHHHHHH
Confidence                                            01234567889999999999999999999999876522 211   111


Q ss_pred             CCCCccccCCcccchhhhhhhhh
Q 006490          355 YKDAAETTALGNLTLKGFVSKWA  377 (643)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~w~  377 (643)
                      .......+.+|.|+...|+..+.
T Consensus       117 ~~~~~d~~~dg~i~~~eF~~~~~  139 (145)
T 2bl0_B          117 LMKEVSVSGDGAINYESFVDMLV  139 (145)
T ss_dssp             HHTTCCCCTTSEEEHHHHHHHHH
T ss_pred             HHHHcCCCCCCcEeHHHHHHHHH
Confidence            22234456778888888776643

>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A {Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A 1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ...

Probab=95.96  E-value=0.011  Score=51.94  Aligned_cols=137  Identities=22%  Similarity=0.320  Sum_probs=89.1

Q ss_pred             hHHHHHHHHhhhhhcCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhccCCcCCCCcChhhHHHHHHHHHHc
Q 006490          191 KPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEK  270 (643)
Q Consensus       191 ~~~~~~~l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~  270 (643)
                      .+.....++..|...|.+.++.++..|+...... .+...+..++..+...+   ..+  .+..++++.|+.+...... 
T Consensus         5 ~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~-~g~~~~~~~~~~l~~~~---d~~--~~g~i~~~eF~~~~~~~~~-   77 (148)
T 1exr_A            5 TEEQIAEFKEAFALFDKDGDGTITTKELGTVMRS-LGQNPTEAELQDMINEV---DAD--GNGTIDFPEFLSLMARKMK-   77 (148)
T ss_dssp             CHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHH-HTCCCCHHHHHHHHHHH---CTT--CSSSEEHHHHHHHHHHHHH-
T ss_pred             CHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHH-cCCCCCHHHHHHHHHHH---CCC--CCCcCcHHHHHHHHHhccc-
Confidence            3445667888899999999999999999766543 45556666665544433   222  1335999999887653221 


Q ss_pred             CCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCChhHHhhhhccCCCCCC
Q 006490          271 GRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPW  350 (643)
Q Consensus       271 ~~~~~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~p~  350 (643)
                                                              ......-+..+|+.||.|++|.++.+|+..++..... +.
T Consensus        78 ----------------------------------------~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~-~~  116 (148)
T 1exr_A           78 ----------------------------------------EQDSEEELIEAFKVFDRDGNGLISAAELRHVMTNLGE-KL  116 (148)
T ss_dssp             ----------------------------------------HHHHHHHHHHHHHHHSTTCSSCBCHHHHHHHHHHTTC-CC
T ss_pred             ----------------------------------------CCCcHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHhCC-CC
Confidence                                                    0122345778999999999999999999998876521 11


Q ss_pred             CC---CCCCCCccccCCcccchhhhhhh
Q 006490          351 DE---APYKDAAETTALGNLTLKGFVSK  375 (643)
Q Consensus       351 ~~---~~~~~~~~~~~~~~~~~~~~~~~  375 (643)
                      ..   .........+.+|.|+...|+..
T Consensus       117 ~~~~~~~~~~~~d~d~dg~i~~~eF~~~  144 (148)
T 1exr_A          117 TDDEVDEMIREADIDGDGHINYEEFVRM  144 (148)
T ss_dssp             CHHHHHHHHHHHCSSSSSSBCHHHHHHH
T ss_pred             CHHHHHHHHHHhCCCCCCcEeHHHHHHH
Confidence            11   11111233466777888777654

>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A

Probab=95.94  E-value=0.0037  Score=55.12  Aligned_cols=137  Identities=20%  Similarity=0.271  Sum_probs=87.8

Q ss_pred             hHHHHHHHHhhhhhcCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhccCCcCCCCcChhhHHHHHHHHHHc
Q 006490          191 KPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEK  270 (643)
Q Consensus       191 ~~~~~~~l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~  270 (643)
                      +++....++.+|...|.+.+|.++..|+..... ..+......++..+...+...     ....++...|+........ 
T Consensus         5 t~eqi~el~~~F~~~D~d~~G~I~~~El~~~l~-~~~~~~~~~~~~~~~~~~d~~-----~~g~i~~~ef~~~~~~~~~-   77 (148)
T 2lmt_A            5 TEEQIAEFKDAFVQFDKEGTGKIATRELGTLMR-TLGQNPTEAELQDLIAEAENN-----NNGQLNFTEFCGIMAKQMR-   77 (148)
T ss_dssp             CSHHHHHHHHHHHHHHCSSCCEEEGGGHHHHHH-HHTCCCCHHHHHHHHHHHHTT-----STTEEEHHHHHHHHHHTTT-
T ss_pred             CHHHHHHHHHHHHHHcCCCCCeECHHHHHHHHH-hcCCCchHHHHHHHHHhcccC-----CCCcccHHHHHHHHHHHhc-
Confidence            344566788999999999999999999976544 345566666666655544322     1234777777766431110 


Q ss_pred             CCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCChhHHhhhhccCC-CCC
Q 006490          271 GRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAP-ESP  349 (643)
Q Consensus       271 ~~~~~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~~~~~~-~~p  349 (643)
                        .                                      .....-++.+|+.||.|++|.++.+|+..++.... ..+
T Consensus        78 --~--------------------------------------~~~~~~l~~aF~~~D~d~~G~I~~~El~~~l~~~g~~~~  117 (148)
T 2lmt_A           78 --E--------------------------------------TDTEEEMREAFKIFDRDGDGFISPAELRFVMINLGEKVT  117 (148)
T ss_dssp             --T--------------------------------------TTTHHHHHHHHHHHHSSCSSEECHHHHHHHHHHHTCCCC
T ss_pred             --c--------------------------------------cCcHHHHHHHHHHHCCCCcCcCcHHHHHHHHHHcCcccc
Confidence              0                                      01124578899999999999999999998887542 111


Q ss_pred             -CCCCCCCCCccccCCcccchhhhhh
Q 006490          350 -WDEAPYKDAAETTALGNLTLKGFVS  374 (643)
Q Consensus       350 -~~~~~~~~~~~~~~~~~~~~~~~~~  374 (643)
                       ............+.+|.|+...|+.
T Consensus       118 ~~e~~~l~~~~D~d~dG~I~~~EF~~  143 (148)
T 2lmt_A          118 DEEIDEMIREADFDGDGMINYEEFVW  143 (148)
T ss_dssp             HHHHHHHHHHHCCSCCSSEEHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCCeEeHHHHHH
Confidence             1111112224457778888877765

>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B

Probab=95.94  E-value=0.031  Score=49.48  Aligned_cols=135  Identities=20%  Similarity=0.288  Sum_probs=87.6

Q ss_pred             ccchHHHHHHHHhhhhhcCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhccCCcCCCCcChhhHHHHHHHH
Q 006490          188 QTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALF  267 (643)
Q Consensus       188 ~~~~~~~~~~l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~  267 (643)
                      ..++++-...++.+|...|.+++|.++..|+..... ..+...+..++..+..   ..      +..+++..|+.+....
T Consensus         8 ~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~-~lg~~~~~~~~~~~~~---~~------~~~i~f~ef~~~~~~~   77 (153)
T 3i5g_B            8 VKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFS-SLGRVPPDDELNAMLK---EC------PGQLNFTAFLTLFGEK   77 (153)
T ss_dssp             TTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHH-HTTSCCCHHHHHHHHH---TS------SSCCCSHHHHHTTTTT
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHH-HcCCCccHHHHHHHHH---hc------cCCccHHHHHHHHHhh
Confidence            346677778899999999999999999999976654 3566666666655442   11      2347788887763200


Q ss_pred             HHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCChhHHhhhhccCCC
Q 006490          268 IEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPE  347 (643)
Q Consensus       268 ~~~~~~~~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~  347 (643)
                      .                            .     ..        ....-++..|+.||.|++|.++.+|+..++.... 
T Consensus        78 ~----------------------------~-----~~--------~~~~~l~~aF~~fD~d~~G~I~~~el~~~l~~~g-  115 (153)
T 3i5g_B           78 V----------------------------S-----GT--------DPEDALRNAFSMFDEDGQGFIPEDYLKDLLENMG-  115 (153)
T ss_dssp             T----------------------------T-----TC--------CCHHHHHHHHHTTCSSCSSCCCHHHHHHHHHSSS-
T ss_pred             h----------------------------c-----cc--------ccHHHHHHHHhccccCCCCeEeHHHHHHHHHHcC-
Confidence            0                            0     00        0135688999999999999999999999997652 


Q ss_pred             CCCCC---CCCCCCccccCCcccchhhhhhh
Q 006490          348 SPWDE---APYKDAAETTALGNLTLKGFVSK  375 (643)
Q Consensus       348 ~p~~~---~~~~~~~~~~~~~~~~~~~~~~~  375 (643)
                      .+...   ..+......+ +|.|+...|+..
T Consensus       116 ~~ls~~ei~~~~~~~D~~-dG~I~y~EF~~~  145 (153)
T 3i5g_B          116 DNFSKEEIKNVWKDAPLK-NKQFNYNKMVDI  145 (153)
T ss_dssp             SCCCHHHHHHHHTTCCEE-TTEECHHHHHHH
T ss_pred             CcCCHHHHHHHHHHhCCC-cCEEcHHHHHHH
Confidence            22111   0111122234 567776666543

>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP: a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A 1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A 2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...

Probab=95.91  E-value=0.016  Score=51.40  Aligned_cols=142  Identities=16%  Similarity=0.255  Sum_probs=94.3

Q ss_pred             chHHHHHHHHhhhhhcCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhccCCcCCCCcChhhHHHHHHHHHH
Q 006490          190 LKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIE  269 (643)
Q Consensus       190 ~~~~~~~~l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~  269 (643)
                      ..+.....+.++|...|.+.++.++..|+...... .+...+..++..+...+.   .+  .+..++++.|+.+......
T Consensus        14 ls~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~-~~~~~~~~~~~~~~~~~d---~~--~~g~i~~~ef~~~~~~~~~   87 (162)
T 1top_A           14 LSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRM-LGQNPTKEELDAIIEEVD---ED--GSGTIDFEEFLVMMVRQMK   87 (162)
T ss_dssp             SCHHHHHHHHHHHHTTTCSCSSEEEGGGHHHHHHH-TTCCCCHHHHHHHHHHHC---TT--SCCEEEHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHH-cCCCCCHHHHHHHHHHHc---CC--CCCcEeHHHHHHHHHHHhc
Confidence            44566778899999999999999999998766543 466677777666555442   21  1334999999988664431


Q ss_pred             cCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCChhHHhhhhccCCCCC
Q 006490          270 KGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESP  349 (643)
Q Consensus       270 ~~~~~~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~p  349 (643)
                      ...                                      .......++.+|+.+|.|++|.++.+|+..++.... .+
T Consensus        88 ~~~--------------------------------------~~~~~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~g-~~  128 (162)
T 1top_A           88 EDA--------------------------------------KGKSEEELANCFRIFDKNADGFIDIEELGEILRATG-EH  128 (162)
T ss_dssp             HHH--------------------------------------HHHHHHHHHHHHHHHCTTCSSCBCHHHHHHHHHTTT-CC
T ss_pred             ccc--------------------------------------ccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhC-CC
Confidence            100                                      011355788899999999999999999999987653 11


Q ss_pred             CC---CCCCCCCccccCCcccchhhhhhhh
Q 006490          350 WD---EAPYKDAAETTALGNLTLKGFVSKW  376 (643)
Q Consensus       350 ~~---~~~~~~~~~~~~~~~~~~~~~~~~w  376 (643)
                      ..   ..........+.+|.|+...|+...
T Consensus       129 ~~~~~~~~~~~~~d~~~dg~i~~~eF~~~~  158 (162)
T 1top_A          129 VTEEDIEDLMKDSDKNNDGRIDFDEFLKMM  158 (162)
T ss_dssp             CCHHHHHHHHHHHCTTCSSSBCHHHHHHHH
T ss_pred             CCHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence            11   1111122334667777777776543

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=95.88  E-value=0.072  Score=53.09  Aligned_cols=137  Identities=18%  Similarity=0.147  Sum_probs=71.6

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCC------CCCCCCCCccc-----------ceEEEEEEc-CC---------------
Q 006490          423 VFRCLLFGPQNAGKSALLNSFLERP------FSENYAPTTGE-----------QYAVNVVDQ-PG---------------  469 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~~~~------~~~~~~~t~~~-----------~~~~~~v~~-~g---------------  469 (643)
                      +--|+|+|++|+||||++..|.+.-      .......+.+.           ...+..+.. .+               
T Consensus       104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~a~  183 (306)
T 1vma_A          104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHAL  183 (306)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHHH
Confidence            3468999999999999999987421      11000001100           000111110 00               


Q ss_pred             -CcEEEEEEecCCchhhhh-----hhccHHhh-----ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEE
Q 006490          470 -GNKKTLILQEIPEEGVKK-----ILSNKEAL-----ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLL  538 (643)
Q Consensus       470 -~~~~~~i~d~~g~~~~~~-----~~~~~~~~-----~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvil  538 (643)
                       ....++++||+|......     +.+....+     ..+|.+++|+|++.+   +........+.+..     ++ .-+
T Consensus       184 ~~~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~---~~~l~~a~~~~~~~-----~i-~gv  254 (306)
T 1vma_A          184 ARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG---QNGLVQAKIFKEAV-----NV-TGI  254 (306)
T ss_dssp             HTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH---HHHHHHHHHHHHHS-----CC-CEE
T ss_pred             hcCCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC---HHHHHHHHHHHhcC-----CC-CEE
Confidence             123467899998522111     11111122     248899999999743   22222223333321     22 345


Q ss_pred             EEeCCCCCCccccHHHHHHHHHHhCCCCcEEeee
Q 006490          539 IASKDDLKPYTMAVQDSARVTQELGIEPPIPVSM  572 (643)
Q Consensus       539 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa  572 (643)
                      |+||.|....   -..+.++....+.+ +.+++.
T Consensus       255 VlTk~D~~~~---gG~~l~~~~~~~~P-i~~i~~  284 (306)
T 1vma_A          255 ILTKLDGTAK---GGITLAIARELGIP-IKFIGV  284 (306)
T ss_dssp             EEECGGGCSC---TTHHHHHHHHHCCC-EEEEEC
T ss_pred             EEeCCCCccc---hHHHHHHHHHHCCC-EEEEeC
Confidence            6799996543   22366778888886 666654

>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP, structural genomics, PSI; 1.95A {Leishmania major} SCOP: a.39.1.8

Probab=95.83  E-value=0.018  Score=53.10  Aligned_cols=129  Identities=19%  Similarity=0.227  Sum_probs=89.9

Q ss_pred             HHHHhhhhhcCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhccCCcCCCCcChhhHHHHHHHHHHcCCccc
Q 006490          196 RALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLET  275 (643)
Q Consensus       196 ~~l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~  275 (643)
                      +.++++|...|.+.++.++.+|+.... ...+...+..++..+...+..   +  .+..++++.|+.+...         
T Consensus        27 ~~l~~~F~~~D~d~~G~I~~~El~~~l-~~~~~~~~~~~~~~l~~~~D~---d--~dG~I~~~EF~~~~~~---------   91 (191)
T 1y1x_A           27 QELMEWFRAVDTDGSGAISVPELNAAL-SSAGVPFSLATTEKLLHMYDK---N--HSGEITFDEFKDLHHF---------   91 (191)
T ss_dssp             SCHHHHHHHHCTTCSSSBCHHHHHHHH-CBTTBCCCHHHHHHHHHHHCT---T--CSSSBCHHHHHHHHHH---------
T ss_pred             HHHHHHHHHHcCCCCCcCcHHHHHHHH-HHcCCCCCHHHHHHHHHHhCC---C--CCCeEcHHHHHHHHHH---------
Confidence            357788899999999999999998776 445556777766666554422   2  1335999999887541         


Q ss_pred             hhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCChhHHhhhhccCCC-CC-CCCC
Q 006490          276 TWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPE-SP-WDEA  353 (643)
Q Consensus       276 ~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~-~p-~~~~  353 (643)
                                                             ...++.+|+.+|.|++|.++.+|+..++..... .+ ....
T Consensus        92 ---------------------------------------~~~~~~~F~~~D~d~~G~i~~~e~~~~l~~~g~~~~~~~~~  132 (191)
T 1y1x_A           92 ---------------------------------------ILSMREGFRKRDSSGDGRLDSNEVRAALLSSGYQVSEQTFQ  132 (191)
T ss_dssp             ---------------------------------------HHHHHHHHHHHCTTSSSCBCHHHHHHHHHTTSCCCCHHHHH
T ss_pred             ---------------------------------------HHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhCCCCCHHHHH
Confidence                                                   135678999999999999999999999886522 11 1111


Q ss_pred             CCCCCccccCCcccchhhhhhhhhh
Q 006490          354 PYKDAAETTALGNLTLKGFVSKWAL  378 (643)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~w~~  378 (643)
                      ........+.+|.|+...|+..+..
T Consensus       133 ~~~~~~D~d~dg~i~~~eF~~~~~~  157 (191)
T 1y1x_A          133 ALMRKFDRQRRGSLGFDDYVELSIF  157 (191)
T ss_dssp             HHHHHHCTTCSSSBCHHHHHHHHHH
T ss_pred             HHHHHhCCCCCCeEeHHHHHHHHHH
Confidence            1122344577888999988887653

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=95.81  E-value=0.0054  Score=56.61  Aligned_cols=29  Identities=28%  Similarity=0.422  Sum_probs=23.5

Q ss_pred             CCCCCccEEEEEcCCCCCHHHHHHHHhcC
Q 006490            7 SSSRTGVRVVVVGDRGTGKSSLIAAAATE   35 (643)
Q Consensus         7 ~~~~~~~kI~lvG~~~vGKSsL~n~l~~~   35 (643)
                      ....+.-.|+|+|++|+|||||++.|.+.
T Consensus         4 ~~i~~g~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A            4 TDDLGGNILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             --CCTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             cCCCCCeEEEEECCCCCCHHHHHHHHHhc
Confidence            34455567999999999999999999885

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=95.79  E-value=0.0046  Score=56.58  Aligned_cols=23  Identities=22%  Similarity=0.686  Sum_probs=20.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcC
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATE   35 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~   35 (643)
                      .+++|+|++|+|||||++.+++.
T Consensus         1 ~~i~l~G~nGsGKTTLl~~l~g~   23 (178)
T 1ye8_A            1 MKIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999998864

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=95.66  E-value=0.0032  Score=57.95  Aligned_cols=21  Identities=43%  Similarity=0.692  Sum_probs=19.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 006490           15 VVVVGDRGTGKSSLIAAAATE   35 (643)
Q Consensus        15 I~lvG~~~vGKSsL~n~l~~~   35 (643)
                      |+|+|++|||||||+++|+..
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            899999999999999999865

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=95.65  E-value=0.02  Score=56.87  Aligned_cols=126  Identities=14%  Similarity=0.155  Sum_probs=0.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCC------------------------------------
Q 006490          426 CLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPG------------------------------------  469 (643)
Q Consensus       426 i~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g------------------------------------  469 (643)
                      ++++|++||||||++..|.+.-       ....+..+.+++.+-                                    
T Consensus       108 i~lvG~~GsGKTTl~~~LA~~l-------~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~  180 (296)
T 2px0_A          108 IVLFGSTGAGKTTTLAKLAAIS-------MLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELF  180 (296)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH-------HHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHG
T ss_pred             EEEECCCCCCHHHHHHHHHHHH-------HHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHh


Q ss_pred             CcEEEEEEecCCchhhhh--hhccHHhhc--cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCC
Q 006490          470 GNKKTLILQEIPEEGVKK--ILSNKEALA--SCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDL  545 (643)
Q Consensus       470 ~~~~~~i~d~~g~~~~~~--~~~~~~~~~--~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl  545 (643)
                      ....++++||+|......  +......+.  .++.+++|+|++..  ...+..+...+...      +..-+++ ||.|.
T Consensus       181 ~~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~~l------~~~giVl-tk~D~  251 (296)
T 2px0_A          181 SEYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFSSV------PVNQYIF-TKIDE  251 (296)
T ss_dssp             GGSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTSSS------CCCEEEE-ECTTT
T ss_pred             cCCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHhcC------CCCEEEE-eCCCc


Q ss_pred             CCccccHHHHHHHHHHhCCCCcEEee
Q 006490          546 KPYTMAVQDSARVTQELGIEPPIPVS  571 (643)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~vS  571 (643)
                      .....   .+..+....+.+ +.+++
T Consensus       252 ~~~~g---~~~~~~~~~~~p-i~~i~  273 (296)
T 2px0_A          252 TTSLG---SVFNILAESKIG-VGFMT  273 (296)
T ss_dssp             CSCCH---HHHHHHHTCSCC-CSEEC
T ss_pred             ccchh---HHHHHHHHHCcC-EEEEE

>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A

Probab=95.63  E-value=0.008  Score=53.22  Aligned_cols=142  Identities=15%  Similarity=0.242  Sum_probs=91.5

Q ss_pred             chHHHHHHHHhhhhhcC-CCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhccCCcCCCCcChhhHHHHHHHHH
Q 006490          190 LKPRCVRALKRIFIICD-HDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFI  268 (643)
Q Consensus       190 ~~~~~~~~l~~~~~~~~-~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~  268 (643)
                      ..+.....++++|...| .+.++.++.+|+...... ++...+..++..+...+.   .+  .+..++++.|+.+.....
T Consensus         7 l~~~~~~~l~~~F~~~D~~~~~G~i~~~e~~~~l~~-~~~~~~~~~~~~l~~~~D---~~--~~g~i~~~eF~~~~~~~~   80 (158)
T 2jnf_A            7 LSSNQVKLLETAFRDFETPEGSGRVSTDQIGIILEV-LGIQQTKSTIRQLIDEFD---PF--GNGDIDFDSFKIIGARFL   80 (158)
T ss_dssp             SCHHHHHHHHHHHHHSBCSSSCSSEEHHHHHHHHHH-TTCSCSHHHHHHHHHHHC---TT--CCSEECHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHhCCCCCCCcCcHHHHHHHHHH-hCCCCCHHHHHHHHHHhC---CC--CCCcCcHHHHHHHHHHHh
Confidence            34556677899999999 999999999999766544 466677776666555442   21  133499999998876432


Q ss_pred             HcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCChhHHhhhhccCCCC
Q 006490          269 EKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPES  348 (643)
Q Consensus       269 ~~~~~~~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~  348 (643)
                      .....                       |              ......++.+|+.+|.|++|.++.+|+..++..... 
T Consensus        81 ~~~~~-----------------------~--------------~~~~~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~-  122 (158)
T 2jnf_A           81 GEEVN-----------------------P--------------EQMQQELREAFRLYDKEGNGYISTDVMREILAELDE-  122 (158)
T ss_dssp             CCCCC-----------------------T--------------TTTSSTHHHHHHHHCSSSSSSEEHHHHHHHHHHHCT-
T ss_pred             ccccc-----------------------h--------------hhHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhCC-
Confidence            11100                       0              011224778999999999999999999988875421 


Q ss_pred             CCC---CCCCCCCccccCCcccchhhhhhh
Q 006490          349 PWD---EAPYKDAAETTALGNLTLKGFVSK  375 (643)
Q Consensus       349 p~~---~~~~~~~~~~~~~~~~~~~~~~~~  375 (643)
                      +..   ...+......+.+|.|+...|+..
T Consensus       123 ~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~  152 (158)
T 2jnf_A          123 TLSSEDLDAMIDEIDADGSGTVDFEEFMGV  152 (158)
T ss_dssp             TCCHHHHHHHHHHHCSSCCSEECSHHHHHH
T ss_pred             cCCHHHHHHHHHHhCCCCCCcEeHHHHHHH
Confidence            111   111112233466777777777654

>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated, SEN membrane targeting, EF-hand, cell projection, cilium; 2.00A {Trypanosoma cruzi}

Probab=95.62  E-value=0.015  Score=55.00  Aligned_cols=145  Identities=13%  Similarity=0.079  Sum_probs=91.2

Q ss_pred             hHHHHHHHHhhhhhcCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHHhh----ccCCcCCCCcChhhHHHHHHH
Q 006490          191 KPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEK----QHDGVNDLGLTLSGFLFLHAL  266 (643)
Q Consensus       191 ~~~~~~~l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~f~~~~~~  266 (643)
                      .+.....++++|...|.+.++.++..|+.......++......++..+...+-..    ....-.+..|+++.|+.+...
T Consensus        43 s~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~I~~~EF~~~~~~  122 (219)
T 3cs1_A           43 TAEAKQRRIELFKKFDKNETGKLCYDEVYSGCLEVLKLDEFTSRVRDITKRAFDKSRTLGSKLENKGSEDFVEFLEFRLM  122 (219)
T ss_dssp             SHHHHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHTTCGGGTCSCHHHHHHHHHHHHHHHHHHHHTSCCCSSBCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhhhhccCCCCcCCHHHHHHHHHH
Confidence            3445667888999999999999999999876655455545555555443322110    000001335888999887442


Q ss_pred             HHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCChhHHhhhhccCC
Q 006490          267 FIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAP  346 (643)
Q Consensus       267 ~~~~~~~~~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~~~~~~  346 (643)
                      ...                                          .....-++.+|+.||.|++|.++.+|+..++....
T Consensus       123 ~~~------------------------------------------~~~~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~g  160 (219)
T 3cs1_A          123 LCY------------------------------------------IYDFFELTVMFDEIDASGNMLVDEEEFKRAVPKLE  160 (219)
T ss_dssp             HHH------------------------------------------HHHHHHHHHHHHTTCSSSSSEEEHHHHHHHHHHHH
T ss_pred             Hhc------------------------------------------cchHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhc
Confidence            210                                          01134578899999999999999999999886531


Q ss_pred             --CC-CCCCCCCCCCccccCCcccchhhhhhhhh
Q 006490          347 --ES-PWDEAPYKDAAETTALGNLTLKGFVSKWA  377 (643)
Q Consensus       347 --~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~w~  377 (643)
                        .. +.....+......+.+|.|+...|+....
T Consensus       161 ~~~~~~~e~~~l~~~~D~d~dG~I~~~EF~~~~~  194 (219)
T 3cs1_A          161 AWGAKVEDPAALFKELDKNGTGSVTFDEFAAWAS  194 (219)
T ss_dssp             HHTCCCSCHHHHHHHHCTTSSSEEEHHHHHHHHH
T ss_pred             ccCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHH
Confidence              11 11112222234457788898888876643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	643
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	5e-20
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	6e-08
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	8e-19
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	8e-09
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	8e-17
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	3e-08
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	1e-15
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	4e-05
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	2e-15
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	2e-09
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	3e-15
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	4e-13
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	4e-15
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	2e-11
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	1e-14
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	6e-11
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	1e-14
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	8e-13
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	6e-14
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	2e-07
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	6e-14
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	1e-09
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	7e-14
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	2e-12
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	8e-14
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	9e-10
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	1e-13
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	5e-07
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	2e-13
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	1e-08
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	4e-13
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	5e-07
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	5e-13
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	7e-10
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	6e-13
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	1e-11
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	5e-12
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	4e-11
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	7e-12
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	6e-11
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	9e-12
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	6e-06
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	1e-11
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	5e-08
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	1e-11
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	6e-08
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	1e-11
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	2e-08
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	2e-11
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	2e-08
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	2e-11
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	4e-08
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	4e-11
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	3e-09
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	5e-11
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	1e-10
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	1e-10
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	8e-05
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	2e-10
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	5e-06
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	3e-10
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	0.003
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	3e-10
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	5e-05
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	3e-10
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	3e-08
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	5e-10
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	0.003
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	6e-10
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	2e-04
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	7e-10
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	1e-05
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	1e-09
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	4e-06
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	2e-09
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	2e-05
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	3e-09
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	4e-08
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	3e-09
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	8e-07
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	8e-09
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	3e-08
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	2e-08
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	2e-06
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	3e-08
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	2e-05
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	4e-08
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	2e-05
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	7e-08
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	3e-04
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	2e-07
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	8e-05
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	5e-07
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	3e-04
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	2e-06
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	8e-06
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	2e-06
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	2e-06
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	2e-06
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	6e-05
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	1e-05
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	7e-05
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	1e-05
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	1e-04
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	1e-05
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	0.004
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	2e-05
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	6e-05
d1h65a_	257	c.37.1.8 (A:) Chloroplast protein translocon GTPas	7e-05
d1egaa1	179	c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {	1e-04
d1mkya2	186	c.37.1.8 (A:173-358) Probable GTPase Der, N-termin	3e-04
d1lnza2	185	c.37.1.8 (A:158-342) Obg GTP-binding protein middl	7e-04
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	0.002
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	0.002
d1xzpa2	160	c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog	0.002
d2cxxa1	184	c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc	0.002
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	0.002
d1uhka1	187	a.39.1.5 (A:3-189) Calcium-regulated photoprotein	0.002
d2gj8a1	161	c.37.1.8 (A:216-376) Probable tRNA modification GT	0.004

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.8 bits (211), Expect = 5e-20
 Identities = 44/177 (24%), Positives = 74/177 (41%), Gaps = 10/177 (5%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLE 71
           ++ VVVGD   GK+ L+ +  T + P + +P V              V + + DT+   +
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 65

Query: 72  NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH 131
                     + D  ++ ++    ++   + + W PE+R      PII+ G KLDLR D 
Sbjct: 66  YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 125

Query: 132 NATSLEEVMGPI-------MQQFREIETC--VECSATTMIQVPDVFYYAQKAVLHPT 179
           +     +            +   +EI     +ECSA T   +  VF  A +AVL P 
Sbjct: 126 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 182

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.8 bits (120), Expect = 6e-08
 Identities = 36/182 (19%), Positives = 58/182 (31%), Gaps = 20/182 (10%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
            +C++ G    GK+ LL S+    F   Y PT  + Y+ N      G    L L +   +
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN--VMVDGKPVNLGLWDTAGQ 63

Query: 484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKD 543
                L       +    I     S         +   EV     +     P +L+ +K 
Sbjct: 64  EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPN----TPIILVGTKL 119

Query: 544 DL-------------KPYTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVFSRIIWAAE 589
           DL             K   +       + +E+G    +  S  ++  L  VF   I A  
Sbjct: 120 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 179

Query: 590 HP 591
            P
Sbjct: 180 CP 181

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.7 bits (203), Expect = 8e-19
 Identities = 41/179 (22%), Positives = 69/179 (38%), Gaps = 10/179 (5%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLE 71
           ++ VVVGD   GK+ L+ +  T   P + VP V     +      +   + + DT+   +
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63

Query: 72  NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH 131
                     + D  ++ ++    S+   +   W+PE+     K P ++ G ++DLR D 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123

Query: 132 NATSLEEVMGPIMQQFREIE---------TCVECSATTMIQVPDVFYYAQKAVLHPTAP 181
           +                  E           VECSA T   + +VF  A  A L P  P
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEP 182

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.5 bits (127), Expect = 8e-09
 Identities = 36/182 (19%), Positives = 62/182 (34%), Gaps = 20/182 (10%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
            +C++ G    GK+ LL S+    F   Y PT  + Y    V   G      +     +E
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQE 62

Query: 484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKD 543
              ++           +  F   S   +  +  KE  V             P LL+ ++ 
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSF--ENVKEKWVPEITHHCPK---TPFLLVGTQI 117

Query: 544 DL-------------KPYTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVFSRIIWAAE 589
           DL             K   +  + + ++ ++L     +  S  ++  L NVF   I AA 
Sbjct: 118 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177

Query: 590 HP 591
            P
Sbjct: 178 EP 179

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.6 bits (187), Expect = 8e-17
 Identities = 43/175 (24%), Positives = 74/175 (42%), Gaps = 10/175 (5%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPP-VHAPTRLPPDFYPDRVPVTIIDTSSSLEN 72
           + VVVGD   GK+ L+ + A ++ PE+  P V     +       +  + + DT+   + 
Sbjct: 11  KCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDY 70

Query: 73  KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN 132
                      D  ++ ++    ++   +   W+PEL+     VP ++ G ++DLR D  
Sbjct: 71  DRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPK 130

Query: 133 ATSLEEVMGPIM-------QQFREIETC--VECSATTMIQVPDVFYYAQKAVLHP 178
             +    M           +  +EI  C  VECSA T   +  VF  A  A+L P
Sbjct: 131 TLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAILTP 185

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (123), Expect = 3e-08
 Identities = 37/182 (20%), Positives = 68/182 (37%), Gaps = 20/182 (10%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
            +C++ G    GK+ LL S+    F E Y PT  + YAV+ V   G      +     +E
Sbjct: 10  LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVS-VTVGGKQYLLGLYDTAGQE 68

Query: 484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKD 543
              ++      +    +  F   +   +   + + +        ++    VP LLI ++ 
Sbjct: 69  DYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWV-----PELKEYAPNVPFLLIGTQI 123

Query: 544 DL-------------KPYTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVFSRIIWAAE 589
           DL             K   + V+   ++ +E+G    +  S  ++  L  VF   I A  
Sbjct: 124 DLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL 183

Query: 590 HP 591
            P
Sbjct: 184 TP 185

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 73.5 bits (179), Expect = 1e-15
 Identities = 47/175 (26%), Positives = 76/175 (43%), Gaps = 11/175 (6%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLE 71
            ++VVVGD   GK++L+   A +  PE  VP V        +    R+ +++ DTS S  
Sbjct: 3   CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPY 62

Query: 72  NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD- 130
                      +DAV++ +  ++  TL  +   W  E++       +++ GCK DLR D 
Sbjct: 63  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 122

Query: 131 --------HNATSLEEVMGPIMQQFREIETCVECSATTMI-QVPDVFYYAQKAVL 176
                   H  T +    G  M +     T +ECSA      V D+F+ A  A +
Sbjct: 123 STLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACV 177

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.3 bits (98), Expect = 4e-05
 Identities = 31/179 (17%), Positives = 59/179 (32%), Gaps = 21/179 (11%)

Query: 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG 484
           + ++ G    GK+ALL+ F +  F ENY PT  E Y  +        + +L         
Sbjct: 4   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY 63

Query: 485 VKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDD 544
                    +    D  +  +D S   +      +L +     ++       LL+  K D
Sbjct: 64  DNV---RPLSYPDSDAVLICFDISRPETL---DSVLKKWKGEIQEFCPNTKMLLVGCKSD 117

Query: 545 LKPYTMAVQDSARVTQ-------------ELGIEPPIPVSMKSKD--LNNVFSRIIWAA 588
           L+     + + +   Q             ++G    I  S    +  + ++F     A 
Sbjct: 118 LRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLAC 176

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.8 bits (175), Expect = 2e-15
 Identities = 38/166 (22%), Positives = 61/166 (36%), Gaps = 10/166 (6%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPD--RVPVTIIDTSSSLE 71
           + +++GD G GKS L+     +      P                 ++ + I DT+    
Sbjct: 6   KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQER 65

Query: 72  NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH 131
            +       + A   ++ Y   ++ST + LSS+             II+ G K DL    
Sbjct: 66  FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQR 125

Query: 132 NATSLEEVMGPIMQQFREIETC--VECSATTMIQVPDVFYYAQKAV 175
           + T  E       +QF E      +E SA T   V D F  A K +
Sbjct: 126 DVTYEE------AKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 165

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.5 bits (130), Expect = 2e-09
 Identities = 30/164 (18%), Positives = 62/164 (37%), Gaps = 6/164 (3%)

Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
           +F+ ++ G    GKS LL+ F E+ F  +   T G ++   +++  G   K  I     +
Sbjct: 4   IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQ 63

Query: 483 EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASK 542
           E  + +   +         + VYD +   ++      L +       +      +LI +K
Sbjct: 64  ERFRAV--TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARN---LTNPNTVIILIGNK 118

Query: 543 DDLKPYTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVFSRII 585
            DL+       + A+   E      +  S K+ + + + F    
Sbjct: 119 ADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAA 162

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.8 bits (175), Expect = 3e-15
 Identities = 35/164 (21%), Positives = 61/164 (37%), Gaps = 6/164 (3%)

Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
           +F+ +L G    GKS LL+ F    F+     T G ++A   +   G   K  I     +
Sbjct: 4   LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 63

Query: 483 EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASK 542
           E  ++I             + VYD +   +++  +  L E+    +     +  +L+ +K
Sbjct: 64  ERYRRI--TSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS---NIVIMLVGNK 118

Query: 543 DDLKPYTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVFSRII 585
            DL+       D AR   E      I  S      +   F  I+
Sbjct: 119 SDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNIL 162

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.7 bits (159), Expect = 4e-13
 Identities = 29/166 (17%), Positives = 54/166 (32%), Gaps = 6/166 (3%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPD--RVPVTIIDTSSSLE 71
           +VV++GD G GKS+L++         +                D   +   I DT+    
Sbjct: 6   KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 65

Query: 72  NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH 131
            +   +   + A   +L Y   +  T   +  +        +  + I++ G K DLR   
Sbjct: 66  YRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLR 125

Query: 132 NATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLH 177
              + E              + +E SA     V + F      +  
Sbjct: 126 AVPTDEARAFAEKNNL----SFIETSALDSTNVEEAFKNILTEIYR 167

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 71.3 bits (174), Expect = 4e-15
 Identities = 23/165 (13%), Positives = 57/165 (34%), Gaps = 6/165 (3%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPD--RVPVTIIDTSSSLE 71
           +++++GD G GK+ ++   + ++                    D  R+ + I DT+    
Sbjct: 8   KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 67

Query: 72  NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH 131
            +       + A  ++L Y    + +   + ++           V  ++ G K D+    
Sbjct: 68  FRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKR 127

Query: 132 NATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVL 176
             +        +    +     +E SA   I V + F+   + + 
Sbjct: 128 QVSKERGEKLALDYGIK----FMETSAKANINVENAFFTLARDIK 168

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.9 bits (147), Expect = 2e-11
 Identities = 30/164 (18%), Positives = 61/164 (37%), Gaps = 6/164 (3%)

Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
           +F+ LL G    GK+ +L  F E  F+  +  T G  + +  ++  G   K  I     +
Sbjct: 6   LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQ 65

Query: 483 EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASK 542
           E  + I             + VYD ++E S+     +   +  + E +   V  +++ +K
Sbjct: 66  ERFRTI--TTAYYRGAMGIMLVYDITNEKSFDN---IRNWIRNIEEHASADVEKMILGNK 120

Query: 543 DDLKPYTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVFSRII 585
            D+       ++             +  S K+   + N F  + 
Sbjct: 121 CDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLA 164

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.3 bits (171), Expect = 1e-14
 Identities = 29/166 (17%), Positives = 58/166 (34%), Gaps = 6/166 (3%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPP--VHAPTRLPPDFYPDRVPVTIIDTSSSLE 71
           + +++GD G GKS L+     +                   +    ++ + I DT+    
Sbjct: 5   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQES 64

Query: 72  NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH 131
            +       + A   +L Y   ++ T + L+S+     +     + I++ G K D   + 
Sbjct: 65  FRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSD--LES 122

Query: 132 NATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLH 177
                 E      ++   I   +E SA T   V + F    K +  
Sbjct: 123 RRDVKREEGEAFAREHGLI--FMETSAKTACNVEEAFINTAKEIYR 166

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.5 bits (143), Expect = 6e-11
 Identities = 29/164 (17%), Positives = 58/164 (35%), Gaps = 6/164 (3%)

Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
           +F+ ++ G    GKS LL  F ++ F   +  T G ++   +V+  G   K  I     +
Sbjct: 3   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQ 62

Query: 483 EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASK 542
           E  + I   +         + VYD +   ++      L +  +        +  +LI +K
Sbjct: 63  ESFRSI--TRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSS---NMVIMLIGNK 117

Query: 543 DDLKPYTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVFSRII 585
            DL+      ++             +  S K+   +   F    
Sbjct: 118 SDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTA 161

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.8 bits (170), Expect = 1e-14
 Identities = 27/165 (16%), Positives = 58/165 (35%), Gaps = 7/165 (4%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPP--DFYPDRVPVTIIDTSSSLE 71
           +++++GD G GKS L+     +                   D    +V + I DT+    
Sbjct: 4   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 63

Query: 72  NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH 131
            +       + A  ++L Y    + T + +  ++         +  +++ G K D+    
Sbjct: 64  FRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRV 123

Query: 132 NATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVL 176
                    G  + +   I   +E SA     V ++F+   K + 
Sbjct: 124 VTAD----QGEALAKELGIP-FIESSAKNDDNVNEIFFTLAKLIQ 163

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.4 bits (156), Expect = 8e-13
 Identities = 44/165 (26%), Positives = 70/165 (42%), Gaps = 7/165 (4%)

Query: 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIP 481
           ++ + LL G    GKS LL  F+E  F+ ++  T G  + +  VD  G   K  I     
Sbjct: 1   SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAG 60

Query: 482 EEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIAS 541
           +E  + I             I VYD +DE ++   K+    V     D       LL+ +
Sbjct: 61  QERFRTI--TTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDE---AQLLLVGN 115

Query: 542 KDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVFSRII 585
           K D++   +       + +ELGI P I  S K+ D +N +F  + 
Sbjct: 116 KSDMETRVVTADQGEALAKELGI-PFIESSAKNDDNVNEIFFTLA 159

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.0 bits (165), Expect = 6e-14
 Identities = 30/167 (17%), Positives = 56/167 (33%), Gaps = 8/167 (4%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVP--VTIIDTSSSLE 71
           + +V+G+ GTGKS L+     +   +                       + I DT+    
Sbjct: 7   KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 66

Query: 72  NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH 131
            +       + A   +L Y    + T + L+++           + II+ G K       
Sbjct: 67  FRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNK-----KD 121

Query: 132 NATSLEEVMGPIMQQFREIE-TCVECSATTMIQVPDVFYYAQKAVLH 177
                E       +  +E E   +E SA T   V + F    + +L+
Sbjct: 122 LDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILN 168

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (117), Expect = 2e-07
 Identities = 28/164 (17%), Positives = 60/164 (36%), Gaps = 6/164 (3%)

Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
           +F+ L+ G    GKS LL+ F+E+ F ++   T G ++   +++  G   K  I     +
Sbjct: 5   LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQ 64

Query: 483 EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASK 542
           E  + +   +         + VYD +   ++     L   +      +   +  +L  +K
Sbjct: 65  ERFRSV--TRSYYRGAAGALLVYDITSRETY---NALTNWLTDARMLASQNIVIILCGNK 119

Query: 543 DDLKPYTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVFSRII 585
            DL          A    +      +  S  + + +   F +  
Sbjct: 120 KDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCA 163

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.9 bits (165), Expect = 6e-14
 Identities = 28/167 (16%), Positives = 60/167 (35%), Gaps = 7/167 (4%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVT--IIDTSSSLE 71
           ++V++G+ G GK+ L+        P           +      +   V   I DT+    
Sbjct: 7   KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQER 66

Query: 72  NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH 131
            +       + A+A++LTY    + +   L  +     +    KV  ++ G K+D     
Sbjct: 67  FRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKID---LA 123

Query: 132 NATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYY-AQKAVLH 177
               + +       + +++   +E SA     V  +F   A + +  
Sbjct: 124 ERREVSQQRAEEFSEAQDMY-YLETSAKESDNVEKLFLDLACRLISE 169

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.2 bits (132), Expect = 1e-09
 Identities = 37/164 (22%), Positives = 63/164 (38%), Gaps = 6/164 (3%)

Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
           +F+ +L G    GK+ L+  F +  F      T G  + +  V+  G   K  I     +
Sbjct: 5   LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQ 64

Query: 483 EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASK 542
           E  + I   +    S +  I  YD + E S++   E L E+ +    +   V  +L+ +K
Sbjct: 65  ERFRSI--TQSYYRSANALILTYDITCEESFRCLPEWLREIEQ---YASNKVITVLVGNK 119

Query: 543 DDLKPYTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVFSRII 585
            DL       Q  A    E      +  S K  D +  +F  + 
Sbjct: 120 IDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLA 163

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 68.3 bits (166), Expect = 7e-14
 Identities = 24/170 (14%), Positives = 55/170 (32%), Gaps = 6/170 (3%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDF--YPDRVPVTIIDTSSSLE 71
           +++++G+ G GKS L+   + ++                        V + I DT+    
Sbjct: 8   KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER 67

Query: 72  NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH 131
            +   +   + +  +++ Y    Q + + +  +     R     V  ++ G K DL+   
Sbjct: 68  FRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKR 127

Query: 132 NATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAP 181
                         +   +ET     A     V D F    + +    + 
Sbjct: 128 VVEYDVAKEFADANKMPFLETS----ALDSTNVEDAFLTMARQIKESMSQ 173

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.1 bits (155), Expect = 2e-12
 Identities = 44/184 (23%), Positives = 74/184 (40%), Gaps = 6/184 (3%)

Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
           +F+ LL G    GKS LL  F +  ++ +Y  T G  + +  V+  G   K  I     +
Sbjct: 6   LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQ 65

Query: 483 EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASK 542
           E  + I S+          I VYD +D+ S+   K  L E+ R    +   V  LL+ +K
Sbjct: 66  ERFRTITSS--YYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATST---VLKLLVGNK 120

Query: 543 DDLKPYTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVFSRIIWAAEHPHLNIPETETG 601
            DLK   +   D A+   +    P +  S      + + F  +    +         ET 
Sbjct: 121 CDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETT 180

Query: 602 RNRK 605
           + ++
Sbjct: 181 QKKE 184

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.6 bits (164), Expect = 8e-14
 Identities = 39/168 (23%), Positives = 70/168 (41%), Gaps = 10/168 (5%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPP-VHAPTRLPPDFYPDRVPVTIIDTSSSLEN 72
           +VVV+G  G GKS+L     T +  EK  P +    R   +       + I+DT+ + + 
Sbjct: 5   KVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQF 64

Query: 73  KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEI-KVPIIVAGCKLDLRGDH 131
               +  +K     +L Y+   Q +   +       +R     KVP+I+ G K+DL  + 
Sbjct: 65  ASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESER 124

Query: 132 NATSLEEVMGPIMQQFREIETC--VECSATTMIQVPDVFYYAQKAVLH 177
             +S E       +   E   C  +E SA +   V ++F    + + +
Sbjct: 125 EVSSSE------GRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMNY 166

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.1 bits (134), Expect = 9e-10
 Identities = 32/163 (19%), Positives = 61/163 (37%), Gaps = 6/163 (3%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
           ++ ++ G    GKSAL   F+   F E Y PT  + Y   +      +   ++     E+
Sbjct: 4   YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQ 63

Query: 484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKD 543
                    +      +   + +       K  ++ ++ V R        VP +L+ +K 
Sbjct: 64  FASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKR-----YEKVPVILVGNKV 118

Query: 544 DLKPYTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVFSRII 585
           DL+          R   E    P +  S KSK  ++ +F+ I+
Sbjct: 119 DLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIV 161

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.3 bits (163), Expect = 1e-13
 Identities = 41/173 (23%), Positives = 71/173 (41%), Gaps = 10/173 (5%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENK 73
           ++V+VGD   GK+ L+   + +  PE   P      +       +     +  ++ LE+ 
Sbjct: 4   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDY 63

Query: 74  GKLNEELKR-ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN 132
            +L        D +++ ++ +   +L  +   W PE++     VPII+ G K DLR D +
Sbjct: 64  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 123

Query: 133 ATSLEEVMGPIMQQFREIE---------TCVECSATTMIQVPDVFYYAQKAVL 176
                  M     +  E             +ECSA T   V +VF  A +A L
Sbjct: 124 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 176

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (113), Expect = 5e-07
 Identities = 30/179 (16%), Positives = 57/179 (31%), Gaps = 20/179 (11%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
            + ++ G    GK+ LL    +  F E Y PT  E Y  ++       +  L      E+
Sbjct: 3   KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLED 62

Query: 484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKD 543
             +    +        +   +       +        V      +     VP +L+ +K 
Sbjct: 63  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV------KHFCPNVPIILVGNKK 116

Query: 544 D-------------LKPYTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVFSRIIWAA 588
           D             +K   +  ++   +   +G    +  S K+KD +  VF     AA
Sbjct: 117 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAA 175

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.5 bits (161), Expect = 2e-13
 Identities = 28/165 (16%), Positives = 61/165 (36%), Gaps = 8/165 (4%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVT--IIDTSSSLE 71
           ++V +G++  GK+SLI     +S             L    Y +   +   + DT+    
Sbjct: 2   KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQER 61

Query: 72  NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH 131
            +  +   ++ + A V+ Y     ++  + + +           V I++ G K DL    
Sbjct: 62  FRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKR 121

Query: 132 NATSLEEVMGPIMQQFREIE-TCVECSATTMIQVPDVFYYAQKAV 175
                +  +    ++ +E+    +E SA     V  +F     A+
Sbjct: 122 -----QVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 161

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.3 bits (124), Expect = 1e-08
 Identities = 32/164 (19%), Positives = 71/164 (43%), Gaps = 8/164 (4%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
           F+ +  G Q+ GK++L+  F+   F   Y  T G  +    +       +  +     +E
Sbjct: 1   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 60

Query: 484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKD 543
             + +      +      + VYD ++  S+++T + + +V     + G  V  +L+ +K 
Sbjct: 61  RFRSL--IPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRT---ERGSDVIIMLVGNKT 115

Query: 544 DLK-PYTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVFSRII 585
           DL     +++++  R  +EL +   I  S K+   +  +F R+ 
Sbjct: 116 DLADKRQVSIEEGERKAKELNV-MFIETSAKAGYNVKQLFRRVA 158

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 65.7 bits (159), Expect = 4e-13
 Identities = 22/166 (13%), Positives = 47/166 (28%), Gaps = 8/166 (4%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA--PTRLPPDFYPDRVPVTIIDTSSSLE 71
           +++++G+   GK+S +   A +S                       R+ + I DT+    
Sbjct: 7   KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQER 66

Query: 72  NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH 131
            +       + A   +L Y    + + + +  +             +++ G K       
Sbjct: 67  YRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNK-----CD 121

Query: 132 NATSLEEVMGPIMQQFREIE-TCVECSATTMIQVPDVFYYAQKAVL 176
                        Q    +     E SA   I V   F      + 
Sbjct: 122 MEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVIC 167

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.9 bits (113), Expect = 5e-07
 Identities = 29/163 (17%), Positives = 62/163 (38%), Gaps = 6/163 (3%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
           F+ L+ G  + GK++ L  + +  F+  +  T G  + V  + +     K  I     +E
Sbjct: 6   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQE 65

Query: 484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKD 543
             + I             I +YD ++E S+   ++   ++     D+      LL+ +K 
Sbjct: 66  RYRTI--TTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQ---VLLVGNKC 120

Query: 544 DLKPYTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVFSRII 585
           D++   +   +  R   +         S K    +   F R++
Sbjct: 121 DMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLV 163

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score = 65.3 bits (158), Expect = 5e-13
 Identities = 31/166 (18%), Positives = 63/166 (37%), Gaps = 8/166 (4%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENK 73
           +V++VG  G GKS+L      +   E   P  A +               I  ++  E+ 
Sbjct: 6   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 65

Query: 74  GKLNEELKR-ADAVVLTYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGD 130
             + +   R  +  +  ++  +  + +  ++ +  ++ R++    VP ++ G K DL   
Sbjct: 66  AAIRDNYFRSGEGFLCVFSITEMESFAA-TADFREQILRVKEDENVPFLLVGNKSDLEDK 124

Query: 131 HNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVL 176
              +  E        Q+      VE SA T   V  VF+   + + 
Sbjct: 125 RQVSVEE--AKNRADQWN--VNYVETSAKTRANVDKVFFDLMREIR 166

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score = 56.1 bits (134), Expect = 7e-10
 Identities = 35/164 (21%), Positives = 72/164 (43%), Gaps = 8/164 (4%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
            + ++ G    GKSAL   F+   F E+Y PT  + Y   VV      +  ++     E+
Sbjct: 5   HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED 64

Query: 484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKD 543
                 +      S +  + V+  ++  S+  T +   ++ R+ ED    VP LL+ +K 
Sbjct: 65  YAAIRDNYFR---SGEGFLCVFSITEMESFAATADFREQILRVKEDE--NVPFLLVGNKS 119

Query: 544 DL-KPYTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVFSRII 585
           DL     ++V+++     +  +   +  S K++  ++ VF  ++
Sbjct: 120 DLEDKRQVSVEEAKNRADQWNV-NYVETSAKTRANVDKVFFDLM 162

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.0 bits (157), Expect = 6e-13
 Identities = 26/168 (15%), Positives = 61/168 (36%), Gaps = 4/168 (2%)

Query: 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQE 479
           + ++F+ +L G    GKS+L+N ++   F      T G ++    ++  G      I   
Sbjct: 3   KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDT 62

Query: 480 IPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGE-DSGYGVPCLL 538
             +E  + +          D  +  +   D  S++       E     +       P ++
Sbjct: 63  AGQERFRSL--RTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVI 120

Query: 539 IASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVFSRII 585
           + +K D+    ++ +++    ++ G  P    S K    +   F   +
Sbjct: 121 LGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAV 168

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.5 bits (148), Expect = 1e-11
 Identities = 33/169 (19%), Positives = 52/169 (30%), Gaps = 10/169 (5%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVP-PVHAPTRLPPDFYPDRVPVTIIDTSSSLEN 72
           +V+++GD G GKSSL+    T     ++   +                   I  ++  E 
Sbjct: 8   KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQER 67

Query: 73  KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRL-----EIKVPIIVAGCKLDL 127
              L     R     L       S   +  S W  E             P ++ G K+D+
Sbjct: 68  FRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDI 127

Query: 128 RGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVL 176
                +T   E      +   +     E SA     V   F  A + VL
Sbjct: 128 SERQVST---EEAQAWCRDNGDYP-YFETSAKDATNVAAAFEEAVRRVL 172

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.3 bits (150), Expect = 5e-12
 Identities = 30/166 (18%), Positives = 56/166 (33%), Gaps = 9/166 (5%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENK 73
           ++VVVG  G GKS+L          ++  P    +            +  I  ++  E  
Sbjct: 5   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64

Query: 74  GKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDH 131
             + ++  R     L       +        +  +++R++    VP+++ G K DL    
Sbjct: 65  SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAART 124

Query: 132 NATSLEEVMGPIMQQFREIE-TCVECSATTMIQVPDVFYYAQKAVL 176
             +             R      +E SA T   V D FY   + + 
Sbjct: 125 VESR------QAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.6 bits (143), Expect = 4e-11
 Identities = 32/164 (19%), Positives = 72/164 (43%), Gaps = 9/164 (5%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
           ++ ++ G    GKSAL    ++  F + Y PT  + Y   VV       +T +L  +   
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDG----ETCLLDILDTA 59

Query: 484 GVKKILSNKEALASCDVTIFV-YDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASK 542
           G ++  + ++            +  ++  S++   +   ++ R+ +     VP +L+ +K
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSD--DVPMVLVGNK 117

Query: 543 DDLKPYTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVFSRII 585
            DL   T+  + +  + +  GI P I  S K++  + + F  ++
Sbjct: 118 CDLAARTVESRQAQDLARSYGI-PYIETSAKTRQGVEDAFYTLV 160

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.0 bits (149), Expect = 7e-12
 Identities = 34/171 (19%), Positives = 61/171 (35%), Gaps = 9/171 (5%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVT---IIDTSSSL 70
           +V+++GD G GK+SL+     +   ++         L  +   D   V    + DT+   
Sbjct: 4   KVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQE 63

Query: 71  ENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIK----VPIIVAGCKLD 126
             +       + AD  VL Y     S+   + S+    L    +      P ++ G K+D
Sbjct: 64  RFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKID 123

Query: 127 LRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLH 177
                   S E+    + +   +I      SA   I V   F    ++ L 
Sbjct: 124 AEESKKIVS-EKSAQELAKSLGDIP-LFLTSAKNAINVDTAFEEIARSALQ 172

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.3 bits (142), Expect = 6e-11
 Identities = 33/172 (19%), Positives = 72/172 (41%), Gaps = 7/172 (4%)

Query: 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIP 481
           N+ + ++ G    GK++L++ ++   +S+ Y  T G  +    V   G    T+ + +  
Sbjct: 1   NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTA 60

Query: 482 EEGVKKILSNKEALAS-CDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGY-GVPCLLI 539
             G ++  S   A     D  + VYD ++  S++  K    E       +     P +++
Sbjct: 61  --GQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVIL 118

Query: 540 ASKDDLKP--YTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVFSRIIWAA 588
            +K D +     ++ + +  + + LG  P    S K+   ++  F  I  +A
Sbjct: 119 GNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSA 170

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.8 bits (149), Expect = 9e-12
 Identities = 27/165 (16%), Positives = 61/165 (36%), Gaps = 7/165 (4%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYP---DRVPVTIIDTSSSL 70
           +V++VGD G GK+ L+      +                        +V + + DT+   
Sbjct: 8   KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE 67

Query: 71  ENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD 130
             +   +   + A A++L Y    +++   + ++        +  V +++ G K+D   +
Sbjct: 68  RFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHE 127

Query: 131 HNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAV 175
                 +   G  + +   +   +E SA T + V   F    K +
Sbjct: 128 RVVKRED---GEKLAKEYGLP-FMETSAKTGLNVDLAFTAIAKEL 168

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (104), Expect = 6e-06
 Identities = 33/169 (19%), Positives = 62/169 (36%), Gaps = 15/169 (8%)

Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSEN-YAPTTGEQYAVNVVDQPGGNKKTLIL---- 477
            F+ +L G    GK+ LL  F +  F    +  T G  +   V+D  G   K  +     
Sbjct: 6   AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAG 65

Query: 478 QEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCL 537
           QE           +          + +YD +++ S+   +  L E+    +        L
Sbjct: 66  QERFRSVTHAYYRD------AHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVA--LML 117

Query: 538 LIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVFSRII 585
           L    D      +  +D  ++ +E G+ P +  S K+   ++  F+ I 
Sbjct: 118 LGNKVDSAHERVVKREDGEKLAKEYGL-PFMETSAKTGLNVDLAFTAIA 165

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.5 bits (148), Expect = 1e-11
 Identities = 25/167 (14%), Positives = 60/167 (35%), Gaps = 10/167 (5%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVT--IIDTSSSLE 71
           +VV++G+   GK+SL+         +K       + L          V   I DT+    
Sbjct: 5   KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQER 64

Query: 72  NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH 131
                    + ++  +L Y    + +  ++ ++     + L  ++ + + G K+DL  + 
Sbjct: 65  FHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKER 124

Query: 132 NATSLEEVMGPIMQQFREIETC--VECSATTMIQVPDVFYYAQKAVL 176
           + +          + + E         SA     + ++F    K ++
Sbjct: 125 HVSI------QEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMI 165

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (120), Expect = 5e-08
 Identities = 30/163 (18%), Positives = 64/163 (39%), Gaps = 6/163 (3%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
           F+ +L G    GK++L+  + E  F++ +  T G  +    ++  G      I     +E
Sbjct: 4   FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 63

Query: 484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKD 543
               +          +  I VYD +DE S+++ K  + E+ +          C++    D
Sbjct: 64  RFHAL--GPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRK--MLGNEICLCIVGNKID 119

Query: 544 DLKPYTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVFSRII 585
             K   +++Q++    + +G       S K    +  +F  + 
Sbjct: 120 LEKERHVSIQEAESYAESVGA-KHYHTSAKQNKGIEELFLDLC 161

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.2 bits (147), Expect = 1e-11
 Identities = 40/164 (24%), Positives = 71/164 (43%), Gaps = 5/164 (3%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPP-VHAPTRLPPDFYPDRVPVTIIDTSSSLEN 72
           ++VV+G  G GKS+L          EK  P +    R   +    +  + I+DT+ + + 
Sbjct: 5   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQF 64

Query: 73  KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIK-VPIIVAGCKLDLRGDH 131
               +  +K      L Y+   QST + L       LR  + + VP+I+ G K DL  + 
Sbjct: 65  TAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDER 124

Query: 132 NATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAV 175
                +E    + +Q+      +E SA + I V ++FY   + +
Sbjct: 125 VVG--KEQGQNLARQWCNCA-FLESSAKSKINVNEIFYDLVRQI 165

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (119), Expect = 6e-08
 Identities = 32/165 (19%), Positives = 72/165 (43%), Gaps = 9/165 (5%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
           ++ ++ G    GKSAL   F++  F E Y PT  + Y   V        +  +L+ +   
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDC----QQCMLEILDTA 59

Query: 484 GVKKILS-NKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASK 542
           G ++  +     + +      VY  + + ++   ++L  ++ R+ +     VP +L+ +K
Sbjct: 60  GTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTE--DVPMILVGNK 117

Query: 543 DDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSKD-LNNVFSRII 585
            DL+   +   +    + ++      +  S KSK  +N +F  ++
Sbjct: 118 CDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLV 162

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.2 bits (147), Expect = 1e-11
 Identities = 31/166 (18%), Positives = 55/166 (33%), Gaps = 6/166 (3%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRV-PVTIIDTSSSLE 71
            ++VVVG  G GKS+L              P    +             + I+DT+   E
Sbjct: 7   HKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEE 66

Query: 72  NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIK-VPIIVAGCKLDLRGD 130
                 + ++     +L +A N + + + +   +   LR  +    P+++ G K DL   
Sbjct: 67  FGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQ 126

Query: 131 HNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVL 176
                                   E SA   + V + F    +AV 
Sbjct: 127 RQVPR----SEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVR 168

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (123), Expect = 2e-08
 Identities = 26/165 (15%), Positives = 60/165 (36%), Gaps = 6/165 (3%)

Query: 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIP 481
              + ++ G    GKSAL   F++  F  +Y PT  + Y               +     
Sbjct: 5   ETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKI---CSVDGIPARLDILDT 61

Query: 482 EEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIAS 541
               +     ++ + +    + V+  +D  S+    +L  ++ R+ +   +  P +L+ +
Sbjct: 62  AGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDF--PVVLVGN 119

Query: 542 KDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVFSRII 585
           K DL+      +  A              S K +  ++  F +++
Sbjct: 120 KADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLV 164

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 61.1 bits (147), Expect = 2e-11
 Identities = 25/157 (15%), Positives = 54/157 (34%), Gaps = 5/157 (3%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLEN 72
           VR++++G    GK++L+   A+E +    P      +           + + D     + 
Sbjct: 17  VRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIK---SVQSQGFKLNVWDIGGQRKI 73

Query: 73  KGKLNEELKRADAVVLTY-ACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH 131
           +       +  D ++    + +++                    VP+++   K DL    
Sbjct: 74  RPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA 133

Query: 132 NATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168
            A+ + E +     + R  +    CSA T   V D  
Sbjct: 134 PASEIAEGLNLHTIRDRVWQ-IQSCSALTGEGVQDGM 169

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 51.9 bits (123), Expect = 2e-08
 Identities = 35/183 (19%), Positives = 66/183 (36%), Gaps = 21/183 (11%)

Query: 411 SVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGG 470
           S+ RK +       R LL G  NAGK+ LL        S           +V        
Sbjct: 4   SILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQ------- 56

Query: 471 NKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDS 530
           ++   +         K     +    + D+ I+V DS+D   ++ T + L E+    E+ 
Sbjct: 57  SQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLE--EEK 114

Query: 531 GYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE-------PPIPVSMKSKD-LNNVFS 582
              VP L+ A+K DL    +    ++ + + L +             S  + + + +  +
Sbjct: 115 LSCVPVLIFANKQDL----LTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMN 170

Query: 583 RII 585
            + 
Sbjct: 171 WVC 173

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.5 bits (145), Expect = 2e-11
 Identities = 30/162 (18%), Positives = 58/162 (35%), Gaps = 3/162 (1%)

Query: 11  TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPV--HAPTRLPPDFYPDRVPVTIIDTSS 68
           T +++V++G+   GKSS++    +    E   P    A            V   I DT+ 
Sbjct: 2   TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAG 61

Query: 69  SLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLR 128
                       + A A ++ Y   +  +  +   +      +    + I + G K+D+ 
Sbjct: 62  QERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDML 121

Query: 129 GDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYY 170
            +     +    G  + + + +    E SA T   V DVF  
Sbjct: 122 QEGGERKVAREEGEKLAEEKGL-LFFETSAKTGENVNDVFLG 162

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.2 bits (121), Expect = 4e-08
 Identities = 33/166 (19%), Positives = 66/166 (39%), Gaps = 11/166 (6%)

Query: 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG 484
           + +L G    GKS+++  F+   F+EN  PT G  +    V       K  I     +E 
Sbjct: 5   KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64

Query: 485 VKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDD 544
              +        +    + VYD +   S+ + +  + E+      +   +   L+ +K D
Sbjct: 65  FASL--APMYYRNAQAALVVYDVTKPQSFIKARHWVKELHE---QASKDIIIALVGNKID 119

Query: 545 ----LKPYTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVFSRII 585
                    +A ++  ++ +E G+      S K+ + +N+VF  I 
Sbjct: 120 MLQEGGERKVAREEGEKLAEEKGL-LFFETSAKTGENVNDVFLGIG 164

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.7 bits (143), Expect = 4e-11
 Identities = 37/172 (21%), Positives = 61/172 (35%), Gaps = 8/172 (4%)

Query: 8   SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTS 67
           S +   R+VVVG  G GKS+L              P    +        DR     I  +
Sbjct: 1   SMQEKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDT 60

Query: 68  SSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEI--KVPIIVAGCKL 125
           +  E  G + E+  R     L                +  ++ R++   + P+I+ G K 
Sbjct: 61  AGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKA 120

Query: 126 DLRGDHNATSLEEVMGPIMQQFREIE-TCVECSATTMIQVPDVFYYAQKAVL 176
           DL      T  E       Q  R+++ T +E SA   + V   F+   + + 
Sbjct: 121 DLDHQRQVTQEE-----GQQLARQLKVTYMEASAKIRMNVDQAFHELVRVIR 167

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.7 bits (130), Expect = 3e-09
 Identities = 31/168 (18%), Positives = 73/168 (43%), Gaps = 10/168 (5%)

Query: 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEI 480
           +  +R ++ G    GKSAL   F++  F  +Y PT  + Y    V       +   L  +
Sbjct: 3   QEKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDD----RAARLDIL 58

Query: 481 PEEGVKKILSNKEALAS-CDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLI 539
              G ++  + +E      +  + V+  +D  S++   +   ++ R+ +   +  P +LI
Sbjct: 59  DTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEF--PMILI 116

Query: 540 ASKDDLKPY-TMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVFSRII 585
            +K DL     +  ++  ++ ++L +   +  S K +  ++  F  ++
Sbjct: 117 GNKADLDHQRQVTQEEGQQLARQLKV-TYMEASAKIRMNVDQAFHELV 163

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 60.1 bits (144), Expect = 5e-11
 Identities = 28/167 (16%), Positives = 53/167 (31%), Gaps = 4/167 (2%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
            + ++ G    GK++L+N ++ + FS  Y  T G  +    V          I       
Sbjct: 3   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQI--WDTAG 60

Query: 484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARL-GEDSGYGVPCLLIASK 542
             +            D  + V+D +   ++K       E             P +++ +K
Sbjct: 61  QERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNK 120

Query: 543 DDLKPYTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVFSRIIWAA 588
            DL+   +A + +          P    S K    +   F  I   A
Sbjct: 121 IDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNA 167

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 58.9 bits (141), Expect = 1e-10
 Identities = 38/169 (22%), Positives = 60/169 (35%), Gaps = 10/169 (5%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPP-VHAPTRLPPDFYPDR-VPVTIIDTSSSLE 71
           +V+++GD G GK+SL+     +    +    + A          DR V + I DT+    
Sbjct: 4   KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 63

Query: 72  NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEI----KVPIIVAGCKLDL 127
            +       + AD  VL +     +T   L S+    L +         P +V G K+DL
Sbjct: 64  FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDL 123

Query: 128 RGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVL 176
                AT   +         +      E SA   I V   F    +  L
Sbjct: 124 ENRQVATKRAQ----AWCYSKNNIPYFETSAKEAINVEQAFQTIARNAL 168

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.5 bits (140), Expect = 1e-10
 Identities = 31/165 (18%), Positives = 55/165 (33%), Gaps = 6/165 (3%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPV--HAPTRLPPDFYPDRVPVTIIDTSSSLE 71
           ++V++G+   GKSSL+         E        A            V   I DT+    
Sbjct: 8   KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67

Query: 72  NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH 131
                    + A A ++ Y    + + +R  ++     R+    + I ++G K DL    
Sbjct: 68  YHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKR 127

Query: 132 NATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVL 176
                E                +E SA T + V ++F    K + 
Sbjct: 128 AVDFQEAQSYADDNSLL----FMETSAKTSMNVNEIFMAIAKKLP 168

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (96), Expect = 8e-05
 Identities = 29/163 (17%), Positives = 49/163 (30%), Gaps = 6/163 (3%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
           F+ +L G    GKS+L+  F++  F E    T G  +    V       K  I     +E
Sbjct: 7   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66

Query: 484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKD 543
               +                    D  + +        V  L   +   +   L  +K 
Sbjct: 67  RYHSLAP-----MYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKA 121

Query: 544 DLKPYTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVFSRII 585
           DL          A+   +      +  S K+   +N +F  I 
Sbjct: 122 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIA 164

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.7 bits (138), Expect = 2e-10
 Identities = 27/165 (16%), Positives = 57/165 (34%), Gaps = 9/165 (5%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLEN 72
           ++V+VGD GTGK++ +    T    +K V  +                   +  ++  E 
Sbjct: 5   KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 64

Query: 73  KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN 132
            G L +         +           +    W  +L R+   +PI++ G K+D++    
Sbjct: 65  FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK- 123

Query: 133 ATSLEEVMGPIMQQFREIE-TCVECSATTMIQVPDVFYYAQKAVL 176
                 V    +   R+      + SA +       F +  + ++
Sbjct: 124 ------VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 162

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (105), Expect = 5e-06
 Identities = 26/163 (15%), Positives = 53/163 (32%), Gaps = 9/163 (5%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
           F+ +L G    GK+  +   L   F + Y  T G +    V     G  K  +     +E
Sbjct: 4   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63

Query: 484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKD 543
               +             I ++D +   ++K       ++          +P +L  +K 
Sbjct: 64  KFGGLRDGYY--IQAQCAIIMFDVTSRVTYKNVPNWHRDL----VRVCENIPIVLCGNKV 117

Query: 544 DLKPYTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVFSRII 585
           D+K   +  +      ++  +     +S KS       F  + 
Sbjct: 118 DIKDRKVKAKSIVF-HRKKNL-QYYDISAKSNYNFEKPFLWLA 158

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 57.4 bits (137), Expect = 3e-10
 Identities = 19/158 (12%), Positives = 50/158 (31%), Gaps = 9/158 (5%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENK 73
           R+++VG    GK++++       +   +P +              +  T+ D     + +
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE---TVEYKNISFTVWDVGGQDKIR 58

Query: 74  GKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIK-VPIIVAGCKLDLRGDHN 132
                  +    ++     N +  ++      +  L   E++   ++V   K D     N
Sbjct: 59  PLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQD---LPN 115

Query: 133 ATSLEEVMGPIMQQFREIETC--VECSATTMIQVPDVF 168
           A +  E+   +                AT+   + +  
Sbjct: 116 AMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL 153

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 36.6 bits (83), Expect = 0.003
 Identities = 8/39 (20%), Positives = 11/39 (28%)

Query: 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVN 463
           R L+ G   AGK+ +L                     V 
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVE 40

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 57.7 bits (138), Expect = 3e-10
 Identities = 16/163 (9%), Positives = 50/163 (30%), Gaps = 5/163 (3%)

Query: 9   SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSS 68
           +    +V++VG    GK++++   +   V    P + +      +   +     + D   
Sbjct: 12  NHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVE---EIVINNTRFLMWDIGG 68

Query: 69  SLENKGKLNEELKRADAVVLTYA-CNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDL 127
               +   N      + V++     +++         +         K  +++   K D+
Sbjct: 69  QESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDV 128

Query: 128 RGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYY 170
           +       + + +     +  +      C A T   +     +
Sbjct: 129 KECMTVAEISQFLKLTSIKDHQWH-IQACCALTGEGLCQGLEW 170

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 41.9 bits (97), Expect = 5e-05
 Identities = 25/170 (14%), Positives = 54/170 (31%), Gaps = 21/170 (12%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
            + ++ G  NAGK+ +L  F                  + + +         ++ +I  +
Sbjct: 16  HKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINN------TRFLMWDIGGQ 69

Query: 484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKD 543
              +   N     +  V +   DS+D      T+E L +   L  +       L+ A+K 
Sbjct: 70  ESLRSSWNTYYTNTEFVIVV-VDSTDRERISVTREELYK--MLAHEDLRKAGLLIFANKQ 126

Query: 544 DLKPYTMAVQDSARVTQELGIE-------PPIPVSMKSKD-LNNVFSRII 585
           D+          A ++Q L +                + + L      ++
Sbjct: 127 DV----KECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMM 172

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.3 bits (137), Expect = 3e-10
 Identities = 30/174 (17%), Positives = 48/174 (27%), Gaps = 11/174 (6%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENK 73
           RV V G  G GKSSL+      +  E   P    T          +    I  ++     
Sbjct: 4   RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQF 63

Query: 74  GKLNEELKRADAVVLTYACNQQST---LSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD 130
             +           +              +     + E++     +PI++ G K D    
Sbjct: 64  PAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPS 123

Query: 131 HNATSLEEVMGPIMQQFREIETC--VECSATTMIQVPDVFYYAQKAVLHPTAPL 182
               S E       +       C  +E SA     V ++F          T  L
Sbjct: 124 REVQSSE------AEALARTWKCAFMETSAKLNHNVKELFQELLNLEKRRTVSL 171

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (122), Expect = 3e-08
 Identities = 28/166 (16%), Positives = 57/166 (34%), Gaps = 7/166 (4%)

Query: 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIP 481
           N +R  +FG    GKS+L+  F++  F E+Y PT  + Y   +             Q   
Sbjct: 1   NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTL----QITD 56

Query: 482 EEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIAS 541
             G  +  + +    S      +  S          + + E     +     +P +L+ +
Sbjct: 57  TTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGN 116

Query: 542 KDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSKD-LNNVFSRII 585
           K D  P       ++  + +       +  S K    +  +F  ++
Sbjct: 117 KCDESPSREVQSSEAEALARTWKC-AFMETSAKLNHNVKELFQELL 161

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score = 56.9 bits (136), Expect = 5e-10
 Identities = 19/157 (12%), Positives = 48/157 (30%), Gaps = 5/157 (3%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLEN 72
           +R++++G    GK++++           +P V              V   + D     + 
Sbjct: 13  MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE---TVTYKNVKFNVWDVGGQDKI 69

Query: 73  KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIK-VPIIVAGCKLDLRGDH 131
           +            ++    C  +  +          +   E++   I++   K DL    
Sbjct: 70  RPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM 129

Query: 132 NATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168
               ++E +G    + R         AT+   + +  
Sbjct: 130 KPHEIQEKLGLTRIRDRNWY-VQPSCATSGDGLYEGL 165

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score = 36.9 bits (84), Expect = 0.003
 Identities = 23/166 (13%), Positives = 41/166 (24%), Gaps = 13/166 (7%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
            R L+ G   AGK+ +L                               K  +      ++
Sbjct: 13  MRILMLGLDAAGKTTILYKLKLGQSVTTIPTV----GFNVETVTYKNVKFNVWDVGGQDK 68

Query: 484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKD 543
                             IFV D +D       ++ L  +    E     +     A+K 
Sbjct: 69  IRPLWRHYYT---GTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILI--FANKQ 123

Query: 544 DLKPYTMAVQDSARVTQELGIEPP---IPVSMKSKD-LNNVFSRII 585
           DL       +   ++      +      P    S D L    + + 
Sbjct: 124 DLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLT 169

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.5 bits (135), Expect = 6e-10
 Identities = 29/166 (17%), Positives = 52/166 (31%), Gaps = 7/166 (4%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLEN 72
           +R+ V+GD  +GKSSLI    T S            +           V I + + + + 
Sbjct: 6   LRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPDA 65

Query: 73  KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN 132
           K     +      V      N    +SRL              + + + G +  +     
Sbjct: 66  KFSGWAD--AVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSP 123

Query: 133 ATSLEEVMGPIMQQFREIETC--VECSATTMIQVPDVFYYAQKAVL 176
               +           +++ C   E  AT  + V  VF    + V+
Sbjct: 124 RVVGDA---RARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVV 166

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (93), Expect = 2e-04
 Identities = 32/166 (19%), Positives = 60/166 (36%), Gaps = 13/166 (7%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
            R  + G   +GKS+L++ FL   +      T  EQY         G    ++++E    
Sbjct: 6   LRLGVLGDARSGKSSLIHRFLTGSYQVLE-KTESEQY--KKEMLVDGQTHLVLIREEAGA 62

Query: 484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKD 543
              K           D  IFV+   DE S++    L  +++ L  +   G+   L+ ++D
Sbjct: 63  PDAKFSGW------ADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQD 116

Query: 544 DLKPYTMAVQDSARVTQ---ELGIEPPIPVSMKSKD-LNNVFSRII 585
            +   +  V   AR      ++               ++ VF  + 
Sbjct: 117 RISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVA 162

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score = 56.5 bits (135), Expect = 7e-10
 Identities = 23/157 (14%), Positives = 54/157 (34%), Gaps = 5/157 (3%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLEN 72
           +R++++G  G GK++++       V    P +              + + + D       
Sbjct: 18  LRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVE---TLSYKNLKLNVWDLGGQTSI 74

Query: 73  KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIK-VPIIVAGCKLDLRGDH 131
           +           AV+       +  +S  S      L+  E++   ++V   K D  G  
Sbjct: 75  RPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGAL 134

Query: 132 NATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168
           +A+ + + +  +  + R     V  SA     + +  
Sbjct: 135 SASEVSKELNLVELKDRSWS-IVASSAIKGEGITEGL 170

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score = 44.2 bits (103), Expect = 1e-05
 Identities = 29/166 (17%), Positives = 53/166 (31%), Gaps = 13/166 (7%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
            R L+ G   AGK+ +L             PT G     NV      N K L + ++  +
Sbjct: 18  LRILILGLDGAGKTTILYRLQIGEVVTTK-PTIG----FNVETLSYKNLK-LNVWDLGGQ 71

Query: 484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKD 543
              +         +  V     DS+D+       + L  + +  E+       L+ A+K 
Sbjct: 72  TSIRPYWRCYYADTAAVIFV-VDSTDKDRMSTASKELHLMLQ--EEELQDAALLVFANKQ 128

Query: 544 DLKPYTMAVQDSARVTQELGIEPP---IPVSMKSKD-LNNVFSRII 585
           D      A + S  +      +     +  S    + +      +I
Sbjct: 129 DQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLI 174

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 55.5 bits (132), Expect = 1e-09
 Identities = 29/156 (18%), Positives = 57/156 (36%), Gaps = 2/156 (1%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLEN 72
           + + +VG + +GK++ +   A+    E + P               + +  I       +
Sbjct: 3   MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRS 62

Query: 73  KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN 132
             +       A   ++  A  ++   S+   + L +  +L+  +P++V G K DL G  +
Sbjct: 63  MWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQ-GIPVLVLGNKRDLPGALD 121

Query: 133 ATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168
              L E M     Q REI  C   S      +    
Sbjct: 122 EKELIEKMNLSAIQDREIC-CYSISCKEKDNIDITL 156

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 45.1 bits (105), Expect = 4e-06
 Identities = 24/166 (14%), Positives = 47/166 (28%), Gaps = 12/166 (7%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
               L G Q +GK+  +N      F+E+  PT G                 +  Q     
Sbjct: 3   MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRS 62

Query: 484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKD 543
             ++      A+                +               +    G+P L++ +K 
Sbjct: 63  MWERYCRGVSAIVYMVDAADQEKIEASKNELHNLL--------DKPQLQGIPVLVLGNKR 114

Query: 544 DLKPYTMAVQDSARVTQELGIE---PPIPVSMKSKD-LNNVFSRII 585
           DL       +   ++      +       +S K KD ++     +I
Sbjct: 115 DLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLI 160

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.6 bits (130), Expect = 2e-09
 Identities = 33/165 (20%), Positives = 65/165 (39%), Gaps = 6/165 (3%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDF-YPDRVPVTIIDTSSSLE 71
           ++V ++GD G GKSS++     +S    + P    + +     Y + +   +I  ++ LE
Sbjct: 5   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 64

Query: 72  NKGKLNEE-LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD 130
               L     + + A ++ Y   ++ T S L ++     +     + + +AG K DL   
Sbjct: 65  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 124

Query: 131 HNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAV 175
                 E            I   VE SA   I + ++F    + +
Sbjct: 125 REVM--ERDAKDYADSIHAI--FVETSAKNAININELFIEISRRI 165

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.1 bits (100), Expect = 2e-05
 Identities = 33/163 (20%), Positives = 56/163 (34%), Gaps = 6/163 (3%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
            +  L G    GKS+++  F+E  F  N  PT G  +    V       K LI      E
Sbjct: 5   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 64

Query: 484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKD 543
             + +             I VYD + E ++   K  + E+ + G      V  +     D
Sbjct: 65  RFRAL--APMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPP--SIVVAIAGNKCD 120

Query: 544 DLKPYTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVFSRII 585
                 +  +D+      +     +  S K+   +N +F  I 
Sbjct: 121 LTDVREVMERDAKDYADSIHA-IFVETSAKNAININELFIEIS 162

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.5 bits (130), Expect = 3e-09
 Identities = 28/169 (16%), Positives = 58/169 (34%), Gaps = 10/169 (5%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVP--VTIIDTSSSLE 71
           +++++G+ G GKSSL+     ++   ++               D     + I DT+    
Sbjct: 9   KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 68

Query: 72  NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH 131
            +       + A  V+L Y   ++ T  +L ++             + +      L G+ 
Sbjct: 69  FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNM------LVGNK 122

Query: 132 NATSLEEVMGPIMQQFREIETC--VECSATTMIQVPDVFYYAQKAVLHP 178
                 EV      +F    +   +E SA T   V   F    + ++  
Sbjct: 123 IDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQT 171

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (121), Expect = 4e-08
 Identities = 31/163 (19%), Positives = 61/163 (37%), Gaps = 6/163 (3%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
            + L+ G    GKS+LL  F +  F    A T G  + V  +   G   K  I     +E
Sbjct: 8   LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 67

Query: 484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKD 543
             + +             I VYD +   ++ +    L E+      +   +  +L+ +K 
Sbjct: 68  RFRTL--TPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELET--YCTRNDIVNMLVGNKI 123

Query: 544 DLKPYTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVFSRII 585
           D +   +   +  +  ++  +   I  S K+ D +   F  ++
Sbjct: 124 DKENREVDRNEGLKFARKHSM-LFIEASAKTCDGVQCAFEELV 165

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.3 bits (129), Expect = 3e-09
 Identities = 34/160 (21%), Positives = 62/160 (38%), Gaps = 6/160 (3%)

Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
           +F+ ++ G  N GK+ L   F    F +    T G  +    VD  G   K  +     +
Sbjct: 2   IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 61

Query: 483 EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASK 542
           E  +K    +    +    +FVYD ++  S+      + E  +        +P +L+ +K
Sbjct: 62  ERFRK-SMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQ--HLLANDIPRILVGNK 118

Query: 543 DDLKPYTMAVQDSA-RVTQELGIEPPIPVSMKSKDLN-NV 580
            DL+       D A +      + P    S K+ + N +V
Sbjct: 119 CDLRSAIQVPTDLAQKFADTHSM-PLFETSAKNPNDNDHV 157

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.3 bits (111), Expect = 8e-07
 Identities = 29/166 (17%), Positives = 53/166 (31%), Gaps = 15/166 (9%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRL-PPDFYPDRVPVTIIDTSSSLEN 72
           +++V+GD   GK+ L         P++                        +  ++  E 
Sbjct: 4   KIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQER 63

Query: 73  KGKLNEEL--KRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIK-VPIIVAGCKLDLRG 129
             K   +   +   AVV  Y     ++   L ++     + L    +P I+ G K DLR 
Sbjct: 64  FRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRS 123

Query: 130 DHNATSLEEVMGPIMQQFREIETC--VECSATTM---IQVPDVFYY 170
                +         Q+F +  +    E SA        V  +F  
Sbjct: 124 AIQVPTDL------AQKFADTHSMPLFETSAKNPNDNDHVEAIFMT 163

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.4 bits (127), Expect = 8e-09
 Identities = 23/177 (12%), Positives = 52/177 (29%), Gaps = 17/177 (9%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVPEKVPP------------VHAPTRLPPDFYPDRVP 60
           ++++ +GD G GK++ +          K                +A           +V 
Sbjct: 6   IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 65

Query: 61  VTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIK-VPII 119
           + + DT+     +       + A   +L +    Q +   + ++          +   I+
Sbjct: 66  LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 125

Query: 120 VAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVL 176
           + G K       +   + E     +     I    E SA T   V          ++
Sbjct: 126 LIGNK---ADLPDQREVNERQARELADKYGIP-YFETSAATGQNVEKAVETLLDLIM 178

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.8 bits (123), Expect = 3e-08
 Identities = 24/173 (13%), Positives = 54/173 (31%), Gaps = 13/173 (7%)

Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
           + + L  G    GK+  L  + +  F+  +  T G  +    V            +    
Sbjct: 5   LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKV 64

Query: 483 EGVKKILSNKEALAS--------CDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGV 534
                  + +E   S            + ++D + + S+   +  + ++           
Sbjct: 65  HLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQA--NAYCENP 122

Query: 535 PCLLIASKDDLKPYTMAVQDSAR-VTQELGIEPPIPVSMKSKD-LNNVFSRII 585
             +LI +K DL       +  AR +  + GI P    S  +   +      ++
Sbjct: 123 DIVLIGNKADLPDQREVNERQARELADKYGI-PYFETSAATGQNVEKAVETLL 174

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.4 bits (124), Expect = 2e-08
 Identities = 30/168 (17%), Positives = 62/168 (36%), Gaps = 11/168 (6%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENK 73
           ++VVVGD G GKS+L      +       P    + L      ++  +  +  ++  E  
Sbjct: 6   KLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEF 65

Query: 74  GKLNEELKR-ADAVVLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDH 131
             + E+  R  D  ++ Y+   +++   +  +    LR  +    P+I+   K+DL    
Sbjct: 66  SAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLR 125

Query: 132 NATSLEEVMGPIMQQFREIETC--VECSA-TTMIQVPDVFYYAQKAVL 176
                  V     ++         +E SA    + V   F+   + + 
Sbjct: 126 K------VTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIR 167

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.2 bits (108), Expect = 2e-06
 Identities = 36/166 (21%), Positives = 66/166 (39%), Gaps = 11/166 (6%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
           ++ ++ G    GKSAL   F ++ F  +Y PT  + Y    +     + +  IL  +   
Sbjct: 5   YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSY----LKHTEIDNQWAILDVLDTA 60

Query: 484 GVKKILSNKEALASC-DVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASK 542
           G ++  + +E      D  + VY  +D+ S++        + R         P +L+A+K
Sbjct: 61  GQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILR--VKDRESFPMILVANK 118

Query: 543 DDLKPY-TMAVQDSARVTQELGIEPPIPVSMKSKDLN--NVFSRII 585
            DL     +       +  +  I P I  S K   LN    F  ++
Sbjct: 119 VDLMHLRKVTRDQGKEMATKYNI-PYIETSAKDPPLNVDKTFHDLV 163

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (122), Expect = 3e-08
 Identities = 35/167 (20%), Positives = 64/167 (38%), Gaps = 8/167 (4%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLEN 72
           V++ + G  G GKS+L+    T+    +  P    T        D V    I  ++  E+
Sbjct: 3   VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED 62

Query: 73  KGKLNEELKRADAVVLTYA-CNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH 131
             +    ++  +  VL Y   ++ S    L    + +  +    V +I+ G K DL    
Sbjct: 63  TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSR 122

Query: 132 NATSLEEVMGPIMQQFREIE-TCVECSATT-MIQVPDVFYYAQKAVL 176
             ++ E       +   E+     ECSA T    + ++FY   + V 
Sbjct: 123 QVSTEE-----GEKLATELACAFYECSACTGEGNITEIFYELCREVR 164

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (100), Expect = 2e-05
 Identities = 31/165 (18%), Positives = 65/165 (39%), Gaps = 10/165 (6%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
            +  +FG    GKSAL+  FL + F   Y PT    Y      Q   + + + ++ +   
Sbjct: 3   VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY----RHQATIDDEVVSMEILDTA 58

Query: 484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKD 543
           G +  +  +  +   +  + VYD +D  S++      ++           V  +L+ +K 
Sbjct: 59  GQEDTIQREGHMRWGEGFVLVYDITDRGSFEEVLP--LKNILDEIKKPKNVTLILVGNKA 116

Query: 544 DLKPY-TMAVQDSARVTQELGIEPPIPVSMKSKDLN--NVFSRII 585
           DL     ++ ++  ++  EL        S  + + N   +F  + 
Sbjct: 117 DLDHSRQVSTEEGEKLATELAC-AFYECSACTGEGNITEIFYELC 160

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 50.8 bits (120), Expect = 4e-08
 Identities = 20/157 (12%), Positives = 49/157 (31%), Gaps = 5/157 (3%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLEN 72
           +R++++G    GK++++     E V    P +    +           + I D       
Sbjct: 3   LRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIK---TLEHRGFKLNIWDVGGQKSL 59

Query: 73  KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEI-KVPIIVAGCKLDLRGDH 131
           +       +  D ++       +  +          L    +    +++   K DL G  
Sbjct: 60  RSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL 119

Query: 132 NATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168
           +  +++E +     +         CSA T   +    
Sbjct: 120 SCNAIQEALELDSIRSHHWR-IQGCSAVTGEDLLPGI 155

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 43.5 bits (101), Expect = 2e-05
 Identities = 31/167 (18%), Positives = 55/167 (32%), Gaps = 15/167 (8%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
            R L+ G  NAGK+ +L  F           T       N+        K  I     ++
Sbjct: 3   LRLLMLGLDNAGKTTILKKFNGEDVD-----TISPTLGFNIKTLEHRGFKLNIWDVGGQK 57

Query: 484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKD 543
            ++     +    S D  I+V DS+D    +  +  L  +      +G     L+ A+K 
Sbjct: 58  SLRSY--WRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGA--TLLIFANKQ 113

Query: 544 DLKPYTMAVQDSARVTQELGIEPP----IPVSMKSKD-LNNVFSRII 585
           DL P  ++        +   I          S  + + L      ++
Sbjct: 114 DL-PGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLL 159

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 50.5 bits (119), Expect = 7e-08
 Identities = 22/157 (14%), Positives = 55/157 (35%), Gaps = 5/157 (3%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLEN 72
           +R++++G  G GK++++       V   +P +              +   + D       
Sbjct: 6   MRILILGLDGAGKTTILYRLQVGEVVTTIPTIG---FNVETVTYKNLKFQVWDLGGLTSI 62

Query: 73  KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVP-IIVAGCKLDLRGDH 131
           +          DAV+       +  +    S  +  L   E++   ++V   K D+    
Sbjct: 63  RPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM 122

Query: 132 NATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168
            ++ +   +G    + R+ +   + SAT    + +  
Sbjct: 123 TSSEMANSLGLPALKDRKWQ-IFKTSATKGTGLDEAM 158

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 3e-04
 Identities = 28/166 (16%), Positives = 53/166 (31%), Gaps = 13/166 (7%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
            R L+ G   AGK+ +L              TT      NV      N K  +       
Sbjct: 6   MRILILGLDGAGKTTILYRLQVGEVV-----TTIPTIGFNVETVTYKNLKFQVWDLGGLT 60

Query: 484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKD 543
            ++     +   ++ D  I+V DS D      +K  LV +    E     +   + A+K 
Sbjct: 61  SIRPY--WRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILV--VFANKQ 116

Query: 544 DLKPYTMAVQDSARVTQELGIE---PPIPVSMKSKD-LNNVFSRII 585
           D++    + + +  +      +        S      L+     ++
Sbjct: 117 DMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLV 162

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.3 bits (116), Expect = 2e-07
 Identities = 32/167 (19%), Positives = 61/167 (36%), Gaps = 10/167 (5%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTII--DTSSSL 70
           +++VVVG+   GKSS+I         +          L      +   V ++  DT+   
Sbjct: 3   IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 62

Query: 71  ENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD 130
           E         + A A VL ++   + +   +SS+    +  +   +P  +   K+DL  D
Sbjct: 63  EFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-DIPTALVQNKIDLLDD 121

Query: 131 HNATSLEEVMGPIMQQFREIE-TCVECSATTMIQVPDVFYY-AQKAV 175
                            + ++      S    + V +VF Y A+K +
Sbjct: 122 SCIK-----NEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHL 163

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.2 bits (95), Expect = 8e-05
 Identities = 24/163 (14%), Positives = 60/163 (36%), Gaps = 9/163 (5%)

Query: 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG 484
           + ++ G    GKS+++  + +  F+++Y  T G  +    +       + + L      G
Sbjct: 4   KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVND---EDVRLMLWDTAG 60

Query: 485 VKKI-LSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKD 543
            ++     K         + V+ ++D  S++       +V     D       L+    D
Sbjct: 61  QEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPT---ALVQNKID 117

Query: 544 DLKPYTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVFSRII 585
            L    +  +++  + + L +      S+K    ++ VF  + 
Sbjct: 118 LLDDSCIKNEEAEGLAKRLKL-RFYRTSVKEDLNVSEVFKYLA 159

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.5 bits (114), Expect = 5e-07
 Identities = 29/161 (18%), Positives = 57/161 (35%), Gaps = 11/161 (6%)

Query: 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEI 480
           R V   L  G  ++GK+ L    L   + +    +  +  A+  V+       +L L ++
Sbjct: 1   RAV---LFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYKVNNN--RGNSLTLIDL 54

Query: 481 PEEGVKKILSNKEALASCDVTIFVYDSSD-EYSWKRTKELLVEVARLGEDSGYGVPCLLI 539
           P     +        +S    +FV DS+  +   K   E L +V             L+ 
Sbjct: 55  PGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIA 114

Query: 540 ASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSKDLNNV 580
            +K D+       + +  + Q+L  E       +S   + +
Sbjct: 115 CNKQDI----AMAKSAKLIQQQLEKELNTLRVTRSAAPSTL 151

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.4 bits (93), Expect = 3e-04
 Identities = 21/131 (16%), Positives = 46/131 (35%), Gaps = 5/131 (3%)

Query: 15  VVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENK- 73
           V+ VG   +GK+ L     T    +    +   + +          +T+ID       + 
Sbjct: 3   VLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRF 62

Query: 74  GKLNEELKRADAVVLTY-ACNQQSTLSRLSSYWLPELRRLEIK---VPIIVAGCKLDLRG 129
             L+     A AVV    +   Q  +  ++ +    L           +++A  K D+  
Sbjct: 63  QLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAM 122

Query: 130 DHNATSLEEVM 140
             +A  +++ +
Sbjct: 123 AKSAKLIQQQL 133

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.2 bits (108), Expect = 2e-06
 Identities = 21/163 (12%), Positives = 51/163 (31%), Gaps = 12/163 (7%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENK 73
           +++ +G    GK++L+     + +    P  H  +    +     +  T  D    ++ +
Sbjct: 2   KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSE---ELAIGNIKFTTFDLGGHIQAR 58

Query: 74  GKLNEELKRADAVVLTYAC-NQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN 132
               +     + +V      + +                    VP ++ G K+D     +
Sbjct: 59  RLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVS 118

Query: 133 ATSLEEVMGPI-------MQQFREIETCVECSATTMIQVPDVF 168
              L   +G +       ++  R +E    CS        + F
Sbjct: 119 EAELRSALGLLNTTGSQRIEGQRPVE-VFMCSVVMRNGYLEAF 160

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.3 bits (103), Expect = 8e-06
 Identities = 23/178 (12%), Positives = 49/178 (27%), Gaps = 25/178 (14%)

Query: 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG 484
           + L  G  NAGK+ LL+       +    PT         +         L         
Sbjct: 2   KLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPTSEELAIGNIKFTTFDLGGHI----- 55

Query: 485 VKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDD 544
            +     K+     +  +F+ D++D   +   +  L  +  + E         +I     
Sbjct: 56  -QARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDV---PFVILGNKI 111

Query: 545 LKPYTMAVQDSARVTQELGIEPP-----------IPVSMKSKD-LNNVFSRIIWAAEH 590
             P  ++  +       L                   S+  ++     F    W +++
Sbjct: 112 DAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQ---WLSQY 166

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (108), Expect = 2e-06
 Identities = 29/168 (17%), Positives = 53/168 (31%), Gaps = 9/168 (5%)

Query: 14  RVVVVGDRGTGKSSLIA--AAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLE 71
           RVV++G++G GKS+L    A   +S+      +   T              I+      +
Sbjct: 5   RVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENK 64

Query: 72  NKGKLNEELKRADAVVLTYACNQ---QSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLR 128
            + +   +             +     S              R    +PII+ G K DL 
Sbjct: 65  GENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV 124

Query: 129 GDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVL 176
                +  E     ++   +     +E SA     V ++F    + V 
Sbjct: 125 RCREVSVSEGRACAVVFDCK----FIETSAAVQHNVKELFEGIVRQVR 168

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (107), Expect = 2e-06
 Identities = 32/164 (19%), Positives = 62/164 (37%), Gaps = 5/164 (3%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
           +R +L G Q  GKS L N F     S +       +          G   T+IL ++ E 
Sbjct: 4   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWEN 63

Query: 484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIA-SK 542
             +    +   +   D  + VY  +D  S+++  EL +++ R        +P +L+    
Sbjct: 64  KGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRR--ARQTEDIPIILVGNKS 121

Query: 543 DDLKPYTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVFSRII 585
           D ++   ++V +             I  S   +  +  +F  I+
Sbjct: 122 DLVRCREVSVSEGRACAVVFDC-KFIETSAAVQHNVKELFEGIV 164

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (108), Expect = 2e-06
 Identities = 23/163 (14%), Positives = 50/163 (30%), Gaps = 3/163 (1%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENK 73
           +V+++G  G GKS+L           +                +   + + D       +
Sbjct: 3   KVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGR 62

Query: 74  GKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA 133
                 +   DA V+ Y+   + +  + S   +   R  +     I+             
Sbjct: 63  WLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSRE 122

Query: 134 TSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVL 176
            S++E  G       + +  +E SA     V  +F    + + 
Sbjct: 123 VSVDE--GRACAVVFDCK-FIETSAALHHNVQALFEGVVRQIR 162

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 6e-05
 Identities = 13/38 (34%), Positives = 15/38 (39%), Gaps = 1/38 (2%)

Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQY 460
           V++ LL G    GKSAL   F         A   G  Y
Sbjct: 1   VYKVLLLGAPGVGKSALARIFGGVEDGP-EAEAAGHTY 37

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 44.3 bits (103), Expect = 1e-05
 Identities = 23/169 (13%), Positives = 47/169 (27%), Gaps = 17/169 (10%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVH--APTRLPPDFYPDRVPVTIIDTSSSL 70
            ++V +G    GK++L+     + + + VP +H  +              +     +  +
Sbjct: 14  GKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRV 73

Query: 71  ENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD 130
                              +    +S     S      +      VPI++ G K+D    
Sbjct: 74  WKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIA----NVPILILGNKIDRPEA 129

Query: 131 HNATSLEEVMGPIMQQFREIE-----------TCVECSATTMIQVPDVF 168
            +   L E+ G   Q   +                 CS        + F
Sbjct: 130 ISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGF 178

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 42.0 bits (97), Expect = 7e-05
 Identities = 22/143 (15%), Positives = 47/143 (32%), Gaps = 10/143 (6%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
            + +  G  NAGK+ LL+   +    ++          + +              +    
Sbjct: 14  GKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRV 73

Query: 484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKD 543
                   K  L + +  +F+ D +D      +KE L  +      +   VP L++ +K 
Sbjct: 74  -------WKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIA--NVPILILGNKI 124

Query: 544 DLKPYTMAVQDSARVTQELGIEP 566
           D  P  ++ +    +    G   
Sbjct: 125 DR-PEAISEERLREMFGLYGQTT 146

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.9 bits (108), Expect = 1e-05
 Identities = 25/167 (14%), Positives = 49/167 (29%), Gaps = 11/167 (6%)

Query: 9   SRTGVRVVVVGDRGTGKSSLIAA----AATESVPEKVPPVHAPTRLPPDFYPDRVPVTII 64
             + + V V G+ G+GKSS I         E    K   V       P  +P+   V   
Sbjct: 53  DSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFW 112

Query: 65  DTSSSLENKGKLNEELKR---ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVA 121
           D           +  L++    +          +   + +       +  ++ +   +  
Sbjct: 113 DLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDI--DIAKAISMMKKEFYFVRT 170

Query: 122 GCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168
               D+  + +          ++Q  R    CV       I  P +F
Sbjct: 171 KVDSDITNEADGEPQTFDKEKVLQDIRLN--CVNTFRENGIAEPPIF 215

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.8 bits (100), Expect = 1e-04
 Identities = 18/137 (13%), Positives = 41/137 (29%), Gaps = 10/137 (7%)

Query: 411 SVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFL-ERPFSENYAPTTGEQYAVNVVDQPG 469
           ++    ++ + +V    + G   +GKS+ +N+        E  A T   +  +       
Sbjct: 44  AISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKH 103

Query: 470 GNKKTLILQEIPEEGVKKILSNKEALASC--DVTIFVYDSSDEYSWKRTKELLVEVARLG 527
            N   ++  ++P  G          L         F    S     K   ++   ++   
Sbjct: 104 PNIPNVVFWDLPGIGSTNF-PPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISM-- 160

Query: 528 EDSGYGVPCLLIASKDD 544
                      + +K D
Sbjct: 161 ----MKKEFYFVRTKVD 173

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.6 bits (104), Expect = 1e-05
 Identities = 37/162 (22%), Positives = 65/162 (40%), Gaps = 10/162 (6%)

Query: 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG 484
             ++ GPQN+GK++LL        +++  PT   Q  ++  D  G     +      +  
Sbjct: 5   SIIIAGPQNSGKTSLLTLLT----TDSVRPTVVSQEPLSAADYDGSGVTLVDFPGHVKLR 60

Query: 485 VKKILSNKEALASCDVTIFVYDSS-DEYSWKRTKELLVEVARLGEDSG-YGVPCLLIASK 542
            K     K         IF+ DS+ D      T E LV++  + E S   G+  L+  +K
Sbjct: 61  YKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNK 120

Query: 543 DDLKPYTMAVQDSARVTQELGIEPPIPVSMKSKDLNNVFSRI 584
            +L       +  +++   L  E    +  + K LN V  +I
Sbjct: 121 SEL----FTARPPSKIKDALESEIQKVIERRKKSLNEVERKI 158

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.9 bits (84), Expect = 0.004
 Identities = 20/142 (14%), Positives = 50/142 (35%), Gaps = 5/142 (3%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENK 73
            +++ G + +GK+SL+    T+SV   V      +    D     +           +  
Sbjct: 5   SIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSGVTLVDFPGHVKLRYKLS 64

Query: 74  GKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRL-----EIKVPIIVAGCKLDLR 128
             L    K    ++              ++ +L ++  +     E  + I++A  K +L 
Sbjct: 65  DYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELF 124

Query: 129 GDHNATSLEEVMGPIMQQFREI 150
                + +++ +   +Q+  E 
Sbjct: 125 TARPPSKIKDALESEIQKVIER 146

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (100), Expect = 2e-05
 Identities = 28/167 (16%), Positives = 56/167 (33%), Gaps = 6/167 (3%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
            +  + G ++ GKS+L   F+E  F ++Y PT    +   +      N +   LQ +   
Sbjct: 5   RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITV----NGQEYHLQLVDTA 60

Query: 484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKD 543
           G  +     +  +       +  S          +++                L+   KD
Sbjct: 61  GQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKD 120

Query: 544 DLKPYTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVFSRIIWAAE 589
                 ++ ++   + +       +  S K      +VF RII  AE
Sbjct: 121 LHMERVISYEEGKALAESWNA-AFLESSAKENQTAVDVFRRIILEAE 166

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 6e-05
 Identities = 28/163 (17%), Positives = 53/163 (32%), Gaps = 10/163 (6%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLE 71
            ++ ++G R  GKSSL          +   P +                + ++DT+   E
Sbjct: 5   RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDE 64

Query: 72  NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELR-RLEIKVPIIVAGCKLDLRGD 130
                       +  +L Y+     +   +       L    ++++PI++ G K DL  +
Sbjct: 65  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 124

Query: 131 HNATSLEEVMGPIMQQFREIETC--VECSATTMIQVPDVFYYA 171
              +  E       +   E      +E SA       DVF   
Sbjct: 125 RVISYEE------GKALAESWNAAFLESSAKENQTAVDVFRRI 161

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 42.5 bits (99), Expect = 7e-05
 Identities = 23/175 (13%), Positives = 47/175 (26%), Gaps = 22/175 (12%)

Query: 393 YVGYGGDPAAALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSE-- 450
           + G      A    T+   +    +Q + N    L+ G    GKS+ +NS +        
Sbjct: 4   WSGINTFAPAT--QTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSIS 61

Query: 451 NYAPTTGE--QYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVY--- 505
            +          + +          T  L E        +   K  L    + + +Y   
Sbjct: 62  PFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDR 121

Query: 506 ------DSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQD 554
                 D+ D+   K   +        G+        + +       P  +   +
Sbjct: 122 LDAYRVDNLDKLVAKAITDS------FGKGIWNKA-IVALTHAQFSPPDGLPYDE 169

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 40.9 bits (94), Expect = 1e-04
 Identities = 26/178 (14%), Positives = 60/178 (33%), Gaps = 16/178 (8%)

Query: 428 LFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKT------LILQEIP 481
           + G  N GKS LLN  L +  S         ++ +  +   G  +        L ++E  
Sbjct: 10  IVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKR 69

Query: 482 EEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIAS 541
                   +   ++   ++ IFV + +             E+       G     L +  
Sbjct: 70  AINRLMNKAASSSIGDVELVIFVVEGTRWTPD-------DEMVLNKLREGKAPVILAVNK 122

Query: 542 KDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVFSRII-WAAEHPHLNIPE 597
            D+++     +     +  ++     +P+S ++   ++ + + +     E  H   PE
Sbjct: 123 VDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEATHH-FPE 179

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 40.0 bits (92), Expect = 3e-04
 Identities = 23/176 (13%), Positives = 50/176 (28%), Gaps = 16/176 (9%)

Query: 421 RNVFRCLLFGPQNAGKSALLNSFLER-----------PFSENYAPTTGEQYAVNVVDQPG 469
            +  +  + G  N GKS L N+ L +                      +      VD  G
Sbjct: 6   TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAG 65

Query: 470 GNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGED 529
             +K+ +     E+         +++   DV + V D++   + +  +     +      
Sbjct: 66  LRRKSRVEPRTVEKYSNYR--VVDSIEKADVVVIVLDATQGITRQDQRMA--GLMERRGR 121

Query: 530 SGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVFSRI 584
           +   V           K Y    +        +   P I  S      ++ +   +
Sbjct: 122 ASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAM 177

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

 Score = 38.8 bits (89), Expect = 7e-04
 Identities = 27/188 (14%), Positives = 56/188 (29%), Gaps = 20/188 (10%)

Query: 14  RVVVVGDRGTGKSSLIAA-AATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDT------ 66
            V +VG    GKS+L++  ++ +              L      D     + D       
Sbjct: 3   DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEG 62

Query: 67  SSSLENKG-KLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRR-----LEIKVPIIV 120
           +      G +    ++R   +V     +          Y               + P I+
Sbjct: 63  AHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQII 122

Query: 121 AGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAV-LHPT 179
              K+D+          E +    ++  +       SA T   + ++ +     +   P 
Sbjct: 123 VANKMDMPEA------AENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLENTPE 176

Query: 180 APLFDHDE 187
            PL+D +E
Sbjct: 177 FPLYDEEE 184

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.2 bits (88), Expect = 0.002
 Identities = 24/137 (17%), Positives = 36/137 (26%), Gaps = 20/137 (14%)

Query: 418 QTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLIL 477
           Q  R   R LL G   +GKS ++          +   T+G    +               
Sbjct: 1   QVYRATHRLLLLGAGESGKSTIVKQM----RILHVVLTSG----IFETKFQVDKVN---F 49

Query: 478 QEIPEEGVKKILS-NKEALASCDVTIFVYDSSDEYSW-------KRTKELLVEVAR-LGE 528
                 G +       +        IFV  SS             R +E L         
Sbjct: 50  HMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNN 109

Query: 529 DSGYGVPCLLIASKDDL 545
                +  +L  +K DL
Sbjct: 110 RWLRTISVILFLNKQDL 126

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.0 bits (87), Expect = 0.002
 Identities = 16/121 (13%), Positives = 28/121 (23%), Gaps = 8/121 (6%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
            + LL G   +GKS  +          +  PTTG       +         +  Q     
Sbjct: 3   LKLLLLGTGESGKSTFIKQMRIIHG--SGVPTTGIIEYPFDLQSVIFRMVDVGGQRSERR 60

Query: 484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRT----KELLVEVARLGEDSGYGVPCLLI 539
                  N  ++              E   +      K L   +  +          +L 
Sbjct: 61  KWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTI--ITYPWFQNSSVILF 118

Query: 540 A 540
            
Sbjct: 119 L 119

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 37.3 bits (85), Expect = 0.002
 Identities = 24/169 (14%), Positives = 51/169 (30%), Gaps = 21/169 (12%)

Query: 425 RCLLFGPQNAGKSALLNSFLERPFS----ENYAPTTGEQYAVNVVDQPGGNKKTLILQEI 480
           R ++ G  N GKS LLN  L    +                + +         T  ++  
Sbjct: 2   RMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSE 61

Query: 481 PEEGVKKILSNK--EALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLL 538
             + V+++   +  + +   D+ +FV D+S     +  K                     
Sbjct: 62  TNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKI-------------LERIKNK 108

Query: 539 IASKDDLKPYTMAVQDSARVTQELGIEPP-IPVSMKSKD-LNNVFSRII 585
                  K   +   +   +  +LG +   + +S    + L  +   I 
Sbjct: 109 RYLVVINKVDVVEKINEEEIKNKLGTDRHMVKISALKGEGLEKLEESIY 157

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 37.4 bits (85), Expect = 0.002
 Identities = 34/174 (19%), Positives = 62/174 (35%), Gaps = 16/174 (9%)

Query: 428 LFGPQNAGKSALLNSFL-ERPFSENYAPTT-----GEQYAVNVVDQPGGNKKTLILQEIP 481
             G  N GKS L+     ++         T      E     ++D PG      + +E+ 
Sbjct: 5   FAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPKEVQ 64

Query: 482 EEGVKKILSNKEA-LASCDVTIFVYDSSD----EYSWKRTKELLVEVARLGEDSGYGVPC 536
           E    +I+   E    + DV + V D          W++  E+ ++V          +P 
Sbjct: 65  ERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPT 124

Query: 537 LLIASKDDLKPYTMAVQDSARVTQELGIE----PPIPVSMKSKD-LNNVFSRII 585
           ++  +K D       V +      E+ +       IP+S K  D +  + +RI 
Sbjct: 125 IVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIF 178

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.6 bits (86), Expect = 0.002
 Identities = 16/126 (12%), Positives = 36/126 (28%), Gaps = 9/126 (7%)

Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
           + + LL G   +GKS  L             PT G       +         +  Q    
Sbjct: 2   LVKILLLGAGESGKSTFLKQMR---IIHGQDPTKGIHEYDFEIKNVPFKMVDVGGQRSER 58

Query: 483 EGVKKILSNKEAL----ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLL 538
           +   +   +  ++    +S +    + +         +  +   +  +       V  +L
Sbjct: 59  KRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETI--VNNRVFSNVSIIL 116

Query: 539 IASKDD 544
             +K D
Sbjct: 117 FLNKTD 122

>d1uhka1 a.39.1.5 (A:3-189) Calcium-regulated photoprotein {Jellyfish (Aequorea aequorea), aequorin [TaxId: 168712]} Length = 187

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium-regulated photoprotein
species: Jellyfish (Aequorea aequorea), aequorin [TaxId: 168712]

 Score = 37.3 bits (85), Expect = 0.002
 Identities = 23/192 (11%), Positives = 46/192 (23%), Gaps = 25/192 (13%)

Query: 183 FDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQ----PAEIVGV 238
           FD+         +   K +F   D + +G ++  E+           L      A+    
Sbjct: 5   FDNPRW------IGRHKHMFNFLDVNHNGKISLDEMVYKASDIVINNLGATPEQAKRHKD 58

Query: 239 KRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPV 298
                         +      ++            +      +       +     F  V
Sbjct: 59  AVEAFFGGAGMKYGVETDWPAYIEGWKKLATDELEKY----AKNEPTLIRIWGDALFDIV 114

Query: 299 PTKLSPDQSVELASE---------AVEFLRGIFGLYDIDNDGAVRPAELEDLFLT--APE 347
               +   +++             + E     F + DID  G +   E+    L      
Sbjct: 115 DKDQNGAITLDEWKAYTKAAGIIQSSEDCEETFRVCDIDESGQLDVDEMTRQHLGFWYTM 174

Query: 348 SPWDEAPYKDAA 359
            P  E  Y  A 
Sbjct: 175 DPACEKLYGGAV 186

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

 Score = 36.3 bits (82), Expect = 0.004
 Identities = 24/168 (14%), Positives = 57/168 (33%), Gaps = 17/168 (10%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLI-----LQ 478
            + ++ G  NAGKS+LLN+   R  +         +  +       G    +I      +
Sbjct: 2   MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRE 61

Query: 479 EIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLL 538
              E     I    + +   D  +F+ D +   +                     +P  +
Sbjct: 62  ASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDP----AEIWPEFIARLPAKLPITV 117

Query: 539 IASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVFSRII 585
           + +K D+   T+ +        E+     I +S ++ + ++ + + + 
Sbjct: 118 VRNKADITGETLGM-------SEVNGHALIRLSARTGEGVDVLRNHLK 158

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	643
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	99.95
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	99.94
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	99.94
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	99.94
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	99.94
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	99.94
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	99.94
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	99.94
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	99.94
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	99.94
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	99.94
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	99.93
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	99.93
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	99.93
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	99.93
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	99.93
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	99.93
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	99.93
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	99.93
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	99.93
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	99.93
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.93
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.93
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.92
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.92
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	99.92
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.92
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.92
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.92
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	99.92
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.92
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	99.92
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	99.92
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	99.92
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.92
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.92
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.92
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.92
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.91
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.91
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.91
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.91
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.91
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.9
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.9
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.9
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.9
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.9
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.9
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.89
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.89
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.89
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.89
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.89
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.88
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.88
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.88
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.87
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.86
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.86
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.86
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.84
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.84
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.84
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.83
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.82
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.81
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.8
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.8
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.8
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.8
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.79
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.79
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.79
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.79
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.78
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.78
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.77
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.77
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.77
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.77
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.77
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.76
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.76
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.75
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.75
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.75
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.75
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.73
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.73
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.72
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.7
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.7
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.69
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.68
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.68
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.68
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.68
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.67
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.67
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.66
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.65
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.65
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.65
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.65
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.65
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.63
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.63
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.61
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.59
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.57
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.56
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.56
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.54
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.53
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.5
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.48
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.45
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.41
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	99.4
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.4
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.38
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.34
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.34
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.3
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.29
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.24
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.22
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.22
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	99.21
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.2
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.15
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.12
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.11
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.01
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	98.99
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.99
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	98.96
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	98.93
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	98.89
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	98.89
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	98.84
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	98.82
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	98.81
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	98.76
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	98.7
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	98.7
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	98.66
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	98.63
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	98.58
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	98.55
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	98.54
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.18
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.81
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.58
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	97.31
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	97.26
d1j8yf2	211	GTPase domain of the signal sequence recognition p	97.26
d1vmaa2	213	GTPase domain of the signal recognition particle r	97.24
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.17
d1vmaa2	213	GTPase domain of the signal recognition particle r	97.15
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.1
d1ls1a2	207	GTPase domain of the signal sequence recognition p	96.92
d2scpa_	174	Sarcoplasmic calcium-binding protein {Sandworm (Ne	96.76
d1okkd2	207	GTPase domain of the signal recognition particle r	96.74
d1j8yf2	211	GTPase domain of the signal sequence recognition p	96.74
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	96.69
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	96.65
d1okkd2	207	GTPase domain of the signal recognition particle r	96.65
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	96.64
d1ls1a2	207	GTPase domain of the signal sequence recognition p	96.6
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	96.54
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	96.34
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.19
d2sasa_	185	Sarcoplasmic calcium-binding protein {Amphioxus (B	96.19
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	96.14
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	96.13
d1exra_	146	Calmodulin {Ciliate (Paramecium tetraurelia) [TaxI	96.11
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	96.05
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	95.79
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	95.79
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	95.78
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	95.75
d1wdcb_	142	Myosin Essential Chain {Bay scallop (Aequipecten i	95.72
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	95.71
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	95.63
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	95.61
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	95.59
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	95.56
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	95.55
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	95.53
d1ctda_	34	Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	95.5
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	95.46
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	95.37
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	95.36
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	95.35
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	95.27
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	95.24
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	95.24
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	95.23
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	95.21
d1topa_	162	Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	95.18
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	95.16
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	95.16
d1dtla_	156	Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	95.13
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	95.13
d1nyaa_	176	Calerythrin {Saccharopolyspora erythraea [TaxId: 1	95.1
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	95.07
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	95.06
d1hqva_	181	Apoptosis-linked protein alg-2 {Mouse (Mus musculu	95.05
d2obha1	141	Calmodulin {Human (Homo sapiens) [TaxId: 9606]}	95.0
d2hf5a1	33	Troponin C {Human (Homo sapiens), cardiac isoform	94.99
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	94.98
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	94.95
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	94.91
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	94.9
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	94.9
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	94.9
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	94.83
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	94.81
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	94.8
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	94.79
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	94.74
d1uhka1	187	Calcium-regulated photoprotein {Jellyfish (Aequore	94.68
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	94.55
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	94.54
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	94.54
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	94.53
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	94.51
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	94.49
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	94.45
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	94.41
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	94.39
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	94.37
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	94.34
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	94.33
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	94.32
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	94.28
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	94.26
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	94.25
d1m45a_	146	Myosin Light Chain Mlc1p {Baker's yeast (Saccharom	94.22
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	94.16
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	94.13
d1qv0a_	189	Calcium-regulated photoprotein {Hydrozoa (Obelia l	94.12
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	94.1
d2awna2	232	Maltose transport protein MalK, N-terminal domain	94.1
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	94.08
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	94.06
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	94.06
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	94.04
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	94.0
d1auib_	165	Calcineurin regulatory subunit (B-chain) {Human (H	93.99
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	93.99
d2awna2	232	Maltose transport protein MalK, N-terminal domain	93.96
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	93.92
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	93.91
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	93.89
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	93.82
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	93.8
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	93.78
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	93.78
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	93.77
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	93.74
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	93.73
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	93.68
d2mysb_	145	Myosin Essential Chain {Chicken (Gallus gallus) [T	93.66
d1y1xa_	182	Programmed cell death 6 protein-like protein {Leis	93.66
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	93.65
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	93.63
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	93.63
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	93.62
d2mysc_	145	Myosin Regulatory Chain {Chicken (Gallus gallus) [	93.58
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	93.57
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	93.54
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	93.54
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	93.54
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	93.53
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	93.48
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	93.47
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	93.44
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	93.44
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	93.36
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	93.36
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	93.33
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	93.27
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	93.25
d1g2912	240	Maltose transport protein MalK, N-terminal domain	93.22
d1wdcc_	152	Myosin Regulatory Chain {Bay scallop (Aequipecten	93.22
d1g2912	240	Maltose transport protein MalK, N-terminal domain	93.21
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	93.2
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	93.17
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	93.16
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	93.12
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	93.11
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	93.08
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	93.08
d2opoa1	81	Polcalcin Che a 3 {Pigweed (Chenopodium album) [Ta	93.06
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	93.05
d1k94a_	165	Grancalcin {Human (Homo sapiens) [TaxId: 9606]}	93.03
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	93.03
d1lkja_	146	Calmodulin {Baker's yeast (Saccharomyces cerevisia	93.01
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	93.0
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	93.0
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	92.99
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	92.96
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	92.95
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	92.88
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	92.87
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	92.87
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	92.68
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	92.56
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	92.51
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	92.49
d1jfja_	134	EHCABP {Entamoeba (Entamoeba histolytica) [TaxId:	92.44
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	92.42
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	92.36
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	92.36
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	92.35
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	92.3
d2pq3a1	73	Calmodulin {Rattus norvegicus [TaxId: 10116]}	92.25
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	92.13
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	92.09
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	92.07
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	92.03
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	91.9
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	91.85
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	91.79
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	91.77
d1avsa_	81	Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	91.74
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	91.74
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	91.68
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	91.65
d2pq3a1	73	Calmodulin {Rattus norvegicus [TaxId: 10116]}	91.61
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	91.6
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	91.44
d1qxpa2	188	Calpain large subunit, C-terminal domain (domain I	91.34
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	91.32
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	91.3
d1s6ia_	182	Calcium-dependent protein kinase sk5 CLD {Soybean	91.26
d1alva_	173	Calpain small (regulatory) subunit (domain VI) {Pi	91.12
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	91.05
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	91.05
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	91.04
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	91.03
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	90.9
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	90.86
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	90.84
d1c07a_	95	Eps15 {Human (Homo sapiens) [TaxId: 9606]}	90.83
d1ggwa_	140	Cdc4p {Fission yeast (Schizosaccharomyces pombe) [	90.75
d1f54a_	77	Calmodulin {Baker's yeast (Saccharomyces cerevisia	90.75
d1iq3a_	110	Pob1 {Human (Homo sapiens) [TaxId: 9606]}	90.73
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	90.71
d1fw4a_	65	Calmodulin {Cow (Bos taurus) [TaxId: 9913]}	90.46
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	90.4
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	90.24
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	90.23
d1juoa_	172	Sorcin {Human (Homo sapiens) [TaxId: 9606]}	90.07
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	90.05
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	90.05
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	89.83
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	89.76
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	89.69
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	89.69
d1pvaa_	109	Parvalbumin {Pike (Esox lucius) [TaxId: 8010]}	89.62
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	89.52
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	89.4
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	89.28
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	89.26
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	89.26
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	89.22
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	89.19
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	89.09
d1wrka1	82	Troponin C {Human (Homo sapiens), cardiac isoform	89.09
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	89.08
d1df0a1	186	Calpain large subunit, C-terminal domain (domain I	88.91
d1qxpa2	188	Calpain large subunit, C-terminal domain (domain I	88.85
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	88.76
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	88.68
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	88.67
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	88.65
d1c7va_	68	Calcium vector protein {Amphioxus (Branchiostoma l	88.59
d1tiza_	67	Calmodulin-related protein T21P5.17 {Thale cress (	88.54
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	88.35
d1f54a_	77	Calmodulin {Baker's yeast (Saccharomyces cerevisia	88.33
d2fcea1	61	Calmodulin {Cow (Bos taurus) [TaxId: 9913]}	88.24
d1k94a_	165	Grancalcin {Human (Homo sapiens) [TaxId: 9606]}	88.08
d1wrka1	82	Troponin C {Human (Homo sapiens), cardiac isoform	87.99
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	87.94
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	87.93
d1fi6a_	92	Reps1 {Mouse (Mus musculus) [TaxId: 10090]}	87.87
d1hqva_	181	Apoptosis-linked protein alg-2 {Mouse (Mus musculu	87.73
d1tiza_	67	Calmodulin-related protein T21P5.17 {Thale cress (	87.64
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	87.57
d1c7va_	68	Calcium vector protein {Amphioxus (Branchiostoma l	87.5
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	87.41
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	87.31
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	87.18
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	87.16
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	87.13
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	87.1
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	86.95
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	86.87
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	86.87
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	86.74
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	86.68
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	86.49
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	86.19
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	86.15
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	86.13
d1tuea_	205	Replication protein E1 helicase domain {Human papi	85.86
d1fi5a_	81	Troponin C {Chicken (Gallus gallus), cardiac isofo	85.85
d1fi5a_	81	Troponin C {Chicken (Gallus gallus), cardiac isofo	85.78
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	85.63
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	85.58
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	85.58
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	85.56
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	85.51
d1jc2a_	75	Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	85.5
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	85.43
d1s6ca_	178	Kchip1, Kv4 potassium channel-interacting protein	85.27
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	85.26
d1alva_	173	Calpain small (regulatory) subunit (domain VI) {Pi	85.19
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	85.08
d1jc2a_	75	Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	84.97
d2jxca1	95	Eps15 {Human (Homo sapiens) [TaxId: 9606]}	84.97
d1wlza1	83	DJ-1-binding protein, DJBP {Human (Homo sapiens) [	84.96
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	84.93
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	84.71
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	84.65
d1jbaa_	189	Guanylate cyclase activating protein 2, GCAP-2 {Co	84.59
d1df0a1	186	Calpain large subunit, C-terminal domain (domain I	84.56
d1tuea_	205	Replication protein E1 helicase domain {Human papi	84.55
d1juoa_	172	Sorcin {Human (Homo sapiens) [TaxId: 9606]}	84.51
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	84.43
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	84.4
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	84.34
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	84.32
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	84.27
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	84.27
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	84.26
d1fpwa_	190	Frequenin (neuronal calcium sensor 1) {Baker's yea	84.2
d2pvba_	107	Parvalbumin {Pike (Esox lucius) [TaxId: 8010]}	84.19
d1avsa_	81	Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	84.03
d1bjfa_	181	Neurocalcin {Cow (Bos taurus) [TaxId: 9913]}	84.03
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	84.0
d1wlza1	83	DJ-1-binding protein, DJBP {Human (Homo sapiens) [	83.96
d1y1xa_	182	Programmed cell death 6 protein-like protein {Leis	83.9
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	83.83
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	83.74
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	83.73
d1w7jb1	139	Myosin Essential Chain {Human (Homo sapiens) [TaxI	83.72
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	83.6
d1oqpa_	77	Caltractin (centrin 2) {Green algae (Chlamydomonas	83.52
d1fw4a_	65	Calmodulin {Cow (Bos taurus) [TaxId: 9913]}	83.5
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	83.5
d1c07a_	95	Eps15 {Human (Homo sapiens) [TaxId: 9606]}	83.39
d1oqpa_	77	Caltractin (centrin 2) {Green algae (Chlamydomonas	83.37
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	83.28
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	83.01
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	82.9
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	82.89
d1pvaa_	109	Parvalbumin {Pike (Esox lucius) [TaxId: 8010]}	82.83
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	82.6
d1snla_	99	Nucleobindin 1 (CALNUC) {Human (Homo sapiens) [Tax	82.39
d5pala_	109	Parvalbumin {Leopard shark (Triakis semifasciata)	82.22
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	81.97
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	81.87

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.6e-27  Score=221.36  Aligned_cols=168  Identities=23%  Similarity=0.358  Sum_probs=140.2

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEE
Q 006490            8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV   86 (643)
Q Consensus         8 ~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i   86 (643)
                      .....+||+|+|++|||||||+++|+.+.|...+.++.+... ......+..+.+.+|||+|++.+...+..+++++|++
T Consensus         5 ~~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~~   84 (185)
T d2atxa1           5 PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF   84 (185)
T ss_dssp             CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred             CCCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCceeeeeeEEEeeCCceEEeecccccccchhhhhhhhccccccee
Confidence            456678999999999999999999999998877555444333 4344556678899999999999999999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCC------------CccchhhhhhhHHHHhhcccceEE
Q 006490           87 VLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD------------HNATSLEEVMGPIMQQFREIETCV  154 (643)
Q Consensus        87 l~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~  154 (643)
                      ++|||++++.+++++...|.+.++...++.|+++|+||+|+...            +.+ + .+...+++++++. ..|+
T Consensus        85 ilv~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v-~-~~~~~~~a~~~~~-~~~~  161 (185)
T d2atxa1          85 LICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPI-C-VEQGQKLAKEIGA-CCYV  161 (185)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCC-C-HHHHHHHHHHHTC-SCEE
T ss_pred             eeccccchHHHHHHHHHHHHHHHHhcCCCCCeeEeeeccccccchhhhhhhhhcccccc-c-HHHHHHHHHHcCC-CEEE
Confidence            99999999999999887888888888889999999999998753            222 2 3445677788874 3699


Q ss_pred             EeCcccCCChhHHHHHHHHHHhCC
Q 006490          155 ECSATTMIQVPDVFYYAQKAVLHP  178 (643)
Q Consensus       155 ~~Sa~~~~gi~~l~~~i~~~~~~~  178 (643)
                      +|||++|.||+++|+.+++.++.|
T Consensus       162 E~SAk~~~gv~e~F~~li~~il~P  185 (185)
T d2atxa1         162 ECSALTQKGLKTVFDEAIIAILTP  185 (185)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHCC
T ss_pred             EecCCCCcCHHHHHHHHHHHHcCC
Confidence            999999999999999999988654

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=3.1e-27  Score=216.46  Aligned_cols=160  Identities=16%  Similarity=0.285  Sum_probs=143.3

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEE
Q 006490          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~il  502 (643)
                      .+||+++|++|||||||+|+|+++++...+.||.+.+.........+....+.+||++|++.+..+  ...+++.+|+++
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~--~~~~~~~~~~~i   79 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAI--TKAYYRGAQACV   79 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCC--CHHHHTTCCEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhh--hhhhhccCceEE
Confidence            479999999999999999999999998888899887777777777767778889999999888877  788899999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHHH
Q 006490          503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNNV  580 (643)
Q Consensus       503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l  580 (643)
                      +|||++++.||+.+..|+.++.+...    ++|+++|+||+|+.++++. .+++++++++++++ +++|||++| |++++
T Consensus        80 ~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~iilVgnK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~Sak~g~~v~e~  154 (164)
T d1z2aa1          80 LVFSTTDRESFEAISSWREKVVAEVG----DIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLR-FYRTSVKEDLNVSEV  154 (164)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHC----SCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCE-EEECBTTTTBSSHHH
T ss_pred             EEEeccchhhhhhcccccccccccCC----CceEEEeeccCCcccceeeeehhhHHHHHHcCCE-EEEeccCCCcCHHHH
Confidence            99999999999999999999987665    7999999999999876554 67789999999996 999999999 99999


Q ss_pred             HHHHHHHHh
Q 006490          581 FSRIIWAAE  589 (643)
Q Consensus       581 ~~~l~~~~~  589 (643)
                      |+.|++.+.
T Consensus       155 f~~l~~~~l  163 (164)
T d1z2aa1         155 FKYLAEKHL  163 (164)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999998764

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=5.9e-27  Score=214.53  Aligned_cols=160  Identities=19%  Similarity=0.259  Sum_probs=135.6

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (643)
Q Consensus        12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v   89 (643)
                      .+||+++|++|||||||+++|+++.+...+.++.+...  .........+.+.+|||+|..++......+++++|++++|
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   81 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV   81 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence            37999999999999999999999988777555444333  3344455678899999999999988999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHHH
Q 006490           90 YACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY  169 (643)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  169 (643)
                      ||++++.+++.+. .|++.+.+..+++|++||+||+|+...+.+  ..+.++.++++++  .++++|||++|.||+++|+
T Consensus        82 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~iilVgnK~Dl~~~~~v--~~~~~~~~~~~~~--~~~~e~Sak~g~~v~e~f~  156 (164)
T d1z2aa1          82 FSTTDRESFEAIS-SWREKVVAEVGDIPTALVQNKIDLLDDSCI--KNEEAEGLAKRLK--LRFYRTSVKEDLNVSEVFK  156 (164)
T ss_dssp             EETTCHHHHHTHH-HHHHHHHHHHCSCCEEEEEECGGGGGGCSS--CHHHHHHHHHHHT--CEEEECBTTTTBSSHHHHH
T ss_pred             Eeccchhhhhhcc-cccccccccCCCceEEEeeccCCcccceee--eehhhHHHHHHcC--CEEEEeccCCCcCHHHHHH
Confidence            9999999999987 599999887789999999999999776554  3344677888876  3799999999999999999


Q ss_pred             HHHHHHh
Q 006490          170 YAQKAVL  176 (643)
Q Consensus       170 ~i~~~~~  176 (643)
                      .+++.++
T Consensus       157 ~l~~~~l  163 (164)
T d1z2aa1         157 YLAEKHL  163 (164)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9988765

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.8e-26  Score=211.95  Aligned_cols=162  Identities=19%  Similarity=0.310  Sum_probs=139.3

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i  501 (643)
                      ..+||+|+|.+|||||||+++|+++.+...+.||.........+...+....+.+||++|++.+..+  +..+++++|++
T Consensus         2 y~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~--~~~~~~~~~~~   79 (167)
T d1z08a1           2 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHAL--GPIYYRDSNGA   79 (167)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC---------CCSSTTCSEE
T ss_pred             ceEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceeccc--chhhccCCcee
Confidence            3589999999999999999999999999988899998888888888877888999999999888877  67789999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHH
Q 006490          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNN  579 (643)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~  579 (643)
                      ++|||++++.||+.+..|+..+......   ..|+++|+||+|+..++.+ .++++.++++++++ +++|||++| |+++
T Consensus        80 i~v~d~~~~~Sf~~~~~~~~~~~~~~~~---~~~~ilvgnK~Dl~~~~~v~~~e~~~~a~~~~~~-~~e~Sak~~~~v~e  155 (167)
T d1z08a1          80 ILVYDITDEDSFQKVKNWVKELRKMLGN---EICLCIVGNKIDLEKERHVSIQEAESYAESVGAK-HYHTSAKQNKGIEE  155 (167)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHGG---GSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEEEBTTTTBSHHH
T ss_pred             EEEEeCCchhHHHhhhhhhhhccccccc---ccceeeeccccccccccccchHHHHHHHHHcCCe-EEEEecCCCcCHHH
Confidence            9999999999999999999877655433   6899999999999876554 77889999999997 999999999 9999


Q ss_pred             HHHHHHHHHh
Q 006490          580 VFSRIIWAAE  589 (643)
Q Consensus       580 l~~~l~~~~~  589 (643)
                      +|+.|++.+.
T Consensus       156 ~F~~l~~~i~  165 (167)
T d1z08a1         156 LFLDLCKRMI  165 (167)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999998765

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.1e-26  Score=216.64  Aligned_cols=169  Identities=25%  Similarity=0.345  Sum_probs=139.9

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEE
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il   87 (643)
                      .++.+||+|+|++|||||||+++|+++.|...+.++.+... .....+...+.+.+||++|++.+......+++.+|+++
T Consensus         2 ~p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   81 (183)
T d1mh1a_           2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL   81 (183)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             CceeEEEEEECCCCCCHHHHHHHHHhCCCCcccccceeeceeeeeeccCcceEEEeecccccccchhhhhhcccccceee
Confidence            46779999999999999999999999998888655555443 44556677888999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCcc----------chhhhhhhHHHHhhcccceEEEeC
Q 006490           88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA----------TSLEEVMGPIMQQFREIETCVECS  157 (643)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~S  157 (643)
                      +|||++++.+++++...|...++....++|++||+||+|+...+..          .........++++++. .+|++||
T Consensus        82 lv~d~~~~~sf~~i~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~E~S  160 (183)
T d1mh1a_          82 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA-VKYLECS  160 (183)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTC-SEEEECC
T ss_pred             eeeccchHHHHHHHHHHHHHHHHHhCCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCC-ceEEEcC
Confidence            9999999999999987788888888889999999999998654211          0122334556666654 3799999


Q ss_pred             cccCCChhHHHHHHHHHHhCC
Q 006490          158 ATTMIQVPDVFYYAQKAVLHP  178 (643)
Q Consensus       158 a~~~~gi~~l~~~i~~~~~~~  178 (643)
                      |++|.||+++|+.+++.++.|
T Consensus       161 Ak~~~~V~e~F~~l~~~il~p  181 (183)
T d1mh1a_         161 ALTQRGLKTVFDEAIRAVLCP  181 (183)
T ss_dssp             TTTCTTHHHHHHHHHHHHSCC
T ss_pred             CCCCcCHHHHHHHHHHHHcCC
Confidence            999999999999999998876

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=3.9e-26  Score=209.65  Aligned_cols=162  Identities=21%  Similarity=0.310  Sum_probs=143.0

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i  501 (643)
                      +.+||+|+|.+|||||||+++|+++++...+.+|.............+......+||++|++.+..+  +..+++.+|++
T Consensus         3 k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~--~~~~~~~~~~~   80 (167)
T d1z0ja1           3 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRAL--APMYYRGSAAA   80 (167)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGG--THHHHTTCSEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHH--HHHHHhhccce
Confidence            3589999999999999999999999999988888888777777766656677889999999998888  78899999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHH
Q 006490          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNN  579 (643)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~  579 (643)
                      ++|||++++.+|+.+..|+..+......   +.|+++|+||+|+.+.+.. .++++++++.+++. +++|||++| ||++
T Consensus        81 i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~SAk~~~nV~e  156 (167)
T d1z0ja1          81 IIVYDITKEETFSTLKNWVRELRQHGPP---SIVVAIAGNKCDLTDVREVMERDAKDYADSIHAI-FVETSAKNAININE  156 (167)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCT---TSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCE-EEECBTTTTBSHHH
T ss_pred             EEEeeechhhhhhhHHHhhhhhhhccCC---cceEEEecccchhccccchhHHHHHHHHHHcCCE-EEEEecCCCCCHHH
Confidence            9999999999999999999887766543   7999999999999765544 67889999999986 999999999 9999


Q ss_pred             HHHHHHHHHh
Q 006490          580 VFSRIIWAAE  589 (643)
Q Consensus       580 l~~~l~~~~~  589 (643)
                      +|..|++.+.
T Consensus       157 ~f~~l~~~i~  166 (167)
T d1z0ja1         157 LFIEISRRIP  166 (167)
T ss_dssp             HHHHHHHHCC
T ss_pred             HHHHHHHhCC
Confidence            9999998763

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.6e-26  Score=212.24  Aligned_cols=162  Identities=19%  Similarity=0.304  Sum_probs=141.4

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i  501 (643)
                      ..+||+|+|++|||||||+++|+++.+...+.||....+ ...+..+|....+.+||++|.+.+..+  ...+++.+|++
T Consensus         3 k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~--~~~~~~~~d~~   79 (167)
T d1xtqa1           3 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIF--PQTYSIDINGY   79 (167)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCC--CGGGTSSCCEE
T ss_pred             cceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeccc-ceEEecCcEEEEeeecccccccccccc--cchhhhhhhhh
Confidence            357999999999999999999999999888888888765 355677777778889999999888877  67889999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHH
Q 006490          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNN  579 (643)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~  579 (643)
                      ++|||++++.||+.+..|+..+.+.....  ++|+++|+||+|+...+.+ .++++++++.+++. +++|||++| |+++
T Consensus        80 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~--~~piilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~-~~e~Sak~~~~v~~  156 (167)
T d1xtqa1          80 ILVYSVTSIKSFEVIKVIHGKLLDMVGKV--QIPIMLVGNKKDLHMERVISYEEGKALAESWNAA-FLESSAKENQTAVD  156 (167)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHCSS--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEECCTTCHHHHHH
T ss_pred             hhhcccchhhhhhhhhhhhhhhhhccccc--ccceeeeccccccccccchhHHHHHHHHHHcCCE-EEEEecCCCCCHHH
Confidence            99999999999999999999887765444  7999999999999776554 67888999999987 999999999 9999


Q ss_pred             HHHHHHHHHh
Q 006490          580 VFSRIIWAAE  589 (643)
Q Consensus       580 l~~~l~~~~~  589 (643)
                      +|+.|++.+.
T Consensus       157 ~f~~li~~~~  166 (167)
T d1xtqa1         157 VFRRIILEAE  166 (167)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhc
Confidence            9999988764

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.3e-26  Score=214.99  Aligned_cols=164  Identities=24%  Similarity=0.377  Sum_probs=136.1

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEE
Q 006490           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (643)
Q Consensus        12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~   90 (643)
                      ..||+|+|++|||||||+++|+++.|...+.++.+... .........+.+.+|||+|++.+...++.+++++|++|+||
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~   81 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCF   81 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeeccccccccccceeeeccccCccchhcccchhhcccchhhhhhc
Confidence            36899999999999999999999998877655443332 33455567788999999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCcc----------chhhhhhhHHHHhhcccceEEEeCccc
Q 006490           91 ACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA----------TSLEEVMGPIMQQFREIETCVECSATT  160 (643)
Q Consensus        91 d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~Sa~~  160 (643)
                      |++++.+++.+...|.+.++...++.|++||+||+|+......          ....+....++++++. .+|++|||++
T Consensus        82 d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~-~~~~E~SAkt  160 (177)
T d1kmqa_          82 SIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA-FGYMECSAKT  160 (177)
T ss_dssp             ETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTC-SEEEECCTTT
T ss_pred             ccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCC-cEEEEecCCC
Confidence            9999999999988788888888889999999999999754210          0123445677777764 3799999999


Q ss_pred             CCChhHHHHHHHHHHh
Q 006490          161 MIQVPDVFYYAQKAVL  176 (643)
Q Consensus       161 ~~gi~~l~~~i~~~~~  176 (643)
                      |.||+++|+.+++.++
T Consensus       161 ~~gi~e~F~~i~~~~l  176 (177)
T d1kmqa_         161 KDGVREVFEMATRAAL  176 (177)
T ss_dssp             CTTHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHh
Confidence            9999999999998765

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.2e-26  Score=212.61  Aligned_cols=164  Identities=18%  Similarity=0.331  Sum_probs=142.1

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (643)
                      .+.+||+|+|.+|||||||+++|+++++...+.+|..+ .....+.++|....+.+||++|++.+..+  +..+++.+|+
T Consensus         4 ~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~~~d~~g~~~~~~~--~~~~~~~~~~   80 (173)
T d2fn4a1           4 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIED-SYTKICSVDGIPARLDILDTAGQEEFGAM--REQYMRAGHG   80 (173)
T ss_dssp             SCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCE-EEEEEEEETTEEEEEEEEECCCTTTTSCC--HHHHHHHCSE
T ss_pred             CCeEEEEEECCCCcCHHHHHHHHHhCCCCccccccccc-ceeeEeccCCeeeeeeccccccccccccc--cchhhcccee
Confidence            45699999999999999999999999998888777654 44566777777778889999999988777  7888999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHH
Q 006490          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLN  578 (643)
Q Consensus       501 illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~  578 (643)
                      +++|||++++.||+.+..|+..+.+.....  +.|+++|+||+|+...+.. .+++..+++.++++ +++|||++| |++
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~-~~e~Sak~g~gv~  157 (173)
T d2fn4a1          81 FLLVFAINDRQSFNEVGKLFTQILRVKDRD--DFPVVLVGNKADLESQRQVPRSEASAFGASHHVA-YFEASAKLRLNVD  157 (173)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHTSS--CCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEECBTTTTBSHH
T ss_pred             eeeecccccccccchhhhhhHHHHHHhccC--CCceEEEEEeechhhccccchhhhhHHHHhcCCE-EEEEeCCCCcCHH
Confidence            999999999999999999999887654433  7899999999999775544 67889999999987 999999999 999


Q ss_pred             HHHHHHHHHHhC
Q 006490          579 NVFSRIIWAAEH  590 (643)
Q Consensus       579 ~l~~~l~~~~~~  590 (643)
                      ++|+.|++.+..
T Consensus       158 e~f~~l~~~i~k  169 (173)
T d2fn4a1         158 EAFEQLVRAVRK  169 (173)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998753

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=99.94  E-value=2.6e-26  Score=210.91  Aligned_cols=161  Identities=24%  Similarity=0.405  Sum_probs=138.4

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEE
Q 006490          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~il  502 (643)
                      .+||+|+|++|||||||+++|+++++...+.||.++.+. ..+..+|....+.+||++|++.+..+  ...+++.+|+++
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~-~~~~~~~~~~~l~i~d~~g~~~~~~~--~~~~~~~~~~~i   80 (168)
T d1u8za_           4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAI--RDNYFRSGEGFL   80 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCC---CHHH--HHHHHHHCSEEE
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCCcccCCccccccc-cccccccccccccccccccccchhhh--hhhcccccceeE
Confidence            479999999999999999999999998888888887654 44556766778889999999888777  778899999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHHH
Q 006490          503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNNV  580 (643)
Q Consensus       503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l  580 (643)
                      +|||++++.+|+.+..|+.++.+.....  +.|+++|+||+|+.+.+++ .++++.+++.+++. +++|||++| |++++
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~--~~piiivgnK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~Sak~g~gv~e~  157 (168)
T d1u8za_          81 CVFSITEMESFAATADFREQILRVKEDE--NVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVN-YVETSAKTRANVDKV  157 (168)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCCT--TSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCE-EEECCTTTCTTHHHH
T ss_pred             EEeeccchhhhhhHHHHHHHHHHhhCCC--CCcEEEEeccccccccccccHHHHHHHHHHcCCe-EEEEcCCCCcCHHHH
Confidence            9999999999999999999988765444  8999999999999776544 67889999999987 999999999 99999


Q ss_pred             HHHHHHHHh
Q 006490          581 FSRIIWAAE  589 (643)
Q Consensus       581 ~~~l~~~~~  589 (643)
                      |+.|++.+.
T Consensus       158 f~~l~~~i~  166 (168)
T d1u8za_         158 FFDLMREIR  166 (168)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998765

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3.9e-26  Score=209.08  Aligned_cols=160  Identities=20%  Similarity=0.364  Sum_probs=142.5

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill  503 (643)
                      +||+|+|.+|||||||+++|+++++...+.++++...........+......+||++|++.+...  +..++..+|++++
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~--~~~~~~~~~~~il   78 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSL--IPSYIRDSAAAVV   78 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGG--HHHHHTTCSEEEE
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccc--hHHHhhccceEEE
Confidence            58999999999999999999999999888888887777777777767788899999999988877  7889999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHHHH
Q 006490          504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNNVF  581 (643)
Q Consensus       504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l~  581 (643)
                      |||++++.||+.+..|+..+......   +.|+++|+||+|+.+.+.. .++...+++.+++. +++|||++| |++++|
T Consensus        79 v~d~~~~~s~~~i~~~~~~~~~~~~~---~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~-~~e~SAk~g~~v~e~f  154 (164)
T d1yzqa1          79 VYDITNVNSFQQTTKWIDDVRTERGS---DVIIMLVGNKTDLADKRQVSIEEGERKAKELNVM-FIETSAKAGYNVKQLF  154 (164)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTT---SSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCE-EEECCTTTCTTHHHHH
T ss_pred             eeccccccchhhhHhhHHHHHHhcCC---CceEEEEecccchhhhhhhhHHHHHHHHHHcCCE-EEEecCCCCcCHHHHH
Confidence            99999999999999999888766543   7999999999999765444 67889999999987 999999999 999999


Q ss_pred             HHHHHHHh
Q 006490          582 SRIIWAAE  589 (643)
Q Consensus       582 ~~l~~~~~  589 (643)
                      +.|++.+.
T Consensus       155 ~~i~~~l~  162 (164)
T d1yzqa1         155 RRVAAALP  162 (164)
T ss_dssp             HHHHHHSC
T ss_pred             HHHHHhhC
Confidence            99999764

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.3e-26  Score=213.08  Aligned_cols=159  Identities=19%  Similarity=0.180  Sum_probs=119.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEEC
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYAC   92 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~   92 (643)
                      +||+|+|++|||||||+++|.+..+....++..........++...+.+.+|||+|++.+...+..+++.+|++|+|||+
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~d~   81 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSV   81 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC---------CEEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEEET
T ss_pred             eEEEEECCCCcCHHHHHHHHhCCccCCcCCeeeeeecceeeccccccceeeeecccccccceecccchhhhhhhceeccc
Confidence            79999999999999999999998765544443333334455667788999999999999999999999999999999999


Q ss_pred             CCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHHHH
Q 006490           93 NQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYY  170 (643)
Q Consensus        93 ~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  170 (643)
                      +++.+++.+. .|...+...  ..++|+++|+||+|+...+.+  .....+.+++.++  .++++|||++|.||+++|+.
T Consensus        82 t~~~s~~~~~-~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v--~~~~~~~~~~~~~--~~~~e~Sak~~~~v~~~f~~  156 (168)
T d2gjsa1          82 TDKGSFEKAS-ELRVQLRRARQTDDVPIILVGNKSDLVRSREV--SVDEGRACAVVFD--CKFIETSAALHHNVQALFEG  156 (168)
T ss_dssp             TCHHHHHHHH-HHHHHHHHHCC--CCCEEEEEECTTCGGGCCS--CHHHHHHHHHHHT--SEEEECBTTTTBSHHHHHHH
T ss_pred             cccccccccc-cccchhhcccccccceEEEeecccchhhhcch--hHHHHHHHHHhcC--CEEEEEeCCCCcCHHHHHHH
Confidence            9999999998 488888653  357899999999999876554  3344577778876  37999999999999999999


Q ss_pred             HHHHHh
Q 006490          171 AQKAVL  176 (643)
Q Consensus       171 i~~~~~  176 (643)
                      +++.+.
T Consensus       157 l~~~i~  162 (168)
T d2gjsa1         157 VVRQIR  162 (168)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            987654

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=4.9e-26  Score=208.79  Aligned_cols=161  Identities=19%  Similarity=0.364  Sum_probs=143.3

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i  501 (643)
                      ..+||+|+|.+|||||||+++|+++++...+.+++..++....+..+|....+.+||++|++.+..+  +...++.+|++
T Consensus         3 y~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~--~~~~~~~~d~~   80 (166)
T d1z0fa1           3 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAV--TRSYYRGAAGA   80 (166)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHH--HHHHHHTCSEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHH--HHHHhcCCcEE
Confidence            3589999999999999999999999999888888888888888888877778999999999988887  78889999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHH
Q 006490          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNN  579 (643)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~  579 (643)
                      ++|||++++.||+....|+..+.+....   ..|+++|+||+|+...... .++++.+++.++++ +++|||++| |+++
T Consensus        81 ilv~d~~~~~s~~~~~~~~~~~~~~~~~---~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~-~~e~Saktg~~v~e  156 (166)
T d1z0fa1          81 LMVYDITRRSTYNHLSSWLTDARNLTNP---NTVIILIGNKADLEAQRDVTYEEAKQFAEENGLL-FLEASAKTGENVED  156 (166)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCT---TCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCE-EEECCTTTCTTHHH
T ss_pred             EEEeccCchHHHHHHHHHHHHHHhhccc---cceEEEEcccccchhhcccHHHHHHHHHHHcCCE-EEEEeCCCCCCHHH
Confidence            9999999999999999999888766543   7899999999998765544 56889999999986 999999999 9999


Q ss_pred             HHHHHHHHH
Q 006490          580 VFSRIIWAA  588 (643)
Q Consensus       580 l~~~l~~~~  588 (643)
                      +|+.|++.+
T Consensus       157 ~f~~i~~~i  165 (166)
T d1z0fa1         157 AFLEAAKKI  165 (166)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999998864

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.2e-26  Score=211.36  Aligned_cols=163  Identities=23%  Similarity=0.302  Sum_probs=136.0

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEE
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (643)
                      ++.+||+|+|++|||||||+++|+.+.|...+.++.+... .....+...+.+.+||++|+..+...++.+++.+|++|+
T Consensus         1 mr~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   80 (167)
T d1c1ya_           1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL   80 (167)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccccceeEEeeeeEEEeccccccCcccccccccccccccceeEE
Confidence            4679999999999999999999999999887665544333 444566778999999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHh--cCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhH
Q 006490           89 TYACNQQSTLSRLSSYWLPELRR--LEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (643)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~--~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  166 (643)
                      |||++++.+++.+.. |...+.+  ..++.|++||+||+|+......  ..+....+++++... ++++|||++|.||++
T Consensus        81 v~d~~~~~sf~~~~~-~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~--~~~~~~~~~~~~~~~-~~~e~Sak~g~gv~e  156 (167)
T d1c1ya_          81 VYSITAQSTFNDLQD-LREQILRVKDTEDVPMILVGNKCDLEDERVV--GKEQGQNLARQWCNC-AFLESSAKSKINVNE  156 (167)
T ss_dssp             EEETTCHHHHHTHHH-HHHHHHHHHCCSCCCEEEEEECTTCGGGCCS--CHHHHHHHHHHTTSC-EEEECBTTTTBSHHH
T ss_pred             eeeccchhhhHhHHH-HHHHHHHhcCCCCCeEEEEEEecCccccccc--chhHHHHHHHHhCCC-EEEEEcCCCCcCHHH
Confidence            999999999999985 7776644  2468999999999999876554  344456677776543 799999999999999


Q ss_pred             HHHHHHHHHh
Q 006490          167 VFYYAQKAVL  176 (643)
Q Consensus       167 l~~~i~~~~~  176 (643)
                      +|+++++.+.
T Consensus       157 ~F~~l~~~i~  166 (167)
T d1c1ya_         157 IFYDLVRQIN  166 (167)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHhc
Confidence            9999998764

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3.9e-26  Score=210.51  Aligned_cols=162  Identities=21%  Similarity=0.319  Sum_probs=142.9

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i  501 (643)
                      ..+||+|+|.+|||||||+++|+++.+...+.++++.++....+..++....+.+||++|++.+..+  +..+++++|++
T Consensus         4 ~~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~--~~~~~~~~~~~   81 (171)
T d2ew1a1           4 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSI--TQSYYRSANAL   81 (171)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHH--HGGGSTTCSEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHH--HHHHHhccceE
Confidence            3589999999999999999999999998888888888888888888877778889999999998887  77889999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHH
Q 006490          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNN  579 (643)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~  579 (643)
                      ++|+|++++.+++....|+..+.+....   +.|+++|+||+|+.+.... .++++++++..+++ +++|||++| ||++
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~~~ilvgnK~D~~~~~~v~~~~~~~~~~~~~~~-~~~~SAktg~gV~e  157 (171)
T d2ew1a1          82 ILTYDITCEESFRCLPEWLREIEQYASN---KVITVLVGNKIDLAERREVSQQRAEEFSEAQDMY-YLETSAKESDNVEK  157 (171)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCT---TCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCC-EEECCTTTCTTHHH
T ss_pred             EEeeecccchhhhhhhhhhhhhcccccc---cccEEEEEeecccccccchhhhHHHHHHHhCCCE-EEEEccCCCCCHHH
Confidence            9999999999999999999888765433   6899999999998765544 66788999999997 999999999 9999


Q ss_pred             HHHHHHHHHh
Q 006490          580 VFSRIIWAAE  589 (643)
Q Consensus       580 l~~~l~~~~~  589 (643)
                      +|..|++.+.
T Consensus       158 ~f~~l~~~l~  167 (171)
T d2ew1a1         158 LFLDLACRLI  167 (171)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999887654

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.4e-26  Score=212.02  Aligned_cols=163  Identities=19%  Similarity=0.340  Sum_probs=138.6

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i  501 (643)
                      +.+||+++|.+|||||||+++|+++.+...+.||.++.+. .....++....+.+||++|++.+...  ...+++.+|++
T Consensus         1 n~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~~-~~~~~~~~~~~l~~~d~~g~~~~~~~--~~~~~~~a~~~   77 (171)
T d2erxa1           1 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSHQFPAM--QRLSISKGHAF   77 (171)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEETTEEEEEEEEECCSCSSCHHH--HHHHHHHCSEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeeccc-cceeeccccceecccccccccccccc--ccccccceeEE
Confidence            3589999999999999999999999998888888886543 34556666678889999999988877  77889999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHH
Q 006490          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNN  579 (643)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~  579 (643)
                      ++|||++++.+|+.+..|+..+.+..... .++|+++|+||+|+...+++ .++++++++.++++ +++|||++| |+++
T Consensus        78 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~-~~~piilVgnK~Dl~~~~~v~~~e~~~~~~~~~~~-~~e~Sak~~~~v~e  155 (171)
T d2erxa1          78 ILVYSITSRQSLEELKPIYEQICEIKGDV-ESIPIMLVGNKCDESPSREVQSSEAEALARTWKCA-FMETSAKLNHNVKE  155 (171)
T ss_dssp             EEEEETTCHHHHHTTHHHHHHHHHHHC----CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCE-EEECBTTTTBSHHH
T ss_pred             EEEeecccccchhcccchhhhhhhhhccC-CCCcEEEEeecccccccccccHHHHHHHHHHcCCe-EEEEcCCCCcCHHH
Confidence            99999999999999999988876643321 17899999999999776544 67889999999987 999999999 9999


Q ss_pred             HHHHHHHHHh
Q 006490          580 VFSRIIWAAE  589 (643)
Q Consensus       580 l~~~l~~~~~  589 (643)
                      +|+.|++.+.
T Consensus       156 ~f~~l~~~~~  165 (171)
T d2erxa1         156 LFQELLNLEK  165 (171)
T ss_dssp             HHHHHHHTCC
T ss_pred             HHHHHHHHHH
Confidence            9999998765

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=4.3e-26  Score=209.55  Aligned_cols=160  Identities=21%  Similarity=0.322  Sum_probs=124.6

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEE
Q 006490          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~il  502 (643)
                      .+||+++|.+|||||||+++|.+..+... .++... .....+.++|....+.+||++|++.+..+  +..+++.||+++
T Consensus         1 ifKi~lvG~~~vGKTsLi~~~~~~~~~~~-~~~~~~-~~~~~i~~~~~~~~l~i~D~~g~e~~~~~--~~~~~~~~d~~i   76 (168)
T d2gjsa1           1 VYKVLLLGAPGVGKSALARIFGGVEDGPE-AEAAGH-TYDRSIVVDGEEASLMVYDIWEQDGGRWL--PGHCMAMGDAYV   76 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHTC----------CE-EEEEEEEETTEEEEEEEEECC-------C--HHHHHTSCSEEE
T ss_pred             CeEEEEECCCCcCHHHHHHHHhCCccCCc-CCeeee-eecceeeccccccceeeeeccccccccee--cccchhhhhhhc
Confidence            37999999999999999999999875432 244444 33455667767778889999999998887  788999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHHH
Q 006490          503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNNV  580 (643)
Q Consensus       503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l  580 (643)
                      +|||++++.||+.+..|+..+.......  ++|+++|+||+|+...+++ ..+.+++++.++++ +++|||++| |++++
T Consensus        77 lv~d~t~~~s~~~~~~~~~~i~~~~~~~--~~piilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~Sak~~~~v~~~  153 (168)
T d2gjsa1          77 IVYSVTDKGSFEKASELRVQLRRARQTD--DVPIILVGNKSDLVRSREVSVDEGRACAVVFDCK-FIETSAALHHNVQAL  153 (168)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHCC----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTSE-EEECBTTTTBSHHHH
T ss_pred             eeccccccccccccccccchhhcccccc--cceEEEeecccchhhhcchhHHHHHHHHHhcCCE-EEEEeCCCCcCHHHH
Confidence            9999999999999999999987765443  7899999999999876554 67888999999997 999999999 99999


Q ss_pred             HHHHHHHHh
Q 006490          581 FSRIIWAAE  589 (643)
Q Consensus       581 ~~~l~~~~~  589 (643)
                      |+.|++.+.
T Consensus       154 f~~l~~~i~  162 (168)
T d2gjsa1         154 FEGVVRQIR  162 (168)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998664

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3.5e-26  Score=214.84  Aligned_cols=171  Identities=23%  Similarity=0.381  Sum_probs=140.5

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEE
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (643)
                      |+.+||+|+|++|||||||+++|+.+.|..++.++.+... ......+..+.+.+|||+|++++...+..+++.+|++++
T Consensus         1 m~~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il   80 (191)
T d2ngra_           1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV   80 (191)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred             CCceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeecceeEeeCCceeeeeccccccchhhhhhhhhcccccceeec
Confidence            3468999999999999999999999998877655444433 344455667889999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCc----------cchhhhhhhHHHHhhcccceEEEeCc
Q 006490           89 TYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN----------ATSLEEVMGPIMQQFREIETCVECSA  158 (643)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~Sa  158 (643)
                      |||++++.|++++...|.+.+....++.|+++|+||+|+.....          .....+..+.++++++.. +|++|||
T Consensus        81 v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~e~SA  159 (191)
T d2ngra_          81 CFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAV-KYVECSA  159 (191)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCS-CEEECCT
T ss_pred             ccccchHHHHHHHHHHHHHHHhhcCCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCC-eEEEEeC
Confidence            99999999999998778888888778999999999999864311          001344556777777643 6999999


Q ss_pred             ccCCChhHHHHHHHHHHhCCCCC
Q 006490          159 TTMIQVPDVFYYAQKAVLHPTAP  181 (643)
Q Consensus       159 ~~~~gi~~l~~~i~~~~~~~~~~  181 (643)
                      ++|.||+++|+.+++.++.+..+
T Consensus       160 k~~~~V~e~f~~l~~~~~~~~~~  182 (191)
T d2ngra_         160 LTQKGLKNVFDEAILAALEPPEP  182 (191)
T ss_dssp             TTCTTHHHHHHHHHHHHTSCCST
T ss_pred             CCCcCHHHHHHHHHHHHhcCcCC
Confidence            99999999999999988776544

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=5.5e-26  Score=208.70  Aligned_cols=162  Identities=22%  Similarity=0.347  Sum_probs=139.9

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i  501 (643)
                      +.+||+++|++|||||||+++|+++.+...+.||..+ .....+..++....+.+||++|++.+...  ...++++||++
T Consensus         2 k~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~~~d~~g~~~~~~~--~~~~~~~a~~~   78 (167)
T d1kaoa_           2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIED-FYRKEIEVDSSPSVLEILDTAGTEQFASM--RDLYIKNGQGF   78 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCE-EEEEEEEETTEEEEEEEEECCCTTCCHHH--HHHHHHHCSEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCceee-eeeeeeecCcceEeeccccCCCccccccc--hHHHhhcccce
Confidence            3589999999999999999999999998888787775 34455666767778889999999888777  77889999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHH
Q 006490          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNN  579 (643)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~  579 (643)
                      ++|||++++.+|..+..|...+.......  ++|++||+||+|+...+.. .+++..+++.++++ +++|||++| |+++
T Consensus        79 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~--~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~-~~e~Sak~g~~i~e  155 (167)
T d1kaoa_          79 ILVYSLVNQQSFQDIKPMRDQIIRVKRYE--KVPVILVGNKVDLESEREVSSSEGRALAEEWGCP-FMETSAKSKTMVDE  155 (167)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHTTTS--CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSC-EEEECTTCHHHHHH
T ss_pred             eeeeeecchhhhhhhhchhhhhhhhccCC--CCCEEEEEEccchhhcccchHHHHHHHHHHcCCe-EEEECCCCCcCHHH
Confidence            99999999999999999999887765443  7999999999999765444 67888999999987 999999999 9999


Q ss_pred             HHHHHHHHHh
Q 006490          580 VFSRIIWAAE  589 (643)
Q Consensus       580 l~~~l~~~~~  589 (643)
                      +|+.|++.+.
T Consensus       156 ~f~~i~~~i~  165 (167)
T d1kaoa_         156 LFAEIVRQMN  165 (167)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHc
Confidence            9999998764

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.1e-25  Score=206.47  Aligned_cols=161  Identities=20%  Similarity=0.372  Sum_probs=141.5

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEE
Q 006490          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~il  502 (643)
                      .+||+++|++|||||||+|+|+++.+...+.+|.+..+..... ..+....+.+||+.|.+.+...  ...+++.+++++
T Consensus         3 e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~d~~~~~~~~~~--~~~~~~~~~~~i   79 (166)
T d1ctqa_           3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAM--RDQYMRTGEGFL   79 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEE-ETTEEEEEEEEEECCCGGGHHH--HHHHHHHCSEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeecccee-eeceeeeeeeeeccCccccccc--hhhhhhcccccc
Confidence            4899999999999999999999999988887888876665544 4546778889999999888776  778899999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC-CHHHHH
Q 006490          503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNVF  581 (643)
Q Consensus       503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l~  581 (643)
                      +|||++++.+|+.+..|+..+.+.....  ++|+++|+||+|+.......++++.+++.++++ +++|||++| |++++|
T Consensus        80 iv~d~~~~~s~~~~~~~~~~i~~~~~~~--~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~e~Sak~g~gi~e~f  156 (166)
T d1ctqa_          80 CVFAINNTKSFEDIHQYREQIKRVKDSD--DVPMVLVGNKCDLAARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF  156 (166)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTCS--SCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCC-EEECCTTTCTTHHHHH
T ss_pred             eeecccccccHHHHHHHHHHHHHhcCCC--CCeEEEEecccccccccccHHHHHHHHHHhCCe-EEEEcCCCCcCHHHHH
Confidence            9999999999999999999988765544  789999999999987666678889999999996 999999999 999999


Q ss_pred             HHHHHHHh
Q 006490          582 SRIIWAAE  589 (643)
Q Consensus       582 ~~l~~~~~  589 (643)
                      ..|++.+.
T Consensus       157 ~~i~~~i~  164 (166)
T d1ctqa_         157 YTLVREIR  164 (166)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998775

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.4e-26  Score=211.08  Aligned_cols=162  Identities=21%  Similarity=0.276  Sum_probs=135.3

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEE
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (643)
                      ++++||+|+|++|||||||+++|+++.+...+.++.+... ....++...+.+.+||++|.+.+......+++.+|++++
T Consensus         1 mk~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~il   80 (167)
T d1kaoa_           1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL   80 (167)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeeeeeeeeecCcceEeeccccCCCccccccchHHHhhcccceee
Confidence            5689999999999999999999999998887666554433 444556667889999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhH
Q 006490           89 TYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (643)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  166 (643)
                      |||++++.+++.+.. |...+...  .+++|++||+||+|+...+..  ..+....+++.++  .++++|||++|.||++
T Consensus        81 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~e~Sak~g~~i~e  155 (167)
T d1kaoa_          81 VYSLVNQQSFQDIKP-MRDQIIRVKRYEKVPVILVGNKVDLESEREV--SSSEGRALAEEWG--CPFMETSAKSKTMVDE  155 (167)
T ss_dssp             EEETTCHHHHHHHHH-HHHHHHHHTTTSCCCEEEEEECGGGGGGCCS--CHHHHHHHHHHHT--SCEEEECTTCHHHHHH
T ss_pred             eeeecchhhhhhhhc-hhhhhhhhccCCCCCEEEEEEccchhhcccc--hHHHHHHHHHHcC--CeEEEECCCCCcCHHH
Confidence            999999999999985 77776543  357999999999998766554  3344567777776  3699999999999999


Q ss_pred             HHHHHHHHHh
Q 006490          167 VFYYAQKAVL  176 (643)
Q Consensus       167 l~~~i~~~~~  176 (643)
                      +|+.+++.+.
T Consensus       156 ~f~~i~~~i~  165 (167)
T d1kaoa_         156 LFAEIVRQMN  165 (167)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHc
Confidence            9999998764

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=4.2e-26  Score=210.70  Aligned_cols=163  Identities=18%  Similarity=0.242  Sum_probs=135.3

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEE
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il   87 (643)
                      ..+.+||+|+|++|||||||+++|+++.+...++++..... ....+++..+.+.+|||+|.+++...+..+++.+|++|
T Consensus         3 ~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~i   82 (173)
T d2fn4a1           3 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFL   82 (173)
T ss_dssp             SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEE
T ss_pred             CCCeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEeccCCeeeeeeccccccccccccccchhhccceeee
Confidence            34568999999999999999999999998887666544332 34455566788999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChh
Q 006490           88 LTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP  165 (643)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  165 (643)
                      +|||++++.+++.+.. |...+.+.  ..+.|++||+||+|+...+..  ..+....++++++  .++++|||++|.||+
T Consensus        83 ~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~e~Sak~g~gv~  157 (173)
T d2fn4a1          83 LVFAINDRQSFNEVGK-LFTQILRVKDRDDFPVVLVGNKADLESQRQV--PRSEASAFGASHH--VAYFEASAKLRLNVD  157 (173)
T ss_dssp             EEEETTCHHHHHHHHH-HHHHHHHHHTSSCCCEEEEEECGGGGGGCCS--CHHHHHHHHHHTT--CEEEECBTTTTBSHH
T ss_pred             eecccccccccchhhh-hhHHHHHHhccCCCceEEEEEeechhhcccc--chhhhhHHHHhcC--CEEEEEeCCCCcCHH
Confidence            9999999999999884 87776542  458899999999998765544  3345677777776  379999999999999


Q ss_pred             HHHHHHHHHHh
Q 006490          166 DVFYYAQKAVL  176 (643)
Q Consensus       166 ~l~~~i~~~~~  176 (643)
                      ++|+.+++.+.
T Consensus       158 e~f~~l~~~i~  168 (173)
T d2fn4a1         158 EAFEQLVRAVR  168 (173)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998764

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.93  E-value=1.1e-25  Score=207.01  Aligned_cols=162  Identities=19%  Similarity=0.347  Sum_probs=140.9

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i  501 (643)
                      ..+||+++|.+|||||||+++|+++++...+.++.+.+.....+...+....+.+||++|++.+..+  +..+++.||++
T Consensus         4 ~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~--~~~~~~~ad~~   81 (169)
T d3raba_           4 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTI--TTAYYRGAMGF   81 (169)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHH--HHTTTTTCCEE
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHH--HHHHHhcCCEE
Confidence            3589999999999999999999999988888888877777777777766678889999999998887  77789999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHH
Q 006490          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNN  579 (643)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~  579 (643)
                      |+|||++++.++.....|+..+......   ..|+++|+||+|+.....+ .++++.+++.++++ +++|||++| |+++
T Consensus        82 ilv~d~~~~~s~~~~~~~~~~~~~~~~~---~~~iivv~nK~D~~~~~~v~~~~~~~~~~~~~~~-~~e~Sak~g~gv~e  157 (169)
T d3raba_          82 ILMYDITNEESFNAVQDWSTQIKTYSWD---NAQVLLVGNKCDMEDERVVSSERGRQLADHLGFE-FFEASAKDNINVKQ  157 (169)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHCCS---CCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEECBTTTTBSHHH
T ss_pred             EEEEECccchhhhhhhhhhhhhhcccCC---cceEEEEEeecccccccccchhhhHHHHHHcCCE-EEEecCCCCcCHHH
Confidence            9999999999999999888777655432   7899999999998776544 67788999999987 999999999 9999


Q ss_pred             HHHHHHHHHh
Q 006490          580 VFSRIIWAAE  589 (643)
Q Consensus       580 l~~~l~~~~~  589 (643)
                      +|++|++.+.
T Consensus       158 ~f~~l~~~i~  167 (169)
T d3raba_         158 TFERLVDVIC  167 (169)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999999765

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.2e-25  Score=210.00  Aligned_cols=164  Identities=23%  Similarity=0.361  Sum_probs=137.4

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (643)
                      ...+||+|+|.+|||||||+++|+++.+...+.||+.+ .....+...|....+.+||++|++.+..+  +..+++++|+
T Consensus         7 ~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~-~~~~~~~~~~~~~~l~i~D~~g~e~~~~~--~~~~~~~a~~   83 (185)
T d2atxa1           7 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFD-HYAVSVTVGGKQYLLGLYDTAGQEDYDRL--RPLSYPMTDV   83 (185)
T ss_dssp             EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCC-CEEEEEESSSCEEEEEEECCCCSSSSTTT--GGGGCTTCSE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCceee-eeeEEEeeCCceEEeecccccccchhhhh--hhhcccccce
Confidence            45689999999999999999999999998888888875 44566677777778889999999988877  7889999999


Q ss_pred             EEEEEeCCChhhHHHHHHHH-HHHHHhcCCCCCCCcEEEEEeCCCCCCcc-------------ccHHHHHHHHHHhCCCC
Q 006490          501 TIFVYDSSDEYSWKRTKELL-VEVARLGEDSGYGVPCLLIASKDDLKPYT-------------MAVQDSARVTQELGIEP  566 (643)
Q Consensus       501 illv~D~s~~~s~~~~~~~~-~~i~~~~~~~~~~~pvilv~NK~Dl~~~~-------------~~~~~~~~~~~~~~~~~  566 (643)
                      +++|||++++.||+....|. ..+.....    ++|+++|+||+|+.+..             ...+++.++++.++..+
T Consensus        84 ~ilv~d~t~~~Sf~~~~~~~~~~~~~~~~----~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~  159 (185)
T d2atxa1          84 FLICFSVVNPASFQNVKEEWVPELKEYAP----NVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACC  159 (185)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHST----TCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSC
T ss_pred             eeeccccchHHHHHHHHHHHHHHHHhcCC----CCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCCE
Confidence            99999999999999877654 44444433    79999999999997521             12567888999999666


Q ss_pred             cEEeeeccC-CHHHHHHHHHHHHhCC
Q 006490          567 PIPVSMKSK-DLNNVFSRIIWAAEHP  591 (643)
Q Consensus       567 ~~~vSa~~g-~i~~l~~~l~~~~~~~  591 (643)
                      +++|||++| ||+++|+.+++.+..|
T Consensus       160 ~~E~SAk~~~gv~e~F~~li~~il~P  185 (185)
T d2atxa1         160 YVECSALTQKGLKTVFDEAIIAILTP  185 (185)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHHCC
T ss_pred             EEEecCCCCcCHHHHHHHHHHHHcCC
Confidence            999999999 9999999999987654

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=1.2e-25  Score=206.63  Aligned_cols=161  Identities=19%  Similarity=0.348  Sum_probs=141.0

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEE
Q 006490          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~il  502 (643)
                      .+||+++|++|||||||+++++++.+...+.||..+.+ ...+..++....+.+||++|++.+..+  +..+++.+|+++
T Consensus         4 t~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~--~~~~~~~~~~~l   80 (169)
T d1x1ra1           4 TYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAM--REQYMRTGDGFL   80 (169)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSS--HHHHHHHCSEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeecc-ccccccccccccccccccccccccccc--hhhhhhhccEEE
Confidence            58999999999999999999999998888888877654 445666767788889999999998887  788999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC--CHHH
Q 006490          503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK--DLNN  579 (643)
Q Consensus       503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g--~i~~  579 (643)
                      +|||++++.||+.+..|+..+.+.....  +.|+|+|+||+|+...+.+ .+++.++++.+++. +++||||++  ||++
T Consensus        81 lv~d~~d~~Sf~~~~~~~~~i~~~~~~~--~~p~ilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~-~~e~Sak~~~~nV~~  157 (169)
T d1x1ra1          81 IVYSVTDKASFEHVDRFHQLILRVKDRE--SFPMILVANKVDLMHLRKVTRDQGKEMATKYNIP-YIETSAKDPPLNVDK  157 (169)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTSS--CCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCC-EEEEBCSSSCBSHHH
T ss_pred             EecccccchhhhccchhhHHHHhhcccc--CccEEEEecccchhhhceeehhhHHHHHHHcCCE-EEEEcCCCCCcCHHH
Confidence            9999999999999999999987765444  7999999999999876554 67899999999986 999999975  8999


Q ss_pred             HHHHHHHHHh
Q 006490          580 VFSRIIWAAE  589 (643)
Q Consensus       580 l~~~l~~~~~  589 (643)
                      +|..|++.+.
T Consensus       158 ~F~~l~~~i~  167 (169)
T d1x1ra1         158 TFHDLVRVIR  167 (169)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998764

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=4.6e-26  Score=209.20  Aligned_cols=162  Identities=21%  Similarity=0.322  Sum_probs=134.6

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeee--CCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEE
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRL--PPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il   87 (643)
                      ++++||+|+|++|||||||+++|+++.|...+.++......  ..........+.+|||+|++.+......+++.+|++|
T Consensus         2 ~k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (167)
T d1z0ja1           2 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI   81 (167)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceE
Confidence            46799999999999999999999999998886665555442  2333345667889999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHh-cCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhH
Q 006490           88 LTYACNQQSTLSRLSSYWLPELRR-LEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (643)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~l~~-~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  166 (643)
                      +|||++++.+++.+.. |...+.. ..++.|+++|+||+|+...+.+  ..+..+.+++.++  .++++|||++|.||++
T Consensus        82 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v--~~~~~~~~~~~~~--~~~~e~SAk~~~nV~e  156 (167)
T d1z0ja1          82 IVYDITKEETFSTLKN-WVRELRQHGPPSIVVAIAGNKCDLTDVREV--MERDAKDYADSIH--AIFVETSAKNAININE  156 (167)
T ss_dssp             EEEETTCHHHHHHHHH-HHHHHHHHSCTTSEEEEEEECTTCGGGCCS--CHHHHHHHHHHTT--CEEEECBTTTTBSHHH
T ss_pred             EEeeechhhhhhhHHH-hhhhhhhccCCcceEEEecccchhccccch--hHHHHHHHHHHcC--CEEEEEecCCCCCHHH
Confidence            9999999999999985 6666654 4568999999999999766555  3455677888876  3799999999999999


Q ss_pred             HHHHHHHHHh
Q 006490          167 VFYYAQKAVL  176 (643)
Q Consensus       167 l~~~i~~~~~  176 (643)
                      +|.++++.+.
T Consensus       157 ~f~~l~~~i~  166 (167)
T d1z0ja1         157 LFIEISRRIP  166 (167)
T ss_dssp             HHHHHHHHCC
T ss_pred             HHHHHHHhCC
Confidence            9999998763

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.1e-25  Score=207.39  Aligned_cols=162  Identities=18%  Similarity=0.330  Sum_probs=136.9

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i  501 (643)
                      +.+||+|+|.+|||||||+++++++.+...+.||..+ .....+..+|......+||++|.+.+...  ...+++.||++
T Consensus         4 ~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~~~~~d~~g~~~~~~~--~~~~~~~~~~~   80 (171)
T d2erya1           4 EKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIED-SYTKQCVIDDRAARLDILDTAGQEEFGAM--REQYMRTGEGF   80 (171)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCE-EEEEEEEETTEEEEEEEEECC----CCHH--HHHHHHHCSEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCCcccCccccc-ceeeeeeeccccccccccccccccccccc--ccccccccceE
Confidence            4589999999999999999999999988888788775 44555666767778889999999888776  67888999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHH
Q 006490          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNN  579 (643)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~  579 (643)
                      ++|||.+++.||+.+..|+..+.+.....  ..|+|+|+||+|+...+.. .++++++++.++++ +++|||++| ||++
T Consensus        81 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~--~~p~ilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~Sak~~~~i~e  157 (171)
T d2erya1          81 LLVFSVTDRGSFEEIYKFQRQILRVKDRD--EFPMILIGNKADLDHQRQVTQEEGQQLARQLKVT-YMEASAKIRMNVDQ  157 (171)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTSS--CCSEEEEEECTTCTTSCSSCHHHHHHHHHHTTCE-EEECBTTTTBSHHH
T ss_pred             EEeeccccccchhhHHHHhHHHHhhcccC--CCCEEEEEeccchhhhccchHHHHHHHHHHcCCE-EEEEcCCCCcCHHH
Confidence            99999999999999999998887665444  7899999999999765444 67889999999997 999999999 9999


Q ss_pred             HHHHHHHHHh
Q 006490          580 VFSRIIWAAE  589 (643)
Q Consensus       580 l~~~l~~~~~  589 (643)
                      +|..|++.+.
T Consensus       158 ~f~~l~~~i~  167 (171)
T d2erya1         158 AFHELVRVIR  167 (171)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999875

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=99.93  E-value=6.6e-26  Score=208.22  Aligned_cols=161  Identities=20%  Similarity=0.308  Sum_probs=132.6

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe-eeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (643)
Q Consensus        11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v   89 (643)
                      +-+||+|+|++|||||||+++|+++.|...+.++.+.. .....++...+.+.+||++|.+++......+++.+|++++|
T Consensus         3 ~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv   82 (168)
T d1u8za_           3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV   82 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCccccccccccccccccccccccccccccchhhhhhhcccccceeEEE
Confidence            45799999999999999999999999887765554433 34445667788999999999999988899999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHH
Q 006490           90 YACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV  167 (643)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  167 (643)
                      ||++++.+++.+. .|++.+.+.  .+++|+++|+||+|+...+.+  ..+..+.+++.++  .++++|||++|.||+++
T Consensus        83 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v--~~~~~~~~~~~~~--~~~~e~Sak~g~gv~e~  157 (168)
T d1u8za_          83 FSITEMESFAATA-DFREQILRVKEDENVPFLLVGNKSDLEDKRQV--SVEEAKNRADQWN--VNYVETSAKTRANVDKV  157 (168)
T ss_dssp             EETTCHHHHHHHH-HHHHHHHHHHCCTTSCEEEEEECGGGGGGCCS--CHHHHHHHHHHHT--CEEEECCTTTCTTHHHH
T ss_pred             eeccchhhhhhHH-HHHHHHHHhhCCCCCcEEEEeccccccccccc--cHHHHHHHHHHcC--CeEEEEcCCCCcCHHHH
Confidence            9999999999998 588888654  468999999999998766554  3445677888876  37999999999999999


Q ss_pred             HHHHHHHHh
Q 006490          168 FYYAQKAVL  176 (643)
Q Consensus       168 ~~~i~~~~~  176 (643)
                      |+++++.+.
T Consensus       158 f~~l~~~i~  166 (168)
T d1u8za_         158 FFDLMREIR  166 (168)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998764

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=4.5e-26  Score=210.16  Aligned_cols=160  Identities=20%  Similarity=0.236  Sum_probs=131.4

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (643)
Q Consensus        11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v   89 (643)
                      +++||+|+|++|||||||+++|+++.|...+.++.+... .....+...+.+.+|||+|.+.+......+++.+|++++|
T Consensus         1 n~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv   80 (171)
T d2erxa1           1 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV   80 (171)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeeccccceeeccccceeccccccccccccccccccccceeEEEEE
Confidence            478999999999999999999999998877655544332 3345556678899999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHh---cCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhH
Q 006490           90 YACNQQSTLSRLSSYWLPELRR---LEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (643)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~---~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  166 (643)
                      ||++++.+++.+.. |...+.+   ...++|++||+||+|+...+.+ . .+..+.+++.++  .++++|||++|.||++
T Consensus        81 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v-~-~~e~~~~~~~~~--~~~~e~Sak~~~~v~e  155 (171)
T d2erxa1          81 YSITSRQSLEELKP-IYEQICEIKGDVESIPIMLVGNKCDESPSREV-Q-SSEAEALARTWK--CAFMETSAKLNHNVKE  155 (171)
T ss_dssp             EETTCHHHHHTTHH-HHHHHHHHHC---CCCEEEEEECGGGGGGCCS-C-HHHHHHHHHHHT--CEEEECBTTTTBSHHH
T ss_pred             eecccccchhcccc-hhhhhhhhhccCCCCcEEEEeecccccccccc-c-HHHHHHHHHHcC--CeEEEEcCCCCcCHHH
Confidence            99999999999985 7666643   2357999999999999766655 3 345677888876  3799999999999999


Q ss_pred             HHHHHHHHH
Q 006490          167 VFYYAQKAV  175 (643)
Q Consensus       167 l~~~i~~~~  175 (643)
                      +|+.+++.+
T Consensus       156 ~f~~l~~~~  164 (171)
T d2erxa1         156 LFQELLNLE  164 (171)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHHHH
Confidence            999988754

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=6.3e-26  Score=207.62  Aligned_cols=159  Identities=18%  Similarity=0.247  Sum_probs=132.0

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEE
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~   90 (643)
                      +||+|+|++|||||||+++|+++++...+.++.+...  .....+...+.+.+|||+|++.+...+..+++.+|++++||
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~   80 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY   80 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence            6999999999999999999999998777555544443  33344456788999999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHHh-cCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHHH
Q 006490           91 ACNQQSTLSRLSSYWLPELRR-LEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY  169 (643)
Q Consensus        91 d~~~~~s~~~~~~~~~~~l~~-~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  169 (643)
                      |++++.+++.+.. |+..+.. ..++.|++||+||+|+......  ..+....+++.++  .++++|||++|.||+++|+
T Consensus        81 d~~~~~s~~~i~~-~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~e~SAk~g~~v~e~f~  155 (164)
T d1yzqa1          81 DITNVNSFQQTTK-WIDDVRTERGSDVIIMLVGNKTDLADKRQV--SIEEGERKAKELN--VMFIETSAKAGYNVKQLFR  155 (164)
T ss_dssp             ETTCHHHHHTHHH-HHHHHHHHHTTSSEEEEEEECTTCGGGCCS--CHHHHHHHHHHTT--CEEEECCTTTCTTHHHHHH
T ss_pred             ccccccchhhhHh-hHHHHHHhcCCCceEEEEecccchhhhhhh--hHHHHHHHHHHcC--CEEEEecCCCCcCHHHHHH
Confidence            9999999999985 6666654 4578999999999999766554  3345667777776  3699999999999999999


Q ss_pred             HHHHHHh
Q 006490          170 YAQKAVL  176 (643)
Q Consensus       170 ~i~~~~~  176 (643)
                      ++++.++
T Consensus       156 ~i~~~l~  162 (164)
T d1yzqa1         156 RVAAALP  162 (164)
T ss_dssp             HHHHHSC
T ss_pred             HHHHhhC
Confidence            9998764

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.5e-25  Score=207.05  Aligned_cols=161  Identities=19%  Similarity=0.323  Sum_probs=138.1

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEE
Q 006490          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~il  502 (643)
                      .+||+|+|++|||||||+++++++++...+.++.............+....+.+||++|++.+..+  +...++.+|+++
T Consensus         3 ~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~--~~~~~~~~d~~i   80 (173)
T d2a5ja1           3 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSI--TRSYYRGAAGAL   80 (173)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCC--CHHHHTTCSEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhH--HHHHhhccCEEE
Confidence            489999999999999999999999998888887777777777777766778889999999998887  888999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHHH
Q 006490          503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNNV  580 (643)
Q Consensus       503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l  580 (643)
                      +|||++++.+|+.+..|+..+.+....   ++|+++|+||+|+...+.. .++...+++..+++ +++|||++| |++++
T Consensus        81 lv~d~~~~~sf~~~~~~~~~~~~~~~~---~~piilv~nK~D~~~~~~~~~~~~~~~a~~~~~~-~~e~Sa~tg~~V~e~  156 (173)
T d2a5ja1          81 LVYDITRRETFNHLTSWLEDARQHSSS---NMVIMLIGNKSDLESRRDVKREEGEAFAREHGLI-FMETSAKTACNVEEA  156 (173)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCT---TCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEEECTTTCTTHHHH
T ss_pred             EEEeecChHHHHhHHHHHHHHHHhCCC---CCeEEEEecCCchhhhhhhHHHHHHHHHHHcCCE-EEEecCCCCCCHHHH
Confidence            999999999999999999888776543   7999999999998765444 67899999999987 999999999 99999


Q ss_pred             HHHHHHHHh
Q 006490          581 FSRIIWAAE  589 (643)
Q Consensus       581 ~~~l~~~~~  589 (643)
                      |..+++.+.
T Consensus       157 f~~i~~~i~  165 (173)
T d2a5ja1         157 FINTAKEIY  165 (173)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999764

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.9e-26  Score=212.26  Aligned_cols=159  Identities=18%  Similarity=0.293  Sum_probs=136.3

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEE
Q 006490          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~il  502 (643)
                      .+||+++|++|||||||+++|+++++...+.||.+.++....+...+....+.+||++|++.+..+  +..+++.+|+++
T Consensus         3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~--~~~~~~~~~~~i   80 (170)
T d1i2ma_           3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGL--RDGYYIQAQCAI   80 (170)
T ss_dssp             EEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSC--GGGGTTTCCEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccceecccccccccccccccccccccccccccccee--cchhcccccchh
Confidence            379999999999999999999999998888889888888888888878888999999999988887  778899999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC-CHHHHH
Q 006490          503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNVF  581 (643)
Q Consensus       503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l~  581 (643)
                      +|||++++.||+.+..|+..+.+...    ++|+++|+||+|+...... ++...+++..+++ +++|||++| |++++|
T Consensus        81 lv~d~~~~~Sf~~~~~~~~~~~~~~~----~~piilvgnK~Dl~~~~~~-~~~~~~~~~~~~~-~~e~Sak~~~~v~e~f  154 (170)
T d1i2ma_          81 IMFDVTSRVTYKNVPNWHRDLVRVCE----NIPIVLCGNKVDIKDRKVK-AKSIVFHRKKNLQ-YYDISAKSNYNFEKPF  154 (170)
T ss_dssp             EEEETTSGGGGTTHHHHHHHHHHHHC----SCCEEEEEECCCCSCSCCT-TTSHHHHSSCSSE-EEEEBTTTTBTTTHHH
T ss_pred             hccccccccccchhHHHHHHHhhccC----CCceeeecchhhhhhhhhh-hHHHHHHHHcCCE-EEEEeCCCCCCHHHHH
Confidence            99999999999999999999887654    7999999999999775543 3445677778886 999999999 999999


Q ss_pred             HHHHHHHh
Q 006490          582 SRIIWAAE  589 (643)
Q Consensus       582 ~~l~~~~~  589 (643)
                      ++|++.+.
T Consensus       155 ~~l~~~l~  162 (170)
T d1i2ma_         155 LWLARKLI  162 (170)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHc
Confidence            99999775

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.5e-25  Score=205.80  Aligned_cols=162  Identities=20%  Similarity=0.332  Sum_probs=138.9

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEE
Q 006490          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~il  502 (643)
                      .+||+++|.+|||||||+++|+++++...+.||....+. ..+...+......+||++|++.+..+  +..+++.+|+++
T Consensus         3 ~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~~~~~d~~g~~~~~~~--~~~~~~~~~~~i   79 (167)
T d1c1ya_           3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQFTAM--RDLYMKNGQGFA   79 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEESSSCEEEEEEEEECSSCSSTTH--HHHHHHHCSEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccccc-eeEEeeeeEEEeccccccCccccccc--ccccccccceeE
Confidence            589999999999999999999999999888888776554 44566767788899999999988877  778999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHHH
Q 006490          503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNNV  580 (643)
Q Consensus       503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l  580 (643)
                      +|||++++.||+.+..|+..+.+.....  +.|+++|+||+|+...... .++...++++++..++++|||++| |++++
T Consensus        80 lv~d~~~~~sf~~~~~~~~~~~~~~~~~--~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~  157 (167)
T d1c1ya_          80 LVYSITAQSTFNDLQDLREQILRVKDTE--DVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEI  157 (167)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHCCS--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHH
T ss_pred             EeeeccchhhhHhHHHHHHHHHHhcCCC--CCeEEEEEEecCcccccccchhHHHHHHHHhCCCEEEEEcCCCCcCHHHH
Confidence            9999999999999999999887754433  7899999999999876544 567778888865445999999999 99999


Q ss_pred             HHHHHHHHh
Q 006490          581 FSRIIWAAE  589 (643)
Q Consensus       581 ~~~l~~~~~  589 (643)
                      |+.|++.+.
T Consensus       158 F~~l~~~i~  166 (167)
T d1c1ya_         158 FYDLVRQIN  166 (167)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHhc
Confidence            999998764

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=6e-26  Score=208.40  Aligned_cols=161  Identities=18%  Similarity=0.281  Sum_probs=128.6

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (643)
Q Consensus        12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v   89 (643)
                      .+||+|+|++|||||||+++|+++.|...+.++.+...  .........+.+.+|||+|..++...+..+++++|++|+|
T Consensus         3 ~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v   82 (167)
T d1z08a1           3 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILV   82 (167)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEEE
Confidence            47999999999999999999999999887666555444  3444556678899999999999988899999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHh-cCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHH
Q 006490           90 YACNQQSTLSRLSSYWLPELRR-LEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (643)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~-~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  168 (643)
                      ||++++.+++.+.. |+..+.. .....|++||+||+|+...+.+ . .+.++.++++++  .++++|||++|.||+++|
T Consensus        83 ~d~~~~~Sf~~~~~-~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v-~-~~e~~~~a~~~~--~~~~e~Sak~~~~v~e~F  157 (167)
T d1z08a1          83 YDITDEDSFQKVKN-WVKELRKMLGNEICLCIVGNKIDLEKERHV-S-IQEAESYAESVG--AKHYHTSAKQNKGIEELF  157 (167)
T ss_dssp             EETTCHHHHHHHHH-HHHHHHHHHGGGSEEEEEEECGGGGGGCCS-C-HHHHHHHHHHTT--CEEEEEBTTTTBSHHHHH
T ss_pred             EeCCchhHHHhhhh-hhhhcccccccccceeeecccccccccccc-c-hHHHHHHHHHcC--CeEEEEecCCCcCHHHHH
Confidence            99999999999985 7766654 3457899999999999876665 3 445677888876  379999999999999999


Q ss_pred             HHHHHHHhC
Q 006490          169 YYAQKAVLH  177 (643)
Q Consensus       169 ~~i~~~~~~  177 (643)
                      +++++.++.
T Consensus       158 ~~l~~~i~~  166 (167)
T d1z08a1         158 LDLCKRMIE  166 (167)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHhh
Confidence            999988753

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.93  E-value=7e-26  Score=208.37  Aligned_cols=161  Identities=15%  Similarity=0.211  Sum_probs=131.8

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (643)
Q Consensus        12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v   89 (643)
                      -+||+++|++|||||||+++|+++.+.....++.+...  .........+.+.+|||||++++..+++.+++++|++|+|
T Consensus         5 ~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~ilv   84 (169)
T d3raba_           5 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILM   84 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            47999999999999999999999988777655554333  3344445578899999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHh-cCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHH
Q 006490           90 YACNQQSTLSRLSSYWLPELRR-LEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (643)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~-~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  168 (643)
                      ||++++.++..+.. |...++. ...+.|+++|+||+|+.....+  ..+..+.+++..+  .++++|||++|.||+++|
T Consensus        85 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~iivv~nK~D~~~~~~v--~~~~~~~~~~~~~--~~~~e~Sak~g~gv~e~f  159 (169)
T d3raba_          85 YDITNEESFNAVQD-WSTQIKTYSWDNAQVLLVGNKCDMEDERVV--SSERGRQLADHLG--FEFFEASAKDNINVKQTF  159 (169)
T ss_dssp             EETTCHHHHHTHHH-HHHHHHHHCCSCCEEEEEEECTTCGGGCCS--CHHHHHHHHHHHT--CEEEECBTTTTBSHHHHH
T ss_pred             EECccchhhhhhhh-hhhhhhcccCCcceEEEEEeeccccccccc--chhhhHHHHHHcC--CEEEEecCCCCcCHHHHH
Confidence            99999999999885 5555544 4567899999999998766554  3344567777776  379999999999999999


Q ss_pred             HHHHHHHhC
Q 006490          169 YYAQKAVLH  177 (643)
Q Consensus       169 ~~i~~~~~~  177 (643)
                      +++++.+..
T Consensus       160 ~~l~~~i~e  168 (169)
T d3raba_         160 ERLVDVICE  168 (169)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHhh
Confidence            999987653

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=6.1e-26  Score=209.22  Aligned_cols=160  Identities=19%  Similarity=0.272  Sum_probs=131.0

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (643)
Q Consensus        12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v   89 (643)
                      .+||+|+|++|||||||+++|+++.+.....++.+...  ....+....+.+.+|||||++.+...++.+++++|++++|
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i~v   84 (171)
T d2ew1a1           5 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILT   84 (171)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceEEEe
Confidence            47999999999999999999999998777555444333  3344556678899999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHH-HhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHH
Q 006490           90 YACNQQSTLSRLSSYWLPEL-RRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (643)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l-~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  168 (643)
                      ||++++.+++.+.. |...+ +....+.|++||+||+|+.....+  ..+.++.+++..+  .++++|||++|.||+++|
T Consensus        85 ~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~ilvgnK~D~~~~~~v--~~~~~~~~~~~~~--~~~~~~SAktg~gV~e~f  159 (171)
T d2ew1a1          85 YDITCEESFRCLPE-WLREIEQYASNKVITVLVGNKIDLAERREV--SQQRAEEFSEAQD--MYYLETSAKESDNVEKLF  159 (171)
T ss_dssp             EETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECGGGGGGCSS--CHHHHHHHHHHHT--CCEEECCTTTCTTHHHHH
T ss_pred             eecccchhhhhhhh-hhhhhcccccccccEEEEEeecccccccch--hhhHHHHHHHhCC--CEEEEEccCCCCCHHHHH
Confidence            99999999999986 66665 444567999999999998765544  3344567777776  369999999999999999


Q ss_pred             HHHHHHHh
Q 006490          169 YYAQKAVL  176 (643)
Q Consensus       169 ~~i~~~~~  176 (643)
                      .++++.++
T Consensus       160 ~~l~~~l~  167 (171)
T d2ew1a1         160 LDLACRLI  167 (171)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99887764

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=9.3e-26  Score=206.91  Aligned_cols=159  Identities=23%  Similarity=0.301  Sum_probs=131.9

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (643)
Q Consensus        12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v   89 (643)
                      -+||+|+|++|||||||+++|+++.+....+++.....  ....++...+.+.+|||+|++.+...+..+++++|++|+|
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~ilv   83 (166)
T d1z0fa1           4 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   83 (166)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEEEE
Confidence            37999999999999999999999998877655444433  3345556678999999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHh-cCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHH
Q 006490           90 YACNQQSTLSRLSSYWLPELRR-LEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (643)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~-~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  168 (643)
                      ||++++.+++.+.. |...+.+ .....|+++|+||+|+......  ..+..+.+++..+  .++++|||++|.||+++|
T Consensus        84 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~e~Saktg~~v~e~f  158 (166)
T d1z0fa1          84 YDITRRSTYNHLSS-WLTDARNLTNPNTVIILIGNKADLEAQRDV--TYEEAKQFAEENG--LLFLEASAKTGENVEDAF  158 (166)
T ss_dssp             EETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECTTCGGGCCS--CHHHHHHHHHHTT--CEEEECCTTTCTTHHHHH
T ss_pred             eccCchHHHHHHHH-HHHHHHhhccccceEEEEcccccchhhccc--HHHHHHHHHHHcC--CEEEEEeCCCCCCHHHHH
Confidence            99999999999885 6666654 4568899999999998765544  3445677777776  379999999999999999


Q ss_pred             HHHHHHH
Q 006490          169 YYAQKAV  175 (643)
Q Consensus       169 ~~i~~~~  175 (643)
                      +.+++.+
T Consensus       159 ~~i~~~i  165 (166)
T d1z0fa1         159 LEAAKKI  165 (166)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9998875

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=1.5e-25  Score=206.10  Aligned_cols=162  Identities=17%  Similarity=0.250  Sum_probs=135.9

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe-eeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEE
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (643)
                      .+.+||+++|++|||||||+++++++.+.+.+.++.+.. .....++...+.+.+||++|.+.+....+.+++++|++++
T Consensus         2 ~pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ll   81 (169)
T d1x1ra1           2 LPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLI   81 (169)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEE
T ss_pred             CCcEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeeccccccccccccccccccccccccccccchhhhhhhccEEEE
Confidence            467999999999999999999999999877755544433 2444566778899999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCC-Chh
Q 006490           89 TYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMI-QVP  165 (643)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-gi~  165 (643)
                      |||++++.+++.+.. |...+.+.  ..+.|+|+|+||+|+...+.+ . .+.+..++++++  .++++|||+++. ||+
T Consensus        82 v~d~~d~~Sf~~~~~-~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v-~-~e~~~~~~~~~~--~~~~e~Sak~~~~nV~  156 (169)
T d1x1ra1          82 VYSVTDKASFEHVDR-FHQLILRVKDRESFPMILVANKVDLMHLRKV-T-RDQGKEMATKYN--IPYIETSAKDPPLNVD  156 (169)
T ss_dssp             EEETTCHHHHHTHHH-HHHHHHHHHTSSCCCEEEEEECTTCSTTCCS-C-HHHHHHHHHHHT--CCEEEEBCSSSCBSHH
T ss_pred             ecccccchhhhccch-hhHHHHhhccccCccEEEEecccchhhhcee-e-hhhHHHHHHHcC--CEEEEEcCCCCCcCHH
Confidence            999999999999885 88887543  347999999999999887665 3 345678888887  379999999875 999


Q ss_pred             HHHHHHHHHHh
Q 006490          166 DVFYYAQKAVL  176 (643)
Q Consensus       166 ~l~~~i~~~~~  176 (643)
                      ++|+.+++.+.
T Consensus       157 ~~F~~l~~~i~  167 (169)
T d1x1ra1         157 KTFHDLVRVIR  167 (169)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988764

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=7.8e-26  Score=207.65  Aligned_cols=161  Identities=17%  Similarity=0.194  Sum_probs=133.5

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-eeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEE
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (643)
                      .+.+||+|+|++|||||||+++|+++.|...+.++.+. ......+++..+.+.+|||+|.+.+..+...+++.+|++|+
T Consensus         2 ~k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~il   81 (167)
T d1xtqa1           2 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL   81 (167)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEEE
T ss_pred             CcceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceecccceEEecCcEEEEeeecccccccccccccchhhhhhhhhhh
Confidence            35689999999999999999999999987775544433 33444566777889999999999998888999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhH
Q 006490           89 TYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (643)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  166 (643)
                      |||++++.+++.+.. |...+.+.  ..++|++||+||+|+...+.+ + .+..+.++++++  .+|++|||++|.||++
T Consensus        82 v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v-~-~~~~~~~a~~~~--~~~~e~Sak~~~~v~~  156 (167)
T d1xtqa1          82 VYSVTSIKSFEVIKV-IHGKLLDMVGKVQIPIMLVGNKKDLHMERVI-S-YEEGKALAESWN--AAFLESSAKENQTAVD  156 (167)
T ss_dssp             EEETTCHHHHHHHHH-HHHHHHHHHCSSCCCEEEEEECTTCGGGCCS-C-HHHHHHHHHHHT--CEEEECCTTCHHHHHH
T ss_pred             hcccchhhhhhhhhh-hhhhhhhcccccccceeeeccccccccccch-h-HHHHHHHHHHcC--CEEEEEecCCCCCHHH
Confidence            999999999999984 87777543  357999999999999776655 3 345577888887  3699999999999999


Q ss_pred             HHHHHHHHH
Q 006490          167 VFYYAQKAV  175 (643)
Q Consensus       167 l~~~i~~~~  175 (643)
                      +|+.+++.+
T Consensus       157 ~f~~li~~~  165 (167)
T d1xtqa1         157 VFRRIILEA  165 (167)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999988765

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.1e-25  Score=205.64  Aligned_cols=162  Identities=19%  Similarity=0.277  Sum_probs=130.8

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEE
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (643)
                      ...+||+|+|++|||||||+++|+++.|...+.++.+... ....+++..+.+.+|||+|..++....+.+++.+|++++
T Consensus         3 ~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   82 (171)
T d2erya1           3 QEKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLL   82 (171)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccccceeeeeeecccccccccccccccccccccccccccccceEEE
Confidence            3458999999999999999999999998877655444333 444556667899999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhH
Q 006490           89 TYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (643)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  166 (643)
                      |||++++.+++.+.. |...+.+.  ..+.|+|||+||+|+...+.+  ..+....++++++  .++++|||++|.||++
T Consensus        83 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v--~~~~~~~~~~~~~--~~~~e~Sak~~~~i~e  157 (171)
T d2erya1          83 VFSVTDRGSFEEIYK-FQRQILRVKDRDEFPMILIGNKADLDHQRQV--TQEEGQQLARQLK--VTYMEASAKIRMNVDQ  157 (171)
T ss_dssp             EEETTCHHHHHTHHH-HHHHHHHHHTSSCCSEEEEEECTTCTTSCSS--CHHHHHHHHHHTT--CEEEECBTTTTBSHHH
T ss_pred             eeccccccchhhHHH-HhHHHHhhcccCCCCEEEEEeccchhhhccc--hHHHHHHHHHHcC--CEEEEEcCCCCcCHHH
Confidence            999999999999985 77666433  357999999999999776655  3445678888876  3799999999999999


Q ss_pred             HHHHHHHHHh
Q 006490          167 VFYYAQKAVL  176 (643)
Q Consensus       167 l~~~i~~~~~  176 (643)
                      +|+.+++.+.
T Consensus       158 ~f~~l~~~i~  167 (171)
T d2erya1         158 AFHELVRVIR  167 (171)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988753

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=3.6e-25  Score=204.78  Aligned_cols=162  Identities=19%  Similarity=0.345  Sum_probs=138.1

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i  501 (643)
                      .-+||+|+|++|||||||+++|+++.+...+.++++.......+...+....+.+||++|++.+..+  +...++.+|++
T Consensus         3 ~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~--~~~~~~~~~~~   80 (175)
T d2f9la1           3 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRI--TSAYYRGAVGA   80 (175)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCC--CHHHHTTCSEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHH--HHHHhhccCeE
Confidence            3589999999999999999999999998888887777777777888877778889999999988887  78889999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHH
Q 006490          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNN  579 (643)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~  579 (643)
                      ++|||.+++.||.....|+..+.+....   ++|+++|+||+|+.+.+.. .+....+.+..+.+ +++|||++| |+++
T Consensus        81 i~v~d~~~~~S~~~~~~~~~~i~~~~~~---~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~-~~e~Sa~~g~~i~e  156 (175)
T d2f9la1          81 LLVYDIAKHLTYENVERWLKELRDHADS---NIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLS-FIETSALDSTNVEE  156 (175)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCT---TCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCE-EEECCTTTCTTHHH
T ss_pred             EEEEECCCcccchhHHHHHHHHHHhcCC---CCcEEEEEeeecccccccchHHHHHHhhcccCce-EEEEecCCCcCHHH
Confidence            9999999999999999999998877543   7899999999999875444 45566777777776 999999999 9999


Q ss_pred             HHHHHHHHHh
Q 006490          580 VFSRIIWAAE  589 (643)
Q Consensus       580 l~~~l~~~~~  589 (643)
                      +|+.+++.+.
T Consensus       157 ~f~~l~~~i~  166 (175)
T d2f9la1         157 AFKNILTEIY  166 (175)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988753

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=3.5e-26  Score=210.50  Aligned_cols=160  Identities=17%  Similarity=0.266  Sum_probs=127.6

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (643)
Q Consensus        12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v   89 (643)
                      .+||+++|++|||||||+++|+++.+...+.++.+...  .....+...+.+.+|||+|...+...+..+++.+|++++|
T Consensus         3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   82 (170)
T d1i2ma_           3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIM   82 (170)
T ss_dssp             EEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhhc
Confidence            47999999999999999999999998777555444322  4445566788999999999998888999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHHH
Q 006490           90 YACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY  169 (643)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  169 (643)
                      ||++++.+++.+.. |...+.+.++++|+++|+||+|+......    +....++...+  .++++|||++|.||+++|+
T Consensus        83 ~d~~~~~Sf~~~~~-~~~~~~~~~~~~piilvgnK~Dl~~~~~~----~~~~~~~~~~~--~~~~e~Sak~~~~v~e~f~  155 (170)
T d1i2ma_          83 FDVTSRVTYKNVPN-WHRDLVRVCENIPIVLCGNKVDIKDRKVK----AKSIVFHRKKN--LQYYDISAKSNYNFEKPFL  155 (170)
T ss_dssp             EETTSGGGGTTHHH-HHHHHHHHHCSCCEEEEEECCCCSCSCCT----TTSHHHHSSCS--SEEEEEBTTTTBTTTHHHH
T ss_pred             cccccccccchhHH-HHHHHhhccCCCceeeecchhhhhhhhhh----hHHHHHHHHcC--CEEEEEeCCCCCCHHHHHH
Confidence            99999999999984 88888777779999999999999765432    22234444443  3799999999999999999


Q ss_pred             HHHHHHhCC
Q 006490          170 YAQKAVLHP  178 (643)
Q Consensus       170 ~i~~~~~~~  178 (643)
                      ++++.++..
T Consensus       156 ~l~~~l~~~  164 (170)
T d1i2ma_         156 WLARKLIGD  164 (170)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHccC
Confidence            999988753

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=3.8e-25  Score=205.05  Aligned_cols=159  Identities=21%  Similarity=0.285  Sum_probs=133.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill  503 (643)
                      .||+|+|++|||||||+++|+++.+...+.||..+. ........+....+.+||++|++.+..+  +..+++++|++++
T Consensus         3 ~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~g~~~~~~~--~~~~~~~~~~~il   79 (177)
T d1kmqa_           3 KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIEVDGKQVELALWDTAGLEDYDRL--RPLSYPDTDVILM   79 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEE-EEEEEEETTEEEEEEEEEECCSGGGTTT--GGGGCTTCSEEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeee-ccccccccccceeeeccccCccchhccc--chhhcccchhhhh
Confidence            589999999999999999999999988888887753 3445566667778899999999998887  7889999999999


Q ss_pred             EEeCCChhhHHHHHHHHHH-HHHhcCCCCCCCcEEEEEeCCCCCCcc-------------ccHHHHHHHHHHhCCCCcEE
Q 006490          504 VYDSSDEYSWKRTKELLVE-VARLGEDSGYGVPCLLIASKDDLKPYT-------------MAVQDSARVTQELGIEPPIP  569 (643)
Q Consensus       504 v~D~s~~~s~~~~~~~~~~-i~~~~~~~~~~~pvilv~NK~Dl~~~~-------------~~~~~~~~~~~~~~~~~~~~  569 (643)
                      |||++++.||+....|... +....+    +.|+++|+||+|+...+             ...++...+++.++..++++
T Consensus        80 v~d~~~~~Sf~~~~~~~~~~~~~~~~----~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E  155 (177)
T d1kmqa_          80 CFSIDSPDSLENIPEKWTPEVKHFCP----NVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYME  155 (177)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHST----TSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred             hcccchhHHHHHHHHHHHHHHHHhCC----CCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEE
Confidence            9999999999988775544 444433    79999999999997532             12567888999999777999


Q ss_pred             eeeccC-CHHHHHHHHHHHHh
Q 006490          570 VSMKSK-DLNNVFSRIIWAAE  589 (643)
Q Consensus       570 vSa~~g-~i~~l~~~l~~~~~  589 (643)
                      |||++| |++++|+.+++.+.
T Consensus       156 ~SAkt~~gi~e~F~~i~~~~l  176 (177)
T d1kmqa_         156 CSAKTKDGVREVFEMATRAAL  176 (177)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHH
T ss_pred             ecCCCCcCHHHHHHHHHHHHh
Confidence            999999 99999999998764

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.9e-25  Score=203.93  Aligned_cols=160  Identities=20%  Similarity=0.286  Sum_probs=135.4

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEE
Q 006490          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~il  502 (643)
                      .+||+++|++|||||||+++++++.+...+.||.+..+..... ..|....+.+||++|++.+..   ...+++.||+++
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~~~~-~~~~~~~l~i~D~~g~~~~~~---~~~~~~~~~~~i   77 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQAT-IDDEVVSMEILDTAGQEDTIQ---REGHMRWGEGFV   77 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEE-ETTEEEEEEEEECCCCCCCHH---HHHHHHHCSEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceecccccccc-ccccceEEEEeeccccccccc---chhhhcccccce
Confidence            4899999999999999999999999998888998877665544 455677888999999876643   456889999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-C-HHH
Q 006490          503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-D-LNN  579 (643)
Q Consensus       503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~-i~~  579 (643)
                      +|||++++.||+.+..|...+.......  +.|+++|+||+|+...+.+ .++++++++++++. +++|||++| | |++
T Consensus        78 lv~d~~~~~s~~~~~~~~~~~~~~~~~~--~~piilvgnK~Dl~~~r~V~~~e~~~~a~~~~~~-~~e~Saktg~gnV~e  154 (168)
T d2atva1          78 LVYDITDRGSFEEVLPLKNILDEIKKPK--NVTLILVGNKADLDHSRQVSTEEGEKLATELACA-FYECSACTGEGNITE  154 (168)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTTS--CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSE-EEECCTTTCTTCHHH
T ss_pred             eecccCCccchhhhhhhccccccccccc--CcceeeeccchhhhhhccCcHHHHHHHHHHhCCe-EEEEccccCCcCHHH
Confidence            9999999999999998876665544333  7999999999999876544 77889999999997 999999998 6 999


Q ss_pred             HHHHHHHHHh
Q 006490          580 VFSRIIWAAE  589 (643)
Q Consensus       580 l~~~l~~~~~  589 (643)
                      +|..|++.+.
T Consensus       155 ~F~~l~~~i~  164 (168)
T d2atva1         155 IFYELCREVR  164 (168)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998764

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=4e-25  Score=203.46  Aligned_cols=162  Identities=22%  Similarity=0.295  Sum_probs=142.0

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i  501 (643)
                      ..+||+++|.+|||||||+++|+++++...+.+|.+..+....+...+....+.+||++|++.+..+  +..+++.+|++
T Consensus         5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~--~~~~~~~~~~~   82 (170)
T d1r2qa_           5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSL--APMYYRGAQAA   82 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGG--HHHHHTTCSEE
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhh--HHHHhhCcceE
Confidence            3589999999999999999999999998888888887777777777766778889999999998887  77889999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHH
Q 006490          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNN  579 (643)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~  579 (643)
                      ++|||.+++.+|+....|...+.+....   +.|+++|+||+|+..++.+ .+..+.+++..+++ +++|||++| ||++
T Consensus        83 ilv~d~~~~~s~~~~~~~~~~~~~~~~~---~~~iilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~-~~e~SAk~g~~V~e  158 (170)
T d1r2qa_          83 IVVYDITNEESFARAKNWVKELQRQASP---NIVIALSGNKADLANKRAVDFQEAQSYADDNSLL-FMETSAKTSMNVNE  158 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCT---TCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEECCTTTCTTHHH
T ss_pred             EEEeccchhhHHHHHHHHhhhhhhccCC---CceEEeecccccccccccccHHHHHHHHHhcCCE-EEEeeCCCCCCHHH
Confidence            9999999999999999998888765443   7999999999999776544 67788999999986 999999999 9999


Q ss_pred             HHHHHHHHHh
Q 006490          580 VFSRIIWAAE  589 (643)
Q Consensus       580 l~~~l~~~~~  589 (643)
                      +|+.|++.+.
T Consensus       159 ~f~~l~~~i~  168 (170)
T d1r2qa_         159 IFMAIAKKLP  168 (170)
T ss_dssp             HHHHHHHTSC
T ss_pred             HHHHHHHHHh
Confidence            9999988654

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.7e-25  Score=207.24  Aligned_cols=164  Identities=21%  Similarity=0.339  Sum_probs=136.7

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (643)
                      +..+||+|+|.+|||||||+++|+++++...+.||+.+... ..+...+....+.+||+.|++.+..+  ...+++.+|+
T Consensus         3 p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~~~~-~~~~~~~~~~~~~~~d~~g~~~~~~~--~~~~~~~~~~   79 (183)
T d1mh1a_           3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQEDYDRL--RPLSYPQTDV   79 (183)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEE-EEEEETTEEEEEEEECCCCSGGGTTT--GGGGCTTCSE
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHHhCCCCcccccceeecee-eeeeccCcceEEEeecccccccchhh--hhhcccccce
Confidence            35699999999999999999999999999888888876544 44455657778889999999998887  6788999999


Q ss_pred             EEEEEeCCChhhHHHHHH-HHHHHHHhcCCCCCCCcEEEEEeCCCCCCccc-------------cHHHHHHHHHHhCCCC
Q 006490          501 TIFVYDSSDEYSWKRTKE-LLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-------------AVQDSARVTQELGIEP  566 (643)
Q Consensus       501 illv~D~s~~~s~~~~~~-~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~-------------~~~~~~~~~~~~~~~~  566 (643)
                      +++|||++++.||+.+.. |...+.....    ++|+++|+||+|+..++.             ...+...+++.++..+
T Consensus        80 ~ilv~d~~~~~sf~~i~~~~~~~~~~~~~----~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  155 (183)
T d1mh1a_          80 SLICFSLVSPASFENVRAKWYPEVRHHCP----NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVK  155 (183)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHST----TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSE
T ss_pred             eeeeeccchHHHHHHHHHHHHHHHHHhCC----CCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCce
Confidence            999999999999999876 5555555433    789999999999865322             1456778888888666


Q ss_pred             cEEeeeccC-CHHHHHHHHHHHHhCC
Q 006490          567 PIPVSMKSK-DLNNVFSRIIWAAEHP  591 (643)
Q Consensus       567 ~~~vSa~~g-~i~~l~~~l~~~~~~~  591 (643)
                      +++|||++| |++++|+.|++.+..|
T Consensus       156 ~~E~SAk~~~~V~e~F~~l~~~il~p  181 (183)
T d1mh1a_         156 YLECSALTQRGLKTVFDEAIRAVLCP  181 (183)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHSCC
T ss_pred             EEEcCCCCCcCHHHHHHHHHHHHcCC
Confidence            999999999 9999999999998765

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.2e-25  Score=205.22  Aligned_cols=161  Identities=20%  Similarity=0.251  Sum_probs=133.6

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEE
Q 006490           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (643)
Q Consensus        11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (643)
                      ..+||+++|++|||||||+++|+++.+....+++.+...  .........+.+.+|||+|++.+...++.+++++|++++
T Consensus         5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   84 (170)
T d1r2qa_           5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIV   84 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEE
Confidence            458999999999999999999999998877666555544  233344556889999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHH-HhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHH
Q 006490           89 TYACNQQSTLSRLSSYWLPEL-RRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV  167 (643)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l-~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  167 (643)
                      |||++++.+++.+.. |...+ +...++.|++||+||+|+...+.+ + .+..+.+++.++  .++++|||++|.||+++
T Consensus        85 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v-~-~e~~~~~~~~~~--~~~~e~SAk~g~~V~e~  159 (170)
T d1r2qa_          85 VYDITNEESFARAKN-WVKELQRQASPNIVIALSGNKADLANKRAV-D-FQEAQSYADDNS--LLFMETSAKTSMNVNEI  159 (170)
T ss_dssp             EEETTCHHHHHHHHH-HHHHHHHHSCTTCEEEEEEECGGGGGGCCS-C-HHHHHHHHHHTT--CEEEECCTTTCTTHHHH
T ss_pred             EeccchhhHHHHHHH-HhhhhhhccCCCceEEeecccccccccccc-c-HHHHHHHHHhcC--CEEEEeeCCCCCCHHHH
Confidence            999999999999986 55555 556678999999999999776555 3 455677777765  37999999999999999


Q ss_pred             HHHHHHHHh
Q 006490          168 FYYAQKAVL  176 (643)
Q Consensus       168 ~~~i~~~~~  176 (643)
                      |+.+++.+.
T Consensus       160 f~~l~~~i~  168 (170)
T d1r2qa_         160 FMAIAKKLP  168 (170)
T ss_dssp             HHHHHHTSC
T ss_pred             HHHHHHHHh
Confidence            999988654

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.9e-25  Score=203.57  Aligned_cols=161  Identities=20%  Similarity=0.308  Sum_probs=134.3

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEE
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (643)
                      ++++||+|+|++|||||||+++|+++.+...+.++.+... ......+..+.+.+||++|.+.+....+.+++.++++++
T Consensus         1 m~e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ii   80 (166)
T d1ctqa_           1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   80 (166)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeeccceeeeceeeeeeeeeccCccccccchhhhhhcccccce
Confidence            4679999999999999999999999998777555444333 334445667889999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhH
Q 006490           89 TYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (643)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  166 (643)
                      |||++++.+++.+. +|.+.+.+.  .+++|+++|+||+|+.... .  ..+.++.+++.++  .++++|||++|.||++
T Consensus        81 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~-~--~~~~~~~~~~~~~--~~~~e~Sak~g~gi~e  154 (166)
T d1ctqa_          81 VFAINNTKSFEDIH-QYREQIKRVKDSDDVPMVLVGNKCDLAART-V--ESRQAQDLARSYG--IPYIETSAKTRQGVED  154 (166)
T ss_dssp             EEETTCHHHHHTHH-HHHHHHHHHHTCSSCCEEEEEECTTCSCCC-S--CHHHHHHHHHHHT--CCEEECCTTTCTTHHH
T ss_pred             eecccccccHHHHH-HHHHHHHHhcCCCCCeEEEEeccccccccc-c--cHHHHHHHHHHhC--CeEEEEcCCCCcCHHH
Confidence            99999999999987 599988653  3579999999999986432 2  3455677888876  3699999999999999


Q ss_pred             HHHHHHHHHh
Q 006490          167 VFYYAQKAVL  176 (643)
Q Consensus       167 l~~~i~~~~~  176 (643)
                      +|+.+++.+.
T Consensus       155 ~f~~i~~~i~  164 (166)
T d1ctqa_         155 AFYTLVREIR  164 (166)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998765

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=6.9e-25  Score=201.03  Aligned_cols=161  Identities=26%  Similarity=0.425  Sum_probs=139.8

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEE
Q 006490          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~il  502 (643)
                      .+||+++|.+|||||||+++|+++++...+.||++.++....+..+|....+.+||++|++.+..+  +..+++.+|+++
T Consensus         2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~~~~i   79 (166)
T d1g16a_           2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTI--TTAYYRGAMGII   79 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCC--CHHHHTTEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHH--HHHHHhcCCEEE
Confidence            589999999999999999999999998888899998898889999987888889999999998887  788999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC-CHHHHH
Q 006490          503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNVF  581 (643)
Q Consensus       503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l~  581 (643)
                      +|||.+++.||+.+..|...+......   ..|+++++||.|+.......++.+++++.++++ +++|||++| |++++|
T Consensus        80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~~i~~~~k~d~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~e~f  155 (166)
T d1g16a_          80 LVYDITDERTFTNIKQWFKTVNEHAND---EAQLLLVGNKSDMETRVVTADQGEALAKELGIP-FIESSAKNDDNVNEIF  155 (166)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCT---TCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCC-EEECBTTTTBSHHHHH
T ss_pred             EEEECCCccCHHHHHhhhhhhhccccC---cceeeeecchhhhhhhhhhHHHHHHHHHhcCCe-EEEECCCCCCCHHHHH
Confidence            999999999999999888877766543   688999999999988777788999999999986 999999999 999999


Q ss_pred             HHHHHHHh
Q 006490          582 SRIIWAAE  589 (643)
Q Consensus       582 ~~l~~~~~  589 (643)
                      ++|++.+.
T Consensus       156 ~~l~~~i~  163 (166)
T d1g16a_         156 FTLAKLIQ  163 (166)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998775

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=6.6e-25  Score=203.07  Aligned_cols=165  Identities=18%  Similarity=0.332  Sum_probs=126.4

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCC-cEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGG-NKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~-~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i  501 (643)
                      .+||+++|++|||||||+++|+++++...+.||.+...........+. ...+.+||++|++.+...  +..+++.+|++
T Consensus         2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~--~~~~~~~~~~~   79 (175)
T d1ky3a_           2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSL--GVAFYRGADCC   79 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC------------CCSTTCCEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhH--HHHHhhccceE
Confidence            589999999999999999999999998888887766555555544433 345678999999887776  67789999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCC-CCCCcEEEEEeCCCCCCccc--cHHHHHHHHHHhCCCCcEEeeeccC-CH
Q 006490          502 IFVYDSSDEYSWKRTKELLVEVARLGEDS-GYGVPCLLIASKDDLKPYTM--AVQDSARVTQELGIEPPIPVSMKSK-DL  577 (643)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~-~~~~pvilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~vSa~~g-~i  577 (643)
                      ++|||++++.||+.+..|+.++....... ..++|+++|+||+|+.+.+.  ..+.++++++.++..++++|||++| |+
T Consensus        80 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~gv  159 (175)
T d1ky3a_          80 VLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINV  159 (175)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSH
T ss_pred             EEEeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHHHHcCCCeEEEEeCCCCcCH
Confidence            99999999999999999999887644321 12789999999999986543  2678889999998666999999999 99


Q ss_pred             HHHHHHHHHHHh
Q 006490          578 NNVFSRIIWAAE  589 (643)
Q Consensus       578 ~~l~~~l~~~~~  589 (643)
                      +++|++|++.+.
T Consensus       160 ~e~f~~l~~~~l  171 (175)
T d1ky3a_         160 DTAFEEIARSAL  171 (175)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998764

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.3e-24  Score=200.91  Aligned_cols=166  Identities=16%  Similarity=0.285  Sum_probs=138.4

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i  501 (643)
                      .-+||+|+|++|||||||+++|+++.+...+.+|+........+...+......+||++|.......  ....+..+|++
T Consensus         5 ~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~--~~~~~~~~~~~   82 (174)
T d1wmsa_           5 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSL--RTPFYRGSDCC   82 (174)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHH--HGGGGTTCSEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhh--hhhhhhccceE
Confidence            4579999999999999999999999998888888888777777777766778889999998777666  67888999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCC-CCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC-CHHH
Q 006490          502 IFVYDSSDEYSWKRTKELLVEVARLGEDS-GYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNN  579 (643)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g-~i~~  579 (643)
                      ++++|.+++.||+.+..|+..+.+..... ..+.|+++|+||+|+.+.....+++++++++++..++++|||++| ||++
T Consensus        83 i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~~v~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e  162 (174)
T d1wmsa_          83 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAA  162 (174)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHH
T ss_pred             EEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhhccCcHHHHHHHHHHcCCCeEEEEcCCCCcCHHH
Confidence            99999999999999999998886654221 127899999999999775555778889999887555999999999 9999


Q ss_pred             HHHHHHHHHh
Q 006490          580 VFSRIIWAAE  589 (643)
Q Consensus       580 l~~~l~~~~~  589 (643)
                      +|+.|++.+.
T Consensus       163 ~f~~l~~~il  172 (174)
T d1wmsa_         163 AFEEAVRRVL  172 (174)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999998765

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=5.4e-25  Score=203.41  Aligned_cols=162  Identities=19%  Similarity=0.341  Sum_probs=141.5

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i  501 (643)
                      ..+||+++|.+|||||||+++|+++++...+.+|.........+...+....+.+||++|++.+..+  +..+++.+|++
T Consensus         4 ~~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--~~~~~~~~~~~   81 (174)
T d2bmea1           4 FLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSV--TRSYYRGAAGA   81 (174)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHH--HHTTSTTCSEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhh--HHHHhhhCCEE
Confidence            4589999999999999999999999998888888777776676767766778889999999998887  78889999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHH
Q 006490          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNN  579 (643)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~  579 (643)
                      ++|+|.+++.+|..+..|+..+......   ++|+++|+||+|+...... .+....+++..+++ +++|||++| |+++
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~e~Sak~~~gi~e  157 (174)
T d2bmea1          82 LLVYDITSRETYNALTNWLTDARMLASQ---NIVIILCGNKKDLDADREVTFLEASRFAQENELM-FLETSALTGENVEE  157 (174)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCT---TCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEECCTTTCTTHHH
T ss_pred             EEEEecccchhHHHHhhhhcccccccCC---ceEEEEEEecccccchhchhhhHHHHHHHhCCCE-EEEeeCCCCcCHHH
Confidence            9999999999999999999988776543   7999999999998765444 66778899999987 999999999 9999


Q ss_pred             HHHHHHHHHh
Q 006490          580 VFSRIIWAAE  589 (643)
Q Consensus       580 l~~~l~~~~~  589 (643)
                      +|+++++.+.
T Consensus       158 ~f~~l~~~i~  167 (174)
T d2bmea1         158 AFVQCARKIL  167 (174)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998764

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=3.1e-25  Score=205.35  Aligned_cols=162  Identities=18%  Similarity=0.230  Sum_probs=120.7

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee---eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEE
Q 006490           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR---LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (643)
Q Consensus        12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (643)
                      -+||+|+|++|||||||+++|+++.+...+.++.+...   ...........+.+|||+|.+.+...+..+++.+|++++
T Consensus         2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   81 (175)
T d1ky3a_           2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVL   81 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEEE
Confidence            47999999999999999999999998777554443333   112233345678999999999988888999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHhc-----CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCC
Q 006490           89 TYACNQQSTLSRLSSYWLPELRRL-----EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQ  163 (643)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~~-----~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  163 (643)
                      |||++++.+++.+. .|.+.+...     ..++|+++|+||+|+...+.. ...+..++++++++. .++++|||++|.|
T Consensus        82 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~-v~~~~~~~~~~~~~~-~~~~e~SA~~g~g  158 (175)
T d1ky3a_          82 VYDVTNASSFENIK-SWRDEFLVHANVNSPETFPFVILGNKIDAEESKKI-VSEKSAQELAKSLGD-IPLFLTSAKNAIN  158 (175)
T ss_dssp             EEETTCHHHHHTHH-HHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCC-SCHHHHHHHHHHTTS-CCEEEEBTTTTBS
T ss_pred             Eeecccccccchhh-hcchhhhhhhhhcccccCcEEEEecccchhhhhcc-hhHHHHHHHHHHcCC-CeEEEEeCCCCcC
Confidence            99999999999987 588887542     247899999999999765444 345566788888865 3699999999999


Q ss_pred             hhHHHHHHHHHHh
Q 006490          164 VPDVFYYAQKAVL  176 (643)
Q Consensus       164 i~~l~~~i~~~~~  176 (643)
                      |+++|+++++.++
T Consensus       159 v~e~f~~l~~~~l  171 (175)
T d1ky3a_         159 VDTAFEEIARSAL  171 (175)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988765

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=3.3e-25  Score=204.66  Aligned_cols=159  Identities=20%  Similarity=0.289  Sum_probs=128.2

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEE
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~   90 (643)
                      +||+|+|++|||||||+++++++++...+.+......  .........+.+.+||++|+..+...++.+++.+|++|+||
T Consensus         4 ~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ilv~   83 (173)
T d2a5ja1           4 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   83 (173)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEEEE
Confidence            7999999999999999999999998776443332222  33344455688999999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHHh-cCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHHH
Q 006490           91 ACNQQSTLSRLSSYWLPELRR-LEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY  169 (643)
Q Consensus        91 d~~~~~s~~~~~~~~~~~l~~-~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  169 (643)
                      |++++.+++.+.. |+..+.+ ...++|++||+||+|+...+..  ..+....+++.++  .++++|||++|.||+++|.
T Consensus        84 d~~~~~sf~~~~~-~~~~~~~~~~~~~piilv~nK~D~~~~~~~--~~~~~~~~a~~~~--~~~~e~Sa~tg~~V~e~f~  158 (173)
T d2a5ja1          84 DITRRETFNHLTS-WLEDARQHSSSNMVIMLIGNKSDLESRRDV--KREEGEAFAREHG--LIFMETSAKTACNVEEAFI  158 (173)
T ss_dssp             ETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECTTCGGGCCS--CHHHHHHHHHHHT--CEEEEECTTTCTTHHHHHH
T ss_pred             eecChHHHHhHHH-HHHHHHHhCCCCCeEEEEecCCchhhhhhh--HHHHHHHHHHHcC--CEEEEecCCCCCCHHHHHH
Confidence            9999999999985 6666654 4578999999999998765554  3455677777776  3799999999999999999


Q ss_pred             HHHHHHh
Q 006490          170 YAQKAVL  176 (643)
Q Consensus       170 ~i~~~~~  176 (643)
                      ++++.+.
T Consensus       159 ~i~~~i~  165 (173)
T d2a5ja1         159 NTAKEIY  165 (173)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988764

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1e-24  Score=201.04  Aligned_cols=163  Identities=21%  Similarity=0.342  Sum_probs=131.9

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~-~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i  501 (643)
                      -+||+++|.+|||||||+++|.+..+...+. +|+..+.....+...|....+.+||.++....+... +..+++.+|++
T Consensus         3 ~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~~-~~~~~~~~~~~   81 (172)
T d2g3ya1           3 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWL-HDHCMQVGDAY   81 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHH-HHCCCCCCSEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeecccccccccccc-cccccccccee
Confidence            5899999999999999999999987765544 566666777777777666777788876532222211 45678999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHH
Q 006490          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNN  579 (643)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~  579 (643)
                      |+|||++++.||+.+..|...+.......  ++|+++|+||+|+...+++ .++++.+++.++++ +++|||++| |+++
T Consensus        82 ilvfd~t~~~s~~~~~~~~~~i~~~~~~~--~~piilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~-~~e~Sak~g~~i~~  158 (172)
T d2g3ya1          82 LIVYSITDRASFEKASELRIQLRRARQTE--DIPIILVGNKSDLVRCREVSVSEGRACAVVFDCK-FIETSAAVQHNVKE  158 (172)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHTSGGGT--TSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEECBTTTTBSHHH
T ss_pred             eeeecccccchhhhhhhhhhhhhhccccC--CceEEEEeccccccccccccHHHHHHHHHHcCCe-EEEEeCCCCcCHHH
Confidence            99999999999999999998887654433  7999999999999876544 67788999999996 999999999 9999


Q ss_pred             HHHHHHHHHh
Q 006490          580 VFSRIIWAAE  589 (643)
Q Consensus       580 l~~~l~~~~~  589 (643)
                      +|+.|++.+.
T Consensus       159 ~f~~l~~~i~  168 (172)
T d2g3ya1         159 LFEGIVRQVR  168 (172)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999774

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=9.5e-25  Score=202.32  Aligned_cols=164  Identities=18%  Similarity=0.302  Sum_probs=145.2

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i  501 (643)
                      ..+||+++|.+|||||||+++|.++++...+.++.+.......+...+....+.+||++|++.+..+  +..+++++|++
T Consensus         6 ~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~~~i   83 (177)
T d1x3sa1           6 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTL--TPSYYRGAQGV   83 (177)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCS--HHHHHTTCCEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHH--HHHHHhcCCEE
Confidence            3589999999999999999999999998888887777777777888877778999999999988877  77889999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC-CHHHH
Q 006490          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNV  580 (643)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l  580 (643)
                      ++|||++++.+++.+..|+..+.+.....  ..|+++++||.|........++..++++.+++. +++|||++| |++++
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~~~i~~~~nk~d~~~~~v~~~~~~~~~~~~~~~-~~e~Sa~tg~gv~e~  160 (177)
T d1x3sa1          84 ILVYDVTRRDTFVKLDNWLNELETYCTRN--DIVNMLVGNKIDKENREVDRNEGLKFARKHSML-FIEASAKTCDGVQCA  160 (177)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHTTCCSCS--CCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCE-EEECCTTTCTTHHHH
T ss_pred             EEEEECCCccccccchhhhhhhccccccc--ceeeEEEeeccccccccccHHHHHHHHHHCCCE-EEEEeCCCCCCHHHH
Confidence            99999999999999999999987765544  789999999999877666678888999999987 999999999 99999


Q ss_pred             HHHHHHHHhC
Q 006490          581 FSRIIWAAEH  590 (643)
Q Consensus       581 ~~~l~~~~~~  590 (643)
                      |++|++.+.+
T Consensus       161 f~~l~~~l~~  170 (177)
T d1x3sa1         161 FEELVEKIIQ  170 (177)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHcc
Confidence            9999997763

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=1.3e-24  Score=199.08  Aligned_cols=159  Identities=19%  Similarity=0.322  Sum_probs=136.7

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEE
Q 006490          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~il  502 (643)
                      .+||+++|.+|||||||+++|+++++...+.++.........+...+......+||+.|....... .+..+++++|+++
T Consensus         2 ~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~i   80 (165)
T d1z06a1           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKS-MVQHYYRNVHAVV   80 (165)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTT-THHHHHTTCCEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccc-cceeeecCCCceE
Confidence            589999999999999999999999999888888887777777777767778889999998766543 1566889999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeecc---C-CH
Q 006490          503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKS---K-DL  577 (643)
Q Consensus       503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~---g-~i  577 (643)
                      +|||++++.||+.+..|+.++.+.....  +.|+++|+||+|+...+.+ .++++++++.+++. +++|||++   + ||
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~--~~pi~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~SAkt~~~~~~V  157 (165)
T d1z06a1          81 FVYDMTNMASFHSLPAWIEECKQHLLAN--DIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMP-LFETSAKNPNDNDHV  157 (165)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHCCCS--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCC-EEECCSSSGGGGSCH
T ss_pred             EEEEeehhhhhhhhhhhhHHHHhhccCC--CCeEEEEeccccchhccchhHHHHHHHHHHCCCE-EEEEecccCCcCcCH
Confidence            9999999999999999999988765544  7999999999999876544 67789999999996 99999997   4 79


Q ss_pred             HHHHHHHH
Q 006490          578 NNVFSRII  585 (643)
Q Consensus       578 ~~l~~~l~  585 (643)
                      +++|++|+
T Consensus       158 ~e~F~~lA  165 (165)
T d1z06a1         158 EAIFMTLA  165 (165)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHhC
Confidence            99998873

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=3.3e-25  Score=205.64  Aligned_cols=163  Identities=26%  Similarity=0.381  Sum_probs=135.2

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEE
Q 006490           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (643)
Q Consensus        12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~   90 (643)
                      .+||+|+|++|||||||+++|+.+.|...+.++..... .....+...+.+.+|||+|++.+...++.+++++|++|+||
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~   81 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICF   81 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeecccccccccceEEeeccccccccccccccccchhhhhhhhheee
Confidence            47999999999999999999999998877555443332 44455677889999999999999888999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCC------------CccchhhhhhhHHHHhhcccceEEEeCc
Q 006490           91 ACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD------------HNATSLEEVMGPIMQQFREIETCVECSA  158 (643)
Q Consensus        91 d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  158 (643)
                      |++++.|++.+...|.+.++..+++.|++|||||+|+...            ..+  ..+....++++++. ..|+||||
T Consensus        82 d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V--~~~e~~~~a~~~~~-~~y~E~SA  158 (179)
T d1m7ba_          82 DISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPV--SYDQGANMAKQIGA-ATYIECSA  158 (179)
T ss_dssp             ETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCC--CHHHHHHHHHHHTC-SEEEECBT
T ss_pred             ecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccccccchhhHHHhhhhcCcc--hHHHHHHHHHHhCC-CeEEEEeC
Confidence            9999999999988788888888889999999999998642            112  23445677777764 47999999


Q ss_pred             ccCC-ChhHHHHHHHHHHhC
Q 006490          159 TTMI-QVPDVFYYAQKAVLH  177 (643)
Q Consensus       159 ~~~~-gi~~l~~~i~~~~~~  177 (643)
                      ++|. ||+++|+.+++.++.
T Consensus       159 k~~~n~i~~~F~~~~~~~l~  178 (179)
T d1m7ba_         159 LQSENSVRDIFHVATLACVN  178 (179)
T ss_dssp             TTBHHHHHHHHHHHHHHHHT
T ss_pred             CCCCcCHHHHHHHHHHHHhc
Confidence            9998 599999999988753

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=1.7e-24  Score=203.63  Aligned_cols=162  Identities=23%  Similarity=0.356  Sum_probs=143.1

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i  501 (643)
                      ..+||+|+|.+|||||||+++|+++.+...+.||.+..+....+...|....+.+||++|++.+..+  +..+++.||++
T Consensus         5 ~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~--~~~~~~~a~~~   82 (194)
T d2bcgy1           5 YLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTI--TSSYYRGSHGI   82 (194)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCC--CGGGGTTCSEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHH--HHHHhccCCEE
Confidence            3589999999999999999999999988888888888888788888877888899999999998887  78899999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHH
Q 006490          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNN  579 (643)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~  579 (643)
                      |+|||++++.+|.....|...+.+....   +.|+++|+||+|+.+.... .+....+++..++. ++++||++| |+++
T Consensus        83 i~v~d~t~~~s~~~~~~~~~~~~~~~~~---~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~e~SAk~g~gi~e  158 (194)
T d2bcgy1          83 IIVYDVTDQESFNGVKMWLQEIDRYATS---TVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMP-FLETSALDSTNVED  158 (194)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCT---TCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCC-EEECCTTTCTTHHH
T ss_pred             EEEEeCcchhhhhhHhhhhhhhhhcccC---CceEEEEEeccccccccchhHHHHhhhhhccCcc-eEEEecCcCccHHH
Confidence            9999999999999999988888765433   7899999999999875544 66778888888887 999999999 9999


Q ss_pred             HHHHHHHHHh
Q 006490          580 VFSRIIWAAE  589 (643)
Q Consensus       580 l~~~l~~~~~  589 (643)
                      +|+.|++.+.
T Consensus       159 ~f~~l~~~i~  168 (194)
T d2bcgy1         159 AFLTMARQIK  168 (194)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998764

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=9.9e-25  Score=200.83  Aligned_cols=160  Identities=21%  Similarity=0.299  Sum_probs=140.6

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEE
Q 006490          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~il  502 (643)
                      .+||+++|++|||||||+++|+++++...+.||.+.++....+...+....+.+||++|++.+..+  +..+++.+|+++
T Consensus         3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~--~~~~~~~~~~~i   80 (170)
T d1ek0a_           3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASL--APMYYRNAQAAL   80 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGG--HHHHHTTCSEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHH--HHHHHhccceEE
Confidence            589999999999999999999999999988899888888888888877778899999999988877  778999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCc---cc-cHHHHHHHHHHhCCCCcEEeeeccC-CH
Q 006490          503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPY---TM-AVQDSARVTQELGIEPPIPVSMKSK-DL  577 (643)
Q Consensus       503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~---~~-~~~~~~~~~~~~~~~~~~~vSa~~g-~i  577 (643)
                      +|||.+++.||+.+..|+..+......   ..|+++|+||+|+.+.   +. ..+++.++++..+++ +++|||++| |+
T Consensus        81 lv~d~~~~~s~~~~~~~~~~~~~~~~~---~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~~-~~e~Sak~g~gV  156 (170)
T d1ek0a_          81 VVYDVTKPQSFIKARHWVKELHEQASK---DIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLL-FFETSAKTGENV  156 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCT---TCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCE-EEECCTTTCTTH
T ss_pred             EEEeCCcccchhhhhhhhhhhcccccc---ccceeeeecccccccccchhhhhHHHHHHHHHHcCCE-EEEecCCCCcCH
Confidence            999999999999999998877665443   6899999999998653   22 267888999999996 999999999 99


Q ss_pred             HHHHHHHHHHH
Q 006490          578 NNVFSRIIWAA  588 (643)
Q Consensus       578 ~~l~~~l~~~~  588 (643)
                      +++|..|++.+
T Consensus       157 ~e~F~~i~~~i  167 (170)
T d1ek0a_         157 NDVFLGIGEKI  167 (170)
T ss_dssp             HHHHHHHHTTS
T ss_pred             HHHHHHHHHHh
Confidence            99999998754

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=1e-24  Score=205.17  Aligned_cols=161  Identities=17%  Similarity=0.268  Sum_probs=132.8

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (643)
Q Consensus        12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v   89 (643)
                      .+||+|+|++|||||||+++|+++.+...+.++.+...  ....+....+.+.+|||||++++..++..+++.+|++|+|
T Consensus         6 ~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~i~v   85 (194)
T d2bcgy1           6 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIV   85 (194)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence            48999999999999999999999998877655555443  3445566788999999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHH-HhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHH
Q 006490           90 YACNQQSTLSRLSSYWLPEL-RRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (643)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l-~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  168 (643)
                      ||++++.++..+.. |...+ +....+.|+++|+||+|+......  ..+....+....+  ..+++|||++|.||+++|
T Consensus        86 ~d~t~~~s~~~~~~-~~~~~~~~~~~~~~iilv~nK~D~~~~~~~--~~~~~~~~~~~~~--~~~~e~SAk~g~gi~e~f  160 (194)
T d2bcgy1          86 YDVTDQESFNGVKM-WLQEIDRYATSTVLKLLVGNKCDLKDKRVV--EYDVAKEFADANK--MPFLETSALDSTNVEDAF  160 (194)
T ss_dssp             EETTCHHHHHHHHH-HHHHHHHHSCTTCEEEEEEECTTCTTTCCS--CHHHHHHHHHHTT--CCEEECCTTTCTTHHHHH
T ss_pred             EeCcchhhhhhHhh-hhhhhhhcccCCceEEEEEeccccccccch--hHHHHhhhhhccC--cceEEEecCcCccHHHHH
Confidence            99999999999986 55555 445678999999999999876555  3344455555554  369999999999999999


Q ss_pred             HHHHHHHhC
Q 006490          169 YYAQKAVLH  177 (643)
Q Consensus       169 ~~i~~~~~~  177 (643)
                      +.+++.+..
T Consensus       161 ~~l~~~i~~  169 (194)
T d2bcgy1         161 LTMARQIKE  169 (194)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999987753

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=8.1e-25  Score=200.92  Aligned_cols=159  Identities=21%  Similarity=0.316  Sum_probs=128.4

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe-eeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEE
Q 006490           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (643)
Q Consensus        12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~   90 (643)
                      ++||+|+|++|||||||+++|+++.|...+.++.+.. ......++..+.+.+|||+|...+. ....+++.+|++++||
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv~   80 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLVY   80 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeccccccccccccceEEEEeecccccccc-cchhhhcccccceeec
Confidence            6899999999999999999999999888866554432 3444455667889999999998764 5667899999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHH--hcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCC-ChhHH
Q 006490           91 ACNQQSTLSRLSSYWLPELR--RLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMI-QVPDV  167 (643)
Q Consensus        91 d~~~~~s~~~~~~~~~~~l~--~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-gi~~l  167 (643)
                      |++++.+++.+.. |...+.  ....+.|+++|+||+|+...+.+  ..+..+.++++++  .+|++|||++|. ||+++
T Consensus        81 d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V--~~~e~~~~a~~~~--~~~~e~Saktg~gnV~e~  155 (168)
T d2atva1          81 DITDRGSFEEVLP-LKNILDEIKKPKNVTLILVGNKADLDHSRQV--STEEGEKLATELA--CAFYECSACTGEGNITEI  155 (168)
T ss_dssp             ETTCHHHHHTHHH-HHHHHHHHHTTSCCCEEEEEECGGGGGGCCS--CHHHHHHHHHHHT--SEEEECCTTTCTTCHHHH
T ss_pred             ccCCccchhhhhh-hcccccccccccCcceeeeccchhhhhhccC--cHHHHHHHHHHhC--CeEEEEccccCCcCHHHH
Confidence            9999999999985 555443  33468999999999999766554  3445677888886  379999999998 59999


Q ss_pred             HHHHHHHHh
Q 006490          168 FYYAQKAVL  176 (643)
Q Consensus       168 ~~~i~~~~~  176 (643)
                      |..+++.+.
T Consensus       156 F~~l~~~i~  164 (168)
T d2atva1         156 FYELCREVR  164 (168)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988754

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.7e-24  Score=203.10  Aligned_cols=163  Identities=22%  Similarity=0.364  Sum_probs=135.5

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEE
Q 006490          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~il  502 (643)
                      .+||+++|++|||||||+++|+++.+...+.||+.... .......|....+.+||++|++.+..+  +..+++++|+++
T Consensus         3 ~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~g~~~~~~~--~~~~~~~~~~~i   79 (191)
T d2ngra_           3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRL--RPLSYPQTDVFL   79 (191)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEETTEEEEEEEEEECCSGGGTTT--GGGGCTTCSEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeec-ceeEeeCCceeeeeccccccchhhhhh--hhhcccccceee
Confidence            58999999999999999999999999888888887644 444555656778889999999998887  788899999999


Q ss_pred             EEEeCCChhhHHHHHHHHHH-HHHhcCCCCCCCcEEEEEeCCCCCCcc-------------ccHHHHHHHHHHhCCCCcE
Q 006490          503 FVYDSSDEYSWKRTKELLVE-VARLGEDSGYGVPCLLIASKDDLKPYT-------------MAVQDSARVTQELGIEPPI  568 (643)
Q Consensus       503 lv~D~s~~~s~~~~~~~~~~-i~~~~~~~~~~~pvilv~NK~Dl~~~~-------------~~~~~~~~~~~~~~~~~~~  568 (643)
                      +|||+++++||+.+..|+.. +.....    +.|+++|+||+|+.+..             ...++++.+++.++..+++
T Consensus        80 lv~d~~~~~Sf~~~~~~~~~~~~~~~~----~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  155 (191)
T d2ngra_          80 VCFSVVSPSSFENVKEKWVPEITHHCP----KTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYV  155 (191)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCT----TCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEE
T ss_pred             cccccchHHHHHHHHHHHHHHHhhcCC----CCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCeEE
Confidence            99999999999999875544 444333    79999999999986532             2267788899998765699


Q ss_pred             EeeeccC-CHHHHHHHHHHHHhCCC
Q 006490          569 PVSMKSK-DLNNVFSRIIWAAEHPH  592 (643)
Q Consensus       569 ~vSa~~g-~i~~l~~~l~~~~~~~~  592 (643)
                      +|||++| |++++|+.+++.+..+.
T Consensus       156 e~SAk~~~~V~e~f~~l~~~~~~~~  180 (191)
T d2ngra_         156 ECSALTQKGLKNVFDEAILAALEPP  180 (191)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHTSCC
T ss_pred             EEeCCCCcCHHHHHHHHHHHHhcCc
Confidence            9999999 99999999999876543

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.2e-24  Score=200.22  Aligned_cols=161  Identities=17%  Similarity=0.213  Sum_probs=124.0

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEE
Q 006490           12 GVRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (643)
Q Consensus        12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (643)
                      .+||+|+|++|||||||+++|+++.+... .+++.+...  ......+..+.+.+|||||++.+...+..+++.+|++++
T Consensus         6 ~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~i~   85 (170)
T d2g6ba1           6 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLL   85 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCceeEE
Confidence            47999999999999999999999987655 344333333  233445556789999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHH
Q 006490           89 TYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (643)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  168 (643)
                      |||++++.++..+...|....+......|+++|+||+|......+ . .+.+..+++.++  .++++|||++|.||+++|
T Consensus        86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~~~~v-~-~~~~~~~~~~~~--~~~~e~Sak~g~gi~e~f  161 (170)
T d2g6ba1          86 LYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVV-K-REDGEKLAKEYG--LPFMETSAKTGLNVDLAF  161 (170)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCS-C-HHHHHHHHHHHT--CCEEECCTTTCTTHHHHH
T ss_pred             EecCCcccchhhhhhhhhhhhhccCCCceEEEEEeeechhhcccc-c-HHHHHHHHHHcC--CEEEEEeCCCCcCHHHHH
Confidence            999999999999987555555555668999999999999876655 3 345667777776  379999999999999999


Q ss_pred             HHHHHHHh
Q 006490          169 YYAQKAVL  176 (643)
Q Consensus       169 ~~i~~~~~  176 (643)
                      +++++.+.
T Consensus       162 ~~l~~~i~  169 (170)
T d2g6ba1         162 TAIAKELK  169 (170)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHcC
Confidence            99998764

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=5.3e-25  Score=203.47  Aligned_cols=160  Identities=22%  Similarity=0.255  Sum_probs=130.4

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (643)
Q Consensus        12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v   89 (643)
                      .+||+|+|++|||||||+++|+++.+...+.++.+...  .....+.....+.+|||||++++...++.+++.+|++++|
T Consensus         5 ~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (174)
T d2bmea1           5 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLV   84 (174)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEEEEE
Confidence            37999999999999999999999998777665444443  2233445677899999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHH-hcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHH
Q 006490           90 YACNQQSTLSRLSSYWLPELR-RLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (643)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~-~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  168 (643)
                      ||.+++.++..+.. |...+. ....++|+++|+||+|+......  ..+....+++..+  .++++|||++|.||+++|
T Consensus        85 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~piivv~nK~D~~~~~~~--~~~~~~~~~~~~~--~~~~e~Sak~~~gi~e~f  159 (174)
T d2bmea1          85 YDITSRETYNALTN-WLTDARMLASQNIVIILCGNKKDLDADREV--TFLEASRFAQENE--LMFLETSALTGENVEEAF  159 (174)
T ss_dssp             EETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECGGGGGGCCS--CHHHHHHHHHHTT--CEEEECCTTTCTTHHHHH
T ss_pred             EecccchhHHHHhh-hhcccccccCCceEEEEEEecccccchhch--hhhHHHHHHHhCC--CEEEEeeCCCCcCHHHHH
Confidence            99999999999885 555554 44568999999999998765444  3344566666665  379999999999999999


Q ss_pred             HHHHHHHh
Q 006490          169 YYAQKAVL  176 (643)
Q Consensus       169 ~~i~~~~~  176 (643)
                      +++.+.+.
T Consensus       160 ~~l~~~i~  167 (174)
T d2bmea1         160 VQCARKIL  167 (174)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988765

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=8.4e-25  Score=202.26  Aligned_cols=160  Identities=20%  Similarity=0.256  Sum_probs=127.4

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (643)
Q Consensus        12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v   89 (643)
                      -+||+|+|++|||||||+++|+++.+.....+..+...  ....++...+.+.+|||+|.+.+...+..+++.+|++|+|
T Consensus         4 ~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i~v   83 (175)
T d2f9la1           4 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLV   83 (175)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEEEE
Confidence            47999999999999999999999998777554444433  3334555678899999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHH
Q 006490           90 YACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (643)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  168 (643)
                      ||.+++.++..+.. |+..+.+. .+++|++||+||+|+.+....  ..+....+....+  .++++|||++|.||+++|
T Consensus        84 ~d~~~~~S~~~~~~-~~~~i~~~~~~~~piilvgnK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~e~Sa~~g~~i~e~f  158 (175)
T d2f9la1          84 YDIAKHLTYENVER-WLKELRDHADSNIVIMLVGNKSDLRHLRAV--PTDEARAFAEKNN--LSFIETSALDSTNVEEAF  158 (175)
T ss_dssp             EETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECTTCGGGCCS--CHHHHHHHHHHTT--CEEEECCTTTCTTHHHHH
T ss_pred             EECCCcccchhHHH-HHHHHHHhcCCCCcEEEEEeeecccccccc--hHHHHHHhhcccC--ceEEEEecCCCcCHHHHH
Confidence            99999999999985 77777654 467899999999999765443  2333344555544  379999999999999999


Q ss_pred             HHHHHHHh
Q 006490          169 YYAQKAVL  176 (643)
Q Consensus       169 ~~i~~~~~  176 (643)
                      +++++.+.
T Consensus       159 ~~l~~~i~  166 (175)
T d2f9la1         159 KNILTEIY  166 (175)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99888753

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.7e-24  Score=197.80  Aligned_cols=162  Identities=20%  Similarity=0.349  Sum_probs=132.8

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~-~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (643)
                      ..+||+|+|++|||||||+++++++++...+. ++++.++....+...|....+.+|||+|++.+..+  +..+++++|+
T Consensus         5 ~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~--~~~~~~~~d~   82 (170)
T d2g6ba1           5 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSV--THAYYRDAHA   82 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC----------CCGGGCSE
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHH--HHHhhcCCce
Confidence            45899999999999999999999998765554 45666677777777766778889999999998887  7778999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHH
Q 006490          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLN  578 (643)
Q Consensus       501 illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~  578 (643)
                      +++|||.+++.+++.+..|...+......   ..|+++|+||+|+...... .+++..+++.++++ +++|||++| |++
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~iilv~~k~d~~~~~~v~~~~~~~~~~~~~~~-~~e~Sak~g~gi~  158 (170)
T d2g6ba1          83 LLLLYDVTNKASFDNIQAWLTEIHEYAQH---DVALMLLGNKVDSAHERVVKREDGEKLAKEYGLP-FMETSAKTGLNVD  158 (170)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCT---TCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCC-EEECCTTTCTTHH
T ss_pred             eEEEecCCcccchhhhhhhhhhhhhccCC---CceEEEEEeeechhhcccccHHHHHHHHHHcCCE-EEEEeCCCCcCHH
Confidence            99999999999999999988877665543   6899999999999876544 67888999999986 999999999 999


Q ss_pred             HHHHHHHHHHh
Q 006490          579 NVFSRIIWAAE  589 (643)
Q Consensus       579 ~l~~~l~~~~~  589 (643)
                      ++|++|++.+.
T Consensus       159 e~f~~l~~~i~  169 (170)
T d2g6ba1         159 LAFTAIAKELK  169 (170)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHcC
Confidence            99999998764

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.92  E-value=2.8e-24  Score=200.48  Aligned_cols=164  Identities=18%  Similarity=0.277  Sum_probs=140.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill  503 (643)
                      +||+|+|.+|||||||+++|+++++...+.||.+.+.........+......+||++|.......  +...+..||++++
T Consensus         3 ~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~--~~~~~~~~~~~i~   80 (184)
T d1vg8a_           3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSL--GVAFYRGADCCVL   80 (184)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCS--CCGGGTTCSEEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCccccccc--ccccccCccEEEE
Confidence            79999999999999999999999999888888888888888888877888889999998887776  6788899999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhcCCC-CCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC-CHHHHH
Q 006490          504 VYDSSDEYSWKRTKELLVEVARLGEDS-GYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNVF  581 (643)
Q Consensus       504 v~D~s~~~s~~~~~~~~~~i~~~~~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l~  581 (643)
                      |+|.+++.+++.+..|+..+....... ..++|+++|+||+|+.+.....+....++...+..++++|||++| |++++|
T Consensus        81 ~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~f  160 (184)
T d1vg8a_          81 VFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF  160 (184)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHH
T ss_pred             eecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccccchhHHHHHHHHHHhcCCeEEEEcCCCCcCHHHHH
Confidence            999999999999999998887654321 126899999999999876666777777877665555999999999 999999


Q ss_pred             HHHHHHHh
Q 006490          582 SRIIWAAE  589 (643)
Q Consensus       582 ~~l~~~~~  589 (643)
                      ++|++.+.
T Consensus       161 ~~l~~~i~  168 (184)
T d1vg8a_         161 QTIARNAL  168 (184)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988764

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=7.2e-25  Score=204.93  Aligned_cols=163  Identities=12%  Similarity=0.209  Sum_probs=136.0

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCC----------CcEEEEEEecCCchhhhhhhcc
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPG----------GNKKTLILQEIPEEGVKKILSN  491 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g----------~~~~~~i~d~~g~~~~~~~~~~  491 (643)
                      .-+||+|+|.+|||||||+++|+++++...+.+|...++....+..++          ....+.+||++|++.+..+  +
T Consensus         4 ~~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~--~   81 (186)
T d2f7sa1           4 YLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSL--T   81 (186)
T ss_dssp             EEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHH--H
T ss_pred             EEEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHH--H
Confidence            358999999999999999999999998877767666655554443321          2245678999999999888  7


Q ss_pred             HHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEe
Q 006490          492 KEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPV  570 (643)
Q Consensus       492 ~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~v  570 (643)
                      ..++++||++++|||++++.+|+.+..|+..+.......  ..|+++|+||+|+...+.+ .+++.+++++++++ +++|
T Consensus        82 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~~iilv~nK~Dl~~~~~v~~~e~~~~~~~~~~~-~~e~  158 (186)
T d2f7sa1          82 TAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCE--NPDIVLIGNKADLPDQREVNERQARELADKYGIP-YFET  158 (186)
T ss_dssp             HHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTT--CCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCC-EEEE
T ss_pred             HHHHhcCCEEEEEEeccccccceeeeeccchhhhhccCC--CceEEEEeeeccchhhhcchHHHHHHHHHHcCCE-EEEE
Confidence            788999999999999999999999999988776554333  7899999999999876544 66788999999986 9999


Q ss_pred             eeccC-CHHHHHHHHHHHHh
Q 006490          571 SMKSK-DLNNVFSRIIWAAE  589 (643)
Q Consensus       571 Sa~~g-~i~~l~~~l~~~~~  589 (643)
                      ||++| |++++|++|++.+.
T Consensus       159 Sak~~~~i~e~f~~l~~~i~  178 (186)
T d2f7sa1         159 SAATGQNVEKAVETLLDLIM  178 (186)
T ss_dssp             BTTTTBTHHHHHHHHHHHHH
T ss_pred             eCCCCCCHHHHHHHHHHHHH
Confidence            99999 99999999999774

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=5.1e-25  Score=203.36  Aligned_cols=162  Identities=19%  Similarity=0.358  Sum_probs=114.2

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i  501 (643)
                      ..+||+|+|.+|||||||+++|+++.+...+.+|.+.++....+..+|....+.+||++|++.+..+  +..+++++|++
T Consensus         5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~--~~~~~~~~~~~   82 (173)
T d2fu5c1           5 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI--TTAYYRGAMGI   82 (173)
T ss_dssp             EEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC-----------CCTTTTTCSEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHH--HHHhccCCCEE
Confidence            4589999999999999999999999887777778887788888888877788889999999998887  77889999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHH
Q 006490          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNN  579 (643)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~  579 (643)
                      |+|||++++.||+.+..|...+......   +.|+++|+||+|+...+.. .+++..++...++. +++|||++| |+++
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~iilv~~k~D~~~~~~~~~~~~~~~~~~~~~~-~~e~Sa~~g~gv~e  158 (173)
T d2fu5c1          83 MLVYDITNEKSFDNIRNWIRNIEEHASA---DVEKMILGNKCDVNDKRQVSKERGEKLALDYGIK-FMETSAKANINVEN  158 (173)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCT---TCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCE-EEECCC---CCHHH
T ss_pred             EEEEECCChhhHHHHHHHHHHhhhhccC---CceEEEEEecccchhhcccHHHHHHHHHHhcCCE-EEEEeCCCCCCHHH
Confidence            9999999999999999998888655443   7999999999999875444 56678889999987 999999999 9999


Q ss_pred             HHHHHHHHHh
Q 006490          580 VFSRIIWAAE  589 (643)
Q Consensus       580 l~~~l~~~~~  589 (643)
                      +|++|++.+.
T Consensus       159 ~f~~l~~~i~  168 (173)
T d2fu5c1         159 AFFTLARDIK  168 (173)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998764

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=2.6e-24  Score=198.02  Aligned_cols=161  Identities=19%  Similarity=0.255  Sum_probs=131.8

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (643)
Q Consensus        12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v   89 (643)
                      .+||+|+|++|||||||+++|+++.|...++++.+...  .........+.+.+|||+|.+.+...++.++..+|++++|
T Consensus         3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv   82 (170)
T d1ek0a_           3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVV   82 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEEE
Confidence            58999999999999999999999998888766555432  3445566778999999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHH-HhcCCCCcEEEEEecccCCCCC--ccchhhhhhhHHHHhhcccceEEEeCcccCCChhH
Q 006490           90 YACNQQSTLSRLSSYWLPEL-RRLEIKVPIIVAGCKLDLRGDH--NATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (643)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l-~~~~~~~pvilv~NK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  166 (643)
                      ||++++.+++.+.. |...+ .......|+++|+||+|+....  .. ...+....+++..+  .+|++|||++|.||++
T Consensus        83 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~v~nk~d~~~~~~~~~-v~~~~~~~~~~~~~--~~~~e~Sak~g~gV~e  158 (170)
T d1ek0a_          83 YDVTKPQSFIKARH-WVKELHEQASKDIIIALVGNKIDMLQEGGERK-VAREEGEKLAEEKG--LLFFETSAKTGENVND  158 (170)
T ss_dssp             EETTCHHHHHHHHH-HHHHHHHHSCTTCEEEEEEECGGGGGSSCCCC-SCHHHHHHHHHHHT--CEEEECCTTTCTTHHH
T ss_pred             EeCCcccchhhhhh-hhhhhccccccccceeeeecccccccccchhh-hhHHHHHHHHHHcC--CEEEEecCCCCcCHHH
Confidence            99999999999985 55544 4456689999999999986542  12 23445677778776  3799999999999999


Q ss_pred             HHHHHHHHHh
Q 006490          167 VFYYAQKAVL  176 (643)
Q Consensus       167 l~~~i~~~~~  176 (643)
                      +|..+.+.+.
T Consensus       159 ~F~~i~~~i~  168 (170)
T d1ek0a_         159 VFLGIGEKIP  168 (170)
T ss_dssp             HHHHHHTTSC
T ss_pred             HHHHHHHHhc
Confidence            9999887643

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=5.3e-24  Score=196.29  Aligned_cols=161  Identities=19%  Similarity=0.167  Sum_probs=125.5

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEE
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (643)
                      ..+.+||+++|++|||||||+++++++.+....++..........+++..+.+.+|||+|+..+     .+++.+|++|+
T Consensus         2 ~~p~~ki~vlG~~~vGKTsLi~~~~~~~f~~~~~t~~~~~~~~i~v~~~~~~l~i~Dt~g~~~~-----~~~~~ad~~il   76 (175)
T d2bmja1           2 SIPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPDA-----KFSGWADAVIF   76 (175)
T ss_dssp             CCCEEEEEEECCTTTTHHHHHHHHHHSCCCCCCCSSCEEEEEEEEETTEEEEEEEEECSSCCCH-----HHHHHCSEEEE
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHhCCCCCcCCccceeEEEEeecCceEEEEEEeeccccccc-----ccccccceeEE
Confidence            3568999999999999999999999999866555443333344556677788999999997653     57899999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHhc----CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCCh
Q 006490           89 TYACNQQSTLSRLSSYWLPELRRL----EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQV  164 (643)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~~----~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  164 (643)
                      |||++++.|++.+. .|.+++...    ..+.|+++|+||.|+..........+..+.++.+... .+|++|||++|.||
T Consensus        77 Vfd~~~~~Sf~~~~-~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~~~~-~~~~e~SAk~~~~v  154 (175)
T d2bmja1          77 VFSLEDENSFQAVS-RLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCADMKR-CSYYETCATYGLNV  154 (175)
T ss_dssp             EEETTCHHHHHHHH-HHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHHTSTT-EEEEEEBTTTTBTH
T ss_pred             EeecccchhhhhhH-HHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHHHHhCC-CeEEEeCCCCCcCH
Confidence            99999999999988 488887543    2467999999999876543221234445666655543 37999999999999


Q ss_pred             hHHHHHHHHHHh
Q 006490          165 PDVFYYAQKAVL  176 (643)
Q Consensus       165 ~~l~~~i~~~~~  176 (643)
                      +++|..+++.+.
T Consensus       155 ~~~F~~l~~~i~  166 (175)
T d2bmja1         155 DRVFQEVAQKVV  166 (175)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988765

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=5.2e-24  Score=196.69  Aligned_cols=163  Identities=21%  Similarity=0.266  Sum_probs=129.5

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEE
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il   87 (643)
                      .+-+||+|+|++|||||||+++|+++.+...++++.+...  .........+.+.+||++|..+.......++..+|+++
T Consensus         4 ~~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   83 (174)
T d1wmsa_           4 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCL   83 (174)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceEE
Confidence            3458999999999999999999999998877666554443  33334455688899999999888888889999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHhc-----CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCC
Q 006490           88 LTYACNQQSTLSRLSSYWLPELRRL-----EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMI  162 (643)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~l~~~-----~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  162 (643)
                      +|||.+++.+++.+. .|.+.+.+.     ..+.|++||+||+|+.+ +.+  ..+..+.++++.+.+ ++++|||++|.
T Consensus        84 ~~~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~-~~v--~~~~~~~~~~~~~~~-~~~e~Sak~~~  158 (174)
T d1wmsa_          84 LTFSVDDSQSFQNLS-NWKKEFIYYADVKEPESFPFVILGNKIDISE-RQV--STEEAQAWCRDNGDY-PYFETSAKDAT  158 (174)
T ss_dssp             EEEETTCHHHHHTHH-HHHHHHHHHHTCSCTTTSCEEEEEECTTCSS-CSS--CHHHHHHHHHHTTCC-CEEECCTTTCT
T ss_pred             EEEeeecccccchhh-hHHHHHHHHhccccCCCceEEEeccccchhh-ccC--cHHHHHHHHHHcCCC-eEEEEcCCCCc
Confidence            999999999999988 488877543     24689999999999864 333  334556777776543 69999999999


Q ss_pred             ChhHHHHHHHHHHhC
Q 006490          163 QVPDVFYYAQKAVLH  177 (643)
Q Consensus       163 gi~~l~~~i~~~~~~  177 (643)
                      ||+++|+++++.++.
T Consensus       159 gI~e~f~~l~~~il~  173 (174)
T d1wmsa_         159 NVAAAFEEAVRRVLA  173 (174)
T ss_dssp             THHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHhc
Confidence            999999999988753

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=9.1e-25  Score=201.62  Aligned_cols=160  Identities=15%  Similarity=0.277  Sum_probs=101.2

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (643)
Q Consensus        12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v   89 (643)
                      -+||+|+|++|||||||+++|+++.+....+++.+...  ....++...+.+.+|||||++.+...++.+++++|++|+|
T Consensus         6 ~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i~v   85 (173)
T d2fu5c1           6 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLV   85 (173)
T ss_dssp             EEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEEEEE
Confidence            48999999999999999999999887666444333222  3344455678899999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHH-hcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHH
Q 006490           90 YACNQQSTLSRLSSYWLPELR-RLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (643)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~-~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  168 (643)
                      ||++++.+++.+.. |...+. ....+.|+++|+||+|+......  ..+....++...+  .++++|||++|.||+++|
T Consensus        86 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~iilv~~k~D~~~~~~~--~~~~~~~~~~~~~--~~~~e~Sa~~g~gv~e~f  160 (173)
T d2fu5c1          86 YDITNEKSFDNIRN-WIRNIEEHASADVEKMILGNKCDVNDKRQV--SKERGEKLALDYG--IKFMETSAKANINVENAF  160 (173)
T ss_dssp             EETTCHHHHHHHHH-HHHHHHHHSCTTCEEEEEEEC--CCSCCCS--CHHHHHHHHHHHT--CEEEECCC---CCHHHHH
T ss_pred             EECCChhhHHHHHH-HHHHhhhhccCCceEEEEEecccchhhccc--HHHHHHHHHHhcC--CEEEEEeCCCCCCHHHHH
Confidence            99999999999985 666665 44568999999999998876554  2334455666665  379999999999999999


Q ss_pred             HHHHHHHh
Q 006490          169 YYAQKAVL  176 (643)
Q Consensus       169 ~~i~~~~~  176 (643)
                      +++++.+.
T Consensus       161 ~~l~~~i~  168 (173)
T d2fu5c1         161 FTLARDIK  168 (173)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988763

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=1.4e-23  Score=194.45  Aligned_cols=159  Identities=18%  Similarity=0.289  Sum_probs=133.3

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill  503 (643)
                      +||+++|.+|||||||+++++.+.+...+.||..... ...+...+....+.+||++|++.+..+  +...++++|++++
T Consensus         3 ~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~--~~~~~~~~~~~il   79 (179)
T d1m7ba_           3 CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNV--RPLSYPDSDAVLI   79 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTT--GGGGCTTCSEEEE
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeecc-cccccccceEEeecccccccccccccc--ccchhhhhhhhhe
Confidence            6999999999999999999999999888888876543 445566767788889999999988777  6778999999999


Q ss_pred             EEeCCChhhHHHHHHHHHH-HHHhcCCCCCCCcEEEEEeCCCCCCcc-------------ccHHHHHHHHHHhCCCCcEE
Q 006490          504 VYDSSDEYSWKRTKELLVE-VARLGEDSGYGVPCLLIASKDDLKPYT-------------MAVQDSARVTQELGIEPPIP  569 (643)
Q Consensus       504 v~D~s~~~s~~~~~~~~~~-i~~~~~~~~~~~pvilv~NK~Dl~~~~-------------~~~~~~~~~~~~~~~~~~~~  569 (643)
                      |||++++.||+.+..|+.. +.....    +.|+++|+||+|+....             ...++...++++++..++++
T Consensus        80 v~d~~~~~Sf~~~~~~~~~~~~~~~~----~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~y~E  155 (179)
T d1m7ba_          80 CFDISRPETLDSVLKKWKGEIQEFCP----NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIE  155 (179)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCT----TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred             eeecccCCCHHHHHHHHHHHHhccCC----cceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhCCCeEEE
Confidence            9999999999998876544 444433    79999999999986421             22667888999998777999


Q ss_pred             eeeccC-C-HHHHHHHHHHHHh
Q 006490          570 VSMKSK-D-LNNVFSRIIWAAE  589 (643)
Q Consensus       570 vSa~~g-~-i~~l~~~l~~~~~  589 (643)
                      |||++| | ++++|+.+++.+.
T Consensus       156 ~SAk~~~n~i~~~F~~~~~~~l  177 (179)
T d1m7ba_         156 CSALQSENSVRDIFHVATLACV  177 (179)
T ss_dssp             CBTTTBHHHHHHHHHHHHHHHH
T ss_pred             EeCCCCCcCHHHHHHHHHHHHh
Confidence            999999 6 9999999998775

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=9.3e-24  Score=195.53  Aligned_cols=163  Identities=18%  Similarity=0.253  Sum_probs=134.1

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEE
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il   87 (643)
                      .+.+||+++|++|||||||+++|+++.+....+++.+...  ....+....+.+.+|||||++++..+++.+++.+|+++
T Consensus         5 ~~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii   84 (177)
T d1x3sa1           5 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI   84 (177)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred             cceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence            3568999999999999999999999998777665444433  33455566788999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHhcC--CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChh
Q 006490           88 LTYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP  165 (643)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  165 (643)
                      +|||++++.+++.+. .|+..+.+.+  ...|+++++||.|.... .+  ..+....++++++  .++++|||++|.||+
T Consensus        85 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~i~~~~nk~d~~~~-~v--~~~~~~~~~~~~~--~~~~e~Sa~tg~gv~  158 (177)
T d1x3sa1          85 LVYDVTRRDTFVKLD-NWLNELETYCTRNDIVNMLVGNKIDKENR-EV--DRNEGLKFARKHS--MLFIEASAKTCDGVQ  158 (177)
T ss_dssp             EEEETTCHHHHHTHH-HHHHHHTTCCSCSCCEEEEEEECTTSSSC-CS--CHHHHHHHHHHTT--CEEEECCTTTCTTHH
T ss_pred             EEEECCCccccccch-hhhhhhcccccccceeeEEEeeccccccc-cc--cHHHHHHHHHHCC--CEEEEEeCCCCCCHH
Confidence            999999999999988 4888886643  46899999999997543 22  3344567777776  379999999999999


Q ss_pred             HHHHHHHHHHhCC
Q 006490          166 DVFYYAQKAVLHP  178 (643)
Q Consensus       166 ~l~~~i~~~~~~~  178 (643)
                      ++|+++++.+...
T Consensus       159 e~f~~l~~~l~~~  171 (177)
T d1x3sa1         159 CAFEELVEKIIQT  171 (177)
T ss_dssp             HHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHccC
Confidence            9999999988755

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=9.9e-24  Score=193.22  Aligned_cols=160  Identities=16%  Similarity=0.239  Sum_probs=126.7

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (643)
Q Consensus        12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v   89 (643)
                      -+||+++|++|||||||+++|+++.+...+.++.+...  ....+.+..+.+.+|||||++.+...+..+++++|++++|
T Consensus         2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T d1g16a_           2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            47999999999999999999999998777544444333  4445566778899999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHHH
Q 006490           90 YACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY  169 (643)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  169 (643)
                      ||.+++.+++.+...+...........|+++++||.|+.....   ..+..+.+++.++  .++++|||++|.||+++|+
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~~~~~---~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~e~f~  156 (166)
T d1g16a_          82 YDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVV---TADQGEALAKELG--IPFIESSAKNDDNVNEIFF  156 (166)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCS---CHHHHHHHHHHHT--CCEEECBTTTTBSHHHHHH
T ss_pred             EECCCccCHHHHHhhhhhhhccccCcceeeeecchhhhhhhhh---hHHHHHHHHHhcC--CeEEEECCCCCCCHHHHHH
Confidence            9999999999988634444444556789999999999865433   3455677777776  3799999999999999999


Q ss_pred             HHHHHHh
Q 006490          170 YAQKAVL  176 (643)
Q Consensus       170 ~i~~~~~  176 (643)
                      ++++.+.
T Consensus       157 ~l~~~i~  163 (166)
T d1g16a_         157 TLAKLIQ  163 (166)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988764

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=1.5e-23  Score=195.55  Aligned_cols=159  Identities=21%  Similarity=0.253  Sum_probs=128.0

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEE
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~   90 (643)
                      +||+|+|++|||||||+++|+++.+...+.++.+...  .........+.+.+|||+|...+...+..++..+|++++||
T Consensus         3 ~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~   82 (184)
T d1vg8a_           3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVF   82 (184)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEee
Confidence            7999999999999999999999998877666554443  34445566788999999999988888889999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHHhc-----CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChh
Q 006490           91 ACNQQSTLSRLSSYWLPELRRL-----EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP  165 (643)
Q Consensus        91 d~~~~~s~~~~~~~~~~~l~~~-----~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  165 (643)
                      |.+++.+++.+. .|.+.+...     ..++|+++|+||+|+.+...  .. +....+...... .++++|||++|.||+
T Consensus        83 d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~~~--~~-~~~~~~~~~~~~-~~~~e~Sak~~~gI~  157 (184)
T d1vg8a_          83 DVTAPNTFKTLD-SWRDEFLIQASPRDPENFPFVVLGNKIDLENRQV--AT-KRAQAWCYSKNN-IPYFETSAKEAINVE  157 (184)
T ss_dssp             ETTCHHHHHTHH-HHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCS--CH-HHHHHHHHHTTS-CCEEECBTTTTBSHH
T ss_pred             cccchhhhhcch-hhHHHHHHHhccccccCCCEEEEEEeecccccch--hH-HHHHHHHHHhcC-CeEEEEcCCCCcCHH
Confidence            999999999987 588877553     23689999999999865432  23 333445444433 479999999999999


Q ss_pred             HHHHHHHHHHh
Q 006490          166 DVFYYAQKAVL  176 (643)
Q Consensus       166 ~l~~~i~~~~~  176 (643)
                      ++|+++++.+.
T Consensus       158 e~f~~l~~~i~  168 (184)
T d1vg8a_         158 QAFQTIARNAL  168 (184)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988765

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.90  E-value=1.5e-23  Score=191.79  Aligned_cols=160  Identities=13%  Similarity=0.141  Sum_probs=121.9

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEE
Q 006490           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (643)
Q Consensus        11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~   90 (643)
                      +.+||+|+|++|||||||+++|.+..+....|+ .+...  ..+..+++.+.+|||||++.+...+..+++.+|++++||
T Consensus         1 k~~ki~ivG~~~~GKTsLi~~l~~~~~~~~~~t-~~~~~--~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   77 (165)
T d1ksha_           1 RELRLLMLGLDNAGKTTILKKFNGEDVDTISPT-LGFNI--KTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV   77 (165)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCC-SSEEE--EEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEE
T ss_pred             CcEEEEEECCCCCCHHHHHHHHcCCCCCcccce-Eeeee--eeccccccceeeeecCcchhhhhHHHhhhhhhhcceeee
Confidence            468999999999999999999998876443333 33222  234567899999999999888888899999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCCCCCccchhhhhhhHHH-Hhhcc-cceEEEeCcccCCChhHH
Q 006490           91 ACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIM-QQFRE-IETCVECSATTMIQVPDV  167 (643)
Q Consensus        91 d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~Sa~~~~gi~~l  167 (643)
                      |+++..++......|...+... ..++|+++|+||+|+......   .+....+. ..+.. -.++++|||++|+||.++
T Consensus        78 d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~  154 (165)
T d1ksha_          78 DSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSC---NAIQEALELDSIRSHHWRIQGCSAVTGEDLLPG  154 (165)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH---HHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred             ecccchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccccCH---HHHHHHHHhhhhhcCCCEEEEEECCCCCCHHHH
Confidence            9999999999887666666432 358999999999999764433   12111111 11111 125899999999999999


Q ss_pred             HHHHHHHHh
Q 006490          168 FYYAQKAVL  176 (643)
Q Consensus       168 ~~~i~~~~~  176 (643)
                      |+++.+.+.
T Consensus       155 ~~~l~~~i~  163 (165)
T d1ksha_         155 IDWLLDDIS  163 (165)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988764

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.90  E-value=9.2e-24  Score=195.43  Aligned_cols=162  Identities=16%  Similarity=0.217  Sum_probs=120.2

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEE
Q 006490            8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (643)
Q Consensus         8 ~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il   87 (643)
                      ...+++||+++|++|||||||+|+|.++.+....++ .+.+.  ..+...++.+.+||++|.+.+...+..+++.+|++|
T Consensus        12 ~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~~~-~~~~~--~~i~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii   88 (176)
T d1fzqa_          12 APDQEVRILLLGLDNAGKTTLLKQLASEDISHITPT-QGFNI--KSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILI   88 (176)
T ss_dssp             CCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEE-TTEEE--EEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred             CCCCEEEEEEECCCCCCHHHHHHHHhcCCCCcceee-eeeeE--EEeccCCeeEeEeeccccccchhHHHHHhhccceeE
Confidence            345679999999999999999999999887544332 12222  234456789999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCCCCCccchhhhhhh-HHHHhhcccceEEEeCcccCCChh
Q 006490           88 LTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMG-PIMQQFREIETCVECSATTMIQVP  165 (643)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~D~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~  165 (643)
                      +|||++++.++..+...|....... ..++|+++|+||+|+..........+... .....  ....+++|||++|+||+
T Consensus        89 ~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~SA~tg~gv~  166 (176)
T d1fzqa_          89 YVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRD--RVWQIQSCSALTGEGVQ  166 (176)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCS--SCEEEEECCTTTCTTHH
T ss_pred             EeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEeccccccccHHHHHHHHHHHHHHh--cCCEEEEEeCCCCCCHH
Confidence            9999999999999886444444332 24789999999999976543211111111 01111  12368999999999999


Q ss_pred             HHHHHHHHH
Q 006490          166 DVFYYAQKA  174 (643)
Q Consensus       166 ~l~~~i~~~  174 (643)
                      ++|+++.+.
T Consensus       167 e~~~~l~~~  175 (176)
T d1fzqa_         167 DGMNWVCKN  175 (176)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHhc
Confidence            999998864

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.7e-24  Score=200.98  Aligned_cols=160  Identities=16%  Similarity=0.206  Sum_probs=127.3

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCccc----------CCceeEEEEeCCCCCcchhhhHHh
Q 006490           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFY----------PDRVPVTIIDTSSSLENKGKLNEE   79 (643)
Q Consensus        12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~----------~~~~~~~i~Dt~G~~~~~~~~~~~   79 (643)
                      .+||+|+|++|||||||+++|+++.+...+.++.+...  ....++          ...+.+.+|||+|++++..++..+
T Consensus         5 ~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~~~~   84 (186)
T d2f7sa1           5 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAF   84 (186)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHHHHH
Confidence            47999999999999999999999988666443222211  111111          224679999999999999999999


Q ss_pred             hccCCEEEEEEECCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeC
Q 006490           80 LKRADAVVLTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECS  157 (643)
Q Consensus        80 ~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  157 (643)
                      ++++|++|+|||++++.+++.+. .|...+...  ..+.|++||+||+|+...+.+  ..+.+..++++++  .++++||
T Consensus        85 ~~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v--~~~e~~~~~~~~~--~~~~e~S  159 (186)
T d2f7sa1          85 FRDAMGFLLMFDLTSQQSFLNVR-NWMSQLQANAYCENPDIVLIGNKADLPDQREV--NERQARELADKYG--IPYFETS  159 (186)
T ss_dssp             HTTCCEEEEEEETTCHHHHHHHH-HHHHTCCCCCTTTCCEEEEEEECTTCGGGCCS--CHHHHHHHHHHTT--CCEEEEB
T ss_pred             HhcCCEEEEEEeccccccceeee-eccchhhhhccCCCceEEEEeeeccchhhhcc--hHHHHHHHHHHcC--CEEEEEe
Confidence            99999999999999999999988 487766543  357899999999999776555  3345577888876  3799999


Q ss_pred             cccCCChhHHHHHHHHHHh
Q 006490          158 ATTMIQVPDVFYYAQKAVL  176 (643)
Q Consensus       158 a~~~~gi~~l~~~i~~~~~  176 (643)
                      |++|.||+++|+++.+.+.
T Consensus       160 ak~~~~i~e~f~~l~~~i~  178 (186)
T d2f7sa1         160 AATGQNVEKAVETLLDLIM  178 (186)
T ss_dssp             TTTTBTHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHH
Confidence            9999999999999998764

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3.2e-23  Score=190.81  Aligned_cols=161  Identities=22%  Similarity=0.241  Sum_probs=122.6

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCCCCCe-eeCCcccCCceeEEEEeCCCCCcc-hhhhHHhhccCCEE
Q 006490           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEK--VPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLEN-KGKLNEELKRADAV   86 (643)
Q Consensus        11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~-~~~~~~~~~~ad~i   86 (643)
                      ..+||+|+|++|||||||+++|++..+...  .+++.... .....+++..+.+.+||+++.... ......+++.+|++
T Consensus         2 ~~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~~~~~~~~~~~~~   81 (172)
T d2g3ya1           2 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAY   81 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEE
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeecccccccccccccccccccccee
Confidence            358999999999999999999998775432  33322222 244456667788899998764321 12456788999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCCh
Q 006490           87 VLTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQV  164 (643)
Q Consensus        87 l~v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  164 (643)
                      |+|||++++.+++.+.. |...+...  .+++|+++|+||+|+...+.+ ..+ ..+.+++.++  .++++|||++|.||
T Consensus        82 ilvfd~t~~~s~~~~~~-~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v-~~~-~~~~~a~~~~--~~~~e~Sak~g~~i  156 (172)
T d2g3ya1          82 LIVYSITDRASFEKASE-LRIQLRRARQTEDIPIILVGNKSDLVRCREV-SVS-EGRACAVVFD--CKFIETSAAVQHNV  156 (172)
T ss_dssp             EEEEETTCHHHHHHHHH-HHHHHHTSGGGTTSCEEEEEECTTCGGGCCS-CHH-HHHHHHHHHT--CEEEECBTTTTBSH
T ss_pred             eeeecccccchhhhhhh-hhhhhhhccccCCceEEEEeccccccccccc-cHH-HHHHHHHHcC--CeEEEEeCCCCcCH
Confidence            99999999999999984 87777643  358999999999999876655 433 3567777776  37999999999999


Q ss_pred             hHHHHHHHHHHh
Q 006490          165 PDVFYYAQKAVL  176 (643)
Q Consensus       165 ~~l~~~i~~~~~  176 (643)
                      +++|+.+++.+.
T Consensus       157 ~~~f~~l~~~i~  168 (172)
T d2g3ya1         157 KELFEGIVRQVR  168 (172)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998764

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=2.2e-23  Score=190.65  Aligned_cols=155  Identities=19%  Similarity=0.310  Sum_probs=125.3

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchh-hhHHhhccCCEEEE
Q 006490           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKG-KLNEELKRADAVVL   88 (643)
Q Consensus        12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~ad~il~   88 (643)
                      .+||+++|++|||||||+++|+++.+....+++.+...  ....+......+.+||++|...... .++.+++++|++|+
T Consensus         2 ~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~il   81 (165)
T d1z06a1           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (165)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceEE
Confidence            48999999999999999999999998777655544433  3444556678899999999876544 46688999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCccc---CCC
Q 006490           89 TYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATT---MIQ  163 (643)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~g  163 (643)
                      |||++++.+++.+. .|...+.+.  ..++|++|||||+|+.....+  ..+..+.++++++.  ++++|||++   +.|
T Consensus        82 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v--~~~~~~~~~~~~~~--~~~e~SAkt~~~~~~  156 (165)
T d1z06a1          82 VYDMTNMASFHSLP-AWIEECKQHLLANDIPRILVGNKCDLRSAIQV--PTDLAQKFADTHSM--PLFETSAKNPNDNDH  156 (165)
T ss_dssp             EEETTCHHHHHTHH-HHHHHHHHHCCCSCCCEEEEEECTTCGGGCCS--CHHHHHHHHHHTTC--CEEECCSSSGGGGSC
T ss_pred             EEEeehhhhhhhhh-hhhHHHHhhccCCCCeEEEEeccccchhccch--hHHHHHHHHHHCCC--EEEEEecccCCcCcC
Confidence            99999999999987 488777553  358999999999999876655  34456788888873  799999986   569


Q ss_pred             hhHHHHHH
Q 006490          164 VPDVFYYA  171 (643)
Q Consensus       164 i~~l~~~i  171 (643)
                      |+++|+++
T Consensus       157 V~e~F~~l  164 (165)
T d1z06a1         157 VEAIFMTL  164 (165)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99999876

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.2e-22  Score=187.09  Aligned_cols=158  Identities=19%  Similarity=0.269  Sum_probs=125.7

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEE
Q 006490          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~il  502 (643)
                      .+||+++|.+|||||||+++++++++.. +.+|+...+ ...+.++|....+.+||++|+..+       .+++.||++|
T Consensus         5 ~~ki~vlG~~~vGKTsLi~~~~~~~f~~-~~~t~~~~~-~~~i~v~~~~~~l~i~Dt~g~~~~-------~~~~~ad~~i   75 (175)
T d2bmja1           5 ELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPDA-------KFSGWADAVI   75 (175)
T ss_dssp             EEEEEEECCTTTTHHHHHHHHHHSCCCC-CCCSSCEEE-EEEEEETTEEEEEEEEECSSCCCH-------HHHHHCSEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCC-cCCccceeE-EEEeecCceEEEEEEeeccccccc-------ccccccceeE
Confidence            5899999999999999999999998854 335555544 455667777778889999997643       4678999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccc--c-HHHHHHHHHHhCCCCcEEeeeccC-CHH
Q 006490          503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM--A-VQDSARVTQELGIEPPIPVSMKSK-DLN  578 (643)
Q Consensus       503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~--~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~  578 (643)
                      +|||++++.||+.+..|+..+.........+.|+++|+||.|+.....  + .++++.++......++++|||++| |++
T Consensus        76 lVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~  155 (175)
T d2bmja1          76 FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCADMKRCSYYETCATYGLNVD  155 (175)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHHTSTTEEEEEEBTTTTBTHH
T ss_pred             EEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHHHHhCCCeEEEeCCCCCcCHH
Confidence            999999999999999999988766543333789999999999865322  2 556777866654335999999999 999


Q ss_pred             HHHHHHHHHHh
Q 006490          579 NVFSRIIWAAE  589 (643)
Q Consensus       579 ~l~~~l~~~~~  589 (643)
                      ++|..+++.+.
T Consensus       156 ~~F~~l~~~i~  166 (175)
T d2bmja1         156 RVFQEVAQKVV  166 (175)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998775

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.89  E-value=3.8e-23  Score=188.84  Aligned_cols=158  Identities=15%  Similarity=0.184  Sum_probs=121.1

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEE
Q 006490           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA   91 (643)
Q Consensus        12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d   91 (643)
                      ++||+|+|++|||||||+++|.++.+...+.++.+....  .+..+++.+.+||+||++.+...+..++..+|++++|||
T Consensus         2 e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~--~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   79 (164)
T d1zd9a1           2 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVD   79 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeee--eeeeeeEEEEEeeccccccccccccccccccchhhcccc
Confidence            689999999999999999999999887765554443332  345567899999999999888899999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhh--cccceEEEeCcccCCChhHHH
Q 006490           92 CNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF--REIETCVECSATTMIQVPDVF  168 (643)
Q Consensus        92 ~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~gi~~l~  168 (643)
                      ++++.+++.....|...++.. .+++|++||+||+|+......   .+..+.+....  ....+++++||++|.||+++|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~~---~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~~  156 (164)
T d1zd9a1          80 AADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDE---KELIEKMNLSAIQDREICCYSISCKEKDNIDITL  156 (164)
T ss_dssp             TTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCH---HHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHH
T ss_pred             cccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhhhH---HHHHHHHHHHHHHhCCCEEEEEeCcCCcCHHHHH
Confidence            999999999886444444432 368999999999998754322   11112211111  011268999999999999999


Q ss_pred             HHHHHH
Q 006490          169 YYAQKA  174 (643)
Q Consensus       169 ~~i~~~  174 (643)
                      +++++.
T Consensus       157 ~~l~~~  162 (164)
T d1zd9a1         157 QWLIQH  162 (164)
T ss_dssp             HHHHHT
T ss_pred             HHHHHc
Confidence            998874

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.89  E-value=1.6e-22  Score=184.58  Aligned_cols=157  Identities=18%  Similarity=0.262  Sum_probs=123.1

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEE
Q 006490          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~il  502 (643)
                      .+||+++|++|||||||+++|.++++...+.||.+..+  ..++.  +...+.+||++|++.+...  +..++..+|+++
T Consensus         2 e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~--~~~~~--~~~~~~i~D~~G~~~~~~~--~~~~~~~~~~~i   75 (164)
T d1zd9a1           2 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNM--RKITK--GNVTIKLWDIGGQPRFRSM--WERYCRGVSAIV   75 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEE--EEEEE--TTEEEEEEEECCSHHHHTT--HHHHHTTCSEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeee--eeeee--eeEEEEEeecccccccccc--ccccccccchhh
Confidence            58999999999999999999999998877777766433  33333  4578889999999888876  778899999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHH----HHhCCCCcEEeeeccC-CH
Q 006490          503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVT----QELGIEPPIPVSMKSK-DL  577 (643)
Q Consensus       503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~vSa~~g-~i  577 (643)
                      +|||+++..+|.....|+..+.+.....  ++|+++|+||+|+.......+..+.+.    +..++ ++++|||++| |+
T Consensus        76 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~--~~pi~lv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~-~~~e~Sa~~g~gv  152 (164)
T d1zd9a1          76 YMVDAADQEKIEASKNELHNLLDKPQLQ--GIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREI-CCYSISCKEKDNI  152 (164)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGT--TCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCE-EEEECCTTTCTTH
T ss_pred             cccccccccccchhhhhhhhhhhhhccc--CCcEEEEEeccccchhhhHHHHHHHHHHHHHHhCCC-EEEEEeCcCCcCH
Confidence            9999999999999998888776654433  899999999999875332222222221    11222 4799999999 99


Q ss_pred             HHHHHHHHHHH
Q 006490          578 NNVFSRIIWAA  588 (643)
Q Consensus       578 ~~l~~~l~~~~  588 (643)
                      +++|++|++.+
T Consensus       153 ~e~~~~l~~~~  163 (164)
T d1zd9a1         153 DITLQWLIQHS  163 (164)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHHcc
Confidence            99999998743

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.89  E-value=2.8e-23  Score=191.55  Aligned_cols=160  Identities=11%  Similarity=0.108  Sum_probs=119.8

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v   89 (643)
                      .+.+||+++|++|||||||+++|+++.+....++. +  ..........+.+.+||+||...+...+..+++.+|++++|
T Consensus        10 ~k~~kIvlvG~~~vGKTSli~rl~~~~~~~~~~t~-~--~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~v   86 (173)
T d1e0sa_          10 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTV-G--FNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV   86 (173)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHTTCCCCEEEEEET-T--EEEEEEEETTEEEEEEEESCCGGGHHHHGGGTTTCCEEEEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCCcccee-e--eeEEEeeccceeeEEecCCCcchhhhHHHhhhcccceEEEE
Confidence            55799999999999999999999988764433321 1  12223445678999999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCCCCCccchhhhhhhHHHH-hhc-ccceEEEeCcccCCChhH
Q 006490           90 YACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQ-QFR-EIETCVECSATTMIQVPD  166 (643)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~Sa~~~~gi~~  166 (643)
                      ||+++..++..+...|...++.. ..+.|+++|+||+|+......   .+....+.. .+. ....+++|||++|+||++
T Consensus        87 ~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~~---~~i~~~~~~~~~~~~~~~~~e~SA~tg~gv~e  163 (173)
T d1e0sa_          87 VDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP---HEIQEKLGLTRIRDRNWYVQPSCATSGDGLYE  163 (173)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCH---HHHHHHTTGGGCCSSCEEEEECBTTTTBTHHH
T ss_pred             EecccchhHHHHHHHHHHHhhhcccccceeeeeeecccccccccH---HHHHHHHHHHHHHhCCCEEEEeeCCCCcCHHH
Confidence            99999999999986555555432 358999999999999754322   111111111 111 112589999999999999


Q ss_pred             HHHHHHHHH
Q 006490          167 VFYYAQKAV  175 (643)
Q Consensus       167 l~~~i~~~~  175 (643)
                      +|++|.+.+
T Consensus       164 ~~~~l~~~~  172 (173)
T d1e0sa_         164 GLTWLTSNY  172 (173)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHhc
Confidence            999998753

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.88  E-value=9.2e-23  Score=188.60  Aligned_cols=159  Identities=21%  Similarity=0.256  Sum_probs=120.9

Q ss_pred             ccCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccC
Q 006490          419 TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASC  498 (643)
Q Consensus       419 ~~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~a  498 (643)
                      .....+||+++|++|||||||+|+|.++++...+ ++.  .+....+...  ...+.+||++|++.+...  +..+++.+
T Consensus        12 ~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~-~~~--~~~~~~i~~~--~~~~~i~d~~g~~~~~~~--~~~~~~~~   84 (176)
T d1fzqa_          12 APDQEVRILLLGLDNAGKTTLLKQLASEDISHIT-PTQ--GFNIKSVQSQ--GFKLNVWDIGGQRKIRPY--WRSYFENT   84 (176)
T ss_dssp             CCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEE-EET--TEEEEEEEET--TEEEEEEECSSCGGGHHH--HHHHHTTC
T ss_pred             CCCCEEEEEEECCCCCCHHHHHHHHhcCCCCcce-eee--eeeEEEeccC--CeeEeEeeccccccchhH--HHHHhhcc
Confidence            3445689999999999999999999999876444 222  2334445443  467788999999988777  78899999


Q ss_pred             CEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHH----HHhCCCCcEEeeecc
Q 006490          499 DVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVT----QELGIEPPIPVSMKS  574 (643)
Q Consensus       499 d~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~vSa~~  574 (643)
                      |++++|||++++.++.....++..+.......  ++|+++|+||+|+..........+.+.    +..++ ++++|||++
T Consensus        85 ~~ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~--~~pillv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~SA~t  161 (176)
T d1fzqa_          85 DILIYVIDSADRKRFEETGQELTELLEEEKLS--CVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVW-QIQSCSALT  161 (176)
T ss_dssp             SEEEEEEETTCGGGHHHHHHHHHHHTTCGGGT--TCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCE-EEEECCTTT
T ss_pred             ceeEEeeccccccchhhhhhhhhhhhhhhccC--CCeEEEEEEeccccccccHHHHHHHHHHHHHHhcCC-EEEEEeCCC
Confidence            99999999999999999988887776554443  799999999999986433222222211    11122 488999999


Q ss_pred             C-CHHHHHHHHHHH
Q 006490          575 K-DLNNVFSRIIWA  587 (643)
Q Consensus       575 g-~i~~l~~~l~~~  587 (643)
                      | |++++|++|++.
T Consensus       162 g~gv~e~~~~l~~~  175 (176)
T d1fzqa_         162 GEGVQDGMNWVCKN  175 (176)
T ss_dssp             CTTHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHhc
Confidence            9 999999999874

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.88  E-value=4.7e-23  Score=191.73  Aligned_cols=163  Identities=15%  Similarity=0.129  Sum_probs=117.0

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEE
Q 006490            8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (643)
Q Consensus         8 ~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il   87 (643)
                      ...+.+||+++|++|||||||+++|.+..+....|+ .+...  ......++.+.+|||+|.+.+...+..+++.+|+++
T Consensus        13 ~~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~~~t-~~~~~--~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii   89 (182)
T d1moza_          13 GSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPT-IGFNV--ETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVI   89 (182)
T ss_dssp             TCSSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSS-TTCCE--EEEEETTEEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHhcCCCCccccc-cceEE--EEEeeCCEEEEEEecccccccchhHHhhhccceeEE
Confidence            456789999999999999999999988776443333 22211  233456789999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhh-c-ccceEEEeCcccCCCh
Q 006490           88 LTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF-R-EIETCVECSATTMIQV  164 (643)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~Sa~~~~gi  164 (643)
                      +|||++++.++......|...++.. ..+.|+++|+||+|+.+....   .+..+.+.... . ...++++|||++|+||
T Consensus        90 ~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~~---~~i~~~~~~~~~~~~~~~~~e~SA~~g~gv  166 (182)
T d1moza_          90 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSA---SEVSKELNLVELKDRSWSIVASSAIKGEGI  166 (182)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCH---HHHHHHTTTTTCCSSCEEEEEEBGGGTBTH
T ss_pred             EEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeeccccccCH---HHHHHHHHHHHHhhCCCEEEEEECCCCCCH
Confidence            9999999999998875444444433 247999999999999754221   11111111111 1 1126899999999999


Q ss_pred             hHHHHHHHHHHh
Q 006490          165 PDVFYYAQKAVL  176 (643)
Q Consensus       165 ~~l~~~i~~~~~  176 (643)
                      +++|+++.+.+.
T Consensus       167 ~e~~~~l~~~i~  178 (182)
T d1moza_         167 TEGLDWLIDVIK  178 (182)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988753

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.88  E-value=6.5e-22  Score=180.75  Aligned_cols=158  Identities=20%  Similarity=0.225  Sum_probs=118.9

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEE
Q 006490          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~il  502 (643)
                      .+||+|+|++|||||||+++|.+..+. ...||.+  .....+..  ....+.+||++|++.+...  +..+++.+|+++
T Consensus         2 ~~ki~ivG~~~~GKTsLi~~l~~~~~~-~~~~t~~--~~~~~~~~--~~~~~~~~D~~G~~~~~~~--~~~~~~~~~~~i   74 (165)
T d1ksha_           2 ELRLLMLGLDNAGKTTILKKFNGEDVD-TISPTLG--FNIKTLEH--RGFKLNIWDVGGQKSLRSY--WRNYFESTDGLI   74 (165)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTTCCCS-SCCCCSS--EEEEEEEE--TTEEEEEEEECCSHHHHTT--GGGGCTTCSEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHcCCCCC-cccceEe--eeeeeccc--cccceeeeecCcchhhhhH--HHhhhhhhhcce
Confidence            479999999999999999999988754 3335554  33334443  4577889999999888776  678899999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHH-HHhCCC--CcEEeeeccC-CHH
Q 006490          503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVT-QELGIE--PPIPVSMKSK-DLN  578 (643)
Q Consensus       503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~-~~~~~~--~~~~vSa~~g-~i~  578 (643)
                      +|+|+++..++.....++..........  +.|+++|+||+|+.+.....+....+. ......  ++++|||++| |++
T Consensus        75 ~v~d~~d~~~~~~~~~~~~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~  152 (165)
T d1ksha_          75 WVVDSADRQRMQDCQRELQSLLVEERLA--GATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLL  152 (165)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGT--TCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             eeeecccchhHHHHHHhhhhhhhhcccC--CCceEEEEeccccccccCHHHHHHHHHhhhhhcCCCEEEEEECCCCCCHH
Confidence            9999999999988888776665443333  799999999999976443333222221 111111  3799999999 999


Q ss_pred             HHHHHHHHHHh
Q 006490          579 NVFSRIIWAAE  589 (643)
Q Consensus       579 ~l~~~l~~~~~  589 (643)
                      ++|++|.+.+.
T Consensus       153 e~~~~l~~~i~  163 (165)
T d1ksha_         153 PGIDWLLDDIS  163 (165)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998775

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.87  E-value=2.9e-22  Score=186.26  Aligned_cols=156  Identities=20%  Similarity=0.201  Sum_probs=115.9

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (643)
                      +..+||+++|.+|||||||+++|.+..+.... ||.+...  ..++.  ....+.+||++|++.+..+  +..++..+|+
T Consensus        15 ~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~~-~t~~~~~--~~~~~--~~~~~~i~D~~g~~~~~~~--~~~~~~~~~~   87 (182)
T d1moza_          15 NKELRILILGLDGAGKTTILYRLQIGEVVTTK-PTIGFNV--ETLSY--KNLKLNVWDLGGQTSIRPY--WRCYYADTAA   87 (182)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEEEEEC-SSTTCCE--EEEEE--TTEEEEEEEEC----CCTT--GGGTTTTEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccc-cccceEE--EEEee--CCEEEEEEecccccccchh--HHhhhcccee
Confidence            45799999999999999999999988765433 4544332  33333  4567889999999888777  7788899999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCC-------CcEEeeec
Q 006490          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE-------PPIPVSMK  573 (643)
Q Consensus       501 illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-------~~~~vSa~  573 (643)
                      +++|+|++++.++.....|+..+.......  +.|+++|+||+|+......    +++.+.++..       ++++|||+
T Consensus        88 ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~--~~piliv~NK~Dl~~~~~~----~~i~~~~~~~~~~~~~~~~~e~SA~  161 (182)
T d1moza_          88 VIFVVDSTDKDRMSTASKELHLMLQEEELQ--DAALLVFANKQDQPGALSA----SEVSKELNLVELKDRSWSIVASSAI  161 (182)
T ss_dssp             EEEEEETTCTTTHHHHHHHHHHHTTSSTTS--SCEEEEEEECTTSTTCCCH----HHHHHHTTTTTCCSSCEEEEEEBGG
T ss_pred             EEEEeeecccccchhHHHHHHHHHHhhccC--CcceEEEEEeeccccccCH----HHHHHHHHHHHHhhCCCEEEEEECC
Confidence            999999999999999888887765544333  7999999999999753222    2233332211       37999999


Q ss_pred             cC-CHHHHHHHHHHHHh
Q 006490          574 SK-DLNNVFSRIIWAAE  589 (643)
Q Consensus       574 ~g-~i~~l~~~l~~~~~  589 (643)
                      +| |++++|++|.+.+.
T Consensus       162 ~g~gv~e~~~~l~~~i~  178 (182)
T d1moza_         162 KGEGITEGLDWLIDVIK  178 (182)
T ss_dssp             GTBTHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHH
Confidence            99 99999999998875

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.86  E-value=1.9e-21  Score=176.29  Aligned_cols=157  Identities=11%  Similarity=0.119  Sum_probs=118.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEEC
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYAC   92 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~   92 (643)
                      +||+|+|++|||||||+|+|+++.+....+.....   ........+.+.+||++|...+......++..++++++++|+
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d~   77 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN---VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS   77 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCC---EEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEET
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccceeeE---EEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEEEe
Confidence            58999999999999999999998876554443222   224456778999999999998888888999999999999999


Q ss_pred             CCcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCCCCCccch-hhhhhhHHHHhhcccceEEEeCcccCCChhHHHHH
Q 006490           93 NQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATS-LEEVMGPIMQQFREIETCVECSATTMIQVPDVFYY  170 (643)
Q Consensus        93 ~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  170 (643)
                      +++.++..+...+.+.+... ....|+++++||+|+........ ..+.....++..+  .++++|||++|+||+++|++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~~~i~~~~~~~~~~~~~--~~~~~~SAktg~gi~e~~~~  155 (160)
T d1r8sa_          78 NDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRN--WYIQATCATSGDGLYEGLDW  155 (160)
T ss_dssp             TCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCC--EEEEECBTTTTBTHHHHHHH
T ss_pred             cChHHHHHHHHHHHHHHHhhcccCceEEEEeecccccccccHHHHHHHHHHHHHhhCC--CEEEEeECCCCCCHHHHHHH
Confidence            99999999886444444332 34789999999999876432200 1111111222222  36899999999999999999


Q ss_pred             HHHH
Q 006490          171 AQKA  174 (643)
Q Consensus       171 i~~~  174 (643)
                      +.++
T Consensus       156 l~~~  159 (160)
T d1r8sa_         156 LSNQ  159 (160)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            9875

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.86  E-value=1.1e-21  Score=181.53  Aligned_cols=154  Identities=24%  Similarity=0.204  Sum_probs=114.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCC--CCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhh--------hHHhhccC
Q 006490           14 RVVVVGDRGTGKSSLIAAAATESVP--EKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGK--------LNEELKRA   83 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~~~~~a   83 (643)
                      +|+|+|.+|||||||+|+|++.+..  ...+++.... ........+..+.+|||||+......        ...+++.|
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~-~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~a   85 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKR-LRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADV   85 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSC-EEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeecccCCccccc-ccceeeeeeeeeeecccccccccccccchhcccccccccccc
Confidence            6999999999999999999998742  2333322221 22234456788999999998654322        23567899


Q ss_pred             CEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCC
Q 006490           84 DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQ  163 (643)
Q Consensus        84 d~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  163 (643)
                      |++|+|+|++++.....  ..|.+.++....++|+++|+||+|+...     .++..+.+.+.++. ..++++||++|.|
T Consensus        86 d~il~v~D~~~~~~~~~--~~i~~~l~~~~~~~piilv~NK~Dl~~~-----~~~~~~~~~~~~~~-~~~~~iSA~~~~g  157 (178)
T d1wf3a1          86 NAVVWVVDLRHPPTPED--ELVARALKPLVGKVPILLVGNKLDAAKY-----PEEAMKAYHELLPE-AEPRMLSALDERQ  157 (178)
T ss_dssp             SEEEEEEETTSCCCHHH--HHHHHHHGGGTTTSCEEEEEECGGGCSS-----HHHHHHHHHHTSTT-SEEEECCTTCHHH
T ss_pred             cceeeeechhhhhcccc--cchhhheeccccchhhhhhhcccccccC-----HHHHHHHHHhhccc-CceEEEecCCCCC
Confidence            99999999988765443  3577888877778999999999998653     23444555555553 4689999999999


Q ss_pred             hhHHHHHHHHHHh
Q 006490          164 VPDVFYYAQKAVL  176 (643)
Q Consensus       164 i~~l~~~i~~~~~  176 (643)
                      |++|++.+.+.+.
T Consensus       158 i~~L~~~i~~~lp  170 (178)
T d1wf3a1         158 VAELKADLLALMP  170 (178)
T ss_dssp             HHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHhCC
Confidence            9999999988764

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.86  E-value=9.1e-22  Score=181.24  Aligned_cols=157  Identities=18%  Similarity=0.182  Sum_probs=117.2

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i  501 (643)
                      ..+||+++|++|||||||+++|+++.+.... +|...  .......  ....+.+||++|.+.+...  +..+++.+|++
T Consensus        11 k~~kIvlvG~~~vGKTSli~rl~~~~~~~~~-~t~~~--~~~~~~~--~~~~~~i~D~~g~~~~~~~--~~~~~~~~~~i   83 (173)
T d1e0sa_          11 KEMRILMLGLDAAGKTTILYKLKLGQSVTTI-PTVGF--NVETVTY--KNVKFNVWDVGGQDKIRPL--WRHYYTGTQGL   83 (173)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHTTCCCCEEEE-EETTE--EEEEEEE--TTEEEEEEEESCCGGGHHH--HGGGTTTCCEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhcCCCCCcc-ceeee--eEEEeec--cceeeEEecCCCcchhhhH--HHhhhcccceE
Confidence            4689999999999999999999988754322 33332  2333332  4567788999999888877  77889999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHH----HHhCCCCcEEeeeccC-C
Q 006490          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVT----QELGIEPPIPVSMKSK-D  576 (643)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~vSa~~g-~  576 (643)
                      ++|+|+++..++..+..|+....+.....  +.|+++|+||+|+.+.....+....+.    ...++ ++++|||++| |
T Consensus        84 i~v~D~s~~~~~~~~~~~l~~~~~~~~~~--~~piiiv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~-~~~e~SA~tg~g  160 (173)
T d1e0sa_          84 IFVVDCADRDRIDEARQELHRIINDREMR--DAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNW-YVQPSCATSGDG  160 (173)
T ss_dssp             EEEEETTCGGGHHHHHHHHHHHHTSGGGT--TCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCE-EEEECBTTTTBT
T ss_pred             EEEEecccchhHHHHHHHHHHHhhhcccc--cceeeeeeecccccccccHHHHHHHHHHHHHHhCCC-EEEEeeCCCCcC
Confidence            99999999999999988887766543333  799999999999976332222222111    11122 3789999999 9


Q ss_pred             HHHHHHHHHHHH
Q 006490          577 LNNVFSRIIWAA  588 (643)
Q Consensus       577 i~~l~~~l~~~~  588 (643)
                      ++++|++|.+.+
T Consensus       161 v~e~~~~l~~~~  172 (173)
T d1e0sa_         161 LYEGLTWLTSNY  172 (173)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhc
Confidence            999999998764

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.84  E-value=8.1e-21  Score=175.67  Aligned_cols=157  Identities=18%  Similarity=0.170  Sum_probs=112.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCcEEEEEEecCCchhhhh------hhccHHhhc
Q 006490          424 FRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK------ILSNKEALA  496 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~-~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~------~~~~~~~~~  496 (643)
                      -.|+|+|.+|||||||+|+|++.+...++. +.++...........  ...+.++||+|......      ......++.
T Consensus         6 ~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~   83 (178)
T d1wf3a1           6 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEG--RRQIVFVDTPGLHKPMDALGEFMDQEVYEALA   83 (178)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET--TEEEEEEECCCCCCCCSHHHHHHHHHHHHHTS
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeee--eeeeeecccccccccccccchhcccccccccc
Confidence            469999999999999999999988766554 333333333333333  45677899999532211      111456788


Q ss_pred             cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC-
Q 006490          497 SCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-  575 (643)
Q Consensus       497 ~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g-  575 (643)
                      .||++|+|+|++++.+.. ...|...+.....    ++|+++|+||+|+....  .+..+.+.+.++...+++|||++| 
T Consensus        84 ~ad~il~v~D~~~~~~~~-~~~i~~~l~~~~~----~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~iSA~~~~  156 (178)
T d1wf3a1          84 DVNAVVWVVDLRHPPTPE-DELVARALKPLVG----KVPILLVGNKLDAAKYP--EEAMKAYHELLPEAEPRMLSALDER  156 (178)
T ss_dssp             SCSEEEEEEETTSCCCHH-HHHHHHHHGGGTT----TSCEEEEEECGGGCSSH--HHHHHHHHHTSTTSEEEECCTTCHH
T ss_pred             cccceeeeechhhhhccc-ccchhhheecccc----chhhhhhhcccccccCH--HHHHHHHHhhcccCceEEEecCCCC
Confidence            999999999999875533 3444455544332    78999999999997643  344566677777767899999999 


Q ss_pred             CHHHHHHHHHHHHh
Q 006490          576 DLNNVFSRIIWAAE  589 (643)
Q Consensus       576 ~i~~l~~~l~~~~~  589 (643)
                      |++++++.|.+.+.
T Consensus       157 gi~~L~~~i~~~lp  170 (178)
T d1wf3a1         157 QVAELKADLLALMP  170 (178)
T ss_dssp             HHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHHhCC
Confidence            99999999998763

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=4.3e-21  Score=174.43  Aligned_cols=150  Identities=25%  Similarity=0.337  Sum_probs=113.3

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhh--------hHHhhc
Q 006490           12 GVRVVVVGDRGTGKSSLIAAAATESVP--EKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGK--------LNEELK   81 (643)
Q Consensus        12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~~~~   81 (643)
                      ++||+++|++|||||||+|+|++.+..  ...+++. .......+...+..+.++||+|..+....        ...++.
T Consensus         1 ~~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~   79 (161)
T d2gj8a1           1 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTT-RDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIE   79 (161)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCC-CSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCceEeecccccc-cceEeeeeeccCceeeeccccccccccccchhHHHHHHHHHHH
Confidence            479999999999999999999988743  3344422 22234456667889999999998754322        235688


Q ss_pred             cCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccC
Q 006490           82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM  161 (643)
Q Consensus        82 ~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  161 (643)
                      .+|++++++|..+..+.+... .|...++....++|+++|+||+|+......  .        .+++. .+++++||++|
T Consensus        80 ~~d~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~iilv~NK~Dl~~~~~~--~--------~~~~~-~~~~~iSAk~~  147 (161)
T d2gj8a1          80 QADRVLFMVDGTTTDAVDPAE-IWPEFIARLPAKLPITVVRNKADITGETLG--M--------SEVNG-HALIRLSARTG  147 (161)
T ss_dssp             TCSEEEEEEETTTCCCCSHHH-HCHHHHHHSCTTCCEEEEEECHHHHCCCCE--E--------EEETT-EEEEECCTTTC
T ss_pred             hccccceeeccccccchhhhh-hhhhhhhhcccccceeeccchhhhhhhHHH--H--------HHhCC-CcEEEEECCCC
Confidence            999999999999888777766 366777776678999999999998654322  1        11222 36999999999


Q ss_pred             CChhHHHHHHHHH
Q 006490          162 IQVPDVFYYAQKA  174 (643)
Q Consensus       162 ~gi~~l~~~i~~~  174 (643)
                      .||++|++++.+.
T Consensus       148 ~gi~~L~~~l~~~  160 (161)
T d2gj8a1         148 EGVDVLRNHLKQS  160 (161)
T ss_dssp             TTHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhh
Confidence            9999999998875

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.84  E-value=1.9e-20  Score=169.63  Aligned_cols=154  Identities=18%  Similarity=0.141  Sum_probs=117.5

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill  503 (643)
                      +||+|+|++|||||||+|+|+++++...+..+...   .....  +....+.+||++|.+.....  ...++..++++++
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~d~~g~~~~~~~--~~~~~~~~~~~i~   73 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN---VETVE--YKNISFTVWDVGGQDKIRPL--WRHYFQNTQGLIF   73 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCC---EEEEE--CSSCEEEEEECCCCGGGHHH--HHHHTTTCSEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccceeeE---EEEEe--eeeEEEEEecCCCcccchhh--hhhhhccceeEEE
Confidence            58999999999999999999998876655433222   22222  25667888999998887766  7788999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHH----HHHHHhCCCCcEEeeeccC-CHH
Q 006490          504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSA----RVTQELGIEPPIPVSMKSK-DLN  578 (643)
Q Consensus       504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~----~~~~~~~~~~~~~vSa~~g-~i~  578 (643)
                      ++|.+++.++.....|...+.......  ..|+++++||.|+.......+...    .+++..++ ++++|||++| |++
T Consensus        74 ~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~v~~k~d~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~SAktg~gi~  150 (160)
T d1r8sa_          74 VVDSNDRERVNEAREELMRMLAEDELR--DAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNW-YIQATCATSGDGLY  150 (160)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGT--TCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCE-EEEECBTTTTBTHH
T ss_pred             EEEecChHHHHHHHHHHHHHHHhhccc--CceEEEEeecccccccccHHHHHHHHHHHHHhhCCC-EEEEeECCCCCCHH
Confidence            999999999999988888877655444  789999999999876432222111    12222343 4899999999 999


Q ss_pred             HHHHHHHHH
Q 006490          579 NVFSRIIWA  587 (643)
Q Consensus       579 ~l~~~l~~~  587 (643)
                      ++|++|.+.
T Consensus       151 e~~~~l~~~  159 (160)
T d1r8sa_         151 EGLDWLSNQ  159 (160)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhc
Confidence            999999875

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.83  E-value=3e-20  Score=171.57  Aligned_cols=160  Identities=12%  Similarity=0.110  Sum_probs=115.2

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v   89 (643)
                      .+++||+|+|.+|||||||+++|.+..+....++.. .  ....+...+..+.+||+++.+.........+..++++++|
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~v   89 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIG-S--NVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVV   89 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSC-S--SCEEEEETTEEEEEEECCC----CGGGHHHHTTCCEEEEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCccccccc-e--eEEEEeecceEEEEeccccccccccchhhhhccceeeeee
Confidence            567999999999999999999999988765433321 1  1223344578999999999998888899999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHH-hcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHh--hcccceEEEeCcccCCChhH
Q 006490           90 YACNQQSTLSRLSSYWLPELR-RLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQ--FREIETCVECSATTMIQVPD  166 (643)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~l~-~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~gi~~  166 (643)
                      +|.++..++......+..... ....+.|+++|+||+|+......   .+....+...  .....++++|||++|+||++
T Consensus        90 ~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~---~~i~~~~~~~~~~~~~~~~~~~Sa~tg~Gi~e  166 (177)
T d1zj6a1          90 VDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTV---AEISQFLKLTSIKDHQWHIQACCALTGEGLCQ  166 (177)
T ss_dssp             EETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCH---HHHHHHHTGGGCCSSCEEEEECBTTTTBTHHH
T ss_pred             cccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCcH---HHHHHHHHHHhhHhcCCEEEEEeCCCCCCHHH
Confidence            999999998887643333332 22358999999999998765332   1111111111  11123699999999999999


Q ss_pred             HHHHHHHHH
Q 006490          167 VFYYAQKAV  175 (643)
Q Consensus       167 l~~~i~~~~  175 (643)
                      +++++.+.+
T Consensus       167 ~~~~L~~~l  175 (177)
T d1zj6a1         167 GLEWMMSRL  175 (177)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999998865

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.82  E-value=2.1e-20  Score=172.86  Aligned_cols=164  Identities=15%  Similarity=0.141  Sum_probs=113.0

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe-----e--eCCcccCCceeEEEEeCCCCCcchhhhHHhhcc
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-----R--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKR   82 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~-----~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   82 (643)
                      .+.++|+|+|+||+|||||+|+|++.......+....+.     .  ....+...+..+.++|++|...+......++..
T Consensus         3 ~k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~l~~   82 (179)
T d1wb1a4           3 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADI   82 (179)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTS
T ss_pred             CCCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCCccccccccccccccccchhhhhhh
Confidence            356799999999999999999999765322211111111     0  222333567889999999988888888899999


Q ss_pred             CCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcc--cceEEEeCccc
Q 006490           83 ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE--IETCVECSATT  160 (643)
Q Consensus        83 ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~  160 (643)
                      +|++++|+|+......+..  .....+...  ++|+++|+||+|+..........+..+.+.+....  ..++++|||++
T Consensus        83 ~d~~ilv~d~~~g~~~~~~--~~~~~~~~~--~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~iSA~~  158 (179)
T d1wb1a4          83 IDLALIVVDAKEGPKTQTG--EHMLILDHF--NIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKT  158 (179)
T ss_dssp             CCEEEEEEETTTCSCHHHH--HHHHHHHHT--TCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTT
T ss_pred             ccccccccccccccchhhh--hhhhhhhhc--CCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEccC
Confidence            9999999999876554432  345566666  89999999999997643221122233333332221  13689999999


Q ss_pred             CCChhHHHHHHHHHHhC
Q 006490          161 MIQVPDVFYYAQKAVLH  177 (643)
Q Consensus       161 ~~gi~~l~~~i~~~~~~  177 (643)
                      |.|+++|++.+.+.+..
T Consensus       159 g~gi~eL~~~I~~~l~~  175 (179)
T d1wb1a4         159 GFGVDELKNLIITTLNN  175 (179)
T ss_dssp             CTTHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHhcCCc
Confidence            99999999999887653

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=3.4e-20  Score=168.41  Aligned_cols=152  Identities=17%  Similarity=0.185  Sum_probs=108.0

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCcEEEEEEecCCchhh------hhhhccHHhh
Q 006490          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV------KKILSNKEAL  495 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~-~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~------~~~~~~~~~~  495 (643)
                      ++||+++|++|||||||+|+|++.+...++. |++........+...  .....++|++|....      ..+.++..++
T Consensus         1 ~~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~   78 (161)
T d2gj8a1           1 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHID--GMPLHIIDTAGLREASDEVERIGIERAWQEI   78 (161)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEET--TEEEEEEECCCCSCCSSHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeecc--CceeeeccccccccccccchhHHHHHHHHHH
Confidence            4799999999999999999999988775554 433332333334443  345667888883221      1223356678


Q ss_pred             ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC
Q 006490          496 ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK  575 (643)
Q Consensus       496 ~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g  575 (643)
                      ..+|++++++|++++.++.....|...+.....    ++|+++|+||+|+..+.....       +.+..+++++||++|
T Consensus        79 ~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~----~~~iilv~NK~Dl~~~~~~~~-------~~~~~~~~~iSAk~~  147 (161)
T d2gj8a1          79 EQADRVLFMVDGTTTDAVDPAEIWPEFIARLPA----KLPITVVRNKADITGETLGMS-------EVNGHALIRLSARTG  147 (161)
T ss_dssp             HTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCT----TCCEEEEEECHHHHCCCCEEE-------EETTEEEEECCTTTC
T ss_pred             Hhccccceeeccccccchhhhhhhhhhhhhccc----ccceeeccchhhhhhhHHHHH-------HhCCCcEEEEECCCC
Confidence            999999999999988776666655555554433    799999999999876433211       122235999999999


Q ss_pred             -CHHHHHHHHHHH
Q 006490          576 -DLNNVFSRIIWA  587 (643)
Q Consensus       576 -~i~~l~~~l~~~  587 (643)
                       |+++++++|.+.
T Consensus       148 ~gi~~L~~~l~~~  160 (161)
T d2gj8a1         148 EGVDVLRNHLKQS  160 (161)
T ss_dssp             TTHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhh
Confidence             999999999875

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.80  E-value=3.7e-19  Score=162.39  Aligned_cols=160  Identities=13%  Similarity=0.114  Sum_probs=120.9

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEE
Q 006490           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (643)
Q Consensus        11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~   90 (643)
                      +++||+|+|++|||||||+|+|+++.+....++   ..........+++.+.+||++|...........+..++++++++
T Consensus         4 ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (169)
T d1upta_           4 REMRILILGLDGAGKTTILYRLQVGEVVTTIPT---IGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVV   80 (169)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCC---SSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCCcceecc---cceeeeeeccCceEEEEeeccccccccccchhhhhhhhhhhhhh
Confidence            468999999999999999999999988654443   22222344566789999999999988888889999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHHh-cCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhh--cccceEEEeCcccCCChhHH
Q 006490           91 ACNQQSTLSRLSSYWLPELRR-LEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF--REIETCVECSATTMIQVPDV  167 (643)
Q Consensus        91 d~~~~~s~~~~~~~~~~~l~~-~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~gi~~l  167 (643)
                      |+.+..+.......+...+.. .....|+++|+||.|+......   .+....+...+  ....++++|||++|.||+++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~---~~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e~  157 (169)
T d1upta_          81 DSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTS---SEMANSLGLPALKDRKWQIFKTSATKGTGLDEA  157 (169)
T ss_dssp             ETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH---HHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHH
T ss_pred             hhhhcchhhhccchhhhhhhhhccccceEEEEEeeccccccccH---HHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHH
Confidence            999998888887655555533 2357899999999999765432   11111111111  11237999999999999999


Q ss_pred             HHHHHHHHh
Q 006490          168 FYYAQKAVL  176 (643)
Q Consensus       168 ~~~i~~~~~  176 (643)
                      |+++.+.+.
T Consensus       158 ~~~l~~~l~  166 (169)
T d1upta_         158 MEWLVETLK  166 (169)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988764

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.80  E-value=3.8e-19  Score=164.00  Aligned_cols=159  Identities=17%  Similarity=0.163  Sum_probs=112.7

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (643)
                      ++.+||+|+|.+|||||||+++|.+.++..... +.....  .....  ....+.++|..+.+.....  ....+..+++
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~~-~~~~~~--~~~~~--~~~~~~~~d~~~~~~~~~~--~~~~~~~~~~   85 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSP-TIGSNV--EEIVI--NNTRFLMWDIGGQESLRSS--WNTYYTNTEF   85 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEEC-CSCSSC--EEEEE--TTEEEEEEECCC----CGG--GHHHHTTCCE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCcccc-ccceeE--EEEee--cceEEEEeccccccccccc--hhhhhcccee
Confidence            345899999999999999999999988765543 222222  11222  3456778999988776665  7778899999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHH----hCCCCcEEeeeccC-
Q 006490          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQE----LGIEPPIPVSMKSK-  575 (643)
Q Consensus       501 illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~vSa~~g-  575 (643)
                      +++|+|.++..++.....+...........  +.|+++|+||+|+.......+..+.+...    .++ ++++|||++| 
T Consensus        86 ~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~-~~~~~Sa~tg~  162 (177)
T d1zj6a1          86 VIVVVDSTDRERISVTREELYKMLAHEDLR--KAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQW-HIQACCALTGE  162 (177)
T ss_dssp             EEEEEETTCTTTHHHHHHHHHHHHTSGGGT--TCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCE-EEEECBTTTTB
T ss_pred             eeeecccccccchhhhhhhhhhhhhccccc--ceEEEEEEEcccccccCcHHHHHHHHHHHhhHhcCC-EEEEEeCCCCC
Confidence            999999999999888776665555443333  89999999999987644322222222111    122 4899999999 


Q ss_pred             CHHHHHHHHHHHHh
Q 006490          576 DLNNVFSRIIWAAE  589 (643)
Q Consensus       576 ~i~~l~~~l~~~~~  589 (643)
                      |+++++++|.+.++
T Consensus       163 Gi~e~~~~L~~~lk  176 (177)
T d1zj6a1         163 GLCQGLEWMMSRLK  176 (177)
T ss_dssp             THHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHhC
Confidence            99999999998764

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.80  E-value=2.9e-19  Score=165.36  Aligned_cols=161  Identities=22%  Similarity=0.143  Sum_probs=108.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhh-----hhhhccHHhhccCC
Q 006490          425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV-----KKILSNKEALASCD  499 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~-----~~~~~~~~~~~~ad  499 (643)
                      .|+|+|+||||||||+|+|++........+..+....+...... ...++.+||++|....     ....+....+..+|
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~   81 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVS-EEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR   81 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECS-SSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeeceeeec-CCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhh
Confidence            48999999999999999999987665555433333444444444 4556778999994211     11223556789999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC-CHH
Q 006490          500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLN  578 (643)
Q Consensus       500 ~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g-~i~  578 (643)
                      ++++++|+.... +.....+...+....... .++|+++|+||+|+..+.... ...+.....+. +++++||++| |++
T Consensus        82 ~~~~~~d~~~~~-~~~~~~~~~~~~~~~~~~-~~~p~iiv~NK~D~~~~~~~~-~~~~~~~~~~~-~~~~iSA~tg~gid  157 (180)
T d1udxa2          82 VLLYVLDAADEP-LKTLETLRKEVGAYDPAL-LRRPSLVALNKVDLLEEEAVK-ALADALAREGL-AVLPVSALTGAGLP  157 (180)
T ss_dssp             EEEEEEETTSCH-HHHHHHHHHHHHHHCHHH-HHSCEEEEEECCTTSCHHHHH-HHHHHHHTTTS-CEEECCTTTCTTHH
T ss_pred             hhhhhccccccc-ccchhhhhhhhhcccccc-chhhhhhhhhhhhhhhHHHHH-HHHHHHHhcCC-eEEEEEcCCCCCHH
Confidence            999999987642 233333333222211100 068999999999998754333 23333344455 4999999999 999


Q ss_pred             HHHHHHHHHHhC
Q 006490          579 NVFSRIIWAAEH  590 (643)
Q Consensus       579 ~l~~~l~~~~~~  590 (643)
                      +|++.|.+.+..
T Consensus       158 ~L~~~i~~~l~~  169 (180)
T d1udxa2         158 ALKEALHALVRS  169 (180)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhh
Confidence            999999998863

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.80  E-value=2.7e-19  Score=165.29  Aligned_cols=160  Identities=15%  Similarity=0.180  Sum_probs=106.6

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccce-------EEEEEEcCCCcEEEEEEecCCchhhhhhhccHHh
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQY-------AVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEA  494 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~-------~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~  494 (643)
                      +.++|+|+|+||+|||||+|+|++.......+.++....       ....+..  ....+.++|++|+..+...  +...
T Consensus         4 k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~d~~g~~~~~~~--~~~~   79 (179)
T d1wb1a4           4 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKL--ENYRITLVDAPGHADLIRA--VVSA   79 (179)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEE--TTEEEEECCCSSHHHHHHH--HHHH
T ss_pred             CCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeecccccccccc--CCccccccccccccccccc--hhhh
Confidence            457999999999999999999998654443332111111       1111122  3345667999998877665  6778


Q ss_pred             hccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc---HHHHHHHHHHh-CC--CCcE
Q 006490          495 LASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA---VQDSARVTQEL-GI--EPPI  568 (643)
Q Consensus       495 ~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~---~~~~~~~~~~~-~~--~~~~  568 (643)
                      +..+|++++|+|++++...+ .......+...      ++|+++|+||+|+......   .+..+.+.+.. ++  .+++
T Consensus        80 l~~~d~~ilv~d~~~g~~~~-~~~~~~~~~~~------~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv  152 (179)
T d1wb1a4          80 ADIIDLALIVVDAKEGPKTQ-TGEHMLILDHF------NIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSII  152 (179)
T ss_dssp             TTSCCEEEEEEETTTCSCHH-HHHHHHHHHHT------TCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEE
T ss_pred             hhhccccccccccccccchh-hhhhhhhhhhc------CCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEE
Confidence            89999999999999876533 33333444443      8999999999999875432   22233333322 22  3689


Q ss_pred             EeeeccC-CHHHHHHHHHHHHhCCC
Q 006490          569 PVSMKSK-DLNNVFSRIIWAAEHPH  592 (643)
Q Consensus       569 ~vSa~~g-~i~~l~~~l~~~~~~~~  592 (643)
                      +|||++| |+++|++.|.+.+..+.
T Consensus       153 ~iSA~~g~gi~eL~~~I~~~l~~~e  177 (179)
T d1wb1a4         153 PISAKTGFGVDELKNLIITTLNNAE  177 (179)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHHSC
T ss_pred             EEEccCCcCHHHHHHHHHhcCCccc
Confidence            9999999 99999999999886543

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.79  E-value=4.1e-19  Score=165.28  Aligned_cols=162  Identities=17%  Similarity=0.181  Sum_probs=111.8

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHhcCCC--CCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcch------------
Q 006490            8 SSRTGVRVVVVGDRGTGKSSLIAAAATESV--PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENK------------   73 (643)
Q Consensus         8 ~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~------------   73 (643)
                      ...+.+||+|+|++|||||||+|+|++...  ..+.+++ ........+..++..+.++||||.....            
T Consensus         4 ~~~~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~   82 (186)
T d1mkya2           4 EITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGT-TRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSN   82 (186)
T ss_dssp             CCCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC-------CCEEEEETTEEEEESSCSCC-----------CCSCC
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHCCCcceeeccccc-ccccceeeeccCCceeeeeccCCccccccccccccccchh
Confidence            345679999999999999999999998773  3333332 1222333455667889999999975322            


Q ss_pred             hhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhc--ccc
Q 006490           74 GKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR--EIE  151 (643)
Q Consensus        74 ~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~--~~~  151 (643)
                      .....+++.+|++++|+|+......+..  .+...++..  ++|+|+|+||+|+...... ..++..+.+.+.+.  ...
T Consensus        83 ~~~~~~~~~~dvii~v~d~~~~~~~~~~--~~~~~~~~~--~~~~i~v~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~  157 (186)
T d1mkya2          83 YRVVDSIEKADVVVIVLDATQGITRQDQ--RMAGLMERR--GRASVVVFNKWDLVVHREK-RYDEFTKLFREKLYFIDYS  157 (186)
T ss_dssp             HHHHHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHHT--TCEEEEEEECGGGSTTGGG-CHHHHHHHHHHHCGGGTTS
T ss_pred             HHHHHHHhcCCEEEEeecccccchhhHH--HHHHHHHHc--CCceeeeccchhhhcchhh-hhhhHHHHHHHHhcccCCC
Confidence            2333567899999999998776554442  477777776  7999999999998765433 23333333333332  234


Q ss_pred             eEEEeCcccCCChhHHHHHHHHHH
Q 006490          152 TCVECSATTMIQVPDVFYYAQKAV  175 (643)
Q Consensus       152 ~~~~~Sa~~~~gi~~l~~~i~~~~  175 (643)
                      +++++||++|.|+++|++.+.+.+
T Consensus       158 ~i~~vSa~~g~gv~~L~~~i~~~~  181 (186)
T d1mkya2         158 PLIFTSADKGWNIDRMIDAMNLAY  181 (186)
T ss_dssp             CEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHHH
Confidence            789999999999999999987654

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.79  E-value=4.9e-19  Score=163.79  Aligned_cols=157  Identities=19%  Similarity=0.171  Sum_probs=104.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcch-------hhhHHhhccCCE
Q 006490           14 RVVVVGDRGTGKSSLIAAAATESVP-EKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENK-------GKLNEELKRADA   85 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~ad~   85 (643)
                      .|+|+|+||||||||+|+|++.... .+.++..............+..+.+|||||+....       ...-..+..+++
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~   82 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRV   82 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeeceeeecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhhh
Confidence            4999999999999999999987642 22333222333434455567789999999975321       122256788999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHh---cCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCC
Q 006490           86 VVLTYACNQQSTLSRLSSYWLPELRR---LEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMI  162 (643)
Q Consensus        86 il~v~d~~~~~s~~~~~~~~~~~l~~---~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  162 (643)
                      +++++|..... ..... .+...+..   ...++|+++|+||+|+......   .+ ........  ..+++++||++|.
T Consensus        83 ~~~~~d~~~~~-~~~~~-~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~~---~~-~~~~~~~~--~~~~~~iSA~tg~  154 (180)
T d1udxa2          83 LLYVLDAADEP-LKTLE-TLRKEVGAYDPALLRRPSLVALNKVDLLEEEAV---KA-LADALARE--GLAVLPVSALTGA  154 (180)
T ss_dssp             EEEEEETTSCH-HHHHH-HHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHH---HH-HHHHHHTT--TSCEEECCTTTCT
T ss_pred             hhhhccccccc-ccchh-hhhhhhhccccccchhhhhhhhhhhhhhhHHHH---HH-HHHHHHhc--CCeEEEEEcCCCC
Confidence            99999975442 22222 23333322   2236899999999999754222   12 22222222  2479999999999


Q ss_pred             ChhHHHHHHHHHHhCC
Q 006490          163 QVPDVFYYAQKAVLHP  178 (643)
Q Consensus       163 gi~~l~~~i~~~~~~~  178 (643)
                      ||++|++.+.+.+...
T Consensus       155 gid~L~~~i~~~l~~~  170 (180)
T d1udxa2         155 GLPALKEALHALVRST  170 (180)
T ss_dssp             THHHHHHHHHHHHHTS
T ss_pred             CHHHHHHHHHHHHhhc
Confidence            9999999998877543

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.79  E-value=2.6e-19  Score=166.59  Aligned_cols=161  Identities=16%  Similarity=0.207  Sum_probs=105.2

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-C-CcccceEEEEEEcCCCcEEEEEEecCCchhhhh----------h
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-P-TTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK----------I  488 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~-~-t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~----------~  488 (643)
                      ...+||+|+|.+|||||||+|+|++.....+.. + ++.. .....+...  ...+.++|++|......          .
T Consensus         6 ~~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~-~~~~~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~~~   82 (186)
T d1mkya2           6 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRD-PVDDEVFID--GRKYVFVDTAGLRRKSRVEPRTVEKYSN   82 (186)
T ss_dssp             CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC-------CCEEEEET--TEEEEESSCSCC-----------CCSCC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccc-cceeeeccC--CceeeeeccCCccccccccccccccchh
Confidence            346999999999999999999999987655443 2 3222 111222232  23445566666422111          1


Q ss_pred             hccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc--HHHHHHHHHH---hC
Q 006490          489 LSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA--VQDSARVTQE---LG  563 (643)
Q Consensus       489 ~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~--~~~~~~~~~~---~~  563 (643)
                      ......++.||++++|+|++.+.. .....+...+...      +.|+|+|+||+|+......  .+..+.+.+.   .+
T Consensus        83 ~~~~~~~~~~dvii~v~d~~~~~~-~~~~~~~~~~~~~------~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  155 (186)
T d1mkya2          83 YRVVDSIEKADVVVIVLDATQGIT-RQDQRMAGLMERR------GRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFID  155 (186)
T ss_dssp             HHHHHHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHHT------TCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGT
T ss_pred             HHHHHHHhcCCEEEEeecccccch-hhHHHHHHHHHHc------CCceeeeccchhhhcchhhhhhhHHHHHHHHhcccC
Confidence            125567789999999999998755 3344555555554      8999999999998754432  2222333333   34


Q ss_pred             CCCcEEeeeccC-CHHHHHHHHHHHHhCC
Q 006490          564 IEPPIPVSMKSK-DLNNVFSRIIWAAEHP  591 (643)
Q Consensus       564 ~~~~~~vSa~~g-~i~~l~~~l~~~~~~~  591 (643)
                      +.+++++||++| |+++|++.|.+.+..+
T Consensus       156 ~~~i~~vSa~~g~gv~~L~~~i~~~~~~~  184 (186)
T d1mkya2         156 YSPLIFTSADKGWNIDRMIDAMNLAYASY  184 (186)
T ss_dssp             TSCEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence            557999999999 9999999998877643

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.79  E-value=2.5e-18  Score=156.82  Aligned_cols=159  Identities=18%  Similarity=0.173  Sum_probs=117.1

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i  501 (643)
                      ..+||+++|++|||||||+|+|+++++...+ +|...  .......  ....+.+++.++.+.....  ....+..++++
T Consensus         4 ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~~-~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~   76 (169)
T d1upta_           4 REMRILILGLDGAGKTTILYRLQVGEVVTTI-PTIGF--NVETVTY--KNLKFQVWDLGGLTSIRPY--WRCYYSNTDAV   76 (169)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCCCCC-CCSSE--EEEEEEE--TTEEEEEEEECCCGGGGGG--GGGGCTTCSEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCCccee-cccce--eeeeecc--CceEEEEeecccccccccc--chhhhhhhhhh
Confidence            3589999999999999999999999876543 33332  2222222  3456677888888777666  66778999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHH----hCCCCcEEeeeccC-C
Q 006490          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQE----LGIEPPIPVSMKSK-D  576 (643)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~vSa~~g-~  576 (643)
                      ++++|+.+..++.....+...........  ..|+++|+||+|+.......+....+...    .++ ++++|||++| |
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~iv~nk~Dl~~~~~~~~i~~~~~~~~~~~~~~-~~~~~SA~~g~g  153 (169)
T d1upta_          77 IYVVDSCDRDRIGISKSELVAMLEEEELR--KAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKW-QIFKTSATKGTG  153 (169)
T ss_dssp             EEEEETTCCTTHHHHHHHHHHHHTCGGGT--TCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCE-EEEECCTTTCTT
T ss_pred             hhhhhhhhcchhhhccchhhhhhhhhccc--cceEEEEEeeccccccccHHHHHHHHHHHHHhcCCC-EEEEEeCCCCCC
Confidence            99999999888887777665555443333  78999999999998754433333333222    233 4899999999 9


Q ss_pred             HHHHHHHHHHHHhC
Q 006490          577 LNNVFSRIIWAAEH  590 (643)
Q Consensus       577 i~~l~~~l~~~~~~  590 (643)
                      ++++|++|++.+..
T Consensus       154 v~e~~~~l~~~l~~  167 (169)
T d1upta_         154 LDEAMEWLVETLKS  167 (169)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999998753

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.78  E-value=3e-19  Score=161.79  Aligned_cols=148  Identities=18%  Similarity=0.199  Sum_probs=106.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCC--CCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcch---------hhhHHhhc
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATESV--PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENK---------GKLNEELK   81 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---------~~~~~~~~   81 (643)
                      +||+|+|+||||||||+|+|++...  ....+++. .......+...+..+.+|||||.....         ......+.
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~~   79 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTT-RDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIE   79 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCS-SCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeecccccc-ccceeEEEEeCCeeEEeccccccccCCccHHHHHHHHHHHHHHH
Confidence            5899999999999999999998763  33333322 222444556678899999999964211         12234578


Q ss_pred             cCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccC
Q 006490           82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM  161 (643)
Q Consensus        82 ~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  161 (643)
                      .+|++++|+|++++...+...  +...+    ...|+++++||+|+......       +.+...++...+++++||++|
T Consensus        80 ~ad~ii~v~d~~~~~~~~~~~--~~~~~----~~~~~i~~~~k~d~~~~~~~-------~~~~~~~~~~~~~~~vSA~~g  146 (160)
T d1xzpa2          80 KADIVLFVLDASSPLDEEDRK--ILERI----KNKRYLVVINKVDVVEKINE-------EEIKNKLGTDRHMVKISALKG  146 (160)
T ss_dssp             HCSEEEEEEETTSCCCHHHHH--HHHHH----TTSSEEEEEEECSSCCCCCH-------HHHHHHHTCSTTEEEEEGGGT
T ss_pred             hCCEEEEEEeCCCCcchhhhh--hhhhc----ccccceeeeeeccccchhhh-------HHHHHHhCCCCcEEEEECCCC
Confidence            899999999999887766543  22222    36799999999998764322       334445555567999999999


Q ss_pred             CChhHHHHHHHHH
Q 006490          162 IQVPDVFYYAQKA  174 (643)
Q Consensus       162 ~gi~~l~~~i~~~  174 (643)
                      .||++|++.+.+.
T Consensus       147 ~gi~~L~~~I~ke  159 (160)
T d1xzpa2         147 EGLEKLEESIYRE  159 (160)
T ss_dssp             CCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhc
Confidence            9999999988763

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.78  E-value=9.1e-19  Score=160.52  Aligned_cols=154  Identities=20%  Similarity=0.231  Sum_probs=100.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCC-C-CcccceEEEEEEcCCCcEEEEEEecCCchhhh-------hhhccHHhh
Q 006490          425 RCLLFGPQNAGKSALLNSFLERPFSENYA-P-TTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK-------KILSNKEAL  495 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~~~~~~~~-~-t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~-------~~~~~~~~~  495 (643)
                      .|+|+|++|||||||+|+|++.....++. + ++.... ...+..  ....+..+|++|.....       ....+...+
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~-~~~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~   78 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPV-QDTVEW--YGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMI   78 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------CCS-EEEEEE--TTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceecccCceeeccc-cccccc--cccccccccccceeeeecccccccccccccccc
Confidence            68999999999999999999987765544 3 333322 222322  34566778888831111       111245667


Q ss_pred             ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC
Q 006490          496 ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK  575 (643)
Q Consensus       496 ~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g  575 (643)
                      ..||+++++.|++++... ....++..+...      ++|+++|+||+|+.++.. .+...++ .+.+..+++++||++|
T Consensus        79 ~~ad~i~~~~~~~~~~~~-~~~~~~~~l~~~------~~pviiv~NK~Dl~~~~~-~~~~~~~-~~~~~~~~i~iSAk~g  149 (171)
T d1mkya1          79 READLVLFVVDGKRGITK-EDESLADFLRKS------TVDTILVANKAENLREFE-REVKPEL-YSLGFGEPIPVSAEHN  149 (171)
T ss_dssp             TTCSEEEEEEETTTCCCH-HHHHHHHHHHHH------TCCEEEEEESCCSHHHHH-HHTHHHH-GGGSSCSCEECBTTTT
T ss_pred             ccCcEEEEeecccccccc-cccccccccccc------cccccccchhhhhhhhhh-hHHHHHH-HhcCCCCeEEEecCCC
Confidence            899999999999887653 345555556555      899999999999875321 2222222 2345666899999999


Q ss_pred             -CHHHHHHHHHHHHhC
Q 006490          576 -DLNNVFSRIIWAAEH  590 (643)
Q Consensus       576 -~i~~l~~~l~~~~~~  590 (643)
                       |+++++++|.+.+..
T Consensus       150 ~gid~L~~~i~~~l~e  165 (171)
T d1mkya1         150 INLDTMLETIIKKLEE  165 (171)
T ss_dssp             BSHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhCCC
Confidence             999999999998753

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.77  E-value=3.5e-18  Score=155.04  Aligned_cols=153  Identities=14%  Similarity=0.255  Sum_probs=112.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECC
Q 006490           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACN   93 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~   93 (643)
                      ||+|+|++|||||||+|+|+++.+....|+ .+.+..  .....+....+||++|...+......++..++++++++|.+
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~~~~~t-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~   78 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLATLQPT-WHPTSE--ELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAA   78 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCCCCC-CSCEEE--EECCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEETT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCeeece-eeEeEE--EeccCCeeEEEEeeccchhhhhhHhhhhhheeeeeeecccc
Confidence            899999999999999999999987654433 333332  34455678999999999888888899999999999999999


Q ss_pred             CcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCCCCCccchhhhhhhHHH-------Hhhc--ccceEEEeCcccCC
Q 006490           94 QQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIM-------QQFR--EIETCVECSATTMI  162 (643)
Q Consensus        94 ~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~-------~~~~--~~~~~~~~Sa~~~~  162 (643)
                      +..++..... |.......  ..+.|+++++||.|+......   .+..+.+.       ..+.  ...++++|||++|+
T Consensus        79 ~~~~~~~~~~-~~~~~~~~~~~~~~~i~i~~~k~d~~~~~~~---~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~  154 (166)
T d2qtvb1          79 DPERFDEARV-ELDALFNIAELKDVPFVILGNKIDAPNAVSE---AELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRN  154 (166)
T ss_dssp             CGGGHHHHHH-HHHHHHTCTTTTTCCEEEEEECTTSSSCCCH---HHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTTB
T ss_pred             chhhhhhhhH-HHHhhhhhhccCCceEEEEeccccccccCCH---HHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCCC
Confidence            9999888875 44444332  357899999999998754221   11111110       0011  01258999999999


Q ss_pred             ChhHHHHHHHH
Q 006490          163 QVPDVFYYAQK  173 (643)
Q Consensus       163 gi~~l~~~i~~  173 (643)
                      ||+|+|+++.+
T Consensus       155 Gv~e~~~~l~~  165 (166)
T d2qtvb1         155 GYLEAFQWLSQ  165 (166)
T ss_dssp             SHHHHHHHHTT
T ss_pred             CHHHHHHHHhC
Confidence            99999998753

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.77  E-value=1e-18  Score=160.12  Aligned_cols=153  Identities=18%  Similarity=0.173  Sum_probs=103.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCC--CCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcch---------hhhHHhhcc
Q 006490           14 RVVVVGDRGTGKSSLIAAAATESVP--EKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENK---------GKLNEELKR   82 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---------~~~~~~~~~   82 (643)
                      +|+|+|++|||||||+|+|++....  ...+++. .......+......+.++||+|+....         .....++..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t-~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~   80 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVT-RDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE   80 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceecccCcee-eccccccccccccccccccccceeeeecccccccccccccccccc
Confidence            6999999999999999999987642  3333321 112333456677889999999965322         122255789


Q ss_pred             CCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCC
Q 006490           83 ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMI  162 (643)
Q Consensus        83 ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  162 (643)
                      +|++++++|.+.......  ..+...++..  ++|+|+|+||+|+...     .......-..+++ ...++++||++|.
T Consensus        81 ad~i~~~~~~~~~~~~~~--~~~~~~l~~~--~~pviiv~NK~Dl~~~-----~~~~~~~~~~~~~-~~~~i~iSAk~g~  150 (171)
T d1mkya1          81 ADLVLFVVDGKRGITKED--ESLADFLRKS--TVDTILVANKAENLRE-----FEREVKPELYSLG-FGEPIPVSAEHNI  150 (171)
T ss_dssp             CSEEEEEEETTTCCCHHH--HHHHHHHHHH--TCCEEEEEESCCSHHH-----HHHHTHHHHGGGS-SCSCEECBTTTTB
T ss_pred             CcEEEEeecccccccccc--cccccccccc--cccccccchhhhhhhh-----hhhHHHHHHHhcC-CCCeEEEecCCCC
Confidence            999999999777665544  3577888877  7999999999998642     1111111112223 2357999999999


Q ss_pred             ChhHHHHHHHHHHhC
Q 006490          163 QVPDVFYYAQKAVLH  177 (643)
Q Consensus       163 gi~~l~~~i~~~~~~  177 (643)
                      ||++|++++.+.+..
T Consensus       151 gid~L~~~i~~~l~e  165 (171)
T d1mkya1         151 NLDTMLETIIKKLEE  165 (171)
T ss_dssp             SHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhCCC
Confidence            999999999987654

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.77  E-value=4e-18  Score=154.66  Aligned_cols=153  Identities=17%  Similarity=0.201  Sum_probs=111.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEEE
Q 006490          425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV  504 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv  504 (643)
                      ||+++|++|||||||+|+|+++++... .||....  ...+..  ......++|+.|.......  ....+..+++++++
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~~~-~~t~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~   74 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLATL-QPTWHPT--SEELAI--GNIKFTTFDLGGHIQARRL--WKDYFPEVNGIVFL   74 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCC-CCCCSCE--EEEECC--TTCCEEEEECCCSGGGGGG--GGGGCTTCSEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCee-eceeeEe--EEEecc--CCeeEEEEeeccchhhhhh--Hhhhhhheeeeeee
Confidence            799999999999999999999987643 3454432  223333  3445667999998777666  67788999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHH-------HHhCC---CCcEEeeecc
Q 006490          505 YDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVT-------QELGI---EPPIPVSMKS  574 (643)
Q Consensus       505 ~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~-------~~~~~---~~~~~vSa~~  574 (643)
                      +|.++..++.....+...........  +.|+++++||.|+.......+..+.+.       .....   .++++|||++
T Consensus        75 ~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~i~~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~t  152 (166)
T d2qtvb1          75 VDAADPERFDEARVELDALFNIAELK--DVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVM  152 (166)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCTTTT--TCCEEEEEECTTSSSCCCHHHHHHHHTCSSCCC---CCSSCCEEEEEEBTTT
T ss_pred             ccccchhhhhhhhHHHHhhhhhhccC--CceEEEEeccccccccCCHHHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCC
Confidence            99999999888888777766555444  899999999999876332222222111       00010   1379999999


Q ss_pred             C-CHHHHHHHHHH
Q 006490          575 K-DLNNVFSRIIW  586 (643)
Q Consensus       575 g-~i~~l~~~l~~  586 (643)
                      | |++++|++|.+
T Consensus       153 g~Gv~e~~~~l~~  165 (166)
T d2qtvb1         153 RNGYLEAFQWLSQ  165 (166)
T ss_dssp             TBSHHHHHHHHTT
T ss_pred             CCCHHHHHHHHhC
Confidence            9 99999999864

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.77  E-value=3.8e-19  Score=165.37  Aligned_cols=158  Identities=15%  Similarity=0.143  Sum_probs=104.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCCCCCeeeCCcccCCceeEEEEeCCCCCc----chhh---hHHhhccCCE
Q 006490           14 RVVVVGDRGTGKSSLIAAAATESVP-EKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLE----NKGK---LNEELKRADA   85 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----~~~~---~~~~~~~ad~   85 (643)
                      +|+|+|+||||||||+|+|++.... .+.++++...........++..+.+|||||+..    ....   .-..+..++.
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~   82 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRV   82 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCE
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEecCCcEEEEecCCCcccCchHHHHHHHHHHHHHHHhhh
Confidence            5999999999999999999987742 223332222223223334566799999999632    1111   2244677899


Q ss_pred             EEEEEECCCcccHHHHHH--HHHHHHHh---cCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCccc
Q 006490           86 VVLTYACNQQSTLSRLSS--YWLPELRR---LEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATT  160 (643)
Q Consensus        86 il~v~d~~~~~s~~~~~~--~~~~~l~~---~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  160 (643)
                      ++++++............  .+......   ...++|+++|+||+|+...      .+..+.+.+.+....+++++||++
T Consensus        83 i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~------~~~~~~~~~~~~~~~~v~~iSA~~  156 (185)
T d1lnza2          83 IVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA------AENLEAFKEKLTDDYPVFPISAVT  156 (185)
T ss_dssp             EEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH------HHHHHHHHHHCCSCCCBCCCSSCC
T ss_pred             hhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhH------HHHHHHHHHHhccCCcEEEEECCC
Confidence            999998765533222211  11111111   1247899999999998742      233455666665555789999999


Q ss_pred             CCChhHHHHHHHHHHhC
Q 006490          161 MIQVPDVFYYAQKAVLH  177 (643)
Q Consensus       161 ~~gi~~l~~~i~~~~~~  177 (643)
                      |.||++|++.+.+.+..
T Consensus       157 g~Gi~~L~~~i~~~L~~  173 (185)
T d1lnza2         157 REGLRELLFEVANQLEN  173 (185)
T ss_dssp             SSTTHHHHHHHHHHHTS
T ss_pred             CCCHHHHHHHHHHhhhh
Confidence            99999999999988743

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.77  E-value=5.9e-19  Score=159.87  Aligned_cols=149  Identities=19%  Similarity=0.233  Sum_probs=102.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCcEEEEEEecCCchhh-------hhhhccHHhh
Q 006490          424 FRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV-------KKILSNKEAL  495 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~-~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~-------~~~~~~~~~~  495 (643)
                      +||+++|+||||||||+|+|++.+...++. +.++.......+...  ...+.++|++|....       ..+.++...+
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~   78 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIR--GILFRIVDTAGVRSETNDLVERLGIERTLQEI   78 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEET--TEEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeC--CeeEEeccccccccCCccHHHHHHHHHHHHHH
Confidence            689999999999999999999987666554 322222222233333  356677999983111       1122355668


Q ss_pred             ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCC-CCcEEeeecc
Q 006490          496 ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGI-EPPIPVSMKS  574 (643)
Q Consensus       496 ~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~vSa~~  574 (643)
                      ..+|++++|+|++++...+.. .+...+    .    ..++++++||+|+.+...    .+++...++. .++++|||++
T Consensus        79 ~~ad~ii~v~d~~~~~~~~~~-~~~~~~----~----~~~~i~~~~k~d~~~~~~----~~~~~~~~~~~~~~~~vSA~~  145 (160)
T d1xzpa2          79 EKADIVLFVLDASSPLDEEDR-KILERI----K----NKRYLVVINKVDVVEKIN----EEEIKNKLGTDRHMVKISALK  145 (160)
T ss_dssp             HHCSEEEEEEETTSCCCHHHH-HHHHHH----T----TSSEEEEEEECSSCCCCC----HHHHHHHHTCSTTEEEEEGGG
T ss_pred             HhCCEEEEEEeCCCCcchhhh-hhhhhc----c----cccceeeeeeccccchhh----hHHHHHHhCCCCcEEEEECCC
Confidence            899999999999998764432 222222    1    678999999999987533    2334444443 3689999999


Q ss_pred             C-CHHHHHHHHHHH
Q 006490          575 K-DLNNVFSRIIWA  587 (643)
Q Consensus       575 g-~i~~l~~~l~~~  587 (643)
                      | |+++|+++|.+.
T Consensus       146 g~gi~~L~~~I~ke  159 (160)
T d1xzpa2         146 GEGLEKLEESIYRE  159 (160)
T ss_dssp             TCCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHhc
Confidence            9 999999998764

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.76  E-value=3.3e-18  Score=158.86  Aligned_cols=162  Identities=14%  Similarity=0.042  Sum_probs=106.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhh-----hhccHHhhccCC
Q 006490          425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK-----ILSNKEALASCD  499 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~-----~~~~~~~~~~ad  499 (643)
                      +|+|+|+||||||||+|+|++........+.++.+......... ....+.++|++|......     ..+....+..++
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~-~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~   81 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETD-DGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR   81 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECS-SSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEec-CCcEEEEecCCCcccCchHHHHHHHHHHHHHHHhh
Confidence            59999999999999999999987765555433333334444555 345677899999532111     112455678899


Q ss_pred             EEEEEEeCCChhhHHHH--HHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCC-CCcEEeeeccC-
Q 006490          500 VTIFVYDSSDEYSWKRT--KELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGI-EPPIPVSMKSK-  575 (643)
Q Consensus       500 ~illv~D~s~~~s~~~~--~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~vSa~~g-  575 (643)
                      +++++++..........  ..+.............++|+++|+||+|+....   +..+.+.+.++. .++++|||++| 
T Consensus        82 ~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~---~~~~~~~~~~~~~~~v~~iSA~~g~  158 (185)
T d1lnza2          82 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA---ENLEAFKEKLTDDYPVFPISAVTRE  158 (185)
T ss_dssp             EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH---HHHHHHHHHCCSCCCBCCCSSCCSS
T ss_pred             hhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHH---HHHHHHHHHhccCCcEEEEECCCCC
Confidence            99999987754322211  111111111111111268999999999998642   334555555543 25899999999 


Q ss_pred             CHHHHHHHHHHHHhC
Q 006490          576 DLNNVFSRIIWAAEH  590 (643)
Q Consensus       576 ~i~~l~~~l~~~~~~  590 (643)
                      |+++|++.|.+.+..
T Consensus       159 Gi~~L~~~i~~~L~~  173 (185)
T d1lnza2         159 GLRELLFEVANQLEN  173 (185)
T ss_dssp             TTHHHHHHHHHHHTS
T ss_pred             CHHHHHHHHHHhhhh
Confidence            999999999998853

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.76  E-value=1.8e-18  Score=165.83  Aligned_cols=156  Identities=18%  Similarity=0.133  Sum_probs=106.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC----C--------------eeeCCcccCCceeEEEEeCCCCCcchhhh
Q 006490           15 VVVVGDRGTGKSSLIAAAATESVPEKVPPVHA----P--------------TRLPPDFYPDRVPVTIIDTSSSLENKGKL   76 (643)
Q Consensus        15 I~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~----~--------------~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~   76 (643)
                      |+|+|++|+|||||+|+|++........+...    .              +.....+..++..+.++||||+..|....
T Consensus         8 IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~~~   87 (227)
T d1g7sa4           8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLR   87 (227)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTSB
T ss_pred             EEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceecccccc
Confidence            99999999999999999987542221111000    0              00122344567789999999999988888


Q ss_pred             HHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhh------------------h
Q 006490           77 NEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLE------------------E  138 (643)
Q Consensus        77 ~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~------------------~  138 (643)
                      ..++..+|++|+|+|+...-..+.  .+.+..+...  ++|+|+|+||+|+..........                  .
T Consensus        88 ~~~~~~~D~~ilVvda~~g~~~~~--~~~~~~~~~~--~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  163 (227)
T d1g7sa4          88 KRGGALADLAILIVDINEGFKPQT--QEALNILRMY--RTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDT  163 (227)
T ss_dssp             CSSSBSCSEEEEEEETTTCCCHHH--HHHHHHHHHT--TCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHH
T ss_pred             hhcccccceEEEEEecccCcccch--hHHHHHhhcC--CCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHHHHHHH
Confidence            888999999999999877544443  3577777777  89999999999987653220000                  0


Q ss_pred             hh----hHHHHh------------hcccceEEEeCcccCCChhHHHHHHHHH
Q 006490          139 VM----GPIMQQ------------FREIETCVECSATTMIQVPDVFYYAQKA  174 (643)
Q Consensus       139 ~~----~~~~~~------------~~~~~~~~~~Sa~~~~gi~~l~~~i~~~  174 (643)
                      ..    ..+...            +....+++++||.+|.|+++|++.+...
T Consensus       164 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l  215 (227)
T d1g7sa4         164 KVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGL  215 (227)
T ss_dssp             HHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence            00    000000            1122368999999999999999987654

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.75  E-value=4.2e-18  Score=157.89  Aligned_cols=159  Identities=15%  Similarity=0.241  Sum_probs=110.2

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEE
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (643)
                      .++..||+|||++|||||||+++|++..+....++......   .+...+..+.+||+.+...........++..+++++
T Consensus        10 ~~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (186)
T d1f6ba_          10 YKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSE---ELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVF   86 (186)
T ss_dssp             TTCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCE---EEEETTEEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhCCCCcceeccccccee---EEEecccccccccccchhhhhhHHhhhhcccceeee
Confidence            35678999999999999999999999987655544222222   233456789999999999888888899999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHH-hcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHh---------------hcccce
Q 006490           89 TYACNQQSTLSRLSSYWLPELR-RLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQ---------------FREIET  152 (643)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~l~-~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~---------------~~~~~~  152 (643)
                      ++|+++..........+..... ....++|+++++||.|+......   .+ +......               .....+
T Consensus        87 ~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~~~~---~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (186)
T d1f6ba_          87 LVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISE---ER-LREMFGLYGQTTGKGSVSLKELNARPLE  162 (186)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCH---HH-HHHHHTCTTTCCCSSCCCTTTCCSCCEE
T ss_pred             eeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccccCCH---HH-HHHHHhhcccchhhhhhhHHHhhcCCCE
Confidence            9999999888887764544443 23468999999999998754221   11 1111110               000125


Q ss_pred             EEEeCcccCCChhHHHHHHHHH
Q 006490          153 CVECSATTMIQVPDVFYYAQKA  174 (643)
Q Consensus       153 ~~~~Sa~~~~gi~~l~~~i~~~  174 (643)
                      +++|||++|+||+|+|+++.+.
T Consensus       163 ~~~~SA~tg~Gi~e~~~~l~~~  184 (186)
T d1f6ba_         163 VFMCSVLKRQGYGEGFRWMAQY  184 (186)
T ss_dssp             EEECBTTTTBSHHHHHHHHHTT
T ss_pred             EEEEeCCCCCCHHHHHHHHHHh
Confidence            8999999999999999998764

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.75  E-value=2.2e-18  Score=159.91  Aligned_cols=151  Identities=22%  Similarity=0.199  Sum_probs=98.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcch---------------hhhH
Q 006490           14 RVVVVGDRGTGKSSLIAAAATESVP-EKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENK---------------GKLN   77 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---------------~~~~   77 (643)
                      .|+|+|.||||||||+|+|++.+.. ...|+   +|+....+...  .+.++||||.....               ....
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g---~T~~~~~~~~~--~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~   76 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPG---VTRKIIEIEWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIE   76 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTT---CTTSCEEEEET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCC---Eeecccccccc--cceecccCCceeccccccccccccchhhhhhhh
Confidence            6999999999999999999998743 22444   23222223333  46889999964211               1122


Q ss_pred             HhhccCCEEEEEEECCCcccHHH---------HHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhc
Q 006490           78 EELKRADAVVLTYACNQQSTLSR---------LSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR  148 (643)
Q Consensus        78 ~~~~~ad~il~v~d~~~~~s~~~---------~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~  148 (643)
                      ..++.+|++++|+|.........         ....+++.++..  ++|+++|+||+|+.....     .....+...+.
T Consensus        77 ~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~--~~p~iiv~NK~D~~~~~~-----~~~~~~~~~~~  149 (184)
T d2cxxa1          77 DNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLREL--DIPTIVAVNKLDKIKNVQ-----EVINFLAEKFE  149 (184)
T ss_dssp             HHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHT--TCCEEEEEECGGGCSCHH-----HHHHHHHHHHT
T ss_pred             hcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHHc--CCCEEEEEeeeehhhhHH-----HHHHHHHHHhc
Confidence            45678999999999764322111         112355566665  899999999999875422     22222222222


Q ss_pred             c-----cceEEEeCcccCCChhHHHHHHHHHHh
Q 006490          149 E-----IETCVECSATTMIQVPDVFYYAQKAVL  176 (643)
Q Consensus       149 ~-----~~~~~~~Sa~~~~gi~~l~~~i~~~~~  176 (643)
                      .     ...++++||++|.||++|++.+.+.+.
T Consensus       150 ~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~  182 (184)
T d2cxxa1         150 VPLSEIDKVFIPISAKFGDNIERLKNRIFEVIR  182 (184)
T ss_dssp             CCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             ccccccCCeEEEEECCCCCCHHHHHHHHHHHcc
Confidence            1     114889999999999999999987654

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.75  E-value=7.6e-18  Score=157.80  Aligned_cols=156  Identities=18%  Similarity=0.195  Sum_probs=99.1

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCC-CCCC-CCcccceEEEEEEcCCCcEEEEEEecCCc-------h---hhhh-h
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFS-ENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPE-------E---GVKK-I  488 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~-~~~~-~t~~~~~~~~~v~~~g~~~~~~i~d~~g~-------~---~~~~-~  488 (643)
                      ...+|+|+|+||||||||+|+|+|.+.. .++. ++++.+.....  .. ....  +.|+.+.       .   .... +
T Consensus        22 ~~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~--~~-~~~~--~~d~~~~~~~~~~~~~~~~~~~~~   96 (195)
T d1svia_          22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYI--IN-DELH--FVDVPGYGFAKVSKSEREAWGRMI   96 (195)
T ss_dssp             CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEE--ET-TTEE--EEECCCBCCCSSCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeeccccc--cc-ccce--EEEEEeeccccccccccchhhhHH
Confidence            3458999999999999999999987643 3332 23222222222  22 1222  2333331       1   1111 1


Q ss_pred             hccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCC---
Q 006490          489 LSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE---  565 (643)
Q Consensus       489 ~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~---  565 (643)
                      ......+..+|++++|+|++++.. .....++..+...      ++|+++|+||+|+.......+..+.+.+.++..   
T Consensus        97 ~~~~~~~~~~~~vi~viD~~~~~~-~~~~~~~~~l~~~------~~piivv~NK~D~~~~~~~~~~~~~~~~~l~~~~~~  169 (195)
T d1svia_          97 ETYITTREELKAVVQIVDLRHAPS-NDDVQMYEFLKYY------GIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPED  169 (195)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCC-HHHHHHHHHHHHT------TCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTS
T ss_pred             hhhhccccchhhhhhhhhcccccc-ccccccccccccc------cCcceechhhccccCHHHHHHHHHHHHHHhcccCCC
Confidence            123455677899999999987754 3345556666554      899999999999987655556666666665543   


Q ss_pred             CcEEeeeccC-CHHHHHHHHHHHHh
Q 006490          566 PPIPVSMKSK-DLNNVFSRIIWAAE  589 (643)
Q Consensus       566 ~~~~vSa~~g-~i~~l~~~l~~~~~  589 (643)
                      +++++||++| |+++++++|.+.+.
T Consensus       170 ~~~~~SA~~~~gi~el~~~i~~~l~  194 (195)
T d1svia_         170 ELILFSSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             EEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             CEEEEeCCCCCCHHHHHHHHHHHhC
Confidence            5899999999 99999999988763

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.75  E-value=1.5e-17  Score=154.06  Aligned_cols=158  Identities=16%  Similarity=0.149  Sum_probs=105.8

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~  500 (643)
                      ++..||+++|++|||||||+|+|.++.+...+ |+......  .+...  ......+++.+.......  .......+++
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~-~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~   83 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHV-PTLHPTSE--ELTIA--GMTFTTFDLGGHIQARRV--WKNYLPAING   83 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSCE--EEEET--TEEEEEEEECC----CCG--GGGGGGGCSE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccee-ccccccee--EEEec--ccccccccccchhhhhhH--Hhhhhcccce
Confidence            34589999999999999999999999876554 44333322  23333  345667888888777665  6788899999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCC----------------
Q 006490          501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGI----------------  564 (643)
Q Consensus       501 illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~----------------  564 (643)
                      +++++|+++...+.....+...........  +.|+++++||.|+..... ...+.+.......                
T Consensus        84 ~~~~~d~~d~~~~~~~~~~~~~~~~~~~~~--~~~~li~~~K~D~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  160 (186)
T d1f6ba_          84 IVFLVDCADHERLLESKEELDSLMTDETIA--NVPILILGNKIDRPEAIS-EERLREMFGLYGQTTGKGSVSLKELNARP  160 (186)
T ss_dssp             EEEEEETTCGGGHHHHHHHHHHHHTCGGGT--TSCEEEEEECTTSTTCCC-HHHHHHHHTCTTTCCCSSCCCTTTCCSCC
T ss_pred             eeeeeeccCccchHHHHHHHHHhhcccccC--CCceEEEEeccCccccCC-HHHHHHHHhhcccchhhhhhhHHHhhcCC
Confidence            999999999988887776665554433333  799999999999875322 2222222211100                


Q ss_pred             CCcEEeeeccC-CHHHHHHHHHHHH
Q 006490          565 EPPIPVSMKSK-DLNNVFSRIIWAA  588 (643)
Q Consensus       565 ~~~~~vSa~~g-~i~~l~~~l~~~~  588 (643)
                      .++++|||++| |++++|++|.+.+
T Consensus       161 ~~~~~~SA~tg~Gi~e~~~~l~~~i  185 (186)
T d1f6ba_         161 LEVFMCSVLKRQGYGEGFRWMAQYI  185 (186)
T ss_dssp             EEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred             CEEEEEeCCCCCCHHHHHHHHHHhh
Confidence            03789999999 9999999998753

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.73  E-value=3.3e-17  Score=151.75  Aligned_cols=150  Identities=17%  Similarity=0.201  Sum_probs=98.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCC-CcccceEEEEEEcCCCcEEEEEEecCCch-----------hhhh--hhc
Q 006490          425 RCLLFGPQNAGKSALLNSFLERPFSENYAP-TTGEQYAVNVVDQPGGNKKTLILQEIPEE-----------GVKK--ILS  490 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~~~~~~~~~-t~~~~~~~~~v~~~g~~~~~~i~d~~g~~-----------~~~~--~~~  490 (643)
                      .|+|+|+||||||||+|+|++.+......| +|...   ..+...    .+.++|++|..           .+..  ...
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T~~~---~~~~~~----~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~   74 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKI---IEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF   74 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSC---EEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCEeecc---cccccc----cceecccCCceeccccccccccccchhhhhh
Confidence            589999999999999999999876544345 44332   222222    13468998831           1111  011


Q ss_pred             cHHhhccCCEEEEEEeCCChhhHHH----------HHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHH
Q 006490          491 NKEALASCDVTIFVYDSSDEYSWKR----------TKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQ  560 (643)
Q Consensus       491 ~~~~~~~ad~illv~D~s~~~s~~~----------~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~  560 (643)
                      ....++.+|++++|+|++.+.....          ....+..+...      ++|+++|+||+|+.+...  .....+.+
T Consensus        75 ~~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~------~~p~iiv~NK~D~~~~~~--~~~~~~~~  146 (184)
T d2cxxa1          75 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLREL------DIPTIVAVNKLDKIKNVQ--EVINFLAE  146 (184)
T ss_dssp             HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHT------TCCEEEEEECGGGCSCHH--HHHHHHHH
T ss_pred             hhhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHHc------CCCEEEEEeeeehhhhHH--HHHHHHHH
Confidence            3455688999999999976432111          11233333333      899999999999876432  23334444


Q ss_pred             HhCCC------CcEEeeeccC-CHHHHHHHHHHHHh
Q 006490          561 ELGIE------PPIPVSMKSK-DLNNVFSRIIWAAE  589 (643)
Q Consensus       561 ~~~~~------~~~~vSa~~g-~i~~l~~~l~~~~~  589 (643)
                      .++..      .++++||++| |+++|++.|.+.+.
T Consensus       147 ~~~~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~  182 (184)
T d2cxxa1         147 KFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIR  182 (184)
T ss_dssp             HHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HhcccccccCCeEEEEECCCCCCHHHHHHHHHHHcc
Confidence            44432      3688999999 99999999998775

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.73  E-value=4.3e-18  Score=159.28  Aligned_cols=159  Identities=16%  Similarity=0.157  Sum_probs=114.4

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEE
Q 006490           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (643)
Q Consensus        11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~   90 (643)
                      +++||+++|+.|||||||+++|....+....     .  ....+....+.+.+|||+|++.+...+..+++.++++++|+
T Consensus         1 ~e~KivllG~~~vGKTsl~~r~~~~~~~t~~-----~--~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v~   73 (195)
T d1svsa1           1 REVKLLLLGAGESGKSTIVKQMKIIHEAGTG-----I--VETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCV   73 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHSCCCS-----E--EEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCcc-----E--EEEEEEeeeeeeeeeccccccccccchhhcccCCceeeeEE
Confidence            4689999999999999999999887653221     1  12345667889999999999999999999999999999999


Q ss_pred             ECCCcccH----------HHHHHHHHHHHHh-cCCCCcEEEEEecccCCCCC--------------ccchhhhhhhHHHH
Q 006490           91 ACNQQSTL----------SRLSSYWLPELRR-LEIKVPIIVAGCKLDLRGDH--------------NATSLEEVMGPIMQ  145 (643)
Q Consensus        91 d~~~~~s~----------~~~~~~~~~~l~~-~~~~~pvilv~NK~D~~~~~--------------~~~~~~~~~~~~~~  145 (643)
                      |+++..++          .+....|...+.. ...+.|+++++||+|+....              ......+....+..
T Consensus        74 d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (195)
T d1svsa1          74 ALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQC  153 (195)
T ss_dssp             EGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHHHH
T ss_pred             eecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHHHH
Confidence            99887654          2333346666643 34578999999999963210              00012222233333


Q ss_pred             hhccc--------ceEEEeCcccCCChhHHHHHHHHHHh
Q 006490          146 QFREI--------ETCVECSATTMIQVPDVFYYAQKAVL  176 (643)
Q Consensus       146 ~~~~~--------~~~~~~Sa~~~~gi~~l~~~i~~~~~  176 (643)
                      ++...        ..+++|||++|.||+++|+.+.+.++
T Consensus       154 ~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il  192 (195)
T d1svsa1         154 QFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVII  192 (195)
T ss_dssp             HHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHH
Confidence            33221        14678999999999999998877654

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.72  E-value=6.1e-18  Score=162.09  Aligned_cols=159  Identities=16%  Similarity=0.174  Sum_probs=103.7

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEE----------------cCCCcEEEEEEecCCchh
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVD----------------QPGGNKKTLILQEIPEEG  484 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~----------------~~g~~~~~~i~d~~g~~~  484 (643)
                      |+++ |+|+|.+|+|||||+|+|++..........++.........                ...+...+.++||+|++.
T Consensus         4 r~p~-IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~   82 (227)
T d1g7sa4           4 RSPI-VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA   82 (227)
T ss_dssp             CCCE-EEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred             CCCE-EEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceec
Confidence            3344 99999999999999999998644332222221111111111                122345677899999887


Q ss_pred             hhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-------------
Q 006490          485 VKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-------------  551 (643)
Q Consensus       485 ~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-------------  551 (643)
                      +...  +..++..||++|+|+|+.++..- .....+..+...      ++|+|+|+||+|+......             
T Consensus        83 f~~~--~~~~~~~~D~~ilVvda~~g~~~-~~~~~~~~~~~~------~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~  153 (227)
T d1g7sa4          83 FTTL--RKRGGALADLAILIVDINEGFKP-QTQEALNILRMY------RTPFVVAANKIDRIHGWRVHEGRPFMETFSKQ  153 (227)
T ss_dssp             CTTS--BCSSSBSCSEEEEEEETTTCCCH-HHHHHHHHHHHT------TCCEEEEEECGGGSTTCCCCTTCCHHHHHTTS
T ss_pred             cccc--chhcccccceEEEEEecccCccc-chhHHHHHhhcC------CCeEEEEEECccCCCchhhhhhHHHHHhhhcc
Confidence            7655  56788999999999999987653 344555555554      8999999999998753211             


Q ss_pred             --------HHHHHHHHHHh-----------------CCCCcEEeeeccC-CHHHHHHHHHHHHh
Q 006490          552 --------VQDSARVTQEL-----------------GIEPPIPVSMKSK-DLNNVFSRIIWAAE  589 (643)
Q Consensus       552 --------~~~~~~~~~~~-----------------~~~~~~~vSa~~g-~i~~l~~~l~~~~~  589 (643)
                              .....+....+                 +..+++++||++| |+++|++.|.....
T Consensus       154 ~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~  217 (227)
T d1g7sa4         154 DIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ  217 (227)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence                    00111111110                 1125799999999 99999999988764

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=6.4e-17  Score=151.81  Aligned_cols=162  Identities=15%  Similarity=0.157  Sum_probs=115.6

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEE
Q 006490           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (643)
Q Consensus        11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~   90 (643)
                      +++||+++|++|||||||+++|....+. ..| |.+...  ..+....+.+.+||++|++.+...+..+++.++++++|+
T Consensus         1 ke~Kiv~lG~~~vGKTsll~r~~~~~~~-~~p-TiG~~~--~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~   76 (200)
T d2bcjq2           1 RELKLLLLGTGESGKSTFIKQMRIIHGS-GVP-TTGIIE--YPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLV   76 (200)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHTSS-CCC-CCSCEE--EEEECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCCCCC-CCc-eeeEEE--EEEeccceeeeeccccccccccccccccccccceeeEee
Confidence            4689999999999999999999988763 233 333322  234567788999999999999999999999999999999


Q ss_pred             ECCCccc----------HHHHHHHHHHHHHhc-CCCCcEEEEEecccCCCCCcc---------------chhhhhhhHHH
Q 006490           91 ACNQQST----------LSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNA---------------TSLEEVMGPIM  144 (643)
Q Consensus        91 d~~~~~s----------~~~~~~~~~~~l~~~-~~~~pvilv~NK~D~~~~~~~---------------~~~~~~~~~~~  144 (643)
                      |.++...          +.+....|...+... ..+.|+++++||+|+......               .........+.
T Consensus        77 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  156 (200)
T d2bcjq2          77 ALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFIL  156 (200)
T ss_dssp             EGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHHHH
T ss_pred             eccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHHHH
Confidence            9877542          333334588888654 368999999999997432100               01111112222


Q ss_pred             Hhhcc-------cceEEEeCcccCCChhHHHHHHHHHHh
Q 006490          145 QQFRE-------IETCVECSATTMIQVPDVFYYAQKAVL  176 (643)
Q Consensus       145 ~~~~~-------~~~~~~~Sa~~~~gi~~l~~~i~~~~~  176 (643)
                      ..+-.       ...+++|||++|.||.++|+.+.+.++
T Consensus       157 ~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~  195 (200)
T d2bcjq2         157 KMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTIL  195 (200)
T ss_dssp             HHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHH
Confidence            22211       123689999999999999998877654

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.70  E-value=5.4e-17  Score=151.91  Aligned_cols=154  Identities=16%  Similarity=0.135  Sum_probs=97.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchh-------------hhHHhh
Q 006490           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKG-------------KLNEEL   80 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------------~~~~~~   80 (643)
                      +|+|+|+||||||||+|+|++...........+.+. ..........+.+.|++|......             .....+
T Consensus        25 ~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQ-TLNFYIINDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTR  103 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTC-------------C-CEEEEEETTTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHhcCCCceEEeecccceee-ecccccccccceEEEEEeeccccccccccchhhhHHhhhhccc
Confidence            799999999999999999998763222111111211 111111123466788877542111             111345


Q ss_pred             ccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhc--ccceEEEeCc
Q 006490           81 KRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR--EIETCVECSA  158 (643)
Q Consensus        81 ~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa  158 (643)
                      ..+|++++|+|++.+.....  ..+++.++..  ++|+++|+||+|+.....   ..+..+.+.+.+.  ...+++++||
T Consensus       104 ~~~~~vi~viD~~~~~~~~~--~~~~~~l~~~--~~piivv~NK~D~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~SA  176 (195)
T d1svia_         104 EELKAVVQIVDLRHAPSNDD--VQMYEFLKYY--GIPVIVIATKADKIPKGK---WDKHAKVVRQTLNIDPEDELILFSS  176 (195)
T ss_dssp             TTEEEEEEEEETTSCCCHHH--HHHHHHHHHT--TCCEEEEEECGGGSCGGG---HHHHHHHHHHHHTCCTTSEEEECCT
T ss_pred             cchhhhhhhhhccccccccc--cccccccccc--cCcceechhhccccCHHH---HHHHHHHHHHHhcccCCCCEEEEeC
Confidence            66799999999876654333  3578888877  899999999999865432   2233333433332  2346899999


Q ss_pred             ccCCChhHHHHHHHHHH
Q 006490          159 TTMIQVPDVFYYAQKAV  175 (643)
Q Consensus       159 ~~~~gi~~l~~~i~~~~  175 (643)
                      ++|.|++++++++.+.+
T Consensus       177 ~~~~gi~el~~~i~~~l  193 (195)
T d1svia_         177 ETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             TTCTTHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            99999999999988765

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.69  E-value=3.3e-17  Score=153.21  Aligned_cols=165  Identities=15%  Similarity=0.085  Sum_probs=106.1

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCC----CCCCCCC----------------e------eeCCcccCCceeEE
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEK----VPPVHAP----------------T------RLPPDFYPDRVPVT   62 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~----~~~~~~~----------------~------~~~~~~~~~~~~~~   62 (643)
                      .++.++|+++|+.++|||||+|+|++......    ..+....                .      ............++
T Consensus         2 ~~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (195)
T d1kk1a3           2 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS   81 (195)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred             CCCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEe
Confidence            45678999999999999999999987431110    1110000                0      00111112346699


Q ss_pred             EEeCCCCCcchhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhH
Q 006490           63 IIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGP  142 (643)
Q Consensus        63 i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~  142 (643)
                      ++||||...|.......+..+|++++|+|+.......... +.+..++..+ ..++|++.||+|+.+..........+..
T Consensus        82 ~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~-e~~~~~~~~~-~~~iiv~inK~D~~d~~~~~~~~~~~~~  159 (195)
T d1kk1a3          82 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTR-EHLMALQIIG-QKNIIIAQNKIELVDKEKALENYRQIKE  159 (195)
T ss_dssp             EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHH-HHHHHHHHHT-CCCEEEEEECGGGSCHHHHHHHHHHHHH
T ss_pred             eeccchhhhhhHHhhcccccccccccccchhhhhhhhhhH-HHHHHHHHhc-CccceeeeecccchhhHHHHHHHHHHHH
Confidence            9999999888888888899999999999988764333222 2344455442 2458889999998764221011122222


Q ss_pred             HHHhhc-ccceEEEeCcccCCChhHHHHHHHHHH
Q 006490          143 IMQQFR-EIETCVECSATTMIQVPDVFYYAQKAV  175 (643)
Q Consensus       143 ~~~~~~-~~~~~~~~Sa~~~~gi~~l~~~i~~~~  175 (643)
                      +...+. ...+++++||++|.||++|++.+.+.+
T Consensus       160 ~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~i  193 (195)
T d1kk1a3         160 FIEGTVAENAPIIPISALHGANIDVLVKAIEDFI  193 (195)
T ss_dssp             HHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HhccccCCCCeEEEEECCCCCCHHHHHHHHHHHC
Confidence            222221 123689999999999999999887754

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=3.5e-16  Score=147.76  Aligned_cols=122  Identities=17%  Similarity=0.175  Sum_probs=86.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEEE
Q 006490          425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV  504 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv  504 (643)
                      +|+|+|++|||||||+|+|+++++...+ ||.+.......+. .+....+.+||++|++.+... .+..++..+|++++|
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~-~t~~~~~~~~~~~-~~~~~~~~~~d~~g~~~~~~~-~~~~~~~~~~~~i~v   78 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYKVN-NNRGNSLTLIDLPGHESLRFQ-LLDRFKSSARAVVFV   78 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCBC-CCCSCEEEEEECS-STTCCEEEEEECCCCHHHHHH-HHHHHGGGEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCccc-CCeeEEEEEEEEe-eeeeeeeeeeeccccccccch-hhhhhhhhccccceE
Confidence            5999999999999999999998877655 5555544333332 234567888999999877542 156677999999999


Q ss_pred             EeCCChhhH-HHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcc
Q 006490          505 YDSSDEYSW-KRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT  549 (643)
Q Consensus       505 ~D~s~~~s~-~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~  549 (643)
                      +|+++..++ .....++..+.........++|++||+||+|+....
T Consensus        79 ~D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a~  124 (207)
T d2fh5b1          79 VDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAK  124 (207)
T ss_dssp             EETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCC
T ss_pred             EEcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCCC
Confidence            999997653 344445444432221111268999999999997643

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.68  E-value=1.1e-16  Score=147.60  Aligned_cols=156  Identities=15%  Similarity=0.184  Sum_probs=104.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC-CcccceEEEEEEcCCCcEEEEEEecCCchhhhh--h-----hccHHhh
Q 006490          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAP-TTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK--I-----LSNKEAL  495 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~-t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~--~-----~~~~~~~  495 (643)
                      -.|+|+|.+|||||||+|+|++.+...+..+ ++.. .....+... .......+|++|......  .     .......
T Consensus         6 ~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (179)
T d1egaa1           6 GFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTR-HRIVGIHTE-GAYQAIYVDTPGLHMEEKRAINRLMNKAASSSI   83 (179)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCS-SCEEEEEEE-TTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCceeeccCCCceE-EEEEeeeec-CCceeEeecCCCceecchhhhhhhhhhccccch
Confidence            3599999999999999999999887766654 3322 222222233 344555677777432211  0     0012233


Q ss_pred             ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeecc
Q 006490          496 ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKS  574 (643)
Q Consensus       496 ~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~  574 (643)
                      ..+|+++++.|.++...  ....+...+.+.      ..|.++|+||+|+...+.. ....+.+...++..+++++||++
T Consensus        84 ~~~~~~l~~~d~~~~~~--~~~~~~~~l~~~------~~~~i~v~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~  155 (179)
T d1egaa1          84 GDVELVIFVVEGTRWTP--DDEMVLNKLREG------KAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAET  155 (179)
T ss_dssp             CCEEEEEEEEETTCCCH--HHHHHHHHHHSS------SSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred             hhcceeEEEEecCccch--hHHHHHHHhhhc------cCceeeeeeeeeccchhhhhhhHhhhhhhhcCCCCEEEEeCcC
Confidence            57888889999876432  223333334332      6789999999998775433 55666777778877799999999


Q ss_pred             C-CHHHHHHHHHHHHh
Q 006490          575 K-DLNNVFSRIIWAAE  589 (643)
Q Consensus       575 g-~i~~l~~~l~~~~~  589 (643)
                      | |+++|++.|.+.+.
T Consensus       156 g~gi~~L~~~i~~~lp  171 (179)
T d1egaa1         156 GLNVDTIAAIVRKHLP  171 (179)
T ss_dssp             TTTHHHHHHHHHTTCC
T ss_pred             CCCHHHHHHHHHHhCC
Confidence            9 99999999988763

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=2.9e-16  Score=148.28  Aligned_cols=118  Identities=17%  Similarity=0.145  Sum_probs=86.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcch-hhhHHhhccCCEEEEEEEC
Q 006490           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENK-GKLNEELKRADAVVLTYAC   92 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-~~~~~~~~~ad~il~v~d~   92 (643)
                      +|+|+|++|||||||+|+|+++.+....++..............++.+.+||++|.+.+. ..+..+++.++++++|+|+
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~D~   81 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDS   81 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEET
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCcccCCeeEEEEEEEEeeeeeeeeeeeeccccccccchhhhhhhhhccccceEEEc
Confidence            599999999999999999999988766655333322222224567889999999988764 4566788999999999999


Q ss_pred             CCcccH-HHHHHHHHHHHHh---cCCCCcEEEEEecccCCCCC
Q 006490           93 NQQSTL-SRLSSYWLPELRR---LEIKVPIIVAGCKLDLRGDH  131 (643)
Q Consensus        93 ~~~~s~-~~~~~~~~~~l~~---~~~~~pvilv~NK~D~~~~~  131 (643)
                      ++..+. ......+...+..   ...++|+++|+||+|+....
T Consensus        82 ~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a~  124 (207)
T d2fh5b1          82 AAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAK  124 (207)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCC
T ss_pred             ccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCCC
Confidence            987653 4444334344432   23468999999999997653

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.68  E-value=5.8e-16  Score=145.75  Aligned_cols=162  Identities=19%  Similarity=0.183  Sum_probs=104.6

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC-----CcccceEEE------------------------EEEcCCCc
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAP-----TTGEQYAVN------------------------VVDQPGGN  471 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~-----t~~~~~~~~------------------------~v~~~g~~  471 (643)
                      +..++|+|+|..++|||||+++|++..-......     +........                        ..+.....
T Consensus         6 ~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (205)
T d2qn6a3           6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFL   85 (205)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEE
T ss_pred             CCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccce
Confidence            3458999999999999999999997322111110     000000000                        00011122


Q ss_pred             EEEEEEecCCchhhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCC-CcEEEEEeCCCCCCccc
Q 006490          472 KKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYG-VPCLLIASKDDLKPYTM  550 (643)
Q Consensus       472 ~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~-~pvilv~NK~Dl~~~~~  550 (643)
                      +.+.++|++|+..|-..  +...+..||++|+|+|+.++..-.+.++.+..+...      + .|+|+++||+|+.....
T Consensus        86 r~~~iiD~PGH~df~~~--~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~------~i~~iIV~vNK~Dl~~~~~  157 (205)
T d2qn6a3          86 RRISFIDAPGHEVLMAT--MLSGAALMDGAILVVAANEPFPQPQTREHFVALGII------GVKNLIIVQNKVDVVSKEE  157 (205)
T ss_dssp             EEEEEEECSCHHHHHHH--HHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT------TCCCEEEEEECGGGSCHHH
T ss_pred             EEEEEeccchHHHHHhh--hhcceeccccccccccccccccchhHHHHHHHHHHc------CCceeeeccccCCCccchH
Confidence            46778999999888665  677889999999999999874223334444444433      4 48899999999987554


Q ss_pred             cHHHHHHHHHHh---CC--CCcEEeeeccC-CHHHHHHHHHHHHhC
Q 006490          551 AVQDSARVTQEL---GI--EPPIPVSMKSK-DLNNVFSRIIWAAEH  590 (643)
Q Consensus       551 ~~~~~~~~~~~~---~~--~~~~~vSa~~g-~i~~l~~~l~~~~~~  590 (643)
                      .......+.+.+   ..  .|++++||++| |+++|++.+.+.+..
T Consensus       158 ~~~~~~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~ip~  203 (205)
T d2qn6a3         158 ALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKT  203 (205)
T ss_dssp             HHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhCCC
Confidence            433333333332   22  25899999999 999999998886653

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.67  E-value=1.5e-16  Score=149.82  Aligned_cols=168  Identities=15%  Similarity=0.081  Sum_probs=106.7

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCC---C-------CC-------------CCCCee---eC-----CcccC
Q 006490            8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEK---V-------PP-------------VHAPTR---LP-----PDFYP   56 (643)
Q Consensus         8 ~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~---~-------~~-------------~~~~~~---~~-----~~~~~   56 (643)
                      ..+++++|+|+|+.++|||||+++|++..-...   .       .+             ......   ..     .....
T Consensus         4 ~~~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (205)
T d2qn6a3           4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPK   83 (205)
T ss_dssp             CCCCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCE
T ss_pred             CCCCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeecccc
Confidence            356789999999999999999999986321000   0       00             000000   00     00011


Q ss_pred             CceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchh
Q 006490           57 DRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSL  136 (643)
Q Consensus        57 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~  136 (643)
                      ....+.++||||...|...+...+..+|++|+|+|+.+.-...... ..+..+...+ -.|+|+++||+|+.........
T Consensus        84 ~~r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~-e~~~~~~~~~-i~~iIV~vNK~Dl~~~~~~~~~  161 (205)
T d2qn6a3          84 FLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTR-EHFVALGIIG-VKNLIIVQNKVDVVSKEEALSQ  161 (205)
T ss_dssp             EEEEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHH-HHHHHHHHTT-CCCEEEEEECGGGSCHHHHHHH
T ss_pred             ceEEEEEeccchHHHHHhhhhcceeccccccccccccccccchhHH-HHHHHHHHcC-CceeeeccccCCCccchHHHHH
Confidence            2356899999999988888888899999999999987753222222 2444455542 3589999999999764322111


Q ss_pred             hhhhhHHHHhh-cccceEEEeCcccCCChhHHHHHHHHHHhC
Q 006490          137 EEVMGPIMQQF-REIETCVECSATTMIQVPDVFYYAQKAVLH  177 (643)
Q Consensus       137 ~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~~  177 (643)
                      ......+...+ ....+++++||++|.||++|++.+...+..
T Consensus       162 ~~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~ip~  203 (205)
T d2qn6a3         162 YRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKT  203 (205)
T ss_dssp             HHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             HHHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhCCC
Confidence            11222222222 112368999999999999999988876553

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.67  E-value=9.2e-16  Score=143.20  Aligned_cols=160  Identities=14%  Similarity=0.141  Sum_probs=104.8

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC---C--CcccceEEEEEEc---------------CC----CcEEEEE
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYA---P--TTGEQYAVNVVDQ---------------PG----GNKKTLI  476 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~---~--t~~~~~~~~~v~~---------------~g----~~~~~~i  476 (643)
                      +..++|+++|..++|||||+|+|++........   .  |....+.....+.               .+    ...++.+
T Consensus         3 ~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (195)
T d1kk1a3           3 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF   82 (195)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred             CCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEee
Confidence            346799999999999999999999754322211   1  1111111111110               00    1235678


Q ss_pred             EecCCchhhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCC-cEEEEEeCCCCCCccccHHHH
Q 006490          477 LQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGV-PCLLIASKDDLKPYTMAVQDS  555 (643)
Q Consensus       477 ~d~~g~~~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~-pvilv~NK~Dl~~~~~~~~~~  555 (643)
                      +|++|++.+...  +...+..+|++++|+|+.++...+...+.+..+...      ++ +++++.||+|+.+.....+..
T Consensus        83 iDtPGh~~f~~~--~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~------~~~~iiv~inK~D~~d~~~~~~~~  154 (195)
T d1kk1a3          83 IDAPGHEALMTT--MLAGASLMDGAILVIAANEPCPRPQTREHLMALQII------GQKNIIIAQNKIELVDKEKALENY  154 (195)
T ss_dssp             EECSSHHHHHHH--HHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH------TCCCEEEEEECGGGSCHHHHHHHH
T ss_pred             eccchhhhhhHH--hhcccccccccccccchhhhhhhhhhHHHHHHHHHh------cCccceeeeecccchhhHHHHHHH
Confidence            999999888765  677788999999999999874334444444444443      44 478899999998754433333


Q ss_pred             HHHHHH---hCC--CCcEEeeeccC-CHHHHHHHHHHHH
Q 006490          556 ARVTQE---LGI--EPPIPVSMKSK-DLNNVFSRIIWAA  588 (643)
Q Consensus       556 ~~~~~~---~~~--~~~~~vSa~~g-~i~~l~~~l~~~~  588 (643)
                      +.+.+.   .+.  .+++++||++| |+++|++.+.+.+
T Consensus       155 ~~~~~~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~i  193 (195)
T d1kk1a3         155 RQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFI  193 (195)
T ss_dssp             HHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHHHHHhccccCCCCeEEEEECCCCCCHHHHHHHHHHHC
Confidence            333333   332  25899999999 9999999988754

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.66  E-value=9.2e-17  Score=150.08  Aligned_cols=153  Identities=14%  Similarity=0.050  Sum_probs=105.5

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEE
Q 006490          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~il  502 (643)
                      .+||+++|..|||||||+++|...+++.     ++  .....++.  ...++.+||++|++.+..+  +..+++.+++++
T Consensus         2 e~KivllG~~~vGKTsl~~r~~~~~~~t-----~~--~~~~~~~~--~~~~~~i~D~~Gq~~~~~~--~~~~~~~~~~~i   70 (195)
T d1svsa1           2 EVKLLLLGAGESGKSTIVKQMKIIHEAG-----TG--IVETHFTF--KDLHFKMFDVGGQRSERKK--WIHCFEGVTAII   70 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHSCC-----CS--EEEEEEEE--TTEEEEEEEECCSGGGGGG--GGGGCTTCSEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCC-----cc--EEEEEEEe--eeeeeeeeccccccccccc--hhhcccCCceee
Confidence            5899999999999999999998776543     22  22223333  5678889999999999888  889999999999


Q ss_pred             EEEeCCChhhHH-----------HHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccc-----------------cHHH
Q 006490          503 FVYDSSDEYSWK-----------RTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-----------------AVQD  554 (643)
Q Consensus       503 lv~D~s~~~s~~-----------~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~-----------------~~~~  554 (643)
                      +|+|.++..++.           ....|...+... ...  +.|+++++||+|+...+.                 ..+.
T Consensus        71 ~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~-~~~--~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (195)
T d1svsa1          71 FCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK-WFT--DTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEA  147 (195)
T ss_dssp             EEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCG-GGT--TSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHH
T ss_pred             eEEeecccchHHHHhhhhHHHHHHHHHHHHHhccc-ccC--CCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHH
Confidence            999999876552           223333333222 222  789999999999732110                 0111


Q ss_pred             HHHHHHHh----CC---C--CcEEeeeccC-CHHHHHHHHHHHHh
Q 006490          555 SARVTQEL----GI---E--PPIPVSMKSK-DLNNVFSRIIWAAE  589 (643)
Q Consensus       555 ~~~~~~~~----~~---~--~~~~vSa~~g-~i~~l~~~l~~~~~  589 (643)
                      ...+....    ..   .  ++++|||++| ||+++|+.+.+.+.
T Consensus       148 ~~~~~~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il  192 (195)
T d1svsa1         148 AAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVII  192 (195)
T ss_dssp             HHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHH
Confidence            11111111    11   1  2568999999 99999999988664

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=1.5e-16  Score=149.15  Aligned_cols=156  Identities=14%  Similarity=0.086  Sum_probs=112.2

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEE
Q 006490          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~il  502 (643)
                      .+||+++|.+|||||||+++|....+.  +.||++...  ..+..  ......+||++|++.+...  +..++..+++++
T Consensus         2 e~Kiv~lG~~~vGKTsll~r~~~~~~~--~~pTiG~~~--~~~~~--~~~~~~~~d~~g~~~~~~~--~~~~~~~~~~~i   73 (200)
T d2bcjq2           2 ELKLLLLGTGESGKSTFIKQMRIIHGS--GVPTTGIIE--YPFDL--QSVIFRMVDVGGQRSERRK--WIHCFENVTSIM   73 (200)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHTSS--CCCCCSCEE--EEEEC--SSCEEEEEECCCSTTGGGG--GGGGCSSCSEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCC--CCceeeEEE--EEEec--cceeeeecccccccccccc--ccccccccceee
Confidence            589999999999999999999988763  557877543  33333  4567788999999988887  888999999999


Q ss_pred             EEEeCCChh-----------hHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-----------------HHH
Q 006490          503 FVYDSSDEY-----------SWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-----------------VQD  554 (643)
Q Consensus       503 lv~D~s~~~-----------s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-----------------~~~  554 (643)
                      +++|.++..           .++....|...+......   +.|+++++||.|+...+..                 ...
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~---~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (200)
T d2bcjq2          74 FLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQ---NSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQA  150 (200)
T ss_dssp             EEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGS---SSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHH
T ss_pred             EeeeccchhhhhhhhccccchHHHHHHHHHHHhhhhcc---CccEEEecchhhhhhhcccchHHHHhcccccCCchhHHH
Confidence            999998753           344455566655544332   7999999999998542211                 111


Q ss_pred             HHHHH-H---HhCCC-----CcEEeeeccC-CHHHHHHHHHHHHh
Q 006490          555 SARVT-Q---ELGIE-----PPIPVSMKSK-DLNNVFSRIIWAAE  589 (643)
Q Consensus       555 ~~~~~-~---~~~~~-----~~~~vSa~~g-~i~~l~~~l~~~~~  589 (643)
                      ...+. .   .....     .+++|||++| |++++|+.+.+.+.
T Consensus       151 ~~~~i~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~  195 (200)
T d2bcjq2         151 AREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTIL  195 (200)
T ss_dssp             HHHHHHHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHH
Confidence            11111 1   11111     2578999999 99999999988765

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.65  E-value=8.9e-17  Score=149.19  Aligned_cols=164  Identities=16%  Similarity=0.115  Sum_probs=110.0

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCC-------CCCC----CCC---CCCCee--eCCcccCCceeEEEEeCCCCCcch
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATES-------VPEK----VPP---VHAPTR--LPPDFYPDRVPVTIIDTSSSLENK   73 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~-------~~~~----~~~---~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~   73 (643)
                      +++++|+++|+.++|||||+++|++..       ....    ...   ..+.+.  ....+...+..++++||||..+|.
T Consensus         1 kp~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f~   80 (196)
T d1d2ea3           1 KPHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYV   80 (196)
T ss_dssp             CCEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHH
T ss_pred             CCCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHHHH
Confidence            467899999999999999999997521       0000    000   000111  223455778899999999999888


Q ss_pred             hhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccc-hhhhhhhHHHHhhcc---
Q 006490           74 GKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNAT-SLEEVMGPIMQQFRE---  149 (643)
Q Consensus        74 ~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~-~~~~~~~~~~~~~~~---  149 (643)
                      ......+..+|++|+|+|+.+....+.  .+.+..+...+ ..|+|+++||+|+..+.... .....+..+...++.   
T Consensus        81 ~~~~~~~~~aD~allVVda~~G~~~QT--~~~~~~a~~~~-~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~  157 (196)
T d1d2ea3          81 KNMITGTAPLDGCILVVAANDGPMPQT--REHLLLARQIG-VEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGE  157 (196)
T ss_dssp             HHHHHTSSCCSEEEEEEETTTCSCHHH--HHHHHHHHHTT-CCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred             HHHHHHHhhcCeEEEEEEcCCCCchhH--HHHHHHHHHhc-CCcEEEEEecccccccHHHHHHHHHHHHHHHHHhCCCcc
Confidence            888889999999999999887654433  23555666652 46899999999987542210 112233344443432   


Q ss_pred             cceEEEeCcccC----------CChhHHHHHHHHHHh
Q 006490          150 IETCVECSATTM----------IQVPDVFYYAQKAVL  176 (643)
Q Consensus       150 ~~~~~~~Sa~~~----------~gi~~l~~~i~~~~~  176 (643)
                      -.+++++||++|          .|+.+|++.+.+.++
T Consensus       158 ~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~iP  194 (196)
T d1d2ea3         158 ETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP  194 (196)
T ss_dssp             TSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred             cCEEEEEEccccccccCcccccCCHHHHHHHHHhhCC
Confidence            136899999998          588888887766543

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=1.5e-16  Score=149.30  Aligned_cols=161  Identities=17%  Similarity=0.220  Sum_probs=104.3

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEE
Q 006490           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (643)
Q Consensus        11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~   90 (643)
                      +.+||+|+|++|||||||+++|.   +...+.+|.+...  ..+......+.+||++|++.+...+..+++.++++++|+
T Consensus         1 r~iKivllG~~~vGKTsll~r~~---f~~~~~pTiG~~~--~~~~~~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~~   75 (200)
T d1zcba2           1 RLVKILLLGAGESGKSTFLKQMR---IIHGQDPTKGIHE--YDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLV   75 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHH---HHHSCCCCSSEEE--EEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHh---cCCCCCCeeeeEE--EEEeeeeeeeeeecccceeeecccccccccccceeEEEE
Confidence            35899999999999999999993   3333333344322  245667889999999999999899999999999999999


Q ss_pred             ECCCccc----------HHHHHHHHHHHHHh-cCCCCcEEEEEecccCCCCCc---------------cchhhhhhhHHH
Q 006490           91 ACNQQST----------LSRLSSYWLPELRR-LEIKVPIIVAGCKLDLRGDHN---------------ATSLEEVMGPIM  144 (643)
Q Consensus        91 d~~~~~s----------~~~~~~~~~~~l~~-~~~~~pvilv~NK~D~~~~~~---------------~~~~~~~~~~~~  144 (643)
                      |.++...          ++.....|...+.. ...++|++||+||+|+.....               ........+.+.
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~  155 (200)
T d1zcba2          76 SSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLV  155 (200)
T ss_dssp             ETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHH
T ss_pred             EcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHHHH
Confidence            9887532          33433323333332 235899999999999743100               001122333334


Q ss_pred             Hhhccc--------ceEEEeCcccCCChhHHHHHHHHHHh
Q 006490          145 QQFREI--------ETCVECSATTMIQVPDVFYYAQKAVL  176 (643)
Q Consensus       145 ~~~~~~--------~~~~~~Sa~~~~gi~~l~~~i~~~~~  176 (643)
                      ..|...        ..++++||+++.||+++|+.+.+.+.
T Consensus       156 ~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~  195 (200)
T d1zcba2         156 ECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTIL  195 (200)
T ss_dssp             HHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHH
Confidence            433221        13567999999999999998776553

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.65  E-value=2e-17  Score=160.46  Aligned_cols=227  Identities=10%  Similarity=0.040  Sum_probs=142.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC------------------CeeeCCcccCCceeEEEEeCCCCCcchhh
Q 006490           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA------------------PTRLPPDFYPDRVPVTIIDTSSSLENKGK   75 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~   75 (643)
                      +|+|+|+.++|||||+.+++...-.....+...                  .......+.+++.+++|+||||..+|...
T Consensus         8 ni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~dF~~e   87 (276)
T d2bv3a2           8 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDFTIE   87 (276)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSSSSCSTT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchhhhHHH
Confidence            499999999999999999974321111111000                  00011234467899999999999999999


Q ss_pred             hHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEE
Q 006490           76 LNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVE  155 (643)
Q Consensus        76 ~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (643)
                      ....++-+|++|+|+|+.+.-.....  +.+++.+++  ++|.|+++||+|....    .....+.++.+.++.-.-++.
T Consensus        88 ~~~~l~~~D~avlVvda~~Gv~~~T~--~~w~~a~~~--~lP~i~fINKmDr~~a----d~~~~l~ei~~~l~~~~vp~~  159 (276)
T d2bv3a2          88 VERSMRVLDGAIVVFDSSQGVEPQSE--TVWRQAEKY--KVPRIAFANKMDKTGA----DLWLVIRTMQERLGARPVVMQ  159 (276)
T ss_dssp             HHHHHHHCCEEEEEEETTTSSCHHHH--HHHHHHHTT--TCCEEEEEECTTSTTC----CHHHHHHHHHHTTCCCEEECE
T ss_pred             HHHHHHhhhheEEeccccCCcchhHH--HHHHHHHHc--CCCEEEEEeccccccc----ccchhHHHHHHHhCCCeEEEE
Confidence            99999999999999998877655554  466777777  8999999999998775    466778888888875332333


Q ss_pred             eCcccCCChhHHHHHHHHHHhCCCCC---------CCccccccchHHHHHHHHhhhhhcCCC-----CCCCCChHHHHHH
Q 006490          156 CSATTMIQVPDVFYYAQKAVLHPTAP---------LFDHDEQTLKPRCVRALKRIFIICDHD-----MDGALNDAELNEF  221 (643)
Q Consensus       156 ~Sa~~~~gi~~l~~~i~~~~~~~~~~---------~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~l~~~el~~~  221 (643)
                      +....+.++..+.+.+..........         ..........+.....++.+.+..|..     ....+..+++...
T Consensus       160 ~Pig~~~~f~GvvDl~~~~a~~~~~~~g~~~~~~~ip~~~~~~~~~~~~~l~e~vae~Dd~L~e~yle~~e~~~eel~~~  239 (276)
T d2bv3a2         160 LPIGREDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAA  239 (276)
T ss_dssp             EEESCGGGCCEEEETTTTEEEEESSSSSCCEEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHHTCCCCHHHHHHH
T ss_pred             ecccCCCceeEEeeccceEEEEecCCCCccceeccCchHHHHHHHHHHHHHhhhhhcccHHHHHHHhcCCCCCHHHHHHH
Confidence            33334444333333222222111100         000001111222222333333322221     2345666776543


Q ss_pred             hhh----------hcCCCCCHHHHHHHHHHHHhhccC
Q 006490          222 QVK----------CFNAPLQPAEIVGVKRVVQEKQHD  248 (643)
Q Consensus       222 ~~~----------~~~~~~~~~~~~~~~~~~~~~~~~  248 (643)
                      ...          +|++++...|++.+++.+.+++|+
T Consensus       240 l~~a~~~g~i~PV~~GSA~~n~GV~~LLD~i~~~~PS  276 (276)
T d2bv3a2         240 IRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPS  276 (276)
T ss_dssp             HHHHHHTTSCEEEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             HHHHHhcCcEEEEEEeECCCCcCHHHHHHHHHHhCCC
Confidence            333          689999999999999999999885

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.65  E-value=3.4e-16  Score=145.18  Aligned_cols=157  Identities=15%  Similarity=0.045  Sum_probs=107.3

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCC-----CCC-----------CCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhh
Q 006490          423 VFRCLLFGPQNAGKSALLNSFLERP-----FSE-----------NYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK  486 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~~~~-----~~~-----------~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~  486 (643)
                      .++|+++|..++|||||+++|++.-     ...           ......+.+.....+..  ..+.+.++|++|+..|.
T Consensus         3 ~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~--~~~~~~~iDtPGh~~f~   80 (196)
T d1d2ea3           3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYST--AARHYAHTDCPGHADYV   80 (196)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEEC--SSCEEEEEECSSHHHHH
T ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEe--ceeeEEeecCcchHHHH
Confidence            4799999999999999999998520     000           00001111222233333  44667789999998876


Q ss_pred             hhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc----HHHHHHHHHHh
Q 006490          487 KILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA----VQDSARVTQEL  562 (643)
Q Consensus       487 ~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~----~~~~~~~~~~~  562 (643)
                      ..  +...+..||++++|+|+.++.. .+..+.+..+....     ..|+|+++||+|+..+...    ..+++.+...+
T Consensus        81 ~~--~~~~~~~aD~allVVda~~G~~-~QT~~~~~~a~~~~-----~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~  152 (196)
T d1d2ea3          81 KN--MITGTAPLDGCILVVAANDGPM-PQTREHLLLARQIG-----VEHVVVYVNKADAVQDSEMVELVELEIRELLTEF  152 (196)
T ss_dssp             HH--HHHTSSCCSEEEEEEETTTCSC-HHHHHHHHHHHHTT-----CCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHT
T ss_pred             HH--HHHHHhhcCeEEEEEEcCCCCc-hhHHHHHHHHHHhc-----CCcEEEEEecccccccHHHHHHHHHHHHHHHHHh
Confidence            65  6788899999999999999865 34455455544441     4579999999999864333    33555666666


Q ss_pred             CC----CCcEEeeeccC-----------CHHHHHHHHHHHHh
Q 006490          563 GI----EPPIPVSMKSK-----------DLNNVFSRIIWAAE  589 (643)
Q Consensus       563 ~~----~~~~~vSa~~g-----------~i~~l~~~l~~~~~  589 (643)
                      ++    .|++++||++|           ++.+|++.+.+.+.
T Consensus       153 ~~~~~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~iP  194 (196)
T d1d2ea3         153 GYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP  194 (196)
T ss_dssp             TSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred             CCCcccCEEEEEEccccccccCcccccCCHHHHHHHHHhhCC
Confidence            76    36899999986           67888888766543

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=3.4e-16  Score=146.85  Aligned_cols=156  Identities=17%  Similarity=0.154  Sum_probs=103.7

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEE
Q 006490          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~il  502 (643)
                      .+||+++|.+|||||||+++|.   +...+.||++.  ....++.  ....+.+||++|++.+...  +..+++.+++++
T Consensus         2 ~iKivllG~~~vGKTsll~r~~---f~~~~~pTiG~--~~~~~~~--~~~~~~~~D~~gq~~~~~~--~~~~~~~~~~~~   72 (200)
T d1zcba2           2 LVKILLLGAGESGKSTFLKQMR---IIHGQDPTKGI--HEYDFEI--KNVPFKMVDVGGQRSERKR--WFECFDSVTSIL   72 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH---HHHSCCCCSSE--EEEEEEE--TTEEEEEEEECC---------CTTSCTTCCEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHh---cCCCCCCeeee--EEEEEee--eeeeeeeecccceeeeccc--ccccccccceeE
Confidence            5899999999999999999993   44556677763  3334444  4577889999999888777  788999999999


Q ss_pred             EEEeCCChhh----------HHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccc-----------------cHHHH
Q 006490          503 FVYDSSDEYS----------WKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-----------------AVQDS  555 (643)
Q Consensus       503 lv~D~s~~~s----------~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~-----------------~~~~~  555 (643)
                      +++|.++..+          ++....++..+.......  +.|+++++||+|+.+...                 ..+.+
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~  150 (200)
T d1zcba2          73 FLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFS--NVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDV  150 (200)
T ss_dssp             EEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGT--TSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHH
T ss_pred             EEEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhc--CceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHH
Confidence            9999997533          344455555554433333  899999999999854211                 01122


Q ss_pred             HHH-HHHh---CC------CCcEEeeeccC-CHHHHHHHHHHHHh
Q 006490          556 ARV-TQEL---GI------EPPIPVSMKSK-DLNNVFSRIIWAAE  589 (643)
Q Consensus       556 ~~~-~~~~---~~------~~~~~vSa~~g-~i~~l~~~l~~~~~  589 (643)
                      .++ ...+   ..      ..+++|||+++ ||+++|+.+.+.+.
T Consensus       151 ~~~~~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~  195 (200)
T d1zcba2         151 QKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTIL  195 (200)
T ss_dssp             HHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHH
Confidence            222 2211   10      01457999999 99999999887654

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.63  E-value=7e-16  Score=141.96  Aligned_cols=155  Identities=17%  Similarity=0.163  Sum_probs=103.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhh---------HHhhccC
Q 006490           14 RVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKL---------NEELKRA   83 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~---------~~~~~~a   83 (643)
                      .|+|+|.+|||||||+|+|++.+.... .++......+..........+..+|++|........         ......+
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDV   86 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCCceeEeecCCCceecchhhhhhhhhhccccchhhc
Confidence            489999999999999999998874322 222222222333444556677889999875322111         1234567


Q ss_pred             CEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCC
Q 006490           84 DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQ  163 (643)
Q Consensus        84 d~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  163 (643)
                      ++++++.|.........   .+...+.+.  ..|+++|+||+|.......  .....+.+..+++. .+++++||++|.|
T Consensus        87 ~~~l~~~d~~~~~~~~~---~~~~~l~~~--~~~~i~v~~k~d~~~~~~~--~~~~~~~~~~~~~~-~~~~~vSA~~g~g  158 (179)
T d1egaa1          87 ELVIFVVEGTRWTPDDE---MVLNKLREG--KAPVILAVNKVDNVQEKAD--LLPHLQFLASQMNF-LDIVPISAETGLN  158 (179)
T ss_dssp             EEEEEEEETTCCCHHHH---HHHHHHHSS--SSCEEEEEESTTTCCCHHH--HHHHHHHHHTTSCC-SEEEECCTTTTTT
T ss_pred             ceeEEEEecCccchhHH---HHHHHhhhc--cCceeeeeeeeeccchhhh--hhhHhhhhhhhcCC-CCEEEEeCcCCCC
Confidence            88888888665433222   244445544  6889999999998765432  33445566666654 4799999999999


Q ss_pred             hhHHHHHHHHHHh
Q 006490          164 VPDVFYYAQKAVL  176 (643)
Q Consensus       164 i~~l~~~i~~~~~  176 (643)
                      +++|++.+.+.+.
T Consensus       159 i~~L~~~i~~~lp  171 (179)
T d1egaa1         159 VDTIAAIVRKHLP  171 (179)
T ss_dssp             HHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHhCC
Confidence            9999999887653

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.61  E-value=8.9e-16  Score=143.72  Aligned_cols=145  Identities=17%  Similarity=0.173  Sum_probs=98.1

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCC------------------CCCCCeeeCCcccCCceeEEEEeCCCCCc
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVP------------------PVHAPTRLPPDFYPDRVPVTIIDTSSSLE   71 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~   71 (643)
                      +++++|+++|++++|||||+++|+...-.....                  +.+ .......+..++..++|+||||+.+
T Consensus         1 k~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiT-i~~~~~~~~~~~~~i~iiDtPGh~d   79 (204)
T d2c78a3           1 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGIT-INTAHVEYETAKRHYSHVDCPGHAD   79 (204)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCC-CSCEEEEEECSSCEEEEEECCCSGG
T ss_pred             CCCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeE-EEeeEEEEEeCCeEEEEEeCCCchh
Confidence            367899999999999999999997421000000                  110 0112234557788999999999999


Q ss_pred             chhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCc-EEEEEecccCCCCCccchhhhhhhHHHHhh---
Q 006490           72 NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVP-IIVAGCKLDLRGDHNATSLEEVMGPIMQQF---  147 (643)
Q Consensus        72 ~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p-vilv~NK~D~~~~~~~~~~~~~~~~~~~~~---  147 (643)
                      |...+...+..||++|+|+|+......+..  +.+..+...  ++| +|+++||+|+.+...  ..++...++...+   
T Consensus        80 f~~~~~~~~~~aD~avlVvda~~Gv~~qt~--~~~~~~~~~--gi~~iiv~iNK~D~~~~~~--~~~~~~~~i~~~l~~~  153 (204)
T d2c78a3          80 YIKNMITGAAQMDGAILVVSAADGPMPQTR--EHILLARQV--GVPYIVVFMNKVDMVDDPE--LLDLVEMEVRDLLNQY  153 (204)
T ss_dssp             GHHHHHHHHTTCSSEEEEEETTTCCCHHHH--HHHHHHHHT--TCCCEEEEEECGGGCCCHH--HHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEEecccCCCHH--HHHHHHHHHHHHHHhc
Confidence            998888999999999999999877666543  466677766  665 778899999865322  1223223333322   


Q ss_pred             c---ccceEEEeCcccC
Q 006490          148 R---EIETCVECSATTM  161 (643)
Q Consensus       148 ~---~~~~~~~~Sa~~~  161 (643)
                      +   ...++++.||..+
T Consensus       154 ~~~~~~i~~i~~sa~~~  170 (204)
T d2c78a3         154 EFPGDEVPVIRGSALLA  170 (204)
T ss_dssp             TSCTTTSCEEECCHHHH
T ss_pred             CCCcccceeeeeechhh
Confidence            2   1135788887644

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.59  E-value=9.9e-16  Score=148.23  Aligned_cols=225  Identities=13%  Similarity=0.096  Sum_probs=138.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCC------CCe---------e---eCCcccCCceeEEEEeCCCCCcchhh
Q 006490           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVH------APT---------R---LPPDFYPDRVPVTIIDTSSSLENKGK   75 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~------~~~---------~---~~~~~~~~~~~~~i~Dt~G~~~~~~~   75 (643)
                      +|+|+|+.++|||||+.+|+...-.....+..      ..+         +   ....+.+++.+++++||||..+|...
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~dF~~e   83 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVGE   83 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccccceeEEccCchhhhhhh
Confidence            49999999999999999997433211111100      000         0   11234467889999999999999999


Q ss_pred             hHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEE
Q 006490           76 LNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVE  155 (643)
Q Consensus        76 ~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (643)
                      ...+++-+|++|+|+|+.........  +.++.+++.  ++|.++++||+|...     ...+.+..+.+.++.. .++.
T Consensus        84 ~~~al~~~D~avlvvda~~Gv~~~t~--~~~~~~~~~--~~p~~i~iNk~D~~~-----~~~~~l~~~~~~lg~~-vp~~  153 (267)
T d2dy1a2          84 IRGALEAADAALVAVSAEAGVQVGTE--RAWTVAERL--GLPRMVVVTKLDKGG-----DYYALLEDLRSTLGPI-LPID  153 (267)
T ss_dssp             HHHHHHHCSEEEEEEETTTCSCHHHH--HHHHHHHHT--TCCEEEEEECGGGCC-----CHHHHHHHHHHHHCSE-EECE
T ss_pred             hhhhhcccCceEEEeeccCCccchhH--HHHHhhhhc--ccccccccccccccc-----cchhhhhhHHHHhccC-cCeE
Confidence            99999999999999998877665554  466677777  899999999999643     2445667777777742 2334


Q ss_pred             eCcccCCChhHHHHHHHHHHhCCC------CCCCccccccchHHHHHHHHhhhhhcCCC-----CCCCCChHHHHHHhhh
Q 006490          156 CSATTMIQVPDVFYYAQKAVLHPT------APLFDHDEQTLKPRCVRALKRIFIICDHD-----MDGALNDAELNEFQVK  224 (643)
Q Consensus       156 ~Sa~~~~gi~~l~~~i~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~l~~~el~~~~~~  224 (643)
                      +....|.+...+.+.+...+....      .+..............+.++.+....+..     ....+..+++......
T Consensus       154 ~Pi~~~~~f~GvvDl~~~~a~~~~~~~~~~~~ip~~~~~~~~~~r~~L~E~vae~Dd~Lle~yle~~~l~~eel~~~l~~  233 (267)
T d2dy1a2         154 LPLYEGGKWVGLIDVFHGKAYRYENGEEREAEVPPEERERVQRFRQEVLEAIVETDEGLLEKYLEGEEVTGEALEKAFHE  233 (267)
T ss_dssp             EEEEETTEEEEEEETTTTEEEEEETTEEEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred             eeeccCCceeEEeecCcceEEEecCCCCceeeCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCcccHHHHHHHHHH
Confidence            444444443333332222211100      01111111111122223333333222211     2345667776544333


Q ss_pred             ----------hcCCCCCHHHHHHHHHHHHhhccC
Q 006490          225 ----------CFNAPLQPAEIVGVKRVVQEKQHD  248 (643)
Q Consensus       225 ----------~~~~~~~~~~~~~~~~~~~~~~~~  248 (643)
                                +|++++...|+..+++.+.+++|+
T Consensus       234 ai~~g~i~PV~~GSA~~n~GV~~LLd~i~~~~Ps  267 (267)
T d2dy1a2         234 AVRRGLLYPVALASGEREIGVLPLLELILEALPS  267 (267)
T ss_dssp             HHHTTSCEEEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             HHHcCcEEEEEeCcCCCCcCHHHHHHHHHHhCCC
Confidence                      688999999999999999999885

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.57  E-value=6.5e-15  Score=136.24  Aligned_cols=159  Identities=13%  Similarity=0.064  Sum_probs=89.1

Q ss_pred             cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC--CcccceEEEEEEcCCCcEEEEEEecCCc--------hhhhhh-
Q 006490          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAP--TTGEQYAVNVVDQPGGNKKTLILQEIPE--------EGVKKI-  488 (643)
Q Consensus       420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~--t~~~~~~~~~v~~~g~~~~~~i~d~~g~--------~~~~~~-  488 (643)
                      ..+.++|+|+|+||||||||+|+|++.+.......  ++......... .. +.... ..+..+.        ...... 
T Consensus        13 ~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~   89 (188)
T d1puia_          13 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEV-AD-GKRLV-DLPGYGYAEVPEEMKRKWQRAL   89 (188)
T ss_dssp             CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEE-ET-TEEEE-ECCCCC------CCHHHHHHHH
T ss_pred             CccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceec-cc-cccee-eeecccccchhhhhhhhhhhhh
Confidence            45679999999999999999999999876655442  33322222211 11 22222 1222211        011111 


Q ss_pred             hccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHh----CC
Q 006490          489 LSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQEL----GI  564 (643)
Q Consensus       489 ~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~----~~  564 (643)
                      ..........+.++.+.|...+.. .....++..+...      ..++++++||+|+..........+.+.+.+    +.
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~------~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~  162 (188)
T d1puia_          90 GEYLEKRQSLQGLVVLMDIRHPLK-DLDQQMIEWAVDS------NIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGD  162 (188)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCC-HHHHHHHHHHHHT------TCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSC
T ss_pred             hhhhhhhhheeEEEEeecccccch-hHHHHHHHHhhhc------cccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCC
Confidence            001222234556666667766544 3334455555444      789999999999987654444444444443    23


Q ss_pred             CCcEEeeeccC-CHHHHHHHHHHHH
Q 006490          565 EPPIPVSMKSK-DLNNVFSRIIWAA  588 (643)
Q Consensus       565 ~~~~~vSa~~g-~i~~l~~~l~~~~  588 (643)
                      .++++|||++| |+++|++.|.+.+
T Consensus       163 ~~~i~vSA~~g~Gid~L~~~i~~~~  187 (188)
T d1puia_         163 VQVETFSSLKKQGVDKLRQKLDTWF  187 (188)
T ss_dssp             EEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             CcEEEEeCCCCCCHHHHHHHHHHHh
Confidence            36899999999 9999999987643

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.56  E-value=7.8e-15  Score=137.22  Aligned_cols=143  Identities=15%  Similarity=0.083  Sum_probs=96.5

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCC---CCC--CCC-------C-----CcccceEEEEEEcCCCcEEEEEEecCCchh
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERP---FSE--NYA-------P-----TTGEQYAVNVVDQPGGNKKTLILQEIPEEG  484 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~---~~~--~~~-------~-----t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~  484 (643)
                      ..++|+++|.+++|||||+++|+...   ...  ...       +     .++.+.....+.+.  ..++.++||+|+..
T Consensus         2 ~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~--~~~i~iiDtPGh~d   79 (204)
T d2c78a3           2 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETA--KRHYSHVDCPGHAD   79 (204)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECS--SCEEEEEECCCSGG
T ss_pred             CCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeC--CeEEEEEeCCCchh
Confidence            35899999999999999999997320   000  000       0     11222333444444  45777899999988


Q ss_pred             hhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCc-EEEEEeCCCCCCcccc----HHHHHHHH
Q 006490          485 VKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVP-CLLIASKDDLKPYTMA----VQDSARVT  559 (643)
Q Consensus       485 ~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~p-vilv~NK~Dl~~~~~~----~~~~~~~~  559 (643)
                      +-.-  +...+..||++|+|+|+.++...+ ..+.+..+...      ++| +|+++||+|+.+....    .+.++.+.
T Consensus        80 f~~~--~~~~~~~aD~avlVvda~~Gv~~q-t~~~~~~~~~~------gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l  150 (204)
T d2c78a3          80 YIKN--MITGAAQMDGAILVVSAADGPMPQ-TREHILLARQV------GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLL  150 (204)
T ss_dssp             GHHH--HHHHHTTCSSEEEEEETTTCCCHH-HHHHHHHHHHT------TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHH
T ss_pred             hHHH--HHHHHHHCCEEEEEEECCCCCcHH-HHHHHHHHHHc------CCCeEEEEEEecccCCCHHHHHHHHHHHHHHH
Confidence            7664  678899999999999999987744 34444444444      766 7788999999764332    34555555


Q ss_pred             HHhCCC----CcEEeeeccC
Q 006490          560 QELGIE----PPIPVSMKSK  575 (643)
Q Consensus       560 ~~~~~~----~~~~vSa~~g  575 (643)
                      ..++++    +++++||..+
T Consensus       151 ~~~~~~~~~i~~i~~sa~~~  170 (204)
T d2c78a3         151 NQYEFPGDEVPVIRGSALLA  170 (204)
T ss_dssp             HHTTSCTTTSCEEECCHHHH
T ss_pred             HhcCCCcccceeeeeechhh
Confidence            666653    5688888654

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.56  E-value=6.1e-15  Score=136.44  Aligned_cols=162  Identities=13%  Similarity=0.052  Sum_probs=88.0

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-eCCcccCCceeEEEEeCCCCCc-chh-------hhH--
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLE-NKG-------KLN--   77 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~-~~~-------~~~--   77 (643)
                      .....+|+|+|+||||||||+|+|++.+..........+.. ........+......++++... ...       ...  
T Consensus        13 ~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (188)
T d1puia_          13 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGEY   92 (188)
T ss_dssp             CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHHHHH
T ss_pred             CccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccccceeeeecccccchhhhhhhhhhhhhhhh
Confidence            34568999999999999999999999875333221111111 1111222233333333333211 100       111  


Q ss_pred             -HhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEe
Q 006490           78 -EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVEC  156 (643)
Q Consensus        78 -~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (643)
                       ......+.++.+.+..........  .+...+...  ..++++++||+|+..........+.+.+....++...+++++
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v  168 (188)
T d1puia_          93 LEKRQSLQGLVVLMDIRHPLKDLDQ--QMIEWAVDS--NIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETF  168 (188)
T ss_dssp             HHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHHT--TCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEEC
T ss_pred             hhhhhheeEEEEeecccccchhHHH--HHHHHhhhc--cccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCCCcEEEE
Confidence             122334556666665555444433  366666665  789999999999876432211122223333333433478999


Q ss_pred             CcccCCChhHHHHHHHHH
Q 006490          157 SATTMIQVPDVFYYAQKA  174 (643)
Q Consensus       157 Sa~~~~gi~~l~~~i~~~  174 (643)
                      ||++|.||++|++.|.+.
T Consensus       169 SA~~g~Gid~L~~~i~~~  186 (188)
T d1puia_         169 SSLKKQGVDKLRQKLDTW  186 (188)
T ss_dssp             BTTTTBSHHHHHHHHHHH
T ss_pred             eCCCCCCHHHHHHHHHHH
Confidence            999999999999987653

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.54  E-value=3.5e-15  Score=142.02  Aligned_cols=113  Identities=16%  Similarity=0.205  Sum_probs=86.4

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEE
Q 006490           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (643)
Q Consensus        11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~   90 (643)
                      ..+||+|+|++|||||||+++|....+.   | +.+....  .+..+++.+.+||++|++.+...+..++++++++++|+
T Consensus         5 ~~~KilllG~~~vGKTsll~~~~~~~~~---p-TiG~~~~--~~~~~~~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~v~   78 (221)
T d1azta2           5 ATHRLLLLGAGESGKSTIVKQMRILHVV---L-TSGIFET--KFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVV   78 (221)
T ss_dssp             HSEEEEEECSTTSSHHHHHHHHHHHHCC---C-CCSCEEE--EEEETTEEEEEEECCCSTTTTTGGGGGCTTCSEEEEEE
T ss_pred             hcCEEEEECCCCCCHHHHHHHHhcCCcC---C-CCCeEEE--EEEECcEEEEEEecCccceeccchhhhcccccceEEEE
Confidence            4689999999999999999999876553   2 2332222  34557899999999999999999999999999999999


Q ss_pred             ECCCc----------ccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCCC
Q 006490           91 ACNQQ----------STLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRG  129 (643)
Q Consensus        91 d~~~~----------~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~D~~~  129 (643)
                      |.++.          ....+....|...+... ..++|++|++||+|+..
T Consensus        79 d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~  128 (221)
T d1azta2          79 ASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLA  128 (221)
T ss_dssp             ETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHH
T ss_pred             EccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhh
Confidence            98754          23344443455555432 35899999999999754

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.53  E-value=6.6e-14  Score=132.14  Aligned_cols=154  Identities=18%  Similarity=0.125  Sum_probs=102.0

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHhcCC--CCCC----------CCCCCCC---------------------eeeCCcc
Q 006490            8 SSRTGVRVVVVGDRGTGKSSLIAAAATES--VPEK----------VPPVHAP---------------------TRLPPDF   54 (643)
Q Consensus         8 ~~~~~~kI~lvG~~~vGKSsL~n~l~~~~--~~~~----------~~~~~~~---------------------~~~~~~~   54 (643)
                      ..++.+||+++|+.++|||||+++|+...  +...          ..+....                     ......+
T Consensus         5 ~~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~   84 (222)
T d1zunb3           5 ERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYF   84 (222)
T ss_dssp             TSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEE
T ss_pred             ccCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEE
Confidence            45677899999999999999999997432  1100          0000000                     0001122


Q ss_pred             cCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCc-EEEEEecccCCCCCcc
Q 006490           55 YPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVP-IIVAGCKLDLRGDHNA  133 (643)
Q Consensus        55 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p-vilv~NK~D~~~~~~~  133 (643)
                      ...+..+.++||||...|.......+..+|++|+|+|+......+..  +.+..+...  ++| +|++.||+|+......
T Consensus        85 ~~~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~--e~~~~~~~~--gv~~iiv~vNK~D~~~~~~~  160 (222)
T d1zunb3          85 STAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTR--RHSYIASLL--GIKHIVVAINKMDLNGFDER  160 (222)
T ss_dssp             ECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHH--HHHHHHHHT--TCCEEEEEEECTTTTTSCHH
T ss_pred             eccceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccchH--HHHHHHHHc--CCCEEEEEEEccccccccce
Confidence            24567899999999999998888999999999999998876554433  345555555  554 8889999999875433


Q ss_pred             chhhhh---hhHHHHhhccc---ceEEEeCcccCCChhH
Q 006490          134 TSLEEV---MGPIMQQFREI---ETCVECSATTMIQVPD  166 (643)
Q Consensus       134 ~~~~~~---~~~~~~~~~~~---~~~~~~Sa~~~~gi~~  166 (643)
                       ...+.   +..+.++++..   .+++++||.+|.||.+
T Consensus       161 -~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~~  198 (222)
T d1zunb3         161 -VFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVN  198 (222)
T ss_dssp             -HHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred             -ehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCCc
Confidence             23332   23334443211   2579999999999954

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.50  E-value=9.4e-14  Score=131.06  Aligned_cols=149  Identities=19%  Similarity=0.249  Sum_probs=99.0

Q ss_pred             cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCC----------C--CCc---------------------ccceEEEEEE
Q 006490          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENY----------A--PTT---------------------GEQYAVNVVD  466 (643)
Q Consensus       420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~----------~--~t~---------------------~~~~~~~~v~  466 (643)
                      .+..++|+++|..++|||||+++|+...-....          .  .++                     +.........
T Consensus         6 ~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~   85 (222)
T d1zunb3           6 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS   85 (222)
T ss_dssp             SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred             cCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEEe
Confidence            346789999999999999999999742211100          0  011                     1112222333


Q ss_pred             cCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCc-EEEEEeCCCC
Q 006490          467 QPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVP-CLLIASKDDL  545 (643)
Q Consensus       467 ~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~p-vilv~NK~Dl  545 (643)
                      .  ..+.+.++|++|++.+-.-  ....+..+|++++|+|+.++..-+ ..+.+..+...      +++ +|++.||+|+
T Consensus        86 ~--~~~~~~iiD~PGH~dfv~~--~~~g~~~aD~ailVvda~~G~~~Q-t~e~~~~~~~~------gv~~iiv~vNK~D~  154 (222)
T d1zunb3          86 T--AKRKFIIADTPGHEQYTRN--MATGASTCDLAIILVDARYGVQTQ-TRRHSYIASLL------GIKHIVVAINKMDL  154 (222)
T ss_dssp             C--SSEEEEEEECCCSGGGHHH--HHHHHTTCSEEEEEEETTTCSCHH-HHHHHHHHHHT------TCCEEEEEEECTTT
T ss_pred             c--cceEEEEEeccchhhhhhh--hccccccCceEEEEeccccCcccc-hHHHHHHHHHc------CCCEEEEEEEcccc
Confidence            3  3466788999999887654  677889999999999999886533 34444444433      655 8899999999


Q ss_pred             CCcccc-----HHHHHHHHHHhCCC----CcEEeeeccC-CHHH
Q 006490          546 KPYTMA-----VQDSARVTQELGIE----PPIPVSMKSK-DLNN  579 (643)
Q Consensus       546 ~~~~~~-----~~~~~~~~~~~~~~----~~~~vSa~~g-~i~~  579 (643)
                      .+..+.     ..++..+.+..++.    +++++||++| |+.+
T Consensus       155 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~~  198 (222)
T d1zunb3         155 NGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVN  198 (222)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred             ccccceehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCCc
Confidence            863322     33445566666664    4689999999 9843

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.48  E-value=6.7e-14  Score=131.83  Aligned_cols=114  Identities=19%  Similarity=0.232  Sum_probs=80.2

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhH----HhhccCCEEEE
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLN----EELKRADAVVL   88 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~----~~~~~ad~il~   88 (643)
                      .+|+|+|+||||||||+|+|++..+.+.    .+.......+..++..+.+|||||.......+.    ..+..++.+++
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~~~~~~~----tt~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~~i~   79 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTTDSVRPT----VVSQEPLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIF   79 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSSCCCB----CCCSSCEEETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCe----EEecceEEEEEeCCeEEEEEecccccchhhHHHHHHHHHhhhccccce
Confidence            4799999999999999999999876432    112222334556678899999999887655444    34556689999


Q ss_pred             EEECCC-cccHHHHHHHHHH----HHHh-cCCCCcEEEEEecccCCCCC
Q 006490           89 TYACNQ-QSTLSRLSSYWLP----ELRR-LEIKVPIIVAGCKLDLRGDH  131 (643)
Q Consensus        89 v~d~~~-~~s~~~~~~~~~~----~l~~-~~~~~pvilv~NK~D~~~~~  131 (643)
                      ++|..+ ..+++.... |+.    .++. ...++|+++|+||+|+....
T Consensus        80 ~vd~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~~  127 (209)
T d1nrjb_          80 MVDSTVDPKKLTTTAE-FLVDILSITESSCENGIDILIACNKSELFTAR  127 (209)
T ss_dssp             EEETTSCTTCCHHHHH-HHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred             EEEEecccccHHHHHH-HHHHHHHHHHHHHhccCCeEEEEEeecccccC
Confidence            999764 455565553 332    2222 23589999999999987653

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.45  E-value=8.6e-14  Score=132.20  Aligned_cols=115  Identities=17%  Similarity=0.155  Sum_probs=85.2

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i  501 (643)
                      ..+||+++|.+|||||||++++...++    .||++  +....++..  ...+.+||++|++.+...  +..++.+++++
T Consensus         5 ~~~KilllG~~~vGKTsll~~~~~~~~----~pTiG--~~~~~~~~~--~~~~~~~D~~Gq~~~r~~--w~~~~~~~~~i   74 (221)
T d1azta2           5 ATHRLLLLGAGESGKSTIVKQMRILHV----VLTSG--IFETKFQVD--KVNFHMFDVGGQRDERRK--WIQCFNDVTAI   74 (221)
T ss_dssp             HSEEEEEECSTTSSHHHHHHHHHHHHC----CCCCS--CEEEEEEET--TEEEEEEECCCSTTTTTG--GGGGCTTCSEE
T ss_pred             hcCEEEEECCCCCCHHHHHHHHhcCCc----CCCCC--eEEEEEEEC--cEEEEEEecCccceeccc--hhhhcccccce
Confidence            458999999999999999999976543    25665  344445554  467889999999888777  88899999999


Q ss_pred             EEEEeCCChh----------hHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCc
Q 006490          502 IFVYDSSDEY----------SWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPY  548 (643)
Q Consensus       502 llv~D~s~~~----------s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~  548 (643)
                      ++|+|.++..          ...+...++..+.......  ++|++|++||+|+.+.
T Consensus        75 i~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~--~~~iil~~NK~Dl~~~  129 (221)
T d1azta2          75 IFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLR--TISVILFLNKQDLLAE  129 (221)
T ss_dssp             EEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGS--SCEEEEEEECHHHHHH
T ss_pred             EEEEEccccccccccccchHHHHHHHHHHHHHhcChhhC--CCcEEEEechhhhhhh
Confidence            9999998532          2333344444444433223  7999999999998653

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.41  E-value=6.6e-13  Score=124.87  Aligned_cols=118  Identities=22%  Similarity=0.261  Sum_probs=79.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhh--ccHHhhccCCEE
Q 006490          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKIL--SNKEALASCDVT  501 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~--~~~~~~~~ad~i  501 (643)
                      .+|+|+|+||||||||+|+|+++++.    ++++.......++.  ....+.+||++|++......  ........++.+
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~~~~~----~~tt~~~~~~~~~~--~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~~   77 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTTDSVR----PTVVSQEPLSAADY--DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGL   77 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSSCC----CBCCCSSCEEETTG--GGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCC----CeEEecceEEEEEe--CCeEEEEEecccccchhhHHHHHHHHHhhhcccc
Confidence            48999999999999999999998754    33333333333333  34456679999987654431  133445677999


Q ss_pred             EEEEeCCC-hhhHHHHHHHHHHHH---HhcCCCCCCCcEEEEEeCCCCCCcc
Q 006490          502 IFVYDSSD-EYSWKRTKELLVEVA---RLGEDSGYGVPCLLIASKDDLKPYT  549 (643)
Q Consensus       502 llv~D~s~-~~s~~~~~~~~~~i~---~~~~~~~~~~pvilv~NK~Dl~~~~  549 (643)
                      ++++|+.+ ..++.....|+..+.   ......  ++|+++|+||+|+....
T Consensus        78 i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~piiiv~NK~D~~~~~  127 (209)
T d1nrjb_          78 IFMVDSTVDPKKLTTTAEFLVDILSITESSCEN--GIDILIACNKSELFTAR  127 (209)
T ss_dssp             EEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTT--CCCEEEEEECTTSTTCC
T ss_pred             ceEEEEecccccHHHHHHHHHHHHHHHHHHHhc--cCCeEEEEEeecccccC
Confidence            99999875 455566655554332   122222  89999999999997643

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=99.40  E-value=1e-12  Score=128.59  Aligned_cols=87  Identities=14%  Similarity=0.039  Sum_probs=60.2

Q ss_pred             hhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcc-cce
Q 006490           74 GKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE-IET  152 (643)
Q Consensus        74 ~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~-~~~  152 (643)
                      ......++.+|+||+|+|+..+.+..+-  .+.+.+    .++|+|+|+||+|+.+.       +..+.+.+.|.. ...
T Consensus         7 r~i~~~i~~~DvIl~V~DaR~P~ss~~~--~l~~~~----~~Kp~IlVlNK~DLv~~-------~~~~~w~~~f~~~~~~   73 (273)
T d1puja_           7 REVTEKLKLIDIVYELVDARIPMSSRNP--MIEDIL----KNKPRIMLLNKADKADA-------AVTQQWKEHFENQGIR   73 (273)
T ss_dssp             HHHHHHGGGCSEEEEEEETTSTTTTSCH--HHHHHC----SSSCEEEEEECGGGSCH-------HHHHHHHHHHHTTTCC
T ss_pred             HHHHHHHHhCCEEEEEEECCCCCCCCCH--HHHHHH----cCCCeEEEEECccCCch-------HHHHHHHHHHHhcCCc
Confidence            3455789999999999999888665442  122332    27899999999999753       223344444421 135


Q ss_pred             EEEeCcccCCChhHHHHHHHH
Q 006490          153 CVECSATTMIQVPDVFYYAQK  173 (643)
Q Consensus       153 ~~~~Sa~~~~gi~~l~~~i~~  173 (643)
                      ++.+|+.++.|+.++...+.+
T Consensus        74 ~i~isa~~~~~~~~~~~~~~~   94 (273)
T d1puja_          74 SLSINSVNGQGLNQIVPASKE   94 (273)
T ss_dssp             EEECCTTTCTTGGGHHHHHHH
T ss_pred             cceeecccCCCccccchhhhh
Confidence            899999999999887765443

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.40  E-value=9.4e-13  Score=135.83  Aligned_cols=160  Identities=16%  Similarity=0.102  Sum_probs=97.0

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCCCCC---CCCCCCCeeeCCcc-cCCceeEEEEeCCCCCcchhhhH-----Hhhc
Q 006490           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEK---VPPVHAPTRLPPDF-YPDRVPVTIIDTSSSLENKGKLN-----EELK   81 (643)
Q Consensus        11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~-----~~~~   81 (643)
                      ..++|+|+|.+|||||||+|+|++......   ..++.++|+....+ ..+...+.+|||||........+     ..+.
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~~~~~~~l~DtPG~~~~~~~~~~~~~~~~~~  134 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFY  134 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeeccCCCeEEEEeCCCcccccccHHHHHHHhhhh
Confidence            358999999999999999999998653221   22222233322222 23344689999999865332222     3466


Q ss_pred             cCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCC------CccchhhhhhhHHHH----hh---c
Q 006490           82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD------HNATSLEEVMGPIMQ----QF---R  148 (643)
Q Consensus        82 ~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~------~~~~~~~~~~~~~~~----~~---~  148 (643)
                      .+|++|++.|  .+.+-.+.  .+++.+++.  ++|+++|.||+|....      ......+..+..+.+    .+   +
T Consensus       135 ~~d~~l~~~~--~~~~~~d~--~l~~~l~~~--~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l~~~~  208 (400)
T d1tq4a_         135 EYDFFIIISA--TRFKKNDI--DIAKAISMM--KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENG  208 (400)
T ss_dssp             GCSEEEEEES--SCCCHHHH--HHHHHHHHT--TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTT
T ss_pred             cceEEEEecC--CCCCHHHH--HHHHHHHHc--CCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHHHHHcC
Confidence            7899999887  33333333  477888877  8999999999995311      000011222222221    11   1


Q ss_pred             -ccceEEEeCccc--CCChhHHHHHHHHHHh
Q 006490          149 -EIETCVECSATT--MIQVPDVFYYAQKAVL  176 (643)
Q Consensus       149 -~~~~~~~~Sa~~--~~gi~~l~~~i~~~~~  176 (643)
                       ...+++.+|...  ..|+.+|.+.+.+.+.
T Consensus       209 ~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~  239 (400)
T d1tq4a_         209 IAEPPIFLLSNKNVCHYDFPVLMDKLISDLP  239 (400)
T ss_dssp             CSSCCEEECCTTCTTSTTHHHHHHHHHHHSC
T ss_pred             CCCCCEEEecCCcccccCHHHHHHHHHHHhH
Confidence             122567888764  4588888888877654

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.38  E-value=2.1e-13  Score=130.14  Aligned_cols=154  Identities=17%  Similarity=0.125  Sum_probs=100.4

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCC--CC---------------C-C--------------CCCCCCCeeeCCcccC
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATES--VP---------------E-K--------------VPPVHAPTRLPPDFYP   56 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~--~~---------------~-~--------------~~~~~~~~~~~~~~~~   56 (643)
                      .+++++|+++|+.++|||||+.+|+...  +.               . .              ..+. +.......+..
T Consensus         3 ~k~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGi-Ti~~~~~~~~~   81 (239)
T d1f60a3           3 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGI-TIDIALWKFET   81 (239)
T ss_dssp             CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTC-CCSCSCEEEEC
T ss_pred             CCCccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhccee-ccccceeEecc
Confidence            3556899999999999999999996321  00               0 0              0010 00112234456


Q ss_pred             CceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECCCccc-----HHHHHHHHHHHHHhcCCCCc-EEEEEecccCCCC
Q 006490           57 DRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQST-----LSRLSSYWLPELRRLEIKVP-IIVAGCKLDLRGD  130 (643)
Q Consensus        57 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~~~s-----~~~~~~~~~~~l~~~~~~~p-vilv~NK~D~~~~  130 (643)
                      .+++++|+||||+.+|...+...+..+|++|+|+|+....-     .+....+-+...+..  ++| +|+++||+|+.+.
T Consensus        82 ~~~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~~--gv~~iiv~iNKmD~~~~  159 (239)
T d1f60a3          82 PKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTL--GVRQLIVAVNKMDSVKW  159 (239)
T ss_dssp             SSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHT--TCCEEEEEEECGGGGTT
T ss_pred             CCEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHHc--CCCeEEEEEECCCCCCC
Confidence            78899999999999999999999999999999999875421     111111233344555  565 7889999998765


Q ss_pred             Cccchhhhh---hhHHHHhhcc---cceEEEeCcccCCChhH
Q 006490          131 HNATSLEEV---MGPIMQQFRE---IETCVECSATTMIQVPD  166 (643)
Q Consensus       131 ~~~~~~~~~---~~~~~~~~~~---~~~~~~~Sa~~~~gi~~  166 (643)
                      ... ..++.   +..+....+.   ..+++++|+..|.|+-+
T Consensus       160 d~~-~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~  200 (239)
T d1f60a3         160 DES-RFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  200 (239)
T ss_dssp             CHH-HHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             CHH-HHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCccee
Confidence            432 22222   3333333332   13579999999999864

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.34  E-value=7.1e-13  Score=125.85  Aligned_cols=155  Identities=16%  Similarity=0.147  Sum_probs=96.5

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCC--------------------------------CCCCCCCCCeeeCCcccCC
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATESVP--------------------------------EKVPPVHAPTRLPPDFYPD   57 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~   57 (643)
                      +++++|+++|+-++|||||+.+|+...-.                                +...+ .........+..+
T Consensus         1 kp~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg-~ti~~~~~~~~~~   79 (224)
T d1jnya3           1 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERG-VTINLTFMRFETK   79 (224)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC------------CEEECS
T ss_pred             CCccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCC-ccccceEEEEecC
Confidence            35789999999999999999998632100                                00011 0011123345567


Q ss_pred             ceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECCCcccHHH-----HHHHHHHHHHhcCCCCcEEEEEecccCCCCCc
Q 006490           58 RVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSR-----LSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN  132 (643)
Q Consensus        58 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~-----~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~  132 (643)
                      ++.++|+||||+..|...+...++-+|++|+|+|+........     ...+-+...+..+ ..++|+++||+|+.....
T Consensus        80 ~~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~~-~~~iIv~iNK~D~~~~~~  158 (224)
T d1jnya3          80 KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMG-LDQLIVAVNKMDLTEPPY  158 (224)
T ss_dssp             SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTT-CTTCEEEEECGGGSSSTT
T ss_pred             CceeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHhC-CCceEEEEEcccCCCccc
Confidence            8899999999999999999999999999999999886522111     1111222222231 356889999999875321


Q ss_pred             cc-hhh---hhhhHHHHhhcc---cceEEEeCcccCCChhH
Q 006490          133 AT-SLE---EVMGPIMQQFRE---IETCVECSATTMIQVPD  166 (643)
Q Consensus       133 ~~-~~~---~~~~~~~~~~~~---~~~~~~~Sa~~~~gi~~  166 (643)
                      .. ..+   ..+..+...++.   -.+++++||..|.||.+
T Consensus       159 ~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~  199 (224)
T d1jnya3         159 DEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH  199 (224)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred             cHHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence            10 112   222333333321   12578999999999864

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.34  E-value=1.5e-12  Score=124.82  Aligned_cols=158  Identities=15%  Similarity=0.083  Sum_probs=88.2

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCCC------------------------CCCCCCC-----CCe--eeCCcccCC
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVP------------------------EKVPPVH-----APT--RLPPDFYPD   57 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~------------------------~~~~~~~-----~~~--~~~~~~~~~   57 (643)
                      .++.++|+++|+.++|||||+.+|+...-.                        .......     +.+  .....+...
T Consensus        21 ~k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~  100 (245)
T d1r5ba3          21 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE  100 (245)
T ss_dssp             CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS
T ss_pred             CCCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCccccccccccccc
Confidence            355678999999999999999999531100                        0000000     000  022234456


Q ss_pred             ceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECCCcccH-----H-HHHHHHHHHHHhcCCCC-cEEEEEecccCCCC
Q 006490           58 RVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTL-----S-RLSSYWLPELRRLEIKV-PIIVAGCKLDLRGD  130 (643)
Q Consensus        58 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~~~s~-----~-~~~~~~~~~l~~~~~~~-pvilv~NK~D~~~~  130 (643)
                      +..+.++||||...|.......+..+|++++|+|+....--     . ... ..+..+...  ++ ++++++||+|+...
T Consensus       101 ~~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~-e~l~l~~~~--~i~~iiv~iNKmD~~~~  177 (245)
T d1r5ba3         101 HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTR-EHAVLARTQ--GINHLVVVINKMDEPSV  177 (245)
T ss_dssp             SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHH-HHHHHHHHT--TCSSEEEEEECTTSTTC
T ss_pred             cceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchH-HHHHHHHHc--CCCeEEEEEEcCCCCcc
Confidence            78899999999999988888999999999999998764211     0 111 233334444  45 48899999998753


Q ss_pred             Ccc-chhhhhhhHHH---Hhhcc-----cceEEEeCcccCCChhHHHH
Q 006490          131 HNA-TSLEEVMGPIM---QQFRE-----IETCVECSATTMIQVPDVFY  169 (643)
Q Consensus       131 ~~~-~~~~~~~~~~~---~~~~~-----~~~~~~~Sa~~~~gi~~l~~  169 (643)
                      ... ...++....+.   .++..     -.+++++||++|.||.++++
T Consensus       178 ~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~  225 (245)
T d1r5ba3         178 QWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD  225 (245)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred             chhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchh
Confidence            211 01222222222   22221     12689999999999987654

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.30  E-value=5.6e-12  Score=129.89  Aligned_cols=156  Identities=15%  Similarity=0.155  Sum_probs=96.1

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCC----C--CCcccceEEEEEEcCCCcEEEEEEecCCchhhhhh-hc--c
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENY----A--PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKI-LS--N  491 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~----~--~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~-~~--~  491 (643)
                      ..+++|+|+|+||||||||+|+|+|.......    .  +||.+.   ..+..+ +...+.+|||+|......- ..  .
T Consensus        54 ~~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~---~~~~~~-~~~~~~l~DtPG~~~~~~~~~~~~~  129 (400)
T d1tq4a_          54 SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMER---HPYKHP-NIPNVVFWDLPGIGSTNFPPDTYLE  129 (400)
T ss_dssp             HCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCC---EEEECS-SCTTEEEEECCCGGGSSCCHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceee---eeeecc-CCCeEEEEeCCCcccccccHHHHHH
Confidence            45799999999999999999999985432221    1  233332   223344 3344668999995432210 00  2


Q ss_pred             HHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcc------------cc----HHHH
Q 006490          492 KEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT------------MA----VQDS  555 (643)
Q Consensus       492 ~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~------------~~----~~~~  555 (643)
                      ...+..+|+++++.|..-.   +....++..+.+.      ++|+++|.||+|.....            ..    .+..
T Consensus       130 ~~~~~~~d~~l~~~~~~~~---~~d~~l~~~l~~~------~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~  200 (400)
T d1tq4a_         130 KMKFYEYDFFIIISATRFK---KNDIDIAKAISMM------KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNC  200 (400)
T ss_dssp             HTTGGGCSEEEEEESSCCC---HHHHHHHHHHHHT------TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHH
T ss_pred             HhhhhcceEEEEecCCCCC---HHHHHHHHHHHHc------CCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHH
Confidence            3346789999888875432   3344556666665      89999999999964210            00    1111


Q ss_pred             HHHHHHhCCC--CcEEeeecc--C-CHHHHHHHHHHHHh
Q 006490          556 ARVTQELGIE--PPIPVSMKS--K-DLNNVFSRIIWAAE  589 (643)
Q Consensus       556 ~~~~~~~~~~--~~~~vSa~~--g-~i~~l~~~l~~~~~  589 (643)
                      ....+..+..  +++.+|...  . |+.+|.+.+.+.+.
T Consensus       201 ~~~l~~~~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~  239 (400)
T d1tq4a_         201 VNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLP  239 (400)
T ss_dssp             HHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSC
T ss_pred             HHHHHHcCCCCCCEEEecCCcccccCHHHHHHHHHHHhH
Confidence            2223333433  678889865  3 79999999888764

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.29  E-value=6.4e-12  Score=121.66  Aligned_cols=121  Identities=16%  Similarity=0.063  Sum_probs=78.6

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhH---------
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEK--VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLN---------   77 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~---------   77 (643)
                      ....++|+|+|.+|||||||+|+|++......  .++++. ..........+..+.++||||+.+......         
T Consensus        29 ~~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~-~~~~~~~~~~g~~i~viDTPGl~~~~~~~~~~~~~i~~~  107 (257)
T d1h65a_          29 DVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGP-RPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSF  107 (257)
T ss_dssp             TCCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCS-SCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcce-eEEEEEEEeccEEEEEEeeecccCCcchHHHHHHHHHHH
Confidence            35679999999999999999999999874332  223221 123334456778999999999864321111         


Q ss_pred             HhhccCCEEEEEEECCCc-ccHHHHHHHHHHHHHhc-CC--CCcEEEEEecccCCCCCc
Q 006490           78 EELKRADAVVLTYACNQQ-STLSRLSSYWLPELRRL-EI--KVPIIVAGCKLDLRGDHN  132 (643)
Q Consensus        78 ~~~~~ad~il~v~d~~~~-~s~~~~~~~~~~~l~~~-~~--~~pvilv~NK~D~~~~~~  132 (643)
                      ......|+++||++++.. -+....  ..+..+... +.  -.++|+|.||+|......
T Consensus       108 ~~~~~~~~il~v~~~~~~r~~~~~~--~~l~~l~~~fg~~~~~~~ivv~t~~D~~~~~~  164 (257)
T d1h65a_         108 LLDKTIDVLLYVDRLDAYRVDNLDK--LVAKAITDSFGKGIWNKAIVALTHAQFSPPDG  164 (257)
T ss_dssp             TTTCEECEEEEEEESSCCCCCHHHH--HHHHHHHHHHCGGGGGGEEEEEECCSCCCGGG
T ss_pred             HhcCCCCeEEEEEECCCCCCCHHHH--HHHHHHHHHcchhhhhCEEEEEECcccCCcCC
Confidence            123457999999998654 233322  234444332 21  368999999999876443

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.24  E-value=5.7e-11  Score=114.83  Aligned_cols=124  Identities=12%  Similarity=0.052  Sum_probs=78.4

Q ss_pred             cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC--CCcccceEEEEEEcCCCcEEEEEEecCCchhhhh-------hhc
Q 006490          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYA--PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK-------ILS  490 (643)
Q Consensus       420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~--~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~-------~~~  490 (643)
                      ....++|+|+|++|||||||+|+|+|++...++.  ++|+... .......  ...+.++||+|-.....       ...
T Consensus        29 ~~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~-~~~~~~~--g~~i~viDTPGl~~~~~~~~~~~~~i~  105 (257)
T d1h65a_          29 DVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPV-MVSRSRA--GFTLNIIDTPGLIEGGYINDMALNIIK  105 (257)
T ss_dssp             TCCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCE-EEEEEET--TEEEEEEECCCSEETTEECHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEE-EEEEEec--cEEEEEEeeecccCCcchHHHHHHHHH
Confidence            3567999999999999999999999998777665  3444322 3333343  35678899999421111       101


Q ss_pred             cHHhhccCCEEEEEEeCCCh-hhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCc
Q 006490          491 NKEALASCDVTIFVYDSSDE-YSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPY  548 (643)
Q Consensus       491 ~~~~~~~ad~illv~D~s~~-~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~  548 (643)
                      ........|++++|++++.. .+ ......+..+....... ...++++|+||+|...+
T Consensus       106 ~~~~~~~~~~il~v~~~~~~r~~-~~~~~~l~~l~~~fg~~-~~~~~ivv~t~~D~~~~  162 (257)
T d1h65a_         106 SFLLDKTIDVLLYVDRLDAYRVD-NLDKLVAKAITDSFGKG-IWNKAIVALTHAQFSPP  162 (257)
T ss_dssp             HHTTTCEECEEEEEEESSCCCCC-HHHHHHHHHHHHHHCGG-GGGGEEEEEECCSCCCG
T ss_pred             HHHhcCCCCeEEEEEECCCCCCC-HHHHHHHHHHHHHcchh-hhhCEEEEEECcccCCc
Confidence            11223567999999998753 22 22333344444332211 03689999999998764

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.22  E-value=1.9e-11  Score=116.41  Aligned_cols=149  Identities=14%  Similarity=0.178  Sum_probs=98.4

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCCC-----------------CC--------------CCCcccceEEEEEEcCC
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSE-----------------NY--------------APTTGEQYAVNVVDQPG  469 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~-----------------~~--------------~~t~~~~~~~~~v~~~g  469 (643)
                      +..++|+++|..++|||||+.+|+...-..                 ..              ....+.+.....+.+. 
T Consensus         4 k~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~-   82 (239)
T d1f60a3           4 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETP-   82 (239)
T ss_dssp             CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECS-
T ss_pred             CCccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccC-
Confidence            345899999999999999999996311000                 00              0011222334445554 


Q ss_pred             CcEEEEEEecCCchhhhhhhccHHhhccCCEEEEEEeCCChhhH------HHHHHHHHHHHHhcCCCCCCCc-EEEEEeC
Q 006490          470 GNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSW------KRTKELLVEVARLGEDSGYGVP-CLLIASK  542 (643)
Q Consensus       470 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv~D~s~~~s~------~~~~~~~~~i~~~~~~~~~~~p-vilv~NK  542 (643)
                       .+++.++|++|+..|-.-  ....+..+|++|+|+|+.++..-      .+..+.+......      ++| +|+++||
T Consensus        83 -~~~i~iiDtPGH~df~~~--~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~~------gv~~iiv~iNK  153 (239)
T d1f60a3          83 -KYQVTVIDAPGHRDFIKN--MITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTL------GVRQLIVAVNK  153 (239)
T ss_dssp             -SEEEEEEECCCCTTHHHH--HHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHT------TCCEEEEEEEC
T ss_pred             -CEEEEEEECCCcHHHHHH--HHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHHc------CCCeEEEEEEC
Confidence             478889999999988765  67888999999999999876310      1223333333333      665 7889999


Q ss_pred             CCCCCcccc-----HHHHHHHHHHhCCC----CcEEeeeccC-CHHH
Q 006490          543 DDLKPYTMA-----VQDSARVTQELGIE----PPIPVSMKSK-DLNN  579 (643)
Q Consensus       543 ~Dl~~~~~~-----~~~~~~~~~~~~~~----~~~~vSa~~g-~i~~  579 (643)
                      +|+.+....     ..+...+....++.    +++++||.+| |+.+
T Consensus       154 mD~~~~d~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~  200 (239)
T d1f60a3         154 MDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  200 (239)
T ss_dssp             GGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCccee
Confidence            998763221     34455566666653    5789999999 8643

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.22  E-value=2.3e-11  Score=116.32  Aligned_cols=154  Identities=15%  Similarity=0.163  Sum_probs=85.4

Q ss_pred             cCceEEEEEEcCCCCCHHHHHHHHhcCCCCC------------------------CCCCC-------cccceEEEEEEcC
Q 006490          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSE------------------------NYAPT-------TGEQYAVNVVDQP  468 (643)
Q Consensus       420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~------------------------~~~~t-------~~~~~~~~~v~~~  468 (643)
                      .+..++|+|+|..++|||||+.+|+...-..                        .....       ...........+ 
T Consensus        21 ~k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~-   99 (245)
T d1r5ba3          21 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET-   99 (245)
T ss_dssp             CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC-
T ss_pred             CCCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCcccccccccccc-
Confidence            3456899999999999999999995311000                        00000       000011112222 


Q ss_pred             CCcEEEEEEecCCchhhhhhhccHHhhccCCEEEEEEeCCChhhHH------HHHHHHHHHHHhcCCCCCCCc-EEEEEe
Q 006490          469 GGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWK------RTKELLVEVARLGEDSGYGVP-CLLIAS  541 (643)
Q Consensus       469 g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv~D~s~~~s~~------~~~~~~~~i~~~~~~~~~~~p-vilv~N  541 (643)
                       ....+.++|++|+..+-..  .......+|++++|+|+.++..-+      +..+.+..+...      ++| +++++|
T Consensus       100 -~~~~i~~iDtPGH~df~~~--~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~------~i~~iiv~iN  170 (245)
T d1r5ba3         100 -EHRRFSLLDAPGHKGYVTN--MINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQ------GINHLVVVIN  170 (245)
T ss_dssp             -SSEEEEECCCCC-------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHT------TCSSEEEEEE
T ss_pred             -ccceeeeecccccccchhh--hhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHc------CCCeEEEEEE
Confidence             3456788999999887665  677889999999999998863210      233333333333      554 889999


Q ss_pred             CCCCCCcccc-------HHHHHHHHHHh-CCC-----CcEEeeeccC-CHHHHHHH
Q 006490          542 KDDLKPYTMA-------VQDSARVTQEL-GIE-----PPIPVSMKSK-DLNNVFSR  583 (643)
Q Consensus       542 K~Dl~~~~~~-------~~~~~~~~~~~-~~~-----~~~~vSa~~g-~i~~l~~~  583 (643)
                      |+|+......       .+....+...+ ++.     +++++||++| |+.++++.
T Consensus       171 KmD~~~~~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~s  226 (245)
T d1r5ba3         171 KMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDS  226 (245)
T ss_dssp             CTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCCT
T ss_pred             cCCCCccchhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchhc
Confidence            9999743221       22223333333 332     5899999999 99776544

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.21  E-value=2.9e-11  Score=112.21  Aligned_cols=84  Identities=14%  Similarity=0.162  Sum_probs=58.7

Q ss_pred             hccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcc
Q 006490           80 LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT  159 (643)
Q Consensus        80 ~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  159 (643)
                      +.+.|.+++|+++..|..-....++++-.....  ++|.+||.||+|+.+..    ..+....+...+...++++.+||+
T Consensus         8 vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~~--~i~pvIvlnK~DL~~~~----~~~~~~~~~~~~~~~~~v~~vSa~   81 (225)
T d1u0la2           8 VANVDQVILVVTVKMPETSTYIIDKFLVLAEKN--ELETVMVINKMDLYDED----DLRKVRELEEIYSGLYPIVKTSAK   81 (225)
T ss_dssp             EESCCEEEEEECSSTTCCCHHHHHHHHHHHHHT--TCEEEEEECCGGGCCHH----HHHHHHHHHHHHTTTSCEEECCTT
T ss_pred             cccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHc--CCCEEEEEeCcccCCHH----HHHHHHHhhcccccceeEEEeccc
Confidence            467899999999888644333333577666666  89999999999997532    112233344444444678999999


Q ss_pred             cCCChhHHHH
Q 006490          160 TMIQVPDVFY  169 (643)
Q Consensus       160 ~~~gi~~l~~  169 (643)
                      ++.|+++|..
T Consensus        82 ~~~g~~~L~~   91 (225)
T d1u0la2          82 TGMGIEELKE   91 (225)
T ss_dssp             TCTTHHHHHH
T ss_pred             cchhHhhHHH
Confidence            9999987654

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.20  E-value=6.7e-11  Score=113.80  Aligned_cols=111  Identities=17%  Similarity=0.196  Sum_probs=79.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCC-----CCC-Cc------------ccceEEEEEEcCCCcEEEEEEecCCchhhh
Q 006490          425 RCLLFGPQNAGKSALLNSFLERPFSEN-----YAP-TT------------GEQYAVNVVDQPGGNKKTLILQEIPEEGVK  486 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~~~~~~-----~~~-t~------------~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~  486 (643)
                      +|+|+|..++|||||+.+|+...-...     ... |.            +.......+.+.  ..++.++||+|+..|.
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~--~~~~n~iDtPGh~dF~   81 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFR--GHRVFLLDAPGYGDFV   81 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEET--TEEEEEEECCCSGGGH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeeccccccc--ccceeEEccCchhhhh
Confidence            599999999999999999974221111     111 11            112334445554  4577889999998886


Q ss_pred             hhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCC
Q 006490          487 KILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLK  546 (643)
Q Consensus       487 ~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~  546 (643)
                      .-  ....++-+|++|+|+|+.++..-+. ...+..+.+.      ++|.++++||+|..
T Consensus        82 ~e--~~~al~~~D~avlvvda~~Gv~~~t-~~~~~~~~~~------~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          82 GE--IRGALEAADAALVAVSAEAGVQVGT-ERAWTVAERL------GLPRMVVVTKLDKG  132 (267)
T ss_dssp             HH--HHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHHT------TCCEEEEEECGGGC
T ss_pred             hh--hhhhhcccCceEEEeeccCCccchh-HHHHHhhhhc------cccccccccccccc
Confidence            65  6789999999999999999876443 4444455554      89999999999975

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.15  E-value=3e-11  Score=114.39  Aligned_cols=148  Identities=14%  Similarity=0.130  Sum_probs=92.7

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCC-------------------------------CCCCCcccceEEEEEEcCCCc
Q 006490          423 VFRCLLFGPQNAGKSALLNSFLERPFSE-------------------------------NYAPTTGEQYAVNVVDQPGGN  471 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~-------------------------------~~~~t~~~~~~~~~v~~~g~~  471 (643)
                      .++|+++|.-++|||||+.+|+...-..                               ..............++.  ..
T Consensus         3 ~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~--~~   80 (224)
T d1jnya3           3 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFET--KK   80 (224)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEEC--SS
T ss_pred             ccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEec--CC
Confidence            5799999999999999999996311000                               00000111112222333  34


Q ss_pred             EEEEEEecCCchhhhhhhccHHhhccCCEEEEEEeCCChhhHH------HHHHHHHHHHHhcCCCCCCCcEEEEEeCCCC
Q 006490          472 KKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWK------RTKELLVEVARLGEDSGYGVPCLLIASKDDL  545 (643)
Q Consensus       472 ~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv~D~s~~~s~~------~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl  545 (643)
                      ..+.++|++|+..|...  ....+.-||++|+|+|+.++..-+      +..+.+...... .    -.++|+++||+|+
T Consensus        81 ~~i~iiDtPGH~df~~~--~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~-~----~~~iIv~iNK~D~  153 (224)
T d1jnya3          81 YFFTIIDAPGHRDFVKN--MITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTM-G----LDQLIVAVNKMDL  153 (224)
T ss_dssp             CEEEECCCSSSTTHHHH--HHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHT-T----CTTCEEEEECGGG
T ss_pred             ceeEEeeCCCcHHHHHH--HHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHh-C----CCceEEEEEcccC
Confidence            66788999999988776  678889999999999999874211      222222222222 1    3468889999998


Q ss_pred             CCcccc-------HHHHHHHHHHhCCC----CcEEeeeccC-CHHH
Q 006490          546 KPYTMA-------VQDSARVTQELGIE----PPIPVSMKSK-DLNN  579 (643)
Q Consensus       546 ~~~~~~-------~~~~~~~~~~~~~~----~~~~vSa~~g-~i~~  579 (643)
                      ......       ...+..+...++..    +++++||.+| |+.+
T Consensus       154 ~~~~~~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~  199 (224)
T d1jnya3         154 TEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH  199 (224)
T ss_dssp             SSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred             CCccccHHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence            753211       34455556666654    4689999999 8743

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.12  E-value=9.6e-11  Score=116.59  Aligned_cols=116  Identities=15%  Similarity=0.187  Sum_probs=81.8

Q ss_pred             CCccE-EEEEcCCCCCHHHHHHHHhcCC--CCCCCC---------------CCC-CCeeeCC--------------cccC
Q 006490           10 RTGVR-VVVVGDRGTGKSSLIAAAATES--VPEKVP---------------PVH-APTRLPP--------------DFYP   56 (643)
Q Consensus        10 ~~~~k-I~lvG~~~vGKSsL~n~l~~~~--~~~~~~---------------~~~-~~~~~~~--------------~~~~   56 (643)
                      +..+| |+|+|+.++|||||+.+|+...  ......               +.. .......              ....
T Consensus        14 ~~~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~   93 (341)
T d1n0ua2          14 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG   93 (341)
T ss_dssp             GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred             cccCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccc
Confidence            34564 9999999999999999997321  100000               000 0000000              1123


Q ss_pred             CceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCC
Q 006490           57 DRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRG  129 (643)
Q Consensus        57 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~  129 (643)
                      +.+.++++||||+.+|......+++-+|++|+|+|+...-..+...  .++.....  ++|+++|+||+|...
T Consensus        94 ~~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~--~~~~a~~~--~~p~i~viNKiDr~~  162 (341)
T d1n0ua2          94 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTET--VLRQALGE--RIKPVVVINKVDRAL  162 (341)
T ss_dssp             SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHH--HHHHHHHT--TCEEEEEEECHHHHH
T ss_pred             cceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHH--HHHHHHHc--CCCeEEEEECccccc
Confidence            5677999999999999999999999999999999988876666553  55555555  799999999999653

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.11  E-value=1.3e-10  Score=111.87  Aligned_cols=129  Identities=16%  Similarity=0.067  Sum_probs=90.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCC-----CCCC-Cc------------ccceEEEEEEcCCCcEEEEEEecCCchhhh
Q 006490          425 RCLLFGPQNAGKSALLNSFLERPFSE-----NYAP-TT------------GEQYAVNVVDQPGGNKKTLILQEIPEEGVK  486 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~~~~~-----~~~~-t~------------~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~  486 (643)
                      +|+|+|..++|||||+.+|+...-..     +... |+            +.......+.+  ...++.++||+|+..|-
T Consensus         8 ni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~--~~~~~n~iDtPG~~dF~   85 (276)
T d2bv3a2           8 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFW--KDHRINIIDAPGHVDFT   85 (276)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEE--TTEEEEEECCCSSSSCS
T ss_pred             EEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeecc--CCeEEEEecCCchhhhH
Confidence            69999999999999999997321110     1001 11            11222333444  45678889999998876


Q ss_pred             hhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCC
Q 006490          487 KILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE  565 (643)
Q Consensus       487 ~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~  565 (643)
                      .-  ....+..+|++|+|+|+.++..-+. ...+....++      ++|.++++||+|.... ...+.++++.+.++..
T Consensus        86 ~e--~~~~l~~~D~avlVvda~~Gv~~~T-~~~w~~a~~~------~lP~i~fINKmDr~~a-d~~~~l~ei~~~l~~~  154 (276)
T d2bv3a2          86 IE--VERSMRVLDGAIVVFDSSQGVEPQS-ETVWRQAEKY------KVPRIAFANKMDKTGA-DLWLVIRTMQERLGAR  154 (276)
T ss_dssp             TT--HHHHHHHCCEEEEEEETTTSSCHHH-HHHHHHHHTT------TCCEEEEEECTTSTTC-CHHHHHHHHHHTTCCC
T ss_pred             HH--HHHHHHhhhheEEeccccCCcchhH-HHHHHHHHHc------CCCEEEEEeccccccc-ccchhHHHHHHHhCCC
Confidence            54  6788999999999999999876444 4444555554      8999999999998763 3366778888888876

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.01  E-value=3e-10  Score=108.88  Aligned_cols=115  Identities=17%  Similarity=-0.018  Sum_probs=68.0

Q ss_pred             ceeEEEEeCCCCCcchhhhH---Hh--hccCCEEEEEEECCCcccHHHHHHHHHH-H--HHhcCCCCcEEEEEecccCCC
Q 006490           58 RVPVTIIDTSSSLENKGKLN---EE--LKRADAVVLTYACNQQSTLSRLSSYWLP-E--LRRLEIKVPIIVAGCKLDLRG  129 (643)
Q Consensus        58 ~~~~~i~Dt~G~~~~~~~~~---~~--~~~ad~il~v~d~~~~~s~~~~~~~~~~-~--l~~~~~~~pvilv~NK~D~~~  129 (643)
                      ...+.++|+||+........   ..  ....+.+++++|+.............+. .  ..+.  ..|.++|+||+|+..
T Consensus        94 ~~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~~--~~~~ivvinK~D~~~  171 (244)
T d1yrba1          94 ENDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRL--GATTIPALNKVDLLS  171 (244)
T ss_dssp             HCSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHHH--TSCEEEEECCGGGCC
T ss_pred             ccceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHHh--CCCceeeeecccccc
Confidence            44589999999875433222   11  2345789999997654443333221111 1  1223  789999999999886


Q ss_pred             CCccchh---------------------h---hhhhHHHHhhcccceEEEeCcccCCChhHHHHHHHHH
Q 006490          130 DHNATSL---------------------E---EVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKA  174 (643)
Q Consensus       130 ~~~~~~~---------------------~---~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~  174 (643)
                      .......                     .   ..+....+.+....+++++||++|+|+++|++.+.+.
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~  240 (244)
T d1yrba1         172 EEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEH  240 (244)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            4211000                     0   0001111222233478999999999999999987764

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=98.99  E-value=5.2e-10  Score=107.15  Aligned_cols=110  Identities=10%  Similarity=0.011  Sum_probs=66.2

Q ss_pred             EEEEEecCCchhhhhhhccHHh---hccCCEEEEEEeCCChh---hHHHHHHHHHH-HHHhcCCCCCCCcEEEEEeCCCC
Q 006490          473 KTLILQEIPEEGVKKILSNKEA---LASCDVTIFVYDSSDEY---SWKRTKELLVE-VARLGEDSGYGVPCLLIASKDDL  545 (643)
Q Consensus       473 ~~~i~d~~g~~~~~~~~~~~~~---~~~ad~illv~D~s~~~---s~~~~~~~~~~-i~~~~~~~~~~~pvilv~NK~Dl  545 (643)
                      .+.++|++|+........+...   ....+++++++|+....   .+......... ..+.      ..|.++|+||+|+
T Consensus        96 ~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~~------~~~~ivvinK~D~  169 (244)
T d1yrba1          96 DYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRL------GATTIPALNKVDL  169 (244)
T ss_dssp             SEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHHH------TSCEEEEECCGGG
T ss_pred             ceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHHh------CCCceeeeecccc
Confidence            4778899998765443212221   23567899999986432   22211111111 1222      7899999999999


Q ss_pred             CCccccHHH------H------------------HH----HHHHhCCCCcEEeeeccC-CHHHHHHHHHHHH
Q 006490          546 KPYTMAVQD------S------------------AR----VTQELGIEPPIPVSMKSK-DLNNVFSRIIWAA  588 (643)
Q Consensus       546 ~~~~~~~~~------~------------------~~----~~~~~~~~~~~~vSa~~g-~i~~l~~~l~~~~  588 (643)
                      .........      .                  ..    .....+..+++++||++| |+++|+..|.+.+
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~~  241 (244)
T d1yrba1         170 LSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHY  241 (244)
T ss_dssp             CCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            874321000      0                  00    111234456999999999 9999999998864

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.99  E-value=9e-11  Score=109.21  Aligned_cols=82  Identities=21%  Similarity=0.295  Sum_probs=54.9

Q ss_pred             hccCCEEEEEEECCCcc-cHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhccc-ceEEEeC
Q 006490           80 LKRADAVVLTYACNQQS-TLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREI-ETCVECS  157 (643)
Q Consensus        80 ~~~ad~il~v~d~~~~~-s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~S  157 (643)
                      +.+.|.+++|+++.++. +...++ +++-.....  +++.+||.||+|+..+..   ..+.+..+...+..+ .+++.+|
T Consensus         8 vANiD~~~iV~s~~~P~~~~~~id-R~Lv~a~~~--~i~pvIvlnK~DL~~~~~---~~~~~~~~~~~y~~~g~~v~~~S   81 (231)
T d1t9ha2           8 ICNVDQAVLVFSAVQPSFSTALLD-RFLVLVEAN--DIQPIICITKMDLIEDQD---TEDTIQAYAEDYRNIGYDVYLTS   81 (231)
T ss_dssp             EECCCEEEEEEESTTTTCCHHHHH-HHHHHHHTT--TCEEEEEEECGGGCCCHH---HHHHHHHHHHHHHHHTCCEEECC
T ss_pred             ccccCEEEEEEECCCCCCCHHHHH-HHHHHHHHc--CCCEEEEEecccccccHH---HHHHHHHHHHHHhhccccceeee
Confidence            46789999999988764 444444 566565555  899999999999976422   222233333333221 4689999


Q ss_pred             cccCCChhHH
Q 006490          158 ATTMIQVPDV  167 (643)
Q Consensus       158 a~~~~gi~~l  167 (643)
                      |+++.|+++|
T Consensus        82 a~~~~gl~~L   91 (231)
T d1t9ha2          82 SKDQDSLADI   91 (231)
T ss_dssp             HHHHTTCTTT
T ss_pred             cCChhHHHHH
Confidence            9988888643

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=98.96  E-value=1e-09  Score=108.83  Aligned_cols=153  Identities=20%  Similarity=0.190  Sum_probs=85.7

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhc------CCCCC-CCCCCcc-------------------cceEEEEEEcCCC----
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLE------RPFSE-NYAPTTG-------------------EQYAVNVVDQPGG----  470 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~------~~~~~-~~~~t~~-------------------~~~~~~~v~~~g~----  470 (643)
                      .+.++|.|.|+||||||||+++|..      .+... .-+|+..                   ....+......|.    
T Consensus        52 ~~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss~~~ggailgdr~rm~~~~~~~~~~ir~~~~~g~lgg~  131 (327)
T d2p67a1          52 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGA  131 (327)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CH
T ss_pred             CCceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCCceeeeccccccchhHHHHhcccccccccccccccccccc
Confidence            4578999999999999999999973      22211 1112111                   1122222221110    


Q ss_pred             --------------cEEEEEEecCCchhhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcE
Q 006490          471 --------------NKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPC  536 (643)
Q Consensus       471 --------------~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pv  536 (643)
                                    .....+++|.|.-.-     -......+|.+++|.+...++..+..+.-+.++           +=
T Consensus       132 ~~~~~~~~~~~~~~g~d~iliEtvG~gq~-----e~~i~~~aD~~l~v~~P~~Gd~iq~~k~gi~e~-----------aD  195 (327)
T d2p67a1         132 SQRARELMLLCEAAGYDVVIVETVGVGQS-----ETEVARMVDCFISLQIAGGGDDLQGIKKGLMEV-----------AD  195 (327)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEEEEECCTTH-----HHHHHTTCSEEEEEECC------CCCCHHHHHH-----------CS
T ss_pred             hhhhhHHHHHHHhcCCCeEEEeecccccc-----chhhhhccceEEEEecCCCchhhhhhchhhhcc-----------cc
Confidence                          012345566553221     123557899999999887776544433333222           33


Q ss_pred             EEEEeCCCCCCccccHHHHHHHHHH---h-----CC-CCcEEeeeccC-CHHHHHHHHHHHHh
Q 006490          537 LLIASKDDLKPYTMAVQDSARVTQE---L-----GI-EPPIPVSMKSK-DLNNVFSRIIWAAE  589 (643)
Q Consensus       537 ilv~NK~Dl~~~~~~~~~~~~~~~~---~-----~~-~~~~~vSa~~g-~i~~l~~~l~~~~~  589 (643)
                      ++|+||+|+...........++...   +     ++ +|++.|||++| |++++++.|.+...
T Consensus       196 i~VvNKaD~~~~~~~~~~~~~~~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~~  258 (327)
T d2p67a1         196 LIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  258 (327)
T ss_dssp             EEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             EEEEEeecccchHHHHHHHHHHHHHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHHHHHHH
Confidence            7888999987643332222233221   2     11 35899999999 99999999988654

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=98.93  E-value=6.3e-10  Score=110.39  Aligned_cols=155  Identities=16%  Similarity=0.171  Sum_probs=85.7

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhc------CCC--CCCCCCCCCC------eeeCCc--cc------------------
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAAT------ESV--PEKVPPVHAP------TRLPPD--FY------------------   55 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~------~~~--~~~~~~~~~~------~~~~~~--~~------------------   55 (643)
                      .+.++|.|.|+||||||||+++|+.      .++  ....|....+      .+..+.  ..                  
T Consensus        52 ~~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss~~~ggailgdr~rm~~~~~~~~~~ir~~~~~g~lgg~  131 (327)
T d2p67a1          52 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGA  131 (327)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CH
T ss_pred             CCceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCCceeeeccccccchhHHHHhcccccccccccccccccccc
Confidence            4578999999999999999999973      221  1111111100      000000  00                  


Q ss_pred             ------------CCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEe
Q 006490           56 ------------PDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGC  123 (643)
Q Consensus        56 ------------~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~N  123 (643)
                                  ..++.+.++.|.|.....   ......+|.+++|.++...+..+.....++        .++-++|+|
T Consensus       132 ~~~~~~~~~~~~~~g~d~iliEtvG~gq~e---~~i~~~aD~~l~v~~P~~Gd~iq~~k~gi~--------e~aDi~VvN  200 (327)
T d2p67a1         132 SQRARELMLLCEAAGYDVVIVETVGVGQSE---TEVARMVDCFISLQIAGGGDDLQGIKKGLM--------EVADLIVIN  200 (327)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEEEEECCTTHH---HHHHTTCSEEEEEECC------CCCCHHHH--------HHCSEEEEC
T ss_pred             hhhhhHHHHHHHhcCCCeEEEeeccccccc---hhhhhccceEEEEecCCCchhhhhhchhhh--------ccccEEEEE
Confidence                        124567788888754321   146678999999998765554443332222        234488999


Q ss_pred             cccCCCCCccchhhhhhhHHHHhhc----c-cceEEEeCcccCCChhHHHHHHHHHH
Q 006490          124 KLDLRGDHNATSLEEVMGPIMQQFR----E-IETCVECSATTMIQVPDVFYYAQKAV  175 (643)
Q Consensus       124 K~D~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~Sa~~~~gi~~l~~~i~~~~  175 (643)
                      |+|+...................+.    . ..+++.|||.+|.||++|++.|.+..
T Consensus       201 KaD~~~~~~~~~~~~~~~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~  257 (327)
T d2p67a1         201 KDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFK  257 (327)
T ss_dssp             CCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred             eecccchHHHHHHHHHHHHHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHHHHHH
Confidence            9998753221001111111111111    1 13689999999999999999887754

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.89  E-value=3.7e-09  Score=104.69  Aligned_cols=154  Identities=12%  Similarity=0.129  Sum_probs=87.9

Q ss_pred             cCceEEEEEEcCCCCCHHHHHHHHhcC------CCC-CCCCCCc-------------------ccceEEEEEEcCC----
Q 006490          420 ERNVFRCLLFGPQNAGKSALLNSFLER------PFS-ENYAPTT-------------------GEQYAVNVVDQPG----  469 (643)
Q Consensus       420 ~~~~~ki~ivG~~nvGKSSLln~l~~~------~~~-~~~~~t~-------------------~~~~~~~~v~~~g----  469 (643)
                      ..+.++|.|.|+||||||||+++|...      +.. ..-+|+.                   .....+....+.|    
T Consensus        48 ~~~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss~~~gg~llgdr~rm~~~~~~~~~~ir~~~~~~~~gg  127 (323)
T d2qm8a1          48 TGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGG  127 (323)
T ss_dssp             CCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHH
T ss_pred             cCCceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecccccHHHHhccccchhhHHHHhcccceeeccccccccccc
Confidence            345789999999999999999999842      111 0011110                   0111111111111    


Q ss_pred             --------------CcEEEEEEecCCchhhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCc
Q 006490          470 --------------GNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVP  535 (643)
Q Consensus       470 --------------~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~p  535 (643)
                                    -....+++.|.|.-.-+     .....-+|.+++|.....++..+..+.-+-+           ++
T Consensus       128 ~~~~~~~~i~~~~~~g~d~iiiETVG~gq~e-----~~~~~~~D~~v~v~~p~~GD~iQ~~k~gilE-----------~a  191 (323)
T d2qm8a1         128 VAAKTRETMLLCEAAGFDVILVETVGVGQSE-----TAVADLTDFFLVLMLPGAGDELQGIKKGIFE-----------LA  191 (323)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEEEECSSSSCH-----HHHHTTSSEEEEEECSCC------CCTTHHH-----------HC
T ss_pred             hhHHHHHHHHhhccCCCCeEEEeehhhhhhh-----hhhhcccceEEEEeeccchhhhhhhhhhHhh-----------hh
Confidence                          01244567777643221     2234669999999999988665443332222           23


Q ss_pred             EEEEEeCCCCCCccccHHHH-HHHHHHh---------CCCCcEEeeeccC-CHHHHHHHHHHHHh
Q 006490          536 CLLIASKDDLKPYTMAVQDS-ARVTQEL---------GIEPPIPVSMKSK-DLNNVFSRIIWAAE  589 (643)
Q Consensus       536 vilv~NK~Dl~~~~~~~~~~-~~~~~~~---------~~~~~~~vSa~~g-~i~~l~~~l~~~~~  589 (643)
                      =++|+||+|+.......... ..+...+         ..++++.+||++| |++++.++|.+...
T Consensus       192 Di~vvNKaD~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~  256 (323)
T d2qm8a1         192 DMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  256 (323)
T ss_dssp             SEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             heeeEeccccccchHHHHHHHHHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHH
Confidence            38899999987643332222 2233322         2236999999999 99999999988654

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.89  E-value=3e-09  Score=104.83  Aligned_cols=85  Identities=15%  Similarity=0.212  Sum_probs=58.1

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCC--CCCCCCCCCCeeeCC-ccc------------C---CceeEEEEeCCCCCc
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATESV--PEKVPPVHAPTRLPP-DFY------------P---DRVPVTIIDTSSSLE   71 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~--~~~~~~~~~~~~~~~-~~~------------~---~~~~~~i~Dt~G~~~   71 (643)
                      ...+||.|||.||||||||||+|++...  ..++|.++-...... .+.            .   ....+.++|.||...
T Consensus         8 ~~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~   87 (296)
T d1ni3a1           8 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK   87 (296)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeecccccc
Confidence            4568999999999999999999997653  456775432211111 111            1   134689999999764


Q ss_pred             ch-------hhhHHhhccCCEEEEEEECCC
Q 006490           72 NK-------GKLNEELKRADAVVLTYACNQ   94 (643)
Q Consensus        72 ~~-------~~~~~~~~~ad~il~v~d~~~   94 (643)
                      ..       ...-..++++|+++.|+|+..
T Consensus        88 gA~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          88 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             ccccccccHHHHHHHhhccceeEEEEeccC
Confidence            22       123366899999999999754

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.84  E-value=5.1e-09  Score=103.91  Aligned_cols=113  Identities=14%  Similarity=0.086  Sum_probs=75.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCC-----------CCCC-------CcccceEEEEEE------------cCCCcEEE
Q 006490          425 RCLLFGPQNAGKSALLNSFLERPFSE-----------NYAP-------TTGEQYAVNVVD------------QPGGNKKT  474 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~~~~~-----------~~~~-------t~~~~~~~~~v~------------~~g~~~~~  474 (643)
                      +|+|+|..++|||||+.+|+...-..           .+.+       |...........            ..+....+
T Consensus        19 NI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i   98 (341)
T d1n0ua2          19 NMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLI   98 (341)
T ss_dssp             EEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEEEE
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccccceEE
Confidence            49999999999999999997311110           0000       111111111111            12234567


Q ss_pred             EEEecCCchhhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCC
Q 006490          475 LILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLK  546 (643)
Q Consensus       475 ~i~d~~g~~~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~  546 (643)
                      .++||+|+..+..-  ...+++-+|++++|+|+.++...+...-| ....+.      ++|+++++||+|..
T Consensus        99 nliDtPGh~dF~~e--v~~al~~~D~allVVda~eGv~~qT~~~~-~~a~~~------~~p~i~viNKiDr~  161 (341)
T d1n0ua2          99 NLIDSPGHVDFSSE--VTAALRVTDGALVVVDTIEGVCVQTETVL-RQALGE------RIKPVVVINKVDRA  161 (341)
T ss_dssp             EEECCCCCCSSCHH--HHHHHHTCSEEEEEEETTTBSCHHHHHHH-HHHHHT------TCEEEEEEECHHHH
T ss_pred             EEEcCCCcHHHHHH--HHHHHhhcCceEEEEecccCcchhHHHHH-HHHHHc------CCCeEEEEECcccc
Confidence            78999999887665  67888999999999999998775544444 334444      89999999999975

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.82  E-value=1.8e-08  Score=99.10  Aligned_cols=87  Identities=18%  Similarity=0.140  Sum_probs=56.0

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCCCc-ccceEEEEEEcCCC---------------cEEEEEEecCCc
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERPFS--ENYAPTT-GEQYAVNVVDQPGG---------------NKKTLILQEIPE  482 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~--~~~~~t~-~~~~~~~~v~~~g~---------------~~~~~i~d~~g~  482 (643)
                      .+.+||.|||.||||||||+|++++...+  ..|+-|| .....+  +.++..               ...+.+.|.+|-
T Consensus         8 ~~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~--v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGL   85 (296)
T d1ni3a1           8 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAK--VAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL   85 (296)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEE--EEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEE--EeccccchhhhhhcccCCceecccceeeecccc
Confidence            35689999999999999999999987643  3343233 333322  333311               124567888872


Q ss_pred             hh-----hhhhhccHHhhccCCEEEEEEeCCC
Q 006490          483 EG-----VKKILSNKEALASCDVTIFVYDSSD  509 (643)
Q Consensus       483 ~~-----~~~~~~~~~~~~~ad~illv~D~s~  509 (643)
                      ..     ..--.+....++.||++++|+|+.+
T Consensus        86 v~gA~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          86 TKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             CCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             ccccccccccHHHHHHHhhccceeEEEEeccC
Confidence            11     1001225678899999999999865

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.81  E-value=4.4e-09  Score=104.11  Aligned_cols=106  Identities=8%  Similarity=0.008  Sum_probs=64.6

Q ss_pred             CceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchh
Q 006490           57 DRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSL  136 (643)
Q Consensus        57 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~  136 (643)
                      .++.+.|+.|.|......   ....-+|.+++|..+...+..+....-   .+     .++-++|+||+|+......  .
T Consensus       142 ~g~d~iiiETVG~gq~e~---~~~~~~D~~v~v~~p~~GD~iQ~~k~g---il-----E~aDi~vvNKaD~~~~~~~--~  208 (323)
T d2qm8a1         142 AGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIKKG---IF-----ELADMIAVNKADDGDGERR--A  208 (323)
T ss_dssp             TTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CCTT---HH-----HHCSEEEEECCSTTCCHHH--H
T ss_pred             CCCCeEEEeehhhhhhhh---hhhcccceEEEEeeccchhhhhhhhhh---Hh-----hhhheeeEeccccccchHH--H
Confidence            467888999998654322   345669999999998776655443211   11     2345899999998754322  1


Q ss_pred             hhhhhHHHHhhc--------ccceEEEeCcccCCChhHHHHHHHHHH
Q 006490          137 EEVMGPIMQQFR--------EIETCVECSATTMIQVPDVFYYAQKAV  175 (643)
Q Consensus       137 ~~~~~~~~~~~~--------~~~~~~~~Sa~~~~gi~~l~~~i~~~~  175 (643)
                      ......+...+.        ...+++.|||.+|.|++++.+.+.+..
T Consensus       209 ~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~  255 (323)
T d2qm8a1         209 SAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHR  255 (323)
T ss_dssp             HHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHH
Confidence            111111111111        123689999999999999999987754

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.76  E-value=4.6e-08  Score=95.18  Aligned_cols=81  Identities=19%  Similarity=0.313  Sum_probs=52.8

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCCCCCeeeCCc-------------ccCC---ceeEEEEeCCCCCcchh
Q 006490           12 GVRVVVVGDRGTGKSSLIAAAATESVP-EKVPPVHAPTRLPPD-------------FYPD---RVPVTIIDTSSSLENKG   74 (643)
Q Consensus        12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~-~~~~~~~~~~~~~~~-------------~~~~---~~~~~i~Dt~G~~~~~~   74 (643)
                      .+||.|||.||||||||||++++.+.. .++|.++-.......             +...   ...+.++|.||......
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~   81 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS   81 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCcc
Confidence            479999999999999999999987742 335543322221111             0111   12488999999865433


Q ss_pred             h-------hHHhhccCCEEEEEEEC
Q 006490           75 K-------LNEELKRADAVVLTYAC   92 (643)
Q Consensus        75 ~-------~~~~~~~ad~il~v~d~   92 (643)
                      .       .-..++++|+++.|+|+
T Consensus        82 ~g~Glg~~FL~~ir~~d~LihVVr~  106 (278)
T d1jala1          82 KGEGLGNKFLANIRETDAIGHVVRC  106 (278)
T ss_dssp             HHGGGTCCHHHHHHTCSEEEEEEEC
T ss_pred             cCCCccHHHHHHHHhccceEEEeec
Confidence            2       22668999999999986

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.70  E-value=6.7e-08  Score=93.99  Aligned_cols=86  Identities=17%  Similarity=0.149  Sum_probs=51.6

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCc---------------EEEEEEecCCch----
Q 006490          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGN---------------KKTLILQEIPEE----  483 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~---------------~~~~i~d~~g~~----  483 (643)
                      .+||.|||.||||||||+|++++........|.++..-.+-++.++..+               -.+.+.|.+|--    
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~   81 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS   81 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCcc
Confidence            4799999999999999999999887654444532221111123333110               134567888721    


Q ss_pred             hhhhh-hccHHhhccCCEEEEEEeCC
Q 006490          484 GVKKI-LSNKEALASCDVTIFVYDSS  508 (643)
Q Consensus       484 ~~~~~-~~~~~~~~~ad~illv~D~s  508 (643)
                      .=..+ .+-.+.+++||++++|+|+.
T Consensus        82 ~g~Glg~~FL~~ir~~d~LihVVr~f  107 (278)
T d1jala1          82 KGEGLGNKFLANIRETDAIGHVVRCF  107 (278)
T ss_dssp             HHGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred             cCCCccHHHHHHHHhccceEEEeecc
Confidence            11111 23467899999999999874

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.70  E-value=3.5e-08  Score=98.23  Aligned_cols=86  Identities=16%  Similarity=0.098  Sum_probs=45.5

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC-Cc-ccce--EEEEEEcC----------C--------CcEEEEEEecCC
Q 006490          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAP-TT-GEQY--AVNVVDQP----------G--------GNKKTLILQEIP  481 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~-t~-~~~~--~~~~v~~~----------g--------~~~~~~i~d~~g  481 (643)
                      ++|+|+|.||||||||+|+|++.+......| || ....  .....+..          .        ....+.++|++|
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG   80 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence            5899999999999999999999764433335 33 2211  11122211          0        113466788888


Q ss_pred             chh-----hhhhhccHHhhccCCEEEEEEeCCC
Q 006490          482 EEG-----VKKILSNKEALASCDVTIFVYDSSD  509 (643)
Q Consensus       482 ~~~-----~~~~~~~~~~~~~ad~illv~D~s~  509 (643)
                      --.     .....+....++.+|++++|+|+.+
T Consensus        81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~  113 (319)
T d1wxqa1          81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATG  113 (319)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTC
T ss_pred             cccchhcccchHHHHHHhhccceEEEEEecccc
Confidence            321     1112224566789999999999863

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.66  E-value=7.5e-09  Score=103.28  Aligned_cols=82  Identities=23%  Similarity=0.293  Sum_probs=44.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCC-CCCCCCCCCCC-----ee---------eCCcccC---------CceeEEEEeCCC
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATES-VPEKVPPVHAP-----TR---------LPPDFYP---------DRVPVTIIDTSS   68 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~~-~~~~~~~~~~~-----~~---------~~~~~~~---------~~~~~~i~Dt~G   68 (643)
                      +||+|||.||||||||||+|++.+ .+.++|-++-.     +.         ....+..         ....+.++|+||
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG   80 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence            589999999999999999999877 34456632211     10         0111111         235699999999


Q ss_pred             CCcchh----hhH---HhhccCCEEEEEEECCC
Q 006490           69 SLENKG----KLN---EELKRADAVVLTYACNQ   94 (643)
Q Consensus        69 ~~~~~~----~~~---~~~~~ad~il~v~d~~~   94 (643)
                      ......    ...   ..++.+|++++|+|+.+
T Consensus        81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~  113 (319)
T d1wxqa1          81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATG  113 (319)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTC
T ss_pred             cccchhcccchHHHHHHhhccceEEEEEecccc
Confidence            754221    111   34678999999999764

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.63  E-value=7.6e-08  Score=94.83  Aligned_cols=118  Identities=18%  Similarity=0.180  Sum_probs=73.8

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-CCcccceEEE--------------------------------------
Q 006490          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVN--------------------------------------  463 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~-~t~~~~~~~~--------------------------------------  463 (643)
                      ..+|+|+|..++|||||+|+|+|.++..... |+|+.-..+.                                      
T Consensus        26 ~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (299)
T d2akab1          26 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG  105 (299)
T ss_dssp             CCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCS
T ss_pred             CCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhhC
Confidence            3589999999999999999999988754443 4443211111                                      


Q ss_pred             ------------EEEcCCCcEEEEEEecCCchhh-------------hhhhccHHhhccCC-EEEEEEeCCChhhHHHHH
Q 006490          464 ------------VVDQPGGNKKTLILQEIPEEGV-------------KKILSNKEALASCD-VTIFVYDSSDEYSWKRTK  517 (643)
Q Consensus       464 ------------~v~~~g~~~~~~i~d~~g~~~~-------------~~~~~~~~~~~~ad-~illv~D~s~~~s~~~~~  517 (643)
                                  .+..+ ....+.++|++|....             ..+  ...++..++ ++++|.+++...+-....
T Consensus       106 ~~~~~~~~~i~l~~~~p-~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~--~~~y~~~~~~~il~v~~a~~~~~~~~~~  182 (299)
T d2akab1         106 TNKGISPVPINLRVYSP-HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDM--LMQFVTKENCLILAVSPANSDLANSDAL  182 (299)
T ss_dssp             STTCCCSCCEEEEEEET-TCCSEEEEECCCBCSSCCSSSCTTHHHHHHHH--HHHHHTSTTEEEEEEEESSSCGGGCHHH
T ss_pred             CCcCcCCccEEEEEcCC-CCCCeeEEccCCccccccCCcchhHHHHHHHH--HHHHhcCccceeeeecccccchhhhHHH
Confidence                        11111 1223567999984211             122  455666676 556677777655444445


Q ss_pred             HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcc
Q 006490          518 ELLVEVARLGEDSGYGVPCLLIASKDDLKPYT  549 (643)
Q Consensus       518 ~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~  549 (643)
                      .+...+...      +.++++|+||+|+..+.
T Consensus       183 ~~~~~~~~~------~~r~i~Vltk~D~~~~~  208 (299)
T d2akab1         183 KIAKEVDPQ------GQRTIGVITKLDLMDEG  208 (299)
T ss_dssp             HHHHHHCTT------CSSEEEEEECGGGSCTT
T ss_pred             HHHHHhCcC------CCceeeEEeccccccch
Confidence            555554332      67899999999988753

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.58  E-value=1.3e-07  Score=93.05  Aligned_cols=116  Identities=18%  Similarity=0.151  Sum_probs=72.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCCCCCeeeCCc-----------------cc------------------
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATESVPEK--VPPVHAPTRLPPD-----------------FY------------------   55 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~--~~~~~~~~~~~~~-----------------~~------------------   55 (643)
                      -+|+|+|..++|||||+|+|++..+.+.  .+.+...+.+...                 .+                  
T Consensus        27 P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (299)
T d2akab1          27 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGT  106 (299)
T ss_dssp             CEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCSS
T ss_pred             CeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhhCC
Confidence            4799999999999999999999886333  2222111111000                 00                  


Q ss_pred             ---------------CCceeEEEEeCCCCCcch-------------hhhHHhhccCC-EEEEEEECCCcccHHHHHHHHH
Q 006490           56 ---------------PDRVPVTIIDTSSSLENK-------------GKLNEELKRAD-AVVLTYACNQQSTLSRLSSYWL  106 (643)
Q Consensus        56 ---------------~~~~~~~i~Dt~G~~~~~-------------~~~~~~~~~ad-~il~v~d~~~~~s~~~~~~~~~  106 (643)
                                     .....+.++||||.....             .+...++..++ ++++|.+.....+..... .+.
T Consensus       107 ~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~-~~~  185 (299)
T d2akab1         107 NKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL-KIA  185 (299)
T ss_dssp             TTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH-HHH
T ss_pred             CcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHH-HHH
Confidence                           012347899999975321             22335666666 566677766555544443 366


Q ss_pred             HHHHhcCCCCcEEEEEecccCCCCC
Q 006490          107 PELRRLEIKVPIIVAGCKLDLRGDH  131 (643)
Q Consensus       107 ~~l~~~~~~~pvilv~NK~D~~~~~  131 (643)
                      +.+...  ..++++|.||+|.....
T Consensus       186 ~~~~~~--~~r~i~Vltk~D~~~~~  208 (299)
T d2akab1         186 KEVDPQ--GQRTIGVITKLDLMDEG  208 (299)
T ss_dssp             HHHCTT--CSSEEEEEECGGGSCTT
T ss_pred             HHhCcC--CCceeeEEeccccccch
Confidence            655444  57899999999987653

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.55  E-value=8.8e-08  Score=94.69  Aligned_cols=116  Identities=21%  Similarity=0.220  Sum_probs=69.2

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCCCCCeeeCCc-------------------------cc----------
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATESVPEK--VPPVHAPTRLPPD-------------------------FY----------   55 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~--~~~~~~~~~~~~~-------------------------~~----------   55 (643)
                      .+|+|||..++|||||+|+|++..+.+.  .+.+...+.+...                         .+          
T Consensus        25 P~ivVvG~~ssGKSSliNaLlG~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  104 (306)
T d1jwyb_          25 PQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEIIR  104 (306)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHHHH
T ss_pred             CeEEEEeCCCCCHHHHHHHHhCCCCCCCCCCccccCCEEEEEecCCcccCccchhhhhHHhhcCCceecCHHHHHHHHHH
Confidence            3799999999999999999999886433  2221111111000                         00          


Q ss_pred             -----------------------CCceeEEEEeCCCCCcch-------------hhhHHhhccCCEEEEEE-ECCCcccH
Q 006490           56 -----------------------PDRVPVTIIDTSSSLENK-------------GKLNEELKRADAVVLTY-ACNQQSTL   98 (643)
Q Consensus        56 -----------------------~~~~~~~i~Dt~G~~~~~-------------~~~~~~~~~ad~il~v~-d~~~~~s~   98 (643)
                                             .....+.|+||||.....             .....++..++.+++++ +.......
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~  184 (306)
T d1jwyb_         105 DTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLAN  184 (306)
T ss_dssp             HCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTT
T ss_pred             HHHHhcCCCCcccccceEEEecCCCCCCceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeecccccccc
Confidence                                   012357899999986321             33446788898766655 44433222


Q ss_pred             HHHHHHHHHHHHhcCCCCcEEEEEecccCCCCC
Q 006490           99 SRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH  131 (643)
Q Consensus        99 ~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~  131 (643)
                      .... .+.+.+...  ..++++|.||+|.....
T Consensus       185 ~~~~-~~~~~~~~~--~~r~i~Vitk~D~~~~~  214 (306)
T d1jwyb_         185 SDAL-QLAKEVDPE--GKRTIGVITKLDLMDKG  214 (306)
T ss_dssp             CSHH-HHHHHHCSS--CSSEEEEEECTTSSCSS
T ss_pred             cHHH-HHHHHhCcC--CCeEEEEEeccccccch
Confidence            2222 355555433  56899999999987543

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.54  E-value=1.2e-07  Score=93.77  Aligned_cols=118  Identities=16%  Similarity=0.165  Sum_probs=69.0

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-CCcccceEE---------------------------------------
Q 006490          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAV---------------------------------------  462 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~-~t~~~~~~~---------------------------------------  462 (643)
                      ..+|+|+|..++|||||+|+|+|.++..+.. |+|+.-..+                                       
T Consensus        24 lP~ivVvG~~ssGKSSliNaLlG~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  103 (306)
T d1jwyb_          24 LPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEII  103 (306)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHhCCCCCCCCCCccccCCEEEEEecCCcccCccchhhhhHHhhcCCceecCHHHHHHHHH
Confidence            3589999999999999999999988754443 333211111                                       


Q ss_pred             -------------------EEEEcCCCcEEEEEEecCCchhh-------------hhhhccHHhhccCCEEEEEE-eCCC
Q 006490          463 -------------------NVVDQPGGNKKTLILQEIPEEGV-------------KKILSNKEALASCDVTIFVY-DSSD  509 (643)
Q Consensus       463 -------------------~~v~~~g~~~~~~i~d~~g~~~~-------------~~~~~~~~~~~~ad~illv~-D~s~  509 (643)
                                         ..+..+ ....+.++|++|-...             ..+  ...++..++.+++++ ++..
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~--~~~yi~~~~~~il~v~~~~~  180 (306)
T d1jwyb_         104 RDTDRMTGKNKGISAQPINLKIYSP-HVVNLTLVDLPGITKVPVGDQPTDIEQQIRRM--VMAYIKKQNAIIVAVTPANT  180 (306)
T ss_dssp             HHCC--------CCCCCEEEEEEET-TSCSEEEEECCCCC---------CSHHHHHHH--HHHHHHSTTEEEEEEEESSS
T ss_pred             HHHHHhcCCCCcccccceEEEecCC-CCCCceEecCCCccccccCCcchhHHHHHHHH--HHHHHhCCCceeEEeecccc
Confidence                               111111 1223457999994221             122  566788899766654 5544


Q ss_pred             hhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcc
Q 006490          510 EYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT  549 (643)
Q Consensus       510 ~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~  549 (643)
                      ...-+....+...+...      +..+++|+||+|.....
T Consensus       181 ~~~~~~~~~~~~~~~~~------~~r~i~Vitk~D~~~~~  214 (306)
T d1jwyb_         181 DLANSDALQLAKEVDPE------GKRTIGVITKLDLMDKG  214 (306)
T ss_dssp             CSTTCSHHHHHHHHCSS------CSSEEEEEECTTSSCSS
T ss_pred             cccccHHHHHHHHhCcC------CCeEEEEEeccccccch
Confidence            33223334444444322      57899999999987643

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.18  E-value=6.5e-07  Score=86.50  Aligned_cols=58  Identities=22%  Similarity=0.298  Sum_probs=37.4

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCC--CCCCCCCCCCeeeCCcccCCceeEEEEeCCCCC
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATESV--PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSL   70 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~   70 (643)
                      ....++|+|+|.||||||||+|+|.+...  +.+.||   .|+-...+ ..+-.+.++||||.-
T Consensus       109 ~~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~pG---~Tr~~~~i-~~~~~~~l~DTPGi~  168 (273)
T d1puja_         109 KPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPG---ITTSQQWV-KVGKELELLDTPGIL  168 (273)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHHTSCCC---------------CCE-EETTTEEEEECCCCC
T ss_pred             CCCceEEEEEecCccchhhhhhhhhccceEEECCccc---ccccceEE-ECCCCeEEecCCCcc
Confidence            45678999999999999999999999874  333555   33311112 123459999999974

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.81  E-value=2.6e-05  Score=71.47  Aligned_cols=85  Identities=15%  Similarity=0.140  Sum_probs=61.4

Q ss_pred             hhccCCEEEEEEeCCCh-hhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhC-CCCcEEee
Q 006490          494 ALASCDVTIFVYDSSDE-YSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELG-IEPPIPVS  571 (643)
Q Consensus       494 ~~~~ad~illv~D~s~~-~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~vS  571 (643)
                      .+.+.|.+++|+.+.+| .+...+.+++-.....      ++|.++|+||+||.++... +....+...+. .-+++.+|
T Consensus         7 ~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~~------~i~pvIvlnK~DL~~~~~~-~~~~~~~~~~~~~~~v~~vS   79 (225)
T d1u0la2           7 HVANVDQVILVVTVKMPETSTYIIDKFLVLAEKN------ELETVMVINKMDLYDEDDL-RKVRELEEIYSGLYPIVKTS   79 (225)
T ss_dssp             TEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHT------TCEEEEEECCGGGCCHHHH-HHHHHHHHHHTTTSCEEECC
T ss_pred             CcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHc------CCCEEEEEeCcccCCHHHH-HHHHHhhcccccceeEEEec
Confidence            35678999999998875 4456667777666655      8999999999999874332 23333444333 23589999


Q ss_pred             eccC-CHHHHHHHHH
Q 006490          572 MKSK-DLNNVFSRII  585 (643)
Q Consensus       572 a~~g-~i~~l~~~l~  585 (643)
                      |+++ |++++.+.+.
T Consensus        80 a~~~~g~~~L~~~l~   94 (225)
T d1u0la2          80 AKTGMGIEELKEYLK   94 (225)
T ss_dssp             TTTCTTHHHHHHHHS
T ss_pred             cccchhHhhHHHHhc
Confidence            9999 9999888763

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.58  E-value=2.1e-05  Score=72.35  Aligned_cols=84  Identities=15%  Similarity=0.229  Sum_probs=62.1

Q ss_pred             hhccCCEEEEEEeCCCh-hhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHH---HHHhCCCCcEE
Q 006490          494 ALASCDVTIFVYDSSDE-YSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARV---TQELGIEPPIP  569 (643)
Q Consensus       494 ~~~~ad~illv~D~s~~-~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~---~~~~~~~~~~~  569 (643)
                      .+.+.|.+++|+++.+| .+...+.+++-.....      +++.+||+||+||..+....+....+   ....|++ ++.
T Consensus         7 ~vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~~------~i~pvIvlnK~DL~~~~~~~~~~~~~~~~y~~~g~~-v~~   79 (231)
T d1t9ha2           7 PICNVDQAVLVFSAVQPSFSTALLDRFLVLVEAN------DIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYD-VYL   79 (231)
T ss_dssp             TEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTT------TCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCC-EEE
T ss_pred             CccccCEEEEEEECCCCCCCHHHHHHHHHHHHHc------CCCEEEEEecccccccHHHHHHHHHHHHHHhhcccc-cee
Confidence            34688999999999876 4556677776665554      89999999999998754443334433   3455776 999


Q ss_pred             eeeccC-CHHHHHHHH
Q 006490          570 VSMKSK-DLNNVFSRI  584 (643)
Q Consensus       570 vSa~~g-~i~~l~~~l  584 (643)
                      +||+++ |++++.+.+
T Consensus        80 ~Sa~~~~gl~~L~~~l   95 (231)
T d1t9ha2          80 TSSKDQDSLADIIPHF   95 (231)
T ss_dssp             CCHHHHTTCTTTGGGG
T ss_pred             eecCChhHHHHHHHhh
Confidence            999999 988876654

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.31  E-value=0.00069  Score=62.29  Aligned_cols=98  Identities=9%  Similarity=0.026  Sum_probs=51.6

Q ss_pred             eeEEEEeCCCCCcchhhhHHh--------hccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCC
Q 006490           59 VPVTIIDTSSSLENKGKLNEE--------LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD  130 (643)
Q Consensus        59 ~~~~i~Dt~G~~~~~~~~~~~--------~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~  130 (643)
                      ....++.+.|...........        .-..+.++.|+|+............+..+++.     -=++|+||+|+..+
T Consensus        90 ~d~iiIE~sG~~~p~~l~~~~~~~~~~~~~~~l~~vi~vVDa~~~~~~~~~~~~~~~Qi~~-----AD~ivlNK~Dl~~~  164 (222)
T d1nija1          90 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGY-----ADRILLTKTDVAGE  164 (222)
T ss_dssp             CSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHHCHHHHHHHHT-----CSEEEEECTTTCSC
T ss_pred             cceeEEeecccchhhHHHHHHHhhhcccccccccchhhhhhhhhhhhhhhhhHHHHHHHHh-----CCcccccccccccH
Confidence            345788888876543333211        22358899999977654322211123333332     23688999999753


Q ss_pred             CccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHH
Q 006490          131 HNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (643)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  168 (643)
                      .      +.++.....+....+++++|- -...++.++
T Consensus       165 ~------~~~~~~l~~lNP~a~Ii~~~~-g~v~~~~ll  195 (222)
T d1nija1         165 A------EKLHERLARINARAPVYTVTH-GDIDLGLLF  195 (222)
T ss_dssp             T------HHHHHHHHHHCSSSCEEECCS-SCCCGGGGS
T ss_pred             H------HHHHHHHHHHhCCCeEEEeeC-CccCHHHhh
Confidence            1      223444455544345665542 223555443

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.26  E-value=0.0011  Score=60.89  Aligned_cols=22  Identities=41%  Similarity=0.510  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 006490          425 RCLLFGPQNAGKSALLNSFLER  446 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~  446 (643)
                      -.+|.|..|||||||+++++..
T Consensus         5 v~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           5 VTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHS
T ss_pred             EEEEeeCCCCCHHHHHHHHHhc
Confidence            4678899999999999999975

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=97.26  E-value=0.00062  Score=61.63  Aligned_cols=94  Identities=14%  Similarity=-0.012  Sum_probs=50.9

Q ss_pred             CceeEEEEeCCCCCcchh---hh---H--HhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCC
Q 006490           57 DRVPVTIIDTSSSLENKG---KL---N--EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLR  128 (643)
Q Consensus        57 ~~~~~~i~Dt~G~~~~~~---~~---~--~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~  128 (643)
                      .+..+.++||+|...+..   ..   .  ...-..+-+++|+|++.......   ......+..  + +-=++.+|.|..
T Consensus        93 ~~~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~---~~~~~~~~~--~-~~~lI~TKlDet  166 (211)
T d1j8yf2          93 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYD---LASKFNQAS--K-IGTIIITKMDGT  166 (211)
T ss_dssp             TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHH---HHHHHHHHC--T-TEEEEEECTTSC
T ss_pred             cCCceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcchHH---HHhhhhccc--C-cceEEEecccCC
Confidence            456899999999643321   11   1  11233578999999776543222   123333332  2 234679999986


Q ss_pred             CCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhH
Q 006490          129 GDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (643)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  166 (643)
                      ..     . -.+-.+....+  .|+..++  +|++|++
T Consensus       167 ~~-----~-G~~l~~~~~~~--lPi~~it--~Gq~v~D  194 (211)
T d1j8yf2         167 AK-----G-GGALSAVAATG--ATIKFIG--TGEKIDE  194 (211)
T ss_dssp             SC-----H-HHHHHHHHTTT--CCEEEEE--CSSSTTC
T ss_pred             Cc-----c-cHHHHHHHHHC--cCEEEEe--CCCCccc
Confidence            43     1 22233334443  2455554  5777765

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=97.24  E-value=0.00087  Score=60.73  Aligned_cols=144  Identities=16%  Similarity=0.099  Sum_probs=73.9

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcC----CCC--CCCCCCccc-------------ceEEEEEEcCC------------
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLER----PFS--ENYAPTTGE-------------QYAVNVVDQPG------------  469 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~----~~~--~~~~~t~~~-------------~~~~~~v~~~g------------  469 (643)
                      ..+.-|+++|++||||||.+=.|...    ...  .....|.+.             +..+.....+.            
T Consensus         9 ~~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~~~~~~~   88 (213)
T d1vmaa2           9 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAH   88 (213)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEeecccccchhHHHHHHhhhcCccccccCCCCcHHHHHHHHHHH
Confidence            44567899999999999987666532    111  000011111             22222221111            


Q ss_pred             ---CcEEEEEEecCCchhhhh-----hhccHHhhc-----cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcE
Q 006490          470 ---GNKKTLILQEIPEEGVKK-----ILSNKEALA-----SCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPC  536 (643)
Q Consensus       470 ---~~~~~~i~d~~g~~~~~~-----~~~~~~~~~-----~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pv  536 (643)
                         ....++++||+|......     +......+.     ..+-+++|+|++...  +............      + +-
T Consensus        89 ~~~~~~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~--~~~~~~~~~~~~~------~-~~  159 (213)
T d1vmaa2          89 ALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQ--NGLVQAKIFKEAV------N-VT  159 (213)
T ss_dssp             HHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHH--HHHHHHHHHHHHS------C-CC
T ss_pred             HHHcCCCEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccCc--chhhhhhhhcccc------C-Cc
Confidence               123467899999422221     111122222     157799999997652  2222332222222      2 22


Q ss_pred             EEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC-CHHH
Q 006490          537 LLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNN  579 (643)
Q Consensus       537 ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g-~i~~  579 (643)
                      =++++|.|....   .-.+-.+....+.+ +.+++  +| ++++
T Consensus       160 ~lI~TKlDe~~~---~G~~l~~~~~~~~P-i~~i~--~Gq~v~D  197 (213)
T d1vmaa2         160 GIILTKLDGTAK---GGITLAIARELGIP-IKFIG--VGEKAED  197 (213)
T ss_dssp             EEEEECGGGCSC---TTHHHHHHHHHCCC-EEEEE--CSSSGGG
T ss_pred             eEEEecccCCCc---ccHHHHHHHHHCCC-EEEEe--CCCCccc
Confidence            456799997542   22445566777776 66666  35 5543

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.17  E-value=0.0015  Score=58.93  Aligned_cols=142  Identities=14%  Similarity=0.078  Sum_probs=74.3

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCC----CC--CCCCCCccc-------------ceEEEEEEcCCC-------------
Q 006490          423 VFRCLLFGPQNAGKSALLNSFLERP----FS--ENYAPTTGE-------------QYAVNVVDQPGG-------------  470 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~~~~----~~--~~~~~t~~~-------------~~~~~~v~~~g~-------------  470 (643)
                      +.-|+++|++||||||.+-.|...-    ..  .....|.+.             +..+.....+..             
T Consensus         9 p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~d~~~~l~~~~~~a~   88 (211)
T d2qy9a2           9 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAK   88 (211)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTTCHHHHHHHHHHHHHTTCCEECCSTTCCHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccccccchhhhhhhhhhcCCcccccccCCCHHHHHHHHHHHHH
Confidence            4568899999999999988886321    10  000011111             222222222211             


Q ss_pred             --cEEEEEEecCCchhhh-----hhhccHHhhc-----cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEE
Q 006490          471 --NKKTLILQEIPEEGVK-----KILSNKEALA-----SCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLL  538 (643)
Q Consensus       471 --~~~~~i~d~~g~~~~~-----~~~~~~~~~~-----~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvil  538 (643)
                        ...++++||+|.....     .+.+....++     ..+-+++|+|++...  +............      + +--+
T Consensus        89 ~~~~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~--~~~~~~~~~~~~~------~-~~~l  159 (211)
T d2qy9a2          89 ARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQ--NAVSQAKLFHEAV------G-LTGI  159 (211)
T ss_dssp             HTTCSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTH--HHHHHHHHHHHHS------C-CCEE
T ss_pred             HcCCCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCc--chHHHHhhhhhcc------C-CceE
Confidence              1246789999943222     1211222232     256899999998652  2222222222221      2 2345


Q ss_pred             EEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC-CHHH
Q 006490          539 IASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNN  579 (643)
Q Consensus       539 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g-~i~~  579 (643)
                      +++|.|....   .-.+-.+....+.+ +.++|  +| ++++
T Consensus       160 IlTKlDe~~~---~G~~l~~~~~~~~P-i~~i~--~Gq~v~D  195 (211)
T d2qy9a2         160 TLTKLDGTAK---GGVIFSVADQFGIP-IRYIG--VGERIED  195 (211)
T ss_dssp             EEECCTTCTT---TTHHHHHHHHHCCC-EEEEE--CSSSGGG
T ss_pred             EEeecCCCCC---ccHHHHHHHHHCCC-EEEEe--CCCCccc
Confidence            6799997653   23445567777877 66666  44 5533

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=97.15  E-value=0.00067  Score=61.52  Aligned_cols=93  Identities=17%  Similarity=0.052  Sum_probs=49.9

Q ss_pred             ceeEEEEeCCCCCcchhhhH-------Hhhc-----cCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecc
Q 006490           58 RVPVTIIDTSSSLENKGKLN-------EELK-----RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKL  125 (643)
Q Consensus        58 ~~~~~i~Dt~G~~~~~~~~~-------~~~~-----~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~  125 (643)
                      ++.+.|+||+|........-       ..+.     ..+-+++|+|++..  .+.+. ......+..   -+-=++.+|.
T Consensus        93 ~~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~--~~~~~-~~~~~~~~~---~~~~lI~TKl  166 (213)
T d1vmaa2          93 NKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLV-QAKIFKEAV---NVTGIILTKL  166 (213)
T ss_dssp             TCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHH-HHHHHHHHS---CCCEEEEECG
T ss_pred             CCCEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccC--cchhh-hhhhhcccc---CCceEEEecc
Confidence            56799999999754332211       1111     14779999996543  33333 133333333   2345788999


Q ss_pred             cCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhH
Q 006490          126 DLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (643)
Q Consensus       126 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  166 (643)
                      |....-.      .+-.+....+  .|+..++  +|+++++
T Consensus       167 De~~~~G------~~l~~~~~~~--~Pi~~i~--~Gq~v~D  197 (213)
T d1vmaa2         167 DGTAKGG------ITLAIARELG--IPIKFIG--VGEKAED  197 (213)
T ss_dssp             GGCSCTT------HHHHHHHHHC--CCEEEEE--CSSSGGG
T ss_pred             cCCCccc------HHHHHHHHHC--CCEEEEe--CCCCccc
Confidence            9754322      1233333443  2455554  5777765

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.10  E-value=0.0012  Score=59.60  Aligned_cols=93  Identities=20%  Similarity=0.146  Sum_probs=50.2

Q ss_pred             ceeEEEEeCCCCCcchhh-hH------Hhhc-----cCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecc
Q 006490           58 RVPVTIIDTSSSLENKGK-LN------EELK-----RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKL  125 (643)
Q Consensus        58 ~~~~~i~Dt~G~~~~~~~-~~------~~~~-----~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~  125 (643)
                      ++.+.++||+|....... .+      ..++     ..+-+++|.|++..  .+.+. ......+..   -+-=++.+|.
T Consensus        91 ~~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~--~~~~~-~~~~~~~~~---~~~~lIlTKl  164 (211)
T d2qy9a2          91 NIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG--QNAVS-QAKLFHEAV---GLTGITLTKL  164 (211)
T ss_dssp             TCSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGT--HHHHH-HHHHHHHHS---CCCEEEEECC
T ss_pred             CCCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccC--cchHH-HHhhhhhcc---CCceEEEeec
Confidence            567899999996532211 11      2222     25689999996544  22222 133333332   2345688999


Q ss_pred             cCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhH
Q 006490          126 DLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (643)
Q Consensus       126 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  166 (643)
                      |....-.      .+-.+....+  .|+..++  .|++|++
T Consensus       165 De~~~~G------~~l~~~~~~~--~Pi~~i~--~Gq~v~D  195 (211)
T d2qy9a2         165 DGTAKGG------VIFSVADQFG--IPIRYIG--VGERIED  195 (211)
T ss_dssp             TTCTTTT------HHHHHHHHHC--CCEEEEE--CSSSGGG
T ss_pred             CCCCCcc------HHHHHHHHHC--CCEEEEe--CCCCccc
Confidence            9865322      2233334444  2455554  6777755

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=96.92  E-value=0.0029  Score=56.95  Aligned_cols=133  Identities=14%  Similarity=0.042  Sum_probs=71.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC------CCCCCCCCCccc-------------ceEEEEEEcCCC---------------c
Q 006490          426 CLLFGPQNAGKSALLNSFLER------PFSENYAPTTGE-------------QYAVNVVDQPGG---------------N  471 (643)
Q Consensus       426 i~ivG~~nvGKSSLln~l~~~------~~~~~~~~t~~~-------------~~~~~~v~~~g~---------------~  471 (643)
                      |+++|++||||||.+-.|...      +.......|.+.             +..+..+..+..               .
T Consensus        13 i~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (207)
T d1ls1a2          13 WFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEA   92 (207)
T ss_dssp             EEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccccchHHHHHHHHHHhcCCccccccccchhhHHHHHHHHHHhhcc
Confidence            688999999999998887632      111111011111             233333322211               2


Q ss_pred             EEEEEEecCCchhhhh--hh--ccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC
Q 006490          472 KKTLILQEIPEEGVKK--IL--SNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP  547 (643)
Q Consensus       472 ~~~~i~d~~g~~~~~~--~~--~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~  547 (643)
                      ...+++||+|......  +.  .........+-+++|.|++.+..   .........+..     +. -=++++|.|...
T Consensus        93 ~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~---~~~~~~~f~~~~-----~~-~~~I~TKlDe~~  163 (207)
T d1ls1a2          93 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQE---ALSVARAFDEKV-----GV-TGLVLTKLDGDA  163 (207)
T ss_dssp             CCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHH---HHHHHHHHHHHT-----CC-CEEEEECGGGCS
T ss_pred             CcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchh---HHHHHHHHHhhC-----CC-CeeEEeecCccc
Confidence            2567899999432221  11  12233457789999999987632   223333333321     21 135679999654


Q ss_pred             ccccHHHHHHHHHHhCCCCcEEee
Q 006490          548 YTMAVQDSARVTQELGIEPPIPVS  571 (643)
Q Consensus       548 ~~~~~~~~~~~~~~~~~~~~~~vS  571 (643)
                      .   .-.+-.++...+.+ +.+++
T Consensus       164 ~---~G~~l~~~~~~~~P-i~~i~  183 (207)
T d1ls1a2         164 R---GGAALSARHVTGKP-IYFAG  183 (207)
T ss_dssp             S---CHHHHHHHHHHCCC-EEEEC
T ss_pred             c---chHHHHHHHHHCCC-EEEEe
Confidence            3   23445667777876 65554

>d2scpa_ a.39.1.5 (A:) Sarcoplasmic calcium-binding protein {Sandworm (Nereis diversicolor) [TaxId: 126592]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Sarcoplasmic calcium-binding protein
species: Sandworm (Nereis diversicolor) [TaxId: 126592]

Probab=96.76  E-value=0.00058  Score=60.06  Aligned_cols=147  Identities=18%  Similarity=0.157  Sum_probs=93.0

Q ss_pred             HHHHHHhhhhhcCCCCCCCCChHHHHHHhhhhc-CCCCCHHHHHHHHHHHH----hhccCCcCCCCcChhhHHHHHHHHH
Q 006490          194 CVRALKRIFIICDHDMDGALNDAELNEFQVKCF-NAPLQPAEIVGVKRVVQ----EKQHDGVNDLGLTLSGFLFLHALFI  268 (643)
Q Consensus       194 ~~~~l~~~~~~~~~~~~~~l~~~el~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~f~~~~~~~~  268 (643)
                      -.+.++.+|...|.+.+|.++..|+.....+.. ...........+.....    ......-....++.+.|+......+
T Consensus         4 ~~~~l~~~F~~~D~d~dG~Is~~Ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~   83 (174)
T d2scpa_           4 WVQKMKTYFNRIDFDKDGAITRMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNFLTAVAGGKGIDETTFINSMKEMV   83 (174)
T ss_dssp             HHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHHHHHHTGGGTTTTSCEEHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHccCCCCcEeHHHHHHHHHHHhccccchhHHHHHhHHhhhhhccccccccCCCCcCcHHHHHHHHHhhh
Confidence            356788899999999999999999866554321 12222222333333222    2222233345688888887765433


Q ss_pred             HcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCChhHHhhhhccCCCC
Q 006490          269 EKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPES  348 (643)
Q Consensus       269 ~~~~~~~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~  348 (643)
                      ...                                     .....-..++..+|+.+|.|++|.|+.+|+..++....-.
T Consensus        84 ~~~-------------------------------------~~~~~~~~~~~~~F~~~D~d~dG~Is~~E~~~~l~~~~~~  126 (174)
T d2scpa_          84 KNP-------------------------------------EAKSVVEGPLPLFFRAVDTNEDNNISRDEYGIFFGMLGLD  126 (174)
T ss_dssp             SCG-------------------------------------GGTHHHHTHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCC
T ss_pred             cch-------------------------------------hhHHHHHHHHHHHHHHHCCCccccCCHHHHHHHHHHHhhh
Confidence            111                                     1123456688999999999999999999999988754221


Q ss_pred             CCCCCCCCCCccccCCcccchhhhhhhhh
Q 006490          349 PWDEAPYKDAAETTALGNLTLKGFVSKWA  377 (643)
Q Consensus       349 p~~~~~~~~~~~~~~~~~~~~~~~~~~w~  377 (643)
                      +-..........++..|.|+...|+..|.
T Consensus       127 ~~~~~~~f~~~D~d~dG~Is~~Ef~~~~~  155 (174)
T d2scpa_         127 KTMAPASFDAIDTNNDGLLSLEEFVIAGS  155 (174)
T ss_dssp             GGGHHHHHHHHCTTCSSEECHHHHHHHHH
T ss_pred             hHHHHHHHhhcCCCCCCcEeHHHHHHHHH
Confidence            11111222345678889999998888765

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=96.74  E-value=0.0012  Score=59.57  Aligned_cols=67  Identities=16%  Similarity=0.098  Sum_probs=38.2

Q ss_pred             ceeEEEEeCCCCCcchhh-hH------Hhh-----ccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecc
Q 006490           58 RVPVTIIDTSSSLENKGK-LN------EEL-----KRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKL  125 (643)
Q Consensus        58 ~~~~~i~Dt~G~~~~~~~-~~------~~~-----~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~  125 (643)
                      ++.+.++||+|....... .+      ...     ...+-+++|+|++....  .+. .........  + +-=++.+|.
T Consensus        88 ~~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~--~~~-~~~~~~~~~--~-~~~lI~TKl  161 (207)
T d1okkd2          88 GYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQN--GLE-QAKKFHEAV--G-LTGVIVTKL  161 (207)
T ss_dssp             TCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTH--HHH-HHHHHHHHH--C-CSEEEEECT
T ss_pred             CCCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCch--HHH-HHHHhhhcc--C-CceEEEecc
Confidence            567999999997543321 11      111     24578999999776542  222 122222222  2 224688999


Q ss_pred             cCCCC
Q 006490          126 DLRGD  130 (643)
Q Consensus       126 D~~~~  130 (643)
                      |....
T Consensus       162 Det~~  166 (207)
T d1okkd2         162 DGTAK  166 (207)
T ss_dssp             TSSCC
T ss_pred             CCCCC
Confidence            97654

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=96.74  E-value=0.0056  Score=55.09  Aligned_cols=144  Identities=13%  Similarity=0.022  Sum_probs=69.8

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCC----C--CCCCCCCccc-------------ceEEEEEEcCC------------
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERP----F--SENYAPTTGE-------------QYAVNVVDQPG------------  469 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~----~--~~~~~~t~~~-------------~~~~~~v~~~g------------  469 (643)
                      +.+.-|+++|++||||||.+=+|...-    .  ....-.|.+.             +..+.....+.            
T Consensus        10 k~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~ga~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~a~~~   89 (211)
T d1j8yf2          10 KIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK   89 (211)
T ss_dssp             SSSEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEECCCSSHHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEeeccccchhHHHHHhccccCcceeecccchhhhHHHHHHHHH
Confidence            345568899999999999877765321    1  0000011110             12222222211            


Q ss_pred             ---CcEEEEEEecCCchhhhh----hh--ccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEE
Q 006490          470 ---GNKKTLILQEIPEEGVKK----IL--SNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIA  540 (643)
Q Consensus       470 ---~~~~~~i~d~~g~~~~~~----~~--~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~  540 (643)
                         ....++++||+|...+..    +.  .........+-+++|+|++....  ............      +. --+++
T Consensus        90 ~~~~~~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~--~~~~~~~~~~~~------~~-~~lI~  160 (211)
T d1j8yf2          90 FLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK--AYDLASKFNQAS------KI-GTIII  160 (211)
T ss_dssp             HHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG--HHHHHHHHHHHC------TT-EEEEE
T ss_pred             hhccCCceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcc--hHHHHhhhhccc------Cc-ceEEE
Confidence               113567899999432211    11  11222345678999999986532  222222222211      22 23568


Q ss_pred             eCCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC-CHHH
Q 006490          541 SKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNN  579 (643)
Q Consensus       541 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g-~i~~  579 (643)
                      ||.|....   .-.+-.+....+++ +.++|  +| ++++
T Consensus       161 TKlDet~~---~G~~l~~~~~~~lP-i~~it--~Gq~v~D  194 (211)
T d1j8yf2         161 TKMDGTAK---GGGALSAVAATGAT-IKFIG--TGEKIDE  194 (211)
T ss_dssp             ECTTSCSC---HHHHHHHHHTTTCC-EEEEE--CSSSTTC
T ss_pred             ecccCCCc---ccHHHHHHHHHCcC-EEEEe--CCCCccc
Confidence            99997653   33444556667776 66665  35 5543

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.69  E-value=9e-05  Score=67.77  Aligned_cols=44  Identities=7%  Similarity=-0.056  Sum_probs=28.3

Q ss_pred             hccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccC
Q 006490           80 LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDL  127 (643)
Q Consensus        80 ~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~  127 (643)
                      +...++.++++|.+++.....  ..+...++..  +.+++++.++++.
T Consensus        81 ~~~~~~~~vi~d~~~~~~~~r--~~~~~~~~~~--~~~~~~~~~~~~~  124 (213)
T d1bifa1          81 LSEEGGHVAVFDATNTTRERR--AMIFNFGEQN--GYKTFFVESICVD  124 (213)
T ss_dssp             HHTTCCSEEEEESCCCSHHHH--HHHHHHHHHH--TCEEEEEEECCCC
T ss_pred             HHhcCCCEEEeecCCccHHHH--HHHHHHHHhc--CCeEEEEEeeccH
Confidence            344566778899877644333  2355555656  6788888888863

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.65  E-value=0.00039  Score=61.33  Aligned_cols=23  Identities=22%  Similarity=0.686  Sum_probs=21.0

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcC
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATE   35 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~   35 (643)
                      +||+|+|++|+|||||++.+++.
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~~   23 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHhc
Confidence            58999999999999999999863

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=96.65  E-value=0.0059  Score=54.77  Aligned_cols=85  Identities=15%  Similarity=0.100  Sum_probs=46.3

Q ss_pred             EEEEEecCCchhhh-----hhhccHHhh-----ccCCEEEEEEeCCChh-hHHHHHHHHHHHHHhcCCCCCCCcEEEEEe
Q 006490          473 KTLILQEIPEEGVK-----KILSNKEAL-----ASCDVTIFVYDSSDEY-SWKRTKELLVEVARLGEDSGYGVPCLLIAS  541 (643)
Q Consensus       473 ~~~i~d~~g~~~~~-----~~~~~~~~~-----~~ad~illv~D~s~~~-s~~~~~~~~~~i~~~~~~~~~~~pvilv~N  541 (643)
                      .++++||+|.....     .+.+....+     ...+-+++|+|++... ....+......   .      +.. -++++
T Consensus        90 d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~---~------~~~-~lI~T  159 (207)
T d1okkd2          90 DLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEA---V------GLT-GVIVT  159 (207)
T ss_dssp             SEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHH---H------CCS-EEEEE
T ss_pred             CEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHHhhhc---c------CCc-eEEEe
Confidence            56789999943221     111111222     2457889999998653 22222222222   2      222 44679


Q ss_pred             CCCCCCccccHHHHHHHHHHhCCCCcEEee
Q 006490          542 KDDLKPYTMAVQDSARVTQELGIEPPIPVS  571 (643)
Q Consensus       542 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~vS  571 (643)
                      |.|....   .-.+-.+....+.+ +.++|
T Consensus       160 KlDet~~---~G~~l~~~~~~~~P-i~~i~  185 (207)
T d1okkd2         160 KLDGTAK---GGVLIPIVRTLKVP-IKFVG  185 (207)
T ss_dssp             CTTSSCC---CTTHHHHHHHHCCC-EEEEE
T ss_pred             ccCCCCC---ccHHHHHHHHHCCC-EEEEe
Confidence            9997653   22344567777876 66666

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.64  E-value=0.00022  Score=65.01  Aligned_cols=86  Identities=13%  Similarity=0.121  Sum_probs=46.5

Q ss_pred             hhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeec
Q 006490          494 ALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMK  573 (643)
Q Consensus       494 ~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~  573 (643)
                      .+...++.++++|++.+..  ..+.++.++....     +.+++++.++++...      ..+.-...........+++.
T Consensus        80 ~~~~~~~~~vi~d~~~~~~--~~r~~~~~~~~~~-----~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~  146 (213)
T d1bifa1          80 FLSEEGGHVAVFDATNTTR--ERRAMIFNFGEQN-----GYKTFFVESICVDPE------VIAANIVQVKLGSPDYVNRD  146 (213)
T ss_dssp             HHHTTCCSEEEEESCCCSH--HHHHHHHHHHHHH-----TCEEEEEEECCCCHH------HHHHHHHHHTTTSTTTTTSC
T ss_pred             HHHhcCCCEEEeecCCccH--HHHHHHHHHHHhc-----CCeEEEEEeeccHHH------HHHHhHHHHhcCCCcccccc
Confidence            3445566678889987632  2333334433322     678888888876321      22222222332223346666


Q ss_pred             cC-CHHHHHHHHHHHHhCCC
Q 006490          574 SK-DLNNVFSRIIWAAEHPH  592 (643)
Q Consensus       574 ~g-~i~~l~~~l~~~~~~~~  592 (643)
                      .. ++..+.+.+......+.
T Consensus       147 ~~~~~~~~~~~l~~~~~~~e  166 (213)
T d1bifa1         147 SDEATEDFMRRIECYENSYE  166 (213)
T ss_dssp             HHHHHHHHHHHHHHHHTTCC
T ss_pred             hHHHHHHHHHhhhhcccccc
Confidence            65 67777777666555433

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=96.60  E-value=0.00058  Score=61.75  Aligned_cols=67  Identities=15%  Similarity=0.132  Sum_probs=38.0

Q ss_pred             CceeEEEEeCCCCCcchhh-hH-----HhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCC
Q 006490           57 DRVPVTIIDTSSSLENKGK-LN-----EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRG  129 (643)
Q Consensus        57 ~~~~~~i~Dt~G~~~~~~~-~~-----~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~  129 (643)
                      .++.+.++||+|....... ..     ......+-+++|.|.+......+..   ....+..  + +-=++.+|.|...
T Consensus        91 ~~~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~~---~~f~~~~--~-~~~~I~TKlDe~~  163 (207)
T d1ls1a2          91 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVA---RAFDEKV--G-VTGLVLTKLDGDA  163 (207)
T ss_dssp             HTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHH---HHHHHHT--C-CCEEEEECGGGCS
T ss_pred             ccCcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHHHH---HHHHhhC--C-CCeeEEeecCccc
Confidence            3567899999997643221 11     2234568999999976553322221   1111222  1 2237889999654

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.54  E-value=0.00047  Score=60.80  Aligned_cols=23  Identities=26%  Similarity=0.619  Sum_probs=21.3

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 006490          424 FRCLLFGPQNAGKSALLNSFLER  446 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~  446 (643)
                      +||+|+|++|+|||||++.+++.
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~~   23 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHhc
Confidence            58999999999999999999974

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=96.34  E-value=0.0011  Score=58.02  Aligned_cols=27  Identities=33%  Similarity=0.652  Sum_probs=24.0

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcC
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATE   35 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~   35 (643)
                      .++.++|+|.|+|||||||+.+.|...
T Consensus         2 ~pk~~~I~i~G~~GsGKTT~~~~La~~   28 (174)
T d1y63a_           2 QPKGINILITGTPGTGKTSMAEMIAAE   28 (174)
T ss_dssp             CCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence            467789999999999999999999764

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=96.19  E-value=0.0013  Score=58.73  Aligned_cols=26  Identities=35%  Similarity=0.572  Sum_probs=23.0

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcC
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATE   35 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~   35 (643)
                      ++.+||+|+|+|||||||+...|...
T Consensus         1 p~~~riil~G~pGSGKsT~a~~La~~   26 (190)
T d1ak2a1           1 PKGVRAVLLGPPGAGKGTQAPKLAKN   26 (190)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHHH
Confidence            46789999999999999999998753

>d2sasa_ a.39.1.5 (A:) Sarcoplasmic calcium-binding protein {Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Sarcoplasmic calcium-binding protein
species: Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]

Probab=96.19  E-value=0.012  Score=51.59  Aligned_cols=150  Identities=14%  Similarity=0.178  Sum_probs=92.8

Q ss_pred             HHHHHHhhhhh-cCCCCCCCCChHHHHHHhhhh---cCCCCCHHHHHHHHHHHHhhcc------CCcCCCCcChhhHHHH
Q 006490          194 CVRALKRIFII-CDHDMDGALNDAELNEFQVKC---FNAPLQPAEIVGVKRVVQEKQH------DGVNDLGLTLSGFLFL  263 (643)
Q Consensus       194 ~~~~l~~~~~~-~~~~~~~~l~~~el~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~f~~~  263 (643)
                      -.+-++++|.. .|.+++|.++..|+..+..+.   ............+.........      ..-.+..++.+.|+..
T Consensus         6 q~~~i~~~F~~~~D~d~dG~Is~~Ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~~~~~~   85 (185)
T d2sasa_           6 QKQKIKFTFDFFLDMNHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDEWRDLKGRADINKDDVVSWEEYLAM   85 (185)
T ss_dssp             HHHHHHHHHHHHTCTTCSSEECHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHHCTTCSSCEEHHHHHHH
T ss_pred             HHHHHHHHHHHhhcCCCCCcCCHHHHHHHHHHhccccCCCcccHHHHHHHHHHHHHHHHHHHHhCcCCCCcEeeeHhhHH
Confidence            44557788874 699999999999987655432   2223333333333333322211      1123445888888877


Q ss_pred             HHHHHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCChhHHhhhhc
Q 006490          264 HALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFL  343 (643)
Q Consensus       264 ~~~~~~~~~~~~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~~~  343 (643)
                      ..........                                 ...+...-..++..+|+.+|.|++|.|+..|+..++.
T Consensus        86 ~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~F~~~D~d~~G~Is~~E~~~~l~  132 (185)
T d2sasa_          86 WEKTIATCKS---------------------------------VADLPAWCQNRIPFLFKGMDVSGDGIVDLEEFQNYCK  132 (185)
T ss_dssp             HHHHHHTCCS---------------------------------GGGSCTTHHHHHHHHHHHHCTTSSSCCCHHHHHHHTT
T ss_pred             HHHHhhhhhh---------------------------------hhhhhHHHHHHHHHHHHHHccCCCccCCHHHHHHHHH
Confidence            6644432211                                 0112233456788999999999999999999999987


Q ss_pred             cCCCCC-CCCCCCCCCccccCCcccchhhhhhhhh
Q 006490          344 TAPESP-WDEAPYKDAAETTALGNLTLKGFVSKWA  377 (643)
Q Consensus       344 ~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~w~  377 (643)
                      ... .+ -...........+.+|.|+...|...|.
T Consensus       133 ~~~-l~~~~~~~~f~~~D~d~dG~i~~~EF~~~~~  166 (185)
T d2sasa_         133 NFQ-LQCADVPAVYNVITDGGKVTFDLNRYKELYY  166 (185)
T ss_dssp             SSC-CCCSSHHHHHHHHHTTTTSCCSHHHHHHHHH
T ss_pred             HcC-CCHHHHHHHHHHcCCCCCCCCcHHHHHHHHH
Confidence            542 22 1112222345678899999998887764

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=96.14  E-value=0.00099  Score=58.86  Aligned_cols=22  Identities=32%  Similarity=0.524  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 006490           14 RVVVVGDRGTGKSSLIAAAATE   35 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~~   35 (643)
                      +|+|.|+||||||||+++|...
T Consensus         9 ~I~i~G~~GsGKTTla~~La~~   30 (192)
T d1lw7a2           9 TVAILGGESSGKSVLVNKLAAV   30 (192)
T ss_dssp             EEEEECCTTSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999999864

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.13  E-value=0.0032  Score=59.57  Aligned_cols=60  Identities=25%  Similarity=0.173  Sum_probs=39.3

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCCCCee-----eCCcccCCceeEEEEeCCCCCc
Q 006490           12 GVRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTR-----LPPDFYPDRVPVTIIDTSSSLE   71 (643)
Q Consensus        12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~~-~~~~~~~~~-----~~~~~~~~~~~~~i~Dt~G~~~   71 (643)
                      -.-|+|+|+.++|||+|+|.|++..+.-. .++....|.     ........+..+.++||.|...
T Consensus        32 v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~~~   97 (277)
T d1f5na2          32 MVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD   97 (277)
T ss_dssp             EEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred             EEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEecccccc
Confidence            34688999999999999999998774222 222111221     1111234567899999999754

>d1exra_ a.39.1.5 (A:) Calmodulin {Ciliate (Paramecium tetraurelia) [TaxId: 5888]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Ciliate (Paramecium tetraurelia) [TaxId: 5888]

Probab=96.11  E-value=0.0061  Score=51.35  Aligned_cols=138  Identities=22%  Similarity=0.304  Sum_probs=90.5

Q ss_pred             chHHHHHHHHhhhhhcCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhccCCcCCCCcChhhHHHHHHHHHH
Q 006490          190 LKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIE  269 (643)
Q Consensus       190 ~~~~~~~~l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~  269 (643)
                      ++++....|+.+|...|.+.+|.++..++..+... .+..+....+..+...+..     -....++++.|+........
T Consensus         3 lt~~e~~~l~~~F~~~D~~~~G~Is~~e~~~~l~~-~~~~~~~~~~~~~~~~~d~-----~~~g~i~~~ef~~~~~~~~~   76 (146)
T d1exra_           3 LTEEQIAEFKEAFALFDKDGDGTITTKELGTVMRS-LGQNPTEAELQDMINEVDA-----DGNGTIDFPEFLSLMARKMK   76 (146)
T ss_dssp             CCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHH-HTCCCCHHHHHHHHHHHCT-----TCSSSEEHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHcCCCCCeECHHHHHHHHHh-cCCCCCHHHHHHHHHhcCC-----CCCCcccHHHHHHHHHHHhh
Confidence            44556677999999999999999999999776654 4556666666665555421     12335888888876542220


Q ss_pred             cCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCChhHHhhhhccCCCCC
Q 006490          270 KGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESP  349 (643)
Q Consensus       270 ~~~~~~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~p  349 (643)
                                                               ...-..-++.+|+.+|.|++|.++..|+..++......+
T Consensus        77 -----------------------------------------~~~~~~~~~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~  115 (146)
T d1exra_          77 -----------------------------------------EQDSEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKL  115 (146)
T ss_dssp             -----------------------------------------HHHHHHHHHHHHHHHSTTCSSCBCHHHHHHHHHHTTCCC
T ss_pred             -----------------------------------------ccChHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHHhhcC
Confidence                                                     011234678899999999999999999999988653222


Q ss_pred             CC--CCCCCCCccccCCcccchhhhhh
Q 006490          350 WD--EAPYKDAAETTALGNLTLKGFVS  374 (643)
Q Consensus       350 ~~--~~~~~~~~~~~~~~~~~~~~~~~  374 (643)
                      -.  ...+......+.+|.|+...|++
T Consensus       116 ~~~~~~~i~~~~D~d~dG~i~~~eF~~  142 (146)
T d1exra_         116 TDDEVDEMIREADIDGDGHINYEEFVR  142 (146)
T ss_dssp             CHHHHHHHHHHHCSSSSSSBCHHHHHH
T ss_pred             CHHHHHHHHHHhCCCCCCeEeHHHHHH
Confidence            11  11111223446677777776654

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=96.05  E-value=0.0015  Score=56.86  Aligned_cols=24  Identities=25%  Similarity=0.403  Sum_probs=21.2

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcC
Q 006490           12 GVRVVVVGDRGTGKSSLIAAAATE   35 (643)
Q Consensus        12 ~~kI~lvG~~~vGKSsL~n~l~~~   35 (643)
                      ..+|+|+|+|||||||+.++|...
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~~   27 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELASK   27 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            467999999999999999999754

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=95.79  E-value=0.002  Score=55.93  Aligned_cols=21  Identities=24%  Similarity=0.335  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 006490           14 RVVVVGDRGTGKSSLIAAAAT   34 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~   34 (643)
                      -|+|+|.+|||||||+++|+.
T Consensus         4 vi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            389999999999999999985

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=95.79  E-value=0.0019  Score=56.97  Aligned_cols=23  Identities=26%  Similarity=0.427  Sum_probs=20.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 006490          424 FRCLLFGPQNAGKSALLNSFLER  446 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~  446 (643)
                      -+|+|.|+||||||||+++|...
T Consensus         8 K~I~i~G~~GsGKTTla~~La~~   30 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAAV   30 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999864

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=95.78  E-value=0.0024  Score=55.70  Aligned_cols=26  Identities=15%  Similarity=0.291  Sum_probs=23.1

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcC
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLER  446 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~  446 (643)
                      +.+++|+|.|+|||||||+.+.|...
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~   28 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAE   28 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence            45689999999999999999999764

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.75  E-value=0.0024  Score=56.31  Aligned_cols=23  Identities=22%  Similarity=0.410  Sum_probs=20.5

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcC
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATE   35 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~   35 (643)
                      +||+|+|+||+||||+...|...
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVAA   23 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999988654

>d1wdcb_ a.39.1.5 (B:) Myosin Essential Chain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Myosin Essential Chain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=95.72  E-value=0.031  Score=46.64  Aligned_cols=103  Identities=17%  Similarity=0.289  Sum_probs=75.8

Q ss_pred             HHHHHHHHhhhhhcCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhccCCcCCCCcChhhHHHHHHHHHHcC
Q 006490          192 PRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKG  271 (643)
Q Consensus       192 ~~~~~~l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~  271 (643)
                      ++..+.++.+|...|.+.++.++..++..... .++...+..++..+..   .      .+..++++.|+.+.....   
T Consensus         3 ~~qi~e~~~~F~~~D~d~~G~I~~~el~~~l~-~lg~~~~~~el~~~~~---~------~~~~i~~~eF~~~~~~~~---   69 (142)
T d1wdcb_           3 QKQIQEMKEAFSMIDVDRDGFVSKEDIKAISE-QLGRAPDDKELTAMLK---E------APGPLNFTMFLSIFSDKL---   69 (142)
T ss_dssp             HHHHHHHHHHHHHHCTTCSSSCCHHHHHHHHH-HHSSCCCHHHHHHHHT---T------SSSCCCHHHHHHHHHHHT---
T ss_pred             HHHHHHHHHHHHHHcCCCCCcCChHHHHHHHH-HhhcCCCHHHHHHHHH---h------ccCccccccccccccccc---
Confidence            45567788899999999999999999976553 4567777777665542   1      134599999988754211   


Q ss_pred             CccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCChhHHhhhhccC
Q 006490          272 RLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTA  345 (643)
Q Consensus       272 ~~~~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~~~~~  345 (643)
                      ..                                      .....-++.+|+.||.|++|.++..|+..++...
T Consensus        70 ~~--------------------------------------~~~~~~l~~aF~~~D~d~~G~I~~~el~~~l~~~  105 (142)
T d1wdcb_          70 SG--------------------------------------TDSEETIRNAFAMFDEQETKKLNIEYIKDLLENM  105 (142)
T ss_dssp             CS--------------------------------------CCCHHHHHHHHHTTCTTCCSCEEHHHHHHHHHHS
T ss_pred             cc--------------------------------------cchhhhHHHhhhhhcccCCCcccHHHHHHHHHHc
Confidence            11                                      0013457789999999999999999999998765

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=95.71  E-value=0.0032  Score=56.02  Aligned_cols=26  Identities=19%  Similarity=0.414  Sum_probs=22.9

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcC
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATE   35 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~   35 (643)
                      .+.++|+|+|+|||||||+...|...
T Consensus         4 ~r~mrIiliG~PGSGKtT~a~~La~~   29 (189)
T d2ak3a1           4 ARLLRAAIMGAPGSGKGTVSSRITKH   29 (189)
T ss_dssp             SCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcceeEEEECCCCCCHHHHHHHHHHH
Confidence            45578999999999999999999874

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=95.63  E-value=0.0025  Score=56.74  Aligned_cols=25  Identities=20%  Similarity=0.371  Sum_probs=21.7

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcC
Q 006490           11 TGVRVVVVGDRGTGKSSLIAAAATE   35 (643)
Q Consensus        11 ~~~kI~lvG~~~vGKSsL~n~l~~~   35 (643)
                      +.++|+|+|+|||||||+++.|...
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~~   26 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKTK   26 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3568999999999999999988654

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=95.61  E-value=0.0029  Score=55.90  Aligned_cols=23  Identities=22%  Similarity=0.429  Sum_probs=20.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcC
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATE   35 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~   35 (643)
                      ++|+|+|+|||||||++..|...
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVEK   23 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999988864

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=95.59  E-value=0.0025  Score=55.22  Aligned_cols=21  Identities=19%  Similarity=0.265  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 006490          425 RCLLFGPQNAGKSALLNSFLE  445 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~  445 (643)
                      -++|+|.+|||||||+++|+.
T Consensus         4 vi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            489999999999999999985

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=95.56  E-value=0.0024  Score=55.51  Aligned_cols=23  Identities=26%  Similarity=0.355  Sum_probs=20.6

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 006490          424 FRCLLFGPQNAGKSALLNSFLER  446 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~  446 (643)
                      ++|+|+|+|||||||+.++|...
T Consensus         5 ~~I~i~G~pGsGKTTia~~La~~   27 (173)
T d1rkba_           5 PNILLTGTPGVGKTTLGKELASK   27 (173)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999999753

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.55  E-value=0.0032  Score=55.52  Aligned_cols=23  Identities=30%  Similarity=0.560  Sum_probs=20.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcC
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATE   35 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~   35 (643)
                      ++|+|+|+|||||||+...|...
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~~   23 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAEK   23 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999998754

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.53  E-value=0.002  Score=56.82  Aligned_cols=21  Identities=24%  Similarity=0.539  Sum_probs=19.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 006490           15 VVVVGDRGTGKSSLIAAAATE   35 (643)
Q Consensus        15 I~lvG~~~vGKSsL~n~l~~~   35 (643)
                      |+|+|++||||+||+++|+..
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            899999999999999999864

>d1ctda_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.50  E-value=0.0042  Score=35.70  Aligned_cols=28  Identities=29%  Similarity=0.507  Sum_probs=24.9

Q ss_pred             HHHHHhhhhhcCCCCCCCChhHHhhhhc
Q 006490          316 EFLRGIFGLYDIDNDGAVRPAELEDLFL  343 (643)
Q Consensus       316 ~f~~~~f~~~~~~~~~~l~~~~~~~~~~  343 (643)
                      .=|.++|..||+|.||.++-+|+.+++.
T Consensus         4 eELae~FRifDkNaDGyiD~eEl~~ilr   31 (34)
T d1ctda_           4 EELANAFRIFDKNADGYIDIEELGEILR   31 (34)
T ss_dssp             HHHHHHHHTTCCSSSSCBCHHHHHHHHH
T ss_pred             HHHHHHHHHHccCCcccccHHHHHHHHH
Confidence            3478899999999999999999988874

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=95.46  E-value=0.0033  Score=53.39  Aligned_cols=21  Identities=24%  Similarity=0.457  Sum_probs=18.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 006490           15 VVVVGDRGTGKSSLIAAAATE   35 (643)
Q Consensus        15 I~lvG~~~vGKSsL~n~l~~~   35 (643)
                      |+|.|.||||||||+++|...
T Consensus         5 Iii~G~pGsGKTTla~~L~~~   25 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIAK   25 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            788999999999999998754

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.37  E-value=0.0043  Score=54.63  Aligned_cols=24  Identities=25%  Similarity=0.536  Sum_probs=21.6

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcC
Q 006490           12 GVRVVVVGDRGTGKSSLIAAAATE   35 (643)
Q Consensus        12 ~~kI~lvG~~~vGKSsL~n~l~~~   35 (643)
                      .+||+|+|+|||||||+...|...
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~~   25 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQER   25 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            478999999999999999999764

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.36  E-value=0.0026  Score=57.41  Aligned_cols=23  Identities=39%  Similarity=0.453  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 006490           14 RVVVVGDRGTGKSSLIAAAATES   36 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~~~   36 (643)
                      =|+|+|++|||||||+++|+...
T Consensus         4 livi~GPSG~GK~tl~~~L~~~~   26 (205)
T d1s96a_           4 LYIVSAPSGAGKSSLIQALLKTQ   26 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            48899999999999999998753

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.35  E-value=0.0038  Score=54.83  Aligned_cols=23  Identities=17%  Similarity=0.367  Sum_probs=20.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcC
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATE   35 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~   35 (643)
                      +||+|+|+||+||||..+.|...
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~~   23 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIMEK   23 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999988754

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=95.27  E-value=0.0044  Score=55.06  Aligned_cols=24  Identities=29%  Similarity=0.509  Sum_probs=21.7

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhc
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLE  445 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~  445 (643)
                      .++||+|+|+|||||||+...|..
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHH
Confidence            467999999999999999999875

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.24  E-value=0.022  Score=53.56  Aligned_cols=62  Identities=15%  Similarity=0.128  Sum_probs=39.7

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC---CcccceEEEEEEcC-CCcEEEEEEecCCch
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAP---TTGEQYAVNVVDQP-GGNKKTLILQEIPEE  483 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~---t~~~~~~~~~v~~~-g~~~~~~i~d~~g~~  483 (643)
                      ...-|+|+|+.++|||+|+|.|++....-...+   ..+.+......... +....++++||-|..
T Consensus        31 ~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~~   96 (277)
T d1f5na2          31 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG   96 (277)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred             CEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEeccccc
Confidence            456799999999999999999998764322111   12223333333332 345567889998853

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.24  E-value=0.0026  Score=56.44  Aligned_cols=22  Identities=41%  Similarity=0.632  Sum_probs=20.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Q 006490           15 VVVVGDRGTGKSSLIAAAATES   36 (643)
Q Consensus        15 I~lvG~~~vGKSsL~n~l~~~~   36 (643)
                      |+|+|++|||||||+++|+...
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~   25 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            8999999999999999998753

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=95.23  E-value=0.0056  Score=54.48  Aligned_cols=23  Identities=30%  Similarity=0.455  Sum_probs=20.5

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcC
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATE   35 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~   35 (643)
                      ..|+|+|+||+||||++++|...
T Consensus         7 ~iI~i~G~pGSGKsT~a~~La~~   29 (194)
T d1qf9a_           7 NVVFVLGGPGSGKGTQCANIVRD   29 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            56899999999999999999764

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=95.21  E-value=0.0035  Score=55.66  Aligned_cols=25  Identities=12%  Similarity=0.314  Sum_probs=21.9

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcC
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLER  446 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~  446 (643)
                      .+++|+|+|+|||||||+...|...
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~~   26 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKTK   26 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4678999999999999999988653

>d1topa_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.18  E-value=0.014  Score=49.93  Aligned_cols=141  Identities=18%  Similarity=0.281  Sum_probs=89.3

Q ss_pred             chHHHHHHHHhhhhhcCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhccCCcCCCCcChhhHHHHHHHHHH
Q 006490          190 LKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIE  269 (643)
Q Consensus       190 ~~~~~~~~l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~  269 (643)
                      +.++....|+.+|...|.+++|.++..|+..... ..+.......+..+...+...     ....++...|+........
T Consensus        14 ls~~~i~el~~~F~~~D~d~~G~Is~~el~~~l~-~~~~~~~~~~~~~~~~~~d~~-----~~~~~~~~e~~~~~~~~~~   87 (162)
T d1topa_          14 LSEEMIAEFKAAFDMFDADGGGDISTKELGTVMR-MLGQNPTKEELDAIIEEVDED-----GSGTIDFEEFLVMMVRQMK   87 (162)
T ss_dssp             SCHHHHHHHHHHHHTTTCSCSSEEEGGGHHHHHH-HTTCCCCHHHHHHHHHHHCTT-----SCCEEEHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHcCCCCCeEcHHHHHHHHh-ccCCchhHHHHHhhhheeccC-----CCCCeeeehhhhhhhhhhh
Confidence            4556667799999999999999999999976444 466677777777666554322     1223555555444332211


Q ss_pred             cCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCChhHHhhhhccCCCCC
Q 006490          270 KGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESP  349 (643)
Q Consensus       270 ~~~~~~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~p  349 (643)
                      ...                                      .......+++.|+.||.|++|.++..|+..++..... +
T Consensus        88 ~~~--------------------------------------~~~~~~~~~~aF~~~D~d~~G~Is~~e~~~~l~~~~~-~  128 (162)
T d1topa_          88 EDA--------------------------------------KGKSEEELANCFRIFDKNADGFIDIEELGEILRATGE-H  128 (162)
T ss_dssp             HHH--------------------------------------HHHHHHHHHHHHHHHCTTCSSCBCHHHHHHHHHTTTC-C
T ss_pred             hhc--------------------------------------ccCcHHHHHHHHHHHCCCCCCCCcHHHHHHHHHhhCC-C
Confidence            000                                      1122345677899999999999999999988876422 2


Q ss_pred             CCC---CCCCCCccccCCcccchhhhhhh
Q 006490          350 WDE---APYKDAAETTALGNLTLKGFVSK  375 (643)
Q Consensus       350 ~~~---~~~~~~~~~~~~~~~~~~~~~~~  375 (643)
                      ...   ..+......+.+|.|+...|+..
T Consensus       129 ~~~~~~~~l~~~~D~d~dG~Is~~EF~~~  157 (162)
T d1topa_         129 VTEEDIEDLMKDSDKNNDGRIDFDEFLKM  157 (162)
T ss_dssp             CCHHHHHHHHHHHCTTCSSSBCHHHHHHH
T ss_pred             CCHHHHHHHHHHhCCCCCCcEEHHHHHHH
Confidence            111   11122344577788888777643

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.16  E-value=0.0078  Score=52.47  Aligned_cols=26  Identities=38%  Similarity=0.415  Sum_probs=21.9

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhc
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAAT   34 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~   34 (643)
                      .++..-|+++|.|||||||++.++..
T Consensus        11 ~~~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          11 SPNPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             CSSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            34456799999999999999999865

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=95.16  E-value=0.0046  Score=53.56  Aligned_cols=21  Identities=29%  Similarity=0.487  Sum_probs=19.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 006490           15 VVVVGDRGTGKSSLIAAAATE   35 (643)
Q Consensus        15 I~lvG~~~vGKSsL~n~l~~~   35 (643)
                      |+|.|+|||||||++++|...
T Consensus         5 I~i~G~~GsGKTTva~~L~~~   25 (176)
T d2bdta1           5 YIITGPAGVGKSTTCKRLAAQ   25 (176)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            889999999999999999864

>d1dtla_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.13  E-value=0.021  Score=48.47  Aligned_cols=142  Identities=18%  Similarity=0.273  Sum_probs=89.9

Q ss_pred             ccchHHHHHHHHhhhhhcCCCC-CCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhccCCcCCCCcChhhHHHHHHH
Q 006490          188 QTLKPRCVRALKRIFIICDHDM-DGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHAL  266 (643)
Q Consensus       188 ~~~~~~~~~~l~~~~~~~~~~~-~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~  266 (643)
                      ..+++.-.+.++.+|...|.+. +|.++..++..... .++...+..++..+...+...     ....++.+.|......
T Consensus         6 ~~Lt~~~~~~l~~~F~~~D~d~~dG~I~~~e~~~~l~-~lg~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~   79 (156)
T d1dtla_           6 EQLTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMR-MLGQNPTPEELQEMIDEVDED-----GSGTVDFDEFLVMMVR   79 (156)
T ss_dssp             GGSCHHHHHHHHHHHHHHTTTCGGGSBCHHHHHHHHH-HTTCCCCHHHHHHHHHHHCTT-----SSSSBCHHHHHHHHHH
T ss_pred             HHCCHHHHHHHHHHHHHHcCCCCCCeECHHHHHHHHH-HcCCCCCHHHHHHHHHHhhcc-----CCCccchhhhhhhhhh
Confidence            3456666777899999999885 79999999976644 467778877777766555432     1234566665544331


Q ss_pred             HHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCChhHHhhhhccCC
Q 006490          267 FIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAP  346 (643)
Q Consensus       267 ~~~~~~~~~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~~~~~~  346 (643)
                      ......                                      ...-..-++.+|+.||.|++|.++..|+..++....
T Consensus        80 ~~~~~~--------------------------------------~~~~~~~l~~~F~~~D~d~~G~I~~~e~~~~~~~~~  121 (156)
T d1dtla_          80 SMKDDS--------------------------------------KGKSEEELSDLFRMFDKNADGYIDLEELKIMLQATG  121 (156)
T ss_dssp             HHC-------------------------------------------CHHHHHHHHHHHHCTTCSSEEEHHHHGGGGTTC-
T ss_pred             cccccc--------------------------------------cccHHHHHHHHHHHhCcCCCCcCcHHHHHHHHhhcC
Confidence            110000                                      011234578899999999999999999999987652


Q ss_pred             CCCCCC---CCCCCCccccCCcccchhhhhh
Q 006490          347 ESPWDE---APYKDAAETTALGNLTLKGFVS  374 (643)
Q Consensus       347 ~~p~~~---~~~~~~~~~~~~~~~~~~~~~~  374 (643)
                       .|+..   ..+......+.+|.|+...|..
T Consensus       122 -~~ls~~e~~~i~~~~D~d~dG~I~~~eF~~  151 (156)
T d1dtla_         122 -ETITEDDIEELMKDGDKNNDGRIDYDEFLE  151 (156)
T ss_dssp             --CCCHHHHHHHHHHHCTTSSSEEEHHHHHH
T ss_pred             -CCCCHHHHHHHHHHhCCCCCCeEeHHHHHH
Confidence             22221   1111223456778888877764

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.13  E-value=0.0048  Score=54.20  Aligned_cols=23  Identities=22%  Similarity=0.377  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 006490          424 FRCLLFGPQNAGKSALLNSFLER  446 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~  446 (643)
                      ++|+|+|+|||||||+...|...
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVAA   23 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999988653

>d1nyaa_ a.39.1.5 (A:) Calerythrin {Saccharopolyspora erythraea [TaxId: 1836]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calerythrin
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=95.10  E-value=0.012  Score=50.94  Aligned_cols=148  Identities=21%  Similarity=0.233  Sum_probs=87.5

Q ss_pred             HHHHHhhhhhcCCCCCCCCChHHHHHHhhhh---cCCCCCHHHHHHHHHHHHhhccC------CcCCCCcChhhHHHHHH
Q 006490          195 VRALKRIFIICDHDMDGALNDAELNEFQVKC---FNAPLQPAEIVGVKRVVQEKQHD------GVNDLGLTLSGFLFLHA  265 (643)
Q Consensus       195 ~~~l~~~~~~~~~~~~~~l~~~el~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~f~~~~~  265 (643)
                      .+.|+++|...|.+.+|.++..|+.......   .+......++..+..........      .-....++...+.....
T Consensus         6 ~~~l~~~F~~~D~d~dG~Is~~Ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   85 (176)
T d1nyaa_           6 SDRLKKRFDRWDFDGNGALERADFEKEAQHIAEAFGKDAGAAEVQTLKNAFGGLFDYLAKEAGVGSDGSLTEEQFIRVTE   85 (176)
T ss_dssp             HHHHHHHHHHCCSSCCSSBCSHHHHHHHHHHHHHTSSCSSSHHHHHHHHHHHHHHHHHHHHHTSCTTCCBCHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCCcCcHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHh
Confidence            4568889999999999999999986654332   33334444444444433322110      11122355555554443


Q ss_pred             HHHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCChhHHhhhhccC
Q 006490          266 LFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTA  345 (643)
Q Consensus       266 ~~~~~~~~~~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~~~~~  345 (643)
                      ......                                  ....+...-...++.+|..||.|++|.|+.+|+..++...
T Consensus        86 ~~~~~~----------------------------------~~~~~~~~~~~~~~~~F~~~D~d~dG~Is~~E~~~~~~~~  131 (176)
T d1nyaa_          86 NLIFEQ----------------------------------GEASFNRVLGPVVKGIVGMCDKNADGQINADEFAAWLTAL  131 (176)
T ss_dssp             HHHSSS----------------------------------CHHHHHHHHHHHHHHHHHHTCSSCCSEEEHHHHHHHHHHT
T ss_pred             hhhhhh----------------------------------hhhhhHHHHHHHHHHHHHHHccCCChhhhHHHHHHHHHhc
Confidence            222110                                  0111223345678889999999999999999999988765


Q ss_pred             CCCCCCCCCCCCCccccCCcccchhhhhhhh
Q 006490          346 PESPWDEAPYKDAAETTALGNLTLKGFVSKW  376 (643)
Q Consensus       346 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~w  376 (643)
                      +-.+............+.+|.|+...|+..+
T Consensus       132 ~~~~~~~~~~f~~~D~d~dG~i~~~Ef~~~~  162 (176)
T d1nyaa_         132 GMSKAEAAEAFNQVDTNGNGELSLDELLTAV  162 (176)
T ss_dssp             TCCHHHHHHHHHHHCTTCSSEEEHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHCCCCCCcEeHHHHHHHH
Confidence            4322222222233456788888888876543

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=95.07  E-value=0.0049  Score=52.78  Aligned_cols=22  Identities=32%  Similarity=0.516  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 006490           14 RVVVVGDRGTGKSSLIAAAATE   35 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~~   35 (643)
                      .|+|+|++||||||+.+.|...
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~   25 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQ   25 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4999999999999999998764

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.06  E-value=0.0068  Score=53.37  Aligned_cols=21  Identities=29%  Similarity=0.487  Sum_probs=19.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 006490           15 VVVVGDRGTGKSSLIAAAATE   35 (643)
Q Consensus        15 I~lvG~~~vGKSsL~n~l~~~   35 (643)
                      |+|+|++|||||||++.|...
T Consensus         5 ivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            789999999999999999865

>d1hqva_ a.39.1.8 (A:) Apoptosis-linked protein alg-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Apoptosis-linked protein alg-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.05  E-value=0.05  Score=47.42  Aligned_cols=125  Identities=19%  Similarity=0.323  Sum_probs=85.5

Q ss_pred             HHHHhhhhhcCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhccCCcCCCCcChhhHHHHHHHHHHcCCccc
Q 006490          196 RALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLET  275 (643)
Q Consensus       196 ~~l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~  275 (643)
                      ..|..+|...|.+.++.++..|+......+...+.....+..+...+...     .+..|+++.|+.++..         
T Consensus        19 ~~L~~iF~~~D~d~~G~Is~~E~~~~l~~~~~~~~~~~~~~~l~~~~D~d-----~~g~i~~~EFl~~~~~---------   84 (181)
T d1hqva_          19 SFLWNVFQRVDKDRSGVISDNELQQALSNGTWTPFNPVTVRSIISMFDRE-----NKAGVNFSEFTGVWKY---------   84 (181)
T ss_dssp             HHHHHHHHHHCTTCCSSBCHHHHHHHCCCSSSSCCCHHHHHHHHHHHCCS-----SSSSBCHHHHHHHHHH---------
T ss_pred             HHHHHHHHHHcCCCCCcCcHHHHHHHHHHcCCCcccHHHHHHHhhccccc-----cccchhhhHHHhhhhh---------
Confidence            45888999999999999999999888777666677777766666554332     2446999999988652         


Q ss_pred             hhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCChhHHhhhhccCCCCCCCCC--
Q 006490          276 TWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEA--  353 (643)
Q Consensus       276 ~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~--  353 (643)
                                                             ...++..|+.||.+++|.++..++..++..... +....  
T Consensus        85 ---------------------------------------~~~~~~~f~~~D~~~~G~i~~~el~~~l~~~~~-~l~~e~~  124 (181)
T d1hqva_          85 ---------------------------------------ITDWQNVFRTYDRDNSGMIDKNELKQALSGFGY-RLSDQFH  124 (181)
T ss_dssp             ---------------------------------------HHHHHHHHHHHCTTCCSSBCHHHHHHHHHHHTB-CCCHHHH
T ss_pred             ---------------------------------------ccccccccccccccccchhhhHHHHHHHHHcCC-cchhHHH
Confidence                                                   223567788888888888888888888775422 11111  


Q ss_pred             -CCCCCccccCCcccchhhhhh
Q 006490          354 -PYKDAAETTALGNLTLKGFVS  374 (643)
Q Consensus       354 -~~~~~~~~~~~~~~~~~~~~~  374 (643)
                       ........+..|.|+...|+.
T Consensus       125 ~~~~~~~d~~~dg~Is~~eF~~  146 (181)
T d1hqva_         125 DILIRKFDRQGRGQIAFDDFIQ  146 (181)
T ss_dssp             HHHHHHHCSSCSSCBCHHHHHH
T ss_pred             HHHHHHhCCCCCCcCcHHHHHH
Confidence             111112335667777777753

>d2obha1 a.39.1.5 (A:26-166) Calmodulin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.00  E-value=0.014  Score=48.61  Aligned_cols=136  Identities=15%  Similarity=0.196  Sum_probs=90.1

Q ss_pred             HHHHHHHHhhhhhcCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhccCCcCCCCcChhhHHHHHHHHHHcC
Q 006490          192 PRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKG  271 (643)
Q Consensus       192 ~~~~~~l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~  271 (643)
                      ++..+.|+++|...|.+++|.++..|+..... .++.......+..+.......     .+..++.+.|+........  
T Consensus         2 ~~~~~elk~~F~~~D~~~~G~Is~~e~~~~l~-~~~~~~~~~~~~~~~~~~d~~-----~~g~i~~~ef~~~~~~~~~--   73 (141)
T d2obha1           2 EEQKQEIREAFDLFDADGTGTIDVKELKVAMR-ALGFEPKKEEIKKMISEIDKE-----GTGKMNFGDFLTVMTQKMS--   73 (141)
T ss_dssp             HHHHHHHHHHHHTTCTTCCSEEEGGGHHHHHH-HTTCCCCHHHHHHHHHHHTTT-----CCSEEEHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHHcCCCCCeEeHHHHHHHHH-hcCCchhHHHHHHHHHhhccC-----CCCeechHHHHHHHHHHHh--
Confidence            34566789999999999999999999976644 467777777777766655321     2345888888877542221  


Q ss_pred             CccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCChhHHhhhhccCC-CC-C
Q 006490          272 RLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAP-ES-P  349 (643)
Q Consensus       272 ~~~~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~~~~~~-~~-p  349 (643)
                                                             ......-++.+|..+|.+++|.++..++..++.... .. +
T Consensus        74 ---------------------------------------~~~~~~~l~~~f~~~d~~~~G~i~~~el~~~l~~~g~~l~~  114 (141)
T d2obha1          74 ---------------------------------------EKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTD  114 (141)
T ss_dssp             ---------------------------------------HHHHHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHTTCCCCH
T ss_pred             ---------------------------------------hhccHHHHHHHHHHhcccCCCCccHHHHHHHHHHhCCCCCH
Confidence                                                   111234577899999999999999999988887542 11 1


Q ss_pred             CCCCCCCCCccccCCcccchhhhhh
Q 006490          350 WDEAPYKDAAETTALGNLTLKGFVS  374 (643)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~  374 (643)
                      +...........+.+|.|+...|++
T Consensus       115 ~e~~~l~~~~D~d~dG~i~~~EF~~  139 (141)
T d2obha1         115 EELQEMIDEADRDGDGEVSEQEFLR  139 (141)
T ss_dssp             HHHHHHHHHHCTTSSSSBCHHHHHH
T ss_pred             HHHHHHHHHHCCCCCCCEeHHHHHH
Confidence            1111222234456677777766654

>d2hf5a1 a.39.1.5 (A:81-113) Troponin C {Human (Homo sapiens), cardiac isoform [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Human (Homo sapiens), cardiac isoform [TaxId: 9606]

Probab=94.99  E-value=0.0078  Score=36.05  Aligned_cols=27  Identities=30%  Similarity=0.560  Sum_probs=24.5

Q ss_pred             HHHHhhhhhcCCCCCCCChhHHhhhhc
Q 006490          317 FLRGIFGLYDIDNDGAVRPAELEDLFL  343 (643)
Q Consensus       317 f~~~~f~~~~~~~~~~l~~~~~~~~~~  343 (643)
                      -|+..|+.||+|++|.++..||..++.
T Consensus         4 el~eAF~~FDkDg~G~Is~~EL~~vm~   30 (33)
T d2hf5a1           4 EIREAFRVFDKDGNGYISAAELRHVMT   30 (33)
T ss_dssp             HHHHHHHHHSSSCCSCBCHHHHHHHTT
T ss_pred             HHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence            578899999999999999999988765

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.98  E-value=0.0053  Score=53.11  Aligned_cols=20  Identities=30%  Similarity=0.423  Sum_probs=18.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 006490           15 VVVVGDRGTGKSSLIAAAAT   34 (643)
Q Consensus        15 I~lvG~~~vGKSsL~n~l~~   34 (643)
                      |.|+|.+|||||||+++|+.
T Consensus         4 i~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           4 WQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            46999999999999999875

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.95  E-value=0.0044  Score=55.02  Aligned_cols=24  Identities=25%  Similarity=0.248  Sum_probs=21.1

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhc
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLE  445 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~  445 (643)
                      .+.-|.++|.|||||||+.+.|..
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456789999999999999999964

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=94.91  E-value=0.0061  Score=51.66  Aligned_cols=21  Identities=29%  Similarity=0.495  Sum_probs=19.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 006490          426 CLLFGPQNAGKSALLNSFLER  446 (643)
Q Consensus       426 i~ivG~~nvGKSSLln~l~~~  446 (643)
                      |+|.|.|||||||++++|...
T Consensus         5 Iii~G~pGsGKTTla~~L~~~   25 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIAK   25 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            788999999999999998754

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=94.90  E-value=0.006  Score=53.67  Aligned_cols=23  Identities=26%  Similarity=0.497  Sum_probs=20.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 006490          424 FRCLLFGPQNAGKSALLNSFLER  446 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~  446 (643)
                      ++|+|+|+|||||||+...|...
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVEK   23 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            48999999999999999998864

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=94.90  E-value=0.0076  Score=53.58  Aligned_cols=25  Identities=12%  Similarity=0.231  Sum_probs=21.6

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcC
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLER  446 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~  446 (643)
                      .+..|+|+|+|||||||+..+|...
T Consensus         5 kp~iI~i~G~pGSGKsT~a~~La~~   29 (194)
T d1qf9a_           5 KPNVVFVLGGPGSGKGTQCANIVRD   29 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            4567899999999999999999753

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=94.90  E-value=0.0082  Score=52.21  Aligned_cols=26  Identities=19%  Similarity=0.388  Sum_probs=22.3

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhc
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAAT   34 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~   34 (643)
                      ..+++-|.|+|.|||||||+.+.|..
T Consensus         3 ~~~g~~I~l~G~~GsGKTTia~~La~   28 (183)
T d1m8pa3           3 ATQGFTIFLTGYMNSGKDAIARALQV   28 (183)
T ss_dssp             TTCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            45668899999999999999988864

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.83  E-value=0.0064  Score=52.53  Aligned_cols=21  Identities=19%  Similarity=0.494  Sum_probs=18.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 006490          426 CLLFGPQNAGKSALLNSFLER  446 (643)
Q Consensus       426 i~ivG~~nvGKSSLln~l~~~  446 (643)
                      +.|+|.+|||||||+++|+..
T Consensus         4 i~I~G~~gSGKTTli~~l~~~   24 (165)
T d1xjca_           4 WQVVGYKHSGKTTLMEKWVAA   24 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHHH
Confidence            469999999999999999753

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.81  E-value=0.0058  Score=52.84  Aligned_cols=21  Identities=38%  Similarity=0.526  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 006490           14 RVVVVGDRGTGKSSLIAAAAT   34 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~   34 (643)
                      +|+|+|.|||||||+.+.|..
T Consensus         3 ~IvliG~~G~GKSTig~~La~   23 (165)
T d2iyva1           3 KAVLVGLPGSGKSTIGRRLAK   23 (165)
T ss_dssp             SEEEECSTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            599999999999999988864

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.80  E-value=0.0066  Score=53.31  Aligned_cols=23  Identities=39%  Similarity=0.668  Sum_probs=20.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 006490          424 FRCLLFGPQNAGKSALLNSFLER  446 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~  446 (643)
                      ++|+|+|+|||||||+...|...
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~~   23 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAEK   23 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999998754

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=94.79  E-value=0.0075  Score=53.49  Aligned_cols=25  Identities=16%  Similarity=0.446  Sum_probs=22.5

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcC
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLER  446 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~  446 (643)
                      +.++|+|+|+|||||||+...|...
T Consensus         5 r~mrIiliG~PGSGKtT~a~~La~~   29 (189)
T d2ak3a1           5 RLLRAAIMGAPGSGKGTVSSRITKH   29 (189)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cceeEEEECCCCCCHHHHHHHHHHH
Confidence            4579999999999999999999864

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=94.74  E-value=0.0075  Score=55.57  Aligned_cols=23  Identities=22%  Similarity=0.151  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 006490          425 RCLLFGPQNAGKSALLNSFLERP  447 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~~  447 (643)
                      +++|+|++|+|||||++.+.|-.
T Consensus        31 ~vaIvG~sGsGKSTLl~ll~gl~   53 (241)
T d2pmka1          31 VIGIVGRSGSGKSTLTKLIQRFY   53 (241)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            79999999999999999999864

>d1uhka1 a.39.1.5 (A:3-189) Calcium-regulated photoprotein {Jellyfish (Aequorea aequorea), aequorin [TaxId: 168712]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium-regulated photoprotein
species: Jellyfish (Aequorea aequorea), aequorin [TaxId: 168712]

Probab=94.68  E-value=0.0048  Score=54.50  Aligned_cols=154  Identities=13%  Similarity=0.096  Sum_probs=90.1

Q ss_pred             HHHHHHHHhhhhhcCCCCCCCCChHHHHHHhhhh-cC-CCCCHHHHHHHHHHHHhh---ccCCcCCCCcChhhHHHHHHH
Q 006490          192 PRCVRALKRIFIICDHDMDGALNDAELNEFQVKC-FN-APLQPAEIVGVKRVVQEK---QHDGVNDLGLTLSGFLFLHAL  266 (643)
Q Consensus       192 ~~~~~~l~~~~~~~~~~~~~~l~~~el~~~~~~~-~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~f~~~~~~  266 (643)
                      |...+.++++|...|.+++|.++..|+....... .. ........+ +...+...   .........+...+|+.....
T Consensus         8 p~~~~~~k~~F~~~D~d~dG~Is~~Ef~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (187)
T d1uhka1           8 PRWIGRHKHMFNFLDVNHNGKISLDEMVYKASDIVINNLGATPEQAK-RHKDAVEAFFGGAGMKYGVETDWPAYIEGWKK   86 (187)
T ss_dssp             HHHHHHHHHHHHHHCTTCCSEEEHHHHHHHHHHHHHHTSCCCHHHHH-HHHHHHHHHHHHTTCCTTCEEEHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCCCcCcHHHHHHHHHHHHHHHhccCccHHH-HHHHHHHhhhhcccccccccccHHHHHHHHHH
Confidence            3445667889999999999999999986544332 11 122222222 22222222   112223445777777766553


Q ss_pred             HHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCChhHHhhhhccCC
Q 006490          267 FIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAP  346 (643)
Q Consensus       267 ~~~~~~~~~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~~~~~~  346 (643)
                      .......    ...     .                      .....-..++..+|..+|.|++|.++.+|+.+++....
T Consensus        87 ~~~~~~~----~~~-----~----------------------~~~~~~~~~~~~~F~~~D~d~~G~Is~~El~~~l~~~g  135 (187)
T d1uhka1          87 LATDELE----KYA-----K----------------------NEPTLIRIWGDALFDIVDKDQNGAITLDEWKAYTKAAG  135 (187)
T ss_dssp             HHHHHHH----HHH-----T----------------------TCCCHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHT
T ss_pred             HHHHHHH----hhh-----h----------------------hhHHHHHHHHHHHHHHHccCCCcccchHHHHHHHHHhC
Confidence            3321100    000     0                      01122345788899999999999999999998887652


Q ss_pred             C-C-CCCCCCCCCCccccCCcccchhhhhhhhh
Q 006490          347 E-S-PWDEAPYKDAAETTALGNLTLKGFVSKWA  377 (643)
Q Consensus       347 ~-~-p~~~~~~~~~~~~~~~~~~~~~~~~~~w~  377 (643)
                      . . +............+.+|.|+...|++.+.
T Consensus       136 ~~~~~~~~~~lf~~~D~d~dG~Is~~EF~~~~~  168 (187)
T d1uhka1         136 IIQSSEDCEETFRVCDIDESGQLDVDEMTRQHL  168 (187)
T ss_dssp             SCCSHHHHHHHHHHSCCCTTSCEEHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHhCCCCCCCEeHHHHHHHHH
Confidence            1 1 12222233345678889999998876654

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=94.55  E-value=0.0085  Score=55.15  Aligned_cols=26  Identities=31%  Similarity=0.405  Sum_probs=22.3

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCC
Q 006490           11 TGVRVVVVGDRGTGKSSLIAAAATES   36 (643)
Q Consensus        11 ~~~kI~lvG~~~vGKSsL~n~l~~~~   36 (643)
                      +.=+|+|+|++|+|||||++.+.+-.
T Consensus        28 ~Ge~vaIvG~sGsGKSTLl~ll~gl~   53 (241)
T d2pmka1          28 QGEVIGIVGRSGSGKSTLTKLIQRFY   53 (241)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcC
Confidence            34579999999999999999988853

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.54  E-value=0.0092  Score=52.95  Aligned_cols=23  Identities=30%  Similarity=0.475  Sum_probs=20.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcC
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATE   35 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~   35 (643)
                      +.|+|+|+||+||||...+|...
T Consensus         2 ~iI~i~GppGSGKsT~a~~La~~   24 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIVEK   24 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            67999999999999999988753

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=94.54  E-value=0.0078  Score=52.73  Aligned_cols=23  Identities=30%  Similarity=0.536  Sum_probs=20.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 006490          424 FRCLLFGPQNAGKSALLNSFLER  446 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~  446 (643)
                      +||+|+|+|||||||..+.|...
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~~   23 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIMEK   23 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999988743

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.53  E-value=0.0088  Score=52.47  Aligned_cols=24  Identities=38%  Similarity=0.613  Sum_probs=21.4

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcC
Q 006490          423 VFRCLLFGPQNAGKSALLNSFLER  446 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~~~  446 (643)
                      .+||+|+|+|||||||+...|...
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~~   25 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQER   25 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            468999999999999999999754

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.51  E-value=0.0081  Score=52.45  Aligned_cols=21  Identities=38%  Similarity=0.643  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 006490           14 RVVVVGDRGTGKSSLIAAAAT   34 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~   34 (643)
                      .|.|.|+||+|||||+..++.
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~   23 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            389999999999999998874

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=94.49  E-value=0.0087  Score=51.66  Aligned_cols=22  Identities=23%  Similarity=0.424  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 006490          425 RCLLFGPQNAGKSALLNSFLER  446 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~  446 (643)
                      -|+|.|+|||||||+.++|...
T Consensus         4 lI~i~G~~GsGKTTva~~L~~~   25 (176)
T d2bdta1           4 LYIITGPAGVGKSTTCKRLAAQ   25 (176)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3899999999999999999854

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=94.45  E-value=0.0088  Score=51.45  Aligned_cols=22  Identities=41%  Similarity=0.622  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 006490           14 RVVVVGDRGTGKSSLIAAAATE   35 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~~   35 (643)
                      +|+|+|.|||||||+...|...
T Consensus         2 ~I~liG~~GsGKsTi~k~La~~   23 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAKD   23 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHH
Confidence            4999999999999999988654

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=94.41  E-value=0.0098  Score=54.83  Aligned_cols=24  Identities=21%  Similarity=0.238  Sum_probs=21.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCC
Q 006490          424 FRCLLFGPQNAGKSALLNSFLERP  447 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~~  447 (643)
                      =.++|+|++|+|||||++.+.+-.
T Consensus        29 e~vaivG~sGsGKSTLl~ll~gl~   52 (242)
T d1mv5a_          29 SIIAFAGPSGGGKSTIFSLLERFY   52 (242)
T ss_dssp             EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhh
Confidence            479999999999999999999854

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.39  E-value=0.011  Score=52.45  Aligned_cols=23  Identities=22%  Similarity=0.366  Sum_probs=20.9

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhc
Q 006490          423 VFRCLLFGPQNAGKSALLNSFLE  445 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~~  445 (643)
                      ++.|+|+|+|||||||....|..
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999998875

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.37  E-value=0.0094  Score=55.37  Aligned_cols=23  Identities=22%  Similarity=0.247  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 006490          425 RCLLFGPQNAGKSALLNSFLERP  447 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~~  447 (643)
                      +++|+|++|+|||||++.+++-.
T Consensus        43 ~iaivG~sGsGKSTLl~ll~gl~   65 (253)
T d3b60a1          43 TVALVGRSGSGKSTIASLITRFY   65 (253)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTTT
T ss_pred             EEEEECCCCChHHHHHHHHhccc
Confidence            79999999999999999998854

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=94.34  E-value=0.01  Score=51.99  Aligned_cols=20  Identities=35%  Similarity=0.430  Sum_probs=18.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 006490           15 VVVVGDRGTGKSSLIAAAAT   34 (643)
Q Consensus        15 I~lvG~~~vGKSsL~n~l~~   34 (643)
                      |+|.|.|||||||++++|..
T Consensus         4 I~i~G~~GsGKsT~~~~L~~   23 (190)
T d1khta_           4 VVVTGVPGVGSTTSSQLAMD   23 (190)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            88999999999999998854

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.33  E-value=0.0098  Score=55.22  Aligned_cols=25  Identities=32%  Similarity=0.525  Sum_probs=21.7

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcC
Q 006490           11 TGVRVVVVGDRGTGKSSLIAAAATE   35 (643)
Q Consensus        11 ~~~kI~lvG~~~vGKSsL~n~l~~~   35 (643)
                      +.=+++|+|++|+|||||++.+++-
T Consensus        40 ~Ge~iaivG~sGsGKSTLl~ll~gl   64 (253)
T d3b60a1          40 AGKTVALVGRSGSGKSTIASLITRF   64 (253)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHTTT
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcc
Confidence            3447999999999999999998874

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=94.32  E-value=0.01  Score=54.64  Aligned_cols=27  Identities=19%  Similarity=0.288  Sum_probs=22.6

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCC
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATES   36 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~   36 (643)
                      ++.=+++|+|+.|+|||||++.+++-.
T Consensus        26 ~~Ge~vaivG~sGsGKSTLl~ll~gl~   52 (242)
T d1mv5a_          26 QPNSIIAFAGPSGGGKSTIFSLLERFY   52 (242)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            344579999999999999999988743

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=94.28  E-value=0.011  Score=51.22  Aligned_cols=21  Identities=33%  Similarity=0.563  Sum_probs=18.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 006490           15 VVVVGDRGTGKSSLIAAAATE   35 (643)
Q Consensus        15 I~lvG~~~vGKSsL~n~l~~~   35 (643)
                      |+|.|+|||||||+.+.|...
T Consensus         7 I~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           7 LLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             EEEEECTTSCHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999988764

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.26  E-value=0.01  Score=53.00  Aligned_cols=23  Identities=30%  Similarity=0.397  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 006490           14 RVVVVGDRGTGKSSLIAAAATES   36 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~~~   36 (643)
                      .++|+|+.|+|||||++.+++--
T Consensus        29 i~~l~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          29 VVNFHGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhccc
Confidence            58999999999999999998743

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.25  E-value=0.011  Score=54.75  Aligned_cols=23  Identities=26%  Similarity=0.343  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 006490          425 RCLLFGPQNAGKSALLNSFLERP  447 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~~  447 (643)
                      .++|+|++|||||||++.+.+-.
T Consensus        42 ~vaivG~sGsGKSTLl~li~gl~   64 (251)
T d1jj7a_          42 VTALVGPNGSGKSTVAALLQNLY   64 (251)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhccc
Confidence            79999999999999999999864

>d1m45a_ a.39.1.5 (A:) Myosin Light Chain Mlc1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Myosin Light Chain Mlc1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.22  E-value=0.0022  Score=54.40  Aligned_cols=136  Identities=16%  Similarity=0.186  Sum_probs=86.5

Q ss_pred             HHHhhhhhcCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhccCCcCCCCcChhhHHHHHHHHHHcCCccch
Q 006490          197 ALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETT  276 (643)
Q Consensus       197 ~l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~  276 (643)
                      +++.+|...|.+.+|.++.+|+...... ++...+..++..+.....    ..-+...++++.|..+..........   
T Consensus         3 ~~k~~F~~~D~d~~G~I~~~el~~~l~~-lg~~~s~~ei~~l~~~~~----~~~~~~~i~~~ef~~~~~~~~~~~~~---   74 (146)
T d1m45a_           3 ANKDIFTLFDKKGQGAIAKDSLGDYLRA-IGYNPTNQLVQDIINADS----SLRDASSLTLDQITGLIEVNEKELDA---   74 (146)
T ss_dssp             CCTTCHHHHCTTCCSEEEGGGHHHHHHH-TTCCCCHHHHHHHHHC------CC--CCEEEHHHHHHHHHHTHHHHHG---
T ss_pred             HHHHHHHHHcCCCcCCCCHHHHHHHHHH-cCCchhHHHHhhhhcccc----ccccccccccchhhhhhhhhcccccc---
Confidence            4567889999999999999999776654 477778877766643222    11123358888888876432211000   


Q ss_pred             hHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCChhHHhhhhccCCCCCCCC---C
Q 006490          277 WAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDE---A  353 (643)
Q Consensus       277 w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~---~  353 (643)
                               .                        .....+-+...|+.||.+++|.|+.+|+.+++.... .+...   .
T Consensus        75 ---------~------------------------~~~~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~g-~~l~~~ei~  120 (146)
T d1m45a_          75 ---------T------------------------TKAKTEDFVKAFQVFDKESTGKVSVGDLRYMLTGLG-EKLTDAEVD  120 (146)
T ss_dssp             ---------G------------------------GCCCTHHHHHHHHTTCSSSSSEEEHHHHHHHHHHST-TCCCHHHHH
T ss_pred             ---------c------------------------ccchHHHHHHHHHhhccccccccchhhhhhhhcccC-CcchHHHHH
Confidence                     0                        001123478889999999999999999999998652 22211   1


Q ss_pred             CCCCCccccCCcccchhhhhh
Q 006490          354 PYKDAAETTALGNLTLKGFVS  374 (643)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~  374 (643)
                      .+......+.+|.|+...|+.
T Consensus       121 ~l~~~~D~d~dG~I~y~eF~~  141 (146)
T d1m45a_         121 ELLKGVEVDSNGEIDYKKFIE  141 (146)
T ss_dssp             HHHTTCCCCTTSEEEHHHHHH
T ss_pred             HHHHHhCCCCCCcEEHHHHHH
Confidence            122234556778888877754

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.16  E-value=0.011  Score=52.74  Aligned_cols=23  Identities=26%  Similarity=0.411  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 006490          425 RCLLFGPQNAGKSALLNSFLERP  447 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~~  447 (643)
                      .++|+|+.|+|||||++.++|-.
T Consensus        29 i~~l~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          29 VVNFHGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhccc
Confidence            58999999999999999999864

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.13  E-value=0.016  Score=51.05  Aligned_cols=27  Identities=30%  Similarity=0.548  Sum_probs=22.4

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCC
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATES   36 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~   36 (643)
                      +..-++++||+||||||+++..|...-
T Consensus        41 ~~k~n~lLvG~pGVGKTalv~~LA~ri   67 (195)
T d1jbka_          41 RTKNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cCCCCeEEEecCCcccHHHHHHHHHHH
Confidence            344579999999999999998887654

>d1qv0a_ a.39.1.5 (A:) Calcium-regulated photoprotein {Hydrozoa (Obelia longissima), obelin [TaxId: 32570]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium-regulated photoprotein
species: Hydrozoa (Obelia longissima), obelin [TaxId: 32570]

Probab=94.12  E-value=0.015  Score=51.23  Aligned_cols=156  Identities=12%  Similarity=0.094  Sum_probs=83.5

Q ss_pred             hHHHHHHHHhhhhhcCCCCCCCCChHHHHHHhhh----hcCCCCCHHHHHHHHHHHHhhccCCcCCCCcChhhHHHHHHH
Q 006490          191 KPRCVRALKRIFIICDHDMDGALNDAELNEFQVK----CFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHAL  266 (643)
Q Consensus       191 ~~~~~~~l~~~~~~~~~~~~~~l~~~el~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~  266 (643)
                      .|+..+-++++|..+|.+.+|.++.+|+......    ..+......++.............-.....++.+.|+.....
T Consensus         9 ~~~~i~r~k~~F~~~D~d~dG~I~~~E~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~e~~~~~~~   88 (189)
T d1qv0a_           9 NPRWIKRHKHMFDFLDINGNGKITLDEIVSKASDDICAKLEATPEQTKRHQVCVEAFFRGCGMEYGKEIAFPQFLDGWKQ   88 (189)
T ss_dssp             CHHHHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHTHHHHTTCCHHHHHHHHHHHHHHHHHTTCCTTCCBCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHcCCCCCcCcHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhccccCCCceehHHHHHHHHH
Confidence            3556677889999999999999999998654432    223332333322221111111111223334777777666543


Q ss_pred             HHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCChhHHhhhhccCC
Q 006490          267 FIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAP  346 (643)
Q Consensus       267 ~~~~~~~~~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~~~~~~  346 (643)
                      .......       +...                        .....-...+..+|+.+|.|++|.|+.+|+..+.....
T Consensus        89 ~~~~~~~-------~~~~------------------------~~~~~~~~~~~~~F~~~D~d~~G~is~~E~~~~l~~~g  137 (189)
T d1qv0a_          89 LATSELK-------KWAR------------------------NEPTLIREWGDAVFDIFDKDGSGTITLDEWKAYGKISG  137 (189)
T ss_dssp             HHHHHHH-------HHHT------------------------TCCCHHHHHHHHHHHHTC----CEECHHHHHHHHHHHS
T ss_pred             HHHHhhh-------cccc------------------------ccHHHHHHHHHHHHHHHccCCCCcccchhhHHHHHhcC
Confidence            3211100       0000                        00122345677789999999999999999988877542


Q ss_pred             -CCCCC-CCCCCCCccccCCcccchhhhhhhhh
Q 006490          347 -ESPWD-EAPYKDAAETTALGNLTLKGFVSKWA  377 (643)
Q Consensus       347 -~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~w~  377 (643)
                       ..+.. ...+......+.+|.|+...|+..+.
T Consensus       138 ~~~~~~~~~~lf~~~D~d~dG~Is~~EF~~~~~  170 (189)
T d1qv0a_         138 ISPSQEDCEATFRHCDLDNAGDLDVDEMTRQHL  170 (189)
T ss_dssp             SCCCHHHHHHHHHHSCCCTTSCEEHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHH
Confidence             22211 11111234457788888888876543

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=94.10  E-value=0.012  Score=51.58  Aligned_cols=22  Identities=32%  Similarity=0.638  Sum_probs=18.2

Q ss_pred             cEE-EEEcCCCCCHHHHHHHHhc
Q 006490           13 VRV-VVVGDRGTGKSSLIAAAAT   34 (643)
Q Consensus        13 ~kI-~lvG~~~vGKSsL~n~l~~   34 (643)
                      +|| +|.|.+||||||+++.|..
T Consensus         1 mkiivi~G~~GsGKTT~~~~La~   23 (194)
T d1nksa_           1 MKIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            455 4679999999999999864

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.10  E-value=0.012  Score=53.59  Aligned_cols=25  Identities=44%  Similarity=0.541  Sum_probs=21.4

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCC
Q 006490           12 GVRVVVVGDRGTGKSSLIAAAATES   36 (643)
Q Consensus        12 ~~kI~lvG~~~vGKSsL~n~l~~~~   36 (643)
                      .=.++|+|+.|||||||++.+.+-.
T Consensus        26 Gei~~liGpsGsGKSTLl~~i~Gl~   50 (232)
T d2awna2          26 GEFVVFVGPSGCGKSTLLRMIAGLE   50 (232)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCChHHHHHHHHhcCC
Confidence            3458999999999999999988753

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.08  E-value=0.012  Score=54.47  Aligned_cols=26  Identities=35%  Similarity=0.502  Sum_probs=22.1

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcC
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATE   35 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~   35 (643)
                      .+.=+++|+|+.|+|||||++.+.+-
T Consensus        38 ~~Ge~vaivG~sGsGKSTLl~li~gl   63 (251)
T d1jj7a_          38 RPGEVTALVGPNGSGKSTVAALLQNL   63 (251)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcc
Confidence            34457999999999999999988874

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=94.06  E-value=0.014  Score=52.90  Aligned_cols=26  Identities=19%  Similarity=0.388  Sum_probs=22.5

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcC
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATE   35 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~   35 (643)
                      |+.++|+|-|+|||||||....|...
T Consensus         1 Mk~i~IaIdGp~GsGKgT~ak~La~~   26 (223)
T d1q3ta_           1 MKTIQIAIDGPASSGKSTVAKIIAKD   26 (223)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHH
Confidence            45678999999999999999988764

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.06  E-value=0.011  Score=51.51  Aligned_cols=20  Identities=35%  Similarity=0.625  Sum_probs=18.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 006490          426 CLLFGPQNAGKSALLNSFLE  445 (643)
Q Consensus       426 i~ivG~~nvGKSSLln~l~~  445 (643)
                      |.|.|+||+|||||+..+..
T Consensus         4 v~ItG~~GtGKTtl~~~i~~   23 (189)
T d2i3ba1           4 VFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             EEEESCCSSCHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            89999999999999999984

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.04  E-value=0.012  Score=53.48  Aligned_cols=23  Identities=30%  Similarity=0.394  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 006490          425 RCLLFGPQNAGKSALLNSFLERP  447 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~~  447 (643)
                      -++|+|++|||||||++.+.|-.
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~gl~   55 (230)
T d1l2ta_          33 FVSIMGPSGSGKSTMLNIIGCLD   55 (230)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCcchhhHhccCCC
Confidence            58999999999999999888854

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=94.00  E-value=0.017  Score=50.12  Aligned_cols=25  Identities=28%  Similarity=0.379  Sum_probs=21.7

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhc
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLE  445 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~  445 (643)
                      ..++-|.++|.|||||||+.++|..
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~   28 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQV   28 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4567899999999999999988874

>d1auib_ a.39.1.5 (B:) Calcineurin regulatory subunit (B-chain) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcineurin regulatory subunit (B-chain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.99  E-value=0.013  Score=50.51  Aligned_cols=136  Identities=19%  Similarity=0.258  Sum_probs=85.7

Q ss_pred             chHHHHHHHHhhhhhcCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhccCCcCCCCcChhhHHHHHHHHHH
Q 006490          190 LKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIE  269 (643)
Q Consensus       190 ~~~~~~~~l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~  269 (643)
                      .+++-.+.|.++|...|.+.+|.++..|+......... +    .++.+.+.+   .++  .+..++++.|+.....+. 
T Consensus        10 ft~eei~~l~~~F~~~D~d~~G~I~~~E~~~~~~~~~~-~----~~~~l~~~~---d~~--~~g~i~~~EFl~~~~~~~-   78 (165)
T d1auib_          10 FDADEIKRLGKRFKKLDLDNSGSLSVEEFMSLPELQQN-P----LVQRVIDIF---DTD--GNGEVDFKEFIEGVSQFS-   78 (165)
T ss_dssp             CCHHHHHHHHHHHHHHCTTCCSEECHHHHTTSHHHHTC-T----THHHHHHHH---CTT--CSSSEEHHHHHHHHGGGC-
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHhhhccCC-H----HHHHHHHHH---ccc--cchhhhhhhhhhhccccc-
Confidence            45666778999999999999999999998543322221 1    233333333   222  234589999987643110 


Q ss_pred             cCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCChhHHhhhhccCCCCC
Q 006490          270 KGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESP  349 (643)
Q Consensus       270 ~~~~~~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~p  349 (643)
                                                              ........+...|..+|.|++|.++.+|+.+++....+..
T Consensus        79 ----------------------------------------~~~~~~~~~~~~f~~~d~d~~g~Is~~el~~~l~~~~~~~  118 (165)
T d1auib_          79 ----------------------------------------VKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKMMVGNN  118 (165)
T ss_dssp             ----------------------------------------TTCCHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHHTTS
T ss_pred             ----------------------------------------cchhhHHHHHHHHHHhcccccccccHHHHHHHHHHhcccc
Confidence                                                    0112356788899999999999999999999887654332


Q ss_pred             CCCC-------CCCCCccccCCcccchhhhhhhh
Q 006490          350 WDEA-------PYKDAAETTALGNLTLKGFVSKW  376 (643)
Q Consensus       350 ~~~~-------~~~~~~~~~~~~~~~~~~~~~~w  376 (643)
                      ....       ........+.+|.|+...|.+..
T Consensus       119 ~~~~~~~~~~~~~~~~~D~~~dG~Is~~EF~~i~  152 (165)
T d1auib_         119 LKDTQLQQIVDKTIINADKDGDGRISFEEFCAVV  152 (165)
T ss_dssp             SCHHHHHHHHHHHHHHHCTTSSSSEEHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHcCCCCCCcEeHHHHHHHH
Confidence            2211       11112335667778887776543

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.99  E-value=0.012  Score=53.47  Aligned_cols=23  Identities=26%  Similarity=0.439  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcC
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATE   35 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~   35 (643)
                      =.++|+|++|||||||++.+.+-
T Consensus        32 e~~~iiG~sGsGKSTLl~~i~gl   54 (230)
T d1l2ta_          32 EFVSIMGPSGSGKSTMLNIIGCL   54 (230)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCcchhhHhccCC
Confidence            35899999999999999988774

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.96  E-value=0.013  Score=53.33  Aligned_cols=23  Identities=30%  Similarity=0.462  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 006490          425 RCLLFGPQNAGKSALLNSFLERP  447 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~~  447 (643)
                      -++|+|++|||||||++.+.|-.
T Consensus        28 i~~liGpsGsGKSTLl~~i~Gl~   50 (232)
T d2awna2          28 FVVFVGPSGCGKSTLLRMIAGLE   50 (232)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            58999999999999999998864

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.92  E-value=0.013  Score=55.27  Aligned_cols=23  Identities=26%  Similarity=0.336  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 006490          425 RCLLFGPQNAGKSALLNSFLERP  447 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~~  447 (643)
                      .++|+|+.|+|||||++.++|--
T Consensus        64 ~vaivG~nGsGKSTLl~~i~Gl~   86 (281)
T d1r0wa_          64 MLAITGSTGSGKTSLLMLILGEL   86 (281)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhCCC
Confidence            69999999999999999999854

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.91  E-value=0.014  Score=51.78  Aligned_cols=21  Identities=43%  Similarity=0.637  Sum_probs=19.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 006490           15 VVVVGDRGTGKSSLIAAAATE   35 (643)
Q Consensus        15 I~lvG~~~vGKSsL~n~l~~~   35 (643)
                      |+|+|++|||||||+++|+..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~   23 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQE   23 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            899999999999999999764

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.89  E-value=0.014  Score=55.15  Aligned_cols=25  Identities=32%  Similarity=0.561  Sum_probs=21.8

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcC
Q 006490           11 TGVRVVVVGDRGTGKSSLIAAAATE   35 (643)
Q Consensus        11 ~~~kI~lvG~~~vGKSsL~n~l~~~   35 (643)
                      +.=.|+|+|+.|+|||||++.+++-
T Consensus        61 ~Ge~vaivG~nGsGKSTLl~~i~Gl   85 (281)
T d1r0wa_          61 KGEMLAITGSTGSGKTSLLMLILGE   85 (281)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhCC
Confidence            3446999999999999999999874

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.82  E-value=0.12  Score=47.35  Aligned_cols=22  Identities=27%  Similarity=0.421  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 006490           14 RVVVVGDRGTGKSSLIAAAATE   35 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~~   35 (643)
                      .++|.|+||+||||++..++..
T Consensus        35 ~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          35 HLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHh
Confidence            4899999999999999888764

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=93.80  E-value=0.015  Score=53.18  Aligned_cols=24  Identities=25%  Similarity=0.368  Sum_probs=21.2

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCC
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATES   36 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~~   36 (643)
                      =.++|+|+.|+|||||++.+.+-.
T Consensus        33 e~~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          33 EFLVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCChHHHHHHHHHcCC
Confidence            358999999999999999998853

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.78  E-value=0.014  Score=51.77  Aligned_cols=22  Identities=23%  Similarity=0.451  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 006490           14 RVVVVGDRGTGKSSLIAAAATE   35 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~~   35 (643)
                      .|+|+|+|||||||++..|...
T Consensus        10 iI~i~GppGSGKsT~a~~La~~   31 (196)
T d1ukza_          10 VIFVLGGPGAGKGTQCEKLVKD   31 (196)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999999764

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=93.78  E-value=0.014  Score=49.61  Aligned_cols=22  Identities=32%  Similarity=0.558  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 006490          425 RCLLFGPQNAGKSALLNSFLER  446 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~  446 (643)
                      .|+++|++||||||+.+.|...
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~   25 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQ   25 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999999764

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=93.77  E-value=0.02  Score=49.26  Aligned_cols=23  Identities=30%  Similarity=0.465  Sum_probs=19.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcC
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATE   35 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~   35 (643)
                      --|+|+|.|||||||+.++|...
T Consensus         7 ~iivl~G~~GsGKsT~a~~La~~   29 (171)
T d1knqa_           7 HIYVLMGVSGSGKSAVASEVAHQ   29 (171)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            34778999999999999998764

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.74  E-value=0.015  Score=51.26  Aligned_cols=21  Identities=33%  Similarity=0.667  Sum_probs=19.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 006490          426 CLLFGPQNAGKSALLNSFLER  446 (643)
Q Consensus       426 i~ivG~~nvGKSSLln~l~~~  446 (643)
                      |+|+|++|||||||+++|+..
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            799999999999999999865

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.73  E-value=0.016  Score=53.00  Aligned_cols=23  Identities=30%  Similarity=0.429  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 006490           14 RVVVVGDRGTGKSSLIAAAATES   36 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~~~   36 (643)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            46899999999999999998853

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.68  E-value=0.016  Score=52.96  Aligned_cols=23  Identities=39%  Similarity=0.670  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 006490          425 RCLLFGPQNAGKSALLNSFLERP  447 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~~  447 (643)
                      -++|+|+.|||||||++.+.|-.
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            36799999999999999999865

>d2mysb_ a.39.1.5 (B:) Myosin Essential Chain {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Myosin Essential Chain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=93.66  E-value=0.043  Score=45.85  Aligned_cols=130  Identities=18%  Similarity=0.323  Sum_probs=77.2

Q ss_pred             HHHHHHhhhhhcCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhccCCcCCCCcChhhHHHHHHHHHHcCCc
Q 006490          194 CVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRL  273 (643)
Q Consensus       194 ~~~~l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~  273 (643)
                      ....++..|...|.+.+|.++..++..........+.....+..   ....      ....++++.|+.......   . 
T Consensus         5 qi~el~e~F~~~D~~~~G~I~~~e~~~~l~~lg~~~~~~~~~~~---~~~~------~~g~i~~~eF~~~~~~~~---~-   71 (145)
T d2mysb_           5 EIEDFKEAFTVIDQNADGIIDKDDLRETFAAMGRLNVKNEELDA---MIKE------ASGPINFTVFLTMFGEKL---K-   71 (145)
T ss_pred             HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHhCCCcchHHHHHH---HHHh------ccCceeechhhhhhhhcc---c-
Confidence            34567888999999999999999997765443222333332222   2211      123477777776633100   0 


Q ss_pred             cchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCChhHHhhhhccCCCCCCCC-
Q 006490          274 ETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDE-  352 (643)
Q Consensus       274 ~~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~-  352 (643)
                                                           .....+.++.+|+.||.+++|.++..++..++... +.|... 
T Consensus        72 -------------------------------------~~~~~~~l~~aF~~fD~~~~g~I~~~el~~~l~~~-g~~ls~~  113 (145)
T d2mysb_          72 -------------------------------------GADPEDVIMGAFKVLDPDGKGSIKKSFLEELLTTG-GGRFTPE  113 (145)
T ss_pred             -------------------------------------ccchHHHHHHHHHhhhhcccchhhHHHHHHHHHHc-CCCCCHH
Confidence                                                 01123568889999999999999999999988765 223221 


Q ss_pred             --CCCCCCccccCCcccchhhhhh
Q 006490          353 --APYKDAAETTALGNLTLKGFVS  374 (643)
Q Consensus       353 --~~~~~~~~~~~~~~~~~~~~~~  374 (643)
                        .........+.+|.|+...|++
T Consensus       114 e~~~~~~~~d~d~dg~I~y~eF~~  137 (145)
T d2mysb_         114 EIKNMWAAFPPDVAGNVDYKNICY  137 (145)
T ss_pred             HHHHHHHHhCCCCCCeEeHHHHHH
Confidence              1111223345555665554443

>d1y1xa_ a.39.1.8 (A:) Programmed cell death 6 protein-like protein {Leishmania major [TaxId: 5664]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Programmed cell death 6 protein-like protein
species: Leishmania major [TaxId: 5664]

Probab=93.66  E-value=0.056  Score=47.16  Aligned_cols=125  Identities=20%  Similarity=0.241  Sum_probs=83.3

Q ss_pred             HHHhhhhhcCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhccCCcCCCCcChhhHHHHHHHHHHcCCccch
Q 006490          197 ALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETT  276 (643)
Q Consensus       197 ~l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~  276 (643)
                      .|++.|...|.+.+|.++..|+..... ..+..++..++..+...+...     ....++.+.|+..+..          
T Consensus        19 ~l~~~F~~~D~d~dG~Is~~El~~~l~-~l~~~~s~~~~~~l~~~~d~d-----~~~~i~~~ef~~~~~~----------   82 (182)
T d1y1xa_          19 ELMEWFRAVDTDGSGAISVPELNAALS-SAGVPFSLATTEKLLHMYDKN-----HSGEITFDEFKDLHHF----------   82 (182)
T ss_dssp             CHHHHHHHHCTTCSSSBCHHHHHHHHC-BTTBCCCHHHHHHHHHHHCTT-----CSSSBCHHHHHHHHHH----------
T ss_pred             HHHHHHHHHcCCCcCCCCHHHHHHHHH-HhcccCchhhhhhhhcccccc-----cccccccccccccccc----------
Confidence            367778889999999999999977543 356778888777766555322     2334777777665431          


Q ss_pred             hHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCChhHHhhhhccCC-CCC-CCCCC
Q 006490          277 WAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAP-ESP-WDEAP  354 (643)
Q Consensus       277 w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~~~~~~-~~p-~~~~~  354 (643)
                                                            ...+...|..+|.+++|.++.+|+.+++...- ..+ .....
T Consensus        83 --------------------------------------~~~~~~~F~~~D~~~~g~I~~~el~~~l~~~g~~ls~~e~~~  124 (182)
T d1y1xa_          83 --------------------------------------ILSMREGFRKRDSSGDGRLDSNEVRAALLSSGYQVSEQTFQA  124 (182)
T ss_dssp             --------------------------------------HHHHHHHHHHHCTTSSSCBCHHHHHHHHHTTSCCCCHHHHHH
T ss_pred             --------------------------------------ccccccchhccccccchhhhhHHHHHHHHHhCCchhHHHHHH
Confidence                                                  23456678888999999999988888877642 111 11222


Q ss_pred             CCCCccccCCcccchhhhhhh
Q 006490          355 YKDAAETTALGNLTLKGFVSK  375 (643)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~  375 (643)
                      .......+.+|.|+...|+..
T Consensus       125 i~~~~d~~~dg~I~~~eF~~~  145 (182)
T d1y1xa_         125 LMRKFDRQRRGSLGFDDYVEL  145 (182)
T ss_dssp             HHHHHCTTCSSSBCHHHHHHH
T ss_pred             HHhhcccCCCCCcCHHHHHHH
Confidence            223345567778888777664

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=93.65  E-value=0.016  Score=50.10  Aligned_cols=20  Identities=30%  Similarity=0.521  Sum_probs=18.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 006490           15 VVVVGDRGTGKSSLIAAAAT   34 (643)
Q Consensus        15 I~lvG~~~vGKSsL~n~l~~   34 (643)
                      |+|+|.|||||||+.+.|..
T Consensus         5 Iil~G~~GsGKSTia~~LA~   24 (170)
T d1e6ca_           5 IFMVGARGCGMTTVGRELAR   24 (170)
T ss_dssp             EEEESCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            88999999999999998864

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=93.63  E-value=0.038  Score=54.49  Aligned_cols=26  Identities=31%  Similarity=0.592  Sum_probs=20.4

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcC
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATE   35 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~   35 (643)
                      +..-+++|||+||||||+++..|...
T Consensus        41 ~~k~n~llvG~~GvGKtaiv~~la~~   66 (387)
T d1qvra2          41 RTKNNPVLIGEPGVGKTAIVEGLAQR   66 (387)
T ss_dssp             SSCCCCEEEECTTSCHHHHHHHHHHH
T ss_pred             CCCCCCeEECCCCCCHHHHHHHHHHH
Confidence            34456899999999999999766643

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=93.63  E-value=0.011  Score=54.72  Aligned_cols=24  Identities=25%  Similarity=0.224  Sum_probs=21.3

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCC
Q 006490          424 FRCLLFGPQNAGKSALLNSFLERP  447 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~~  447 (643)
                      =+++|+|++|+|||||++.+.+-.
T Consensus        45 e~vaivG~sGsGKSTLl~ll~gl~   68 (255)
T d2hyda1          45 ETVAFVGMSGGGKSTLINLIPRFY   68 (255)
T ss_dssp             CEEEEECSTTSSHHHHHTTTTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHHhcC
Confidence            379999999999999999988753

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=93.62  E-value=0.016  Score=52.89  Aligned_cols=24  Identities=25%  Similarity=0.339  Sum_probs=21.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC
Q 006490          425 RCLLFGPQNAGKSALLNSFLERPF  448 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~~~  448 (643)
                      -++|+|++|||||||++.+.|-..
T Consensus        34 ~~~liGpsGaGKSTLl~~i~Gl~~   57 (239)
T d1v43a3          34 FLVLLGPSGCGKTTTLRMIAGLEE   57 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCChHHHHHHHHHcCCC
Confidence            589999999999999999998653

>d2mysc_ a.39.1.5 (C:) Myosin Regulatory Chain {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Myosin Regulatory Chain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=93.58  E-value=0.098  Score=43.43  Aligned_cols=135  Identities=17%  Similarity=0.256  Sum_probs=83.9

Q ss_pred             HHHHhhhhhcCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhccCCcCCCCcChhhHHHHHHHHHHcCCccc
Q 006490          196 RALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLET  275 (643)
Q Consensus       196 ~~l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~  275 (643)
                      +-++.+|...|.+.+|.++..|+..... .++...+..++..+.....   ........++++.|..+........    
T Consensus         4 eelke~F~~~D~d~~G~I~~~el~~~l~-~lg~~~~~~e~~~~~~~~~---~d~~~~g~i~~~eF~~~~~~~~~~~----   75 (145)
T d2mysc_           4 DDFKEAFLLFDRTGDAKITASQVGDIAR-ALGQNPTNAEINKILGNPS---KEEMNAAAITFEEFLPMLQAAANNK----   75 (145)
T ss_pred             HHHHHHHHHHcCCCCCeECHHHHHHHHH-HhhhcchhhhhHHHHHHHh---hcccccCccchhHHHHHHhhhhhcc----
Confidence            3467788999999999999999876543 3455566666555544432   2333344688888887654222100    


Q ss_pred             hhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCChhHHhhhhccCCCCCCCCC--
Q 006490          276 TWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEA--  353 (643)
Q Consensus       276 ~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~--  353 (643)
                                                         ......-++.+|+.||.|++|.++..|+..++.... .|....  
T Consensus        76 -----------------------------------~~~~~~~l~~aF~~~D~d~~G~I~~~el~~~l~~~g-~~~~~~e~  119 (145)
T d2mysc_          76 -----------------------------------DQGTFEDFVEGLRVFDKEGNGTVMGAELRHVLATLG-EKMTEEEV  119 (145)
T ss_pred             -----------------------------------ccchHHHHHHHHHHhhcCCCCEEcHHHHHHHHHHhC-CCCCHHHH
Confidence                                               011223477899999999999999999999998642 222211  


Q ss_pred             -CCCCCccccCCcccchhhhhhh
Q 006490          354 -PYKDAAETTALGNLTLKGFVSK  375 (643)
Q Consensus       354 -~~~~~~~~~~~~~~~~~~~~~~  375 (643)
                       ..-. ...+.+|.|+...|+..
T Consensus       120 ~~l~~-~~~d~dG~I~y~eF~~~  141 (145)
T d2mysc_         120 EELMK-GQEDSNGCINYEAFVKH  141 (145)
T ss_pred             HHHHh-hcCCCCCeEEHHHHHHH
Confidence             1111 12355666776666543

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=93.57  E-value=0.016  Score=50.58  Aligned_cols=20  Identities=10%  Similarity=0.217  Sum_probs=18.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 006490          426 CLLFGPQNAGKSALLNSFLE  445 (643)
Q Consensus       426 i~ivG~~nvGKSSLln~l~~  445 (643)
                      |+|.|.|||||||+++.|..
T Consensus         4 I~i~G~~GsGKsT~~~~L~~   23 (190)
T d1khta_           4 VVVTGVPGVGSTTSSQLAMD   23 (190)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999853

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.54  E-value=0.014  Score=50.27  Aligned_cols=22  Identities=23%  Similarity=0.413  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 006490          425 RCLLFGPQNAGKSALLNSFLER  446 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~  446 (643)
                      +|+++|.|||||||+.+.|...
T Consensus         3 ~IvliG~~G~GKSTig~~La~~   24 (165)
T d2iyva1           3 KAVLVGLPGSGKSTIGRRLAKA   24 (165)
T ss_dssp             SEEEECSTTSSHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999988643

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.54  E-value=0.023  Score=50.01  Aligned_cols=24  Identities=17%  Similarity=0.206  Sum_probs=21.1

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhc
Q 006490           11 TGVRVVVVGDRGTGKSSLIAAAAT   34 (643)
Q Consensus        11 ~~~kI~lvG~~~vGKSsL~n~l~~   34 (643)
                      ..+-|+|.|++|||||||+++|..
T Consensus        21 ~~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          21 GRLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            456789999999999999999874

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.54  E-value=0.02  Score=49.65  Aligned_cols=25  Identities=28%  Similarity=0.290  Sum_probs=21.4

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhc
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLE  445 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~  445 (643)
                      ..+.-|+++|.|||||||+..++..
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3455799999999999999999865

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.53  E-value=0.017  Score=50.59  Aligned_cols=21  Identities=38%  Similarity=0.665  Sum_probs=19.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 006490          426 CLLFGPQNAGKSALLNSFLER  446 (643)
Q Consensus       426 i~ivG~~nvGKSSLln~l~~~  446 (643)
                      |+|+|++|||||||++.|...
T Consensus         5 ivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            789999999999999999865

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=93.48  E-value=0.018  Score=49.82  Aligned_cols=21  Identities=29%  Similarity=0.417  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 006490          426 CLLFGPQNAGKSALLNSFLER  446 (643)
Q Consensus       426 i~ivG~~nvGKSSLln~l~~~  446 (643)
                      |+|.|+|||||||+.+.|...
T Consensus         7 I~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           7 LLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             EEEEECTTSCHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999999764

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.47  E-value=0.01  Score=52.44  Aligned_cols=24  Identities=29%  Similarity=0.440  Sum_probs=20.9

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhc
Q 006490           11 TGVRVVVVGDRGTGKSSLIAAAAT   34 (643)
Q Consensus        11 ~~~kI~lvG~~~vGKSsL~n~l~~   34 (643)
                      +.+.|.|+|.|||||||+.+.|..
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456788999999999999999865

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.44  E-value=0.022  Score=50.18  Aligned_cols=26  Identities=19%  Similarity=0.211  Sum_probs=22.4

Q ss_pred             cCceEEEEEEcCCCCCHHHHHHHHhc
Q 006490          420 ERNVFRCLLFGPQNAGKSALLNSFLE  445 (643)
Q Consensus       420 ~~~~~ki~ivG~~nvGKSSLln~l~~  445 (643)
                      ...++-|+|.|.+|||||||.++|..
T Consensus        19 ~~~~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          19 TAGRLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            34567799999999999999999974

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=93.44  E-value=0.024  Score=52.82  Aligned_cols=22  Identities=32%  Similarity=0.454  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 006490          425 RCLLFGPQNAGKSALLNSFLER  446 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~  446 (643)
                      .+++||+||||||+++..|...
T Consensus        41 n~lLVG~~GvGKTalv~~la~r   62 (268)
T d1r6bx2          41 NPLLVGESGVGKTAIAEGLAWR   62 (268)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEECCCCCcHHHHHHHHHHH
Confidence            6899999999999999998764

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.36  E-value=0.018  Score=51.00  Aligned_cols=23  Identities=26%  Similarity=0.420  Sum_probs=20.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcC
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATE   35 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~   35 (643)
                      --|+|+|+|||||||++.+|...
T Consensus         9 ~iI~l~G~pGSGKsT~a~~La~~   31 (194)
T d3adka_           9 KIIFVVGGPGSGKGTQCEKIVQK   31 (194)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            34889999999999999999764

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=93.36  E-value=0.014  Score=52.96  Aligned_cols=23  Identities=26%  Similarity=0.444  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 006490          425 RCLLFGPQNAGKSALLNSFLERP  447 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~~  447 (643)
                      -++|+|++|||||||++.+.|-.
T Consensus        28 ~~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          28 YFVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Confidence            48999999999999999999964

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=93.33  E-value=0.018  Score=52.67  Aligned_cols=23  Identities=26%  Similarity=0.245  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 006490          425 RCLLFGPQNAGKSALLNSFLERP  447 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~~  447 (643)
                      -++|+|++|||||||++.+.|-.
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~Gl~   55 (240)
T d3dhwc1          33 IYGVIGASGAGKSTLIRCVNLLE   55 (240)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHcCCc
Confidence            58999999999999999999864

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=93.27  E-value=0.013  Score=53.15  Aligned_cols=24  Identities=25%  Similarity=0.373  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCC
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATES   36 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~~   36 (643)
                      =-++|+|+.|||||||++.+.+-.
T Consensus        27 e~~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          27 EYFVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             CEEEEECCCTHHHHHHHHHHHTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCc
Confidence            358999999999999999999854

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.25  E-value=0.02  Score=49.97  Aligned_cols=21  Identities=19%  Similarity=0.581  Sum_probs=19.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 006490          426 CLLFGPQNAGKSALLNSFLER  446 (643)
Q Consensus       426 i~ivG~~nvGKSSLln~l~~~  446 (643)
                      |+|+|++||||+||+++|+..
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            899999999999999999864

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=93.22  E-value=0.021  Score=52.26  Aligned_cols=24  Identities=21%  Similarity=0.361  Sum_probs=21.0

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCC
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATES   36 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~~   36 (643)
                      =.++|+|+.|+|||||++.+.+-.
T Consensus        30 e~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          30 EFMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCChHHHHHHHHhcCC
Confidence            358999999999999999998753

>d1wdcc_ a.39.1.5 (C:) Myosin Regulatory Chain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Myosin Regulatory Chain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=93.22  E-value=0.098  Score=43.90  Aligned_cols=105  Identities=18%  Similarity=0.301  Sum_probs=70.8

Q ss_pred             HHHHHHhhhhhcC--CCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhccCCcCCCCcChhhHHHHHHHHHHcC
Q 006490          194 CVRALKRIFIICD--HDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKG  271 (643)
Q Consensus       194 ~~~~l~~~~~~~~--~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~  271 (643)
                      -.+.++.+|...|  .+.+|.++..++..... +.+...+..++..+.    ..  ..-....++++.|+.+...+....
T Consensus         5 qi~~l~~~F~~fD~~~~~dG~I~~~el~~~l~-~lG~~~t~~e~~~~~----~~--~~~~~~~i~~~eFl~~~~~~~~~~   77 (152)
T d1wdcc_           5 EIDDLKDVFELFDFWDGRDGAVDAFKLGDVCR-CLGINPRNEDVFAVG----GT--HKMGEKSLPFEEFLPAYEGLMDCE   77 (152)
T ss_dssp             HHHHHHHHHHHHHHHTCSSSCEEGGGHHHHHH-HTTCCCCHHHHHHTT----CC--SSTTSCEECHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHCcCCCCCCeECHHHHHHHHH-HhccCccHhhhhhhh----hh--hccccccccccccccccccccccc
Confidence            3445677777766  36789999999876653 456666776665432    11  222244599999998765332111


Q ss_pred             CccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCChhHHhhhhccC
Q 006490          272 RLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTA  345 (643)
Q Consensus       272 ~~~~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~~~~~  345 (643)
                                                              .....-+..+|+.||.|++|.++..++..++...
T Consensus        78 ----------------------------------------~~~~~~l~~aF~~~D~~~~G~I~~~el~~~l~~~  111 (152)
T d1wdcc_          78 ----------------------------------------QGTFADYMEAFKTFDREGQGFISGAELRHVLTAL  111 (152)
T ss_dssp             ----------------------------------------CCCHHHHHHHHHTTCSSSSSEEEHHHHHHHHHHS
T ss_pred             ----------------------------------------hhHHHhhhhhhhccccccCccchHHHHHHHHHHc
Confidence                                                    0113457889999999999999999999998765

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=93.21  E-value=0.021  Score=52.21  Aligned_cols=23  Identities=26%  Similarity=0.433  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 006490          425 RCLLFGPQNAGKSALLNSFLERP  447 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~~  447 (643)
                      .++|+|++|||||||++.+.|-.
T Consensus        31 ~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          31 FMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            58999999999999999999864

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=93.20  E-value=0.013  Score=54.36  Aligned_cols=26  Identities=38%  Similarity=0.466  Sum_probs=21.5

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcC
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATE   35 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~   35 (643)
                      ++.=+|+|+|+.|+|||||++.+.+-
T Consensus        42 ~~Ge~vaivG~sGsGKSTLl~ll~gl   67 (255)
T d2hyda1          42 EKGETVAFVGMSGGGKSTLINLIPRF   67 (255)
T ss_dssp             CTTCEEEEECSTTSSHHHHHTTTTTS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHHhc
Confidence            34458999999999999999877663

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=93.17  E-value=0.02  Score=52.41  Aligned_cols=24  Identities=38%  Similarity=0.490  Sum_probs=21.0

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcC
Q 006490           12 GVRVVVVGDRGTGKSSLIAAAATE   35 (643)
Q Consensus        12 ~~kI~lvG~~~vGKSsL~n~l~~~   35 (643)
                      .=-++|+|+.|||||||++.+.+-
T Consensus        31 Ge~~~iiG~sGsGKSTLl~~i~Gl   54 (240)
T d3dhwc1          31 GQIYGVIGASGAGKSTLIRCVNLL   54 (240)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHcCC
Confidence            345899999999999999999874

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=93.16  E-value=0.02  Score=52.50  Aligned_cols=23  Identities=30%  Similarity=0.497  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 006490           14 RVVVVGDRGTGKSSLIAAAATES   36 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~~~   36 (643)
                      -++|+|+.|+|||||++.+.+-.
T Consensus        34 i~~liGpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          34 IVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            58999999999999999998853

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=93.12  E-value=0.028  Score=52.36  Aligned_cols=26  Identities=23%  Similarity=0.372  Sum_probs=21.7

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCC
Q 006490           11 TGVRVVVVGDRGTGKSSLIAAAATES   36 (643)
Q Consensus        11 ~~~kI~lvG~~~vGKSsL~n~l~~~~   36 (643)
                      ..-+++|||+||||||+++..|...-
T Consensus        38 ~k~n~lLVG~~GvGKTalv~~la~ri   63 (268)
T d1r6bx2          38 RKNNPLLVGESGVGKTAIAEGLAWRI   63 (268)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ccCCcEEECCCCCcHHHHHHHHHHHH
Confidence            34579999999999999999887643

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=93.11  E-value=0.022  Score=52.32  Aligned_cols=24  Identities=25%  Similarity=0.281  Sum_probs=21.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC
Q 006490          425 RCLLFGPQNAGKSALLNSFLERPF  448 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~~~  448 (643)
                      -++|+|+.|+|||||++.+.|-..
T Consensus        34 i~~liGpnGaGKSTl~~~i~Gl~~   57 (240)
T d1ji0a_          34 IVTLIGANGAGKTTTLSAIAGLVR   57 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCC
Confidence            589999999999999999999653

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=93.08  E-value=0.02  Score=49.13  Aligned_cols=22  Identities=23%  Similarity=0.392  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 006490          425 RCLLFGPQNAGKSALLNSFLER  446 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~  446 (643)
                      +|+++|.|||||||+...|...
T Consensus         2 ~I~liG~~GsGKsTi~k~La~~   23 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAKD   23 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999988653

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=93.08  E-value=0.022  Score=52.22  Aligned_cols=25  Identities=24%  Similarity=0.381  Sum_probs=21.6

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCC
Q 006490           12 GVRVVVVGDRGTGKSSLIAAAATES   36 (643)
Q Consensus        12 ~~kI~lvG~~~vGKSsL~n~l~~~~   36 (643)
                      .=-++|+|+.|+|||||++.+++-.
T Consensus        28 Gei~glvG~nGaGKSTLl~~l~G~~   52 (238)
T d1vpla_          28 GEIFGLIGPNGAGKTTTLRIISTLI   52 (238)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3358899999999999999998864

>d2opoa1 a.39.1.10 (A:6-86) Polcalcin Che a 3 {Pigweed (Chenopodium album) [TaxId: 3559]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Polcalcin
domain: Polcalcin Che a 3
species: Pigweed (Chenopodium album) [TaxId: 3559]

Probab=93.06  E-value=0.007  Score=45.34  Aligned_cols=65  Identities=18%  Similarity=0.232  Sum_probs=47.2

Q ss_pred             hhHHHHHHHhhhhhcCCCCCCCChhHHhhhhccCCCCC-CCCCCCCCCccccCCcccchhhhhhhh
Q 006490          312 SEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESP-WDEAPYKDAAETTALGNLTLKGFVSKW  376 (643)
Q Consensus       312 ~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~w  376 (643)
                      ++-..-++++|+.||.|++|.++..|+..++.....++ .....+......+.+|.|+...|+...
T Consensus         2 ~ee~~e~~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~ei~~~~~~~D~d~~G~I~~~EF~~~~   67 (81)
T d2opoa1           2 PQDIADRERIFKRFDTNGDGKISSSELGDALKTLGSVTPDEVRRMMAEIDTDGDGFISFDEFTDFA   67 (81)
T ss_dssp             HHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHTTTTCCHHHHHHHHHHHCTTCSSEECHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHhhcCCHHHHHHHHHHhCCCCCCeEeHHHHHHHH
Confidence            45567789999999999999999999999888764322 111122233556788889998888643

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=93.05  E-value=0.022  Score=50.99  Aligned_cols=22  Identities=32%  Similarity=0.590  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 006490          425 RCLLFGPQNAGKSALLNSFLER  446 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~  446 (643)
                      -|+|+|++|||||||+++|+..
T Consensus         4 livi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           4 LYIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            4789999999999999999864

>d1k94a_ a.39.1.8 (A:) Grancalcin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Grancalcin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.03  E-value=0.052  Score=46.57  Aligned_cols=117  Identities=16%  Similarity=0.182  Sum_probs=72.4

Q ss_pred             CCCCCCChHHHHHHhhhhc-CCCCCHHHHHHHHHHHHhhccCCcCCCCcChhhHHHHHHHHHHcCCccchhHHHhhccCC
Q 006490          208 DMDGALNDAELNEFQVKCF-NAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYG  286 (643)
Q Consensus       208 ~~~~~l~~~el~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~w~~l~~~~~~  286 (643)
                      +.++.++.+|+......+. +........+.++..+...-.++  +.-+.++.|..++..                    
T Consensus        11 ~~dG~I~~~EL~~~L~~~g~~~~~~~~s~~~~~~li~~~D~~~--~G~i~~~EF~~l~~~--------------------   68 (165)
T d1k94a_          11 GQDGEVDAEELQRCLTQSGINGTYSPFSLETCRIMIAMLDRDH--TGKMGFNAFKELWAA--------------------   68 (165)
T ss_dssp             GGGTSBCHHHHHHHHHHHTTTTTSCCCCHHHHHHHHHHHCTTC--SSCBCHHHHHHHHHH--------------------
T ss_pred             CCCCCCCHHHHHHHHHHcCCCCCcccCCHHHHHHHHHHhCCCC--CCcCcHHHHHHHhhc--------------------
Confidence            4688899999876665542 22222223455555555543222  334899999887541                    


Q ss_pred             CCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCChhHHhhhhccCCCCCCCCCCCCCC-ccccCCc
Q 006490          287 DDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDA-AETTALG  365 (643)
Q Consensus       287 ~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~  365 (643)
                                                  .+.++.+|+.||.|++|.++.+|+..++..... ++........ ...+.+|
T Consensus        69 ----------------------------~~~~~~~F~~fD~d~sG~I~~~El~~~l~~~G~-~l~~~~~~~l~~~~d~~g  119 (165)
T d1k94a_          69 ----------------------------LNAWKENFMTVDQDGSGTVEHHELRQAIGLMGY-RLSPQTLTTIVKRYSKNG  119 (165)
T ss_dssp             ----------------------------HHHHHHHHHHHCTTCCSBCCHHHHHHHHHHTTC-CCCHHHHHHHHHHHCBTT
T ss_pred             ----------------------------cchhHHHHHHhCCCCCCeEcHHHHHHHHHHhhh-cCCHHHHHHHHHHcCCCC
Confidence                                        245678999999999999999999998886633 2221111110 1124567


Q ss_pred             ccchhhhhhh
Q 006490          366 NLTLKGFVSK  375 (643)
Q Consensus       366 ~~~~~~~~~~  375 (643)
                      .++...|++.
T Consensus       120 ~i~~~eFi~~  129 (165)
T d1k94a_         120 RIFFDDYVAC  129 (165)
T ss_dssp             BCBHHHHHHH
T ss_pred             cCcHHHHHHH
Confidence            7887777653

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=93.03  E-value=0.028  Score=52.43  Aligned_cols=23  Identities=35%  Similarity=0.508  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 006490           14 RVVVVGDRGTGKSSLIAAAATES   36 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~~~   36 (643)
                      -|+|.|+||||||||+.++.+.-
T Consensus        34 ~ilL~GpPGtGKT~la~~la~~~   56 (273)
T d1gvnb_          34 AFLLGGQPGSGKTSLRSAIFEET   56 (273)
T ss_dssp             EEEEECCTTSCTHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            48999999999999999998753

>d1lkja_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.01  E-value=0.1  Score=43.36  Aligned_cols=110  Identities=23%  Similarity=0.379  Sum_probs=74.5

Q ss_pred             chHHHHHHHHhhhhhcCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhccCCcCCCCcChhhHHHHHHHHHH
Q 006490          190 LKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIE  269 (643)
Q Consensus       190 ~~~~~~~~l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~  269 (643)
                      ++++....++.+|...|.+++|.++..|+...... .+...+...+..+..   .....+  ...++++.|........ 
T Consensus         4 ls~~~i~~l~~~F~~~D~d~~G~i~~~e~~~~l~~-~g~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~-   76 (146)
T d1lkja_           4 LTEEQIAEFKEAFALFDKDNNGSISSSELATVMRS-LGLSPSEAEVNDLMN---EIDVDG--NHQIEFSEFLALMSRQL-   76 (146)
T ss_dssp             CCHHHHHHHHHHHHHHCCSSSSEEEHHHHHHHHHH-HTCCCCHHHHHHHHH---HHCSSS--CCEEEHHHHHHHHHHHT-
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCcEeHHHHHHHHHh-cCCCCCHHHHHHHHH---HhccCC--cccccHHHHHHHHHHhh-
Confidence            34556677889999999999999999999765444 556666655554432   222222  33466677766543111 


Q ss_pred             cCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCChhHHhhhhccCC
Q 006490          270 KGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAP  346 (643)
Q Consensus       270 ~~~~~~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~~~~~~  346 (643)
                        ..                                      ....+-++.+|+.||.|++|.|+.+|+..++....
T Consensus        77 --~~--------------------------------------~~~~~~~~~aF~~~D~d~~G~I~~~el~~~l~~~g  113 (146)
T d1lkja_          77 --KS--------------------------------------NDSEQELLEAFKVFDKNGDGLISAAELKHVLTSIG  113 (146)
T ss_dssp             --CC--------------------------------------CCHHHHHHHHHHHHCSSSSCEEEHHHHHHHHHHHT
T ss_pred             --cc--------------------------------------ccHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcC
Confidence              00                                      01235678899999999999999999999998663

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=93.00  E-value=0.023  Score=48.79  Aligned_cols=22  Identities=27%  Similarity=0.424  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 006490          425 RCLLFGPQNAGKSALLNSFLER  446 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~  446 (643)
                      -++|+|.|||||||+.+.|...
T Consensus         8 iivl~G~~GsGKsT~a~~La~~   29 (171)
T d1knqa_           8 IYVLMGVSGSGKSAVASEVAHQ   29 (171)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4778999999999999999763

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=93.00  E-value=0.018  Score=52.66  Aligned_cols=22  Identities=41%  Similarity=0.516  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 006490          425 RCLLFGPQNAGKSALLNSFLER  446 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~  446 (643)
                      -++|+|+.|+|||||++.+.|-
T Consensus        27 i~~iiG~nGaGKSTLl~~l~Gl   48 (231)
T d1l7vc_          27 ILHLVGPNGAGKSTLLARMAGM   48 (231)
T ss_dssp             EEECBCCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            5899999999999999999984

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=92.99  E-value=0.029  Score=48.26  Aligned_cols=21  Identities=19%  Similarity=0.472  Sum_probs=18.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 006490           15 VVVVGDRGTGKSSLIAAAATE   35 (643)
Q Consensus        15 I~lvG~~~vGKSsL~n~l~~~   35 (643)
                      |+|.|.||+||||+.+.|...
T Consensus         6 I~l~G~~GsGKsTva~~L~~~   26 (178)
T d1qhxa_           6 IILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            667799999999999998764

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=92.96  E-value=0.018  Score=52.65  Aligned_cols=23  Identities=39%  Similarity=0.505  Sum_probs=20.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcC
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATE   35 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~   35 (643)
                      =-++|+|+.|+|||||++.+.+-
T Consensus        26 ei~~iiG~nGaGKSTLl~~l~Gl   48 (231)
T d1l7vc_          26 EILHLVGPNGAGKSTLLARMAGM   48 (231)
T ss_dssp             CEEECBCCTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCC
Confidence            35899999999999999999883

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=92.95  E-value=0.024  Score=51.98  Aligned_cols=24  Identities=29%  Similarity=0.264  Sum_probs=21.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC
Q 006490          425 RCLLFGPQNAGKSALLNSFLERPF  448 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~~~  448 (643)
                      -++|+|+.|+|||||++.+.|-..
T Consensus        30 i~glvG~nGaGKSTLl~~l~G~~~   53 (238)
T d1vpla_          30 IFGLIGPNGAGKTTTLRIISTLIK   53 (238)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            588999999999999999999753

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=92.88  E-value=0.022  Score=49.83  Aligned_cols=21  Identities=29%  Similarity=0.447  Sum_probs=17.7

Q ss_pred             EE-EEEcCCCCCHHHHHHHHhc
Q 006490          425 RC-LLFGPQNAGKSALLNSFLE  445 (643)
Q Consensus       425 ki-~ivG~~nvGKSSLln~l~~  445 (643)
                      || +|.|.+||||||+++.|..
T Consensus         2 kiivi~G~~GsGKTT~~~~La~   23 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            55 5679999999999999963

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.87  E-value=0.025  Score=49.99  Aligned_cols=21  Identities=43%  Similarity=0.759  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 006490          426 CLLFGPQNAGKSALLNSFLER  446 (643)
Q Consensus       426 i~ivG~~nvGKSSLln~l~~~  446 (643)
                      |+|+|++|||||||+++|+..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~   23 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQE   23 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999753

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=92.87  E-value=0.023  Score=52.14  Aligned_cols=22  Identities=32%  Similarity=0.555  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 006490           14 RVVVVGDRGTGKSSLIAAAATE   35 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~~   35 (643)
                      .+.+.|+||+||||+++.+.+.
T Consensus        37 ~~Ll~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          37 HLLLFGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999998764

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=92.68  E-value=0.027  Score=48.46  Aligned_cols=21  Identities=29%  Similarity=0.433  Sum_probs=18.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 006490          426 CLLFGPQNAGKSALLNSFLER  446 (643)
Q Consensus       426 i~ivG~~nvGKSSLln~l~~~  446 (643)
                      |+|.|.|||||||+.+.|...
T Consensus         6 I~l~G~~GsGKsTva~~L~~~   26 (178)
T d1qhxa_           6 IILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            667799999999999999874

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.56  E-value=0.029  Score=49.67  Aligned_cols=23  Identities=17%  Similarity=0.304  Sum_probs=20.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 006490          424 FRCLLFGPQNAGKSALLNSFLER  446 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~  446 (643)
                      --|+|+|+|||||||+...|...
T Consensus         9 ~iI~i~GppGSGKsT~a~~La~~   31 (196)
T d1ukza_           9 SVIFVLGGPGAGKGTQCEKLVKD   31 (196)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            45999999999999999999764

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=92.51  E-value=0.029  Score=51.99  Aligned_cols=23  Identities=22%  Similarity=0.258  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 006490          425 RCLLFGPQNAGKSALLNSFLERP  447 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~~  447 (643)
                      .++|+|+.|||||||++.+.|-.
T Consensus        30 i~~iiG~sGsGKSTLl~~i~Gl~   52 (258)
T d1b0ua_          30 VISIIGSSGSGKSTFLRCINFLE   52 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCc
Confidence            58999999999999999999864

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=92.49  E-value=0.029  Score=52.00  Aligned_cols=24  Identities=25%  Similarity=0.516  Sum_probs=21.1

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcC
Q 006490           12 GVRVVVVGDRGTGKSSLIAAAATE   35 (643)
Q Consensus        12 ~~kI~lvG~~~vGKSsL~n~l~~~   35 (643)
                      .=.++|+|+.|+|||||++.+.+-
T Consensus        28 GEi~~iiG~sGsGKSTLl~~i~Gl   51 (258)
T d1b0ua_          28 GDVISIIGSSGSGKSTFLRCINFL   51 (258)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCcHHHHHHHHHcC
Confidence            346899999999999999999874

>d1jfja_ a.39.1.5 (A:) EHCABP {Entamoeba (Entamoeba histolytica) [TaxId: 5759]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: EHCABP
species: Entamoeba (Entamoeba histolytica) [TaxId: 5759]

Probab=92.44  E-value=0.095  Score=42.61  Aligned_cols=130  Identities=21%  Similarity=0.252  Sum_probs=81.0

Q ss_pred             HHhhhhhcCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhccCCcCCCCcChhhHHHHHHHHHHcCCccchh
Q 006490          198 LKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTW  277 (643)
Q Consensus       198 l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~w  277 (643)
                      .+.+|...|.+.+|.++..|+...... .+......+++.+...+   ..++  +..++++.|+.+..            
T Consensus         2 ae~~F~~~D~d~dG~is~~E~~~~l~~-~~~~~~~~~~~~~~~~~---D~~~--~g~i~~~Ef~~~~~------------   63 (134)
T d1jfja_           2 AEALFKEIDVNGDGAVSYEEVKAFVSK-KRAIKNEQLLQLIFKSI---DADG--NGEIDQNEFAKFYG------------   63 (134)
T ss_dssp             HHHHHHHHCTTCSSEEEHHHHHHHHHT-TCCSSHHHHHHHHHHHH---CSSC--CSEEEHHHHHHHTT------------
T ss_pred             HHHHHHHHcCCCcCCCcHHHHHHHHHH-cCCCCCHHHHHHHHHHh---hhcc--cccccccccccccc------------
Confidence            467789999999999999999766543 34555555555544433   2222  33488888877522            


Q ss_pred             HHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCChhHHhhhhccCCCCCCCCCCCCC
Q 006490          278 AVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKD  357 (643)
Q Consensus       278 ~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~~~~  357 (643)
                                           .  ..+    .........++.+|+.+|.|++|.++.+|+..++..... + .......
T Consensus        64 ---------------------~--~~~----~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~~~~~~~-~-~~~~~~~  114 (134)
T d1jfja_          64 ---------------------S--IQG----QDLSDDKIGLKVLYKLMDVDGDGKLTKEEVTSFFKKHGI-E-KVAEQVM  114 (134)
T ss_dssp             ---------------------C--SSC----CSSHHHHHHHHHHHHHHCCSSSSEEEHHHHHHHHTTTTC-H-HHHHHHH
T ss_pred             ---------------------c--ccc----cccccccccccccccccccccCCcccHHHHHHHHHhcCc-H-HHHHHHH
Confidence                                 0  000    012345567888999999999999999999988875421 0 0000011


Q ss_pred             CccccCCcccchhhhhh
Q 006490          358 AAETTALGNLTLKGFVS  374 (643)
Q Consensus       358 ~~~~~~~~~~~~~~~~~  374 (643)
                      ....+.+|.|+...|+.
T Consensus       115 ~~D~d~dG~is~~EF~~  131 (134)
T d1jfja_         115 KADANGDGYITLEEFLE  131 (134)
T ss_dssp             HHHCSSSSEEEHHHHHH
T ss_pred             HHCCCCCCCCCHHHHHH
Confidence            23346677777766654

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.42  E-value=0.037  Score=49.68  Aligned_cols=23  Identities=22%  Similarity=0.291  Sum_probs=20.9

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhc
Q 006490          423 VFRCLLFGPQNAGKSALLNSFLE  445 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~~  445 (643)
                      ++-|+|.|.+|||||||.+.|..
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            67899999999999999998864

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=92.36  E-value=0.028  Score=51.42  Aligned_cols=22  Identities=36%  Similarity=0.593  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 006490           14 RVVVVGDRGTGKSSLIAAAATE   35 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~~   35 (643)
                      .+.+.|+||+||||+++.+...
T Consensus        37 ~~L~~GPpGtGKT~lA~~la~~   58 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLAHIIASE   58 (238)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHhc
Confidence            4899999999999999988764

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=92.36  E-value=0.031  Score=51.73  Aligned_cols=24  Identities=33%  Similarity=0.473  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC
Q 006490          425 RCLLFGPQNAGKSALLNSFLERPF  448 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~~~  448 (643)
                      -++|+|+.|+|||||++.+.|-..
T Consensus        32 i~~liG~nGaGKSTLl~~i~Gl~~   55 (254)
T d1g6ha_          32 VTLIIGPNGSGKSTLINVITGFLK   55 (254)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHHCCCc
Confidence            479999999999999999999743

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=92.35  E-value=0.03  Score=51.83  Aligned_cols=23  Identities=30%  Similarity=0.498  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 006490           14 RVVVVGDRGTGKSSLIAAAATES   36 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~~~   36 (643)
                      -++|+|+.|+|||||++.+++-.
T Consensus        32 i~~liG~nGaGKSTLl~~i~Gl~   54 (254)
T d1g6ha_          32 VTLIIGPNGSGKSTLINVITGFL   54 (254)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Confidence            48999999999999999998863

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=92.30  E-value=0.019  Score=52.47  Aligned_cols=23  Identities=26%  Similarity=0.476  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 006490          425 RCLLFGPQNAGKSALLNSFLERP  447 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~~  447 (643)
                      .++|+|++|||||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          33 RFGILGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCc
Confidence            68999999999999999999964

>d2pq3a1 a.39.1.5 (A:3-75) Calmodulin {Rattus norvegicus [TaxId: 10116]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Rattus norvegicus [TaxId: 10116]

Probab=92.25  E-value=0.0085  Score=43.83  Aligned_cols=68  Identities=19%  Similarity=0.405  Sum_probs=48.1

Q ss_pred             ecchhHHHHHHHhhhhhcCCCCCCCChhHHhhhhccCCCCC--CCCCCCCCCccccCCcccchhhhhhhh
Q 006490          309 ELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESP--WDEAPYKDAAETTALGNLTLKGFVSKW  376 (643)
Q Consensus       309 ~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~p--~~~~~~~~~~~~~~~~~~~~~~~~~~w  376 (643)
                      +||++=..-++.+|..||.|++|.++..|+..++...-..+  ......-.....+.+|.|+...|+..+
T Consensus         1 qLs~eei~el~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~s~~~~~~~~~~~D~d~~g~I~f~eF~~~m   70 (73)
T d2pq3a1           1 QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMM   70 (73)
T ss_dssp             CCCHHHHHHHHHHHHHTCTTSSSEEEGGGHHHHHHHTTCCCCHHHHHHHHHHHCTTCSSEEEHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHHcCCCCceEeHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHH
Confidence            47788888999999999999999999999999887753222  111111122345677788888776643

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=92.13  E-value=0.042  Score=51.13  Aligned_cols=25  Identities=28%  Similarity=0.380  Sum_probs=21.2

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCC
Q 006490          423 VFRCLLFGPQNAGKSALLNSFLERP  447 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~~~~  447 (643)
                      +.-|++.|+||+|||||+.++.+.-
T Consensus        32 P~~ilL~GpPGtGKT~la~~la~~~   56 (273)
T d1gvnb_          32 PTAFLLGGQPGSGKTSLRSAIFEET   56 (273)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHh
Confidence            3448999999999999999998743

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=92.09  E-value=0.018  Score=52.60  Aligned_cols=25  Identities=28%  Similarity=0.509  Sum_probs=21.7

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCC
Q 006490           12 GVRVVVVGDRGTGKSSLIAAAATES   36 (643)
Q Consensus        12 ~~kI~lvG~~~vGKSsL~n~l~~~~   36 (643)
                      .=.++|+|+.|+|||||++.+.+-.
T Consensus        31 Ge~~~iiG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          31 GERFGILGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             TCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHHcCc
Confidence            3468999999999999999998853

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=92.07  E-value=0.036  Score=47.79  Aligned_cols=20  Identities=10%  Similarity=0.326  Sum_probs=18.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 006490          426 CLLFGPQNAGKSALLNSFLE  445 (643)
Q Consensus       426 i~ivG~~nvGKSSLln~l~~  445 (643)
                      |+++|.|||||||+.+.|..
T Consensus         5 Iil~G~~GsGKSTia~~LA~   24 (170)
T d1e6ca_           5 IFMVGARGCGMTTVGRELAR   24 (170)
T ss_dssp             EEEESCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999864

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.03  E-value=0.034  Score=49.15  Aligned_cols=22  Identities=14%  Similarity=0.344  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 006490          425 RCLLFGPQNAGKSALLNSFLER  446 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~  446 (643)
                      -|+|+|+|||||||+..+|...
T Consensus        10 iI~l~G~pGSGKsT~a~~La~~   31 (194)
T d3adka_          10 IIFVVGGPGSGKGTQCEKIVQK   31 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4889999999999999999764

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.90  E-value=0.042  Score=49.25  Aligned_cols=24  Identities=29%  Similarity=0.285  Sum_probs=20.9

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcC
Q 006490           12 GVRVVVVGDRGTGKSSLIAAAATE   35 (643)
Q Consensus        12 ~~kI~lvG~~~vGKSsL~n~l~~~   35 (643)
                      .+-|+|.|.+|+|||||.++|...
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~~   25 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQL   25 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHH
Confidence            467999999999999999988653

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=91.85  E-value=0.039  Score=48.75  Aligned_cols=28  Identities=18%  Similarity=0.349  Sum_probs=23.5

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHhcC
Q 006490            8 SSRTGVRVVVVGDRGTGKSSLIAAAATE   35 (643)
Q Consensus         8 ~~~~~~kI~lvG~~~vGKSsL~n~l~~~   35 (643)
                      ...+.+-|+|-|..||||||+++.|...
T Consensus         5 ~~~kp~~I~ieG~~GsGKTTl~~~L~~~   32 (197)
T d2vp4a1           5 EGTQPFTVLIEGNIGSGKTTYLNHFEKY   32 (197)
T ss_dssp             TTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence            3456678999999999999999988753

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=91.79  E-value=0.047  Score=50.28  Aligned_cols=24  Identities=38%  Similarity=0.441  Sum_probs=21.0

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcC
Q 006490           12 GVRVVVVGDRGTGKSSLIAAAATE   35 (643)
Q Consensus        12 ~~kI~lvG~~~vGKSsL~n~l~~~   35 (643)
                      ...|.|.|+||||||+|++.+.+.
T Consensus        40 ~~~vLL~GppGtGKT~la~alA~~   63 (246)
T d1d2na_          40 LVSVLLEGPPHSGKTALAAKIAEE   63 (246)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECcCCCCHHHHHHHHhhc
Confidence            346999999999999999999763

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=91.77  E-value=0.045  Score=48.04  Aligned_cols=22  Identities=27%  Similarity=0.564  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 006490          425 RCLLFGPQNAGKSALLNSFLER  446 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~  446 (643)
                      .+++||+||||||+++..|...
T Consensus        45 n~lLvG~pGVGKTalv~~LA~r   66 (195)
T d1jbka_          45 NPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEecCCcccHHHHHHHHHH
Confidence            6899999999999999988764

>d1avsa_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=91.74  E-value=0.014  Score=43.56  Aligned_cols=66  Identities=17%  Similarity=0.367  Sum_probs=45.7

Q ss_pred             ecchhHHHHHHHhhhhhcCCCCCCCChhHHhhhhccCCCCC--CCCCCCCCCccccCCcccchhhhhh
Q 006490          309 ELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESP--WDEAPYKDAAETTALGNLTLKGFVS  374 (643)
Q Consensus       309 ~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~p--~~~~~~~~~~~~~~~~~~~~~~~~~  374 (643)
                      .||..=..-|+..|+.||.|++|.++..|+..++......+  .....+......+.+|.|+...|+.
T Consensus         7 ~Lt~~~i~el~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~s~~e~~~~~~~~D~d~~g~I~~~eF~~   74 (81)
T d1avsa_           7 FLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLV   74 (81)
T ss_dssp             HBCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHHHCTTCCSSEEHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHcCCCCCeEchhHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHH
Confidence            46777777899999999999999999999999998753222  1111112224456667777766654

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.74  E-value=0.065  Score=49.26  Aligned_cols=24  Identities=25%  Similarity=0.329  Sum_probs=21.2

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCC
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATES   36 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~~   36 (643)
                      -.++|.|+||+||||++..++..-
T Consensus        53 ~~lll~GPpG~GKTt~a~~la~~~   76 (253)
T d1sxja2          53 RAAMLYGPPGIGKTTAAHLVAQEL   76 (253)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHH
Confidence            369999999999999999998754

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=91.68  E-value=0.043  Score=49.43  Aligned_cols=24  Identities=21%  Similarity=0.382  Sum_probs=21.1

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcC
Q 006490          423 VFRCLLFGPQNAGKSALLNSFLER  446 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~~~  446 (643)
                      .++|+|-|+|||||||....|...
T Consensus         3 ~i~IaIdGp~GsGKgT~ak~La~~   26 (223)
T d1q3ta_           3 TIQIAIDGPASSGKSTVAKIIAKD   26 (223)
T ss_dssp             CCEEEEECSSCSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            467999999999999999999853

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=91.65  E-value=0.038  Score=52.90  Aligned_cols=23  Identities=22%  Similarity=0.455  Sum_probs=20.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcC
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATE   35 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~   35 (643)
                      -.|.++||||||||.|++++...
T Consensus        50 ~~iLl~GPpG~GKT~lAkalA~~   72 (309)
T d1ofha_          50 KNILMIGPTGVGKTEIARRLAKL   72 (309)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHhhc
Confidence            45899999999999999999764

>d2pq3a1 a.39.1.5 (A:3-75) Calmodulin {Rattus norvegicus [TaxId: 10116]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Rattus norvegicus [TaxId: 10116]

Probab=91.61  E-value=0.13  Score=37.13  Aligned_cols=32  Identities=25%  Similarity=0.422  Sum_probs=24.9

Q ss_pred             hHHHHHHHHhhhhhcCCCCCCCCChHHHHHHh
Q 006490          191 KPRCVRALKRIFIICDHDMDGALNDAELNEFQ  222 (643)
Q Consensus       191 ~~~~~~~l~~~~~~~~~~~~~~l~~~el~~~~  222 (643)
                      +++-...++.+|...|.+.+|.++..++....
T Consensus         3 s~eei~el~~~F~~~D~d~~G~I~~~el~~~l   34 (73)
T d2pq3a1           3 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVM   34 (73)
T ss_dssp             CHHHHHHHHHHHHHTCTTSSSEEEGGGHHHHH
T ss_pred             CHHHHHHHHHHHHHHcCCCCceEeHHHHHHHH
Confidence            44556678888999999999999998876543

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.60  E-value=0.16  Score=46.33  Aligned_cols=22  Identities=36%  Similarity=0.655  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 006490          425 RCLLFGPQNAGKSALLNSFLER  446 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~  446 (643)
                      .+++.|+||+||||++..+...
T Consensus        35 ~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          35 HLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHh
Confidence            4899999999999999998764

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=91.44  E-value=0.041  Score=50.30  Aligned_cols=23  Identities=35%  Similarity=0.564  Sum_probs=20.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 006490          424 FRCLLFGPQNAGKSALLNSFLER  446 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~  446 (643)
                      ..+++.|+||+||||+++.+.+.
T Consensus        36 ~~~Ll~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          36 EHLLLFGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            34889999999999999999864

>d1qxpa2 a.39.1.8 (A:515-702) Calpain large subunit, C-terminal domain (domain IV) {Rat (Rattus norvegicus), mu-type [TaxId: 10116]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Calpain large subunit, C-terminal domain (domain IV)
species: Rat (Rattus norvegicus), mu-type [TaxId: 10116]

Probab=91.34  E-value=0.098  Score=45.80  Aligned_cols=130  Identities=18%  Similarity=0.173  Sum_probs=71.6

Q ss_pred             HHHHHhhhhhcCCCCCCCCChHHHHHHhhhhcCC----CCCHHHHHHHHHHHHhhccCCcCCCCcChhhHHHHHHHHHHc
Q 006490          195 VRALKRIFIICDHDMDGALNDAELNEFQVKCFNA----PLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEK  270 (643)
Q Consensus       195 ~~~l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~  270 (643)
                      .+.++++|...+.+ ++.++..|+......+...    .......+.++..+...-.++  +..+.++.|..++.     
T Consensus        19 ~~~~r~~F~~~d~~-dG~Is~~EL~~~L~~~~~~~~~~~~~~~s~e~~~~li~~~D~d~--~G~i~~~EF~~l~~-----   90 (188)
T d1qxpa2          19 DDNFKTLFSKLAGD-DMEISVKELQTILNRIISKHKDLRTNGFSLESCRSMVNLMDRDG--NGKLGLVEFNILWN-----   90 (188)
T ss_dssp             --------CCCCCS-SSSCCCSCTTTTTCC---------CCCCCHHHHHHHHHHHCC----CCCCCSSSHHHHHH-----
T ss_pred             HHHHHHHHHHHcCC-CCEECHHHHHHHHHHhCccccccccccCCHHHHHHHHHHhcCCC--CCcccHHHHHHHHh-----
Confidence            34577788877744 7889988886554333221    111122445555555553332  22378888887744     


Q ss_pred             CCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCChhHHhhhhccCCC-CC
Q 006490          271 GRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPE-SP  349 (643)
Q Consensus       271 ~~~~~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~-~p  349 (643)
                                                                 -.+.++.+|+.||.|++|.|+..|+..++...-. .+
T Consensus        91 -------------------------------------------~~~~~~~~F~~~D~d~sG~i~~~El~~~l~~~g~~~~  127 (188)
T d1qxpa2          91 -------------------------------------------RIRNYLTIFRKFDLDKSGSMSAYEMRMAIEAAGFKLP  127 (188)
T ss_dssp             -------------------------------------------HHHHHHHHHGGGCTTCCSCCBHHHHHHHHHHTTEECC
T ss_pred             -------------------------------------------hhHHHHHHHHHhCCCCCCEECHHHHHHHHHHhhhcCC
Confidence                                                       1345778999999999999999999998875422 11


Q ss_pred             CCCCCCCCCccccCCcccchhhhhhh
Q 006490          350 WDEAPYKDAAETTALGNLTLKGFVSK  375 (643)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (643)
                      -.....-.....+.+|.|+...|++.
T Consensus       128 ~~~~~~l~~~~~~~dg~i~f~eFi~~  153 (188)
T d1qxpa2         128 CQLHQVIVARFADDELIIDFDNFVRC  153 (188)
T ss_dssp             HHHHHHHHHHTSCSSSBCCHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCcCCHHHHHHH
Confidence            00000000112367778888888664

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=91.32  E-value=0.065  Score=46.97  Aligned_cols=25  Identities=24%  Similarity=0.365  Sum_probs=21.6

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcC
Q 006490           11 TGVRVVVVGDRGTGKSSLIAAAATE   35 (643)
Q Consensus        11 ~~~kI~lvG~~~vGKSsL~n~l~~~   35 (643)
                      ..+-|+|.|.+||||||+++.|...
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~~~   26 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLRSW   26 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHC
Confidence            4678999999999999999988654

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=91.30  E-value=0.055  Score=47.47  Aligned_cols=25  Identities=16%  Similarity=0.104  Sum_probs=22.0

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHhcC
Q 006490          422 NVFRCLLFGPQNAGKSALLNSFLER  446 (643)
Q Consensus       422 ~~~ki~ivG~~nvGKSSLln~l~~~  446 (643)
                      +++-|+|.|.+||||||+.+.|...
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~~~   26 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLRSW   26 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHC
Confidence            5788999999999999999988653

>d1s6ia_ a.39.1.5 (A:) Calcium-dependent protein kinase sk5 CLD {Soybean (Glycine max) [TaxId: 3847]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium-dependent protein kinase sk5 CLD
species: Soybean (Glycine max) [TaxId: 3847]

Probab=91.26  E-value=0.14  Score=44.40  Aligned_cols=137  Identities=18%  Similarity=0.198  Sum_probs=90.1

Q ss_pred             HHHHhhhhhcCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhccCCcCCCCcChhhHHHHHHHHHHcCCccc
Q 006490          196 RALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLET  275 (643)
Q Consensus       196 ~~l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~  275 (643)
                      ..|+++|...|.+.+|.++..|+....... +.......++.+...+..   .  .+..++++.|+.+........+.+.
T Consensus        10 ~~l~~~F~~~D~d~dG~Is~~e~~~~l~~l-~~~~~~~~~~~~~~~~d~---~--~~g~i~~~ef~~~~~~~~~~~~~e~   83 (182)
T d1s6ia_          10 GGLKELFKMIDTDNSGTITFDELKDGLKRV-GSELMESEIKDLMDAADI---D--KSGTIDYGEFIAATVHLNKLEREEN   83 (182)
T ss_dssp             CSHHHHHHTTSSSSSSCEEHHHHHHHHTTT-TCCCCHHHHHHHHHHTCT---T--CSSEECHHHHHHHHTTSSSSCCCCS
T ss_pred             HHHHHHHHHHcCCCcCCCCHHHHHHHHHHc-CCccccccchhhhhhhhc---c--ccccchHHHHHHHHHhhcccccHHH
Confidence            347788999999999999999997655443 455566555554443322   2  2334888999988777766666677


Q ss_pred             hhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCChhHHhhhhccCC
Q 006490          276 TWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAP  346 (643)
Q Consensus       276 ~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~~~~~~  346 (643)
                      .+.+.+.+..+....+...=+-..+.-     ..++.   ..+.++|+.+|.|+||.++-.|...+..-.|
T Consensus        84 l~~aF~~~D~d~~G~i~~~el~~~l~~-----~gl~~---~ev~~~f~~~D~d~DG~Is~~EF~~~m~~~~  146 (182)
T d1s6ia_          84 LVSAFSYFDKDGSGYITLDEIQQACKD-----FGLDD---IHIDDMIKEIDQDNDGQIDYGEFAAMMRKRK  146 (182)
T ss_dssp             THHHHHHTTTTCSSEEEHHHHHHTTTT-----TTCCT---THHHHHHHHHCSSSSSEEETTHHHHTTSCCC
T ss_pred             HHHHHHHHhhcCCCccchhhhhhhhhh-----cCccH---HHHHHHHHHhhcCCCCeEeHHHHHHHHHhCc
Confidence            777777776665433332111001100     01222   3467799999999999999999988888664

>d1alva_ a.39.1.8 (A:) Calpain small (regulatory) subunit (domain VI) {Pig (Sus scrofa) [TaxId: 9823]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Calpain small (regulatory) subunit (domain VI)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.12  E-value=0.1  Score=44.92  Aligned_cols=129  Identities=20%  Similarity=0.238  Sum_probs=76.9

Q ss_pred             HHHHhhhhhcCCCCCCCCChHHHHHHhhhhcCC----CCCHHHHHHHHHHHHhhccCCcCCCCcChhhHHHHHHHHHHcC
Q 006490          196 RALKRIFIICDHDMDGALNDAELNEFQVKCFNA----PLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKG  271 (643)
Q Consensus       196 ~~l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~  271 (643)
                      +.++.+|...+.+ ++.++..||..........    .....-.+.++..+...-.++  ...+.++.|+.+...     
T Consensus         4 ~~~r~~F~~~d~~-dg~I~~~EL~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~d~d~--~g~i~~~ef~~~~~~-----   75 (173)
T d1alva_           4 RQFRRLFAQLAGD-DMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDT--TGKLGFEEFKYLWNN-----   75 (173)
T ss_dssp             HHHHHHHHHHHGG-GTSBCHHHHHHHHHHHHHTCSTTCCSCCCHHHHHHHHHHHCTTC--SSSBCHHHHHHHHHH-----
T ss_pred             HHHHHHHHHHcCC-CCcCCHHHHHHHHHHhCCCcchhhhccCCHHHHHHHHHHhccCC--CCcccchhhhhhhhh-----
Confidence            3466677666643 7889999987665442111    111122345555555553332  335888888887541     


Q ss_pred             CccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCChhHHhhhhccCCC-CCC
Q 006490          272 RLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPE-SPW  350 (643)
Q Consensus       272 ~~~~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~-~p~  350 (643)
                                                                 ...++..|+.||.|++|.++..|+..++..... .|.
T Consensus        76 -------------------------------------------~~~~~~~f~~~D~d~~G~I~~~el~~~L~~~g~~~~~  112 (173)
T d1alva_          76 -------------------------------------------IKKWQAIYKQFDVDRSGTIGSSELPGAFEAAGFHLNE  112 (173)
T ss_dssp             -------------------------------------------HHHHHHHHHHHCTTCCSSBCTTTHHHHHHHHTCCCCH
T ss_pred             -------------------------------------------hhHHHHHHHHhccCCCCeecHHHHHHHHHHHHHhhHH
Confidence                                                       234667889999999999999998888766422 221


Q ss_pred             CCCCCCCCccccCCcccchhhhhhh
Q 006490          351 DEAPYKDAAETTALGNLTLKGFVSK  375 (643)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~  375 (643)
                      ...........+..|.|+...|++.
T Consensus       113 ~~~~~~~~~d~d~~G~i~~~EF~~~  137 (173)
T d1alva_         113 HLYSMIIRRYSDEGGNMDFDNFISC  137 (173)
T ss_dssp             HHHHHHHHHHTCSSSCBCHHHHHHH
T ss_pred             HHHHHhhccccCCCCeEeHHHHHHH
Confidence            1000001233467788888887664

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=91.05  E-value=0.049  Score=49.75  Aligned_cols=22  Identities=32%  Similarity=0.516  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 006490          425 RCLLFGPQNAGKSALLNSFLER  446 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~  446 (643)
                      .+++.|+||+||||+++.+...
T Consensus        37 ~~L~~GPpGtGKT~lA~~la~~   58 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLAHIIASE   58 (238)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHhc
Confidence            4899999999999999999864

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=91.05  E-value=0.049  Score=48.94  Aligned_cols=22  Identities=32%  Similarity=0.492  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 006490           14 RVVVVGDRGTGKSSLIAAAATE   35 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~~   35 (643)
                      -|+|.|+|||||||+...|...
T Consensus         5 iI~I~GppGSGKgT~ak~La~~   26 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEA   26 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4778899999999999988764

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=91.04  E-value=0.044  Score=52.62  Aligned_cols=22  Identities=23%  Similarity=0.493  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 006490          425 RCLLFGPQNAGKSALLNSFLER  446 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~  446 (643)
                      .|+|.|.+|+|||||+|+|++.
T Consensus       168 nili~G~tgSGKTT~l~al~~~  189 (323)
T d1g6oa_         168 NVIVCGGTGSGKTTYIKSIMEF  189 (323)
T ss_dssp             CEEEEESTTSSHHHHHHHHGGG
T ss_pred             CEEEEeeccccchHHHHHHhhh
Confidence            5899999999999999999974

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=91.03  E-value=0.26  Score=44.71  Aligned_cols=20  Identities=35%  Similarity=0.546  Sum_probs=17.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 006490           15 VVVVGDRGTGKSSLIAAAAT   34 (643)
Q Consensus        15 I~lvG~~~vGKSsL~n~l~~   34 (643)
                      +.|.|++|+||||++..+..
T Consensus        37 ~Ll~Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          37 YLFSGTRGVGKTSIARLLAK   56 (239)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            78899999999999988754

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=90.90  E-value=0.065  Score=47.20  Aligned_cols=27  Identities=30%  Similarity=0.445  Sum_probs=23.2

Q ss_pred             cCceEEEEEEcCCCCCHHHHHHHHhcC
Q 006490          420 ERNVFRCLLFGPQNAGKSALLNSFLER  446 (643)
Q Consensus       420 ~~~~~ki~ivG~~nvGKSSLln~l~~~  446 (643)
                      ...++-|+|-|..||||||+++.|...
T Consensus         6 ~~kp~~I~ieG~~GsGKTTl~~~L~~~   32 (197)
T d2vp4a1           6 GTQPFTVLIEGNIGSGKTTYLNHFEKY   32 (197)
T ss_dssp             TCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHH
Confidence            345678999999999999999998754

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=90.86  E-value=0.052  Score=49.27  Aligned_cols=22  Identities=32%  Similarity=0.495  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 006490           14 RVVVVGDRGTGKSSLIAAAATE   35 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~~   35 (643)
                      .++|.|+||+||||++..+...
T Consensus        47 ~lll~Gp~G~GKTtla~~iak~   68 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALARE   68 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            4899999999999999988764

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=90.84  E-value=0.1  Score=50.04  Aligned_cols=23  Identities=30%  Similarity=0.510  Sum_probs=20.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcC
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATE   35 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~   35 (643)
                      .+|+|.|.+|+|||||+|.|+..
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~  189 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEF  189 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGG
T ss_pred             CCEEEEeeccccchHHHHHHhhh
Confidence            35999999999999999999864

>d1c07a_ a.39.1.6 (A:) Eps15 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Eps15 homology domain (EH domain)
domain: Eps15
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.83  E-value=0.015  Score=45.00  Aligned_cols=65  Identities=25%  Similarity=0.240  Sum_probs=46.0

Q ss_pred             cchhHHHHHHHhhhhhcCCCCCCCChhHHhhhhccCCCCCC-CCCCCCCCccccCCcccchhhhhhh
Q 006490          310 LASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPW-DEAPYKDAAETTALGNLTLKGFVSK  375 (643)
Q Consensus       310 ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~  375 (643)
                      +|++-.+.++++|+.+|.|++|.++-+|+..+|.... .|- .-...-.....+.+|.++...|...
T Consensus         4 lt~~e~~~~~~~F~~~D~d~~G~is~~e~~~~l~~~~-l~~~~l~~i~~~~D~d~dG~l~~~EF~~a   69 (95)
T d1c07a_           4 VSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTG-LPSTLLAHIWSLCDTKDCGKLSKDQFALA   69 (95)
T ss_dssp             SCSHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHTTT-CCHHHHHHHHHHHCTTCSSSEETTTHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHhcC-CCHHHHHHHHHHhCCCCCCeEcHHHHHHH
Confidence            5677788899999999999999999999999998652 330 0001111244577888888877543

>d1ggwa_ a.39.1.5 (A:) Cdc4p {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Cdc4p
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=90.75  E-value=0.28  Score=40.21  Aligned_cols=99  Identities=17%  Similarity=0.245  Sum_probs=68.1

Q ss_pred             HHhhhhhcCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhccCCcCCCCcChhhHHHHHHHHHHcCCccchh
Q 006490          198 LKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTW  277 (643)
Q Consensus       198 l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~w  277 (643)
                      .+.+|...|.+.+|.++..|+..... .++...+..++..+.   .    .  .+..++++.|+.+...           
T Consensus         7 fke~F~~~D~d~dG~I~~~el~~~l~-~lg~~~t~~ei~~~~---~----~--~~~~i~~~eF~~~~~~-----------   65 (140)
T d1ggwa_           7 YKQAFSLFDRHGTGRIPKTSIGDLLR-ACGQNPTLAEITEIE---S----T--LPAEVDMEQFLQVLNR-----------   65 (140)
T ss_dssp             THHHHHHTCSSSSSEECHHHHHHHHH-HTSCCCCHHHHHHHH---T----T--SCSSEEHHHHHHHHCT-----------
T ss_pred             HHHHHHHHCCCCCCeECHHHHHHHHH-HHHhhhHHHhhhhhh---c----c--ccccccchhhhhhhhh-----------
Confidence            45678889999999999999976544 456777777765542   1    1  1345888888876420           


Q ss_pred             HHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCChhHHhhhhccC
Q 006490          278 AVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTA  345 (643)
Q Consensus       278 ~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~~~~~  345 (643)
                          .....                        .....+-++++|+.||.|++|.++.+|+..++...
T Consensus        66 ----~~~~~------------------------~~~~~~~l~~aF~~~D~d~~G~I~~~el~~~l~~~  105 (140)
T d1ggwa_          66 ----PNGFD------------------------MPGDPEEFVKGFQVFDKDATGMIGVGELRYVLTSL  105 (140)
T ss_dssp             ----TSSSS------------------------SSCCHHHHHHHHHTTCSSCSSCCCHHHHHHHHHHH
T ss_pred             ----hhhcc------------------------hhhHHHHHHHHHHHHhccCCCcchHHHHHHHHHHc
Confidence                00000                        00113447889999999999999999999888754

>d1f54a_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.75  E-value=0.016  Score=42.75  Aligned_cols=67  Identities=19%  Similarity=0.376  Sum_probs=47.4

Q ss_pred             ecchhHHHHHHHhhhhhcCCCCCCCChhHHhhhhccCCCCC--CCCCCCCCCccccCCcccchhhhhhh
Q 006490          309 ELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESP--WDEAPYKDAAETTALGNLTLKGFVSK  375 (643)
Q Consensus       309 ~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~p--~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (643)
                      .||.+=..-++.+|+.||.|++|.++..|+..++...-..|  ............+..|.|+...|+..
T Consensus         3 ~lt~eqi~el~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~t~~e~~~~~~~~D~~~~g~I~~~eF~~~   71 (77)
T d1f54a_           3 NLTEEQIAEFKEAFALFDKDNNGSISSSELATVMRSLGLSPSEAEVNDLMNEIDVDGNHQIEFSEFLAL   71 (77)
T ss_dssp             CCCHHHHHHHHHHHHHTCTTCSSEEEHHHHHHHHHHHTCCCCHHHHHHHHHTTCCSSCCEEEHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCCeEChHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHH
Confidence            46677778899999999999999999999999887653222  11111222344567788888877654

>d1iq3a_ a.39.1.6 (A:) Pob1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Eps15 homology domain (EH domain)
domain: Pob1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.73  E-value=0.031  Score=44.38  Aligned_cols=70  Identities=16%  Similarity=0.206  Sum_probs=50.1

Q ss_pred             CCceecchhHHHHHHHhhhhhcCCCCCCCChhHHhhhhccCCCCC-CCCCCCCCCccccCCcccchhhhhhh
Q 006490          305 DQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESP-WDEAPYKDAAETTALGNLTLKGFVSK  375 (643)
Q Consensus       305 ~~~~~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (643)
                      +....+|++-.+.++++|+.+|.|++|.++-+++.++|.... .| ..-..+-..+..+.+|.++...|...
T Consensus        11 ~~~~~lt~ee~~~y~~lF~~~D~d~~G~Is~~e~~~~l~~s~-L~~~~L~~Iw~l~D~d~dG~l~~~EF~~a   81 (110)
T d1iq3a_          11 DEPWRITEEQREYYVNQFRSLQPDPSSFISGSVAKNFFTKSK-LSIPELSYIWELSDADCDGALTLPEFCAA   81 (110)
T ss_dssp             CSSCCCSSSSHHHHHHHHHHHCCSSSSEEEHHHHHHHCCSSS-CSSCCHHHHHHHHCSSSCSEEEHHHHHHH
T ss_pred             CCCCccCHHHHHHHHHHHHHhCCCcccchhHHHHHHHHHhhc-cchHHHHHHHHHhccCCCCeECHHHHHHH
Confidence            344567777899999999999999999999999999997652 33 11111112245677888888877643

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=90.71  E-value=0.058  Score=49.99  Aligned_cols=23  Identities=26%  Similarity=0.352  Sum_probs=20.2

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcC
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATE   35 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~   35 (643)
                      -.++|.|+||+|||++++.+...
T Consensus        44 ~~lll~GppGtGKT~l~~~l~~~   66 (276)
T d1fnna2          44 PRATLLGRPGTGKTVTLRKLWEL   66 (276)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHH
Confidence            36999999999999999988764

>d1fw4a_ a.39.1.5 (A:) Calmodulin {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.46  E-value=0.019  Score=40.79  Aligned_cols=58  Identities=24%  Similarity=0.357  Sum_probs=40.1

Q ss_pred             HHHHhhhhhcCCCCCCCChhHHhhhhccCCCCCCC--CCCCCCCccccCCcccchhhhhh
Q 006490          317 FLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWD--EAPYKDAAETTALGNLTLKGFVS  374 (643)
Q Consensus       317 f~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~p~~--~~~~~~~~~~~~~~~~~~~~~~~  374 (643)
                      -|+++|+.||.|++|.++..|+..++......+..  ...+-.....+.+|.|+...|.+
T Consensus         4 el~~aF~~fD~d~~G~I~~~el~~~l~~lg~~~~~~e~~~l~~~~D~d~~g~I~~~eF~~   63 (65)
T d1fw4a_           4 EIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQ   63 (65)
T ss_dssp             HHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHTTCTTCSSSEEHHHHHH
T ss_pred             HHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCCCCcEeHHHHHH
Confidence            37899999999999999999999998876332211  11122234456777777776654

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=90.40  E-value=0.074  Score=47.48  Aligned_cols=26  Identities=23%  Similarity=0.252  Sum_probs=22.4

Q ss_pred             cCceEEEEEEcCCCCCHHHHHHHHhc
Q 006490          420 ERNVFRCLLFGPQNAGKSALLNSFLE  445 (643)
Q Consensus       420 ~~~~~ki~ivG~~nvGKSSLln~l~~  445 (643)
                      ...++-|.+.|.||||||||.+.|..
T Consensus        21 ~~kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          21 NQRGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             TSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34567799999999999999999874

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=90.24  E-value=0.063  Score=49.86  Aligned_cols=22  Identities=45%  Similarity=0.561  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 006490           14 RVVVVGDRGTGKSSLIAAAATE   35 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~~   35 (643)
                      .|+|.|++|+|||||+++++..
T Consensus        31 ~i~i~G~~G~GKTsLl~~~~~~   52 (283)
T d2fnaa2          31 ITLVLGLRRTGKSSIIKIGINE   52 (283)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Confidence            4789999999999999998753

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=90.23  E-value=0.065  Score=49.32  Aligned_cols=22  Identities=45%  Similarity=0.638  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 006490           14 RVVVVGDRGTGKSSLIAAAATE   35 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~~   35 (643)
                      .|++.|+||+|||+|++.+.+.
T Consensus        44 giLl~GppGtGKT~la~aia~~   65 (247)
T d1ixza_          44 GVLLVGPPGVGKTHLARAVAGE   65 (247)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEecCCCCChhHHHHHHHHH
Confidence            5999999999999999999863

>d1juoa_ a.39.1.8 (A:) Sorcin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Sorcin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.07  E-value=0.14  Score=43.88  Aligned_cols=127  Identities=20%  Similarity=0.257  Sum_probs=74.2

Q ss_pred             HHhhhhhcCCCCCCCCChHHHHHHhhhh-cCCCCCHHHHHHHHHHHHhhccCCcCCCCcChhhHHHHHHHHHHcCCccch
Q 006490          198 LKRIFIICDHDMDGALNDAELNEFQVKC-FNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETT  276 (643)
Q Consensus       198 l~~~~~~~~~~~~~~l~~~el~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~  276 (643)
                      ++..|...+ +.++.++..|+....... ..........+.++..+...-.++  +..|+++.|+.+...          
T Consensus         9 ~~~~F~~~~-~~dG~Is~~EL~~~L~~~g~~~~~~~~~~~~v~~l~~~~D~d~--~G~I~f~EF~~~~~~----------   75 (172)
T d1juoa_           9 LYGYFAAVA-GQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDM--SGTMGFNEFKELWAV----------   75 (172)
T ss_dssp             THHHHHHHH-TTTTEECHHHHHHHHHHHTTTCSSCCCCHHHHHHHHHHHCTTC--SSCEEHHHHHHHHHH----------
T ss_pred             HHHHHHHhC-CCCCCCCHHHHHHHHHHcCCCCCcccCCHHHHHHHHHHHCCCC--CCceehHHHHHHHHh----------
Confidence            344455443 568899999997654332 222211112344444455443333  445899999887552          


Q ss_pred             hHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCChhHHhhhhccCCCCCCCCCCCC
Q 006490          277 WAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYK  356 (643)
Q Consensus       277 w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~~~  356 (643)
                                                            ..-....|+.||.|++|.++.+|+..++......... ....
T Consensus        76 --------------------------------------~~~~~~~f~~~D~d~sG~i~~~El~~~l~~~g~~ls~-~~~~  116 (172)
T d1juoa_          76 --------------------------------------LNGWRQHFISFDTDRSGTVDPQELQKALTTMGFRLSP-QAVN  116 (172)
T ss_dssp             --------------------------------------HHHHHHHHHTTCTTCCSEECHHHHHHHHHHTTCCCCH-HHHH
T ss_pred             --------------------------------------hhhhhHHHHHhCcCCCCcCCHHHHHHHHHHHHHhhhH-HHHH
Confidence                                                  1234567999999999999999999988765332211 1000


Q ss_pred             C-CccccCCcccchhhhhhhh
Q 006490          357 D-AAETTALGNLTLKGFVSKW  376 (643)
Q Consensus       357 ~-~~~~~~~~~~~~~~~~~~w  376 (643)
                      . -.+.+.+|.++...|++..
T Consensus       117 ~l~~~~d~~g~i~~~eF~~~~  137 (172)
T d1juoa_         117 SIAKRYSTNGKITFDDYIACC  137 (172)
T ss_dssp             HHHHHTCSSSSEEHHHHHHHH
T ss_pred             HHHHHHHhcCCcCHHHHHHHH
Confidence            0 0122566778888776643

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=90.05  E-value=0.088  Score=48.36  Aligned_cols=24  Identities=38%  Similarity=0.587  Sum_probs=21.0

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcC
Q 006490          423 VFRCLLFGPQNAGKSALLNSFLER  446 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~~~  446 (643)
                      ...|++.|+||+|||++++++.+.
T Consensus        40 ~~~vLL~GppGtGKT~la~alA~~   63 (246)
T d1d2na_          40 LVSVLLEGPPHSGKTALAAKIAEE   63 (246)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECcCCCCHHHHHHHHhhc
Confidence            345999999999999999999763

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=90.05  E-value=0.53  Score=39.38  Aligned_cols=38  Identities=24%  Similarity=0.242  Sum_probs=27.1

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHhcCC--CCCCCCCCccc
Q 006490          421 RNVFRCLLFGPQNAGKSALLNSFLERP--FSENYAPTTGE  458 (643)
Q Consensus       421 ~~~~ki~ivG~~nvGKSSLln~l~~~~--~~~~~~~t~~~  458 (643)
                      +.+.-|++-|+-|||||||++.++..-  ...+..||-..
T Consensus        31 ~~g~ii~L~G~LGaGKTtfvr~~~~~lg~~~~V~SPTF~l   70 (158)
T d1htwa_          31 EKAIMVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYTL   70 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHTTCCSCCCCCTTTC
T ss_pred             CCCeEEEEecCCCccHHHHHHHHHhhcccccccCCCceEE
Confidence            345679999999999999999998532  12344466544

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=89.83  E-value=0.069  Score=52.50  Aligned_cols=21  Identities=24%  Similarity=0.517  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 006490          425 RCLLFGPQNAGKSALLNSFLE  445 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~  445 (643)
                      ++++||+||||||+++..|..
T Consensus        45 n~llvG~~GvGKtaiv~~la~   65 (387)
T d1qvra2          45 NPVLIGEPGVGKTAIVEGLAQ   65 (387)
T ss_dssp             CCEEEECTTSCHHHHHHHHHH
T ss_pred             CCeEECCCCCCHHHHHHHHHH
Confidence            468999999999999976664

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=89.76  E-value=0.1  Score=49.34  Aligned_cols=27  Identities=19%  Similarity=0.256  Sum_probs=22.5

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHhc
Q 006490            8 SSRTGVRVVVVGDRGTGKSSLIAAAAT   34 (643)
Q Consensus         8 ~~~~~~kI~lvG~~~vGKSsL~n~l~~   34 (643)
                      ..+..+-|+|.|.+|||||||.+.|..
T Consensus        76 ~~k~P~iIGIaG~sgSGKSTla~~L~~  102 (308)
T d1sq5a_          76 GQRIPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             -CCCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCCCEEEEEeCCCCCCCcHHHHHHHH
Confidence            356678999999999999999988753

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=89.69  E-value=0.077  Score=49.05  Aligned_cols=23  Identities=48%  Similarity=0.582  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcC
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATE   35 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~   35 (643)
                      -.|.+.|+||+|||++++.+...
T Consensus        46 ~~iLL~GppGtGKT~la~~iA~~   68 (256)
T d1lv7a_          46 KGVLMVGPPGTGKTLLAKAIAGE   68 (256)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEeeCCCCCCccHHHHHHHHH
Confidence            35999999999999999999863

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=89.69  E-value=0.1  Score=46.51  Aligned_cols=25  Identities=24%  Similarity=0.421  Sum_probs=21.6

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhc
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAAT   34 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~   34 (643)
                      .+.+-|-|.|.||+|||||.+.|..
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4556799999999999999999864

>d1pvaa_ a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [TaxId: 8010]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Parvalbumin
species: Pike (Esox lucius) [TaxId: 8010]

Probab=89.62  E-value=0.086  Score=41.58  Aligned_cols=59  Identities=17%  Similarity=0.309  Sum_probs=38.8

Q ss_pred             HHHHHhhhhhcCCCCCCCChhHHhhhhccCC--CCCCCC---CCCCCCccccCCcccchhhhhh
Q 006490          316 EFLRGIFGLYDIDNDGAVRPAELEDLFLTAP--ESPWDE---APYKDAAETTALGNLTLKGFVS  374 (643)
Q Consensus       316 ~f~~~~f~~~~~~~~~~l~~~~~~~~~~~~~--~~p~~~---~~~~~~~~~~~~~~~~~~~~~~  374 (643)
                      .-++.+|+.||.|++|.++.+|+..++....  +.+...   .........+.+|.|+...|.+
T Consensus        41 ~~~~~~F~~~D~d~~G~I~~~El~~~l~~l~~~g~~ls~~ev~~~~~~~D~d~dG~I~~~EF~~  104 (109)
T d1pvaa_          41 NDVKKVFKAIDADASGFIEEEELKFVLKSFAADGRDLTDAETKAFLKAADKDGDGKIGIDEFET  104 (109)
T ss_dssp             HHHHHHHHHHCTTCSSSBCHHHHHTGGGGTCTTCCCCCHHHHHHHHHHHCTTCSSSBCHHHHHH
T ss_pred             HHHHHHhhCccCCCcCeEcHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHCCCCcCcEeHHHHHH
Confidence            4577899999999999999999988876432  112111   1111223456777777776654

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=89.52  E-value=0.051  Score=50.74  Aligned_cols=21  Identities=24%  Similarity=0.358  Sum_probs=17.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 006490           15 VVVVGDRGTGKSSLIAAAATE   35 (643)
Q Consensus        15 I~lvG~~~vGKSsL~n~l~~~   35 (643)
                      +.|.|+||+|||++++.+...
T Consensus        49 l~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHHH
Confidence            345699999999999998764

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=89.40  E-value=0.078  Score=50.59  Aligned_cols=22  Identities=23%  Similarity=0.523  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 006490          425 RCLLFGPQNAGKSALLNSFLER  446 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~  446 (643)
                      -|+++|+||||||.|.+++.+.
T Consensus        51 ~iLl~GPpG~GKT~lAkalA~~   72 (309)
T d1ofha_          51 NILMIGPTGVGKTEIARRLAKL   72 (309)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHhhc
Confidence            4789999999999999999864

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.28  E-value=0.098  Score=46.35  Aligned_cols=22  Identities=23%  Similarity=0.471  Sum_probs=19.2

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhc
Q 006490           13 VRVVVVGDRGTGKSSLIAAAAT   34 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~   34 (643)
                      +-|+|-|..||||||+++.|..
T Consensus         1 mlI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           1 MLIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999988764

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=89.26  E-value=0.087  Score=48.70  Aligned_cols=23  Identities=30%  Similarity=0.433  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 006490          424 FRCLLFGPQNAGKSALLNSFLER  446 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~  446 (643)
                      -.++|.|+||+|||++++.+...
T Consensus        44 ~~lll~GppGtGKT~l~~~l~~~   66 (276)
T d1fnna2          44 PRATLLGRPGTGKTVTLRKLWEL   66 (276)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999998864

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=89.26  E-value=0.1  Score=48.46  Aligned_cols=25  Identities=24%  Similarity=0.226  Sum_probs=19.5

Q ss_pred             ceEE-EEEEcCCCCCHHHHHHHHhcC
Q 006490          422 NVFR-CLLFGPQNAGKSALLNSFLER  446 (643)
Q Consensus       422 ~~~k-i~ivG~~nvGKSSLln~l~~~  446 (643)
                      +... +.+.|+||+|||++++++...
T Consensus        44 ~~~~~l~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          44 DVNMIYGSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             CEEEEEECTTCCSSSHHHHHHHHHHH
T ss_pred             CcceEEEeECCCCCCHHHHHHHHHHH
Confidence            3444 345699999999999999864

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.22  E-value=0.084  Score=48.47  Aligned_cols=23  Identities=22%  Similarity=0.475  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 006490          425 RCLLFGPQNAGKSALLNSFLERP  447 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~~  447 (643)
                      .+++.|+||+||||++.++.+.-
T Consensus        54 ~lll~GPpG~GKTt~a~~la~~~   76 (253)
T d1sxja2          54 AAMLYGPPGIGKTTAAHLVAQEL   76 (253)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            58999999999999999998753

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=89.19  E-value=0.083  Score=48.97  Aligned_cols=21  Identities=24%  Similarity=0.442  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 006490          425 RCLLFGPQNAGKSALLNSFLE  445 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~  445 (643)
                      -|+|.|++|+|||||+++++.
T Consensus        31 ~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          31 ITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            478999999999999999875

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=89.09  E-value=0.088  Score=47.16  Aligned_cols=22  Identities=32%  Similarity=0.451  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 006490          425 RCLLFGPQNAGKSALLNSFLER  446 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~  446 (643)
                      -|+|.|+|||||||+...|...
T Consensus         5 iI~I~GppGSGKgT~ak~La~~   26 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEA   26 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4788899999999999998864

>d1wrka1 a.39.1.5 (A:4-85) Troponin C {Human (Homo sapiens), cardiac isoform [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Human (Homo sapiens), cardiac isoform [TaxId: 9606]

Probab=89.09  E-value=0.47  Score=34.86  Aligned_cols=44  Identities=20%  Similarity=0.285  Sum_probs=29.3

Q ss_pred             cchHHHHHHHHhhhhhcCCCC-CCCCChHHHHHHhhhhcCCCCCHH
Q 006490          189 TLKPRCVRALKRIFIICDHDM-DGALNDAELNEFQVKCFNAPLQPA  233 (643)
Q Consensus       189 ~~~~~~~~~l~~~~~~~~~~~-~~~l~~~el~~~~~~~~~~~~~~~  233 (643)
                      .+.++-...++..|...|.++ +|.++..|+.... ++.+...+..
T Consensus         8 ~ls~eq~~~~~~~F~~fD~d~~~G~I~~~el~~~l-~~lg~~~t~~   52 (82)
T d1wrka1           8 QLTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVM-RMLGQNPTPE   52 (82)
T ss_dssp             HCCHHHHHHHHHHHHHHTTTCTTSSBCHHHHHHHH-HHTTCCCCHH
T ss_pred             hCCHHHHHHHHHHHHHHcCcCCCCeEeHHHHHHHH-HHcCCCCCHH
Confidence            345666677888899999884 7899999886543 2344444433

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.08  E-value=0.088  Score=47.45  Aligned_cols=21  Identities=24%  Similarity=0.485  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 006490           14 RVVVVGDRGTGKSSLIAAAAT   34 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~   34 (643)
                      .+.|.|+||+||||+++.+..
T Consensus        38 ~~ll~Gp~G~GKTt~a~~la~   58 (224)
T d1sxjb2          38 HMIISGMPGIGKTTSVHCLAH   58 (224)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCchhhHHHHHH
Confidence            489999999999999988764

>d1df0a1 a.39.1.8 (A:515-700) Calpain large subunit, C-terminal domain (domain IV) {Rat (Rattus norvegicus), M-type [TaxId: 10116]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Calpain large subunit, C-terminal domain (domain IV)
species: Rat (Rattus norvegicus), M-type [TaxId: 10116]

Probab=88.91  E-value=0.23  Score=43.06  Aligned_cols=128  Identities=19%  Similarity=0.196  Sum_probs=77.4

Q ss_pred             HHHHhhhhhcCCCCCCCCChHHHHHHhhhhcCC----CCCHHHHHHHHHHHHhhccCCcCCCCcChhhHHHHHHHHHHcC
Q 006490          196 RALKRIFIICDHDMDGALNDAELNEFQVKCFNA----PLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKG  271 (643)
Q Consensus       196 ~~l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~  271 (643)
                      +.++++|...+ +.++.++..|+..........    .......+.+...+...-.++  +..|+++.|..+...     
T Consensus        18 ~~~r~~F~~~d-~~dG~Is~~EL~~~L~~~~~~~~~~~~~~~s~~~~~~l~~~~D~d~--~G~I~~~EF~~~~~~-----   89 (186)
T d1df0a1          18 DGFRRLFAQLA-GEDAEISAFELQTILRRVLAKREDIKSDGFSIETCKIMVDMLDEDG--SGKLGLKEFYILWTK-----   89 (186)
T ss_dssp             HHHHHHHHHHH-GGGTCEEHHHHHHHHHHHHHC----CCCCCCHHHHHHHHHHHCCSS--SSEECHHHHHHHHHH-----
T ss_pred             HHHHHHHHHHc-CCCCeEcHHHHHHHHHHhcccccccccccCCHHHHHHHHHHHcCCC--CCcccHHHHHHHHHh-----
Confidence            34566666555 678889999987655442211    111222344444555443322  233888888877441     


Q ss_pred             CccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCChhHHhhhhccCCC-CC-
Q 006490          272 RLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPE-SP-  349 (643)
Q Consensus       272 ~~~~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~-~p-  349 (643)
                                                                 .+.++.+|+.||.|++|.|+..|+.+++..... .| 
T Consensus        90 -------------------------------------------~~~~~~~F~~~D~d~sG~I~~~El~~~l~~~g~~~~~  126 (186)
T d1df0a1          90 -------------------------------------------IQKYQKIYREIDVDRSGTMNSYEMRKALEEAGFKLPC  126 (186)
T ss_dssp             -------------------------------------------HHHHHHHHHHHCTTCCSCEEGGGHHHHHHHTTEECCH
T ss_pred             -------------------------------------------HHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhcccH
Confidence                                                       245678999999999999999999999876521 12 


Q ss_pred             CCCCCCCCCccccCCcccchhhhhhh
Q 006490          350 WDEAPYKDAAETTALGNLTLKGFVSK  375 (643)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (643)
                      .....+ .....+..|.|+...|++.
T Consensus       127 ~~~~~~-~~~d~d~dg~I~f~eFi~~  151 (186)
T d1df0a1         127 QLHQVI-VARFADDELIIDFDNFVRC  151 (186)
T ss_dssp             HHHHHH-HHHHCCSTTEECHHHHHHH
T ss_pred             HHHHHH-HHHHcCCCCeEeHHHHHHH
Confidence            101111 1133567788888887664

>d1qxpa2 a.39.1.8 (A:515-702) Calpain large subunit, C-terminal domain (domain IV) {Rat (Rattus norvegicus), mu-type [TaxId: 10116]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Calpain large subunit, C-terminal domain (domain IV)
species: Rat (Rattus norvegicus), mu-type [TaxId: 10116]

Probab=88.85  E-value=1.2  Score=38.39  Aligned_cols=92  Identities=13%  Similarity=0.012  Sum_probs=53.7

Q ss_pred             HHHHHHHHHhCCCCCCCccccccchHHHHHHHHhhhhhcCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhc
Q 006490          167 VFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQ  246 (643)
Q Consensus       167 l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (643)
                      ..+.++..+........+-.+-...-...+.++.+|...|.+..|.++..|+..... ..+..++...++.+..   +. 
T Consensus        64 ~~~~li~~~D~d~~G~i~~~EF~~l~~~~~~~~~~F~~~D~d~sG~i~~~El~~~l~-~~g~~~~~~~~~~l~~---~~-  138 (188)
T d1qxpa2          64 SCRSMVNLMDRDGNGKLGLVEFNILWNRIRNYLTIFRKFDLDKSGSMSAYEMRMAIE-AAGFKLPCQLHQVIVA---RF-  138 (188)
T ss_dssp             HHHHHHHHHCC--CCCCCSSSHHHHHHHHHHHHHHHGGGCTTCCSCCBHHHHHHHHH-HTTEECCHHHHHHHHH---HT-
T ss_pred             HHHHHHHHhcCCCCCcccHHHHHHHHhhhHHHHHHHHHhCCCCCCEECHHHHHHHHH-HhhhcCCHHHHHHHHH---Hh-
Confidence            344455555444333333222222334456778899999999999999999976543 3455555544433332   22 


Q ss_pred             cCCcCCCCcChhhHHHHHH
Q 006490          247 HDGVNDLGLTLSGFLFLHA  265 (643)
Q Consensus       247 ~~~~~~~~~~~~~f~~~~~  265 (643)
                      .+  .+..++++.|+.+..
T Consensus       139 ~~--~dg~i~f~eFi~~~~  155 (188)
T d1qxpa2         139 AD--DELIIDFDNFVRCLV  155 (188)
T ss_dssp             SC--SSSBCCHHHHHHHHH
T ss_pred             cC--CCCcCCHHHHHHHHH
Confidence            22  234599999998854

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=88.76  E-value=0.095  Score=47.42  Aligned_cols=22  Identities=23%  Similarity=0.403  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 006490          425 RCLLFGPQNAGKSALLNSFLER  446 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~  446 (643)
                      .+++.|+||+||||+++.+...
T Consensus        47 ~lll~Gp~G~GKTtla~~iak~   68 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALARE   68 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            4899999999999999998864

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.68  E-value=0.13  Score=47.49  Aligned_cols=23  Identities=35%  Similarity=0.527  Sum_probs=20.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcC
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATE   35 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~   35 (643)
                      -.|.+.|+||+|||+|++++...
T Consensus        39 ~giLL~GppGtGKT~l~~ala~~   61 (258)
T d1e32a2          39 RGILLYGPPGTGKTLIARAVANE   61 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceeEEecCCCCCchHHHHHHHHH
Confidence            35999999999999999999874

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.67  E-value=0.097  Score=47.44  Aligned_cols=22  Identities=41%  Similarity=0.570  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 006490           14 RVVVVGDRGTGKSSLIAAAATE   35 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~~   35 (643)
                      .+.|.|+||+||||++..++..
T Consensus        35 ~lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          35 HMLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChHHHHHHHHHH
Confidence            3899999999999999988764

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=88.65  E-value=0.13  Score=48.72  Aligned_cols=26  Identities=19%  Similarity=0.219  Sum_probs=22.8

Q ss_pred             cCceEEEEEEcCCCCCHHHHHHHHhc
Q 006490          420 ERNVFRCLLFGPQNAGKSALLNSFLE  445 (643)
Q Consensus       420 ~~~~~ki~ivG~~nvGKSSLln~l~~  445 (643)
                      .+.++-|+|.|.+||||||+.+.|..
T Consensus        77 ~k~P~iIGIaG~sgSGKSTla~~L~~  102 (308)
T d1sq5a_          77 QRIPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCCCcHHHHHHHH
Confidence            45679999999999999999888864

>d1c7va_ a.39.1.5 (A:) Calcium vector protein {Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium vector protein
species: Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]

Probab=88.59  E-value=0.03  Score=40.05  Aligned_cols=58  Identities=19%  Similarity=0.348  Sum_probs=42.6

Q ss_pred             HHHHhhhhhcCCCCCCCChhHHhhhhccCCCCCCCCC---CCCCCccccCCcccchhhhhh
Q 006490          317 FLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEA---PYKDAAETTALGNLTLKGFVS  374 (643)
Q Consensus       317 f~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~---~~~~~~~~~~~~~~~~~~~~~  374 (643)
                      -++++|+.||.|++|.++..|+..++...-..|....   ........+.+|.|+...|+.
T Consensus         3 el~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~s~~e~~~~~~~~D~d~dG~i~~~EF~~   63 (68)
T d1c7va_           3 EILRAFKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKEADEDGNGVIDIPEFMD   63 (68)
T ss_dssp             HHHHHHHHHSCSGGGEECHHHHHHHSSTTTTCCCCHHHHHHHHHHHCSSGGGSEEHHHHHH
T ss_pred             HHHHHHHHHcCCCcCeEcHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHH
Confidence            3788999999999999999999999988755454321   122234567777787777664

>d1tiza_ a.39.1.5 (A:) Calmodulin-related protein T21P5.17 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin-related protein T21P5.17
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.54  E-value=0.3  Score=34.26  Aligned_cols=24  Identities=38%  Similarity=0.534  Sum_probs=19.4

Q ss_pred             HHhhhhhcCCCCCCCCChHHHHHH
Q 006490          198 LKRIFIICDHDMDGALNDAELNEF  221 (643)
Q Consensus       198 l~~~~~~~~~~~~~~l~~~el~~~  221 (643)
                      ++++|...|.+.+|.++..|+...
T Consensus         3 ~r~~F~~~D~d~~G~I~~~El~~~   26 (67)
T d1tiza_           3 AKRVFEKFDKNKDGKLSLDEFREV   26 (67)
T ss_dssp             HHHHHHHHCTTSSSCEEHHHHHHH
T ss_pred             HHHHHHHHCCCCcCcCcHHHHHHH
Confidence            567788889999999999887553

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=88.35  E-value=0.11  Score=47.80  Aligned_cols=22  Identities=32%  Similarity=0.528  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 006490          425 RCLLFGPQNAGKSALLNSFLER  446 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~  446 (643)
                      -|++.|+||+|||+|++++.+.
T Consensus        44 giLl~GppGtGKT~la~aia~~   65 (247)
T d1ixza_          44 GVLLVGPPGVGKTHLARAVAGE   65 (247)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEecCCCCChhHHHHHHHHH
Confidence            4899999999999999999964

>d1f54a_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.33  E-value=0.41  Score=34.57  Aligned_cols=44  Identities=20%  Similarity=0.369  Sum_probs=30.5

Q ss_pred             hHHHHHHHHhhhhhcCCCCCCCCChHHHHHHhhhhcCCCCCHHHH
Q 006490          191 KPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEI  235 (643)
Q Consensus       191 ~~~~~~~l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~~~  235 (643)
                      +++-...++.+|...|.+.+|.++..|+..... ..+..++..++
T Consensus         5 t~eqi~el~~~F~~~D~d~~G~I~~~el~~~l~-~~g~~~t~~e~   48 (77)
T d1f54a_           5 TEEQIAEFKEAFALFDKDNNGSISSSELATVMR-SLGLSPSEAEV   48 (77)
T ss_dssp             CHHHHHHHHHHHHHTCTTCSSEEEHHHHHHHHH-HHTCCCCHHHH
T ss_pred             CHHHHHHHHHHHHHHcCCCCCeEChHHHHHHHH-HhCCCCCHHHH
Confidence            445556788889999999999999999876532 23444444433

>d2fcea1 a.39.1.5 (A:84-144) Calmodulin {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=88.24  E-value=0.041  Score=38.29  Aligned_cols=56  Identities=18%  Similarity=0.300  Sum_probs=37.1

Q ss_pred             HHHhhhhhcCCCCCCCChhHHhhhhccCCCCC--CCCCCCCCCccccCCcccchhhhh
Q 006490          318 LRGIFGLYDIDNDGAVRPAELEDLFLTAPESP--WDEAPYKDAAETTALGNLTLKGFV  373 (643)
Q Consensus       318 ~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~p--~~~~~~~~~~~~~~~~~~~~~~~~  373 (643)
                      +++.|+.||+|++|.++..|+..++...-..+  -....+......+..|.|+...|+
T Consensus         3 l~~aF~~fD~~~~G~I~~~el~~~l~~~g~~~~~~ei~~l~~~~D~d~dg~I~~~eFl   60 (61)
T d2fcea1           3 FVKAFQVFDKESTGKVSVGDLRYMLTGLGEKLTDAEVDELLKGVEVDSNGEIDYKKFI   60 (61)
T ss_dssp             HHHHHHHHCTTCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHTTCCCCTTSEECHHHHH
T ss_pred             HHHHHHHHCCCCCCeEeHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCCCCcEeHHHhc
Confidence            67899999999999999999999887652211  111112223445666777666554

>d1k94a_ a.39.1.8 (A:) Grancalcin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Grancalcin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.08  E-value=2.6  Score=35.21  Aligned_cols=85  Identities=16%  Similarity=0.242  Sum_probs=62.6

Q ss_pred             HHHHHHhhhhhcCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhccCCcCCCCcChhhHHHHHHHHHHcCCc
Q 006490          194 CVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRL  273 (643)
Q Consensus       194 ~~~~l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~  273 (643)
                      ..+.++.+|...|.+..|.++.+|++.... ..+..++..+++.+...   ..++    ..++++.|+.+..        
T Consensus        68 ~~~~~~~~F~~fD~d~sG~I~~~El~~~l~-~~G~~l~~~~~~~l~~~---~d~~----g~i~~~eFi~~~~--------  131 (165)
T d1k94a_          68 ALNAWKENFMTVDQDGSGTVEHHELRQAIG-LMGYRLSPQTLTTIVKR---YSKN----GRIFFDDYVACCV--------  131 (165)
T ss_dssp             HHHHHHHHHHHHCTTCCSBCCHHHHHHHHH-HTTCCCCHHHHHHHHHH---HCBT----TBCBHHHHHHHHH--------
T ss_pred             ccchhHHHHHHhCCCCCCeEcHHHHHHHHH-HhhhcCCHHHHHHHHHH---cCCC----CcCcHHHHHHHHH--------
Confidence            345678889999999999999999976553 34667787777666543   3332    3499999988744        


Q ss_pred             cchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCC
Q 006490          274 ETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVR  334 (643)
Q Consensus       274 ~~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~~~~~~~~~~l~  334 (643)
                                                              -.+.+++.|+.+|+|++|.++
T Consensus       132 ----------------------------------------~l~~~~~~F~~~D~d~~G~i~  152 (165)
T d1k94a_         132 ----------------------------------------KLRALTDFFRKRDHLQQGSAN  152 (165)
T ss_dssp             ----------------------------------------HHHHHHHHHHTTCTTCCSEEE
T ss_pred             ----------------------------------------HHHHHHHHHHHhCCCCCCcEE
Confidence                                                    124567899999999999763

>d1wrka1 a.39.1.5 (A:4-85) Troponin C {Human (Homo sapiens), cardiac isoform [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Human (Homo sapiens), cardiac isoform [TaxId: 9606]

Probab=87.99  E-value=0.069  Score=39.69  Aligned_cols=66  Identities=17%  Similarity=0.362  Sum_probs=45.6

Q ss_pred             ecchhHHHHHHHhhhhhcCCC-CCCCChhHHhhhhccCCCCC--CCCCCCCCCccccCCcccchhhhhh
Q 006490          309 ELASEAVEFLRGIFGLYDIDN-DGAVRPAELEDLFLTAPESP--WDEAPYKDAAETTALGNLTLKGFVS  374 (643)
Q Consensus       309 ~ls~~~~~f~~~~f~~~~~~~-~~~l~~~~~~~~~~~~~~~p--~~~~~~~~~~~~~~~~~~~~~~~~~  374 (643)
                      +||.+-.+-++.+|+.||.|+ +|.++..|+..++...-..|  .....+......+.+|.|+...|+.
T Consensus         8 ~ls~eq~~~~~~~F~~fD~d~~~G~I~~~el~~~l~~lg~~~t~~el~~~i~~~D~d~~G~I~f~eFl~   76 (82)
T d1wrka1           8 QLTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLV   76 (82)
T ss_dssp             HCCHHHHHHHHHHHHHHTTTCTTSSBCHHHHHHHHHHTTCCCCHHHHHHHHHTTCTTCCSSBCHHHHHH
T ss_pred             hCCHHHHHHHHHHHHHHcCcCCCCeEeHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHH
Confidence            577888889999999999995 89999999999997653333  1111111223445667777766654

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.94  E-value=0.11  Score=46.70  Aligned_cols=22  Identities=45%  Similarity=0.616  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 006490           14 RVVVVGDRGTGKSSLIAAAATE   35 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~~   35 (643)
                      .+.|.|+||+||||++..++..
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHHH
Confidence            3899999999999999999764

>d1fi6a_ a.39.1.6 (A:) Reps1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Eps15 homology domain (EH domain)
domain: Reps1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.87  E-value=0.022  Score=43.64  Aligned_cols=64  Identities=17%  Similarity=0.260  Sum_probs=46.3

Q ss_pred             cchhHHHHHHHhhhhhcCCCCCCCChhHHhhhhccCCCCCCC-CCCCCCCccccCCcccchhhhhh
Q 006490          310 LASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWD-EAPYKDAAETTALGNLTLKGFVS  374 (643)
Q Consensus       310 ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~  374 (643)
                      +|++-.+.++.+|+.+|.|++|.++-+|+..+|... +.|-. -..+-.....+.+|.++...|..
T Consensus         3 ls~ee~~~y~~~F~~~D~d~~G~i~~~e~~~~l~~~-~l~~~~l~~i~~~~D~d~dG~l~~~EF~~   67 (92)
T d1fi6a_           3 ITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKS-KLPILELSHIWELSDFDKDGALTLDEFCA   67 (92)
T ss_dssp             CCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHH-SSCHHHHHHHHHHHCTTCSSEEEHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCcccchhHHHHHHHHHHc-cCCHHHHHHHHHHhCCCCCCeecHHHHHH
Confidence            677888999999999999999999999999998864 23300 00011124557888888888754

>d1hqva_ a.39.1.8 (A:) Apoptosis-linked protein alg-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Apoptosis-linked protein alg-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.73  E-value=5.1  Score=33.70  Aligned_cols=64  Identities=16%  Similarity=0.186  Sum_probs=45.1

Q ss_pred             HHHHHhhhhhcCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhccCCcCCCCcChhhHHHHH
Q 006490          195 VRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLH  264 (643)
Q Consensus       195 ~~~l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~  264 (643)
                      ...++.+++..|.+..+.++..++...... .+..++..++..+...+.   .+  .+..|+++.|+...
T Consensus        85 ~~~~~~~f~~~D~~~~G~i~~~el~~~l~~-~~~~l~~e~~~~~~~~~d---~~--~dg~Is~~eF~~~~  148 (181)
T d1hqva_          85 ITDWQNVFRTYDRDNSGMIDKNELKQALSG-FGYRLSDQFHDILIRKFD---RQ--GRGQIAFDDFIQGC  148 (181)
T ss_dssp             HHHHHHHHHHHCTTCCSSBCHHHHHHHHHH-HTBCCCHHHHHHHHHHHC---SS--CSSCBCHHHHHHHH
T ss_pred             ccccccccccccccccchhhhHHHHHHHHH-cCCcchhHHHHHHHHHhC---CC--CCCcCcHHHHHHHH
Confidence            345677788889999999999999766654 456778777666555442   22  24458999998664

>d1tiza_ a.39.1.5 (A:) Calmodulin-related protein T21P5.17 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin-related protein T21P5.17
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=87.64  E-value=0.029  Score=40.02  Aligned_cols=58  Identities=19%  Similarity=0.295  Sum_probs=39.8

Q ss_pred             HHHhhhhhcCCCCCCCChhHHhhhhccCCCCC--CCCCCCCCCccccCCcccchhhhhhh
Q 006490          318 LRGIFGLYDIDNDGAVRPAELEDLFLTAPESP--WDEAPYKDAAETTALGNLTLKGFVSK  375 (643)
Q Consensus       318 ~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~p--~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (643)
                      .+++|+.||.|++|.++..|+..++...-..+  .....+......+.+|.|+...|+..
T Consensus         3 ~r~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~~i~~~~~~~D~d~dg~I~~~EF~~~   62 (67)
T d1tiza_           3 AKRVFEKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFFEEIDVDGNGELNADEFTSC   62 (67)
T ss_dssp             HHHHHHHHCTTSSSCEEHHHHHHHHHHTCTTSCHHHHHHHHHHHCCSSSSEECHHHHHHH
T ss_pred             HHHHHHHHCCCCcCcCcHHHHHHHHHHhccccchHHHHHHHHHhCCCCCCeEeHHHHHHH
Confidence            46899999999999999999999988652211  11111222344577788888777654

>d1c7va_ a.39.1.5 (A:) Calcium vector protein {Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium vector protein
species: Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]

Probab=87.50  E-value=0.21  Score=35.32  Aligned_cols=26  Identities=23%  Similarity=0.367  Sum_probs=21.2

Q ss_pred             HHHhhhhhcCCCCCCCCChHHHHHHh
Q 006490          197 ALKRIFIICDHDMDGALNDAELNEFQ  222 (643)
Q Consensus       197 ~l~~~~~~~~~~~~~~l~~~el~~~~  222 (643)
                      .+.++|...|.+.+|.+...|+....
T Consensus         3 el~~~F~~~D~d~~G~I~~~el~~~l   28 (68)
T d1c7va_           3 EILRAFKVFDANGDGVIDFDEFKFIM   28 (68)
T ss_dssp             HHHHHHHHHSCSGGGEECHHHHHHHS
T ss_pred             HHHHHHHHHcCCCcCeEcHHHHHHHH
Confidence            47788899999999999999886643

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=87.41  E-value=0.13  Score=47.44  Aligned_cols=22  Identities=27%  Similarity=0.533  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 006490          425 RCLLFGPQNAGKSALLNSFLER  446 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~  446 (643)
                      -+++.|+||+|||++++++...
T Consensus        47 ~iLL~GppGtGKT~la~~iA~~   68 (256)
T d1lv7a_          47 GVLMVGPPGTGKTLLAKAIAGE   68 (256)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEeeCCCCCCccHHHHHHHHH
Confidence            4899999999999999999864

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.31  E-value=0.13  Score=47.49  Aligned_cols=22  Identities=27%  Similarity=0.596  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 006490          425 RCLLFGPQNAGKSALLNSFLER  446 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~  446 (643)
                      -|++.|+||+|||++++++...
T Consensus        40 giLL~GppGtGKT~l~~ala~~   61 (258)
T d1e32a2          40 GILLYGPPGTGKTLIARAVANE   61 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eeEEecCCCCCchHHHHHHHHH
Confidence            4899999999999999999875

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=87.18  E-value=0.17  Score=49.13  Aligned_cols=22  Identities=27%  Similarity=0.262  Sum_probs=19.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhc
Q 006490           13 VRVVVVGDRGTGKSSLIAAAAT   34 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~   34 (643)
                      -.+++.|+||+|||+|++.+++
T Consensus       155 ~~~~~~g~~~~gk~~~~~~~~~  176 (362)
T d1svma_         155 RYWLFKGPIDSGKTTLAAALLE  176 (362)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999999875

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=87.16  E-value=0.18  Score=43.33  Aligned_cols=25  Identities=32%  Similarity=0.561  Sum_probs=21.8

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCC
Q 006490           12 GVRVVVVGDRGTGKSSLIAAAATES   36 (643)
Q Consensus        12 ~~kI~lvG~~~vGKSsL~n~l~~~~   36 (643)
                      ..-|+|.|++|+||||+.-.|+...
T Consensus        14 g~gvl~~G~sG~GKStlal~l~~~g   38 (176)
T d1kkma_          14 GLGVLITGDSGVGKSETALELVQRG   38 (176)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHcC
Confidence            3458999999999999999998765

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.13  E-value=0.22  Score=46.47  Aligned_cols=26  Identities=19%  Similarity=0.263  Sum_probs=21.7

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHh
Q 006490            8 SSRTGVRVVVVGDRGTGKSSLIAAAA   33 (643)
Q Consensus         8 ~~~~~~kI~lvG~~~vGKSsL~n~l~   33 (643)
                      ..+..+-|.|-|.+|||||||...|.
T Consensus        23 ~~~~P~iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          23 GNKCPLFIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             TCCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCCEEEEeECCCCCCHHHHHHHHH
Confidence            34556889999999999999998764

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.10  E-value=0.18  Score=45.53  Aligned_cols=22  Identities=23%  Similarity=0.608  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 006490          425 RCLLFGPQNAGKSALLNSFLER  446 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~  446 (643)
                      .+++.|+||+||||+++.++..
T Consensus        35 ~lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          35 HMLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChHHHHHHHHHH
Confidence            3889999999999999999864

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.95  E-value=0.17  Score=46.83  Aligned_cols=24  Identities=38%  Similarity=0.457  Sum_probs=21.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCC
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATES   36 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~~   36 (643)
                      -.|.|.|+||+|||+|++++.+.-
T Consensus        42 ~giLL~Gp~GtGKT~l~~ala~~~   65 (265)
T d1r7ra3          42 KGVLFYGPPGCGKTLLAKAIANEC   65 (265)
T ss_dssp             CEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCcchhHHHHHHHHh
Confidence            459999999999999999998753

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=86.87  E-value=0.16  Score=44.92  Aligned_cols=21  Identities=24%  Similarity=0.303  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 006490          425 RCLLFGPQNAGKSALLNSFLE  445 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~  445 (643)
                      -|+|-|..||||||+++.|..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999998874

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=86.87  E-value=0.16  Score=45.18  Aligned_cols=21  Identities=24%  Similarity=0.401  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 006490           14 RVVVVGDRGTGKSSLIAAAAT   34 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~   34 (643)
                      =|+|-|..||||||+++.|..
T Consensus         4 fIviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           4 YIVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            388999999999999988764

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.74  E-value=0.17  Score=45.51  Aligned_cols=22  Identities=14%  Similarity=0.313  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 006490          425 RCLLFGPQNAGKSALLNSFLER  446 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~  446 (643)
                      .+++.|+||+||||+++.+...
T Consensus        38 ~~ll~Gp~G~GKTt~a~~la~~   59 (224)
T d1sxjb2          38 HMIISGMPGIGKTTSVHCLAHE   59 (224)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCchhhHHHHHHH
Confidence            4899999999999999988753

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=86.68  E-value=0.14  Score=51.36  Aligned_cols=21  Identities=24%  Similarity=0.569  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 006490           14 RVVVVGDRGTGKSSLIAAAAT   34 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~   34 (643)
                      +|.++||+|||||-|+++|..
T Consensus        51 NILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          51 NILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999999986

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.49  E-value=0.63  Score=37.75  Aligned_cols=103  Identities=15%  Similarity=0.157  Sum_probs=50.0

Q ss_pred             EEEcCCCCCHHHHHHHHhcC-----CCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490          427 LLFGPQNAGKSALLNSFLER-----PFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (643)
Q Consensus       427 ~ivG~~nvGKSSLln~l~~~-----~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i  501 (643)
                      +|+|+-.|||||-+-+....     .....-.|....++....+...++..........     ..   ....+..+|+ 
T Consensus         6 li~GpMfsGKTt~Li~~~~~~~~~g~~v~~ikp~~D~R~~~~~~~~~~~~~~~~~~~~~-----~~---~~~~~~~~d~-   76 (133)
T d1xbta1           6 VILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLL-----RD---VAQEALGVAV-   76 (133)
T ss_dssp             EEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCC--------------CEEESSG-----GG---GHHHHHTCSE-
T ss_pred             EEEecccCHHHHHHHHHHHHHHHcCCcEEEEecccccCCcceeeecCCCcceeeeeech-----hh---hhhhhcccce-
Confidence            57899999999977665532     2222222333333433333333222211111111     11   2334567785 


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC
Q 006490          502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP  547 (643)
Q Consensus       502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~  547 (643)
                       +.+|-.+-  |.++..+...+...      +++|++.+=..|=..
T Consensus        77 -I~IDEaQF--f~dl~~~~~~~~~~------~~~Viv~GLd~Df~~  113 (133)
T d1xbta1          77 -IGIDEGQF--FPDIVEFCEAMANA------GKTVIVAALDGTFQR  113 (133)
T ss_dssp             -EEESSGGG--CTTHHHHHHHHHHT------TCEEEEECCSBCTTS
T ss_pred             -EEeehhHH--HHHHHHHHHHHHhc------CCcEEEEEecccccc
Confidence             44454443  44566666666654      899999987777543

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.19  E-value=0.2  Score=44.54  Aligned_cols=23  Identities=26%  Similarity=0.317  Sum_probs=18.7

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhc
Q 006490           12 GVRVVVVGDRGTGKSSLIAAAAT   34 (643)
Q Consensus        12 ~~kI~lvG~~~vGKSsL~n~l~~   34 (643)
                      +.=|+|-|..||||||++..|..
T Consensus         3 G~lI~ieG~dGsGKsT~~~~L~~   25 (209)
T d1nn5a_           3 GALIVLEGVDRAGKSTQSRKLVE   25 (209)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHH
Confidence            34588889999999998877654

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.15  E-value=0.18  Score=44.58  Aligned_cols=27  Identities=26%  Similarity=0.343  Sum_probs=22.1

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCC
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATES   36 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~   36 (643)
                      ++.--+.|.|+||+|||+|+..++...
T Consensus        21 ~~G~v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          21 ETGSITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             ETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             cCCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence            344458899999999999999988654

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=86.13  E-value=0.21  Score=42.78  Aligned_cols=26  Identities=31%  Similarity=0.451  Sum_probs=22.2

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCC
Q 006490           12 GVRVVVVGDRGTGKSSLIAAAATESV   37 (643)
Q Consensus        12 ~~kI~lvG~~~vGKSsL~n~l~~~~~   37 (643)
                      ..-|+|.|++|+||||+.-.|....+
T Consensus        15 g~gvli~G~sG~GKS~lal~l~~~G~   40 (177)
T d1knxa2          15 GVGVLLTGRSGIGKSECALDLINKNH   40 (177)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHTTTC
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHcCC
Confidence            44589999999999999999987653

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=85.86  E-value=0.19  Score=43.85  Aligned_cols=26  Identities=23%  Similarity=0.103  Sum_probs=21.7

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcC
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATE   35 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~   35 (643)
                      ++.-.+++.|+|++|||.|+++|+.-
T Consensus        51 PKkn~i~~~GP~~TGKS~f~~sl~~~   76 (205)
T d1tuea_          51 PKKNCLVFCGPANTGKSYFGMSFIHF   76 (205)
T ss_dssp             TTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCccHHHHHHHHHHH
Confidence            44457999999999999999988653

>d1fi5a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus), cardiac isoform [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus), cardiac isoform [TaxId: 9031]

Probab=85.85  E-value=0.72  Score=33.63  Aligned_cols=27  Identities=26%  Similarity=0.444  Sum_probs=22.4

Q ss_pred             HHHHhhhhhcCCCCCCCCChHHHHHHh
Q 006490          196 RALKRIFIICDHDMDGALNDAELNEFQ  222 (643)
Q Consensus       196 ~~l~~~~~~~~~~~~~~l~~~el~~~~  222 (643)
                      +.|..+|...|.+.+|.++..|+....
T Consensus        15 e~l~~~F~~~D~d~~G~I~~~el~~~l   41 (81)
T d1fi5a_          15 EELSDLFRMFDKNADGYIDLEELKIML   41 (81)
T ss_dssp             HHHHHHHHHHCSSCSSEECHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCCcccHHHHHHHH
Confidence            457788999999999999999986643

>d1fi5a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus), cardiac isoform [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus), cardiac isoform [TaxId: 9031]

Probab=85.78  E-value=0.049  Score=40.43  Aligned_cols=59  Identities=20%  Similarity=0.350  Sum_probs=40.3

Q ss_pred             HHHHHHhhhhhcCCCCCCCChhHHhhhhccCCCCCCCCC---CCCCCccccCCcccchhhhhh
Q 006490          315 VEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEA---PYKDAAETTALGNLTLKGFVS  374 (643)
Q Consensus       315 ~~f~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~---~~~~~~~~~~~~~~~~~~~~~  374 (643)
                      ..-|+.+|+.||.|++|.++..|+..++...-. +....   .+......+.+|.|+...|+.
T Consensus        14 ee~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~-~~~~~ev~~~~~~~D~d~dg~I~~~EF~~   75 (81)
T d1fi5a_          14 EEELSDLFRMFDKNADGYIDLEELKIMLQATGE-TITEDDIEELMKDGDKNNDGRIDYDEFLE   75 (81)
T ss_dssp             HHHHHHHHHHHCSSCSSEECHHHHHHHHHTSSS-CCCHHHHHHHHHHHCSSSSSSEEHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCC-CCCHHHHHHHHHHHCCCCCCcEeHHHHHH
Confidence            356899999999999999999999999876532 21111   111223456677777776654

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.63  E-value=0.29  Score=45.59  Aligned_cols=25  Identities=24%  Similarity=0.295  Sum_probs=21.5

Q ss_pred             cCceEEEEEEcCCCCCHHHHHHHHh
Q 006490          420 ERNVFRCLLFGPQNAGKSALLNSFL  444 (643)
Q Consensus       420 ~~~~~ki~ivG~~nvGKSSLln~l~  444 (643)
                      .+.++=|.|.|.+|||||||...|.
T Consensus        24 ~~~P~iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          24 NKCPLFIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCEEEEeECCCCCCHHHHHHHHH
Confidence            4467889999999999999998775

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.58  E-value=0.18  Score=45.22  Aligned_cols=22  Identities=23%  Similarity=0.600  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 006490          425 RCLLFGPQNAGKSALLNSFLER  446 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~  446 (643)
                      .+.+.|+||+||||++..+...
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHHH
Confidence            3789999999999999999864

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=85.58  E-value=0.24  Score=43.87  Aligned_cols=25  Identities=32%  Similarity=0.422  Sum_probs=21.0

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCC
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATESV   37 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~~~   37 (643)
                      +-|+|.|.+|+||||..+.|....+
T Consensus         4 ~iIgitG~igSGKStv~~~l~~~G~   28 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFADLGI   28 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTTC
T ss_pred             EEEEEECCCcCCHHHHHHHHHHCCC
Confidence            4588999999999999998875543

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.56  E-value=0.17  Score=46.88  Aligned_cols=23  Identities=26%  Similarity=0.548  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 006490          425 RCLLFGPQNAGKSALLNSFLERP  447 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~~  447 (643)
                      -|++.|+||+|||+|++++.+.-
T Consensus        43 giLL~Gp~GtGKT~l~~ala~~~   65 (265)
T d1r7ra3          43 GVLFYGPPGCGKTLLAKAIANEC   65 (265)
T ss_dssp             EEEEBCCTTSSHHHHHHHHHHHT
T ss_pred             eEEEECCCCCcchhHHHHHHHHh
Confidence            48999999999999999998754

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=85.51  E-value=0.78  Score=40.32  Aligned_cols=21  Identities=24%  Similarity=0.363  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 006490           14 RVVVVGDRGTGKSSLIAAAAT   34 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~   34 (643)
                      -+.+.|++|+||||++..+..
T Consensus        26 ~lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          26 ALLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            389999999999999997765

>d1jc2a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=85.50  E-value=0.71  Score=33.08  Aligned_cols=26  Identities=35%  Similarity=0.521  Sum_probs=21.5

Q ss_pred             HHHHhhhhhcCCCCCCCCChHHHHHH
Q 006490          196 RALKRIFIICDHDMDGALNDAELNEF  221 (643)
Q Consensus       196 ~~l~~~~~~~~~~~~~~l~~~el~~~  221 (643)
                      +.+..+|...|.+++|.++..++...
T Consensus         9 eel~~~F~~fD~~~~G~I~~~el~~~   34 (75)
T d1jc2a_           9 EELANCFRIFDKNADGFIDIEELGEI   34 (75)
T ss_dssp             HHHHHHHHHHCCSTTSSEEHHHHHHH
T ss_pred             HHHHHHHHHHcCCCcCeEcHHHHHHH
Confidence            45778889999999999999988654

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=85.43  E-value=0.1  Score=50.25  Aligned_cols=21  Identities=57%  Similarity=0.822  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 006490           14 RVVVVGDRGTGKSSLIAAAAT   34 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~   34 (643)
                      .|.|+|+||+|||+|++++..
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~   50 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAA   50 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHH
Confidence            599999999999999999864

>d1s6ca_ a.39.1.5 (A:) Kchip1, Kv4 potassium channel-interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Kchip1, Kv4 potassium channel-interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=85.27  E-value=1.6  Score=36.87  Aligned_cols=133  Identities=10%  Similarity=0.108  Sum_probs=79.3

Q ss_pred             CCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhccCCcCCCCcChhhHHHHHHHHHHcCCccchhHHHhhccCCC
Q 006490          208 DMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGD  287 (643)
Q Consensus       208 ~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~w~~l~~~~~~~  287 (643)
                      +..|.++.+++.......+...-...-++.+.+.+...     .+..|+++.|+.....+......+....+.+.+..+.
T Consensus        26 ~~~G~is~~ef~~~l~~~~~~~~~~~~~~~lf~~~D~~-----~~g~I~~~EFl~~~~~~~~~~~~~~~~~~f~~~D~~~  100 (178)
T d1s6ca_          26 CPSGVVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTT-----QTGSVKFEDFVTALSILLRGTVHEKLRWTFNLYDINK  100 (178)
T ss_dssp             CTTSEECHHHHHHHHHHHSTTSCCHHHHHHHHHHHCTT-----CSSCEEHHHHHHHHHHHHHCCHHHHHHHHHHHHCTTC
T ss_pred             CcCCCccHHHHHHHHHHhCCCCCHHHHHHHHHHHHCCC-----CCCcccHHHHHHHHHHHhccchHHHHHHHHHhhccCC
Confidence            34678888888766555554444444445555444221     1224999999999988888888888888888887776


Q ss_pred             CccccC-CCCC--CCC-C-CCCCCceecchh-HHHHHHHhhhhhcCCCCCCCChhHHhhhhccC
Q 006490          288 DLELRD-DFLP--VPT-K-LSPDQSVELASE-AVEFLRGIFGLYDIDNDGAVRPAELEDLFLTA  345 (643)
Q Consensus       288 ~~~~~~-~~~p--~~~-~-~~~~~~~~ls~~-~~~f~~~~f~~~~~~~~~~l~~~~~~~~~~~~  345 (643)
                      +-.+.. ++..  ..+ . ........++.. .......+|+.+|.|+||.++-+|.....+-.
T Consensus       101 ~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~D~d~DG~Is~~EF~~~i~~~  164 (178)
T d1s6ca_         101 DGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLDEFLESCQED  164 (178)
T ss_dssp             SSCEEHHHHHHHHHHHHHHTC-----------CHHHHHHHHHHHCTTCSSEECHHHHHHHTTSC
T ss_pred             CCeecHHHHHHHHHHHHhhcccccccCCcHHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHC
Confidence            544432 1100  000 0 000011122222 24455679999999999999999987755543

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=85.26  E-value=0.29  Score=43.20  Aligned_cols=24  Identities=21%  Similarity=0.279  Sum_probs=20.5

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCC
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATES   36 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~~   36 (643)
                      +-|+|.|..|+||||+++.|....
T Consensus         3 ~iIgITG~igSGKStv~~~l~~~G   26 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTDLG   26 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHTTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHCC
Confidence            568999999999999999886543

>d1alva_ a.39.1.8 (A:) Calpain small (regulatory) subunit (domain VI) {Pig (Sus scrofa) [TaxId: 9823]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Calpain small (regulatory) subunit (domain VI)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=85.19  E-value=2.7  Score=35.18  Aligned_cols=86  Identities=16%  Similarity=0.185  Sum_probs=60.6

Q ss_pred             HHHHHHhhhhhcCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhccCCcCCCCcChhhHHHHHHHHHHcCCc
Q 006490          194 CVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRL  273 (643)
Q Consensus       194 ~~~~l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~  273 (643)
                      ....+..+|+..|.+.++.++..|+...... .+..++...++.+....    .++  +..|+.+.|+.++..       
T Consensus        75 ~~~~~~~~f~~~D~d~~G~I~~~el~~~L~~-~g~~~~~~~~~~~~~~d----~d~--~G~i~~~EF~~~~~~-------  140 (173)
T d1alva_          75 NIKKWQAIYKQFDVDRSGTIGSSELPGAFEA-AGFHLNEHLYSMIIRRY----SDE--GGNMDFDNFISCLVR-------  140 (173)
T ss_dssp             HHHHHHHHHHHHCTTCCSSBCTTTHHHHHHH-HTCCCCHHHHHHHHHHH----TCS--SSCBCHHHHHHHHHH-------
T ss_pred             hhhHHHHHHHHhccCCCCeecHHHHHHHHHH-HHHhhHHHHHHHhhccc----cCC--CCeEeHHHHHHHHHH-------
Confidence            3455677788899999999999999776554 45566666555444332    222  345999999887531       


Q ss_pred             cchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCC
Q 006490          274 ETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVR  334 (643)
Q Consensus       274 ~~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~~~~~~~~~~l~  334 (643)
                                                               .+-++.+|+.||.|++|.++
T Consensus       141 -----------------------------------------~~~~~~~f~~~D~d~~G~it  160 (173)
T d1alva_         141 -----------------------------------------LDAMFRAFKSLDKDGTGQIQ  160 (173)
T ss_dssp             -----------------------------------------HHHHHHHHHHHSSSCCSEEE
T ss_pred             -----------------------------------------HHHHHHHHHHhCCCCCCcEE
Confidence                                                     23467799999999999874

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=85.08  E-value=0.13  Score=46.83  Aligned_cols=20  Identities=20%  Similarity=0.428  Sum_probs=17.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 006490          426 CLLFGPQNAGKSALLNSFLE  445 (643)
Q Consensus       426 i~ivG~~nvGKSSLln~l~~  445 (643)
                      +++.|++|+||||+++.+..
T Consensus        37 ~Ll~Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          37 YLFSGTRGVGKTSIARLLAK   56 (239)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            78899999999999998764

>d1jc2a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=84.97  E-value=0.047  Score=39.86  Aligned_cols=59  Identities=20%  Similarity=0.338  Sum_probs=40.6

Q ss_pred             HHHHHhhhhhcCCCCCCCChhHHhhhhccCCCCC--CCCCCCCCCccccCCcccchhhhhh
Q 006490          316 EFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESP--WDEAPYKDAAETTALGNLTLKGFVS  374 (643)
Q Consensus       316 ~f~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~p--~~~~~~~~~~~~~~~~~~~~~~~~~  374 (643)
                      +-++.+|+.||.|++|.++-.|+..++......+  +....+......+..|.|+...|+.
T Consensus         9 eel~~~F~~fD~~~~G~I~~~el~~~l~~lg~~~~~~e~~~~~~~~D~d~dg~I~~~EF~~   69 (75)
T d1jc2a_           9 EELANCFRIFDKNADGFIDIEELGEILRATGEHVIEEDIEDLMKDSDKNNDGRIDFDEFLK   69 (75)
T ss_dssp             HHHHHHHHHHCCSTTSSEEHHHHHHHHHHSSSCCCHHHHHHHHHHHCSSSCSEECHHHHHH
T ss_pred             HHHHHHHHHHcCCCcCeEcHHHHHHHHHhcCCCccHHHHHHHHHHhCCCCCCcEeHHHHHH
Confidence            4688999999999999999999999987653222  1111222234456677777777654

>d2jxca1 a.39.1.6 (A:121-215) Eps15 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Eps15 homology domain (EH domain)
domain: Eps15
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.97  E-value=0.055  Score=41.57  Aligned_cols=64  Identities=16%  Similarity=0.205  Sum_probs=45.3

Q ss_pred             ecchhHHHHHHHhhhhhcCCCCCCCChhHHhhhhccCCCCCCC-CCCCCCCccccCCcccchhhhhh
Q 006490          309 ELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWD-EAPYKDAAETTALGNLTLKGFVS  374 (643)
Q Consensus       309 ~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~  374 (643)
                      .+|++-...++++|+.+| |++|.++-.|+..+|... +.|-. -..+-..+..+.+|.++...|.-
T Consensus         3 ~ls~ee~~~y~~~F~~~D-~~~G~i~~~el~~~l~~~-gl~~~~L~~Iw~~~D~~~dG~l~~~EF~~   67 (95)
T d2jxca1           3 AVKPEDKAKYDAIFDSLS-PVNGFLSGDKVKPVLLNS-KLPVDILGRVWELSDIDHDGMLDRDEFAV   67 (95)
T ss_dssp             SSCHHHHHHHHHHHHHTC-CBTTEEEHHHHHHHHTTS-SCCHHHHHHHHHHHCTTCSSEEEHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhC-CCCCceeHHHHHHHHHHc-CCCHHHHHHHHHHhcCCCCCeEcHHHHHH
Confidence            367888899999999999 899999999999999864 33300 00011124457778888877743

>d1wlza1 a.39.1.7 (A:229-311) DJ-1-binding protein, DJBP {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: EF-hand modules in multidomain proteins
domain: DJ-1-binding protein, DJBP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.96  E-value=0.069  Score=39.73  Aligned_cols=61  Identities=13%  Similarity=0.149  Sum_probs=42.3

Q ss_pred             HHHHHhhhhhcCCCCCCCChhHHhhhhccC-CCCC-CCCCCCCCCccccCCcccchhhhhhhh
Q 006490          316 EFLRGIFGLYDIDNDGAVRPAELEDLFLTA-PESP-WDEAPYKDAAETTALGNLTLKGFVSKW  376 (643)
Q Consensus       316 ~f~~~~f~~~~~~~~~~l~~~~~~~~~~~~-~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~w  376 (643)
                      .-+...|+.||.|++|.++.+|+..++... +... ..-..+-.....+.+|.|+...|+..+
T Consensus        20 ~~l~~~F~~~D~~~~G~i~~~ef~~~l~~~~~~l~~~e~~~l~~~~d~~~~g~I~y~eFl~~f   82 (83)
T d1wlza1          20 HAITQEFENFDTMKTNTISREEFRAICNRRVQILTDEQFDRLWNEMPVNAKGRLKYPDFLSRF   82 (83)
T ss_dssp             HHHHHHHHHHCTTCSSCBCHHHHHHHHHHHTCCCCHHHHHHHHTTSCBCTTSCBCHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCCceEChhHHHHHHHHhCCCCChhHHHHHhhccccCCCCcEeHHHHHHHh
Confidence            357789999999999999999999988754 1111 111122233555778888888887764

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=84.93  E-value=1.1  Score=37.25  Aligned_cols=27  Identities=26%  Similarity=0.399  Sum_probs=22.7

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCC
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATES   36 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~   36 (643)
                      ++..-|++-|+=|+|||||++.++..-
T Consensus        31 ~~g~ii~L~G~LGaGKTtfvr~~~~~l   57 (158)
T d1htwa_          31 EKAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCCeEEEEecCCCccHHHHHHHHHhhc
Confidence            455678999999999999999998653

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=84.71  E-value=0.21  Score=46.56  Aligned_cols=23  Identities=26%  Similarity=0.439  Sum_probs=19.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcC
Q 006490           13 VRVVVVGDRGTGKSSLIAAAATE   35 (643)
Q Consensus        13 ~kI~lvG~~~vGKSsL~n~l~~~   35 (643)
                      .-|+|+|.+|+|||||+..+.+.
T Consensus        45 ~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          45 FFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            35789999999999999988754

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.65  E-value=0.23  Score=43.81  Aligned_cols=23  Identities=17%  Similarity=0.280  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 006490          425 RCLLFGPQNAGKSALLNSFLERP  447 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~~  447 (643)
                      -+.|.|+||+|||+|+..++..-
T Consensus        25 v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          25 ITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            47899999999999999988643

>d1jbaa_ a.39.1.5 (A:) Guanylate cyclase activating protein 2, GCAP-2 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Guanylate cyclase activating protein 2, GCAP-2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=84.59  E-value=4.7  Score=34.13  Aligned_cols=120  Identities=16%  Similarity=0.120  Sum_probs=67.2

Q ss_pred             HHHHhhhhhcCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhccCCcCCCCcChhhHHHHHHHHHHcCCccc
Q 006490          196 RALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLET  275 (643)
Q Consensus       196 ~~l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~  275 (643)
                      ..+++++...|.+.++.++..|+-........... ..   .++..++.+..+  .+..++.+.|..+...+.       
T Consensus        58 ~~~~~lf~~~D~d~dG~I~f~Ef~~~l~~~~~~~~-~~---~~~~~F~~~D~d--~~g~i~~~E~~~~~~~~~-------  124 (189)
T d1jbaa_          58 QYVEAMFRAFDTNGDNTIDFLEYVAALNLVLRGTL-EH---KLKWTFKIYDKD--RNGCIDRQELLDIVESIY-------  124 (189)
T ss_dssp             HHHHHHHHHHCCSSSSEECHHHHHHHHHHHSSCCC-TH---HHHHHHHHHCSS--CSSCBCHHHHHHHHHHHH-------
T ss_pred             HHHHHHHHHhccCCCCeEeehhHHHHHHhhcccch-HH---HHHHHHhhhccC--CCCcccHhHHHHHHHHHH-------
Confidence            34677788889999999998887555444433322 22   233334433222  123477776666544222       


Q ss_pred             hhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCChhHHhhhhccCC
Q 006490          276 TWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAP  346 (643)
Q Consensus       276 ~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~~~~~~  346 (643)
                        .+............              ....+.  ..+....+|..+|.|+||.++-+|..++.+..|
T Consensus       125 --~~~~~~~~~~~~~~--------------~~~~~~--~e~~~~~if~~~D~d~dG~Is~~EF~~~~~~~p  177 (189)
T d1jbaa_         125 --KLKKACSVEVEAEQ--------------QGKLLT--PEEVVDRIFLLVDENGDGQLSLNEFVEGARRDK  177 (189)
T ss_dssp             --HHHHHSSCCTTSST--------------TTCCCC--HHHHHHHHHHHHCCSCCSCBCHHHHHHHHTTTT
T ss_pred             --Hhhccccccchhhh--------------hccccc--hHHHHHHHHHHhCCCCCCcEeHHHHHHHHHhCH
Confidence              11111111111000              000111  235667799999999999999999988887655

>d1df0a1 a.39.1.8 (A:515-700) Calpain large subunit, C-terminal domain (domain IV) {Rat (Rattus norvegicus), M-type [TaxId: 10116]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Calpain large subunit, C-terminal domain (domain IV)
species: Rat (Rattus norvegicus), M-type [TaxId: 10116]

Probab=84.56  E-value=1.1  Score=38.39  Aligned_cols=84  Identities=21%  Similarity=0.296  Sum_probs=58.7

Q ss_pred             HHHHHhhhhhcCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhccCCcCCCCcChhhHHHHHHHHHHcCCcc
Q 006490          195 VRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLE  274 (643)
Q Consensus       195 ~~~l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~  274 (643)
                      .+.+..+|...|.+..|.++..|+...... .+..++....+    .+.....++  +..|+++.|+.++.         
T Consensus        90 ~~~~~~~F~~~D~d~sG~I~~~El~~~l~~-~g~~~~~~~~~----~~~~~d~d~--dg~I~f~eFi~~~~---------  153 (186)
T d1df0a1          90 IQKYQKIYREIDVDRSGTMNSYEMRKALEE-AGFKLPCQLHQ----VIVARFADD--ELIIDFDNFVRCLV---------  153 (186)
T ss_dssp             HHHHHHHHHHHCTTCCSCEEGGGHHHHHHH-TTEECCHHHHH----HHHHHHCCS--TTEECHHHHHHHHH---------
T ss_pred             HHHHHHHHHhhCCCCCCcccHHHHHHHHHH-HHhcccHHHHH----HHHHHHcCC--CCeEeHHHHHHHHH---------
Confidence            355778899999999999999999766543 34455554333    333332322  44599999988753         


Q ss_pred             chhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCC
Q 006490          275 TTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAV  333 (643)
Q Consensus       275 ~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~~~~~~~~~~l  333 (643)
                                                             -.+.++++|+.||.|++|.+
T Consensus       154 ---------------------------------------~l~~~~~~F~~~D~~~~G~i  173 (186)
T d1df0a1         154 ---------------------------------------RLEILFKIFKQLDPENTGTI  173 (186)
T ss_dssp             ---------------------------------------HHHHHHHHHHHHCTTCCSEE
T ss_pred             ---------------------------------------HHHHHHHHHHHhCCCCCCcE
Confidence                                                   13467889999999999975

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=84.55  E-value=0.18  Score=44.03  Aligned_cols=22  Identities=36%  Similarity=0.487  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 006490          425 RCLLFGPQNAGKSALLNSFLER  446 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~~  446 (643)
                      -+++.|+||+|||.|+++|+.-
T Consensus        55 ~i~~~GP~~TGKS~f~~sl~~~   76 (205)
T d1tuea_          55 CLVFCGPANTGKSYFGMSFIHF   76 (205)
T ss_dssp             EEEEESCGGGCHHHHHHHHHHH
T ss_pred             EEEEECCCCccHHHHHHHHHHH
Confidence            5899999999999999988753

>d1juoa_ a.39.1.8 (A:) Sorcin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Sorcin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.51  E-value=2.5  Score=35.46  Aligned_cols=63  Identities=16%  Similarity=0.310  Sum_probs=43.5

Q ss_pred             HHHHHhhhhhcCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhccCCcCCCCcChhhHHHHHH
Q 006490          195 VRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHA  265 (643)
Q Consensus       195 ~~~l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~  265 (643)
                      .......+...|.+..+.++.+|+...... .+..++...+..+   +.+...    +..++.+.|+.++.
T Consensus        76 ~~~~~~~f~~~D~d~sG~i~~~El~~~l~~-~g~~ls~~~~~~l---~~~~d~----~g~i~~~eF~~~~~  138 (172)
T d1juoa_          76 LNGWRQHFISFDTDRSGTVDPQELQKALTT-MGFRLSPQAVNSI---AKRYST----NGKITFDDYIACCV  138 (172)
T ss_dssp             HHHHHHHHHTTCTTCCSEECHHHHHHHHHH-TTCCCCHHHHHHH---HHHTCS----SSSEEHHHHHHHHH
T ss_pred             hhhhhHHHHHhCcCCCCcCCHHHHHHHHHH-HHHhhhHHHHHHH---HHHHHh----cCCcCHHHHHHHHH
Confidence            345667788999999999999999776544 4556676655554   444322    23499999988765

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.43  E-value=0.16  Score=45.97  Aligned_cols=22  Identities=18%  Similarity=0.404  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 006490           14 RVVVVGDRGTGKSSLIAAAATE   35 (643)
Q Consensus        14 kI~lvG~~~vGKSsL~n~l~~~   35 (643)
                      .|+|-|..||||||+++.|...
T Consensus         4 ~I~ieG~dGsGKST~~~~L~~~   25 (241)
T d1p5zb_           4 KISIEGNIAAGKSTFVNILKQL   25 (241)
T ss_dssp             EEEEECSTTSSHHHHHTTTGGG
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5999999999999999987763

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=84.40  E-value=0.22  Score=48.35  Aligned_cols=21  Identities=38%  Similarity=0.645  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 006490          425 RCLLFGPQNAGKSALLNSFLE  445 (643)
Q Consensus       425 ki~ivG~~nvGKSSLln~l~~  445 (643)
                      -+++.|+||+|||+|.+++.+
T Consensus       156 ~~~~~g~~~~gk~~~~~~~~~  176 (362)
T d1svma_         156 YWLFKGPIDSGKTTLAAALLE  176 (362)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999875

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=84.34  E-value=0.27  Score=41.83  Aligned_cols=26  Identities=35%  Similarity=0.518  Sum_probs=22.4

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCC
Q 006490           11 TGVRVVVVGDRGTGKSSLIAAAATES   36 (643)
Q Consensus        11 ~~~kI~lvG~~~vGKSsL~n~l~~~~   36 (643)
                      ...-|+|.|++|+||||+.-.|+...
T Consensus        14 ~g~gvli~G~sg~GKS~la~~l~~~g   39 (169)
T d1ko7a2          14 YGVGVLITGDSGIGKSETALELIKRG   39 (169)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHTT
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHcC
Confidence            34569999999999999999988765

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=84.32  E-value=0.28  Score=42.01  Aligned_cols=26  Identities=23%  Similarity=0.310  Sum_probs=22.3

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCC
Q 006490          423 VFRCLLFGPQNAGKSALLNSFLERPF  448 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~~~~~  448 (643)
                      ..=|++.|++|+||||+.-.|+....
T Consensus        14 g~gvl~~G~sG~GKStlal~l~~~g~   39 (176)
T d1kkma_          14 GLGVLITGDSGVGKSETALELVQRGH   39 (176)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHHTTC
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHcCC
Confidence            34589999999999999999987654

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=84.27  E-value=0.28  Score=40.29  Aligned_cols=44  Identities=16%  Similarity=0.145  Sum_probs=25.4

Q ss_pred             hccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC
Q 006490          495 LASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP  547 (643)
Q Consensus       495 ~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~  547 (643)
                      ...+|+|  .+|=.+--+ +.+..+...+...      +++|++.+-..|-..
T Consensus        77 ~~~~dvI--~IDE~QFf~-d~i~~~~~~~~~~------g~~Viv~GLd~Df~~  120 (139)
T d2b8ta1          77 NDETKVI--GIDEVQFFD-DRICEVANILAEN------GFVVIISGLDKNFKG  120 (139)
T ss_dssp             CTTCCEE--EECSGGGSC-THHHHHHHHHHHT------TCEEEEECCSBCTTS
T ss_pred             ccCcCEE--Eechhhhcc-hhHHHHHHHHHhc------CceEEEEEecccccc
Confidence            3467754  446544322 2234444555544      899999998887543

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=84.27  E-value=0.43  Score=39.92  Aligned_cols=51  Identities=18%  Similarity=0.212  Sum_probs=30.6

Q ss_pred             HHhhccCCEEEEEEECCCcccHH---------HHHHHHHHHHHhcCC-CCcEEEEEecccC
Q 006490           77 NEELKRADAVVLTYACNQQSTLS---------RLSSYWLPELRRLEI-KVPIIVAGCKLDL  127 (643)
Q Consensus        77 ~~~~~~ad~il~v~d~~~~~s~~---------~~~~~~~~~l~~~~~-~~pvilv~NK~D~  127 (643)
                      ...++++|++++........+.+         .+...+.+.+.++++ +.-++++.|-+|.
T Consensus        75 ~~~~~~advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsNPvDv  135 (154)
T d1y7ta1          75 KVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANT  135 (154)
T ss_dssp             HHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHH
T ss_pred             hhhcccccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecCcHHH
Confidence            46789999999988655432211         111235555666654 4445667777773

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=84.26  E-value=0.31  Score=43.13  Aligned_cols=25  Identities=28%  Similarity=0.424  Sum_probs=21.0

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCC
Q 006490          424 FRCLLFGPQNAGKSALLNSFLERPF  448 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~~~  448 (643)
                      +-|+|.|.+||||||+.+.|....+
T Consensus         4 ~iIgitG~igSGKStv~~~l~~~G~   28 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFADLGI   28 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTTC
T ss_pred             EEEEEECCCcCCHHHHHHHHHHCCC
Confidence            5688999999999999998875443

>d1fpwa_ a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Frequenin (neuronal calcium sensor 1)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.20  E-value=2.6  Score=35.99  Aligned_cols=115  Identities=16%  Similarity=0.127  Sum_probs=68.1

Q ss_pred             HHHhhhhhcCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhccCCcCCCCcChhhHHHHHHHHHHcCCccch
Q 006490          197 ALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETT  276 (643)
Q Consensus       197 ~l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~  276 (643)
                      ..+++|...|.+.++.++..|+-.......... ..   +.++..++.+-.++  +..++.+.|..+...+......   
T Consensus        64 ~~~~if~~~D~~~~G~I~~~Ef~~~~~~~~~~~-~~---e~~~~~F~~~D~d~--dG~is~~E~~~~~~~~~~~~~~---  134 (190)
T d1fpwa_          64 FANHLFTVFDKDNNGFIHFEEFITVLSTTSRGT-LE---EKLSWAFELYDLNH--DGYITFDEMLTIVASVYKMMGS---  134 (190)
T ss_dssp             HHHHHHHTCCSSCSSEECHHHHHHHHHHHSCCC-ST---HHHHHHHHHHCSSC--SSEEEHHHHHHHHHHHHTTSCS---
T ss_pred             HHHHHHHHhCcCCCCcccHHHHHHHHHHHccCc-hH---HHHHHHHHHhccCC--CCcCcHHHHHHHHHHHHHhccc---
Confidence            356778888888899888888765544433322 22   33444455543322  3337777777665543311110   


Q ss_pred             hHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCChhHHhhhhccCCC
Q 006490          277 WAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPE  347 (643)
Q Consensus       277 w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~  347 (643)
                               ...        |     ..+     ..........+|+.+|.|+||.++-+|........|.
T Consensus       135 ---------~~~--------~-----~~~-----~~~~~~~v~~if~~~D~d~dG~Is~~EF~~~~~~~p~  178 (190)
T d1fpwa_         135 ---------MVT--------L-----NED-----EATPEMRVKKIFKLMDKNEDGYITLDEFREGSKVDPS  178 (190)
T ss_dssp             ---------TTS--------S-----SCC-----CCCHHHHHHHHHHHHTTTCSSEEEHHHHHHHHHSSTT
T ss_pred             ---------ccC--------C-----Cch-----hhhHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHCHH
Confidence                     000        0     000     0112356677999999999999999999888776554

>d2pvba_ a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [TaxId: 8010]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Parvalbumin
species: Pike (Esox lucius) [TaxId: 8010]

Probab=84.19  E-value=0.7  Score=35.81  Aligned_cols=59  Identities=14%  Similarity=0.207  Sum_probs=37.9

Q ss_pred             HHHHHhhhhhcCCCCCCCChhHHhhhhccCCC----CCCC-CCCCCCCccccCCcccchhhhhh
Q 006490          316 EFLRGIFGLYDIDNDGAVRPAELEDLFLTAPE----SPWD-EAPYKDAAETTALGNLTLKGFVS  374 (643)
Q Consensus       316 ~f~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~----~p~~-~~~~~~~~~~~~~~~~~~~~~~~  374 (643)
                      .-++.+|+.||.|++|.++..|+..++...-.    .+.. ...+......+.+|.|+...|..
T Consensus        40 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~~~~~~~~~~~~~~l~~~~D~d~dG~I~~~EF~~  103 (107)
T d2pvba_          40 DDVKKAFYVIDQDKSGFIEEDELKLFLQNFSPSARALTDAETKAFLADGDKDGDGMIGVDEFAA  103 (107)
T ss_dssp             HHHHHHHHHHCTTCSSSBCHHHHHTGGGGTCTTSCCCCHHHHHHHHHHHCTTCSSSBCHHHHHH
T ss_pred             HHHHHHHHhhccCCCCcCcHHHHHHHHHHhhcccccCCHHHHHHHHHHhCCCCCCcEeHHHHHH
Confidence            45889999999999999999999988766421    1110 01111223346667777766653

>d1avsa_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=84.03  E-value=1.5  Score=31.82  Aligned_cols=70  Identities=20%  Similarity=0.301  Sum_probs=52.9

Q ss_pred             chHHHHHHHHhhhhhcCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhccCCcCCCCcChhhHHHHHH
Q 006490          190 LKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHA  265 (643)
Q Consensus       190 ~~~~~~~~l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~  265 (643)
                      +++.-...++..|...|.+++|.++..|+..... ..+..++..++..+...+.   .++  +..|+++.|+.++.
T Consensus         8 Lt~~~i~el~~~F~~~D~d~~G~I~~~el~~~l~-~~g~~~s~~e~~~~~~~~D---~d~--~g~I~~~eF~~~m~   77 (81)
T d1avsa_           8 LSEEMIAEFKAAFDMFDADGGGDISTKELGTVMR-MLGQNPTKEELDAIIEEVD---EDG--SGTIDFEEFLVMMV   77 (81)
T ss_dssp             BCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHH-HTTCCCCHHHHHHHHHHHC---TTC--CSSEEHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHcCCCCCeEchhHHHHHHH-HcCCCCCHHHHHHHHHHhC---CCC--CCeEeHHHHHHHHH
Confidence            4556666788999999999999999999976654 4678888888776655542   222  33599999998865

>d1bjfa_ a.39.1.5 (A:) Neurocalcin {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Neurocalcin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=84.03  E-value=0.79  Score=39.07  Aligned_cols=135  Identities=14%  Similarity=0.090  Sum_probs=84.1

Q ss_pred             CCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhccCCcCCCCcChhhHHHHHHHHHHcCCccchhHHHhhccCCC
Q 006490          208 DMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGD  287 (643)
Q Consensus       208 ~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~w~~l~~~~~~~  287 (643)
                      +.++.+...++.......+........++.+...+..   .  .+.-++++.|+.....+......+..+.+.+.+..+.
T Consensus        34 ~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~lf~~~d~---~--~~g~i~~~eFl~~~~~~~~~~~~~~~~~~f~~~D~d~  108 (181)
T d1bjfa_          34 CPSGHLSMEEFKKIYGNFFPYGDASKFAEHVFRTFDA---N--GDGTIDFREFIIALSVTSRGKLEQKLKWAFSMYDLDG  108 (181)
T ss_dssp             STTSEEEHHHHHHHHTTTSSSSCCHHHHHHHHHHHCS---S--CSSEEEHHHHHHHHHHHTSSCHHHHHHHHHHHHCTTC
T ss_pred             CCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhcCC---C--CCCcEeHHHHHHHHHHHhhhchHHHHHHHHHHhccCC
Confidence            4577888888877666655555554444555444422   1  1224889999998888877777777888888888776


Q ss_pred             CccccCC-CC---CCCCCCCCCC-ce-ecchhHHHHHHHhhhhhcCCCCCCCChhHHhhhhccCCC
Q 006490          288 DLELRDD-FL---PVPTKLSPDQ-SV-ELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPE  347 (643)
Q Consensus       288 ~~~~~~~-~~---p~~~~~~~~~-~~-~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~  347 (643)
                      +..+..+ +.   .......... .. .........+..+|+.+|.|+||.++-+|..++.+..|.
T Consensus       109 dg~i~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~D~d~dG~Is~~EF~~~~~~~p~  174 (181)
T d1bjfa_         109 NGYISKAEMLEIVQAIYKMVSSVMKMPEDESTPEKRTEKIFRQMDTNRDGKLSLEEFIRGAKSDPS  174 (181)
T ss_dssp             SSCEEHHHHHHHHHHHHTTCCCTTTSCGGGSSHHHHHHHHHHHSCTTCSSEECHHHHHHHHHHCTH
T ss_pred             CCeecHHHHHHHHHHHhhhccccccCCcccccHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHhCHH
Confidence            5554431 11   0000111100 00 111223346677999999999999999999888776653

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=84.00  E-value=0.073  Score=46.79  Aligned_cols=19  Identities=37%  Similarity=0.555  Sum_probs=17.0

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 006490          426 CLLFGPQNAGKSALLNSFL  444 (643)
Q Consensus       426 i~ivG~~nvGKSSLln~l~  444 (643)
                      .+|+|+.|+||||++.++.
T Consensus        27 tvi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          27 TTLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHHSCCSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            4688999999999999985

>d1wlza1 a.39.1.7 (A:229-311) DJ-1-binding protein, DJBP {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: EF-hand modules in multidomain proteins
domain: DJ-1-binding protein, DJBP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.96  E-value=1.3  Score=32.12  Aligned_cols=28  Identities=14%  Similarity=0.172  Sum_probs=22.8

Q ss_pred             HHHHHHhhhhhcCCCCCCCCChHHHHHH
Q 006490          194 CVRALKRIFIICDHDMDGALNDAELNEF  221 (643)
Q Consensus       194 ~~~~l~~~~~~~~~~~~~~l~~~el~~~  221 (643)
                      ....+.+.|...|.+..|.++.+|+...
T Consensus        18 ~~~~l~~~F~~~D~~~~G~i~~~ef~~~   45 (83)
T d1wlza1          18 HYHAITQEFENFDTMKTNTISREEFRAI   45 (83)
T ss_dssp             THHHHHHHHHHHCTTCSSCBCHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCCceEChhHHHHH
Confidence            3456788899999999999999987653

>d1y1xa_ a.39.1.8 (A:) Programmed cell death 6 protein-like protein {Leishmania major [TaxId: 5664]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Programmed cell death 6 protein-like protein
species: Leishmania major [TaxId: 5664]

Probab=83.90  E-value=4.2  Score=34.32  Aligned_cols=64  Identities=14%  Similarity=0.163  Sum_probs=46.0

Q ss_pred             HHHHhhhhhcCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhccCCcCCCCcChhhHHHHHH
Q 006490          196 RALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHA  265 (643)
Q Consensus       196 ~~l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~  265 (643)
                      ..+...|...|.+.++.++.+|+..... .++..++..+++.+.+   ....++  +..|+.+.|+.+..
T Consensus        84 ~~~~~~F~~~D~~~~g~I~~~el~~~l~-~~g~~ls~~e~~~i~~---~~d~~~--dg~I~~~eF~~~~~  147 (182)
T d1y1xa_          84 LSMREGFRKRDSSGDGRLDSNEVRAALL-SSGYQVSEQTFQALMR---KFDRQR--RGSLGFDDYVELSI  147 (182)
T ss_dssp             HHHHHHHHHHCTTSSSCBCHHHHHHHHH-TTSCCCCHHHHHHHHH---HHCTTC--SSSBCHHHHHHHHH
T ss_pred             cccccchhccccccchhhhhHHHHHHHH-HhCCchhHHHHHHHHh---hcccCC--CCCcCHHHHHHHHH
Confidence            4466778888999999999999876654 4677888877766544   333332  44599999998853

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.83  E-value=0.24  Score=44.69  Aligned_cols=49  Identities=24%  Similarity=0.175  Sum_probs=31.9

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCC
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSL   70 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~   70 (643)
                      ++.--+.|.|+||+|||+|+..++........            ....+..+.++|+....
T Consensus        32 ~~G~~~li~G~pGsGKT~l~lq~~~~~~~~~~------------~~~~~~~~~~i~~~~~~   80 (251)
T d1szpa2          32 ETGSITELFGEFRTGKSQLCHTLAVTCQIPLD------------IGGGEGKCLYIDTEGTF   80 (251)
T ss_dssp             ESSSEEEEEESTTSSHHHHHHHHTTTTTSCTT------------TTCCSCEEEEEESSSCC
T ss_pred             cCCeEEEEEcCCCCCHHHHHHHHHHHhhhhhh------------hccCCceEEEEeecchH
Confidence            34445889999999999999998765421111            11223457777877643

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=83.74  E-value=0.2  Score=42.93  Aligned_cols=27  Identities=22%  Similarity=0.239  Sum_probs=22.6

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCC
Q 006490          423 VFRCLLFGPQNAGKSALLNSFLERPFS  449 (643)
Q Consensus       423 ~~ki~ivG~~nvGKSSLln~l~~~~~~  449 (643)
                      ..=|+|.|++|+||||+.-.|+.....
T Consensus        15 g~gvli~G~sG~GKS~lal~l~~~G~~   41 (177)
T d1knxa2          15 GVGVLLTGRSGIGKSECALDLINKNHL   41 (177)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHTTTCE
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHcCCc
Confidence            345899999999999999999876543

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=83.73  E-value=0.27  Score=46.62  Aligned_cols=21  Identities=33%  Similarity=0.596  Sum_probs=17.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 006490           15 VVVVGDRGTGKSSLIAAAATE   35 (643)
Q Consensus        15 I~lvG~~~vGKSsL~n~l~~~   35 (643)
                      +++.|+||||||.|++.|.+.
T Consensus       126 ~l~~G~pG~GKT~la~ala~~  146 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGEA  146 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHHH
Confidence            445799999999999999764

>d1w7jb1 a.39.1.5 (B:11-149) Myosin Essential Chain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Myosin Essential Chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.72  E-value=0.14  Score=42.01  Aligned_cols=105  Identities=19%  Similarity=0.230  Sum_probs=68.3

Q ss_pred             HHhhhhhcCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhccCCcCCCCcChhhHHHHHHHHHHcCCccchh
Q 006490          198 LKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTW  277 (643)
Q Consensus       198 l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~w  277 (643)
                      +++.|...|.+.+|.++..|+..... ..+...+..++..+...+.   ........++++.|..+........      
T Consensus         2 ~ke~F~~~D~d~~G~I~~~el~~~l~-~lg~~~t~~e~~~~~~~~~---~~~~~~~~i~~~ef~~~~~~~~~~~------   71 (139)
T d1w7jb1           2 FKEAFELFDRVGDGKILYSQCGDVMR-ALGQNPTNAEVLKVLGNPK---SDELKSRRVDFETFLPMLQAVAKNR------   71 (139)
T ss_dssp             HHHHHHHHCCSSSSEEESTTHHHHHH-HTTCCCCHHHHHHHTTCCC---HHHHTTCEEEHHHHHHHHHHHCC--------
T ss_pred             HHHHHHHHhCCCCCeECHHHHHHHHH-HhccCCCHHHHHHHHHHHh---cccccCCceeeeccchhhHhhhhhc------
Confidence            46678889999999999999876553 4667777776665543221   1111234577788776644211000      


Q ss_pred             HHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCChhHHhhhhccC
Q 006490          278 AVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTA  345 (643)
Q Consensus       278 ~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~~~~~  345 (643)
                                                       ......-++..|+.+|.|++|.++.+|+..++...
T Consensus        72 ---------------------------------~~~~~~~l~~aF~~~D~d~~G~I~~~el~~~l~~~  106 (139)
T d1w7jb1          72 ---------------------------------GQGTYEDYLEGFRVFDKEGNGKVMGAELRHVLTTL  106 (139)
T ss_dssp             ---------------------------------------CCHHHHHTTCTTSSSEEEHHHHHHHHHHS
T ss_pred             ---------------------------------cccHHHHHHHhhhhccCCCCCeEeHHHHHHHHHHh
Confidence                                             00011125678999999999999999999999776

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=83.60  E-value=0.37  Score=45.76  Aligned_cols=25  Identities=16%  Similarity=0.308  Sum_probs=20.9

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhc
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAAT   34 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~   34 (643)
                      ++.-.++++|++|||||.|+..|..
T Consensus        50 ~p~~~~lf~Gp~GvGKT~lak~la~   74 (315)
T d1r6bx3          50 KPVGSFLFAGPTGVGKTEVTVQLSK   74 (315)
T ss_dssp             SCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCceEEEEECCCcchhHHHHHHHHh
Confidence            3444689999999999999999875

>d1oqpa_ a.39.1.5 (A:) Caltractin (centrin 2) {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Caltractin (centrin 2)
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=83.52  E-value=0.058  Score=39.50  Aligned_cols=60  Identities=18%  Similarity=0.200  Sum_probs=41.8

Q ss_pred             HHHHHHhhhhhcCCCCCCCChhHHhhhhccCCC-CC-CCCCCCCCCccccCCcccchhhhhh
Q 006490          315 VEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPE-SP-WDEAPYKDAAETTALGNLTLKGFVS  374 (643)
Q Consensus       315 ~~f~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~-~p-~~~~~~~~~~~~~~~~~~~~~~~~~  374 (643)
                      .+-++++|+.||.|++|.++..|+..++...-. ++ .....+......+.+|.|+...|+.
T Consensus         8 ~e~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~e~~~~~~~~D~d~~G~I~~~EF~~   69 (77)
T d1oqpa_           8 REEILKAFRLFDDDNSGTITIKDLRRVAKELGENLTEEELQEMIAEADRNDDNEIDEDEFIR   69 (77)
T ss_dssp             HHHHHHHHHHHCTTCSSSEEHHHHHHHHHHHTCCCCHHHHHHHHHHHCCSSSSEECHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCCEechHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHH
Confidence            456899999999999999999999999887522 22 1111122234557778888877754

>d1fw4a_ a.39.1.5 (A:) Calmodulin {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=83.50  E-value=1.1  Score=30.89  Aligned_cols=26  Identities=27%  Similarity=0.510  Sum_probs=21.4

Q ss_pred             HHHHhhhhhcCCCCCCCCChHHHHHH
Q 006490          196 RALKRIFIICDHDMDGALNDAELNEF  221 (643)
Q Consensus       196 ~~l~~~~~~~~~~~~~~l~~~el~~~  221 (643)
                      +.|+++|...|.+.+|.++.+++...
T Consensus         3 eel~~aF~~fD~d~~G~I~~~el~~~   28 (65)
T d1fw4a_           3 EEIREAFRVFDKDGNGYISAAELRHV   28 (65)
T ss_dssp             HHHHHHHHHHCTTCSSEECHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCCcCCHHHHHHH
Confidence            34778899999999999999988653

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=83.50  E-value=0.34  Score=42.73  Aligned_cols=23  Identities=26%  Similarity=0.379  Sum_probs=20.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 006490          424 FRCLLFGPQNAGKSALLNSFLER  446 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~~  446 (643)
                      +-|+|.|..||||||+.+.|...
T Consensus         3 ~iIgITG~igSGKStv~~~l~~~   25 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTDL   25 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHC
Confidence            56899999999999999988643

>d1c07a_ a.39.1.6 (A:) Eps15 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Eps15 homology domain (EH domain)
domain: Eps15
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.39  E-value=2  Score=32.15  Aligned_cols=68  Identities=22%  Similarity=0.278  Sum_probs=48.8

Q ss_pred             HHHHHHHhhhhhcCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhccCCcCCCCcChhhHHHHHHHHH
Q 006490          193 RCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFI  268 (643)
Q Consensus       193 ~~~~~l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~  268 (643)
                      +-...++.+|...|.+++|.++.+|+..+...   ..+....++.+-+.+...     .+..++.+.|+..+++..
T Consensus         7 ~e~~~~~~~F~~~D~d~~G~is~~e~~~~l~~---~~l~~~~l~~i~~~~D~d-----~dG~l~~~EF~~am~Li~   74 (95)
T d1c07a_           7 AEKAKYDEIFLKTDKDMDGFVSGLEVREIFLK---TGLPSTLLAHIWSLCDTK-----DCGKLSKDQFALAFHLIS   74 (95)
T ss_dssp             HHHHHHHHHHHHHCTTCSSEECHHHHHHHHHT---TTCCHHHHHHHHHHHCTT-----CSSSEETTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHh---cCCCHHHHHHHHHHhCCC-----CCCeEcHHHHHHHHHHHH
Confidence            34556788999999999999999999776543   346666666665554322     244599999998887654

>d1oqpa_ a.39.1.5 (A:) Caltractin (centrin 2) {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Caltractin (centrin 2)
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=83.37  E-value=0.91  Score=32.59  Aligned_cols=26  Identities=19%  Similarity=0.405  Sum_probs=21.5

Q ss_pred             HHHHhhhhhcCCCCCCCCChHHHHHH
Q 006490          196 RALKRIFIICDHDMDGALNDAELNEF  221 (643)
Q Consensus       196 ~~l~~~~~~~~~~~~~~l~~~el~~~  221 (643)
                      +.++++|...|.+.++.++..|+...
T Consensus         9 e~l~~~F~~~D~d~~G~I~~~el~~~   34 (77)
T d1oqpa_           9 EEILKAFRLFDDDNSGTITIKDLRRV   34 (77)
T ss_dssp             HHHHHHHHHHCTTCSSSEEHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCCEechHHHHHH
Confidence            45788899999999999999987553

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=83.28  E-value=0.27  Score=43.52  Aligned_cols=20  Identities=30%  Similarity=0.421  Sum_probs=18.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 006490          426 CLLFGPQNAGKSALLNSFLE  445 (643)
Q Consensus       426 i~ivG~~nvGKSSLln~l~~  445 (643)
                      |+|-|..||||||+++.|..
T Consensus         5 IviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            88899999999999998874

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=83.01  E-value=0.18  Score=46.94  Aligned_cols=23  Identities=22%  Similarity=0.310  Sum_probs=17.0

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhc
Q 006490           12 GVRVVVVGDRGTGKSSLIAAAAT   34 (643)
Q Consensus        12 ~~kI~lvG~~~vGKSsL~n~l~~   34 (643)
                      +.-|+|.|.+|+||||+.++|..
T Consensus         4 ~pIIgIaG~SGSGKTTva~~l~~   26 (288)
T d1a7ja_           4 HPIISVTGSSGAGTSTVKHTFDQ   26 (288)
T ss_dssp             SCEEEEESCC---CCTHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHHH
Confidence            34599999999999999998865

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=82.90  E-value=0.2  Score=47.91  Aligned_cols=27  Identities=19%  Similarity=0.240  Sum_probs=23.6

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcC
Q 006490            9 SRTGVRVVVVGDRGTGKSSLIAAAATE   35 (643)
Q Consensus         9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~   35 (643)
                      .++.++|+|=|.-||||||+++.|...
T Consensus         2 ~m~~lrI~IEG~iGsGKSTl~~~L~~~   28 (331)
T d1osna_           2 KMGVLRIYLDGAYGIGKTTAAEEFLHH   28 (331)
T ss_dssp             CEEEEEEEEEESSSSCTTHHHHHHHHT
T ss_pred             CccceEEEEECCCCCCHHHHHHHHHHH
Confidence            356689999999999999999999764

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=82.89  E-value=0.29  Score=44.47  Aligned_cols=26  Identities=31%  Similarity=0.357  Sum_probs=21.3

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCC
Q 006490           11 TGVRVVVVGDRGTGKSSLIAAAATES   36 (643)
Q Consensus        11 ~~~kI~lvG~~~vGKSsL~n~l~~~~   36 (643)
                      ..--++|.|+||+|||+|...++...
T Consensus        35 ~G~~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          35 TQAITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            34458899999999999999887654

>d1pvaa_ a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [TaxId: 8010]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Parvalbumin
species: Pike (Esox lucius) [TaxId: 8010]

Probab=82.83  E-value=1.5  Score=33.97  Aligned_cols=26  Identities=27%  Similarity=0.482  Sum_probs=21.2

Q ss_pred             HHHHhhhhhcCCCCCCCCChHHHHHH
Q 006490          196 RALKRIFIICDHDMDGALNDAELNEF  221 (643)
Q Consensus       196 ~~l~~~~~~~~~~~~~~l~~~el~~~  221 (643)
                      ..++++|...|.+++|.++.+|+...
T Consensus        41 ~~~~~~F~~~D~d~~G~I~~~El~~~   66 (109)
T d1pvaa_          41 NDVKKVFKAIDADASGFIEEEELKFV   66 (109)
T ss_dssp             HHHHHHHHHHCTTCSSSBCHHHHHTG
T ss_pred             HHHHHHhhCccCCCcCeEcHHHHHHH
Confidence            34677899999999999999997553

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=82.60  E-value=0.31  Score=44.06  Aligned_cols=26  Identities=23%  Similarity=0.376  Sum_probs=21.7

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcC
Q 006490           10 RTGVRVVVVGDRGTGKSSLIAAAATE   35 (643)
Q Consensus        10 ~~~~kI~lvG~~~vGKSsL~n~l~~~   35 (643)
                      ++.--++|.|+||+|||+|+..++..
T Consensus        24 ~~gsl~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          24 FKDSIILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             ESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             cCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence            34556889999999999999988765

>d1snla_ a.39.1.7 (A:) Nucleobindin 1 (CALNUC) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: EF-hand modules in multidomain proteins
domain: Nucleobindin 1 (CALNUC)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.39  E-value=0.44  Score=36.39  Aligned_cols=30  Identities=17%  Similarity=0.132  Sum_probs=24.7

Q ss_pred             hHHHHHHHhhhhhcCCCCCCCChhHHhhhh
Q 006490          313 EAVEFLRGIFGLYDIDNDGAVRPAELEDLF  342 (643)
Q Consensus       313 ~~~~f~~~~f~~~~~~~~~~l~~~~~~~~~  342 (643)
                      .-.+.+..+|+.+|.|+||.++-+|.....
T Consensus        65 ~~~~~v~~~~~~~D~d~DG~Is~~EF~~~~   94 (99)
T d1snla_          65 ERLRMREHVMKNVDTNQDRLVTLEEFLAST   94 (99)
T ss_dssp             HHHHHHHHHHHHTCSSCSSEEEHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCCcCcHHHHHHHH
Confidence            345577889999999999999999986653

>d5pala_ a.39.1.4 (A:) Parvalbumin {Leopard shark (Triakis semifasciata) [TaxId: 30493]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Parvalbumin
species: Leopard shark (Triakis semifasciata) [TaxId: 30493]

Probab=82.22  E-value=0.72  Score=35.89  Aligned_cols=59  Identities=15%  Similarity=0.281  Sum_probs=38.5

Q ss_pred             HHHHHhhhhhcCCCCCCCChhHHhhhhccC--CCCCCC---CCCCCCCccccCCcccchhhhhh
Q 006490          316 EFLRGIFGLYDIDNDGAVRPAELEDLFLTA--PESPWD---EAPYKDAAETTALGNLTLKGFVS  374 (643)
Q Consensus       316 ~f~~~~f~~~~~~~~~~l~~~~~~~~~~~~--~~~p~~---~~~~~~~~~~~~~~~~~~~~~~~  374 (643)
                      .-++.+|+.||.|++|.++.+|+..++...  .+.+..   ..........+.+|.|+...|..
T Consensus        41 ~~l~~~F~~~D~d~~G~I~~~El~~~l~~l~~~g~~~~~~e~~~~~~~~D~d~dG~I~~~EF~~  104 (109)
T d5pala_          41 AQVKEVFEILDKDQSGFIEEEELKGVLKGFSAHGRDLNDTETKALLAAGDSDHDGKIGADEFAK  104 (109)
T ss_dssp             HHHHHHHHHHCTTCSSEECHHHHHTHHHHHCTTCCCCCHHHHHHHHHHHCTTCSSSEEHHHHHH
T ss_pred             HHHHHHHhhhcCCCCCeEcHHHHHHHHHHhhhccCcCCHHHHHHHHHHhCCCCCCCEeHHHHHH
Confidence            458889999999999999999998877532  222221   11111223456677777776654

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=81.97  E-value=0.27  Score=49.02  Aligned_cols=22  Identities=23%  Similarity=0.507  Sum_probs=20.0

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 006490          424 FRCLLFGPQNAGKSALLNSFLE  445 (643)
Q Consensus       424 ~ki~ivG~~nvGKSSLln~l~~  445 (643)
                      -+|+++|++|||||-|+++|..
T Consensus        50 sNILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          50 KNILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             ccEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999999975