Citrus Sinensis ID: 006505
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 643 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SIT6 | 649 | ABC transporter G family | yes | no | 0.995 | 0.986 | 0.727 | 0.0 | |
| Q9MAH4 | 590 | ABC transporter G family | no | no | 0.880 | 0.959 | 0.467 | 1e-151 | |
| Q3E9B8 | 624 | ABC transporter G family | no | no | 0.853 | 0.879 | 0.439 | 1e-137 | |
| Q9FLX5 | 589 | ABC transporter G family | no | no | 0.835 | 0.911 | 0.437 | 1e-135 | |
| Q9SW08 | 577 | ABC transporter G family | no | no | 0.838 | 0.934 | 0.431 | 1e-134 | |
| Q9M2V7 | 736 | ABC transporter G family | no | no | 0.888 | 0.775 | 0.353 | 1e-109 | |
| Q9M2V5 | 708 | ABC transporter G family | no | no | 0.878 | 0.798 | 0.358 | 1e-109 | |
| O80946 | 740 | ABC transporter G family | no | no | 0.940 | 0.817 | 0.338 | 1e-105 | |
| Q9ZUT0 | 755 | ABC transporter G family | no | no | 0.922 | 0.785 | 0.341 | 1e-104 | |
| Q9FNB5 | 727 | ABC transporter G family | no | no | 0.897 | 0.793 | 0.351 | 1e-104 |
| >sp|Q9SIT6|AB5G_ARATH ABC transporter G family member 5 OS=Arabidopsis thaliana GN=ABCG5 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 952 bits (2461), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 473/650 (72%), Positives = 543/650 (83%), Gaps = 10/650 (1%)
Query: 1 MNKQGGCEIEAIGINYNVYTQK-KETPFKIFTKN---QLNDDHHAQEELSKLEEAADSDG 56
M KQG CEIEA+ I+YN++ +K PF IF + + + +EE KLE+ +
Sbjct: 1 MEKQG-CEIEALDIDYNIFVRKINVNPFGIFRRKPRPEADQPVKTEEESLKLEDET-GNK 58
Query: 57 VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRK 116
V+ VL GV+C+AKPWEILAIVGPSGAGKSSLLEILA +L PQ+GS +VN P+D+A F+K
Sbjct: 59 VKHVLKGVTCRAKPWEILAIVGPSGAGKSSLLEILAARLIPQTGSVYVNKRPVDRANFKK 118
Query: 117 VSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDD 176
+SGYVTQ+DTLFPLLTVEETL+FSAKLRL+LP +LR+RVKSLV ELGLE VA ARVGDD
Sbjct: 119 ISGYVTQKDTLFPLLTVEETLLFSAKLRLKLPADELRSRVKSLVHELGLEAVATARVGDD 178
Query: 177 RVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVIL 236
VRGISGGERRRVSIG +VIHDPKVLILDEPTSGLDSTSAL IIDMLK MAETRGRT+IL
Sbjct: 179 SVRGISGGERRRVSIGVEVIHDPKVLILDEPTSGLDSTSALLIIDMLKHMAETRGRTIIL 238
Query: 237 SIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSVSLRMMGLQLPMHVNVVEFAIESIDL 296
+IHQPGFRIVK FNS+L+LANGS L G+VD L V LR GL P+H N+VEFAIESI+
Sbjct: 239 TIHQPGFRIVKQFNSVLLLANGSTLKQGSVDQLGVYLRSNGLHPPLHENIVEFAIESIES 298
Query: 297 IQEQRKIQQENQPRMMLP--ATQQQKKAEE--GESRSGKFTLQQLFQQSKVIDEEIMNVG 352
I +Q+++Q+ + +L T Q+K++E+ GES+SGKFTLQQLFQQ++V D MN+
Sbjct: 299 ITKQQRLQESRRAAHVLTPQTTLQEKRSEDSQGESKSGKFTLQQLFQQTRVADVGTMNIA 358
Query: 353 IEIPRDFANSRFKETIILTHRFSKNIFRTKELFACRTIQMLISGIVLGSIFHNVKDDLTG 412
E RDFANSR +ET+ILTHRFSKNIFRTKELFACRT+QML SGIVLG IFHN+KDDL G
Sbjct: 359 TEFTRDFANSRLEETMILTHRFSKNIFRTKELFACRTVQMLGSGIVLGLIFHNLKDDLKG 418
Query: 413 TEEKVGLFAFILTFLLSCTTEALPIFLQEREILMKETSCGSYRVSSYAIANGLVYLPFLL 472
E+VGLFAFILTFLL+ T EALPIFLQEREILMKETS GSYRVSSYA+ANGLVYLPFLL
Sbjct: 419 ARERVGLFAFILTFLLTSTIEALPIFLQEREILMKETSSGSYRVSSYAVANGLVYLPFLL 478
Query: 473 ILAILFSVPLYWIVGLNPNLMAFFHFLLLIWLILYTANSVVVCFSALVPNFIVGNSVISG 532
ILAILFS P+YW+VGLNP+ MAF HF LLIWLILYTANSVVVCFSALVPNFIVGNSVISG
Sbjct: 479 ILAILFSTPVYWLVGLNPSFMAFLHFSLLIWLILYTANSVVVCFSALVPNFIVGNSVISG 538
Query: 533 VMGSFFLFSGYFISKHGIPDYWIFMHYISLFKYPFEQFLINEFSDSDKCLQYIFGKCVVK 592
VMGSFFLFSGYFIS H IP YWIFMHYISLFKYPFE FLINEFS S+KCL+Y FGKC+V
Sbjct: 539 VMGSFFLFSGYFISNHEIPGYWIFMHYISLFKYPFEGFLINEFSKSNKCLEYGFGKCLVT 598
Query: 593 GEDVLREAGYEEESSWRNLVIMVGFILIYRFISYVILRFRCSQRSFRRAL 642
ED+L+E Y EES WRN+VIM+ F+L+YRFISYVILR RCSQRSF+ L
Sbjct: 599 EEDLLKEERYGEESRWRNVVIMLCFVLLYRFISYVILRCRCSQRSFKTTL 648
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9MAH4|AB10G_ARATH ABC transporter G family member 10 OS=Arabidopsis thaliana GN=ABCG10 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 536 bits (1382), Expect = e-151, Method: Compositional matrix adjust.
Identities = 289/618 (46%), Positives = 396/618 (64%), Gaps = 52/618 (8%)
Query: 23 KETPFKIFTKNQLNDDHHAQEELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGA 82
+E +++ TKN + S L + +L VSC A+ EI AI GPSGA
Sbjct: 13 REISYRLETKNLSYRIGGNTPKFSNLCGLLSEKEEKVILKDVSCDARSAEITAIAGPSGA 72
Query: 83 GKSSLLEILAGKLT--PQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTVEETLMFS 140
GK++LLEILAGK++ SG VNG P+D ++R+VSG+V Q D LFP LTV+ETL +S
Sbjct: 73 GKTTLLEILAGKVSHGKVSGQVLVNGRPMDGPEYRRVSGFVPQEDALFPFLTVQETLTYS 132
Query: 141 AKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPK 200
A LRL+ + A+VK L++ELGLEHVA +R+G GISGGERRRVSIG +++HDP
Sbjct: 133 ALLRLKTKRKDAAAKVKRLIQELGLEHVADSRIGQGSRSGISGGERRRVSIGVELVHDPN 192
Query: 201 VLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSV 260
V+++DEPTSGLDS SALQ++ +LK M +G+T++L+IHQPGFRI++ + I++L+NG V
Sbjct: 193 VILIDEPTSGLDSASALQVVTLLKDMTIKQGKTIVLTIHQPGFRILEQIDRIVLLSNGMV 252
Query: 261 LHHGTVDLLSVSLRMMGLQLPMHVNVVEFAIESIDLIQEQRKIQQENQPRMMLPATQQQK 320
+ +G+V L ++ G Q+P VNV+E+AI+ ++ R TQ +
Sbjct: 253 VQNGSVYSLHQKIKFSGHQIPRRVNVLEYAIDIAGSLEPIR--------------TQSCR 298
Query: 321 KAEEGESRSGKFTLQQLFQQSKVIDEEIMNVGIEIPRD--FANSRFKETIILTHRFSKNI 378
+ + SK ++ G E+ + +NS +E IL R KNI
Sbjct: 299 EIS-------------CYGHSKTWKSCYISAGGELHQSDSHSNSVLEEVQILGQRSCKNI 345
Query: 379 FRTKELFACRTIQMLISGIVLGSIFHNVKDDLTGTEEKV---GLFAFILTFLLSCTTEAL 435
FRTK+LF R +Q I+G++LGSI+ NV + E KV G FAFILTFLLS TTE L
Sbjct: 346 FRTKQLFTTRALQASIAGLILGSIYLNVGNQ--KKEAKVLRTGFFAFILTFLLSSTTEGL 403
Query: 436 PIFLQEREILMKETSCGSYRVSSYAIANGLVYLPFLLILAILFSVPLYWIVGLNPNLMAF 495
PIFLQ+R ILM+ETS +YRV SY +A+ L+++PFLLI+++LF+ P+YW+VGL L F
Sbjct: 404 PIFLQDRRILMRETSRRAYRVLSYVLADTLIFIPFLLIISMLFATPVYWLVGLRRELDGF 463
Query: 496 FHFLLLIWLILYTANSVVVCFSALVPNFIVGNSVISGVMGSFFLFSGYFISKHGIPDYWI 555
+F L+IW++L +NS V CFSALVPNFI+G SVISG+MGSFFLFSGYFI+K IP YW
Sbjct: 464 LYFSLVIWIVLLMSNSFVACFSALVPNFIMGTSVISGLMGSFFLFSGYFIAKDRIPVYWE 523
Query: 556 FMHYISLFKYPFEQFLINEFSDSDKCLQYIFGKCVVKGEDVLREAGYEEESSWRNLVIMV 615
FMHY+SLFKYPFE +INE+ +G+ L++ +E W NL IM
Sbjct: 524 FMHYLSLFKYPFECLMINEY----------------RGDVFLKQQDLKESQKWSNLGIMA 567
Query: 616 GFILIYRFISYVILRFRC 633
FI+ YR + + IL +RC
Sbjct: 568 SFIVGYRVLGFFILWYRC 585
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3E9B8|AB23G_ARATH ABC transporter G family member 23 OS=Arabidopsis thaliana GN=ABCG23 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 489 bits (1258), Expect = e-137, Method: Compositional matrix adjust.
Identities = 258/587 (43%), Positives = 384/587 (65%), Gaps = 38/587 (6%)
Query: 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGK-----LTPQSGSTFVNGSPIDKAQF 114
+L+ VS A+ +ILA+VGPSG GKS+LL+I++G+ L P S N D Q
Sbjct: 66 ILNSVSLAAESSKILAVVGPSGTGKSTLLKIISGRVNHKALDPSSAVLMNNRKITDYNQL 125
Query: 115 RKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRA-RVKSLVKELGLEHVAMARV 173
R++ G+V Q D L PLLTV+ETLM+SAK LR A+ R RV+SL+ +LGL V + V
Sbjct: 126 RRLCGFVPQDDDLLPLLTVKETLMYSAKFSLRDSTAKEREERVESLLSDLGLVLVQDSFV 185
Query: 174 G--DDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRG 231
G D+ RG+SGGER+RVSI ++I DP +L+LDEPTSGLDS ++LQ++++L MA+++
Sbjct: 186 GEGDEEDRGVSGGERKRVSIAVEMIRDPPILLLDEPTSGLDSRNSLQVVELLATMAKSKQ 245
Query: 232 RTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSVSLRMMGLQLPMHVNVVEFAI 291
RTV+ SIHQP +RI+ + L+L+ GSV+H G+++ L S+ +G Q+P +N +EFA+
Sbjct: 246 RTVLFSIHQPSYRILDYISDYLILSRGSVIHLGSLEHLEDSIAKLGFQIPEQLNPIEFAM 305
Query: 292 ESIDLIQEQRKIQQENQPRMMLPATQQQKKAEEGESRSGKFTLQQLFQQSKVIDEEIMNV 351
E I E + + N + + E G + ++ F +V+D
Sbjct: 306 E----IVESLRTFKPNS----VAVVESSSMWPENNENDGIISKKEAF---RVLD------ 348
Query: 352 GIEIPRDFANSRFKETIILTHRFSKNIFRTKELFACRTIQMLISGIVLGSIFHNVKDDLT 411
E L RF K I+RTK+LF RT+Q +++G+ LGS++ +K D
Sbjct: 349 ------------VTEISYLCSRFCKIIYRTKQLFLARTMQAVVAGLGLGSVYTRLKRDEE 396
Query: 412 GTEEKVGLFAFILTFLLSCTTEALPIFLQEREILMKETSCGSYRVSSYAIANGLVYLPFL 471
G E++GLFAF L+FLLS T EALPI+L+ER +LMKE+S GSYR+SSY IAN + ++PFL
Sbjct: 397 GVAERLGLFAFSLSFLLSSTVEALPIYLRERRVLMKESSRGSYRISSYMIANTIAFVPFL 456
Query: 472 LILAILFSVPLYWIVGLNPNLMAFFHFLLLIWLILYTANSVVVCFSALVPNFIVGNSVIS 531
++++LFS+P+YWIVGLNP++ AF F+L +WLI+ A+S+V+ SA+ P+FI GNS+I
Sbjct: 457 FVVSLLFSIPVYWIVGLNPSIQAFSFFVLCVWLIILMASSLVLFLSAVSPDFISGNSLIC 516
Query: 532 GVMGSFFLFSGYFISKHGIPDYWIFMHYISLFKYPFEQFLINEF-SDSDKCLQYIFGKCV 590
V+G+FFLFSGYFI K IP W+FM+Y+SL++YP E ++NE+ S ++C C+
Sbjct: 517 TVLGAFFLFSGYFIPKEKIPKPWMFMYYVSLYRYPLESMVVNEYWSMREECFSSGNMGCL 576
Query: 591 VKGEDVLREAGYEEESSWRNLVIMVGFILIYRFISYVILRFRCSQRS 637
+ GEDVL+E G ++++ W N+ IM+ F + YR + + IL + S+ +
Sbjct: 577 MTGEDVLKERGLDKDTRWINVGIMLAFFVFYRILCWGILLRKASKST 623
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FLX5|AB8G_ARATH ABC transporter G family member 8 OS=Arabidopsis thaliana GN=ABCG8 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 483 bits (1244), Expect = e-135, Method: Compositional matrix adjust.
Identities = 254/580 (43%), Positives = 375/580 (64%), Gaps = 43/580 (7%)
Query: 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSG 119
+L ++ A P EILA+VGPSGAGKS+LL+ILA K +P SGS +N PI+ + +RK+S
Sbjct: 44 ILRNITLTAHPTEILAVVGPSGAGKSTLLDILASKTSPTSGSILLNSIPINPSSYRKISS 103
Query: 120 YVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVR 179
YV Q D+ FPLLTV ET F+A L L P + V SL+ EL L H++ R+ +
Sbjct: 104 YVPQHDSFFPLLTVSETFSFAACLLLPNPSI-VSETVTSLLSELNLTHLSHTRLA----Q 158
Query: 180 GISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIH 239
G+SGGERRRVSIG ++HDP L+LDEPTSGLDS SA +I +LK +A +R RTVILSIH
Sbjct: 159 GLSGGERRRVSIGLSLLHDPCFLLLDEPTSGLDSKSAFDVIHILKSIAVSRQRTVILSIH 218
Query: 240 QPGFRIVKMFNSILMLANGSVLHHGTVDLLSVSLRMMGLQLPMHVNVVEFAIESIDLIQE 299
QP F+I+ + + +L+L+ G+V++HG +D L L G +P +N +E+A+E ++QE
Sbjct: 219 QPSFKILSIIDRLLLLSKGTVVYHGRLDSLEGFLLFKGFTVPPQLNSLEYAME---ILQE 275
Query: 300 QRKIQQENQPRMMLPATQQQKKAEEGESRSGKFTLQQLFQQSKVIDEEIMNVGIEIPRDF 359
R+ N LP+ + +K+ E +QS V +
Sbjct: 276 LRE-SDGNTDATALPSIENRKQRE---------------KQSIV--------------RY 305
Query: 360 ANSRFKETIILTHRFSKNIFRTKELFACRTIQMLISGIVLGSIFHNVKDDLTGTEEKVGL 419
SR E +L RF K I+RT++L ++ L+ G+VLG+I+ N+ G E++ G+
Sbjct: 306 RKSRITEISLLARRFWKIIYRTRQLLLTNALEALVVGLVLGTIYINIGIGKAGIEKRFGM 365
Query: 420 FAFILTFLLSCTTEALPIFLQEREILMKETSCGSYRVSSYAIANGLVYLPFLLILAILFS 479
FAF LTFLLS TTE LPIF+ ER IL++ETS G YR+SS+ +AN LV+LP+L +++I++S
Sbjct: 366 FAFTLTFLLSSTTETLPIFINERPILLRETSSGIYRLSSHILANTLVFLPYLFVISIIYS 425
Query: 480 VPLYWIVGLNPNLMAFFHFLLLIWLILYTANSVVVCFSALVPNFIVGNSVISGVMGSFFL 539
V +Y+++GL P AF +F+L+IW+IL ANS V+ S+L PN+I G S+++ ++ +FFL
Sbjct: 426 VSVYFLIGLCPTWQAFGYFVLVIWIILLMANSFVLFLSSLAPNYITGTSLVTILLAAFFL 485
Query: 540 FSGYFISKHGIPDYWIFMHYISLFKYPFEQFLINEFSD-SDKCLQYI----FGKCVVKGE 594
FSGYFISK +P YW+FM++ S++KY + LINE+S + KCL ++ C+V G
Sbjct: 486 FSGYFISKESLPKYWLFMYFFSMYKYALDALLINEYSCLASKCLVWLEEAQTKICMVTGG 545
Query: 595 DVLREAGYEEESSWRNLVIMVGFILIYRFISYVILRFRCS 634
DVL++ G E+ W N+ +++GF ++YR + ++ L R S
Sbjct: 546 DVLKKKGLHEKQRWFNVYVLLGFFVLYRVLCFLALLRRVS 585
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SW08|AB4G_ARATH ABC transporter G family member 4 OS=Arabidopsis thaliana GN=ABCG4 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 480 bits (1235), Expect = e-134, Method: Compositional matrix adjust.
Identities = 250/580 (43%), Positives = 374/580 (64%), Gaps = 41/580 (7%)
Query: 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSG 119
+L ++ + P +ILAI+GPSGAGKS+LL+ILA + +P SGS +N I+ + +RK+S
Sbjct: 30 ILRNITLTSHPSQILAIIGPSGAGKSTLLDILAARTSPTSGSILLNSVLINPSSYRKISS 89
Query: 120 YVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVR 179
YV Q DT FPLLTV ET FSA L L +++ + V SL+KEL L H+A R+G +
Sbjct: 90 YVPQHDTFFPLLTVSETFTFSASLLLPKNLSKVSSVVASLLKELNLTHLAHTRLG----Q 145
Query: 180 GISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIH 239
G+SGGERRRVSIG ++HDP+VL+LDEPTSGLDS SA ++ +LK +A +R R VILSIH
Sbjct: 146 GLSGGERRRVSIGLSLLHDPEVLLLDEPTSGLDSKSAFDVVQILKSIATSRERIVILSIH 205
Query: 240 QPGFRIVKMFNSILMLANGSVLHHGTVDLLSVSLRMMGLQLPMHVNVVEFAIESIDLIQE 299
QP F+I+ + + +L+L+ G++++HG +DLL L G +P +N +E+A+E + I++
Sbjct: 206 QPSFKILSLIDRVLLLSKGTIVYHGRLDLLEAFLLSKGFTVPSQLNSLEYAMEILQNIRD 265
Query: 300 QRKIQQENQPRMMLPATQQQKKAEEGESRSGKFTLQQLFQQSKVIDEEIMNVGIEIPRDF 359
EN + + KK + +S I R +
Sbjct: 266 ----PYENANIALPDHCPESKKQNQKQS---------------------------IVR-Y 293
Query: 360 ANSRFKETIILTHRFSKNIFRTKELFACRTIQMLISGIVLGSIFHNVKDDLTGTEEKVGL 419
+SR E +L+ RF K I+RT++L ++ L+ G+VLG+I+ N+ G ++ GL
Sbjct: 294 KSSRITEISLLSSRFWKIIYRTRQLLLTNILESLVVGLVLGTIYLNIGTGKEGIRKRFGL 353
Query: 420 FAFILTFLLSCTTEALPIFLQEREILMKETSCGSYRVSSYAIANGLVYLPFLLILAILFS 479
FAF LTFLLS TT+ LPIF+ ER IL++ETS G YR+SS+ +AN LV+LP+LL++AI++S
Sbjct: 354 FAFTLTFLLSSTTQTLPIFIDERPILLRETSSGLYRLSSHILANTLVFLPYLLLIAIIYS 413
Query: 480 VPLYWIVGLNPNLMAFFHFLLLIWLILYTANSVVVCFSALVPNFIVGNSVISGVMGSFFL 539
V LY++VGL + A +F+L+IW+I+ ANS V+ S+L PN+I G S ++ ++ +FFL
Sbjct: 414 VSLYFLVGLCFSWQALAYFVLVIWIIVLMANSFVLFLSSLAPNYIAGTSSVTILLAAFFL 473
Query: 540 FSGYFISKHGIPDYWIFMHYISLFKYPFEQFLINEFSD-SDKCLQYI----FGKCVVKGE 594
FSGYFISK +P YW+FM++ S++KY + LINE+S +KCL + C+V G
Sbjct: 474 FSGYFISKESLPKYWLFMYFFSMYKYALDALLINEYSCLHNKCLVWFEEASVNSCLVTGG 533
Query: 595 DVLREAGYEEESSWRNLVIMVGFILIYRFISYVILRFRCS 634
DVL + G E W N+ +++GF ++YR + +++L R S
Sbjct: 534 DVLDKNGLHERQRWFNVYMLLGFFVLYRVLCFLVLLKRVS 573
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M2V7|AB16G_ARATH ABC transporter G family member 16 OS=Arabidopsis thaliana GN=ABCG16 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 397 bits (1019), Expect = e-109, Method: Compositional matrix adjust.
Identities = 221/626 (35%), Positives = 351/626 (56%), Gaps = 55/626 (8%)
Query: 57 VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQS--GSTFVNGSPIDKAQF 114
+ +LD +S + + EILA++G SG+GKS+L++ LA ++ S G+ +NG +
Sbjct: 104 TKTLLDNISGETRDGEILAVLGASGSGKSTLIDALANRIAKGSLKGTVTLNGEALQSRML 163
Query: 115 RKVSGYVTQRDTLFPLLTVEETLMFSAKLRL--RLPQAQLRARVKSLVKELGLEHVAMAR 172
+ +S YV Q D LFP+LTVEETLMF+A+ RL LP+++ + RV++L+ +LG+ + A
Sbjct: 164 KVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSLPKSKKKLRVQALIDQLGIRNAAKTI 223
Query: 173 VGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGR 232
+GD+ RGISGGERRRVSIG D+IHDP VL LDEPTSGLDSTSA ++ +LK +AE+ G
Sbjct: 224 IGDEGHRGISGGERRRVSIGIDIIHDPIVLFLDEPTSGLDSTSAFMVVKVLKRIAES-GS 282
Query: 233 TVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSVSLRMMGLQLPMHVNVVEFAIE 292
+I+SIHQP R++ + + ++ L+ G + G+ L G +P + N EFA++
Sbjct: 283 IIIMSIHQPSHRVLSLLDRLIFLSRGHTVFSGSPASLPSFFAGFGNPIPENENQTEFALD 342
Query: 293 SI-----------DLIQEQRKIQQ---ENQPRMMLPATQQQKKAEEGESRSGKFTLQQLF 338
I L++ +K Q+ ++ P+ + P E+ S + +L
Sbjct: 343 LIRELEGSAGGTRGLVEFNKKWQEMKKQSNPQTLTPPASPNPNLTLKEAISASISRGKLV 402
Query: 339 QQSKVIDEEIMNVG--IEIPRDFANSRFKETIILTHRFSKNIFRTKELFACRTIQMLISG 396
I + G + +P FAN + E LT R N R EL R ++++G
Sbjct: 403 SGGGGGSSVINHGGGTLAVPA-FANPFWIEIKTLTRRSILNSRRQPELLGMRLATVIVTG 461
Query: 397 IVLGSIFHNVKDDLTGTEEKVGLFAFILTFLLSCTTEALPIFLQEREILMKETSCGSYRV 456
+L ++F + + G +E++G FAF ++ + +ALP+FLQER I M+ET+ +YR
Sbjct: 462 FILATVFWRLDNSPKGVQERLGFFAFAMSTMFYTCADALPVFLQERYIFMRETAYNAYRR 521
Query: 457 SSYAIANGLVYLPFLLILAILFSVPLYWIVGLNPNLMAFFHFLLLIWLILYTANSVVVCF 516
SSY +++ +V P L+ L++ F+V +W VGL LM F + L+I ++ +S V
Sbjct: 522 SSYVLSHAIVTFPSLIFLSLAFAVTTFWAVGLEGGLMGFLFYCLIILASFWSGSSFVTFL 581
Query: 517 SALVPNFIVGNSVISGVMGSFFLFSGYFISKHGIPDYWIFMHYISLFKYPFEQFLINEFS 576
S +VP+ ++G +++ ++ F LFSG+FI++ IP YWI+ HY+SL KYP+E L NEFS
Sbjct: 582 SGVVPHVMLGYTIVVAILAYFLLFSGFFINRDRIPQYWIWFHYLSLVKYPYEAVLQNEFS 641
Query: 577 DSDKCL-------------QYIFG--------------------KCVVKGEDVLREAGYE 603
D +C + +G C+ G DVL++ G
Sbjct: 642 DPTECFVRGVQLFDNSPLGELTYGMKLRLLDSVSRSIGMRISSSTCLTTGADVLKQQGVT 701
Query: 604 EESSWRNLVIMVGFILIYRFISYVIL 629
+ S W L+I VGF ++R + Y+ L
Sbjct: 702 QLSKWNCLLITVGFGFLFRILFYLCL 727
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M2V5|AB18G_ARATH ABC transporter G family member 18 OS=Arabidopsis thaliana GN=ABCG18 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 396 bits (1017), Expect = e-109, Method: Compositional matrix adjust.
Identities = 224/624 (35%), Positives = 359/624 (57%), Gaps = 59/624 (9%)
Query: 57 VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQS--GSTFVNGSPIDKAQF 114
V+ +LD ++ +A+ EILA++G SGAGKS+L++ LAG++ S G+ +NG + +++
Sbjct: 88 VKTLLDDITGEARDGEILAVLGGSGAGKSTLIDALAGRVAEDSLKGTVTLNGEKVLQSRL 147
Query: 115 RKV-SGYVTQRDTLFPLLTVEETLMFSAKLRL--RLPQAQLRARVKSLVKELGLEHVAMA 171
KV S YV Q D LFP+LTV+ETLMF+++ RL LP+++ RV++L+ +LGL + A
Sbjct: 148 LKVISAYVMQDDLLFPMLTVKETLMFASEFRLPRSLPKSKKMERVETLIDQLGLRNAADT 207
Query: 172 RVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRG 231
+GD+ RG+SGGERRRVSIG D+IHDP +L LDEPTSGLDST+A ++ +LK +A++ G
Sbjct: 208 VIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTNAFMVVQVLKRIAQS-G 266
Query: 232 RTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSVSLRMMGLQLPMHVNVVEFAI 291
VI+SIHQP RI+ + + +++L++G + +G+ L G +P N+ EFA+
Sbjct: 267 SVVIMSIHQPSARIIGLLDRLIILSHGKSVFNGSPVSLPSFFSSFGRPIPEKENITEFAL 326
Query: 292 ESI-----------DLIQEQRKIQQENQPRMMLPATQQQKKAEEGESRSGKFTLQQLFQQ 340
+ I DL++ K QQ R AT Q + + + E+ + + +L
Sbjct: 327 DVIRELEGSSEGTRDLVEFNEKWQQNQTAR----ATTQSRVSLK-EAIAASVSRGKLVSG 381
Query: 341 SKVIDEEIMNVGIEIPRDFANSRFKETIILTHRFSKNIFRTKELFACRTIQMLISGIVLG 400
S + + +E +AN ET IL R+ KN RT EL R ++++G++L
Sbjct: 382 SSGANP----ISMETVSSYANPPLAETFILAKRYIKNWIRTPELIGMRIGTVMVTGLLLA 437
Query: 401 SIFHNVKDDLTGTEEKVGLFAFILTFLLSCTTEALPIFLQEREILMKETSCGSYRVSSYA 460
+++ + + G +E++G FAF ++ + C + +P+F+QER I ++ET+ +YR SSY
Sbjct: 438 TVYWRLDNTPRGAQERMGFFAFGMSTMFYCCADNIPVFIQERYIFLRETTHNAYRTSSYV 497
Query: 461 IANGLVYLPFLLILAILFSVPLYWIVGLNPNLMAFFHFLLLIWLILYTANSVVVCFSALV 520
I++ LV LP LL L+I F+ +W VGL+ L +FF++ L+I+ ++ +S+V S L+
Sbjct: 498 ISHALVSLPQLLALSIAFAATTFWTVGLSGGLESFFYYCLIIYAAFWSGSSIVTFISGLI 557
Query: 521 PNFIVGNSVISGVMGSFFLFSGYFISKHGIPDYWIFMHYISLFKYPFEQFLINEFSDSDK 580
PN ++ V + L G++I++ IP YWI+ HYISL KYP+E LINEF D +
Sbjct: 558 PNVMMSYMVTIAYLSYCLLLGGFYINRDRIPLYWIWFHYISLLKYPYEAVLINEFDDPSR 617
Query: 581 C------------------------LQYIFGK---------CVVKGEDVLREAGYEEESS 607
C L + G C+ G D+L + G + S
Sbjct: 618 CFVKGVQVFDGTLLAEVSHVMKVKLLDTLSGSLGTKITESTCLRTGPDLLMQQGITQLSK 677
Query: 608 WRNLVIMVGFILIYRFISYVILRF 631
W L I + + L +R + Y+ L F
Sbjct: 678 WDCLWITLAWGLFFRILFYLSLLF 701
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O80946|AB1G_ARATH ABC transporter G family member 1 OS=Arabidopsis thaliana GN=ABCG1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 383 bits (984), Expect = e-105, Method: Compositional matrix adjust.
Identities = 227/671 (33%), Positives = 361/671 (53%), Gaps = 66/671 (9%)
Query: 14 INYNVYTQKKETPFKIFTKNQLNDDHHAQEELSKLEEAADSDGVRRVLDGVSCKAKPWEI 73
+ YNV + K +F + + D AQ K + +L+ +S + + EI
Sbjct: 72 LTYNVSVRPKLDFRNLFPRRRTEDPEIAQTARPK---------TKTLLNNISGETRDGEI 122
Query: 74 LAIVGPSGAGKSSLLEILAGKLTPQS--GSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLL 131
+A++G SG+GKS+L++ LA ++ S G+ +NG + + +S YV Q D LFP+L
Sbjct: 123 MAVLGASGSGKSTLIDALANRIAKGSLKGTVKLNGETLQSRMLKVISAYVMQDDLLFPML 182
Query: 132 TVEETLMFSAKLRL--RLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRV 189
TVEETLMF+A+ RL LP+++ + RV++L+ +LG+ + A +GD+ RGISGGERRRV
Sbjct: 183 TVEETLMFAAEFRLPRSLPKSKKKLRVQALIDQLGIRNAAKTIIGDEGHRGISGGERRRV 242
Query: 190 SIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMF 249
SIG D+IHDP +L LDEPTSGLDSTSA ++ +LK +A++ G VI+SIHQP R++ +
Sbjct: 243 SIGIDIIHDPILLFLDEPTSGLDSTSAFMVVKVLKRIAQS-GSIVIMSIHQPSHRVLGLL 301
Query: 250 NSILMLANGSVLHHGTVDLLSVSLRMMGLQLPMHVNVVEFAIESI-----------DLIQ 298
+ ++ L+ G ++ G+ L G +P + N EFA++ I LI+
Sbjct: 302 DRLIFLSRGHTVYSGSPASLPRFFTEFGSPIPENENRTEFALDLIRELEGSAGGTRGLIE 361
Query: 299 EQRKIQ----QENQPRMMLPATQQQKKAEEGESRSGKFTLQQLFQQSKVIDE---EIMNV 351
+K Q Q N+ + P + E+ + + +L + +
Sbjct: 362 FNKKWQEMKKQSNRQPPLTPPSSPYPNLTLKEAIAASISRGKLVSGGESVAHGGATTNTT 421
Query: 352 GIEIPRDFANSRFKETIILTHRFSKNIFRTKELFACRTIQMLISGIVLGSIFHNVKDDLT 411
+ +P FAN + E L+ R N R ELF R ++I+G +L ++F + +
Sbjct: 422 TLAVPA-FANPMWIEIKTLSKRSMLNSRRQPELFGIRIASVVITGFILATVFWRLDNSPK 480
Query: 412 GTEEKVGLFAFILTFLLSCTTEALPIFLQEREILMKETSCGSYRVSSYAIANGLVYLPFL 471
G +E++G FAF ++ + +ALP+FLQER I M+ET+ +YR SSY +++ +V P L
Sbjct: 481 GVQERLGFFAFAMSTMFYTCADALPVFLQERYIFMRETAYNAYRRSSYVLSHAIVSFPSL 540
Query: 472 LILAILFSVPLYWIVGLNPNLMAFFHFLLLIWLILYTANSVVVCFSALVPNFIVGNSVIS 531
+ L++ F+ YW VGL+ L + L+I ++ +S V S +VP+ ++G +++
Sbjct: 541 IFLSVAFAATTYWAVGLDGGLTGLLFYCLIILASFWSGSSFVTFLSGVVPSVMLGYTIVV 600
Query: 532 GVMGSFFLFSGYFISKHGIPDYWIFMHYISLFKYPFEQFLINEFSDSDKCL---QYIFGK 588
++ F LFSG+FI+++ IPDYWI+ HY+SL KYP+E L NEFSD+ KC IF
Sbjct: 601 AILAYFLLFSGFFINRNRIPDYWIWFHYMSLVKYPYEAVLQNEFSDATKCFVRGVQIFDN 660
Query: 589 ------------------------------CVVKGEDVLREAGYEEESSWRNLVIMVGFI 618
C+ G D+LR+ G + S W L I V F
Sbjct: 661 TPLGELPEVMKLKLLGTVSKSLGVTISSTTCLTTGSDILRQQGVVQLSKWNCLFITVAFG 720
Query: 619 LIYRFISYVIL 629
+R + Y L
Sbjct: 721 FFFRILFYFTL 731
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZUT0|AB2G_ARATH ABC transporter G family member 2 OS=Arabidopsis thaliana GN=ABCG2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 380 bits (977), Expect = e-104, Method: Compositional matrix adjust.
Identities = 228/667 (34%), Positives = 361/667 (54%), Gaps = 74/667 (11%)
Query: 14 INYNVYTQKKETPFKIFTKNQLNDDHHAQEELSKLEEAADSDGVRRVLDGVSCKAKPWEI 73
+ Y+V QKK P ++ ND S + +L+G+S +A+ E+
Sbjct: 103 LTYSVKIQKKFNPLACCRRSG-NDS---------------SVNTKILLNGISGEAREGEM 146
Query: 74 LAIVGPSGAGKSSLLEILAGKLTPQS--GSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLL 131
+A++G SG+GKS+L++ LA ++ S GS +NG ++ + + +S YV Q D LFP+L
Sbjct: 147 MAVLGASGSGKSTLIDALANRIAKDSLRGSITLNGEVLESSMQKVISAYVMQDDLLFPML 206
Query: 132 TVEETLMFSAKLRL--RLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRV 189
TVEETLMFSA+ RL L + + +ARV++L+ +LGL A +GD+ RG+SGGERRRV
Sbjct: 207 TVEETLMFSAEFRLPRSLSKKKKKARVQALIDQLGLRSAAKTVIGDEGHRGVSGGERRRV 266
Query: 190 SIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMF 249
SIG D+IHDP +L LDEPTSGLDSTSA +I +L+ +A++ G VI+SIHQP +RI+ +
Sbjct: 267 SIGNDIIHDPIILFLDEPTSGLDSTSAYMVIKVLQRIAQS-GSIVIMSIHQPSYRIMGLL 325
Query: 250 NSILMLANGSVLHHGTVDLLSVSLRMMGLQLPMHVNVVEFAIESIDLIQEQRKIQQENQP 309
+ ++ L+ G+ ++ G+ L +P + N EFA+ DLI+E + +P
Sbjct: 326 DQLIFLSKGNTVYSGSPTHLPQFFSEFKHPIPENENKTEFAL---DLIRELEYSTEGTKP 382
Query: 310 RMMLPATQQQKKAEEGES-----------RSGKFTLQQLFQQSKVIDEEIMNVGIEIP-- 356
L +Q +A++ S S K + + K++ N +
Sbjct: 383 ---LVEFHKQWRAKQAPSYNNNNKRNTNVSSLKEAITASISRGKLVSGATNNNSSNLTPS 439
Query: 357 -RDFANSRFKETIILTHRFSKNIFRTKELFACRTIQMLISGIVLGSIFHNVKDDLTGTEE 415
+ FAN + E I++ R N R EL R ++++GI+L ++F N+ + G +E
Sbjct: 440 FQTFANPFWIEMIVIGKRAILNSRRQPELLGMRLGAVMVTGIILATMFTNLDNSPKGAQE 499
Query: 416 KVGLFAFILTFLLSCTTEALPIFLQEREILMKETSCGSYRVSSYAIANGLVYLPFLLILA 475
++G FAF ++ EA+P+FLQER I M+ET+ +YR SSY ++ ++ +P L++L+
Sbjct: 500 RLGFFAFAMSTTFYTCAEAIPVFLQERYIFMRETAYNAYRRSSYVLSQSIISIPALIVLS 559
Query: 476 ILFSVPLYWIVGLNPNLMAFFHFLLLIWLILYTANSVVVCFSALVPNFIVGNSVISGVMG 535
F+ +W VGL+ FF F I + +S V S ++PN ++G +V+ ++
Sbjct: 560 ASFAATTFWAVGLDGGANGFFFFYFTILASFWAGSSFVTFLSGVIPNVMLGFTVVVAILA 619
Query: 536 SFFLFSGYFISKHGIPDYWIFMHYISLFKYPFEQFLINEFSDSDKC-------------- 581
F LFSG+FIS+ IP YW++ HYISL KYP+E L NEF + +C
Sbjct: 620 YFLLFSGFFISRDRIPVYWLWFHYISLVKYPYEGVLQNEFQNPTRCFARGVQLFDNSPLG 679
Query: 582 ----------LQYIFG---------KCVVKGEDVLREAGYEEESSWRNLVIMVGFILIYR 622
L+ + G CV G D+L++ G + S W L I V + +R
Sbjct: 680 EFPNDVKVNLLKSMSGVLGTNVTAETCVTTGIDILKQQGITDISKWNCLWITVAWGFFFR 739
Query: 623 FISYVIL 629
+ Y L
Sbjct: 740 VLFYFTL 746
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FNB5|AB6G_ARATH ABC transporter G family member 6 OS=Arabidopsis thaliana GN=ABCG6 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 380 bits (975), Expect = e-104, Method: Compositional matrix adjust.
Identities = 222/631 (35%), Positives = 353/631 (55%), Gaps = 54/631 (8%)
Query: 49 EEAADSDGV-----RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQS--GS 101
+ A S+G+ + +L+G++ +A+ EILA++G SG+GKS+L++ LA ++ S G+
Sbjct: 92 DPGAPSEGIFSSKTKTLLNGITGEARDGEILAVLGASGSGKSTLIDALANRIAKGSLKGN 151
Query: 102 TFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRL--RLPQAQLRARVKSL 159
+NG ++ + +S YV Q D LFP+LTVEETLMF+A+ RL L +++ RV++L
Sbjct: 152 VTLNGEVLNSKMQKAISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSLSKSKKSLRVQAL 211
Query: 160 VKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQI 219
+ +LGL + A +GD+ RGISGGERRRVSIG D+IHDP +L LDEPTSGLDSTSAL +
Sbjct: 212 IDQLGLRNAANTVIGDEGHRGISGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSALSV 271
Query: 220 IDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSVSLRMMGLQ 279
I +LK +A++ G VI+++HQP +R++++ + +L L+ G + G+ +L G
Sbjct: 272 IKVLKRIAQS-GSMVIMTLHQPSYRLLRLLDRLLFLSRGQTVFSGSPAMLPRFFAEFGHP 330
Query: 280 LPMHVNVVEFAIESIDLIQEQRKIQQENQPRMMLPATQQQKKAEE--------GESRSGK 331
+P H N EFA+ DLI+E + + +Q+KAE E+ S
Sbjct: 331 IPEHENRTEFAL---DLIRELEGSAGGTRSLVEFNKGFRQRKAEPRSQTGLSLKEAISAS 387
Query: 332 FTLQQLFQQSKVIDEEIMNVGIEIPRDFANSRFKETIILTHRFSKNIFRTKELFACRTIQ 391
+ +L + + + FAN + E +L R N R ELF R
Sbjct: 388 ISKGKLVSGATTTTHSSGSSPVSTIPTFANPFWVELAVLAKRSMTNSRRQPELFGIRLGA 447
Query: 392 MLISGIVLGSIFHNVKDDLTGTEEKVGLFAFILTFLLSCTTEALPIFLQEREILMKETSC 451
+L++G +L ++F + + G +E++G FAF ++ +ALP+FLQER I M+ET+
Sbjct: 448 VLVTGFILATMFWQLDNSPKGVQERLGCFAFAMSTTFYTCADALPVFLQERFIFMRETAY 507
Query: 452 GSYRVSSYAIANGLVYLPFLLILAILFSVPLYWIVGLNPNLMAFFHFLLLIWLILYTANS 511
+YR SSY +++ LV LP L+IL++ F+ +W VGL+ LM F + L+I + +S
Sbjct: 508 NAYRRSSYVLSHSLVALPSLIILSLAFAAITFWGVGLDGGLMGFLFYFLVILASFWAGSS 567
Query: 512 VVVCFSALVPNFIVGNSVISGVMGSFFLFSGYFISKHGIPDYWIFMHYISLFKYPFEQFL 571
V S +VP+ ++G +++ ++ F LFSG+FI++ IP YWI+ HYISL KYP+E L
Sbjct: 568 FVTFLSGVVPHVMLGYTIVVAILAYFLLFSGFFINRDRIPGYWIWFHYISLVKYPYEAVL 627
Query: 572 INEFSDSDKC---------------------------------LQYIFGKCVVKGEDVLR 598
+NEF D KC ++ C+ G D+L+
Sbjct: 628 LNEFGDPTKCFVRGVQIFDNTPLVAVPQGMKVRLLATMSKSLGMRITSSTCLTTGYDILQ 687
Query: 599 EAGYEEESSWRNLVIMVGFILIYRFISYVIL 629
+ G + + W L + V + +R + Y L
Sbjct: 688 QQGVTDLTKWNCLWVTVAWGFFFRILFYFSL 718
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 643 | ||||||
| 224080986 | 643 | white-brown-complex ABC transporter fami | 0.975 | 0.975 | 0.807 | 0.0 | |
| 357519991 | 641 | ABC transporter G family member [Medicag | 0.979 | 0.982 | 0.756 | 0.0 | |
| 255550508 | 600 | ATP-binding cassette transporter, putati | 0.923 | 0.99 | 0.782 | 0.0 | |
| 356512848 | 649 | PREDICTED: ABC transporter G family memb | 0.989 | 0.979 | 0.753 | 0.0 | |
| 225438375 | 635 | PREDICTED: ABC transporter G family memb | 0.976 | 0.988 | 0.755 | 0.0 | |
| 356507458 | 640 | PREDICTED: ABC transporter G family memb | 0.973 | 0.978 | 0.743 | 0.0 | |
| 15225446 | 649 | ABC transporter G family member 5 [Arabi | 0.995 | 0.986 | 0.727 | 0.0 | |
| 297836004 | 649 | abc transporter family protein [Arabidop | 0.995 | 0.986 | 0.727 | 0.0 | |
| 356518775 | 690 | PREDICTED: ABC transporter G family memb | 0.947 | 0.882 | 0.731 | 0.0 | |
| 224093444 | 546 | white-brown-complex ABC transporter fami | 0.844 | 0.994 | 0.792 | 0.0 |
| >gi|224080986|ref|XP_002306254.1| white-brown-complex ABC transporter family [Populus trichocarpa] gi|222855703|gb|EEE93250.1| white-brown-complex ABC transporter family [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1055 bits (2729), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 512/634 (80%), Positives = 574/634 (90%), Gaps = 7/634 (1%)
Query: 3 KQGGCEIEAIGINYNVYTQKKETPFKIFTKNQLNDDHHAQEELSKLEEAADSDGVRRVLD 62
K+ GCEIEAIGI+Y + T+K+E PFKIFTK Q + + ++++ LEEA S G + VL
Sbjct: 2 KKQGCEIEAIGISYKISTKKREHPFKIFTKKQ--EINEEPKQVTDLEEA--SLGAKHVLK 57
Query: 63 GVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVT 122
V CKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQ+G+ FVN +PIDKA+F+K+SGYVT
Sbjct: 58 DVFCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQNGTIFVNQNPIDKARFKKISGYVT 117
Query: 123 QRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGIS 182
Q+DTLFPLLTVEETLMFSAKLRLRLPQAQL + VKSL+KELGL+HVAM RVGDDR+RGIS
Sbjct: 118 QKDTLFPLLTVEETLMFSAKLRLRLPQAQLSSNVKSLMKELGLDHVAMTRVGDDRIRGIS 177
Query: 183 GGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPG 242
GGERRRVSIG D IHDP+VLILDEPTSGLDSTSALQIIDMLKVMAETRGRT+ILSIHQPG
Sbjct: 178 GGERRRVSIGVDAIHDPEVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTIILSIHQPG 237
Query: 243 FRIVKMFNSILMLANGSVLHHGTVDLLSVSLRMMGLQLPMHVNVVEFAIESIDLIQEQRK 302
FRIVK+FNSILM+ANGSVLHHGTVD L V+LR MG+QLP+HVNVVEFA+ESI+ IQ+QRK
Sbjct: 238 FRIVKLFNSILMMANGSVLHHGTVDQLGVNLRTMGMQLPIHVNVVEFALESIETIQQQRK 297
Query: 303 I-QQENQPRMMLPATQQ--QKKAEEGESRSGKFTLQQLFQQSKVIDEEIMNVGIEIPRDF 359
+ QQE QP+++ +T + QKK E GESRSGKFTLQQLFQQSKV+DEEI+NV + P F
Sbjct: 298 VLQQETQPQLLSSSTTKSRQKKVEVGESRSGKFTLQQLFQQSKVVDEEIINVEFDFPLGF 357
Query: 360 ANSRFKETIILTHRFSKNIFRTKELFACRTIQMLISGIVLGSIFHNVKDDLTGTEEKVGL 419
ANSR +ET+ILTHRFSKNIFRTKELFACRTIQMLISG+VLGSIF+N++DDL G EE+VGL
Sbjct: 358 ANSRLQETLILTHRFSKNIFRTKELFACRTIQMLISGLVLGSIFYNLEDDLIGAEERVGL 417
Query: 420 FAFILTFLLSCTTEALPIFLQEREILMKETSCGSYRVSSYAIANGLVYLPFLLILAILFS 479
FAFILTFLLSCTTEALPIFLQEREILMKETSCGSYRVSSYAIANGLVYLPFLLILAILF+
Sbjct: 418 FAFILTFLLSCTTEALPIFLQEREILMKETSCGSYRVSSYAIANGLVYLPFLLILAILFT 477
Query: 480 VPLYWIVGLNPNLMAFFHFLLLIWLILYTANSVVVCFSALVPNFIVGNSVISGVMGSFFL 539
+PLYW+VGLNPN +AF HFLLLIWLILYTANSVVVCFSALVPNFIVGNSVISGVMGSFFL
Sbjct: 478 IPLYWLVGLNPNFIAFMHFLLLIWLILYTANSVVVCFSALVPNFIVGNSVISGVMGSFFL 537
Query: 540 FSGYFISKHGIPDYWIFMHYISLFKYPFEQFLINEFSDSDKCLQYIFGKCVVKGEDVLRE 599
FSGYF SKHGIP+YWIFMHYISLFKYPFE FLINEFS+S KCL+Y+FGKC+V ED+LRE
Sbjct: 538 FSGYFTSKHGIPNYWIFMHYISLFKYPFEGFLINEFSNSGKCLEYMFGKCMVNAEDLLRE 597
Query: 600 AGYEEESSWRNLVIMVGFILIYRFISYVILRFRC 633
GY E+ WRN+VIMV FIL+YRFISYVILRFRC
Sbjct: 598 EGYREDEKWRNVVIMVCFILLYRFISYVILRFRC 631
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357519991|ref|XP_003630284.1| ABC transporter G family member [Medicago truncatula] gi|355524306|gb|AET04760.1| ABC transporter G family member [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 985 bits (2546), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 488/645 (75%), Positives = 557/645 (86%), Gaps = 15/645 (2%)
Query: 3 KQGGCEIEAIGINYNVYTQKKETPFKIFTKNQ--LNDDHHAQEELSKLEEAADSDGVRRV 60
K GCE+E IGINY ++T K E PFKIF+K+ +N + EE+ K GVR V
Sbjct: 2 KMQGCEVEVIGINYKIHTNKAEHPFKIFSKSPQLVNTNVQETEEVEK-----GCSGVRHV 56
Query: 61 LDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGY 120
L VS +A+PWEILAIVGPSGAGKSSLLEILAGK PQ GS +N P+DK+QFRK+SGY
Sbjct: 57 LKNVSFQARPWEILAIVGPSGAGKSSLLEILAGKHRPQKGSVLLNQKPVDKSQFRKLSGY 116
Query: 121 VTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRG 180
VTQ+DTLFPLLTVEET+MFSAKLRL+LPQ Q +RVKSL+KELGL+HVA R+GDDRVRG
Sbjct: 117 VTQKDTLFPLLTVEETMMFSAKLRLKLPQQQQCSRVKSLIKELGLDHVAGTRIGDDRVRG 176
Query: 181 ISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQ 240
ISGGERRRVSIG +VIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRT+ILSIHQ
Sbjct: 177 ISGGERRRVSIGVEVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTIILSIHQ 236
Query: 241 PGFRIVKMFNSILMLANGSVLHHGTVDLLSVSLRMMGLQLPMHVNVVEFAIESIDLIQEQ 300
PGFRIVK+FNS+L+LANGSVLHHGT DLLSV+LR+MGL+LP+HVNVVEFAI+SID+IQ+Q
Sbjct: 237 PGFRIVKLFNSLLLLANGSVLHHGTADLLSVNLRLMGLELPLHVNVVEFAIDSIDVIQQQ 296
Query: 301 RKIQQENQPRMMLPATQQQKKA----EEGESRSGKFTLQQLFQQSKVIDEEIMN---VGI 353
++ Q E + L T QQKK ++G+ +SGKFTLQQLFQQSKVIDE+I+N G+
Sbjct: 297 QQWQVETETPRRLQGTTQQKKGRDDEQQGDDKSGKFTLQQLFQQSKVIDEDIINKTGTGM 356
Query: 354 EIPRDFANSRFKETIILTHRFSKNIFRTKELFACRTIQMLISGIVLGSIFHNVKDDLTGT 413
+ DFANSR +ET+ILTHRFSKNIFRTKELFACRTIQMLISG+VLGSIF N+KDDL GT
Sbjct: 357 DFSYDFANSRLRETMILTHRFSKNIFRTKELFACRTIQMLISGLVLGSIFCNLKDDLRGT 416
Query: 414 EEKVGLFAFILTFLLSCTTEALPIFLQEREILMKETSCGSYRVSSYAIANGLVYLPFLLI 473
+E+VGLFAFILTFLLS + EALPIFLQEREILMKETSCGSYRVSSYAIANGLVYLPFLLI
Sbjct: 417 QERVGLFAFILTFLLSSSIEALPIFLQEREILMKETSCGSYRVSSYAIANGLVYLPFLLI 476
Query: 474 LAILFSVPLYWIVGLNPNLMAFFHFLLLIWLILYTANSVVVCFSALVPNFIVGNSVISGV 533
LAILF+VPLYW+VGLN N AF HFLLLIWL+LYTANSVVVCFSALVPNFIVGNSVI+GV
Sbjct: 477 LAILFTVPLYWLVGLNTNFTAFLHFLLLIWLVLYTANSVVVCFSALVPNFIVGNSVINGV 536
Query: 534 MGSFFLFSGYFISKHGIPDYWIFMHYISLFKYPFEQFLINEFSDSDKCLQYIFGKCVVKG 593
+GSFFLFSGYFIS H IP YWIFMHYISLFKYPFE FLINEFS+S KCL+Y+FG CV+KG
Sbjct: 537 IGSFFLFSGYFISNHEIPSYWIFMHYISLFKYPFEGFLINEFSNSKKCLEYMFGACVMKG 596
Query: 594 EDVLREAGYEEESS-WRNLVIMVGFILIYRFISYVILRFRCSQRS 637
EDVL+E GY E S W+N+ + V FI++YRFISYVILR++CS+RS
Sbjct: 597 EDVLKEEGYGGEGSRWKNVGVTVCFIMVYRFISYVILRYKCSERS 641
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255550508|ref|XP_002516304.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223544534|gb|EEF46051.1| ATP-binding cassette transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 968 bits (2502), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 482/616 (78%), Positives = 533/616 (86%), Gaps = 22/616 (3%)
Query: 1 MNKQGGCEIEAIGINYNVYTQKKE-TPFKIFTKNQLNDDHHAQEELSKLEEAADSDGVRR 59
M KQG CEIEA GINY + T++ E KIF K+Q S G++
Sbjct: 1 MRKQG-CEIEARGINYKISTKETELNLLKIFNKDQ----------------EPKSPGIKH 43
Query: 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSG 119
VL V+CKAKPWEILAIVGPSGAGKSSLLE+LAG+ PQ+GS FVN SP+DKAQF K+SG
Sbjct: 44 VLKEVNCKAKPWEILAIVGPSGAGKSSLLEVLAGRFAPQNGSIFVNQSPMDKAQFNKISG 103
Query: 120 YVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVR 179
YVTQRDTLFPLLTVEETLMFSAKLRLRLP +QLR+RVKSLV ELGL+HVA RVGDDRVR
Sbjct: 104 YVTQRDTLFPLLTVEETLMFSAKLRLRLPHSQLRSRVKSLVHELGLDHVATTRVGDDRVR 163
Query: 180 GISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIH 239
GISGGERRRVSIG DVIHDP+VLILDEPTSGLDSTSALQIIDMLKVMAETRGRT+ILSIH
Sbjct: 164 GISGGERRRVSIGVDVIHDPEVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTIILSIH 223
Query: 240 QPGFRIVKMFNSILMLANGSVLHHGTVDLLSVSLRMMGLQLPMHVNVVEFAIESIDLIQE 299
QPGFRIVK+ NSIL++ANGSVLHHGTVD L V+LR +GL+LP+H NVVEFAIESI++IQ+
Sbjct: 224 QPGFRIVKLLNSILLMANGSVLHHGTVDQLGVNLRNIGLELPLHFNVVEFAIESIEVIQQ 283
Query: 300 QRKIQQENQPRMMLPATQQQ---KKAEE-GESRSGKFTLQQLFQQSKVIDEEIMNVGIEI 355
Q+ + ++ +P++ Q KKAEE GESRSGKFTLQQLFQQSKV+DE+I++VGI+I
Sbjct: 284 QQIKVVGQEVQLQVPSSTAQLQIKKAEEVGESRSGKFTLQQLFQQSKVVDEDIIDVGIDI 343
Query: 356 PRDFANSRFKETIILTHRFSKNIFRTKELFACRTIQMLISGIVLGSIFHNVKDDLTGTEE 415
PR FANSR +E +ILTHRFSKNIFRTKELFACRTIQMLI GIVLGSIF NVKDD+ G EE
Sbjct: 344 PRGFANSRLQEIVILTHRFSKNIFRTKELFACRTIQMLICGIVLGSIFCNVKDDIAGAEE 403
Query: 416 KVGLFAFILTFLLSCTTEALPIFLQEREILMKETSCGSYRVSSYAIANGLVYLPFLLILA 475
+VGLFAFILTFLLSCTTEALPIFLQEREILMKETSCGSYRVSSYAIANGLVYLPFLLILA
Sbjct: 404 RVGLFAFILTFLLSCTTEALPIFLQEREILMKETSCGSYRVSSYAIANGLVYLPFLLILA 463
Query: 476 ILFSVPLYWIVGLNPNLMAFFHFLLLIWLILYTANSVVVCFSALVPNFIVGNSVISGVMG 535
ILFSVPLYW+VGLNP++ AF HFLLLIW+ILYTANSVVVCFSALVPNFIVGNSVISGVMG
Sbjct: 464 ILFSVPLYWLVGLNPSVSAFMHFLLLIWMILYTANSVVVCFSALVPNFIVGNSVISGVMG 523
Query: 536 SFFLFSGYFISKHGIPDYWIFMHYISLFKYPFEQFLINEFSDSDKCLQYIFGKCVVKGED 595
SFFLFSGYFISKHGIP+YWIFMHYISLFKYPFE FLINEFS S KCLQY+ G C+V GED
Sbjct: 524 SFFLFSGYFISKHGIPNYWIFMHYISLFKYPFEGFLINEFSKSGKCLQYMLGACMVSGED 583
Query: 596 VLREAGYEEESSWRNL 611
VLRE GY EE S +L
Sbjct: 584 VLREEGYGEEISSTHL 599
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356512848|ref|XP_003525127.1| PREDICTED: ABC transporter G family member 5-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 966 bits (2497), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 486/645 (75%), Positives = 554/645 (85%), Gaps = 9/645 (1%)
Query: 6 GCEIEAIGINYNVYTQKKETPFKIFTKN--QLNDDHHAQEELSKLEEAADSDGVRRVLDG 63
GCE++AIGINY ++T K E PFKIF+ L+ + +E + E GVR VL
Sbjct: 4 GCEVDAIGINYTIHTHKSEHPFKIFSNKSAHLDTEQDGKEPEEEAEVEQSCSGVRHVLKN 63
Query: 64 VSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQ 123
VS +AKPWEILAIVGPSGAGKSSLLEILAGK +PQSG+ F+N P+DKAQFRK+SGYVTQ
Sbjct: 64 VSFQAKPWEILAIVGPSGAGKSSLLEILAGKHSPQSGTVFLNHKPVDKAQFRKLSGYVTQ 123
Query: 124 RDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISG 183
+DTLFPLLTVEETLMFSAKLRL+L Q QL +RVKSL++ELGL++VA R+GDDRVRGISG
Sbjct: 124 KDTLFPLLTVEETLMFSAKLRLKLSQEQLCSRVKSLIQELGLDNVAGTRIGDDRVRGISG 183
Query: 184 GERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGF 243
GERRRVSIG +VIHDPKVLILDEPTSGLDSTSALQIIDMLKVMA+TRGRT+ILSIHQPGF
Sbjct: 184 GERRRVSIGVEVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMADTRGRTIILSIHQPGF 243
Query: 244 RIVKMFNSILMLANGSVLHHGTVDLLSVSLRMMGLQLPMHVNVVEFAIESIDLIQEQRKI 303
RIVK+FNS+L+LANGSVLHHGT DLLSV+LR+MGL+LP+HVNVVEFAIESID IQ+Q+K
Sbjct: 244 RIVKLFNSLLLLANGSVLHHGTADLLSVNLRLMGLELPLHVNVVEFAIESIDTIQQQQKC 303
Query: 304 Q--QENQPRMMLPATQQQKKA---EEGESRSGKFTLQQLFQQSKVIDEEIMNVGIEIPRD 358
Q PR LP T QQKK E GE R+GK TLQQLFQQSKVIDE+ M G++ +
Sbjct: 304 VPVQVETPRQ-LPGTIQQKKGGDGEAGEGRNGKLTLQQLFQQSKVIDEQTMYAGMDFTSE 362
Query: 359 FANSRFKETIILTHRFSKNIFRTKELFACRTIQMLISGIVLGSIFHNVKDDLTGTEEKVG 418
FANSR +ET+IL+HRFS NIFRTKELFACRT+QML+SG+V+GSIF N+KDDL G E+VG
Sbjct: 363 FANSRLRETMILSHRFSMNIFRTKELFACRTVQMLVSGLVVGSIFCNLKDDLEGAFERVG 422
Query: 419 LFAFILTFLLSCTTEALPIFLQEREILMKETSCGSYRVSSYAIANGLVYLPFLLILAILF 478
LFAFILTFLLS + EALPIFLQEREILMKETSCGSYRVSSYAIANGLVYLPFLLILAILF
Sbjct: 423 LFAFILTFLLSSSIEALPIFLQEREILMKETSCGSYRVSSYAIANGLVYLPFLLILAILF 482
Query: 479 SVPLYWIVGLNPNLMAFFHFLLLIWLILYTANSVVVCFSALVPNFIVGNSVISGVMGSFF 538
S+PLYW+VGLN N +AF HFLLLIWLILYTANSVVVCFSALVPNFIVGNSVI+GV+GSFF
Sbjct: 483 SMPLYWLVGLNRNFLAFLHFLLLIWLILYTANSVVVCFSALVPNFIVGNSVIAGVIGSFF 542
Query: 539 LFSGYFISKHGIPDYWIFMHYISLFKYPFEQFLINEFSDSDKCLQYIFGKCVVKGEDVLR 598
LFSGYFISK IP+YWIFMHYISLFKYPFE FLINEFS+S KCL+Y+FG C+ GEDVL+
Sbjct: 543 LFSGYFISKQEIPNYWIFMHYISLFKYPFEGFLINEFSNSGKCLEYMFGACIKSGEDVLK 602
Query: 599 EAGYEEESS-WRNLVIMVGFILIYRFISYVILRFRCSQRSFRRAL 642
E GY ES+ W+N+ + V FIL+YRFISYVILR+RCSQR F R +
Sbjct: 603 EEGYGGESNRWKNVGVTVCFILVYRFISYVILRYRCSQRGFGRVV 647
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225438375|ref|XP_002274622.1| PREDICTED: ABC transporter G family member 5 isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 964 bits (2493), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 489/647 (75%), Positives = 547/647 (84%), Gaps = 19/647 (2%)
Query: 3 KQGGCEIEAIGINYNVYTQKKE--TPFKIFTKNQLNDDHHAQEELSKLEEAADSDGVRRV 60
K+ GCEIEAIGINY +YT K E +PFKIF K + S GVR V
Sbjct: 2 KKQGCEIEAIGINYQIYTHKGEQSSPFKIFNKQVVKG-------------GTLSPGVRHV 48
Query: 61 LDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGY 120
L V+C+AKPWEILAIVGPSGAGKSSLLEILAGK+ PQ+ S VN P+DKAQF+K+SG+
Sbjct: 49 LKDVNCEAKPWEILAIVGPSGAGKSSLLEILAGKIAPQTASICVNQKPMDKAQFKKISGF 108
Query: 121 VTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRG 180
V Q+DTLFPLLTVEETLMFSAKLRLRLP AQL ++VKSL++ELGLEHVA RVGDD+ RG
Sbjct: 109 VAQKDTLFPLLTVEETLMFSAKLRLRLPPAQLISKVKSLIQELGLEHVAGVRVGDDKARG 168
Query: 181 ISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQ 240
ISGGERRRVSIG D +HDPKVLILDEPTSGLDSTSALQIIDMLK MAE+RGRT+ILSIHQ
Sbjct: 169 ISGGERRRVSIGVDAVHDPKVLILDEPTSGLDSTSALQIIDMLKTMAESRGRTIILSIHQ 228
Query: 241 PGFRIVKMFNSILMLANGSVLHHGTVDLLSVSLRMMGLQLPMHVNVVEFAIESIDLIQEQ 300
PGFRIVK+FNSIL+LANGSVLHHGTV+ L ++LR+MGL+ P+HVN+VE+AIESI+ IQEQ
Sbjct: 229 PGFRIVKLFNSILLLANGSVLHHGTVEQLGLNLRLMGLEPPLHVNIVEYAIESIENIQEQ 288
Query: 301 RKIQQENQPRMMLPATQQQKKAEE---GESRSGKFTLQQLFQQSKVIDEEIM-NVGIEIP 356
++ +Q+ Q + Q+ A+ RSG TLQQLFQQSKVIDEEI+ N I+
Sbjct: 289 KQQRQQKQQQQQQAVVQESTAAQLQAIPRGRSGNCTLQQLFQQSKVIDEEIIINTSIDFA 348
Query: 357 RDFANSRFKETIILTHRFSKNIFRTKELFACRTIQMLISGIVLGSIFHNVKDDLTGTEEK 416
R FANSRF+ETIILTHRFSKNIFRTKELFACRT+QMLI+G+VLGSIF+ +KD+L G EE+
Sbjct: 349 RGFANSRFRETIILTHRFSKNIFRTKELFACRTLQMLIAGLVLGSIFYQLKDNLIGAEER 408
Query: 417 VGLFAFILTFLLSCTTEALPIFLQEREILMKETSCGSYRVSSYAIANGLVYLPFLLILAI 476
VGLFAFILTFLLSCTTEALPIFLQER+ILMKETS GSYRVSSYAIANGLVYLPFLLILAI
Sbjct: 409 VGLFAFILTFLLSCTTEALPIFLQERDILMKETSSGSYRVSSYAIANGLVYLPFLLILAI 468
Query: 477 LFSVPLYWIVGLNPNLMAFFHFLLLIWLILYTANSVVVCFSALVPNFIVGNSVISGVMGS 536
LFS+PLY +VGLNPN MAF HFL LIWLILYTANSVVVCFSALVPNFIVG SVISGVMGS
Sbjct: 469 LFSLPLYLLVGLNPNFMAFMHFLFLIWLILYTANSVVVCFSALVPNFIVGYSVISGVMGS 528
Query: 537 FFLFSGYFISKHGIPDYWIFMHYISLFKYPFEQFLINEFSDSDKCLQYIFGKCVVKGEDV 596
FFLFSGYFISK+G+PDYWIFMHYISLFKYPFE FLINEFS KCL Y+FG CVVKGEDV
Sbjct: 529 FFLFSGYFISKNGMPDYWIFMHYISLFKYPFEGFLINEFSGPGKCLDYMFGTCVVKGEDV 588
Query: 597 LREAGYEEESSWRNLVIMVGFILIYRFISYVILRFRCSQRSFRRALV 643
LRE GY EES WRN+VIMV FIL+YRFISYVILR RCSQRS + LV
Sbjct: 589 LREEGYGEESRWRNVVIMVCFILLYRFISYVILRCRCSQRSLKGVLV 635
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356507458|ref|XP_003522483.1| PREDICTED: ABC transporter G family member 5-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 964 bits (2492), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 476/640 (74%), Positives = 548/640 (85%), Gaps = 14/640 (2%)
Query: 3 KQGGCEIEAIGINYNVYTQKKETPFKIFTK---NQLNDDHHAQEELSKLEEAADSDGVRR 59
K+ GCE+EAIGINY + T+ E PFKIFTK + D H A+EE GVR
Sbjct: 2 KKEGCEVEAIGINYKIRTKTTEQPFKIFTKPPQSNREDVHEAKEE------ERPCSGVRH 55
Query: 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSG 119
VL V+C AKPWEI AIVGPSGAGKSSLLEILAGK +PQSGS VN P+DKA+FRK SG
Sbjct: 56 VLKDVNCMAKPWEISAIVGPSGAGKSSLLEILAGKASPQSGSILVNQEPVDKAKFRKFSG 115
Query: 120 YVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVR 179
YVTQ+DTLFPLLTVEET+MF AKLRL LPQ QLR RVKSL+ ELGL HVA R+GD+RVR
Sbjct: 116 YVTQKDTLFPLLTVEETIMFIAKLRLNLPQEQLRYRVKSLILELGLSHVARTRIGDERVR 175
Query: 180 GISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIH 239
GISGGERRRVSIG +VIHDPKVLILDEPTSGLDSTSALQII+MLKVMA++RGRT+ILSIH
Sbjct: 176 GISGGERRRVSIGVEVIHDPKVLILDEPTSGLDSTSALQIIEMLKVMADSRGRTIILSIH 235
Query: 240 QPGFRIVKMFNSILMLANGSVLHHGTVDLLSVSLRMMGLQLPMHVNVVEFAIESIDLIQE 299
QPG+RIVK+FNS+L+LANG+VLHHGTVDLL V+LR+MGL+LP+HVNVVEFAI+SI+ IQ+
Sbjct: 236 QPGYRIVKLFNSLLLLANGNVLHHGTVDLLGVNLRLMGLELPLHVNVVEFAIDSIETIQQ 295
Query: 300 QRKIQ--QENQPRMMLPATQQQKKAEE-GESRSGKFTLQQLFQQSKVIDEEIMNVGIEIP 356
Q+K + Q PR LP T QQKK + GESRSGKFTLQQLFQQSK+ID EI++ G++I
Sbjct: 296 QQKSEHVQLEVPRR-LPGTMQQKKGGDLGESRSGKFTLQQLFQQSKIIDIEIISSGMDIT 354
Query: 357 RDFANSRFKETIILTHRFSKNIFRTKELFACRTIQMLISGIVLGSIFHNVKDDLTGTEEK 416
RDFANS +ET+ILTHRFSKNI RT ELFACRTIQML+SG+VLGS+F N+KD L G EE+
Sbjct: 355 RDFANSGLRETMILTHRFSKNILRTTELFACRTIQMLVSGLVLGSVFCNLKDGLVGAEER 414
Query: 417 VGLFAFILTFLLSCTTEALPIFLQEREILMKETSCGSYRVSSYAIANGLVYLPFLLILAI 476
VGLFAFILTFLLS TTEALPIFLQEREILMKETS GSYRVSSYAIANGLVYLPFLLILAI
Sbjct: 415 VGLFAFILTFLLSSTTEALPIFLQEREILMKETSSGSYRVSSYAIANGLVYLPFLLILAI 474
Query: 477 LFSVPLYWIVGLNPNLMAFFHFLLLIWLILYTANSVVVCFSALVPNFIVGNSVISGVMGS 536
LF++PLYW++GLN N A +FL+LIWL+L TANS+VVCFSALVPNFIVGNS+I+GV+GS
Sbjct: 475 LFAMPLYWLIGLNRNFTAVLYFLMLIWLVLCTANSIVVCFSALVPNFIVGNSMIAGVIGS 534
Query: 537 FFLFSGYFISKHGIPDYWIFMHYISLFKYPFEQFLINEFSDSDKCLQYIFGKCVVKGEDV 596
F LFSGYFISKH IP+YWIFMHYIS FKYPFE FLINEFS+S+ CL+Y+FG+CVV+GEDV
Sbjct: 535 FLLFSGYFISKHEIPNYWIFMHYISPFKYPFEGFLINEFSNSNNCLEYLFGECVVRGEDV 594
Query: 597 LREAGYEEESS-WRNLVIMVGFILIYRFISYVILRFRCSQ 635
L+EA E+S W+N+ +MV FI +YRFISYVILR+RCSQ
Sbjct: 595 LKEAKLGGETSRWKNVGVMVCFIFVYRFISYVILRYRCSQ 634
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15225446|ref|NP_178984.1| ABC transporter G family member 5 [Arabidopsis thaliana] gi|75337284|sp|Q9SIT6.1|AB5G_ARATH RecName: Full=ABC transporter G family member 5; Short=ABC transporter ABCG.5; Short=AtABCG5; AltName: Full=White-brown complex homolog protein 5; Short=AtWBC5 gi|4558665|gb|AAD22683.1| putative ABC transporter [Arabidopsis thaliana] gi|14532696|gb|AAK64149.1| putative ABC transporter protein [Arabidopsis thaliana] gi|22136942|gb|AAM91815.1| putative ABC transporter protein [Arabidopsis thaliana] gi|330251151|gb|AEC06245.1| ABC transporter G family member 5 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 952 bits (2461), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 473/650 (72%), Positives = 543/650 (83%), Gaps = 10/650 (1%)
Query: 1 MNKQGGCEIEAIGINYNVYTQK-KETPFKIFTKN---QLNDDHHAQEELSKLEEAADSDG 56
M KQG CEIEA+ I+YN++ +K PF IF + + + +EE KLE+ +
Sbjct: 1 MEKQG-CEIEALDIDYNIFVRKINVNPFGIFRRKPRPEADQPVKTEEESLKLEDET-GNK 58
Query: 57 VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRK 116
V+ VL GV+C+AKPWEILAIVGPSGAGKSSLLEILA +L PQ+GS +VN P+D+A F+K
Sbjct: 59 VKHVLKGVTCRAKPWEILAIVGPSGAGKSSLLEILAARLIPQTGSVYVNKRPVDRANFKK 118
Query: 117 VSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDD 176
+SGYVTQ+DTLFPLLTVEETL+FSAKLRL+LP +LR+RVKSLV ELGLE VA ARVGDD
Sbjct: 119 ISGYVTQKDTLFPLLTVEETLLFSAKLRLKLPADELRSRVKSLVHELGLEAVATARVGDD 178
Query: 177 RVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVIL 236
VRGISGGERRRVSIG +VIHDPKVLILDEPTSGLDSTSAL IIDMLK MAETRGRT+IL
Sbjct: 179 SVRGISGGERRRVSIGVEVIHDPKVLILDEPTSGLDSTSALLIIDMLKHMAETRGRTIIL 238
Query: 237 SIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSVSLRMMGLQLPMHVNVVEFAIESIDL 296
+IHQPGFRIVK FNS+L+LANGS L G+VD L V LR GL P+H N+VEFAIESI+
Sbjct: 239 TIHQPGFRIVKQFNSVLLLANGSTLKQGSVDQLGVYLRSNGLHPPLHENIVEFAIESIES 298
Query: 297 IQEQRKIQQENQPRMMLP--ATQQQKKAEE--GESRSGKFTLQQLFQQSKVIDEEIMNVG 352
I +Q+++Q+ + +L T Q+K++E+ GES+SGKFTLQQLFQQ++V D MN+
Sbjct: 299 ITKQQRLQESRRAAHVLTPQTTLQEKRSEDSQGESKSGKFTLQQLFQQTRVADVGTMNIA 358
Query: 353 IEIPRDFANSRFKETIILTHRFSKNIFRTKELFACRTIQMLISGIVLGSIFHNVKDDLTG 412
E RDFANSR +ET+ILTHRFSKNIFRTKELFACRT+QML SGIVLG IFHN+KDDL G
Sbjct: 359 TEFTRDFANSRLEETMILTHRFSKNIFRTKELFACRTVQMLGSGIVLGLIFHNLKDDLKG 418
Query: 413 TEEKVGLFAFILTFLLSCTTEALPIFLQEREILMKETSCGSYRVSSYAIANGLVYLPFLL 472
E+VGLFAFILTFLL+ T EALPIFLQEREILMKETS GSYRVSSYA+ANGLVYLPFLL
Sbjct: 419 ARERVGLFAFILTFLLTSTIEALPIFLQEREILMKETSSGSYRVSSYAVANGLVYLPFLL 478
Query: 473 ILAILFSVPLYWIVGLNPNLMAFFHFLLLIWLILYTANSVVVCFSALVPNFIVGNSVISG 532
ILAILFS P+YW+VGLNP+ MAF HF LLIWLILYTANSVVVCFSALVPNFIVGNSVISG
Sbjct: 479 ILAILFSTPVYWLVGLNPSFMAFLHFSLLIWLILYTANSVVVCFSALVPNFIVGNSVISG 538
Query: 533 VMGSFFLFSGYFISKHGIPDYWIFMHYISLFKYPFEQFLINEFSDSDKCLQYIFGKCVVK 592
VMGSFFLFSGYFIS H IP YWIFMHYISLFKYPFE FLINEFS S+KCL+Y FGKC+V
Sbjct: 539 VMGSFFLFSGYFISNHEIPGYWIFMHYISLFKYPFEGFLINEFSKSNKCLEYGFGKCLVT 598
Query: 593 GEDVLREAGYEEESSWRNLVIMVGFILIYRFISYVILRFRCSQRSFRRAL 642
ED+L+E Y EES WRN+VIM+ F+L+YRFISYVILR RCSQRSF+ L
Sbjct: 599 EEDLLKEERYGEESRWRNVVIMLCFVLLYRFISYVILRCRCSQRSFKTTL 648
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297836004|ref|XP_002885884.1| abc transporter family protein [Arabidopsis lyrata subsp. lyrata] gi|297331724|gb|EFH62143.1| abc transporter family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 947 bits (2448), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 473/650 (72%), Positives = 544/650 (83%), Gaps = 10/650 (1%)
Query: 1 MNKQGGCEIEAIGINYNVYTQK-KETPFKIF---TKNQLNDDHHAQEELSKLEEAADSDG 56
M K+G CEIEA+ I+YN++ +K PF IF + + + +EE KLE + +
Sbjct: 1 MEKEG-CEIEALDIDYNIFVRKFNVNPFGIFRPKPRPEADQPVKTEEESWKLEHE-NGNK 58
Query: 57 VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRK 116
V+ VL GV+C+AKPWEILAIVGPSGAGKSSLLEILA +L PQ+GS FVN +P+D+A F+K
Sbjct: 59 VKHVLKGVTCRAKPWEILAIVGPSGAGKSSLLEILAARLIPQTGSVFVNKTPVDRANFKK 118
Query: 117 VSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDD 176
+SGYVTQ+DTLFPLLTVEETL+FSAKLRL+LP +LR+RVKSLV ELGLE VA ARVGDD
Sbjct: 119 ISGYVTQKDTLFPLLTVEETLLFSAKLRLKLPADELRSRVKSLVHELGLEAVAKARVGDD 178
Query: 177 RVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVIL 236
VRGISGGERRRVSIG +VIHDPKVLILDEPTSGLDSTSAL IIDMLK MAETRGRT+IL
Sbjct: 179 SVRGISGGERRRVSIGVEVIHDPKVLILDEPTSGLDSTSALLIIDMLKHMAETRGRTIIL 238
Query: 237 SIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSVSLRMMGLQLPMHVNVVEFAIESIDL 296
SIHQPGFRIVK FNS+L+LANG L G+VD L V LR L P+H N+VEFAIESI+
Sbjct: 239 SIHQPGFRIVKQFNSVLLLANGLTLKQGSVDQLGVFLRSNDLHPPLHENIVEFAIESIEA 298
Query: 297 IQEQRKIQQENQPRMMLPA--TQQQKKAEE--GESRSGKFTLQQLFQQSKVIDEEIMNVG 352
I +Q+++Q+ + +L + T Q+K++E+ GES+SGKFTLQQLFQQ++V D MN+
Sbjct: 299 ITKQQRLQESRRAAHVLTSQTTLQEKRSEDSQGESKSGKFTLQQLFQQTRVADVGTMNIV 358
Query: 353 IEIPRDFANSRFKETIILTHRFSKNIFRTKELFACRTIQMLISGIVLGSIFHNVKDDLTG 412
E RDFANSR +ET+ILTHRFSKNIFRTKELFACRT+QML SGIVLG IFHN+KDDL G
Sbjct: 359 TEFTRDFANSRLEETMILTHRFSKNIFRTKELFACRTVQMLGSGIVLGLIFHNLKDDLKG 418
Query: 413 TEEKVGLFAFILTFLLSCTTEALPIFLQEREILMKETSCGSYRVSSYAIANGLVYLPFLL 472
E+VGLFAFILTFLL+ T EALPIFLQEREILMKE S GSYRVSSYAIANGLVYLPFLL
Sbjct: 419 ARERVGLFAFILTFLLTSTIEALPIFLQEREILMKEISSGSYRVSSYAIANGLVYLPFLL 478
Query: 473 ILAILFSVPLYWIVGLNPNLMAFFHFLLLIWLILYTANSVVVCFSALVPNFIVGNSVISG 532
ILAILFS+P+YW+VGLNPN MAF HFLLLIWLILYTANSVVVCFSALVPNFIVGNSVISG
Sbjct: 479 ILAILFSLPVYWLVGLNPNFMAFLHFLLLIWLILYTANSVVVCFSALVPNFIVGNSVISG 538
Query: 533 VMGSFFLFSGYFISKHGIPDYWIFMHYISLFKYPFEQFLINEFSDSDKCLQYIFGKCVVK 592
VMGSFFLFSGYFIS H IP YWIFMHYISLFKYPFE FLI+EFS S KCL+Y FGKC+V
Sbjct: 539 VMGSFFLFSGYFISNHEIPGYWIFMHYISLFKYPFEGFLISEFSKSSKCLEYGFGKCLVT 598
Query: 593 GEDVLREAGYEEESSWRNLVIMVGFILIYRFISYVILRFRCSQRSFRRAL 642
ED+L+E Y EE+ WRN+VIM+ F+L+YRFISYVILR RCSQRSF+ AL
Sbjct: 599 EEDLLKEERYGEENRWRNVVIMLCFVLLYRFISYVILRCRCSQRSFKTAL 648
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356518775|ref|XP_003528053.1| PREDICTED: ABC transporter G family member 5-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 939 bits (2426), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 466/637 (73%), Positives = 536/637 (84%), Gaps = 28/637 (4%)
Query: 3 KQGGCEIEAIGINYNVYTQKKETPFKIFTK-NQLN--DDHHAQEELSKLEEAADSDGVRR 59
K+ GCE+EAIGINY + T+ E PFKIFTK QLN +D H E+ E GVR
Sbjct: 72 KKQGCEVEAIGINYKIRTKTTEKPFKIFTKLPQLNREEDVHEAED-----EQRSCRGVRH 126
Query: 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSG 119
VL V+C AKPWEILAIVGPSGAGK+SLLEILAGK +PQSGS VN P+DKA+F+K SG
Sbjct: 127 VLKDVNCMAKPWEILAIVGPSGAGKTSLLEILAGKASPQSGSILVNQEPVDKAEFKKFSG 186
Query: 120 YVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVR 179
YVTQ+DTLFPLLTVEET+MFSAKLRL LP+ QL +RVKSL+ ELGL HVA R+GD+ VR
Sbjct: 187 YVTQKDTLFPLLTVEETIMFSAKLRLNLPREQLFSRVKSLILELGLGHVARTRIGDESVR 246
Query: 180 GISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIH 239
GISGGERRRVSIG +VIHDPKVLILDEPTSGLDS SALQII+MLKVMA++RGRT+ILSIH
Sbjct: 247 GISGGERRRVSIGVEVIHDPKVLILDEPTSGLDSNSALQIIEMLKVMADSRGRTIILSIH 306
Query: 240 QPGFRIVKMFNSILMLANGSVLHHGTVDLLSVSLRMMGLQLPMHVNVVEFAIESIDLIQE 299
QP +RIVK+FNS+L+LANG+VLHHGTVDL+ V+LR+MGL+LP+HVNVVEFAI+SI+ IQ+
Sbjct: 307 QPRYRIVKLFNSLLLLANGNVLHHGTVDLMGVNLRLMGLELPLHVNVVEFAIDSIETIQQ 366
Query: 300 QRKIQQENQPRMMLPATQQQKKAEEGESRSGKFTLQQLFQQSKVIDEEIMNVGIEIPRDF 359
Q+K Q GESRSGKFTLQQLFQQSKVID EI++ G++I F
Sbjct: 367 QQKFQH-------------------GESRSGKFTLQQLFQQSKVIDIEIISSGMDITCGF 407
Query: 360 ANSRFKETIILTHRFSKNIFRTKELFACRTIQMLISGIVLGSIFHNVKDDLTGTEEKVGL 419
ANS +ET+ILTHRFSKNI RTKELFACRTIQML+SG+VLGS+F N+KD L G EE+VGL
Sbjct: 408 ANSGLRETMILTHRFSKNILRTKELFACRTIQMLVSGLVLGSVFCNLKDGLVGAEERVGL 467
Query: 420 FAFILTFLLSCTTEALPIFLQEREILMKETSCGSYRVSSYAIANGLVYLPFLLILAILFS 479
FAFILTFLLS TTEALPIFLQEREILMKETS GSYRVSSYAIANGLVYLPFLLILAILF+
Sbjct: 468 FAFILTFLLSSTTEALPIFLQEREILMKETSSGSYRVSSYAIANGLVYLPFLLILAILFT 527
Query: 480 VPLYWIVGLNPNLMAFFHFLLLIWLILYTANSVVVCFSALVPNFIVGNSVISGVMGSFFL 539
+PLYW++GLN N AF +FL+ IWLIL TANSVVVCFSALVPNFIVGNS+I+GV+GSF L
Sbjct: 528 MPLYWLIGLNRNFTAFLYFLMQIWLILNTANSVVVCFSALVPNFIVGNSMIAGVIGSFLL 587
Query: 540 FSGYFISKHGIPDYWIFMHYISLFKYPFEQFLINEFSDSDKCLQYIFGKCVVKGEDVLRE 599
FSGYFISKH IP YWIFMHYIS FKYPFE FLINEFS+S+KCL+Y+FG CVV+G DVL+E
Sbjct: 588 FSGYFISKHEIPSYWIFMHYISPFKYPFEGFLINEFSNSNKCLEYLFGTCVVRGADVLKE 647
Query: 600 AGYEEESS-WRNLVIMVGFILIYRFISYVILRFRCSQ 635
A E+S W+N+ +MV FIL+YRFISYVILR+RCSQ
Sbjct: 648 AKLGGETSRWKNVGVMVCFILVYRFISYVILRYRCSQ 684
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224093444|ref|XP_002309921.1| white-brown-complex ABC transporter family [Populus trichocarpa] gi|222852824|gb|EEE90371.1| white-brown-complex ABC transporter family [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 937 bits (2422), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 458/578 (79%), Positives = 504/578 (87%), Gaps = 35/578 (6%)
Query: 58 RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKV 117
R VL V CKAKPWEILAIVGPSGAGKSSLLE+LAGKLTPQSGS FVN +PI+KAQF+K
Sbjct: 1 RHVLKDVYCKAKPWEILAIVGPSGAGKSSLLEVLAGKLTPQSGSIFVNQNPINKAQFKKA 60
Query: 118 SGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDR 177
SGYVTQ+DTLFPLLTVEETLMFSAKLRLRLPQ QL + VK L+ ELGL+HVAM RVGDDR
Sbjct: 61 SGYVTQKDTLFPLLTVEETLMFSAKLRLRLPQDQLSSEVKFLMHELGLDHVAMTRVGDDR 120
Query: 178 VRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILS 237
VRGISGGERRRVSIG DVIHDP+VLILDEPTSGLDSTSALQIIDMLK+MAETRGRT+ILS
Sbjct: 121 VRGISGGERRRVSIGVDVIHDPEVLILDEPTSGLDSTSALQIIDMLKLMAETRGRTIILS 180
Query: 238 IHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSVSLRMMGLQLPMHVNVVEFAIESIDLI 297
IHQPGFRIVK+FNS+L++ANGSVLHHGTVD L V+LR MG+QLP+H NVVEFA+ESID +
Sbjct: 181 IHQPGFRIVKLFNSVLLMANGSVLHHGTVDQLGVNLRTMGMQLPLHANVVEFALESIDTV 240
Query: 298 QEQRKI-QQENQPRMMLPAT--QQQKKAEEGESRSGKFTLQQLFQQSKVIDEEIMNVGIE 354
Q+QRK+ QQE QP+++ +T +QKK E GESRSGK
Sbjct: 241 QQQRKVLQQETQPQLLSSSTTKSRQKKVEVGESRSGKL---------------------- 278
Query: 355 IPRDFANSRFKETIILTHRFSKNIFRTKELFACRTIQMLISGIVLGSIFHNVKDDLTGTE 414
+ET+ILTHRFSKNIFRTKELFACRTIQMLISG+VLGSIF+N+KDDLTG E
Sbjct: 279 ----------QETLILTHRFSKNIFRTKELFACRTIQMLISGLVLGSIFYNLKDDLTGAE 328
Query: 415 EKVGLFAFILTFLLSCTTEALPIFLQEREILMKETSCGSYRVSSYAIANGLVYLPFLLIL 474
E+VGLFAFILTFLLSCTTEALPIFLQEREILMKETSCGSYRVSSYAIANGLVYLPFLLIL
Sbjct: 329 ERVGLFAFILTFLLSCTTEALPIFLQEREILMKETSCGSYRVSSYAIANGLVYLPFLLIL 388
Query: 475 AILFSVPLYWIVGLNPNLMAFFHFLLLIWLILYTANSVVVCFSALVPNFIVGNSVISGVM 534
AILF++PLYW+VGLNPN MAF HFLLLIWLILYTANSVVVCFSALVPNFIVGNSVISGVM
Sbjct: 389 AILFTIPLYWLVGLNPNFMAFMHFLLLIWLILYTANSVVVCFSALVPNFIVGNSVISGVM 448
Query: 535 GSFFLFSGYFISKHGIPDYWIFMHYISLFKYPFEQFLINEFSDSDKCLQYIFGKCVVKGE 594
GSFFLFSGYFISKHG+P+YWIFMHYISLFKYPFE FLINEFS+S KCL+Y+FGKC+V E
Sbjct: 449 GSFFLFSGYFISKHGMPNYWIFMHYISLFKYPFEGFLINEFSNSGKCLEYMFGKCMVSAE 508
Query: 595 DVLREAGYEEESSWRNLVIMVGFILIYRFISYVILRFR 632
D+LRE GY E+ WRN+VIMV FIL+YRFISYVILR R
Sbjct: 509 DLLREEGYGEDGKWRNVVIMVCFILVYRFISYVILRLR 546
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 643 | ||||||
| TAIR|locus:2054142 | 649 | ABCG5 "ATP-binding cassette G5 | 0.995 | 0.986 | 0.706 | 2.3e-236 | |
| TAIR|locus:2009640 | 590 | ABCG10 "ATP-binding cassette G | 0.401 | 0.437 | 0.516 | 5.3e-132 | |
| TAIR|locus:2150290 | 624 | ABCG23 "ATP-binding cassette G | 0.461 | 0.475 | 0.458 | 1.7e-120 | |
| TAIR|locus:2176937 | 589 | ABCG8 "ATP-binding cassette G8 | 0.429 | 0.468 | 0.430 | 2.8e-120 | |
| TAIR|locus:2173184 | 727 | ABCG6 "ATP-binding cassette G6 | 0.818 | 0.723 | 0.380 | 3.3e-98 | |
| TAIR|locus:2097218 | 708 | ABCG18 "ATP-binding cassette G | 0.836 | 0.759 | 0.364 | 2.3e-97 | |
| TAIR|locus:2039682 | 740 | ABCG1 "ATP-binding cassette G1 | 0.867 | 0.754 | 0.346 | 1.8e-95 | |
| TAIR|locus:2049806 | 755 | ABCG2 "ATP-binding cassette G2 | 0.805 | 0.686 | 0.366 | 3.8e-95 | |
| TAIR|locus:2097208 | 662 | ABCG17 "ATP-binding cassette G | 0.856 | 0.832 | 0.362 | 9.9e-95 | |
| TAIR|locus:2083946 | 739 | ABCG20 "ATP-binding cassette G | 0.800 | 0.696 | 0.374 | 2.1e-94 |
| TAIR|locus:2054142 ABCG5 "ATP-binding cassette G5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2279 (807.3 bits), Expect = 2.3e-236, P = 2.3e-236
Identities = 459/650 (70%), Positives = 526/650 (80%)
Query: 1 MNKQGGCEIEAIGINYNVYTQK-KETPFKIFTKN---QLNDDHHAQEELSKLEEAADSDG 56
M KQG CEIEA+ I+YN++ +K PF IF + + + +EE KLE+ +
Sbjct: 1 MEKQG-CEIEALDIDYNIFVRKINVNPFGIFRRKPRPEADQPVKTEEESLKLEDETGNK- 58
Query: 57 VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRK 116
V+ VL GV+C+AKPWEILAIVGPSGAGKSSLLEILA +L PQ+GS +VN P+D+A F+K
Sbjct: 59 VKHVLKGVTCRAKPWEILAIVGPSGAGKSSLLEILAARLIPQTGSVYVNKRPVDRANFKK 118
Query: 117 VSGYVTQRDTLFPLLTVEETLMFSAKXXXXXXXXXXXXXVKSLVKELGLEHVAMARVGDD 176
+SGYVTQ+DTLFPLLTVEETL+FSAK VKSLV ELGLE VA ARVGDD
Sbjct: 119 ISGYVTQKDTLFPLLTVEETLLFSAKLRLKLPADELRSRVKSLVHELGLEAVATARVGDD 178
Query: 177 RVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVIL 236
VRGISGGERRRVSIG +VIHDPKVLILDEPTSGLDSTSAL IIDMLK MAETRGRT+IL
Sbjct: 179 SVRGISGGERRRVSIGVEVIHDPKVLILDEPTSGLDSTSALLIIDMLKHMAETRGRTIIL 238
Query: 237 SIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSVSLRMMGLQLPMHVNVVEFAIESIDL 296
+IHQPGFRIVK FNS+L+LANGS L G+VD L V LR GL P+H N+VEFAIESI+
Sbjct: 239 TIHQPGFRIVKQFNSVLLLANGSTLKQGSVDQLGVYLRSNGLHPPLHENIVEFAIESIES 298
Query: 297 IQEQRKIQQENQPRMML-PATQ-QQKKAEE--GESRSGKFTLQQLFQQSKVIDEEIMNVG 352
I +Q+++Q+ + +L P T Q+K++E+ GES+SGKFTLQQLFQQ++V D MN+
Sbjct: 299 ITKQQRLQESRRAAHVLTPQTTLQEKRSEDSQGESKSGKFTLQQLFQQTRVADVGTMNIA 358
Query: 353 IEIPRDFANSRFKETIILTHRFSKNIFRTKELFACRTIQMLISGIVLGSIFHNVKDDLTG 412
E RDFANSR +ET+ILTHRFSKNIFRTKELFACRT+QML SGIVLG IFHN+KDDL G
Sbjct: 359 TEFTRDFANSRLEETMILTHRFSKNIFRTKELFACRTVQMLGSGIVLGLIFHNLKDDLKG 418
Query: 413 TEEKVGLFAFILTFLLSCTTEALPIFLQEREILMKETSCGSYRVSSYAIANGLVYLPFLL 472
E+VGLFAFILTFLL+ T EALPIFLQEREILMKETS GSYRVSSYA+ANGLVYLPFLL
Sbjct: 419 ARERVGLFAFILTFLLTSTIEALPIFLQEREILMKETSSGSYRVSSYAVANGLVYLPFLL 478
Query: 473 ILAILFSVPLYWIVGLNPNLMAFFHFXXXXXXXXYTANSVVVCFSALVPNFIVGNSVISG 532
ILAILFS P+YW+VGLNP+ MAF HF YTANSVVVCFSALVPNFIVGNSVISG
Sbjct: 479 ILAILFSTPVYWLVGLNPSFMAFLHFSLLIWLILYTANSVVVCFSALVPNFIVGNSVISG 538
Query: 533 VMGSFFLFSGYFISKHGIPDYWIFMHYISLFKYPFEQFLINEFSDSDKCLQYIFGKCVVK 592
VMGSFFLFSGYFIS H IP YWIFMHYISLFKYPFE FLINEFS S+KCL+Y FGKC+V
Sbjct: 539 VMGSFFLFSGYFISNHEIPGYWIFMHYISLFKYPFEGFLINEFSKSNKCLEYGFGKCLVT 598
Query: 593 GEDVLREAGYEEESSWRNLVIMVGFILIYRFISYVILRFRCSQRSFRRAL 642
ED+L+E Y EES WRN+VIM+ F+L+YRFISYVILR RCSQRSF+ L
Sbjct: 599 EEDLLKEERYGEESRWRNVVIMLCFVLLYRFISYVILRCRCSQRSFKTTL 648
|
|
| TAIR|locus:2009640 ABCG10 "ATP-binding cassette G10" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 686 (246.5 bits), Expect = 5.3e-132, Sum P(2) = 5.3e-132
Identities = 142/275 (51%), Positives = 184/275 (66%)
Query: 360 ANSRFKETIILTHRFSKNIFRTKELFACRTIQMLISGIVLGSIFHNVKDDLTGTEE-KVG 418
+NS +E IL R KNIFRTK+LF R +Q I+G++LGSI+ NV + + + G
Sbjct: 327 SNSVLEEVQILGQRSCKNIFRTKQLFTTRALQASIAGLILGSIYLNVGNQKKEAKVLRTG 386
Query: 419 LFAFILTFLLSCTTEALPIFLQEREILMKETSCGSYRVSSYAIANGLVYLPFLLILAILF 478
FAFILTFLLS TTE LPIFLQ+R ILM+ETS +YRV SY +A+ L+++PFLLI+++LF
Sbjct: 387 FFAFILTFLLSSTTEGLPIFLQDRRILMRETSRRAYRVLSYVLADTLIFIPFLLIISMLF 446
Query: 479 SVPLYWIVGLNPNLMAFFHFXXXXXXXXYTANSVVVCFSALVPNFIVGNSVISGVMGSFF 538
+ P+YW+VGL L F +F +NS V CFSALVPNFI+G SVISG+MGSFF
Sbjct: 447 ATPVYWLVGLRRELDGFLYFSLVIWIVLLMSNSFVACFSALVPNFIMGTSVISGLMGSFF 506
Query: 539 LFSGYFISKHGIPDYWIFMHYISLFKYPFEQFLINEFSDSDKCLQYIFGKCVVKGEDVLR 598
LFSGYFI+K IP YW FMHY+SLFKYPFE +INE+ +G+ L+
Sbjct: 507 LFSGYFIAKDRIPVYWEFMHYLSLFKYPFECLMINEY----------------RGDVFLK 550
Query: 599 EAGYEEESSWRNLVIMVGFILIYRFISYVILRFRC 633
+ +E W NL IM FI+ YR + + IL +RC
Sbjct: 551 QQDLKESQKWSNLGIMASFIVGYRVLGFFILWYRC 585
|
|
| TAIR|locus:2150290 ABCG23 "ATP-binding cassette G23" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 688 (247.2 bits), Expect = 1.7e-120, Sum P(2) = 1.7e-120
Identities = 137/299 (45%), Positives = 202/299 (67%)
Query: 339 QQSKVIDEEIMNVGIEIPRD-FANSRFKETIILTHRFSKNIFRTKELFACRTIQMLISGI 397
+ S + E N GI ++ F E L RF K I+RTK+LF RT+Q +++G+
Sbjct: 323 ESSSMWPENNENDGIISKKEAFRVLDVTEISYLCSRFCKIIYRTKQLFLARTMQAVVAGL 382
Query: 398 VLGSIFHNVKDDLTGTEEKVGLFAFILTFLLSCTTEALPIFLQEREILMKETSCGSYRVS 457
LGS++ +K D G E++GLFAF L+FLLS T EALPI+L+ER +LMKE+S GSYR+S
Sbjct: 383 GLGSVYTRLKRDEEGVAERLGLFAFSLSFLLSSTVEALPIYLRERRVLMKESSRGSYRIS 442
Query: 458 SYAIANGLVYLPFLLILAILFSVPLYWIVGLNPNLMAFFHFXXXXXXXXYTANSVVVCFS 517
SY IAN + ++PFL ++++LFS+P+YWIVGLNP++ AF F A+S+V+ S
Sbjct: 443 SYMIANTIAFVPFLFVVSLLFSIPVYWIVGLNPSIQAFSFFVLCVWLIILMASSLVLFLS 502
Query: 518 ALVPNFIVGNSVISGVMGSFFLFSGYFISKHGIPDYWIFMHYISLFKYPFEQFLINEF-S 576
A+ P+FI GNS+I V+G+FFLFSGYFI K IP W+FM+Y+SL++YP E ++NE+ S
Sbjct: 503 AVSPDFISGNSLICTVLGAFFLFSGYFIPKEKIPKPWMFMYYVSLYRYPLESMVVNEYWS 562
Query: 577 DSDKCLQYIFGKCVVKGEDVLREAGYEEESSWRNLVIMVGFILIYRFISYVILRFRCSQ 635
++C C++ GEDVL+E G ++++ W N+ IM+ F + YR + + IL + S+
Sbjct: 563 MREECFSSGNMGCLMTGEDVLKERGLDKDTRWINVGIMLAFFVFYRILCWGILLRKASK 621
|
|
| TAIR|locus:2176937 ABCG8 "ATP-binding cassette G8" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 634 (228.2 bits), Expect = 2.8e-120, Sum P(2) = 2.8e-120
Identities = 121/281 (43%), Positives = 187/281 (66%)
Query: 359 FANSRFKETIILTHRFSKNIFRTKELFACRTIQMLISGIVLGSIFHNVKDDLTGTEEKVG 418
+ SR E +L RF K I+RT++L ++ L+ G+VLG+I+ N+ G E++ G
Sbjct: 305 YRKSRITEISLLARRFWKIIYRTRQLLLTNALEALVVGLVLGTIYINIGIGKAGIEKRFG 364
Query: 419 LFAFILTFLLSCTTEALPIFLQEREILMKETSCGSYRVSSYAIANGLVYLPFLLILAILF 478
+FAF LTFLLS TTE LPIF+ ER IL++ETS G YR+SS+ +AN LV+LP+L +++I++
Sbjct: 365 MFAFTLTFLLSSTTETLPIFINERPILLRETSSGIYRLSSHILANTLVFLPYLFVISIIY 424
Query: 479 SVPLYWIVGLNPNLMAFFHFXXXXXXXXYTANSVVVCFSALVPNFIVGNSVISGVMGSFF 538
SV +Y+++GL P AF +F ANS V+ S+L PN+I G S+++ ++ +FF
Sbjct: 425 SVSVYFLIGLCPTWQAFGYFVLVIWIILLMANSFVLFLSSLAPNYITGTSLVTILLAAFF 484
Query: 539 LFSGYFISKHGIPDYWIFMHYISLFKYPFEQFLINEFSD-SDKCLQYIFGK----CVVKG 593
LFSGYFISK +P YW+FM++ S++KY + LINE+S + KCL ++ C+V G
Sbjct: 485 LFSGYFISKESLPKYWLFMYFFSMYKYALDALLINEYSCLASKCLVWLEEAQTKICMVTG 544
Query: 594 EDVLREAGYEEESSWRNLVIMVGFILIYRFISYVILRFRCS 634
DVL++ G E+ W N+ +++GF ++YR + ++ L R S
Sbjct: 545 GDVLKKKGLHEKQRWFNVYVLLGFFVLYRVLCFLALLRRVS 585
|
|
| TAIR|locus:2173184 ABCG6 "ATP-binding cassette G6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 935 (334.2 bits), Expect = 3.3e-98, Sum P(2) = 3.3e-98
Identities = 208/546 (38%), Positives = 320/546 (58%)
Query: 50 EAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQS--GSTFVNGS 107
E S + +L+G++ +A+ EILA++G SG+GKS+L++ LA ++ S G+ +NG
Sbjct: 98 EGIFSSKTKTLLNGITGEARDGEILAVLGASGSGKSTLIDALANRIAKGSLKGNVTLNGE 157
Query: 108 PIDKAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKXXX--XXXXXXXXXXVKSLVKELGL 165
++ + +S YV Q D LFP+LTVEETLMF+A+ V++L+ +LGL
Sbjct: 158 VLNSKMQKAISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSLSKSKKSLRVQALIDQLGL 217
Query: 166 EHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKV 225
+ A +GD+ RGISGGERRRVSIG D+IHDP +L LDEPTSGLDSTSAL +I +LK
Sbjct: 218 RNAANTVIGDEGHRGISGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSALSVIKVLKR 277
Query: 226 MAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSVSLRMMGLQLPMHVN 285
+A++ G VI+++HQP +R++++ + +L L+ G + G+ +L G +P H N
Sbjct: 278 IAQS-GSMVIMTLHQPSYRLLRLLDRLLFLSRGQTVFSGSPAMLPRFFAEFGHPIPEHEN 336
Query: 286 VVEFAIESIDLIQEQRKIQQENQPRMMLPATQQQKKAEEGESRSG---KFTLQQLFQQSK 342
EFA+ DLI+E + + +Q+KAE S++G K + + K
Sbjct: 337 RTEFAL---DLIRELEGSAGGTRSLVEFNKGFRQRKAEP-RSQTGLSLKEAISASISKGK 392
Query: 343 VIDEEIMNV---GIE----IPRDFANSRFKETIILTHRFSKNIFRTKELFACRTIQMLIS 395
++ G IP FAN + E +L R N R ELF R +L++
Sbjct: 393 LVSGATTTTHSSGSSPVSTIPT-FANPFWVELAVLAKRSMTNSRRQPELFGIRLGAVLVT 451
Query: 396 GIVLGSIFHNVKDDLTGTEEKVGLFAFILTFLLSCTTEALPIFLQEREILMKETSCGSYR 455
G +L ++F + + G +E++G FAF ++ +ALP+FLQER I M+ET+ +YR
Sbjct: 452 GFILATMFWQLDNSPKGVQERLGCFAFAMSTTFYTCADALPVFLQERFIFMRETAYNAYR 511
Query: 456 VSSYAIANGLVYLPFLLILAILFSVPLYWIVGLNPNLMAFFHFXXXXXXXXYTANSVVVC 515
SSY +++ LV LP L+IL++ F+ +W VGL+ LM F + + +S V
Sbjct: 512 RSSYVLSHSLVALPSLIILSLAFAAITFWGVGLDGGLMGFLFYFLVILASFWAGSSFVTF 571
Query: 516 FSALVPNFIVGNSVISGVMGSFFLFSGYFISKHGIPDYWIFMHYISLFKYPFEQFLINEF 575
S +VP+ ++G +++ ++ F LFSG+FI++ IP YWI+ HYISL KYP+E L+NEF
Sbjct: 572 LSGVVPHVMLGYTIVVAILAYFLLFSGFFINRDRIPGYWIWFHYISLVKYPYEAVLLNEF 631
Query: 576 SDSDKC 581
D KC
Sbjct: 632 GDPTKC 637
|
|
| TAIR|locus:2097218 ABCG18 "ATP-binding cassette G18" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 924 (330.3 bits), Expect = 2.3e-97, Sum P(2) = 2.3e-97
Identities = 203/557 (36%), Positives = 330/557 (59%)
Query: 57 VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQS--GSTFVNGSPIDKAQF 114
V+ +LD ++ +A+ EILA++G SGAGKS+L++ LAG++ S G+ +NG + +++
Sbjct: 88 VKTLLDDITGEARDGEILAVLGGSGAGKSTLIDALAGRVAEDSLKGTVTLNGEKVLQSRL 147
Query: 115 RKV-SGYVTQRDTLFPLLTVEETLMFSAKXXXXXXX--XXXXXXVKSLVKELGLEHVAMA 171
KV S YV Q D LFP+LTV+ETLMF+++ V++L+ +LGL + A
Sbjct: 148 LKVISAYVMQDDLLFPMLTVKETLMFASEFRLPRSLPKSKKMERVETLIDQLGLRNAADT 207
Query: 172 RVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRG 231
+GD+ RG+SGGERRRVSIG D+IHDP +L LDEPTSGLDST+A ++ +LK +A++ G
Sbjct: 208 VIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTNAFMVVQVLKRIAQS-G 266
Query: 232 RTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSVSLRMMGLQLPMHVNVVEFAI 291
VI+SIHQP RI+ + + +++L++G + +G+ L G +P N+ EFA+
Sbjct: 267 SVVIMSIHQPSARIIGLLDRLIILSHGKSVFNGSPVSLPSFFSSFGRPIPEKENITEFAL 326
Query: 292 ESIDLIQEQRKIQQENQPRMMLPATQQQKKAEEGESRSGKFTLQQLFQQS----KVIDEE 347
D+I+E + + + QQ + ++S + +L++ S K++
Sbjct: 327 ---DVIRELEGSSEGTRDLVEFNEKWQQNQTARATTQS-RVSLKEAIAASVSRGKLVSGS 382
Query: 348 I-MN-VGIEIPRDFANSRFKETIILTHRFSKNIFRTKELFACRTIQMLISGIVLGSIFHN 405
N + +E +AN ET IL R+ KN RT EL R ++++G++L +++
Sbjct: 383 SGANPISMETVSSYANPPLAETFILAKRYIKNWIRTPELIGMRIGTVMVTGLLLATVYWR 442
Query: 406 VKDDLTGTEEKVGLFAFILTFLLSCTTEALPIFLQEREILMKETSCGSYRVSSYAIANGL 465
+ + G +E++G FAF ++ + C + +P+F+QER I ++ET+ +YR SSY I++ L
Sbjct: 443 LDNTPRGAQERMGFFAFGMSTMFYCCADNIPVFIQERYIFLRETTHNAYRTSSYVISHAL 502
Query: 466 VYLPFLLILAILFSVPLYWIVGLNPNLMAFFHFXXXXXXXXYTANSVVVCFSALVPNFIV 525
V LP LL L+I F+ +W VGL+ L +FF++ ++ +S+V S L+PN ++
Sbjct: 503 VSLPQLLALSIAFAATTFWTVGLSGGLESFFYYCLIIYAAFWSGSSIVTFISGLIPNVMM 562
Query: 526 GNSVISGVMGSFFLFSGYFISKHGIPDYWIFMHYISLFKYPFEQFLINEFSDSDKCLQYI 585
V + L G++I++ IP YWI+ HYISL KYP+E LINEF D +C ++
Sbjct: 563 SYMVTIAYLSYCLLLGGFYINRDRIPLYWIWFHYISLLKYPYEAVLINEFDDPSRC--FV 620
Query: 586 FGKCVVKGEDVLREAGY 602
G V G +L E +
Sbjct: 621 KGVQVFDGT-LLAEVSH 636
|
|
| TAIR|locus:2039682 ABCG1 "ATP-binding cassette G1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 892 (319.1 bits), Expect = 1.8e-95, Sum P(2) = 1.8e-95
Identities = 204/589 (34%), Positives = 328/589 (55%)
Query: 14 INYNVYTQKKETPFKIFTKNQLNDDHHAQEELSKLEEAADSDGVRRVLDGVSCKAKPWEI 73
+ YNV + K +F + + D AQ K + +L+ +S + + EI
Sbjct: 72 LTYNVSVRPKLDFRNLFPRRRTEDPEIAQTARPK---------TKTLLNNISGETRDGEI 122
Query: 74 LAIVGPSGAGKSSLLEILAGKLTPQS--GSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLL 131
+A++G SG+GKS+L++ LA ++ S G+ +NG + + +S YV Q D LFP+L
Sbjct: 123 MAVLGASGSGKSTLIDALANRIAKGSLKGTVKLNGETLQSRMLKVISAYVMQDDLLFPML 182
Query: 132 TVEETLMFSAKXXXXXXX--XXXXXXVKSLVKELGLEHVAMARVGDDRVRGISGGERRRV 189
TVEETLMF+A+ V++L+ +LG+ + A +GD+ RGISGGERRRV
Sbjct: 183 TVEETLMFAAEFRLPRSLPKSKKKLRVQALIDQLGIRNAAKTIIGDEGHRGISGGERRRV 242
Query: 190 SIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMF 249
SIG D+IHDP +L LDEPTSGLDSTSA ++ +LK +A++ G VI+SIHQP R++ +
Sbjct: 243 SIGIDIIHDPILLFLDEPTSGLDSTSAFMVVKVLKRIAQS-GSIVIMSIHQPSHRVLGLL 301
Query: 250 NSILMLANGSVLHHGTVDLLSVSLRMMGLQLPMHVNVVEFAIESIDLIQEQ----RKIQQ 305
+ ++ L+ G ++ G+ L G +P + N EFA++ I ++ R + +
Sbjct: 302 DRLIFLSRGHTVYSGSPASLPRFFTEFGSPIPENENRTEFALDLIRELEGSAGGTRGLIE 361
Query: 306 ENQP-RMMLPATQQQKKAEEGESRSGKFTLQQLFQQS----KVID--EEIMNVGIEIPRD 358
N+ + M + +Q S TL++ S K++ E + + G
Sbjct: 362 FNKKWQEMKKQSNRQPPLTPPSSPYPNLTLKEAIAASISRGKLVSGGESVAHGGATTNTT 421
Query: 359 ------FANSRFKETIILTHRFSKNIFRTKELFACRTIQMLISGIVLGSIFHNVKDDLTG 412
FAN + E L+ R N R ELF R ++I+G +L ++F + + G
Sbjct: 422 TLAVPAFANPMWIEIKTLSKRSMLNSRRQPELFGIRIASVVITGFILATVFWRLDNSPKG 481
Query: 413 TEEKVGLFAFILTFLLSCTTEALPIFLQEREILMKETSCGSYRVSSYAIANGLVYLPFLL 472
+E++G FAF ++ + +ALP+FLQER I M+ET+ +YR SSY +++ +V P L+
Sbjct: 482 VQERLGFFAFAMSTMFYTCADALPVFLQERYIFMRETAYNAYRRSSYVLSHAIVSFPSLI 541
Query: 473 ILAILFSVPLYWIVGLNPNLMAFFHFXXXXXXXXYTANSVVVCFSALVPNFIVGNSVISG 532
L++ F+ YW VGL+ L + ++ +S V S +VP+ ++G +++
Sbjct: 542 FLSVAFAATTYWAVGLDGGLTGLLFYCLIILASFWSGSSFVTFLSGVVPSVMLGYTIVVA 601
Query: 533 VMGSFFLFSGYFISKHGIPDYWIFMHYISLFKYPFEQFLINEFSDSDKC 581
++ F LFSG+FI+++ IPDYWI+ HY+SL KYP+E L NEFSD+ KC
Sbjct: 602 ILAYFLLFSGFFINRNRIPDYWIWFHYMSLVKYPYEAVLQNEFSDATKC 650
|
|
| TAIR|locus:2049806 ABCG2 "ATP-binding cassette G2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 899 (321.5 bits), Expect = 3.8e-95, Sum P(2) = 3.8e-95
Identities = 197/537 (36%), Positives = 315/537 (58%)
Query: 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQS--GSTFVNGSPIDKAQFRKV 117
+L+G+S +A+ E++A++G SG+GKS+L++ LA ++ S GS +NG ++ + + +
Sbjct: 133 LLNGISGEAREGEMMAVLGASGSGKSTLIDALANRIAKDSLRGSITLNGEVLESSMQKVI 192
Query: 118 SGYVTQRDTLFPLLTVEETLMFSAKXXX--XXXXXXXXXXVKSLVKELGLEHVAMARVGD 175
S YV Q D LFP+LTVEETLMFSA+ V++L+ +LGL A +GD
Sbjct: 193 SAYVMQDDLLFPMLTVEETLMFSAEFRLPRSLSKKKKKARVQALIDQLGLRSAAKTVIGD 252
Query: 176 DRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVI 235
+ RG+SGGERRRVSIG D+IHDP +L LDEPTSGLDSTSA +I +L+ +A++ G VI
Sbjct: 253 EGHRGVSGGERRRVSIGNDIIHDPIILFLDEPTSGLDSTSAYMVIKVLQRIAQS-GSIVI 311
Query: 236 LSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSVSLRMMGLQLPMHVNVVEFAIESID 295
+SIHQP +RI+ + + ++ L+ G+ ++ G+ L +P + N EFA+ D
Sbjct: 312 MSIHQPSYRIMGLLDQLIFLSKGNTVYSGSPTHLPQFFSEFKHPIPENENKTEFAL---D 368
Query: 296 LIQEQRKIQQENQPRMMLPATQQQKKAEEGESRSGKFT----LQQLFQQS----KVIDEE 347
LI+E + +P + + K+A + + + T L++ S K++
Sbjct: 369 LIRELEYSTEGTKPLVEFHKQWRAKQAPSYNNNNKRNTNVSSLKEAITASISRGKLVSGA 428
Query: 348 IMNVGIEI-P--RDFANSRFKETIILTHRFSKNIFRTKELFACRTIQMLISGIVLGSIFH 404
N + P + FAN + E I++ R N R EL R ++++GI+L ++F
Sbjct: 429 TNNNSSNLTPSFQTFANPFWIEMIVIGKRAILNSRRQPELLGMRLGAVMVTGIILATMFT 488
Query: 405 NVKDDLTGTEEKVGLFAFILTFLLSCTTEALPIFLQEREILMKETSCGSYRVSSYAIANG 464
N+ + G +E++G FAF ++ EA+P+FLQER I M+ET+ +YR SSY ++
Sbjct: 489 NLDNSPKGAQERLGFFAFAMSTTFYTCAEAIPVFLQERYIFMRETAYNAYRRSSYVLSQS 548
Query: 465 LVYLPFLLILAILFSVPLYWIVGLNPNLMAFFHFXXXXXXXXYTANSVVVCFSALVPNFI 524
++ +P L++L+ F+ +W VGL+ FF F + +S V S ++PN +
Sbjct: 549 IISIPALIVLSASFAATTFWAVGLDGGANGFFFFYFTILASFWAGSSFVTFLSGVIPNVM 608
Query: 525 VGNSVISGVMGSFFLFSGYFISKHGIPDYWIFMHYISLFKYPFEQFLINEFSDSDKC 581
+G +V+ ++ F LFSG+FIS+ IP YW++ HYISL KYP+E L NEF + +C
Sbjct: 609 LGFTVVVAILAYFLLFSGFFISRDRIPVYWLWFHYISLVKYPYEGVLQNEFQNPTRC 665
|
|
| TAIR|locus:2097208 ABCG17 "ATP-binding cassette G17" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 902 (322.6 bits), Expect = 9.9e-95, Sum P(2) = 9.9e-95
Identities = 206/568 (36%), Positives = 321/568 (56%)
Query: 57 VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQS--GSTFVNGSPIDKAQF 114
++ +L+G++ +AK EILAI+G SGAGKS+L++ LAG++ S G+ +NG +
Sbjct: 48 IKTLLNGITGEAKEGEILAILGASGAGKSTLIDALAGQIAEGSLKGTVTLNGEALQSRLL 107
Query: 115 RKVSGYVTQRDTLFPLLTVEETLMFSAKXXX--XXXXXXXXXXVKSLVKELGLEHVAMAR 172
R +S YV Q D LFP+LTVEETLMF+A+ V++L+ +LGL V
Sbjct: 108 RVISAYVMQEDLLFPMLTVEETLMFAAEFRLPRSLSKSKKRNRVETLIDQLGLTTVKNTV 167
Query: 173 VGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGR 232
+GD+ RG+SGGERRRVSIG D+IHDP VL LDEPTSGLDSTSA ++ +LK +A + G
Sbjct: 168 IGDEGHRGVSGGERRRVSIGTDIIHDPIVLFLDEPTSGLDSTSAFMVVQVLKKIARS-GS 226
Query: 233 TVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSVSLRMMGLQLPMHVNVVEFAIE 292
VI+SIHQP RI++ + +++L++G ++ + L + G +P N+ EF
Sbjct: 227 IVIMSIHQPSGRIMEFLDRVIVLSSGQIVFSDSPATLPLFFSEFGSPIPEKENIAEF--- 283
Query: 293 SIDLIQEQRKIQQENQPRMMLPATQQQKKAEEG-ESRSGKFTLQQLFQQSKVIDEEIMNV 351
++DLI++ + + + Q +K E +L + S + +
Sbjct: 284 TLDLIKDLEGSPEGTRGLVEFNRNWQHRKLRVSQEPHHNSSSLGEAINASISRGKLVSTS 343
Query: 352 GIEIPRDFANSRFKETIILTHRFSKNIFRTKELFACRTIQMLISGIVLGSIFHNVKDDLT 411
IP + N + ET+IL R+ N RT EL R ++++G +L +++ V D
Sbjct: 344 YRSIP-SYVNPWWVETVILAKRYMINWTRTPELIGTRVFIVMMTGFLLATVYWKVDDSPR 402
Query: 412 GTEEKVGLFAFIL-TFLLSCTTEALPIFLQEREILMKETSCGSYRVSSYAIANGLVYLPF 470
G +E++ F+F + T SC + LP F+QER I ++ET+ +YR SSY I++ LV LP
Sbjct: 403 GVQERLSFFSFAMATMFYSCA-DGLPAFIQERYIFLRETAHNAYRRSSYVISHSLVTLPH 461
Query: 471 LLILAILFSVPLYWIVGLNPNLMAFFHFXXXXXXXXYTANSVVVCFSALVPNFIVGNSVI 530
L L+I F+ +W VGLN L F ++ ++ S V S ++PN ++ V
Sbjct: 462 LFALSIGFAATTFWFVGLNGGLAGFIYYLMIIFASFWSGCSFVTFVSGVIPNVMMSYMVT 521
Query: 531 SGVMGSFFLFSGYFISKHGIPDYWIFMHYISLFKYPFEQFLINEFSDSDKCLQYIFGKCV 590
G + LFSG+++++ I YWI++HYISL KYP+E L NEF D +C ++ G V
Sbjct: 522 FGYLSYCLLFSGFYVNRDRIHLYWIWIHYISLLKYPYEAVLHNEFDDPSRC--FVRGNQV 579
Query: 591 VKGEDVLREAGYEEESSWRNLVIMVGFI 618
++ + E G E + + L M G++
Sbjct: 580 F--DNTIME-GVSETTKAKLLETMSGYL 604
|
|
| TAIR|locus:2083946 ABCG20 "ATP-binding cassette G20" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 889 (318.0 bits), Expect = 2.1e-94, Sum P(2) = 2.1e-94
Identities = 199/531 (37%), Positives = 313/531 (58%)
Query: 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQS--GSTFVNGSPIDKAQFRKV 117
+L+G+S +A+ E++A++G SG+GKS+L++ LA +++ +S G +NG ++ + + +
Sbjct: 126 LLNGISGEAREGEMMAVLGASGSGKSTLIDALANRISKESLRGDITLNGEVLESSLHKVI 185
Query: 118 SGYVTQRDTLFPLLTVEETLMFSAKXX--XXXXXXXXXXXVKSLVKELGLEHVAMARVGD 175
S YV Q D LFP+LTVEETLMFSA+ V++L+ +LGL + A +GD
Sbjct: 186 SAYVMQDDLLFPMLTVEETLMFSAEFRLPSSLSKKKKKARVQALIDQLGLRNAAKTVIGD 245
Query: 176 DRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVI 235
+ RG+SGGERRRVSIG D+IHDP +L LDEPTSGLDSTSA ++ +L+ +A++ G VI
Sbjct: 246 EGHRGVSGGERRRVSIGTDIIHDPIILFLDEPTSGLDSTSAYMVVKVLQRIAQS-GSIVI 304
Query: 236 LSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSVSLRMMGLQLPMHVNVVEFAIESID 295
+SIHQP +RI+ + + ++ L+ G+ ++ G+ L G +P + N EFA+ D
Sbjct: 305 MSIHQPSYRILGLLDKLIFLSRGNTVYSGSPTHLPQFFSEFGHPIPENENKPEFAL---D 361
Query: 296 LIQEQRKIQQENQPRMMLPATQQQKKAEEGESRSGKFTLQQLFQQ-SKVIDEEIMNVGIE 354
LI+E ++ + L +Q +A++ S+S + T L S I + G
Sbjct: 362 LIRE---LEDSPEGTKSLVEFHKQWRAKQTSSQSRRNTNVSLKDAISASISRGKLVSGAT 418
Query: 355 IPRD----FANSRFKETIILTHRFSKNIFRTKELFACRTIQMLISGIVLGSIFHNVKDDL 410
R FAN + E +++ R N R ELF R +L++G++L +IF + +
Sbjct: 419 NLRSSFQTFANPFWTEMLVIGKRSILNSRRQPELFGIRLGAVLVTGMILATIFWKLDNSP 478
Query: 411 TGTEEKVGLFAFILTFLLSCTTEALPIFLQEREILMKETSCGSYRVSSYAIANGLVYLPF 470
G +E++G FAF ++ EA+P+FLQER I M+ET+ +YR SSY +A+ ++ +P
Sbjct: 479 RGIQERLGFFAFAMSTTFYTCAEAIPVFLQERYIFMRETAYNAYRRSSYVLAHTIISIPA 538
Query: 471 LLILAILFSVPLYWIVGLNPNLMAFFHFXXXXXXXXYTANSVVVCFSALVPNFIVGNSVI 530
L+IL+ F+ + VGL F F + +S V S +V + ++G +V+
Sbjct: 539 LIILSAAFAASTFSAVGLAGGSEGFLFFFFTILTAFWAGSSFVTFLSGVVSHVMIGFTVV 598
Query: 531 SGVMGSFFLFSGYFISKHGIPDYWIFMHYISLFKYPFEQFLINEFSDSDKC 581
++ F LFSG+FIS+ IP YWI+ HY+SL KYP+E L NEF D KC
Sbjct: 599 VAILAYFLLFSGFFISRDRIPLYWIWFHYLSLVKYPYEGVLQNEFEDPTKC 649
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q4GZT4 | ABCG2_BOVIN | No assigned EC number | 0.3011 | 0.8771 | 0.8610 | yes | no |
| Q9UNQ0 | ABCG2_HUMAN | No assigned EC number | 0.3065 | 0.8818 | 0.8656 | yes | no |
| Q7TMS5 | ABCG2_MOUSE | No assigned EC number | 0.3080 | 0.8709 | 0.8523 | yes | no |
| Q5MB13 | ABCG2_MACMU | No assigned EC number | 0.3025 | 0.8833 | 0.8685 | yes | no |
| Q80W57 | ABCG2_RAT | No assigned EC number | 0.3113 | 0.8709 | 0.8523 | yes | no |
| Q9SIT6 | AB5G_ARATH | No assigned EC number | 0.7276 | 0.9953 | 0.9861 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 643 | |||
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 1e-131 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 1e-73 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 3e-67 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 4e-66 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 5e-61 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 1e-59 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 2e-50 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 9e-45 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 1e-43 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 4e-43 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 5e-43 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 3e-42 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 6e-42 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 6e-42 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 8e-41 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 1e-39 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 1e-39 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 2e-38 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 3e-38 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 4e-38 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 4e-36 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 4e-36 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 7e-36 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 1e-35 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 2e-35 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 2e-35 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 5e-35 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 2e-34 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 2e-34 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 3e-34 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 8e-34 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 1e-33 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 1e-33 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 2e-33 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 3e-33 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 3e-33 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 7e-33 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 1e-32 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 1e-32 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 3e-32 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 4e-32 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 5e-32 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 1e-31 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 2e-31 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 4e-31 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 4e-31 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 6e-31 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 6e-31 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 9e-31 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 9e-31 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 9e-31 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 2e-30 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-30 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 3e-30 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 3e-30 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 3e-30 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 4e-30 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 4e-30 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 9e-30 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 1e-29 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 2e-29 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 3e-29 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 3e-29 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 6e-29 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 8e-29 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 1e-28 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 2e-28 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 3e-28 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 3e-28 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 5e-28 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 5e-28 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 6e-28 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 8e-28 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 8e-28 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 9e-28 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 1e-27 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 1e-27 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 2e-27 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 2e-27 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 2e-27 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 3e-27 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 4e-27 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 4e-27 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 7e-27 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 1e-26 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 1e-26 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 2e-26 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 3e-26 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 5e-26 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 6e-26 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 6e-26 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 7e-26 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 7e-26 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 3e-25 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 5e-25 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 5e-25 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 8e-25 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 9e-25 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 1e-24 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 1e-24 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 1e-24 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 2e-24 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 3e-24 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 4e-24 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 4e-24 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 1e-23 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 2e-23 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 2e-23 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 2e-23 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 2e-23 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 3e-23 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 3e-23 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 4e-23 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 5e-23 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 6e-23 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 8e-23 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 1e-22 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 1e-22 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 2e-22 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 2e-22 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 2e-22 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 3e-22 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 3e-22 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 4e-22 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 5e-22 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 5e-22 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 7e-22 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 1e-21 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 1e-21 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 1e-21 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 1e-21 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 1e-21 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 2e-21 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 2e-21 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 3e-21 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 3e-21 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 3e-21 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 4e-21 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 5e-21 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 5e-21 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 7e-21 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 7e-21 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 8e-21 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 9e-21 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 1e-20 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 1e-20 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 2e-20 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 2e-20 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 2e-20 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 2e-20 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 3e-20 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 3e-20 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 3e-20 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 4e-20 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 4e-20 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 5e-20 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 5e-20 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 5e-20 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 6e-20 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 6e-20 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 6e-20 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 9e-20 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 1e-19 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 1e-19 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 1e-19 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 2e-19 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 2e-19 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 3e-19 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 4e-19 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 4e-19 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 4e-19 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 5e-19 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 6e-19 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 7e-19 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 8e-19 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 1e-18 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-18 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 3e-18 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 3e-18 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 3e-18 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 4e-18 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 5e-18 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 6e-18 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 7e-18 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 8e-18 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 9e-18 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 1e-17 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 2e-17 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 2e-17 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 3e-17 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 3e-17 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 4e-17 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 4e-17 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 4e-17 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 4e-17 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 5e-17 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 9e-17 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 1e-16 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 1e-16 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 1e-16 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 2e-16 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 2e-16 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 2e-16 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 2e-16 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 2e-16 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 2e-16 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 2e-16 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 2e-16 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 3e-16 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 4e-16 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 4e-16 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 4e-16 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 5e-16 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 5e-16 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 5e-16 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 5e-16 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 7e-16 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 7e-16 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 8e-16 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 1e-15 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 1e-15 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 1e-15 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 1e-15 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 3e-15 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 4e-15 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 4e-15 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 4e-15 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 5e-15 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 6e-15 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 7e-15 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 8e-15 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 1e-14 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 1e-14 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 1e-14 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 2e-14 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 4e-14 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 4e-14 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 4e-14 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 4e-14 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 6e-14 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 7e-14 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 8e-14 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 1e-13 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 2e-13 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 2e-13 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 2e-13 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 2e-13 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 2e-13 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 3e-13 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 3e-13 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 3e-13 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 4e-13 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 4e-13 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 8e-13 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 9e-13 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 1e-12 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 1e-12 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 1e-12 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 1e-12 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 2e-12 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 2e-12 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 2e-12 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 2e-12 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 4e-12 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 5e-12 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 5e-12 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 6e-12 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 6e-12 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 9e-12 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 1e-11 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 1e-11 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 1e-11 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 1e-11 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 1e-11 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 1e-11 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 1e-11 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 1e-11 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 2e-11 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 2e-11 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 2e-11 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 2e-11 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 3e-11 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 3e-11 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 3e-11 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 3e-11 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 4e-11 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 4e-11 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 5e-11 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 6e-11 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 7e-11 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 1e-10 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 2e-10 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 2e-10 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 2e-10 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 2e-10 | |
| PRK11022 | 326 | PRK11022, dppD, dipeptide transporter ATP-binding | 2e-10 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 3e-10 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 4e-10 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 4e-10 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 4e-10 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 6e-10 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 7e-10 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 1e-09 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 1e-09 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 1e-09 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 2e-09 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 3e-09 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 3e-09 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 3e-09 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 4e-09 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 4e-09 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 5e-09 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 5e-09 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 6e-09 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 7e-09 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 7e-09 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 8e-09 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 1e-08 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 1e-08 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 2e-08 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 2e-08 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 3e-08 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 3e-08 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 5e-08 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 5e-08 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 6e-08 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 8e-08 | |
| PRK13541 | 195 | PRK13541, PRK13541, cytochrome c biogenesis protei | 9e-08 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 1e-07 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 2e-07 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 2e-07 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 3e-07 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 3e-07 | |
| cd03270 | 226 | cd03270, ABC_UvrA_I, ATP-binding cassette domain I | 3e-07 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 3e-07 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 3e-07 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 4e-07 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 6e-07 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 6e-07 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 6e-07 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 7e-07 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 7e-07 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 8e-07 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 9e-07 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 9e-07 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 1e-06 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 2e-06 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 2e-06 | |
| COG4170 | 330 | COG4170, SapD, ABC-type antimicrobial peptide tran | 2e-06 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 3e-06 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 4e-06 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 5e-06 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 1e-05 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 2e-05 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 2e-05 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 6e-05 | |
| PRK13546 | 264 | PRK13546, PRK13546, teichoic acids export protein | 2e-04 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 2e-04 | |
| cd01854 | 211 | cd01854, YjeQ_EngC, Ribosomal interacting GTPase Y | 2e-04 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 2e-04 | |
| cd03240 | 204 | cd03240, ABC_Rad50, ATP-binding cassette domain of | 2e-04 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 3e-04 | |
| pfam12698 | 278 | pfam12698, ABC2_membrane_3, ABC-2 family transport | 0.001 | |
| PRK13545 | 549 | PRK13545, tagH, teichoic acids export protein ATP- | 0.001 | |
| PRK15093 | 330 | PRK15093, PRK15093, antimicrobial peptide ABC tran | 0.001 | |
| PRK00635 | 1809 | PRK00635, PRK00635, excinuclease ABC subunit A; Pr | 0.002 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 0.003 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 0.004 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 0.004 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 399 bits (1028), Expect = e-131
Identities = 187/590 (31%), Positives = 294/590 (49%), Gaps = 26/590 (4%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTP---QSGSTFVNGSPIDKA 112
+ +L VS AKP E+LA++G SGAGK++L+ LA + SGS +NG PID
Sbjct: 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAK 95
Query: 113 QFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRL--RLPQAQLRARVKSLVKELGLEHVAM 170
+ R +S YV Q D P LTV E LMF A LR+ R+ + + R RV +++ LGL A
Sbjct: 96 EMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCAN 155
Query: 171 ARVGD-DRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAET 229
R+G RV+G+SGGER+R++ +++ DP +L DEPTSGLDS A ++ +LK +A
Sbjct: 156 TRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLA-Q 214
Query: 230 RGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSVSLRMMGLQLPMHVNVVEF 289
+G+T+I +IHQP + ++F+ I+++A G V + G+ D +G P + N +F
Sbjct: 215 KGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADF 274
Query: 290 AIESIDLIQEQRKIQQENQPRMMLPATQQQK-KAEEGESRSGKFTLQQLFQQSKVIDEEI 348
++ + +I EN+ R + ++ G L V D E
Sbjct: 275 YVQVLAVIPGS-----ENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSEN 329
Query: 349 MNVGIEIPRDFANSRFKETIILTHRFSKNIFRTKELFACRTIQMLISGIVLGSIFHNVKD 408
M + S + + L R ++ R L R IQ +++ I++G I+
Sbjct: 330 ME-----GIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGL 384
Query: 409 DLTGTEEKVG-LFAFI--LTFLLSCTTEALPIFLQEREILMKETSCGSYRVSSYAIANGL 465
G + G LF F+ +TF + +F E + ++ET G YRVS+Y +A +
Sbjct: 385 TQKGVQNINGALFLFLTNMTFQNV--FPVINVFTAELPVFLRETRSGLYRVSAYFLAKTI 442
Query: 466 VYLPFLLILAILFSVPLYWIVGLNPNLMAFFHFLLLIWLILYTANSVVVCFSALVPNFIV 525
LP +IL LF+ YW++GL F FL L+ L+ A S S + +
Sbjct: 443 AELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSM 502
Query: 526 GNSVISGVMGSFFLFSGYFISKHGIPDYWIFMHYISLFKYPFEQFLINEFSDSDKC---L 582
+V + F LF G+FI+ IP Y+ ++ Y+S F+Y E LIN++SD D
Sbjct: 503 ALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTS 562
Query: 583 QYIFGKCVVKGEDVLREAGYEEESSWRNLVIMVGFILIYRFISYVILRFR 632
G C GE +L + + +L+ +V I +R ++Y LR R
Sbjct: 563 ANTTGPCPSSGEVILETLSFRNADLYLDLIGLVILIFFFRLLAYFALRIR 612
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 249 bits (636), Expect = 1e-73
Identities = 181/589 (30%), Positives = 305/589 (51%), Gaps = 30/589 (5%)
Query: 58 RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQS--GSTFVNGSPIDKAQFR 115
R +L+GV+ A P EILA++GPSG+GKS+LL LAG++ + G+ N K Q
Sbjct: 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK-QIL 139
Query: 116 KVSGYVTQRDTLFPLLTVEETLMFSAKLRL-RLPQAQLRARV-KSLVKELGLEHVAMARV 173
K +G+VTQ D L+P LTV ETL+F + LRL + Q + V +S++ ELGL +
Sbjct: 140 KRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTII 199
Query: 174 GDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRT 233
G+ +RGISGGER+RVSI +++ +P +LILDEPTSGLD+T+A +++ L +A+ +G+T
Sbjct: 200 GNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQ-KGKT 258
Query: 234 VILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSVSLRMMGLQLPMHVNVVEFAIES 293
++ S+HQP R+ +MF+S+L+L+ G L G +G +N +F ++
Sbjct: 259 IVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLDL 318
Query: 294 IDLIQEQRKIQQENQP--RMMLPA---TQQQKKAEEGESRSGKFTLQQLFQQSKVIDEEI 348
+ + + + + +P + L A T K + S F S E
Sbjct: 319 ANGVCQTDGVSEREKPNVKQSLVASYNTLLAPKVKAAIEMSHFPQANARFVGSASTKEHR 378
Query: 349 MNVGIEIPRDFANSRFKETIILTHRFSKNIFRTKELF-ACRTIQMLISGIVLGSIFHNVK 407
+ I I ++ F + IL R K R E F R Q++ + ++ G ++ +
Sbjct: 379 SSDRISI-----STWFNQFSILLQRSLKE--RKHESFNTLRVFQVIAAALLAGLMWWH-- 429
Query: 408 DDLTGTEEKVGLFAFILTFL-LSCTTEALPIFLQEREILMKETSCGSYRVSSYAIANGLV 466
D ++++GL FI F + + ++ +F QER I +KE + G Y +SSY +A +
Sbjct: 430 SDFRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVG 489
Query: 467 YLPFLLILAILFSVPLYWIVGLNPNLMAFFHFLLLIWLILYTANSVVVCFSALVPNFIVG 526
LP LIL +F YW+ GL P L AF LL++ + + + + A + +
Sbjct: 490 DLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKA 549
Query: 527 NSVISGVMGSFFLFSGYFISKHGIPDYWIFMHYISLFKYPFEQFLINEFSDSDKCLQYIF 586
+++++ M +F L G+++ H +P ++ YIS Y + + LIN K + +
Sbjct: 550 STIVTVTMLAFVLTGGFYV--HKLPSCMAWIKYISTTFYSY-RLLINVQYGEGKRISSLL 606
Query: 587 GKCVVKGEDVLREAGYEEE-----SSWRNLVIMVGFILIYRFISYVILR 630
G + G D EE+ S ++ +++ + YR ++Y+ LR
Sbjct: 607 GCSLPHGSDRASCKFVEEDVAGQISPATSVSVLIFMFVGYRLLAYLALR 655
|
Length = 659 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 219 bits (559), Expect = 3e-67
Identities = 93/210 (44%), Positives = 137/210 (65%), Gaps = 6/210 (2%)
Query: 58 RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQ---SGSTFVNGSPIDKAQF 114
R+L+ VS + +++AI+G SG+GK++LL+ ++G++ SG NG P QF
Sbjct: 20 ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQF 79
Query: 115 RKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVG 174
+K YV Q D L P LTV ETL ++A LRL + A K V+++ L +A+ R+G
Sbjct: 80 QKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSD--AIRKKRVEDVLLRDLALTRIG 137
Query: 175 DDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTV 234
+ V+GISGGERRRVSI ++ DPKVLILDEPTSGLDS +AL ++ L +A R R V
Sbjct: 138 GNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLA-RRNRIV 196
Query: 235 ILSIHQPGFRIVKMFNSILMLANGSVLHHG 264
IL+IHQP + ++F+ IL+L++G +++ G
Sbjct: 197 ILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 214 bits (548), Expect = 4e-66
Identities = 100/224 (44%), Positives = 138/224 (61%), Gaps = 38/224 (16%)
Query: 43 EELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQ--SG 100
L+ +++ S +++L VS KAKP E+ AI+GPSGAGKS+LL LAG+ T SG
Sbjct: 7 RNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSG 66
Query: 101 STFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLV 160
+NG P+DK FRK+ GYV Q D L P LTV ETLMF+AKL
Sbjct: 67 EVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKL----------------- 109
Query: 161 KELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQII 220
RG+SGGER+RVSI +++ +P +L LDEPTSGLDS+SALQ++
Sbjct: 110 ------------------RGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVM 151
Query: 221 DMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHG 264
+L+ +A+T GRT+I SIHQP I ++F+ +L+L+ G V++ G
Sbjct: 152 SLLRRLADT-GRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 220 bits (563), Expect = 5e-61
Identities = 144/624 (23%), Positives = 258/624 (41%), Gaps = 60/624 (9%)
Query: 58 RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKL----TPQSGSTFVNGSPID--K 111
+L + KP E+ ++G G+G S+LL+ +A G +G + K
Sbjct: 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK 133
Query: 112 AQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKE--------- 162
+R Y + D FP LTV ETL F+A R + PQ R + +E
Sbjct: 134 KHYRGDVVYNAETDVHFPHLTVGETLDFAA--RCKTPQN----RPDGVSREEYAKHIADV 187
Query: 163 ----LGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQ 218
GL H +VG+D VRG+SGGER+RVSI + K+ D T GLDS +AL+
Sbjct: 188 YMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALE 247
Query: 219 IIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSVSLRMMGL 278
I LK A T +++I+Q ++F+ +++L G ++ G D MG
Sbjct: 248 FIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGF 307
Query: 279 QLPMHVNVVEFAIESIDLIQEQRKIQQENQ-PRMMLPATQQQKKAEEG----ESRSGKFT 333
+ P +F + Q K E + PR + + E +
Sbjct: 308 KCPDRQTTADFLTSLTSPAERQIKPGYEKKVPRTPQEFETYWRNSPEYAQLMKEIDEYLD 367
Query: 334 LQQLFQQSKVIDEEIMNVGIEIPRDFAN---SRFKETIILTHRFSKNIFRTKELFACRTI 390
+ E + + R + S + R +
Sbjct: 368 RCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVF 427
Query: 391 QMLISGIVLGSIFHNVKDDLTGTEEKVG-LFAFILTFLLSCTTEALPIFLQEREILMKET 449
+I ++L S+F+N+ + + + G LF IL S E ++ + R I+ K
Sbjct: 428 GNIIMALILSSVFYNLPKNTSDFYSRGGALFFAILFNAFSSLLEIASMY-EARPIVEKHR 486
Query: 450 SCGSYRVSSYAIANGLVYLPFLLILAILFSVPLYWIVGLNPNLMAFFHFLLLIWLILYTA 509
Y S+ AIA+ + +PF +I +++F++ LY++V FF +LL++++
Sbjct: 487 KYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAM 546
Query: 510 NSVVVCFSALVPNFIVGNSVISGVMGSFFLFSGYFISKHGIPDYWIFMHYISLFKYPFEQ 569
+ + A+ + + ++ + +++G+ I + + + +++Y++ Y FE
Sbjct: 547 SHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFES 606
Query: 570 FLINEFSDSD-KCLQYI----------------------FGKCVVKGEDVLREA-GYEEE 605
++NEF +C QY+ G+ V G+D L+ + Y
Sbjct: 607 LMVNEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYYNS 666
Query: 606 SSWRNLVIMVGFILIYRFISYVIL 629
WRN I++GF + + F Y++L
Sbjct: 667 HKWRNFGIIIGFTVFF-FFVYILL 689
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 201 bits (513), Expect = 1e-59
Identities = 87/222 (39%), Positives = 136/222 (61%), Gaps = 9/222 (4%)
Query: 58 RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK--AQFR 115
+ LDGVS + +P EI ++GP+GAGK++LL+ILAG L P SG V G + K A+ R
Sbjct: 18 KTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVR 77
Query: 116 KVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGD 175
+ GYV Q +L+P LTV E L F A+L L + + R++ L++ GLE A +
Sbjct: 78 RRIGYVPQEPSLYPELTVRENLEFFARLY-GLSKEEAEERIEELLELFGLEDKA-----N 131
Query: 176 DRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVI 235
+VR +SGG ++R+SI ++HDP++LILDEPTSGLD S +I ++L+ +A+ G T++
Sbjct: 132 KKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTIL 191
Query: 236 LSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSVSLRMMG 277
LS H ++ + +++L +G ++ GT + L G
Sbjct: 192 LSTHILE-EAEELCDRVIILNDGKIIAEGTPEELKEKFGGKG 232
|
Length = 293 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 189 bits (481), Expect = 2e-50
Identities = 137/557 (24%), Positives = 247/557 (44%), Gaps = 54/557 (9%)
Query: 54 SDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTP---QSGSTFVNGSPID 110
R +L+ V KP + A++G SGAGK++LL +LA ++T G VNG P+D
Sbjct: 772 KKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD 831
Query: 111 KAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRL--RLPQAQLRARVKSLVKELGLEHV 168
+ F++ GYV Q+D P TV E+L FSA LR + +++ V+ ++K L +E
Sbjct: 832 SS-FQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESY 890
Query: 169 AMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLI-LDEPTSGLDSTSALQIIDMLKVMA 227
A A VG G++ +R+R++IG +++ PK+L+ LDEPTSGLDS +A I +++ +A
Sbjct: 891 ADAVVGVPGE-GLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLA 949
Query: 228 ETRGRTVILSIHQPGFRIVKMFNSILMLANGS-VLHHGTVDLLSVSLRMMGL-------Q 279
+ G+ ++ +IHQP + + F+ +L+L G ++ G DL S ++ +
Sbjct: 950 DH-GQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFG--DLGENSHTIINYFEKHGAPK 1006
Query: 280 LPMHVNVVEFAIESIDLIQEQRKIQQENQPRMMLPATQQQKKAEEGESRSGKFTLQQLFQ 339
P N E+ +E I P + E S ++ Q +
Sbjct: 1007 CPEDANPAEWMLEVIG----------------AAPGAHANQDYHEVWRNSSEY--QAVKN 1048
Query: 340 QSKVIDEEIMNVG----IEIPRDFANSRFKETIILTHRFSKNIFRTKELFACRTIQMLIS 395
+ ++ E+ + +A S + + ++ R + +RT + + + +
Sbjct: 1049 ELDRLEAELSKAEDDNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFA 1108
Query: 396 GIVLGSIFHNVKDDLTGTEEKVG-LFAFILTFLLSCTTEALPIFLQEREIL-MKETSCGS 453
+ +G F V L G + ++ +F + + LP F+ +R++ ++E +
Sbjct: 1109 ALFIGFTFFKVGTSLQGLQNQMFAVFMATV-LFNPLIQQYLPPFVAQRDLYEVRERPSRT 1167
Query: 454 YRVSSYAIANGLVYLPFLLILAILFSVPLYWIVGLNPNL--------MAFFHFLLLIWLI 505
+ ++ A V +P+ L+ +F Y+ VG N +LL
Sbjct: 1168 FSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFF 1227
Query: 506 LYTANSVVVCFSALVPNFIVGNSVISGVMGSFFLFSGYFISKHGIPDYWIFMHYISLFKY 565
LY + + S PN + S + F G +P +WIFM+ S F Y
Sbjct: 1228 LYFSTLGQMVIS-FNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTY 1286
Query: 566 PFEQFLINEFSDS-DKC 581
+ L +D C
Sbjct: 1287 LVQALLSTGLADVPVTC 1303
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 157 bits (400), Expect = 9e-45
Identities = 74/203 (36%), Positives = 114/203 (56%), Gaps = 39/203 (19%)
Query: 58 RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQ--SGSTFVNGSPIDKAQFR 115
R++L+ +S KP + A++G SGAGK++LL++LAG+ T +G +NG P+DK F+
Sbjct: 20 RQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKN-FQ 78
Query: 116 KVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGD 175
+ +GYV Q+D P LTV E L FSA L
Sbjct: 79 RSTGYVEQQDVHSPNLTVREALRFSALL-------------------------------- 106
Query: 176 DRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVI 235
RG+S +R+R++IG ++ P +L LDEPTSGLDS +A I+ LK +A++ G+ ++
Sbjct: 107 ---RGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADS-GQAIL 162
Query: 236 LSIHQPGFRIVKMFNSILMLANG 258
+IHQP I + F+ +L+L G
Sbjct: 163 CTIHQPSASIFEKFDRLLLLKRG 185
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 155 bits (395), Expect = 1e-43
Identities = 68/209 (32%), Positives = 118/209 (56%), Gaps = 14/209 (6%)
Query: 59 RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK------A 112
L V+ + + E +AIVGPSG+GKS+LL +L G P SG +NG + K A
Sbjct: 19 EALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELA 78
Query: 113 QFRKVS-GYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMA 171
+ R+ G+V Q L P LTV E + + + + R + L++ LGLE
Sbjct: 79 KLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKR-AAEELLEVLGLED---- 133
Query: 172 RVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRG 231
R+ + +SGG+++RV+I +I++PK+++ DEPT LDS +A +++++L+ + + RG
Sbjct: 134 RLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERG 193
Query: 232 RTVILSIHQPGFRIVKMFNSILMLANGSV 260
+T+I+ H P + K + ++ L +G +
Sbjct: 194 KTIIMVTHDP--ELAKYADRVIELKDGKI 220
|
Length = 226 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 154 bits (391), Expect = 4e-43
Identities = 68/206 (33%), Positives = 113/206 (54%), Gaps = 15/206 (7%)
Query: 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI------DKAQ 113
L GVS + E +AIVGPSG+GKS+LL IL G P SG V+G+ I + A
Sbjct: 19 ALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAA 78
Query: 114 FRKVS-GYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMAR 172
FR+ G+V Q L P LT E + L +P+ + R R + L++ +GL
Sbjct: 79 FRRRHIGFVFQSFNLLPDLTALENVELPLLLA-GVPKKERRERAEELLERVGLGDRL--- 134
Query: 173 VGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGR 232
+ +SGG+++RV+I + +DPK+++ DEPT LDS + +++++L+ + + G
Sbjct: 135 --NHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGT 192
Query: 233 TVILSIHQPGFRIVKMFNSILMLANG 258
T+++ H P + + + I+ L +G
Sbjct: 193 TIVVVTHDP--ELAEYADRIIELRDG 216
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 153 bits (390), Expect = 5e-43
Identities = 78/217 (35%), Positives = 119/217 (54%), Gaps = 17/217 (7%)
Query: 54 SDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI--DK 111
G + +D +S EI ++G +GAGK++ L++L G+L P SG+ ++NG I D+
Sbjct: 11 KKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR 70
Query: 112 AQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMA 171
R+ GY Q D LF LTV E L F A+L+ LP+++++ V+ L++ LGL A
Sbjct: 71 KAARQSLGYCPQFDALFDELTVREHLRFYARLK-GLPKSEIKEEVELLLRVLGLTDKA-- 127
Query: 172 RVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRG 231
+ R R +SGG +R++S+ +I P VL+LDEPTSGLD S I D++ +G
Sbjct: 128 ---NKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLIL--EVRKG 182
Query: 232 RTVILSIHQP------GFRIVKMFNSILMLANGSVLH 262
R++IL+ H RI M + L GS
Sbjct: 183 RSIILTTHSMDEAEALCDRIAIMSDGKLR-CIGSPQE 218
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 164 bits (416), Expect = 3e-42
Identities = 139/535 (25%), Positives = 257/535 (48%), Gaps = 69/535 (12%)
Query: 59 RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQ--SGSTFVNGSPIDKAQFRK 116
++L V+ +P + A++G SGAGK++L+++LAG+ T G ++G P + F +
Sbjct: 894 QLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFAR 953
Query: 117 VSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKEL----GLEHVAMAR 172
+SGY Q D P +TV E+L++SA LRLP+ + V E+ L+++ A
Sbjct: 954 ISGYCEQNDIHSPQVTVRESLIYSA--FLRLPKEVSKEEKMMFVDEVMELVELDNLKDAI 1011
Query: 173 VGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGR 232
VG V G+S +R+R++I +++ +P ++ +DEPTSGLD+ +A ++ ++ +T GR
Sbjct: 1012 VGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GR 1070
Query: 233 TVILSIHQPGFRIVKMFNSI-LMLANGSVLHHGTVDLLSVSLRMMGLQLPMHVNVVEF-- 289
TV+ +IHQP I + F+ + LM G V++ G + S H ++E+
Sbjct: 1071 TVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNS------------H-KIIEYFE 1117
Query: 290 AIESIDLIQEQRKIQQENQPRMMLPATQQQKKAEEGESRSGKFTLQQLFQQSKVIDEEIM 349
AI + I+E + N ML + + + G + + L+Q++K + +E
Sbjct: 1118 AIPGVPKIKE-----KYNPATWMLEVSSLAAEVKLGIDFAEHYKSSSLYQRNKALVKE-- 1170
Query: 350 NVGIEIPRDFANSRFKETIILTHRFSKNI---------------FRTKELFACRTIQMLI 394
+ P A+ + T ++S++ +R+ + R L
Sbjct: 1171 ---LSTPPPGASDLYFAT-----QYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLA 1222
Query: 395 SGIVLGSIFHNV--KDDLTGTEEKV--GLFAFILTFLLSCTTEALPIFLQEREILMKETS 450
+ +++G+IF V K V ++A +L ++ + P+ ER + +E +
Sbjct: 1223 AALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERA 1282
Query: 451 CGSYRVSSYAIANGLVYLPFLLILAILFSVPLYWIVGLNPNLMAFFHFLLL-----IWLI 505
G Y YAIA + +P++LI +++ +Y +V FF F + ++
Sbjct: 1283 AGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFT 1342
Query: 506 LYTANSVVVCFSALVPNFIVGNSVISGVMGSFFLFSGYFISKHGIPDYWIFMHYI 560
Y +V +L PN V + G F LFSG+FI + IP +W++ ++I
Sbjct: 1343 YYGMMTV-----SLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYYWI 1392
|
Length = 1470 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 151 bits (385), Expect = 6e-42
Identities = 66/216 (30%), Positives = 122/216 (56%), Gaps = 15/216 (6%)
Query: 58 RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKV 117
R VL+ +S + EI A++GP+GAGKS+LL+ + G L P SG + G P+ K + R
Sbjct: 17 RPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLR 76
Query: 118 SGYVTQR---DTLFPLLTVEETLM---FSAKLRLRLPQAQLRARVKSLVKELGLEHVAMA 171
GYV Q+ D FP +TV++ ++ + K R + + +V ++ +G+E +
Sbjct: 77 IGYVPQKSSVDRSFP-ITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDR 135
Query: 172 RVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRG 231
++G+ +SGG+++RV + + +P +L+LDEP +G+D +I D+LK + + G
Sbjct: 136 QIGE-----LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ-EG 189
Query: 232 RTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVD 267
+TV++ H G ++ F+ ++ L N ++ G +
Sbjct: 190 KTVLMVTHDLGL-VMAYFDRVICL-NRHLIASGPPE 223
|
Length = 254 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 150 bits (381), Expect = 6e-42
Identities = 65/212 (30%), Positives = 108/212 (50%), Gaps = 5/212 (2%)
Query: 366 ETIILTHRFSKNIFRTKEL-FACRTIQMLISGIVLGSIFHNVKDDLTGTEEKVGLFAFIL 424
+ L R +R L R IQ L+ +V G++F N+ L G + GL F +
Sbjct: 2 QLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNLDTSLGGLN-RPGLLFFSI 60
Query: 425 TFL-LSCTTEALPIFLQEREILMKETSCGSYRVSSYAIANGLVYLPFLLILAILFSVPLY 483
F S T P+F++ER +L +E + Y S+Y +A LV LP L+ AI+F + +Y
Sbjct: 61 LFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFLLIVY 120
Query: 484 WIVGLNPNLMAFFHFLLLIWLILYTANSVVVCFSALVPNFIVGNSVISGVMGSFFLFSGY 543
++VGL + FF FLL++ L A+ + + +AL P+F + + ++ L SG+
Sbjct: 121 FMVGLPVS--RFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLLLSGF 178
Query: 544 FISKHGIPDYWIFMHYISLFKYPFEQFLINEF 575
FI +P + +++Y++ Y E NEF
Sbjct: 179 FIPVDSMPGWLQWIYYLNPLTYAIEALRANEF 210
|
Length = 210 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 160 bits (405), Expect = 8e-41
Identities = 138/566 (24%), Positives = 263/566 (46%), Gaps = 68/566 (12%)
Query: 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQ---SGSTFVNGSPIDKAQFRK 116
+L S KP + ++GP +GK++LL LAGKL P SG NG +++ RK
Sbjct: 180 ILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRK 239
Query: 117 VSGYVTQRDTLFPLLTVEETLMFSAK-------------LRLR------LPQAQLRARVK 157
S Y++Q D ++TV+ETL FSA+ L R P+A++ +K
Sbjct: 240 TSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMK 299
Query: 158 SL--------------VKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLI 203
+ +K LGL+ VGD+ +RGISGG+++RV+ G ++ K L
Sbjct: 300 ATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLF 359
Query: 204 LDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHH 263
+DE ++GLDS++ QI+ L+ + TV++S+ QP +F+ I++L+ G +++
Sbjct: 360 MDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQ 419
Query: 264 GTVDLLSVSLRMMGLQLPMHVNVVEFAIESIDLIQEQRKIQQENQPRMMLPAT---QQQK 320
G D + G + P +F E +++ N+P + + ++ K
Sbjct: 420 GPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFK 479
Query: 321 KAEEGESRSGKFTLQQLFQQSKVIDEEIMNVGIEIPR-DFANSRFKETIILTHRFSKNIF 379
G + ++ F +S+ ++ +P+ + + + + +L R N F
Sbjct: 480 SFHVGMQLENELSVP--FDKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKR---NAF 534
Query: 380 RTKELFACRTIQMLISGIVLGSIFHNVKDDLTGTEEKVGLFAFILTFL-----------L 428
++ +T+Q++I + ++F + T EE L+ L F L
Sbjct: 535 ----VYVFKTVQIIIVAAIASTVFLRTEMH-TRNEEDGALYIGALLFSMIINMFNGFAEL 589
Query: 429 SCTTEALPIFLQEREILMKETSCGSYRVSSYAIANGLVYLPFLLILAILFSVPLYWIVGL 488
+ + LP+F ++R++L + ++ + L+ +P +I ++++ V Y+ +G
Sbjct: 590 ALMIQRLPVFYKQRDLLF-------HPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGF 642
Query: 489 NPNLMAFFHFLLLIWLILYTANSVVVCFSALVPNFIVGNSVISGVMGSFFLFSGYFISKH 548
P FF LLL++LI A + +++ I+ N+ + V+ FL G+ + K
Sbjct: 643 APEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKG 702
Query: 549 GIPDYWIFMHYISLFKYPFEQFLINE 574
IP++W + +++S Y F +NE
Sbjct: 703 EIPNWWEWAYWVSPLSYGFNALAVNE 728
|
Length = 1470 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 144 bits (366), Expect = 1e-39
Identities = 72/209 (34%), Positives = 119/209 (56%), Gaps = 14/209 (6%)
Query: 55 DGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK--- 111
DG R LD +S K E + IVGP+G+GKS+LL +L G L P SG V+G + K
Sbjct: 11 DGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSL 70
Query: 112 AQFRKVSGYVTQ--RDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVA 169
+ R+ G V Q D F TVEE + F + L LP+ ++ RV+ ++ +GLE +
Sbjct: 71 KELRRKVGLVFQNPDDQFF-GPTVEEEVAFGLE-NLGLPEEEIEERVEEALELVGLEGLR 128
Query: 170 MARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAET 229
D +SGG+++RV+I + DP +L+LDEPT+GLD +++++LK +
Sbjct: 129 -----DRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKA- 182
Query: 230 RGRTVILSIHQPGFRIVKMFNSILMLANG 258
G+T+I+ H ++++ + +++L +G
Sbjct: 183 EGKTIIIVTHDLDL-LLELADRVIVLEDG 210
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 144 bits (367), Expect = 1e-39
Identities = 69/218 (31%), Positives = 115/218 (52%), Gaps = 12/218 (5%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNG------SPI 109
G R VL GV + EILAI+GPSG+GKS+LL ++ G L P SG ++G S
Sbjct: 11 GGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEA 70
Query: 110 DKAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVA 169
+ + R+ G + Q LF LTV E + F + RL + ++R V ++ +GL
Sbjct: 71 ELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAE 130
Query: 170 MARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAET 229
+ +SGG ++RV++ + DP++L+ DEPT+GLD ++ I D+++ + +
Sbjct: 131 DLYPAE-----LSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKE 185
Query: 230 RGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVD 267
G T I+ H + + I +L +G ++ GT +
Sbjct: 186 LGLTSIMVTHDLDT-AFAIADRIAVLYDGKIVAEGTPE 222
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 141 bits (358), Expect = 2e-38
Identities = 66/188 (35%), Positives = 102/188 (54%), Gaps = 8/188 (4%)
Query: 52 ADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK 111
G L+ +S + E +A+VGPSG GKS+LL I+AG P SG V+G P+
Sbjct: 11 GGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG 70
Query: 112 AQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMA 171
+ GYV Q+D L P LTV + + +L+ +P+A+ R R + L++ +GL
Sbjct: 71 PGPDR--GYVFQQDALLPWLTVLDNVALGLELQ-GVPKAEARERAEELLELVGLSGFE-- 125
Query: 172 RVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRG 231
+ +SGG R+RV++ + DP VL+LDEP S LD+ + Q+ + L + G
Sbjct: 126 ---NAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETG 182
Query: 232 RTVILSIH 239
+TV+L H
Sbjct: 183 KTVLLVTH 190
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 140 bits (354), Expect = 3e-38
Identities = 65/209 (31%), Positives = 103/209 (49%), Gaps = 34/209 (16%)
Query: 61 LDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQ---SGSTFVNGSPIDKA--QFR 115
L S KP E++ ++G G+G S+LL+ LA + G NG P + ++
Sbjct: 23 LKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYP 82
Query: 116 KVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGD 175
YV++ D FP LTV ETL F+ + + G+
Sbjct: 83 GEIIYVSEEDVHFPTLTVRETLDFALRCK-----------------------------GN 113
Query: 176 DRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVI 235
+ VRGISGGER+RVSI ++ VL D T GLDS++AL+I+ ++ MA+ T
Sbjct: 114 EFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTF 173
Query: 236 LSIHQPGFRIVKMFNSILMLANGSVLHHG 264
+S++Q I +F+ +L+L G +++G
Sbjct: 174 VSLYQASDEIYDLFDKVLVLYEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 140 bits (354), Expect = 4e-38
Identities = 72/213 (33%), Positives = 116/213 (54%), Gaps = 20/213 (9%)
Query: 58 RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI--DKAQFR 115
+R LDGVS P + ++GP+GAGK++L+ ILA P SG+ ++G + + R
Sbjct: 13 KRALDGVSLTLGP-GMYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLR 71
Query: 116 KVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGD 175
+ GY+ Q ++P TV E L + A L+ +P +++ARV + LE V +
Sbjct: 72 RRIGYLPQEFGVYPNFTVREFLDYIAWLK-GIPSKEVKARV-----DEVLELVNLGDRAK 125
Query: 176 DRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVI 235
++ +SGG RRRV I ++ DP +LI+DEPT+GLD ++ ++L + E R VI
Sbjct: 126 KKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGED--RIVI 183
Query: 236 LSIHQPGFRIVK----MFNSILMLANGSVLHHG 264
LS H IV+ + N + +L G ++ G
Sbjct: 184 LSTH-----IVEDVESLCNQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 134 bits (340), Expect = 4e-36
Identities = 70/208 (33%), Positives = 116/208 (55%), Gaps = 10/208 (4%)
Query: 59 RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK--AQFRK 116
R LD +S +P E LA++GPSG GK++LL ++AG P SG ++G + + R
Sbjct: 14 RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRN 73
Query: 117 VSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDD 176
+ G V Q LFP LTV E + F KLR +P+A++RARV+ L++ +GLE + +
Sbjct: 74 I-GMVFQDYALFPHLTVAENIAFGLKLR-GVPKAEIRARVRELLELVGLEGLL-----NR 126
Query: 177 RVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVIL 236
+SGG+++RV++ + +P +L+LDEP S LD+ ++ + LK + G T I
Sbjct: 127 YPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIY 186
Query: 237 SIHQPGFRIVKMFNSILMLANGSVLHHG 264
H + + + I ++ G ++ G
Sbjct: 187 VTHDQE-EALALADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 135 bits (341), Expect = 4e-36
Identities = 65/215 (30%), Positives = 116/215 (53%), Gaps = 12/215 (5%)
Query: 58 RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI----DKAQ 113
+ L VS + + E + ++GP+G+GKS+LL++L G L P SG V+G +
Sbjct: 17 KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLE 76
Query: 114 FRKVSGYVTQ-RDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMAR 172
R+ G V Q D TVE+ + F L LP+ ++ RV ++ +GLE +
Sbjct: 77 LRQKVGLVFQNPDDQLFGPTVEDEVAFGL-ENLGLPREEIEERVAEALELVGLEELL--- 132
Query: 173 VGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGR 232
D +SGG+++RV+I + P++L+LDEPT+GLD +++++LK + E G+
Sbjct: 133 --DRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGK 190
Query: 233 TVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVD 267
T+I+ H +++ + +++L +G +L G
Sbjct: 191 TIIIVTHDLEL-VLEYADRVVVLDDGKILADGDPA 224
|
Length = 235 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 134 bits (340), Expect = 7e-36
Identities = 77/218 (35%), Positives = 113/218 (51%), Gaps = 26/218 (11%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFR 115
G RR LD VS +P +A++GP+GAGKS+L +L Q G V G + +A
Sbjct: 12 GARRALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRA 71
Query: 116 KVS--GYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARV 173
++ G V Q+ TL L+V + L + A L L +A+ RAR+ L+ LG +A
Sbjct: 72 ALARLGVVFQQPTLDLDLSVRQNLRYHAALH-GLSRAEARARIAELLARLG-----LAER 125
Query: 174 GDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRT 233
DD+VR ++GG RRRV I ++H P +L+LDEPT GLD S I ++ +A +G +
Sbjct: 126 ADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRALARDQGLS 185
Query: 234 VILSIH-----QPGFRIVKMFNSILMLANGSVLHHGTV 266
V+ + H + R+V VLH G V
Sbjct: 186 VLWATHLVDEIEADDRLV-------------VLHRGRV 210
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 134 bits (340), Expect = 1e-35
Identities = 67/218 (30%), Positives = 116/218 (53%), Gaps = 16/218 (7%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFR 115
G + +LD +S EI I+GP+G+GKS+LL+ LAG L P+SG ++G I +
Sbjct: 13 GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPK 72
Query: 116 KVS---GYVTQRDTLFPLLTVEETLMFSAK---LRLRLPQAQLRARVKSLVKELGLEHVA 169
+++ YV Q + LTV E ++ P + V+ ++ LGLEH+A
Sbjct: 73 ELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLA 132
Query: 170 MARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAET 229
V + +SGGER+RV I + + +L+LDEPTS LD ++++++L+ +
Sbjct: 133 DRPVDE-----LSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNRE 187
Query: 230 RGRTVILSIHQPG--FRIVKMFNSILMLANGSVLHHGT 265
+G TV++ +H R + +++L +G ++ GT
Sbjct: 188 KGLTVVMVLHDLNLAARYA---DHLILLKDGKIVAQGT 222
|
Length = 258 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 133 bits (337), Expect = 2e-35
Identities = 69/225 (30%), Positives = 118/225 (52%), Gaps = 23/225 (10%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKA--- 112
++ L VS P E +A++GPSGAGKS+LL L G + P SGS ++G+ I+K
Sbjct: 12 NGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGK 71
Query: 113 ---QFRKVSGYVTQRDTLFPLLTVEETLM---------FSAKLRLRLPQAQLRARVKSLV 160
Q R+ G + Q+ L L+V E ++ + + L + + RA + +
Sbjct: 72 ALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRAL--AAL 129
Query: 161 KELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQII 220
+ +GL A R +SGG+++RV+I ++ PK+++ DEP + LD S+ Q++
Sbjct: 130 ERVGLLDKAYQRADQ-----LSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVM 184
Query: 221 DMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGT 265
D+LK + G TVI+S+HQ + + I+ L +G ++ G
Sbjct: 185 DLLKRINREEGITVIVSLHQVDL-AREYADRIVGLKDGRIVFDGP 228
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 132 bits (334), Expect = 2e-35
Identities = 76/215 (35%), Positives = 125/215 (58%), Gaps = 17/215 (7%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFR 115
G VL+ VS + KP E LAIVGP+GAGKS+LL+ + G L P SGS V G P++K R
Sbjct: 10 GGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEK--ER 67
Query: 116 KVSGYVTQR---DTLFPLLTVEETLM---FSAKLRLRLPQAQLRARVKSLVKELGLEHVA 169
K GYV QR D FP ++V + ++ + K R +A+V ++ +GL +A
Sbjct: 68 KRIGYVPQRRSIDRDFP-ISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELA 126
Query: 170 MARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAET 229
D ++ +SGG+++RV + ++ DP +L+LDEP +G+D + I ++L+ +
Sbjct: 127 -----DRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR- 180
Query: 230 RGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHG 264
G T+++ H G +++ F+ +L+L N +V+ G
Sbjct: 181 EGMTILVVTHDLG-LVLEYFDRVLLL-NRTVVASG 213
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 132 bits (335), Expect = 5e-35
Identities = 69/208 (33%), Positives = 109/208 (52%), Gaps = 15/208 (7%)
Query: 54 SDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQ 113
S G VL+ ++ + E +AI+GPSG GKS+LL ++AG P SG ++G P+
Sbjct: 12 SFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPG 71
Query: 114 FRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARV 173
GYV Q D L P LTV + + +LR +A+ R R K L++ +GL
Sbjct: 72 PDI--GYVFQEDALLPWLTVLDNVALGLELR-GKSKAEARERAKELLELVGLAGFE---- 124
Query: 174 GDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRT 233
D +SGG R+RV+I + PK+L+LDEP LD+ + ++ D L + E +T
Sbjct: 125 -DKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKT 183
Query: 234 VILSIHQPGFRI---VKMFNSILMLANG 258
V+L H + V + + +++L+N
Sbjct: 184 VLLVTHD----VDEAVYLADRVVVLSNR 207
|
Length = 248 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 128 bits (325), Expect = 2e-34
Identities = 58/207 (28%), Positives = 101/207 (48%), Gaps = 46/207 (22%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI--DKAQ 113
G + LD +S + EI ++GP+GAGK++L++I+ G L P SG V G I + +
Sbjct: 11 GKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEE 70
Query: 114 FRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARV 173
++ GY+ + +L+ LTV E L
Sbjct: 71 VKRRIGYLPEEPSLYENLTVRENLKL---------------------------------- 96
Query: 174 GDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRT 233
SGG ++R+++ ++HDP++LILDEPTSGLD S + ++L+ + + G+T
Sbjct: 97 --------SGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKK-EGKT 147
Query: 234 VILSIHQPGFRIVKMFNSILMLANGSV 260
++LS H ++ + + +L NG +
Sbjct: 148 ILLSSHILEE-AERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 130 bits (328), Expect = 2e-34
Identities = 71/214 (33%), Positives = 120/214 (56%), Gaps = 10/214 (4%)
Query: 53 DSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI--D 110
D + +DGVS KP E+ ++GP+GAGK++ L +LAG L P +G V+G + +
Sbjct: 13 DVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKE 72
Query: 111 KAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAM 170
A+ R+ G+V+ L+ LT E L + A L L +L AR++ L LG+E +
Sbjct: 73 PAEARRRLGFVSDSTGLYDRLTARENLEYFAGLY-GLKGDELTARLEELADRLGMEELL- 130
Query: 171 ARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETR 230
D RV G S G R++V+I ++HDP VL+LDEPT+GLD + + + ++ +
Sbjct: 131 ----DRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRAL- 185
Query: 231 GRTVILSIHQPGFRIVKMFNSILMLANGSVLHHG 264
G+ ++ S H + ++ + +++L G V++ G
Sbjct: 186 GKCILFSTHIMQ-EVERLCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 128 bits (325), Expect = 3e-34
Identities = 69/218 (31%), Positives = 122/218 (55%), Gaps = 9/218 (4%)
Query: 47 KLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNG 106
++E G LD +S + EI ++GP+GAGK++ + ++ G + P SG +G
Sbjct: 2 EVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDG 61
Query: 107 SPIDKAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLE 166
P+D A ++ GY+ + L+P + V + L++ A+L+ L + + R R+ ++ L L
Sbjct: 62 KPLDIAARNRI-GYLPEERGLYPKMKVIDQLVYLAQLK-GLKKEEARRRIDEWLERLELS 119
Query: 167 HVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVM 226
A + RV +S G +++V VIHDP++LILDEP SGLD + + D+++ +
Sbjct: 120 EYA-----NKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIREL 174
Query: 227 AETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHG 264
A G+TVILS HQ + ++ + +L+L G + +G
Sbjct: 175 AR-AGKTVILSTHQME-LVEELCDRVLLLNKGRAVLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 130 bits (328), Expect = 8e-34
Identities = 84/228 (36%), Positives = 124/228 (54%), Gaps = 22/228 (9%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKA--- 112
G + L+ ++ A +A++GP+GAGKS+L G L P SGS + G PI K
Sbjct: 15 GSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIR 74
Query: 113 QFRKVSGYVTQR--DTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAM 170
+ RK G V Q D +F TVE+ + F + L L + + RV S + LGLE +
Sbjct: 75 EVRKFVGLVFQNPDDQIFSP-TVEQDIAF-GPINLGLDEETVAHRVSSALHMLGLEELR- 131
Query: 171 ARVGDDRV-RGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAET 229
DRV +SGGE++RV+I + +P+VL+LDEPT+GLD ++ID L + ET
Sbjct: 132 -----DRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPET 186
Query: 230 RGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTV-------DLLS 270
G TVI S HQ + +M + I ++ G ++ +GTV DLL+
Sbjct: 187 YGMTVIFSTHQLDL-VPEMADYIYVMDKGRIVAYGTVEEIFLQPDLLA 233
|
Length = 277 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 129 bits (326), Expect = 1e-33
Identities = 76/220 (34%), Positives = 117/220 (53%), Gaps = 15/220 (6%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKA--- 112
G R +LDGV EILAI+G SG+GKS+LL ++ G L P G ++G I +
Sbjct: 19 GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEE 78
Query: 113 ---QFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVA 169
+ RK G + Q+ LF LTV E + F + +LP++ +R V ++ +GL
Sbjct: 79 ELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLR--- 135
Query: 170 MARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAET 229
D +SGG R+RV++ + DP++L LDEPTSGLD SA I ++++ + +
Sbjct: 136 -GAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDA 194
Query: 230 RGRTVILSIHQ--PGFRIVKMFNSILMLANGSVLHHGTVD 267
G TVI+ H I + + +LA+G V+ GT +
Sbjct: 195 LGLTVIMVTHDLDSLLTIA---DRVAVLADGKVIAEGTPE 231
|
Length = 263 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 1e-33
Identities = 61/207 (29%), Positives = 107/207 (51%), Gaps = 38/207 (18%)
Query: 58 RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKV 117
R VLD +S + EI+ I+GP+GAGKS+LL+ LAG L P SG ++G + +++
Sbjct: 12 RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKEL 71
Query: 118 SGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDR 177
A+ +PQA ++ LGL H+A +
Sbjct: 72 -----------------------ARKIAYVPQA---------LELLGLAHLADRPFNE-- 97
Query: 178 VRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILS 237
+SGGER+RV + + +P +L+LDEPTS LD ++++++L+ +A RG+TV++
Sbjct: 98 ---LSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMV 154
Query: 238 IHQPGFRIVKMFNSILMLANGSVLHHG 264
+H + + +++L +G ++ G
Sbjct: 155 LHDLNL-AARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 127 bits (322), Expect = 2e-33
Identities = 69/224 (30%), Positives = 114/224 (50%), Gaps = 24/224 (10%)
Query: 59 RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVS 118
LD VS +P EI ++GP+GAGK++L +++G L P SGS +G I +++
Sbjct: 14 VALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIA 73
Query: 119 ----GYVTQRDTLFPLLTVEETLMFSAKLRLRLP---------QAQLRARVKSLVKELGL 165
G Q LFP LTV E +M +A+ R + + R R + L++ +GL
Sbjct: 74 RLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGL 133
Query: 166 EHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKV 225
+A D +S G++RR+ I + DPK+L+LDEP +GL+ ++ ++++
Sbjct: 134 ADLA-----DRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRE 188
Query: 226 MAETRGRTVILSIHQPGF--RIVKMFNSILMLANGSVLHHGTVD 267
+ E RG TV+L H + + + +L G V+ GT D
Sbjct: 189 LRE-RGITVLLVEHDMDVVMSLA---DRVTVLDQGRVIAEGTPD 228
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 3e-33
Identities = 61/183 (33%), Positives = 98/183 (53%), Gaps = 8/183 (4%)
Query: 59 RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI--DKAQFRK 116
+ GVS + + EI ++GP+GAGK++ +++L L P SG V G + + + R+
Sbjct: 14 EAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRR 73
Query: 117 VSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDD 176
G V Q ++ LT E L A+L +P A+ R R+ L L+ V + D
Sbjct: 74 RIGIVFQDLSVDDELTGWENLYIHARLY-GVPGAERRERIDEL-----LDFVGLLEAADR 127
Query: 177 RVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVIL 236
V+ SGG RRR+ I ++H P+VL LDEPT GLD + + + ++ + E G T++L
Sbjct: 128 LVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILL 187
Query: 237 SIH 239
+ H
Sbjct: 188 TTH 190
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 129 bits (325), Expect = 3e-33
Identities = 62/183 (33%), Positives = 96/183 (52%), Gaps = 9/183 (4%)
Query: 59 RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI--DKAQFRK 116
+ +DGV+ K + E+ +GP+GAGK++ + +L L P SG+ V G + + + R+
Sbjct: 7 KAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRR 66
Query: 117 VSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDD 176
G V Q ++ LT E L +L LP+ + R + L++ L A D
Sbjct: 67 SIGIVPQYASVDEDLTGRENLEMMGRL-YGLPKDEAEERAEELLELFELGEAA-----DR 120
Query: 177 RVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVIL 236
V SGG RRR+ I +IH P VL LDEPT+GLD + I D ++ + E G T++L
Sbjct: 121 PVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEE-GVTILL 179
Query: 237 SIH 239
+ H
Sbjct: 180 TTH 182
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 127 bits (322), Expect = 7e-33
Identities = 65/186 (34%), Positives = 109/186 (58%), Gaps = 10/186 (5%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKA--Q 113
G + LD VS +A+ I+ +GP+GAGKS+ ++I+ G L P SGS V G + + +
Sbjct: 13 GTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKE 72
Query: 114 FRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARV 173
++ GY+ + + L+ + V E L F A + + L+ RV+ +++ +GL ++
Sbjct: 73 VQRNIGYLPEHNPLYLDMYVREYLQFIAGI-YGMKGQLLKQRVEEMIELVGLRPEQHKKI 131
Query: 174 GDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRT 233
G +S G R+RV + +IHDPKVLILDEPT+GLD ++I +++K + + +T
Sbjct: 132 GQ-----LSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIG--KDKT 184
Query: 234 VILSIH 239
+ILS H
Sbjct: 185 IILSTH 190
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 128 bits (324), Expect = 1e-32
Identities = 69/214 (32%), Positives = 114/214 (53%), Gaps = 10/214 (4%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK--AQ 113
G VL V+ + E + ++GPSG GKS+LL ++AG P SG ++G + +
Sbjct: 14 GSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPE 73
Query: 114 FRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARV 173
R + V Q L+P +TV E + F KLR +P+A++ RVK + K LGLEH+
Sbjct: 74 KRGI-AMVFQNYALYPHMTVYENIAFGLKLR-GVPKAEIDKRVKEVAKLLGLEHLL---- 127
Query: 174 GDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRT 233
+ + +SGG+R+RV++ ++ PKV +LDEP S LD+ + + +K + E G T
Sbjct: 128 -NRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTT 186
Query: 234 VILSIHQPGFRIVKMFNSILMLANGSVLHHGTVD 267
I H + + + I+++ +G + GT
Sbjct: 187 TIYVTHDQ-VEAMTLADRIVVMNDGRIQQVGTPL 219
|
Length = 338 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 123 bits (311), Expect = 1e-32
Identities = 62/208 (29%), Positives = 97/208 (46%), Gaps = 46/208 (22%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---- 111
G + VL+ VS + EI+A++GPSG+GKS+LL +AG P SGS ++G +
Sbjct: 11 GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDE 70
Query: 112 -AQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAM 170
R+ G V Q LFP LTV E +
Sbjct: 71 LPPLRRRIGMVFQDFALFPHLTVLENIAL------------------------------- 99
Query: 171 ARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETR 230
G+SGG+++RV++ + DP VL+LDEPTS LD + ++ +LK +
Sbjct: 100 ---------GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQL 150
Query: 231 GRTVILSIHQPGFRIVKMFNSILMLANG 258
G TV+L H ++ + +++L +G
Sbjct: 151 GITVVLVTHDLDE-AARLADRVVVLRDG 177
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 127 bits (321), Expect = 3e-32
Identities = 72/214 (33%), Positives = 117/214 (54%), Gaps = 15/214 (7%)
Query: 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNG---SPIDKA---Q 113
LD VS + EI I+G SGAGKS+LL ++ P SGS FV+G + + +A Q
Sbjct: 21 ALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQ 80
Query: 114 FRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARV 173
R+ G + Q L TV E + F +L +P+A+++ RV L++ +GL A
Sbjct: 81 LRQKIGMIFQHFNLLSSRTVFENVAFPLELA-GVPKAEIKQRVAELLELVGLSDKA---- 135
Query: 174 GDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRT 233
D +SGG+++RV+I + ++PK+L+ DE TS LD + I+++LK + G T
Sbjct: 136 -DRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLT 194
Query: 234 VILSIHQPGFRIVKMF-NSILMLANGSVLHHGTV 266
++L H+ +VK + + +L G ++ GTV
Sbjct: 195 IVLITHEM--EVVKRICDRVAVLDQGRLVEEGTV 226
|
Length = 339 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 121 bits (307), Expect = 4e-32
Identities = 62/208 (29%), Positives = 95/208 (45%), Gaps = 51/208 (24%)
Query: 54 SDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI---D 110
+ VL VS KP E +AIVGPSG+GKS+LL++L P SG ++G + D
Sbjct: 11 PGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLD 70
Query: 111 KAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAM 170
RK YV Q LF T+ E +
Sbjct: 71 LESLRKNIAYVPQDPFLFS-GTIRENI--------------------------------- 96
Query: 171 ARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETR 230
+SGG+R+R++I ++ DP +LILDE TS LD + I++ L+ A +
Sbjct: 97 ----------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALR--ALAK 144
Query: 231 GRTVILSIHQPGFRIVKMFNSILMLANG 258
G+TVI+ H+ ++ + I++L +G
Sbjct: 145 GKTVIVIAHRL--STIRDADRIIVLDDG 170
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 124 bits (312), Expect = 5e-32
Identities = 69/223 (30%), Positives = 117/223 (52%), Gaps = 10/223 (4%)
Query: 59 RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI--DKAQFRK 116
+ + VS +A+ EI ++G +GAGK++LL ++A L P SG ++G D + R+
Sbjct: 16 QAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRR 75
Query: 117 VSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDD 176
G + L+ LT E L + A+L L + +++AR+ L K L L D
Sbjct: 76 KIGVLFGERGLYARLTARENLKYFARLN-GLSRKEIKARIAELSKRLQLLEYL-----DR 129
Query: 177 RVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVIL 236
RV S G +++V+I ++HDP +L+LDEPTSGLD + + D +K + GR VI
Sbjct: 130 RVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNE-GRAVIF 188
Query: 237 SIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSVSLRMMGLQ 279
S H + + + +++L G V+ G+++ L + L+
Sbjct: 189 SSHIMQ-EVEALCDRVIVLHKGEVVLEGSIEALDARTVLRNLE 230
|
Length = 245 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 123 bits (311), Expect = 1e-31
Identities = 68/226 (30%), Positives = 116/226 (51%), Gaps = 19/226 (8%)
Query: 58 RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKA----- 112
+ L V+ + E++AI+GPSGAGKS+LL L G + P SG NG I K
Sbjct: 17 HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKEL 76
Query: 113 -QFRKVSGYVTQRDTLFPLLTVEETLMFS-----AKLR--LRLPQAQLRARVKSLVKELG 164
+ R+ G + Q+ L P L+V E ++ + R L + +A+ ++ +G
Sbjct: 77 RKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVG 136
Query: 165 LEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLK 224
+ A R +SGG+++RV+I ++ PK+++ DEP + LD SA +++D+LK
Sbjct: 137 ILDKAYQRAST-----LSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILK 191
Query: 225 VMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270
+ + G TVI+++HQ K + I+ L G ++ G L+
Sbjct: 192 DINQEDGITVIVNLHQVDL-AKKYADRIIGLKAGRIVFDGPASELT 236
|
Length = 258 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 121 bits (306), Expect = 2e-31
Identities = 65/204 (31%), Positives = 109/204 (53%), Gaps = 17/204 (8%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---- 111
G VL G+ K E++ I+GPSG+GKS+LL + P SG+ ++G +
Sbjct: 11 GDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKN 70
Query: 112 -AQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAM 170
+ R+ G V Q+ LFP LTV E + + + +A+ R L++++GL A
Sbjct: 71 INELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKA- 129
Query: 171 ARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETR 230
D +SGG+++RV+I + +PKV++ DEPTS LD +++D++K +AE
Sbjct: 130 ----DAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEE- 184
Query: 231 GRTVILSIHQPGF------RIVKM 248
G T+++ H+ GF R++ M
Sbjct: 185 GMTMVVVTHEMGFAREVADRVIFM 208
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 4e-31
Identities = 64/191 (33%), Positives = 96/191 (50%), Gaps = 13/191 (6%)
Query: 55 DGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQ- 113
G + LD VS K E L +VG SG+GKS+L + G L P SGS +G + K
Sbjct: 15 GGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSR 74
Query: 114 -----FRKVSGYVTQ--RDTLFPLLTVEETLMFSAKLRLRL-PQAQLRARVKSLVKELGL 165
RK V Q +L P +T+ E + ++ +L + + V L+ +GL
Sbjct: 75 RLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGL 134
Query: 166 EHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKV 225
V + +SGG+R+RV+I + +PK+LI DEPTS LD + QI+D+LK
Sbjct: 135 P----EEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKK 190
Query: 226 MAETRGRTVIL 236
+ E G T++
Sbjct: 191 LQEELGLTLLF 201
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 4e-31
Identities = 67/188 (35%), Positives = 106/188 (56%), Gaps = 15/188 (7%)
Query: 59 RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQ----- 113
VL G++ A+ E+LA++G +GAGKS+LL L G L PQSG+ ++G P+D ++
Sbjct: 6 EVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLE 65
Query: 114 FRKVSGYVTQR--DTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMA 171
R+ G V Q D LF V++ + F L L L +A++ RV+ + +G +
Sbjct: 66 RRQRVGLVFQDPDDQLFA-ADVDQDVAFGP-LNLGLSEAEVERRVREALTAVGASGLR-- 121
Query: 172 RVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRG 231
+ +SGGE++RV+I V P VL+LDEPT+GLD Q++ +L+ + G
Sbjct: 122 ---ERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRA-EG 177
Query: 232 RTVILSIH 239
TV++S H
Sbjct: 178 MTVVISTH 185
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 6e-31
Identities = 65/203 (32%), Positives = 100/203 (49%), Gaps = 18/203 (8%)
Query: 70 PWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKA--------QFRKVSGYV 121
E+ I G SGAGKS+LL +AG P G+ +NG+ + + Q RK+ G V
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKI-GLV 80
Query: 122 TQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGI 181
Q+ LFP L V E L F K R + R V L+ LGL+H+ +
Sbjct: 81 FQQYALFPHLNVRENLAFGLK---RKRNREDRISVDELLDLLGLDHLLNRYPA-----QL 132
Query: 182 SGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQP 241
SGGE++RV++ + P++L+LDEP S LD LQ++ LK + + VI H
Sbjct: 133 SGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDL 192
Query: 242 GFRIVKMFNSILMLANGSVLHHG 264
+ + I+++ +G + + G
Sbjct: 193 S-EAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 6e-31
Identities = 60/207 (28%), Positives = 117/207 (56%), Gaps = 13/207 (6%)
Query: 58 RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKA----- 112
++VL ++ + P EI+ + GPSG+GK++LL ++ G + Q GS V G + A
Sbjct: 18 KQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKEL 77
Query: 113 -QFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMA 171
Q R+ GY+ Q L LT + + + +L+ L + R R +++++ +GL
Sbjct: 78 VQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGD---- 133
Query: 172 RVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRG 231
+ D +SGG+++RV+I ++H PK+++ DEPT+ LDS S ++++++ +A +G
Sbjct: 134 HL-DYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQG 192
Query: 232 RTVILSIHQPGFRIVKMFNSILMLANG 258
T+++ H RI+ + + I+ + +G
Sbjct: 193 CTILIVTHDN--RILDVADRIVHMEDG 217
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 9e-31
Identities = 63/213 (29%), Positives = 110/213 (51%), Gaps = 18/213 (8%)
Query: 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI-----DKAQF 114
L VS + + + I+GP+G+GKS LLE +AG + P SG +NG I +K
Sbjct: 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDI 73
Query: 115 RKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVG 174
YV Q LFP +TV + + + K R + ++ +V + + LG++H+
Sbjct: 74 ----SYVPQNYALFPHMTVYKNIAYGLKKRKV-DKKEIERKVLEIAEMLGIDHLL----- 123
Query: 175 DDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTV 234
+ + +SGGE++RV+I ++ +PK+L+LDEP S LD + ++ + LK + + G TV
Sbjct: 124 NRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTV 183
Query: 235 ILSIHQPGFRIVKMF-NSILMLANGSVLHHGTV 266
+ H F + + ++ NG ++ G
Sbjct: 184 LHVTHD--FEEAWALADKVAIMLNGKLIQVGKP 214
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 9e-31
Identities = 61/192 (31%), Positives = 97/192 (50%), Gaps = 13/192 (6%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI---DKA 112
G R L VS P E +A+VGPSGAGKS+LL +L G + P GS VNG P+ D
Sbjct: 333 GRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADAD 392
Query: 113 QFRKVSGYVTQRDTLFPLLTVEETLMFSAK--LRLRLPQAQLRARVKSLVKELGLEHVAM 170
+R +V Q LF T+ E + + + +A RA + V L
Sbjct: 393 SWRDQIAWVPQHPFLFA-GTIAENIRLARPDASDAEIREALERAGLDEFVAALPQGL--- 448
Query: 171 ARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIID-MLKVMAET 229
+ G+SGG+ +R+++ + D +L+LDEPT+ LD+ + ++++ + +
Sbjct: 449 DTPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALA--- 505
Query: 230 RGRTVILSIHQP 241
+GRTV+L H+
Sbjct: 506 QGRTVLLVTHRL 517
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 9e-31
Identities = 74/218 (33%), Positives = 121/218 (55%), Gaps = 13/218 (5%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKA--- 112
G LD +S K E++A++GPSGAGKS+LL I+AG TP +G +NG +
Sbjct: 13 GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNL 72
Query: 113 --QFRKVSGYVTQRDTLFPLLTVEETLMFSAKLR-LRLPQAQLRARVKSLVKELGLEHVA 169
+ RKV G+V Q LFP +TV + + F K+R R +A++RARV+ L++ + LE +A
Sbjct: 73 AVRDRKV-GFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLA 131
Query: 170 MARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAET 229
D +SGG+R+RV++ + +PKVL+LDEP LD+ ++ L+ + +
Sbjct: 132 -----DRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDR 186
Query: 230 RGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVD 267
G T + H +++ + +++L G + G D
Sbjct: 187 LGVTTVFVTHDQEE-ALELADRVVVLNQGRIEQVGPPD 223
|
Length = 345 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 2e-30
Identities = 72/199 (36%), Positives = 113/199 (56%), Gaps = 16/199 (8%)
Query: 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI----DKAQFR 115
VL G+S + E++ I+GPSG+GKS+LL L G P SGS V+G + D + R
Sbjct: 17 VLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLR 76
Query: 116 KVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGD 175
+ G V Q+ LFP LTV E + + +L +A+ R + L++++GL A D
Sbjct: 77 RKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKA-----D 131
Query: 176 DRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVI 235
+SGG+++RV+I + DPKV++ DEPTS LD +++D++K +AE G T+I
Sbjct: 132 AYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEE-GMTMI 190
Query: 236 LSIHQPGF------RIVKM 248
+ H+ GF R++ M
Sbjct: 191 IVTHEMGFAREVADRVIFM 209
|
Length = 240 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 125 bits (317), Expect = 2e-30
Identities = 71/239 (29%), Positives = 119/239 (49%), Gaps = 21/239 (8%)
Query: 43 EELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKL----TPQ 98
E L+ E A G + VS + +P EIL IVG SG+GKS+L L G L
Sbjct: 9 ENLTV--EFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRIT 66
Query: 99 SGSTFVNGSPIDK---AQFRKVSG----YVTQR--DTLFPLLTVEETLMFSAKLRLRLPQ 149
SG ++G + + RK+ G + Q +L P++T+ + + + +L + +
Sbjct: 67 SGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSR 126
Query: 150 AQLRARVKSLVKELGLEHVAMARVGDDRV-RGISGGERRRVSIGFDVIHDPKVLILDEPT 208
A+ R R L++++GL DR +SGG R+RV I + PK+LI DEPT
Sbjct: 127 AEARKRAVELLEQVGLPDPERR----DRYPHQLSGGMRQRVMIAMALALKPKLLIADEPT 182
Query: 209 SGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVD 267
+ LD T+ QI+D+LK + G V+ H G + ++ + ++++ G ++ G +
Sbjct: 183 TALDVTTQAQILDLLKDLQRELGMAVLFITHDLGV-VAELADRVVVMYKGEIVETGPTE 240
|
Length = 539 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 117 bits (296), Expect = 3e-30
Identities = 67/205 (32%), Positives = 114/205 (55%), Gaps = 15/205 (7%)
Query: 58 RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKV 117
+LD +S EI+A+ G +GAGK++L +ILAG + SGS +NG PI + RK
Sbjct: 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKS 72
Query: 118 SGYVTQ--RDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGD 175
GYV Q LF +V E L+ K L +A +++K+L L + +
Sbjct: 73 IGYVMQDVDYQLF-TDSVREELLLGLK---ELDAGNEQAE--TVLKDLDLYALK-----E 121
Query: 176 DRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVI 235
+SGG+++R++I ++ +LI DEPTSGLD + ++ ++++ +A +G+ VI
Sbjct: 122 RHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAA-QGKAVI 180
Query: 236 LSIHQPGFRIVKMFNSILMLANGSV 260
+ H F + K+ + +L+LANG++
Sbjct: 181 VITHDYEF-LAKVCDRVLLLANGAI 204
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 121 bits (306), Expect = 3e-30
Identities = 65/186 (34%), Positives = 105/186 (56%), Gaps = 8/186 (4%)
Query: 59 RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK--AQFRK 116
+D +S K E + ++GPSG GK++LL ++AG P SG ++G I + R
Sbjct: 19 TAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRP 78
Query: 117 VSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDD 176
+ G V Q LFP +TVEE + F K+R +L +A+++ARV+ ++ +GLE A D
Sbjct: 79 I-GMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFA-----DR 132
Query: 177 RVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVIL 236
+ +SGG+++RV++ ++ +PKVL+LDEP S LD+ Q+ LK + G T +
Sbjct: 133 KPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVY 192
Query: 237 SIHQPG 242
H
Sbjct: 193 VTHDQE 198
|
Length = 352 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 3e-30
Identities = 70/222 (31%), Positives = 113/222 (50%), Gaps = 15/222 (6%)
Query: 52 ADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNG----- 106
D+ G L VS EI I+G SGAGKS+L+ + G P SGS V+G
Sbjct: 12 GDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTL 71
Query: 107 -SPIDKAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGL 165
S + + R+ G + Q L TV E + ++ +P+A++ RV L++ +GL
Sbjct: 72 LSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEI-AGVPKAEIEERVLELLELVGL 130
Query: 166 EHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKV 225
E A D +SGG+++RV I + ++PKVL+ DE TS LD + I+ +L+
Sbjct: 131 EDKA-----DAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRD 185
Query: 226 MAETRGRTVILSIHQPGFRIVK-MFNSILMLANGSVLHHGTV 266
+ G T++L H+ +VK + + + ++ G V+ GTV
Sbjct: 186 INRELGLTIVLITHE--MEVVKRICDRVAVMEKGEVVEEGTV 225
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 124 bits (314), Expect = 4e-30
Identities = 61/176 (34%), Positives = 95/176 (53%), Gaps = 11/176 (6%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPID----- 110
G + +D VS + E L +VG SG+GKS+L ILAG L P SGS +G +D
Sbjct: 302 GEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGE 361
Query: 111 -KAQFRKVS-GYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHV 168
+ R++ + +L P +TV + L ++ A+ RARV L++ +GL
Sbjct: 362 LRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPE 421
Query: 169 AMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLK 224
+ R +SGG+R+RV+I + +PK+LILDEP S LD + Q++++LK
Sbjct: 422 FLDR----YPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLK 473
|
Length = 539 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 4e-30
Identities = 60/207 (28%), Positives = 109/207 (52%), Gaps = 13/207 (6%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-AQF 114
G +RVLD +S K EI +GP+GAGK++ ++I+ G + P SG +G K +
Sbjct: 11 GKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEA 70
Query: 115 RKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVG 174
+ G + + +P LT E L A+L L + + R+ ++ +GL+
Sbjct: 71 LRRIGALIEAPGFYPNLTARENLRLLARL-LGIR----KKRIDEVLDVVGLKD-----SA 120
Query: 175 DDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTV 234
+V+G S G ++R+ I ++ +P +LILDEPT+GLD ++ +++ + + G TV
Sbjct: 121 KKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQ-GITV 179
Query: 235 ILSIHQPGFRIVKMFNSILMLANGSVL 261
++S H I K+ + I ++ G ++
Sbjct: 180 LISSHLLS-EIQKVADRIGIINKGKLI 205
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 9e-30
Identities = 71/209 (33%), Positives = 110/209 (52%), Gaps = 10/209 (4%)
Query: 59 RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGS-PID-KAQFRK 116
L G+S + EI+ +GP+GAGK++ L+IL+G L P SG V G P + +F +
Sbjct: 35 EALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLR 94
Query: 117 VSGYVT-QRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGD 175
G V Q+ L+ L V ++ A + LP A+ + R+ L + L LE + D
Sbjct: 95 RIGVVFGQKTQLWWDLPVIDSFYLLAAI-YDLPPARFKKRLDELSELLDLEELL-----D 148
Query: 176 DRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVI 235
VR +S G+R R I ++H+P++L LDEPT GLD + I + LK RG TV+
Sbjct: 149 TPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVL 208
Query: 236 LSIHQPGFRIVKMFNSILMLANGSVLHHG 264
L+ H I + +L++ G +L+ G
Sbjct: 209 LTSHYMK-DIEALARRVLVIDKGRLLYDG 236
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 1e-29
Identities = 71/201 (35%), Positives = 100/201 (49%), Gaps = 18/201 (8%)
Query: 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK------AQ 113
+L GV K E +AIVGPSG+GKS+LL +LAG P SG + G P+ K A
Sbjct: 25 ILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAA 84
Query: 114 FRKVS-GYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMAR 172
R G+V Q L P LT E + +LR A RA K+L++ +GL R
Sbjct: 85 LRARHVGFVFQSFHLIPNLTALENVALPLELR-GESSADSRAGAKALLEAVGLGK----R 139
Query: 173 VGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGR 232
+ +SGGE++RV++ P VL DEPT LD + +I D+L + RG
Sbjct: 140 L-THYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGT 198
Query: 233 TVILSIHQPGF-----RIVKM 248
T++L H P R +++
Sbjct: 199 TLVLVTHDPQLAARCDRQLRL 219
|
Length = 228 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 2e-29
Identities = 64/188 (34%), Positives = 100/188 (53%), Gaps = 13/188 (6%)
Query: 58 RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI------DK 111
L VS + E L + GPSGAGK++LL++L G LTP G + G +
Sbjct: 15 VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQL 74
Query: 112 AQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMA 171
R+ G V Q L P TV E + ++R + +++ RV + ++++GLEH A A
Sbjct: 75 PLLRRRIGVVFQDFRLLPDRTVYENVALPLEVR-GKKEREIQRRVGAALRQVGLEHKADA 133
Query: 172 RVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRG 231
+SGGE++RV+I +++ P +L+ DEPT LD + +I+D+LK RG
Sbjct: 134 FPEQ-----LSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLK-RLNKRG 187
Query: 232 RTVILSIH 239
TVI++ H
Sbjct: 188 TTVIVATH 195
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 117 bits (296), Expect = 3e-29
Identities = 64/221 (28%), Positives = 126/221 (57%), Gaps = 11/221 (4%)
Query: 47 KLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNG 106
++E S G ++ +D +S + P EI ++GP+GAGK++ ++ G L P G NG
Sbjct: 4 EIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNG 63
Query: 107 SPIDKAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGL- 165
P+ + ++ GY+ + L+P +TVE+ L + A+L+ +P+A+++ ++++ ++ L +
Sbjct: 64 GPLSQEIKNRI-GYLPEERGLYPKMTVEDQLKYLAELK-GMPKAEIQKKLQAWLERLEIV 121
Query: 166 EHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKV 225
+++ +S G ++++ VIH+P++LILDEP SGLD + + D +
Sbjct: 122 GKKT------KKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFE 175
Query: 226 MAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTV 266
+ E G T+I S H+ + ++ + +LML G + +GTV
Sbjct: 176 LKE-EGATIIFSSHRME-HVEELCDRLLMLKKGQTVLYGTV 214
|
Length = 300 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 3e-29
Identities = 60/185 (32%), Positives = 101/185 (54%), Gaps = 13/185 (7%)
Query: 61 LDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVS-- 118
LDG++ E + +VGPSGAGKS+LL+++ + P SG+ VNG + + R +
Sbjct: 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYL 76
Query: 119 ----GYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVG 174
G V Q L P V E + F+ ++ P+ ++R RV + ++ +GL H
Sbjct: 77 RRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPR-EIRKRVPAALELVGLSHKH----- 130
Query: 175 DDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTV 234
+SGGE++RV+I +++ P +LI DEPT LD + +I+++LK + G TV
Sbjct: 131 RALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKI-NKAGTTV 189
Query: 235 ILSIH 239
+++ H
Sbjct: 190 VVATH 194
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 6e-29
Identities = 59/200 (29%), Positives = 100/200 (50%), Gaps = 11/200 (5%)
Query: 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFV 104
L +L++ G ++L+ +S + E +AI GPSG GKS+LL+I+A ++P SG+
Sbjct: 3 LLELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLF 62
Query: 105 NGSPIDKA---QFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVK 161
G + +R+ Y Q LF TVE+ L+F ++R R P RA L+
Sbjct: 63 EGEDVSTLKPEAYRQQVSYCAQTPALFGD-TVEDNLIFPWQIRNRRPD---RAAALDLLA 118
Query: 162 ELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIID 221
L + + +SGGE++R+++ ++ PK+L+LDE TS LD ++ I +
Sbjct: 119 RFALPD----SILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEE 174
Query: 222 MLKVMAETRGRTVILSIHQP 241
M+ + V+ H
Sbjct: 175 MIHRYVREQNVAVLWITHDK 194
|
Length = 223 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 8e-29
Identities = 66/186 (35%), Positives = 106/186 (56%), Gaps = 9/186 (4%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKA--Q 113
G + V+DG+S + E ++GP+GAGK++ L +L G P +GS + G P+
Sbjct: 18 GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARH 77
Query: 114 FRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARV 173
R+ G V Q D L P TV E L+ + L A RA V L++ LE+ A A+V
Sbjct: 78 ARQRVGVVPQFDNLDPDFTVRENLLVFGRY-FGLSAAAARALVPPLLEFAKLENKADAKV 136
Query: 174 GDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRT 233
G+ +SGG +RR+++ +++DP VL+LDEPT+GLD + + + L+ + RG+T
Sbjct: 137 GE-----LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLL-ARGKT 190
Query: 234 VILSIH 239
++L+ H
Sbjct: 191 ILLTTH 196
|
Length = 306 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 1e-28
Identities = 76/215 (35%), Positives = 122/215 (56%), Gaps = 20/215 (9%)
Query: 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI--DKA---QF 114
L G++ KA+ E++A++GP+GAGKS+L G L P SG + G PI DK +
Sbjct: 17 ALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEV 76
Query: 115 RKVSGYVTQR--DTLF-PLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMA 171
RK G V Q D LF P TVEE + F L L L + ++ RVK +K +G+E
Sbjct: 77 RKTVGIVFQNPDDQLFAP--TVEEDVAF-GPLNLGLSKEEVEKRVKEALKAVGMEGFE-- 131
Query: 172 RVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRG 231
+ +SGG+++RV+I + P++++LDEPTSGLD A QI+ +L + + G
Sbjct: 132 ---NKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNK-EG 187
Query: 232 RTVILSIHQPGFRIVKMF-NSILMLANGSVLHHGT 265
T+I+S H +V ++ + + ++++G ++ GT
Sbjct: 188 ITIIISTHD--VDLVPVYADKVYVMSDGKIIKEGT 220
|
Length = 275 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 2e-28
Identities = 70/208 (33%), Positives = 118/208 (56%), Gaps = 17/208 (8%)
Query: 58 RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI---DKAQF 114
LD VS + E +AI+G G+GKS+LL++LAG P SGS ++G+ I D A
Sbjct: 17 IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADL 76
Query: 115 RKVSGYVTQRDTLFPLLTVEETLMFSAKL--RLRLPQAQLRARVKSLVKEL--GLEHVAM 170
R+ GYV Q TLF T+ + + A L R+ +A A V V + GL+
Sbjct: 77 RRNIGYVPQDVTLF-YGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLD---- 131
Query: 171 ARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETR 230
++G+ R RG+SGG+R+ V++ +++DP +L+LDEPTS +D S ++ + L+
Sbjct: 132 LQIGE-RGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLR--QLLG 188
Query: 231 GRTVILSIHQPGFRIVKMFNSILMLANG 258
+T+I+ H+P ++ + + I+++ +G
Sbjct: 189 DKTLIIITHRP--SLLDLVDRIIVMDSG 214
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 3e-28
Identities = 65/221 (29%), Positives = 108/221 (48%), Gaps = 23/221 (10%)
Query: 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKA------Q 113
L ++ P E +AI+GPSGAGKS+LL + + P SGS + G+ I K +
Sbjct: 17 ALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRK 76
Query: 114 FRKVSGYVTQRDTLFPLLTVEETLM--------FSAKLRLRLPQAQLRARVKSLVKELGL 165
R+ G + Q L LTV E ++ L R + + R S ++ +GL
Sbjct: 77 LRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEED-KERALSALERVGL 135
Query: 166 EHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKV 225
A R +SGG+++RV+I + P +++ DEP + LD ++ Q++D LK
Sbjct: 136 ADKA-----YQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKR 190
Query: 226 MAETRGRTVILSIHQPGFRIVKMFNS-ILMLANGSVLHHGT 265
+ + G TVI+++HQ + K + I+ L G ++ G
Sbjct: 191 INKEDGITVIINLHQ--VDLAKKYADRIVGLKAGEIVFDGA 229
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 3e-28
Identities = 65/203 (32%), Positives = 98/203 (48%), Gaps = 56/203 (27%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFR 115
G R LD VS K EI+A+VGP+G+GKS+LL +AG L P SG ++G I K
Sbjct: 10 GGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAK---- 65
Query: 116 KVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGD 175
LP +LR R+ V +L
Sbjct: 66 -------------------------------LPLEELRRRI-GYVPQL------------ 81
Query: 176 DRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVI 235
SGG+R+RV++ ++ +P +L+LDEPTSGLD S +++++L+ +AE GRTVI
Sbjct: 82 ------SGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAE-EGRTVI 134
Query: 236 LSIHQPGFRIVKMFNSILMLANG 258
+ H P + +++L +G
Sbjct: 135 IVTHDPEL-AELAADRVIVLKDG 156
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 112 bits (281), Expect = 5e-28
Identities = 64/210 (30%), Positives = 107/210 (50%), Gaps = 17/210 (8%)
Query: 59 RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI------DKA 112
RVL GVS EI+AIVG SG+GKS+LL +L G P SG NG + ++A
Sbjct: 19 RVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERA 78
Query: 113 QFRKVS-GYVTQRDTLFPLLTVEETLMFSAKLRLRLPQ-AQLRARVKSLVKELGLEHVAM 170
+ R G++ Q L P T E + + + + A+ RA +++++GLEH
Sbjct: 79 KLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERA--YEMLEKVGLEHRIN 136
Query: 171 ARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETR 230
R + +SGGER+RV+I +++ P +++ DEPT LD+ +A I D++ +
Sbjct: 137 HRPSE-----LSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNREL 191
Query: 231 GRTVILSIHQPGFRIVKMFNSILMLANGSV 260
+ ++ H K + +L + +G +
Sbjct: 192 NTSFLVVTHDLEL--AKKLDRVLEMKDGQL 219
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 5e-28
Identities = 65/222 (29%), Positives = 110/222 (49%), Gaps = 17/222 (7%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQ-F 114
G + L GVS + + EI+A++G +GAGK++LL+ + G + P+SG +G I
Sbjct: 14 GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPH 73
Query: 115 RKVS---GYVTQRDTLFPLLTVEETLMFSAK-LRLRLPQAQLRARVKSLVKELGLEHVAM 170
+ YV + +FP LTVEE L+ A R + Q + V L L
Sbjct: 74 ERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRL----KER 129
Query: 171 --ARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAE 228
R G +SGGE++ ++I ++ PK+L+LDEP+ GL +I + +K + +
Sbjct: 130 RNQRAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRK 184
Query: 229 TRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270
G T++L + Q +++ + +L NG ++ GT L
Sbjct: 185 EGGMTILL-VEQNARFALEIADRGYVLENGRIVLSGTAAELL 225
|
Length = 237 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 6e-28
Identities = 70/217 (32%), Positives = 113/217 (52%), Gaps = 21/217 (9%)
Query: 58 RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI---DKAQF 114
+ L + E +AI+G SG+GKS+LL++LAG PQ GS +NG I D+
Sbjct: 351 TKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQAL 410
Query: 115 RKVSGYVTQRDTLFPLLTVEETLMFSAK------LRLRLPQAQLRARVKSLVKELGLEHV 168
R+ +TQR LF T+ + L + L L Q L ++S L
Sbjct: 411 RETISVLTQRVHLFS-GTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGL----- 464
Query: 169 AMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAE 228
+G+ R +SGGERRR+++ ++HD + +LDEPT GLD + Q++ +L AE
Sbjct: 465 -NTWLGEGG-RRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE 522
Query: 229 TRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGT 265
G+T+++ H+ R ++ + I++L NG ++ GT
Sbjct: 523 --GKTLLMVTHR--LRGLERMDRIIVLDNGKIIEEGT 555
|
Length = 573 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 8e-28
Identities = 59/228 (25%), Positives = 108/228 (47%), Gaps = 21/228 (9%)
Query: 54 SDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAG-----KLTPQSGSTFVNGSP 108
G + L +S EI A++GPSG GKS+LL +L P G ++G
Sbjct: 9 YYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKD 68
Query: 109 I-----DKAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKEL 163
I D + R+ G V Q+ FP ++ + + + +L + +L RV+
Sbjct: 69 IYDLDVDVLELRRRVGMVFQKPNPFP-GSIYDNVAYGLRLHGIKLKEELDERVEEA---- 123
Query: 164 GLEHVAMARVGDDR--VRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIID 221
L A+ DR G+SGG+++R+ + + ++P+VL+LDEPTS LD S +I +
Sbjct: 124 -LRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEE 182
Query: 222 MLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLL 269
++ + + T+++ H + ++ + L NG ++ G + +
Sbjct: 183 LIAELKKE--YTIVIVTHNMQ-QAARVADRTAFLLNGRLVEFGPTEQI 227
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 8e-28
Identities = 65/211 (30%), Positives = 108/211 (51%), Gaps = 22/211 (10%)
Query: 65 SCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNG---SPIDKAQFRKVSGYV 121
EI+AI+GPSGAGKS+LL ++AG TP SG +NG + A+ R VS +
Sbjct: 19 DLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAE-RPVS-ML 76
Query: 122 TQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVG----DDR 177
Q + LF LTV + + L+L Q R +V A A+VG R
Sbjct: 77 FQENNLFAHLTVAQNIGLGLSPGLKLNAEQ-REKV----------EAAAAQVGLAGFLKR 125
Query: 178 VRG-ISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVIL 236
+ G +SGG+R+RV++ ++ + +L+LDEP S LD +++ ++ + + R T+++
Sbjct: 126 LPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLM 185
Query: 237 SIHQPGFRIVKMFNSILMLANGSVLHHGTVD 267
H P ++ + ++ L NG + G+
Sbjct: 186 VTHHPE-DAARIADRVVFLDNGRIAAQGSTQ 215
|
Length = 231 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 9e-28
Identities = 70/196 (35%), Positives = 105/196 (53%), Gaps = 19/196 (9%)
Query: 55 DGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI---DK 111
G VLDGVS P E +AI+GPSG+GKS+LL LAG L P G ++G P+ D+
Sbjct: 345 PGAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQ 404
Query: 112 AQFRKVSGYVTQRDTLFPLLTVEETLMFSAK------LRLRLPQAQLRARVKSLVKELGL 165
+ R+ Q LF TV E L + L L + L +++L GL
Sbjct: 405 DEVRRRVSVCAQDAHLFD-TTVRENLRLARPDATDEELWAALERVGLADWLRAL--PDGL 461
Query: 166 EHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKV 225
+ V +G+ R +SGGER+R+++ ++ D +L+LDEPT LD+ +A ++++ L
Sbjct: 462 DTV----LGEGGAR-LSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDL-- 514
Query: 226 MAETRGRTVILSIHQP 241
+A GRTV+L H
Sbjct: 515 LAALSGRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 1e-27
Identities = 57/196 (29%), Positives = 105/196 (53%), Gaps = 7/196 (3%)
Query: 47 KLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNG 106
+ E + G ++ +D V+ + E L ++GPSG+GK++ L+++ + P SG ++G
Sbjct: 3 EFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDG 62
Query: 107 SPI---DKAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKEL 163
I D + R+ GYV Q+ LFP LTV E + KL L + +++ R L+ +
Sbjct: 63 EDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKL-LGWDKERIKKRADELLDLV 121
Query: 164 GLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDML 223
GL+ + D +SGG+++RV + + DP +L++DEP LD + Q+ + +
Sbjct: 122 GLDP---SEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEI 178
Query: 224 KVMAETRGRTVILSIH 239
K + + G+T++ H
Sbjct: 179 KELQKELGKTIVFVTH 194
|
Length = 309 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 1e-27
Identities = 54/193 (27%), Positives = 97/193 (50%), Gaps = 20/193 (10%)
Query: 59 RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVS 118
++ VS + +P EI+ ++GP+GAGK++L ++ G P SG+ G I +++
Sbjct: 18 TAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIA 77
Query: 119 ----GYVTQRDTLFPLLTVEETLMFSAKLRLRLP-----------QAQLRARVKSLVKEL 163
Q LFP LTV E + A RL L + + R R + L++ +
Sbjct: 78 RLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFV 137
Query: 164 GLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDML 223
GL +A D +S G++RR+ I + PK+L+LDEP +GL+ ++ +++
Sbjct: 138 GLGELA-----DRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELI 192
Query: 224 KVMAETRGRTVIL 236
+ + + G T++L
Sbjct: 193 RELRDRGGVTILL 205
|
Length = 250 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 2e-27
Identities = 67/195 (34%), Positives = 105/195 (53%), Gaps = 10/195 (5%)
Query: 72 EILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQF--RKVSGYVTQRDTLFP 129
EI AIVGPSG+GKS+LL ++AG TPQSG +NG + A R VS + Q + LF
Sbjct: 25 EITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVS-MLFQENNLFA 83
Query: 130 LLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRV 189
LTVE+ + L+L A+ R ++ + +GL + R +SGGER+RV
Sbjct: 84 HLTVEQNVGLGLSPGLKL-TAEDRQAIEVALARVGLAGL-EKR----LPGELSGGERQRV 137
Query: 190 SIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMF 249
++ ++ D VL+LDEP + LD +++D++ + TV++ HQP ++
Sbjct: 138 ALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPE-DAKRLA 196
Query: 250 NSILMLANGSVLHHG 264
++ L NG + G
Sbjct: 197 QRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 2e-27
Identities = 68/209 (32%), Positives = 105/209 (50%), Gaps = 10/209 (4%)
Query: 64 VSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNG-SPIDKAQ-FRKVSGYV 121
+S + EI+ +G +GAGKS+ L++L G L P SG VNG P + + + + G V
Sbjct: 43 ISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLV 102
Query: 122 T-QRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRG 180
Q+ L+ L ++L KL +P + R+ L + L LE VR
Sbjct: 103 MGQKLQLWWDLPALDSLEV-LKLIYEIPDDEFAERLDFLTEILDLEGFL-----KWPVRK 156
Query: 181 ISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQ 240
+S G+R R + ++H PKVL LDEPT GLD + I + LK E R TV+L+ H
Sbjct: 157 LSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHI 216
Query: 241 PGFRIVKMFNSILMLANGSVLHHGTVDLL 269
I + + +L++ G ++ GT+ L
Sbjct: 217 FD-DIATLCDRVLLIDQGQLVFDGTLAQL 244
|
Length = 325 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 2e-27
Identities = 67/233 (28%), Positives = 117/233 (50%), Gaps = 20/233 (8%)
Query: 53 DSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGS----- 107
GV + +DGVS + K EIL IVG SG+GKS L + + G L P+ + V G
Sbjct: 13 TDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMG-LLPKPNARIVGGEILFDG 71
Query: 108 ----PIDKAQFRKVSG----YVTQ--RDTLFPLLTVEETLMFSAKLRLRLP-QAQLRARV 156
+ + + RK+ G + Q +L P++T+ + + +L + + + + R
Sbjct: 72 KDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERA 131
Query: 157 KSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSA 216
L++ +G+ R +SGG R+RV I + +PK+LI DEPT+ LD T
Sbjct: 132 IELLELVGIPDPE--RRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQ 189
Query: 217 LQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLL 269
QI+D+LK + +G +IL H G + ++ + + ++ G ++ G V+ +
Sbjct: 190 AQILDLLKELQREKGTALILITHDLGV-VAEIADRVAVMYAGRIVEEGPVEEI 241
|
Length = 316 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 3e-27
Identities = 63/216 (29%), Positives = 111/216 (51%), Gaps = 15/216 (6%)
Query: 47 KLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNG 106
+LE G LD ++ E + ++GPSG GK++ L ++AG P SG ++ G
Sbjct: 2 ELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGG 61
Query: 107 SPIDK--AQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELG 164
+ + R + V Q L+P +TV + + F KLR ++P+ ++ RV+ + + L
Sbjct: 62 RDVTDLPPKDRDI-AMVFQNYALYPHMTVYDNIAFGLKLR-KVPKDEIDERVREVAELLQ 119
Query: 165 LEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLK 224
+EH+ D + + +SGG+R+RV++G ++ +PKV ++DEP S LD+ +Q+ LK
Sbjct: 120 IEHLL-----DRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELK 174
Query: 225 VMAETRGRTVILSIHQP------GFRIVKMFNSILM 254
+ + G T I H RI M + +
Sbjct: 175 RLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQ 210
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 4e-27
Identities = 76/222 (34%), Positives = 116/222 (52%), Gaps = 21/222 (9%)
Query: 59 RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQ----F 114
L+ VS + + E L IVG SG+GKS+L +LAG P SGS ++G P+ + F
Sbjct: 21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAF 80
Query: 115 RKVSGYVTQRD---TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGL-EHVAM 170
+ V Q D +L P TV L + L ++Q R L+ ++GL
Sbjct: 81 YRPVQMVFQ-DPYSSLNPRRTVGRILSEPLRP-HGLSKSQQRIA--ELLDQVGLPPSFL- 135
Query: 171 ARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETR 230
D R +SGG+R+R++I +I +PK+LILDEPTS LD + QI+++L + + R
Sbjct: 136 ----DRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKER 191
Query: 231 GRTVILSIHQPGFRIV-KMFNSILMLANGSVLHHG-TVDLLS 270
G T + H +V M + I ++ NG ++ G T +LLS
Sbjct: 192 GLTYLFISHD--LALVEHMCDRIAVMDNGQIVEIGPTEELLS 231
|
Length = 252 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 4e-27
Identities = 66/236 (27%), Positives = 116/236 (49%), Gaps = 16/236 (6%)
Query: 41 AQEELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSG 100
E+S + + L ++ K ++ A+VG SGAGKS+LL +L G L P G
Sbjct: 317 PPIEISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQG 376
Query: 101 STFVNGSP---IDKAQFRKVSGYVTQRDTLFPLLTVEETLMF--SAKLRLRLPQAQLRAR 155
VNG + +RK +V+Q LF T+ E ++ + A +A
Sbjct: 377 EIRVNGIDLRDLSPEAWRKQISWVSQNPYLFA-GTIRENILLARPDASDEEIIAALDQAG 435
Query: 156 VKSLV-KELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDST 214
+ V K GL+ V +G + G+SGG+ +R+++ ++ +L+LDEPT+ LD+
Sbjct: 436 LLEFVPKPDGLDTV----IG-EGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAE 490
Query: 215 SALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270
+ I+ L+ +A + +TV++ H+ + I++L NG ++ GT + LS
Sbjct: 491 TEQIILQALQELA--KQKTVLVITHRL-EDAADA-DRIVVLDNGRLVEQGTHEELS 542
|
Length = 559 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 108 bits (273), Expect = 7e-27
Identities = 65/214 (30%), Positives = 106/214 (49%), Gaps = 13/214 (6%)
Query: 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-AQFRKVS 118
+L GVS EI+A++G +GAGK++LL+ + G L P+SGS +G I +
Sbjct: 15 ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERAR 74
Query: 119 ---GYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGD 175
GYV + +FP LTVEE L+ A R R + RV L L
Sbjct: 75 AGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRL-------KERRK 127
Query: 176 DRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVI 235
+SGGE++ ++I ++ PK+L+LDEP+ GL +I + ++ + + G T++
Sbjct: 128 QLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRD-EGVTIL 186
Query: 236 LSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLL 269
L + Q +++ + +L G V+ GT L
Sbjct: 187 L-VEQNARFALEIADRAYVLERGRVVLEGTAAEL 219
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 1e-26
Identities = 58/198 (29%), Positives = 95/198 (47%), Gaps = 17/198 (8%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFR 115
G R + G+S E L + GP+G+GK++LL ++AG L P +G+ ++G ID
Sbjct: 13 GGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVA 72
Query: 116 KVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGD 175
+ Y+ R+ + P LTV E L F A A LE V +A +
Sbjct: 73 EACHYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAA----------LEAVGLAPLAH 122
Query: 176 DRVRGISGGERRRVSIG-FDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTV 234
+S G++RRV++ V + P + ILDEPT+ LD+ + ++++ +G V
Sbjct: 123 LPFGYLSAGQKRRVALARLLVSNRP-IWILDEPTAALDAAAVALFAELIRAHLA-QGGIV 180
Query: 235 ILSIHQP----GFRIVKM 248
I + H P G R + +
Sbjct: 181 IAATHIPLGLPGARELDL 198
|
Length = 207 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 1e-26
Identities = 87/269 (32%), Positives = 145/269 (53%), Gaps = 29/269 (10%)
Query: 54 SDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKA- 112
SDG L G++ K E+ AI+G +GAGKS+L + L G L P SG +G PID +
Sbjct: 16 SDGTH-ALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSR 74
Query: 113 ----QFRKVSGYVTQR--DTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLE 166
+ R+ G V Q + LF +V + + F A + L+LP+ ++R RV + +K G+E
Sbjct: 75 KGLMKLRESVGMVFQDPDNQLFSA-SVYQDVSFGA-VNLKLPEDEVRKRVDNALKRTGIE 132
Query: 167 HVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVM 226
H+ D +S G+++RV+I ++ +PKVL+LDEPT+GLD +I+ +L M
Sbjct: 133 HLK-----DKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEM 187
Query: 227 AETRGRTVILSIHQPGFRIVKMF-NSILMLANGSVLHHGTVDLLSVS---LRMMGLQLPM 282
+ G T+I++ H IV ++ +++ ++ G V+ G + LR + L+LP
Sbjct: 188 QKELGLTIIIATHD--IDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEMLRKVNLRLPR 245
Query: 283 HVNVVE-------FAIESIDL-IQEQRKI 303
+++E F + +DL I + RK
Sbjct: 246 IGHLMEILKEKDGFVFDELDLTISQARKT 274
|
Length = 283 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 2e-26
Identities = 68/221 (30%), Positives = 113/221 (51%), Gaps = 33/221 (14%)
Query: 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNG---SPIDKAQFRK 116
VL+ +S + P E +AIVG SG+GKS+LL++L G PQ G ++G + ID A R+
Sbjct: 488 VLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRR 547
Query: 117 VSGYVTQRDTLF------------PLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELG 164
GYV Q LF P T EE ++ +A+L A +++L +G
Sbjct: 548 QVGYVLQDPFLFSGSIRENIALGNPEATDEE-IIEAAQL------AGAHEFIENL--PMG 598
Query: 165 LEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLK 224
+ +SGG+R+R+++ ++ PK+L+LDE TS LD + I+ L
Sbjct: 599 YDTPVGEGGA-----NLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLL 653
Query: 225 VMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGT 265
+ +GRTVI+ H+ ++ + I++L G ++ G+
Sbjct: 654 QIL--QGRTVIIIAHRL--STIRSADRIIVLDQGKIVEQGS 690
|
Length = 709 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 3e-26
Identities = 70/203 (34%), Positives = 105/203 (51%), Gaps = 35/203 (17%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---- 111
G R +LD VS +P E++AI+GP+GAGKS+LL L+G+L+P SG +NG P+
Sbjct: 13 GGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPA 72
Query: 112 --AQFRKVSGYVTQRDTL-FPLLTVEETLMFSAKLRL-RLPQAQLRARVKSLVKELGLEH 167
A+ R V + Q +L FP TVEE + + R P RA +LV
Sbjct: 73 ELARRRAV---LPQHSSLSFP-FTVEEV------VAMGRAPHGLSRAEDDALVAA----- 117
Query: 168 VAMARVG-----DDRVRGISGGERRRVSIG------FDVIHDPKVLILDEPTSGLDSTSA 216
A+A+V +SGGE++RV + ++ P+ L+LDEPTS LD
Sbjct: 118 -ALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQ 176
Query: 217 LQIIDMLKVMAETRGRTVILSIH 239
++ + + +A RG VI+ +H
Sbjct: 177 HHVLRLARQLAHERGLAVIVVLH 199
|
Length = 258 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 5e-26
Identities = 72/225 (32%), Positives = 110/225 (48%), Gaps = 23/225 (10%)
Query: 55 DGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI---DK 111
D + VL ++ KP E +AIVGP+GAGK++L+ +L PQ G ++G I +
Sbjct: 13 DEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISR 72
Query: 112 AQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMA 171
R + G V Q LF T+M +RL P A V KE G M
Sbjct: 73 KSLRSMIGVVLQDTFLFS-----GTIM--ENIRLGRPNAT-DEEVIEAAKEAGAHDFIMK 124
Query: 172 RVGD------DRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIID-MLK 224
+ +S GER+ ++I ++ DPK+LILDE TS +D+ + I + + K
Sbjct: 125 LPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEK 184
Query: 225 VMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLL 269
+M +GRT I+ H+ +K + IL+L +G ++ GT D L
Sbjct: 185 LM---KGRTSIIIAHRLS--TIKNADKILVLDDGKIIEEGTHDEL 224
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 6e-26
Identities = 62/168 (36%), Positives = 94/168 (55%), Gaps = 9/168 (5%)
Query: 47 KLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNG 106
+LE + G LDGVS K E ++GPSG GK++LL ++AG TP SG ++G
Sbjct: 2 ELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDG 61
Query: 107 SPIDK--AQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELG 164
I R V V Q LFP LTV E + F +L+ +LP+A+++ RV
Sbjct: 62 KDITNLPPHKRPV-NTVFQNYALFPHLTVFENIAFGLRLK-KLPKAEIKERVAEA----- 114
Query: 165 LEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLD 212
L+ V + + + +SGG+++RV+I ++++PKVL+LDEP LD
Sbjct: 115 LDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALD 162
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 6e-26
Identities = 74/221 (33%), Positives = 118/221 (53%), Gaps = 16/221 (7%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGS-------P 108
G + L ++ E L ++GPSGAGKSSLL +L P+SG+ + G+ P
Sbjct: 13 GAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTP 72
Query: 109 IDKA--QFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLE 166
DKA R+ G V Q+ L+P LTV+E L+ + L L + Q AR + L+K L L+
Sbjct: 73 SDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLK 132
Query: 167 HVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVM 226
A D +SGG+++RV+I ++ +P+VL+ DEPT+ LD QI+ ++K +
Sbjct: 133 PYA-----DRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKEL 187
Query: 227 AETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVD 267
AET G T ++ H+ K + ++ + NG ++ G
Sbjct: 188 AET-GITQVIVTHEVEV-ARKTASRVVYMENGHIVEQGDAS 226
|
Length = 242 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 7e-26
Identities = 70/215 (32%), Positives = 114/215 (53%), Gaps = 13/215 (6%)
Query: 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNG---SPIDKAQFRK 116
+LD +S + KP E++ IVG SG+GKS+L +++ P++G V+G + D A R+
Sbjct: 17 ILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRR 76
Query: 117 VSGYVTQRDTLFPLLTVEE-TLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGD 175
G V Q + LF + L R+ +A A + EL + + VG+
Sbjct: 77 QVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTI--VGE 134
Query: 176 DRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQII-DMLKVMAETRGRTV 234
G+SGG+R+R++I +IH+P++LI DE TS LD S I+ +M + A GRTV
Sbjct: 135 QGA-GLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA---GRTV 190
Query: 235 ILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLL 269
I+ H+ VK + I+++ G ++ G+ D L
Sbjct: 191 IIIAHR--LSTVKNADRIIVMEKGRIVEQGSHDEL 223
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 7e-26
Identities = 60/190 (31%), Positives = 101/190 (53%), Gaps = 9/190 (4%)
Query: 51 AADSDGV-RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI 109
+ +G R L+ VS E++ ++GPSG GK++LL ++AG +TP GS +NG I
Sbjct: 10 SLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRI 69
Query: 110 DKAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVA 169
+ + G V Q + L P L V + + F +LR + +AQ R ++ +GLE
Sbjct: 70 EGPGAER--GVVFQNEALLPWLNVIDNVAFGLQLR-GIEKAQRREIAHQMLALVGLEG-- 124
Query: 170 MARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAET 229
+ +SGG R+RV I + +P++L+LDEP LD+ + Q+ ++L + +
Sbjct: 125 ---AEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQE 181
Query: 230 RGRTVILSIH 239
G+ V+L H
Sbjct: 182 TGKQVLLITH 191
|
Length = 259 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 3e-25
Identities = 66/218 (30%), Positives = 120/218 (55%), Gaps = 14/218 (6%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI---DKA 112
G ++ ++ ++ + E L ++GPSG+GK++ ++++ + P SG F++G I D
Sbjct: 12 GGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPV 71
Query: 113 QFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMAR 172
+ R+ GYV Q+ LFP +TVEE + KL L+ P+ ++R R L+ +GL+ A
Sbjct: 72 ELRRKIGYVIQQIGLFPHMTVEENIALVPKL-LKWPKEKIRERADELLALVGLDPAEFA- 129
Query: 173 VGDDRV-RGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRG 231
DR +SGG+++RV + + DP +L++DEP LD + Q+ + K + + G
Sbjct: 130 ---DRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELG 186
Query: 232 RTVILSIH--QPGFRIVKMFNSILMLANGSVLHHGTVD 267
+T++ H FR+ + I ++ NG ++ GT D
Sbjct: 187 KTIVFVTHDIDEAFRLA---DRIAIMKNGEIVQVGTPD 221
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 5e-25
Identities = 62/177 (35%), Positives = 102/177 (57%), Gaps = 15/177 (8%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFR 115
G R+V++GVS K EI+ ++GP+GAGK++ ++ G + P SG ++G I K
Sbjct: 11 GKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMH 70
Query: 116 KVS----GYVTQRDTLFPLLTVEETLMFSAKLRLR-LPQAQLRARVKSLVKELGLEHVAM 170
K + GY+ Q ++F LTVEE ++ A L +R L + + +++ L++E + H+
Sbjct: 71 KRARLGIGYLPQEASIFRKLTVEENIL--AVLEIRGLSKKEREEKLEELLEEFHITHLR- 127
Query: 171 ARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLD--STSALQ-IIDMLK 224
+ +SGGERRRV I + +PK L+LDEP +G+D + +Q II +LK
Sbjct: 128 ----KSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILK 180
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 5e-25
Identities = 66/220 (30%), Positives = 109/220 (49%), Gaps = 17/220 (7%)
Query: 58 RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKA----Q 113
+++L +S + P E AIVGP+GAGK++LL +L G+ P SG + G K +
Sbjct: 44 KKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFE 103
Query: 114 FRKVSGYVT--QRDTLFPLLTVEETLM---FSAKLRLRLP-QAQLRARVKSLVKELGLEH 167
RK G V+ + TV + ++ F++ + A+ A + L++ LG +H
Sbjct: 104 LRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKH 163
Query: 168 VAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDML-KVM 226
+A D +S GE+RRV I ++ DP++LILDEP GLD + Q+++ L ++
Sbjct: 164 LA-----DRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELA 218
Query: 227 AETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTV 266
A ++ H I F L+L G V+ G +
Sbjct: 219 ASPGAPALLFVTHHAE-EIPPCFTHRLLLKEGEVVAQGKL 257
|
Length = 257 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 8e-25
Identities = 65/189 (34%), Positives = 101/189 (53%), Gaps = 15/189 (7%)
Query: 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNG---SPIDKAQFRK 116
LD VS +P E +AI+G G+GKS+LL++L G P GS ++G ID A R+
Sbjct: 480 ALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRR 539
Query: 117 VSGYVTQRDTLFPLLTVEETLMFSAKL--RLRLPQAQLRARVKSLVKEL--GLEHVAMAR 172
GYV Q LF T+ + + A + +A A V V+ GL+ +
Sbjct: 540 NIGYVPQDPRLF-YGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDM----Q 594
Query: 173 VGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGR 232
+G+ R R +SGG+R+ V++ ++ DP +L+LDEPTS +D+ S + D LK G+
Sbjct: 595 IGE-RGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLK--RWLAGK 651
Query: 233 TVILSIHQP 241
T++L H+
Sbjct: 652 TLVLVTHRT 660
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 9e-25
Identities = 61/235 (25%), Positives = 115/235 (48%), Gaps = 24/235 (10%)
Query: 72 EILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGS-----------PIDKAQFRKVSGY 120
+ AI G SG+GK++L+ ++AG P G +NG P +K R++ GY
Sbjct: 24 GVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEK---RRI-GY 79
Query: 121 VTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRG 180
V Q LFP L+V L + K R ++ R + +++ LG+ H+ G
Sbjct: 80 VFQEARLFPHLSVRGNLRYGMK---RARPSERRISFERVIELLGIGHLLGRLPGR----- 131
Query: 181 ISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQ 240
+SGGE++RV+IG ++ P++L++DEP + LD +I+ L+ + G ++ H
Sbjct: 132 LSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHS 191
Query: 241 PGFRIVKMFNSILMLANGSVLHHGTVDLLSVSLRMMGLQLPMHVNVVEFAIESID 295
++++ + +++L +G V G + + S + L +++E + D
Sbjct: 192 LQ-EVLRLADRVVVLEDGRVAAAGPIAEVWASPDLPWLAREDQGSLIEGVVAEHD 245
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 1e-24
Identities = 60/168 (35%), Positives = 100/168 (59%), Gaps = 9/168 (5%)
Query: 48 LEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGS 107
+ + G + LD V+ + ++A++GPSG+GKS+LL I+AG P SG +NG
Sbjct: 3 IANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQ 62
Query: 108 PID--KAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGL 165
A+ RK+ G+V Q LF LTV + + F ++R + P+A+++ARV+ L++ + L
Sbjct: 63 DATRVHARDRKI-GFVFQHYALFKHLTVRDNIAFGLEIR-KHPKAKIKARVEELLELVQL 120
Query: 166 EHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDS 213
E +GD +SGG+R+RV++ + +P+VL+LDEP LD+
Sbjct: 121 EG-----LGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDA 163
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 1e-24
Identities = 67/197 (34%), Positives = 109/197 (55%), Gaps = 15/197 (7%)
Query: 51 AADSDGVRR------VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFV 104
A D GV + V++G+S E ++GP+GAGKS++ ++ G +P +G V
Sbjct: 41 AIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITV 100
Query: 105 NGSPI-DKAQF-RKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKE 162
G P+ +A+ R G V Q D L TV E L+ + + ++ A + SL++
Sbjct: 101 LGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRY-FGMSTREIEAVIPSLLEF 159
Query: 163 LGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDM 222
LE A ARV D +SGG +RR+++ +I+DP++LILDEPT+GLD + I +
Sbjct: 160 ARLESKADARVSD-----LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWER 214
Query: 223 LKVMAETRGRTVILSIH 239
L+ + RG+T++L+ H
Sbjct: 215 LRSLL-ARGKTILLTTH 230
|
Length = 340 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 1e-24
Identities = 57/189 (30%), Positives = 86/189 (45%), Gaps = 14/189 (7%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKA--Q 113
G R + +S E L I GP+GAGK++LL ILAG L P +G + G PI
Sbjct: 13 GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRES 72
Query: 114 FRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARV 173
+ + Y+ + + LT E L F + A + L V +A +
Sbjct: 73 YHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWE---------ALAQVGLAGL 123
Query: 174 GDDRVRGISGGERRRVSIGFDVIHDPKVL-ILDEPTSGLDSTSALQIIDMLKVMAETRGR 232
D V +S G++RRV++ + P L ILDEP + LD + ++ L +G
Sbjct: 124 EDLPVGQLSAGQQRRVALA-RLWLSPAPLWILDEPFTALDK-EGVALLTALMAAHAAQGG 181
Query: 233 TVILSIHQP 241
V+L+ HQP
Sbjct: 182 IVLLTTHQP 190
|
Length = 209 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 2e-24
Identities = 63/189 (33%), Positives = 99/189 (52%), Gaps = 15/189 (7%)
Query: 58 RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNG---SPIDKAQF 114
R L VS E + + GPSGAGKS+LL+++ G+ P G VNG S + +
Sbjct: 15 REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREI 74
Query: 115 ---RKVSGYVTQRDTLFPLLTVEETLMFSAKLRLR-LPQAQLRARVKSLVKELGLEHVAM 170
R+ G V Q L P TV E + LR+ P ++R RV ++ +GL+H
Sbjct: 75 PFLRRQIGVVFQDFRLLPDRTVYENVALP--LRVIGKPPREIRRRVSEVLDLVGLKH--K 130
Query: 171 ARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETR 230
AR + +SGGE++RV+I +++ P VL+ DEPT LD + +I+ + + +
Sbjct: 131 ARALPSQ---LSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINR-L 186
Query: 231 GRTVILSIH 239
G TV+++ H
Sbjct: 187 GTTVLMATH 195
|
Length = 223 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 101 bits (252), Expect = 3e-24
Identities = 57/190 (30%), Positives = 104/190 (54%), Gaps = 8/190 (4%)
Query: 72 EILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNG-SPIDKAQFRKVSGYVTQRDTLFPL 130
EI+AI+GPSGAGKS+LL ++AG + P SGS VN S A +++ + Q + LF
Sbjct: 25 EIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAH 84
Query: 131 LTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVS 190
LTV + + L+L Q + +V +++G+ + R+ + +SGG+R+RV+
Sbjct: 85 LTVRQNIGLGLHPGLKLNAEQ-QEKVVDAAQQVGIADY-LDRLPEQ----LSGGQRQRVA 138
Query: 191 IGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFN 250
+ ++ +L+LDEP S LD +++ ++K + R RT+++ H + +
Sbjct: 139 LARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS-DARAIAS 197
Query: 251 SILMLANGSV 260
I +++ G +
Sbjct: 198 QIAVVSQGKI 207
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 4e-24
Identities = 65/226 (28%), Positives = 110/226 (48%), Gaps = 29/226 (12%)
Query: 58 RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQF 114
RR+LDGVS +P E+LAI+GP+GAGKS+LL+ L+G+L+P SG +NG P++ +
Sbjct: 14 RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEEL 73
Query: 115 RKVSGYVTQRDTL-FPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARV 173
+ + Q +L FP TV+E + R+ + + + + A+A
Sbjct: 74 ARHRAVLPQNSSLAFP-FTVQEVVQMG---RIPHRSGREPEEDERIAAQ------ALAAT 123
Query: 174 GDDR-----VRGISGGERRRVSIG------FDVIHDPKVLILDEPTSGLDSTSALQIIDM 222
R +SGGE++RV + + + + L LDEPTS LD + +
Sbjct: 124 DLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRL 183
Query: 223 LKVMAETRGRTVILSIHQPGFRIVKMF-NSILMLANGSVLHHGTVD 267
+ +A G V+ +H + + + I++L G V+ G+
Sbjct: 184 ARQLAR-EGGAVLAVLHD--LNLAAQYADRIVLLHQGRVIASGSPQ 226
|
Length = 259 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 4e-24
Identities = 70/227 (30%), Positives = 112/227 (49%), Gaps = 41/227 (18%)
Query: 58 RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQ---F 114
R VL VS + +AIVGPSG+GKS++L +L SGS ++G I +
Sbjct: 14 RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSL 73
Query: 115 RKVSGYVTQRDTLF------------PLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKE 162
R+ G V Q LF P T EE + A AQ+ ++
Sbjct: 74 RRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEE--VIEAAK-----AAQIHDKIMRFPD- 125
Query: 163 LGLEHVAMARVGDDRVRG--ISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQII 220
G + + VG+ RG +SGGE++RV+I ++ +P +L+LDE TS LD+ + +I
Sbjct: 126 -GYDTI----VGE---RGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQ 177
Query: 221 DMLKVMAETRGRTVILSIHQPGFRIVKMFNS--ILMLANGSVLHHGT 265
L+ ++ +GRT I+ H R+ + N+ I++L +G ++ GT
Sbjct: 178 AALRDVS--KGRTTIVIAH----RLSTIVNADKIIVLKDGRIVERGT 218
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 98.1 bits (245), Expect = 1e-23
Identities = 61/213 (28%), Positives = 88/213 (41%), Gaps = 56/213 (26%)
Query: 54 SDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI---D 110
VL VS +P E LAI+GPSG+GKS+L ++ G L P SG ++G+ I D
Sbjct: 11 PGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWD 70
Query: 111 KAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAM 170
+ GY+ Q D LF E L
Sbjct: 71 PNELGDHVGYLPQDDELFSGSIAENIL--------------------------------- 97
Query: 171 ARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDST---SALQIIDMLKVMA 227
SGG+R+R+ + + +P++L+LDEP S LD + Q I LK
Sbjct: 98 -----------SGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKA-- 144
Query: 228 ETRGRTVILSIHQPGFRIVKMFNSILMLANGSV 260
G T I+ H+P + + IL+L +G V
Sbjct: 145 --AGATRIVIAHRP--ETLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 98.5 bits (246), Expect = 2e-23
Identities = 57/207 (27%), Positives = 110/207 (53%), Gaps = 16/207 (7%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNG---SPIDKA 112
G + +LD ++ + ++ AI+G SG+GKS+LL I+ SG ++NG P++
Sbjct: 9 GDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSK 68
Query: 113 Q----FRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHV 168
+ R+ GY+ Q L TVEE L K + +L + + R + K ++++GL
Sbjct: 69 KASKFRREKLGYLFQNFALIENETVEENLDLGLKYK-KLSKKEKREKKKEALEKVGLNLK 127
Query: 169 AMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAE 228
++ +SGGE++RV++ ++ P +++ DEPT LD + +++D+L + +
Sbjct: 128 L-----KQKIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELND 182
Query: 229 TRGRTVILSIHQPGFRIVKMFNSILML 255
G+T+I+ H P + K + ++ L
Sbjct: 183 -EGKTIIIVTHDP--EVAKQADRVIEL 206
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 97.4 bits (243), Expect = 2e-23
Identities = 54/207 (26%), Positives = 93/207 (44%), Gaps = 47/207 (22%)
Query: 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQ--FRKV 117
VL +S + K E +A++G SG+GKS+LL++L G L PQ G ++G P+ + +
Sbjct: 17 VLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSL 76
Query: 118 SGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDR 177
+ QR LF + TL + R
Sbjct: 77 ISVLNQRPYLF-----DTTLRNNLGRRF-------------------------------- 99
Query: 178 VRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILS 237
SGGER+R+++ ++ D +++LDEPT GLD + Q++ + + + +T+I
Sbjct: 100 ----SGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSL--IFEVLKDKTLIWI 153
Query: 238 IHQPGFRIVKMFNSILMLANGSVLHHG 264
H ++ + IL L NG ++ G
Sbjct: 154 THH--LTGIEHMDKILFLENGKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 2e-23
Identities = 62/213 (29%), Positives = 104/213 (48%), Gaps = 9/213 (4%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFR 115
G VLDGV + ++ +VGP+GAGK++LL + G LTP +G+ V G ++ R
Sbjct: 14 GDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSAR 73
Query: 116 KVS---GYVTQRDTLFPLLTVEETL-MFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMA 171
S V Q +L V + + M R R R E +E +A
Sbjct: 74 AASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRA---AVERAMERTGVA 130
Query: 172 RVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRG 231
+ D V +SGGER+RV + + VL+LDEPT+ LD ++ +++++ + + G
Sbjct: 131 QFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDD-G 189
Query: 232 RTVILSIHQPGFRIVKMFNSILMLANGSVLHHG 264
+T + +IH + + +++LA+G V G
Sbjct: 190 KTAVAAIHDLDL-AARYCDELVLLADGRVRAAG 221
|
Length = 402 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 99.0 bits (247), Expect = 2e-23
Identities = 59/161 (36%), Positives = 93/161 (57%), Gaps = 13/161 (8%)
Query: 59 RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK--AQFRK 116
LD VS E++A++GPSG+GK++LL ++AG P SG+ G Q R
Sbjct: 16 VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERN 75
Query: 117 VSGYVTQRDTLFPLLTVEETLMFSAKLR---LRLPQAQLRARVKSLVKELGLEHVAMARV 173
V G+V Q LF +TV + + F +++ R P+A++RA+V L+K + L+ +A
Sbjct: 76 V-GFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLA---- 130
Query: 174 GDDRVRG-ISGGERRRVSIGFDVIHDPKVLILDEPTSGLDS 213
DR +SGG+R+RV++ + +PKVL+LDEP LD+
Sbjct: 131 --DRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDA 169
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 98.8 bits (247), Expect = 3e-23
Identities = 58/220 (26%), Positives = 101/220 (45%), Gaps = 23/220 (10%)
Query: 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-AQFRKVS 118
+L GVS + E+ ++G +G GK++LL+ L G L +SGS ++G I K +
Sbjct: 15 ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERAR 74
Query: 119 ---GYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLE-----HVAM 170
YV Q +FP LTVEE L+ R + + E +
Sbjct: 75 AGIAYVPQGREIFPRLTVEENLLTG---------LAALPRRSRKIPDEIYELFPVLKEML 125
Query: 171 ARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETR 230
R G D +SGG++++++I ++ PK+L+LDEPT G+ + I +++ +
Sbjct: 126 GRRGGD----LSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEG 181
Query: 231 GRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270
G ++L F ++ + ++ G V+ G D L
Sbjct: 182 GMAILLVEQYLDF-ARELADRYYVMERGRVVASGAGDELD 220
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 3e-23
Identities = 54/213 (25%), Positives = 102/213 (47%), Gaps = 9/213 (4%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQ--SGSTFVNGSPIDKA- 112
G VLD +S + + E+LA++G SG GK++LL +AG + +G + + A
Sbjct: 16 GANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAP 75
Query: 113 QFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMAR 172
++ + Q LFP L VE+ + F + + ++P+A + RV +K +G +
Sbjct: 76 PHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ-KMPKADIAERVADALKLVG-----LGD 129
Query: 173 VGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGR 232
+SGG ++R++I + +P VL+LDEP S LD+ + + + + E
Sbjct: 130 AAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPE 189
Query: 233 TVILSIHQPGFRIVKMFNSILMLANGSVLHHGT 265
IL + + + + ++ +G + HG
Sbjct: 190 LTILCVTHDQDDALTLADKAGIMKDGRLAAHGE 222
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 4e-23
Identities = 62/191 (32%), Positives = 101/191 (52%), Gaps = 8/191 (4%)
Query: 76 IVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI-DKAQFRKVSGYVTQRDTLFPLLTVE 134
++GPSG GK++LL +LAG P SGS ++G + + + V Q LFP +TVE
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVE 60
Query: 135 ETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFD 194
E + F K+R ++P+A+++ RV L V + D + +SGG+++RV++
Sbjct: 61 ENVAFGLKMR-KVPRAEIKPRVLEA-----LRLVQLEEFADRKPHQLSGGQQQRVALARA 114
Query: 195 VIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILM 254
++ PK+L+LDEP S LD Q+ LK + E G T + H + M + I +
Sbjct: 115 LVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQE-EAMTMSDRIAI 173
Query: 255 LANGSVLHHGT 265
+ G + GT
Sbjct: 174 MRKGKIAQIGT 184
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 98.6 bits (246), Expect = 5e-23
Identities = 58/189 (30%), Positives = 103/189 (54%), Gaps = 11/189 (5%)
Query: 52 ADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK 111
AD G + L+ ++ + E+L ++GPSG GK++LL ++AG + Q GS ++G P++
Sbjct: 9 ADYGG-KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEG 67
Query: 112 AQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMA 171
+ G V Q + L P V++ + F +L + + Q ++K++GLE
Sbjct: 68 PGAER--GVVFQNEGLLPWRNVQDNVAFGLQLA-GVEKMQRLEIAHQMLKKVGLEG---- 120
Query: 172 RVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIID-MLKVMAETR 230
+ +SGG+R+RV I + +P++L+LDEP LD+ + Q+ +LK+ ET
Sbjct: 121 -AEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQET- 178
Query: 231 GRTVILSIH 239
G+ V+L H
Sbjct: 179 GKQVLLITH 187
|
Length = 255 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 6e-23
Identities = 68/216 (31%), Positives = 107/216 (49%), Gaps = 27/216 (12%)
Query: 61 LDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVS-- 118
D VS K EI A++G +GAGKS+L++IL G P SG V+G + + +
Sbjct: 20 NDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEV---RIKSPRDA 76
Query: 119 -----GYVTQRDTLFPLLTVEETLMFSAKLR--LRLPQAQLRARVKSLVKELGLEHVAMA 171
G V Q L P LTV E ++ + + + Q RAR+K L + GL A
Sbjct: 77 IRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDA 136
Query: 172 RVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRG 231
+V D +S GE++RV I + ++LILDEPT+ L A ++ ++L+ +A G
Sbjct: 137 KVAD-----LSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAA-EG 190
Query: 232 RTVILSIHQPGFRIVKMFNSILMLANG-SVLHHGTV 266
+T+I H+ ++ +A+ +VL G V
Sbjct: 191 KTIIFITHK--------LKEVMAIADRVTVLRRGKV 218
|
Length = 501 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 93.5 bits (233), Expect = 8e-23
Identities = 43/129 (33%), Positives = 68/129 (52%), Gaps = 14/129 (10%)
Query: 85 SSLLEILAGKLTPQSGSTFVNGSPI----DKAQFRKVSGYVTQRDTLFPLLTVEETLMFS 140
S+LL+++ G L P SG+ ++G + RK G V Q LFP LTV E L F
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 141 AKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPK 200
L + AR + ++ +GL + + V +SGG+++RV+I ++ PK
Sbjct: 61 ------LRDKEADARAEEALERVGLPD----FLDREPVGTLSGGQKQRVAIARALLKKPK 110
Query: 201 VLILDEPTS 209
+L+LDEPT+
Sbjct: 111 LLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 97.3 bits (243), Expect = 1e-22
Identities = 57/183 (31%), Positives = 104/183 (56%), Gaps = 19/183 (10%)
Query: 58 RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGS-----PIDKA 112
R+V++ VS + EI+ ++GP+GAGK++ ++ G + P SG ++ P+ K
Sbjct: 17 RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHK- 75
Query: 113 QFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLR---LPQAQLRARVKSLVKELGLEHVA 169
+ R GY+ Q ++F LTVE+ +M A L +R L +A+ + + +L++E + H+
Sbjct: 76 RARLGIGYLPQEASIFRKLTVEDNIM--AVLEIREKDLKKAERKEELDALLEEFHITHLR 133
Query: 170 MARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAET 229
D + +SGGERRRV I + +PK ++LDEP +G+D + +ID+ +++
Sbjct: 134 -----DSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIA---VIDIQRIIKHL 185
Query: 230 RGR 232
+ R
Sbjct: 186 KDR 188
|
Length = 243 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 97.4 bits (243), Expect = 1e-22
Identities = 63/225 (28%), Positives = 115/225 (51%), Gaps = 22/225 (9%)
Query: 59 RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNG----SPIDKAQF 114
+ L+ +S P E+ ++GP+GAGK++L++++ GK PQ G +G + + + +
Sbjct: 19 KALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRI 78
Query: 115 -RKVSGYVTQRDTLFPLLTVEETLMFS--------AKLRLRLPQAQLRARVKSLVKELGL 165
R G Q+ T+F LTV E L + A L RL + R R+ L+ +GL
Sbjct: 79 ARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEE-RRRIDELLATIGL 137
Query: 166 EHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKV 225
D +S G+++ + IG + DPK+L+LDEP +G+ + ++LK
Sbjct: 138 GDER-----DRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKS 192
Query: 226 MAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270
+A ++++ H GF + ++ + + +L GSVL G++D +
Sbjct: 193 LA--GKHSILVVEHDMGF-VREIADKVTVLHEGSVLAEGSLDEVQ 234
|
Length = 249 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 95.6 bits (239), Expect = 2e-22
Identities = 58/194 (29%), Positives = 86/194 (44%), Gaps = 28/194 (14%)
Query: 58 RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK--AQFR 115
R + G+S E++ I GP+GAGK+SLL ILAG P +G G PI + ++
Sbjct: 14 RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYH 73
Query: 116 KVSGYVTQRDTLF--------PLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEH 167
+D L+ LT E L F +L L L
Sbjct: 74 --------QDLLYLGHQPGIKTELTALENLRFYQRLHGPGDDEALWE---------ALAQ 116
Query: 168 VAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMA 227
V +A D VR +S G++RRV++ + + ILDEP + +D ++ +L A
Sbjct: 117 VGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHA 176
Query: 228 ETRGRTVILSIHQP 241
E +G VIL+ HQ
Sbjct: 177 E-QGGMVILTTHQD 189
|
Length = 204 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 96.2 bits (240), Expect = 2e-22
Identities = 69/212 (32%), Positives = 118/212 (55%), Gaps = 23/212 (10%)
Query: 68 AKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNG-----SPIDKAQFRKVSGYVT 122
+ E +AI+GPSGAGKS+LL ++AG LTP SGS +NG +P + R VS +
Sbjct: 22 VERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSR---RPVS-MLF 77
Query: 123 QRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRG-I 181
Q + LF LTV + + L+L AQ R ++ ++ +++G+E + R+ G +
Sbjct: 78 QENNLFSHLTVAQNIGLGLNPGLKLNAAQ-REKLHAIARQMGIEDLL------ARLPGQL 130
Query: 182 SGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQ- 240
SGG+R+RV++ ++ + +L+LDEP S LD +++ ++ + + R T+++ H
Sbjct: 131 SGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSL 190
Query: 241 -PGFRIVKMFNSILMLANGSVLHHG-TVDLLS 270
RI L++A+G + G T +LLS
Sbjct: 191 EDAARIAPRS---LVVADGRIAWDGPTDELLS 219
|
Length = 232 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 2e-22
Identities = 63/172 (36%), Positives = 100/172 (58%), Gaps = 12/172 (6%)
Query: 72 EILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKA--QFRKVSGYVTQRDTLFP 129
+I A +G +GAGK++ L IL G L P SG+ V G I+ R+ G Q + LF
Sbjct: 957 QITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFH 1016
Query: 130 LLTVEETLMFSAKLRLR-LPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRR 188
LTV E ++F A+L+ R +AQL +++++++ GL H ++ + +SGG +R+
Sbjct: 1017 HLTVAEHILFYAQLKGRSWEEAQLE--MEAMLEDTGLHHKR-----NEEAQDLSGGMQRK 1069
Query: 189 VSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQ 240
+S+ + D KV++LDEPTSG+D S I D+L + GRT+I+S H
Sbjct: 1070 LSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLL--LKYRSGRTIIMSTHH 1119
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 3e-22
Identities = 60/191 (31%), Positives = 91/191 (47%), Gaps = 25/191 (13%)
Query: 59 RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVS 118
+ LDGVS +P E+ A++G +GAGKS+L++IL+G P SG ++G P+ F
Sbjct: 22 KALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPV---AFSSPR 78
Query: 119 -------GYVTQRDTLFPLLTVEETLMFSAKLRLRLP---QAQLRARVKSLVKELGLEHV 168
V Q +L P L+V E + + R + +R R + L+ LGL+
Sbjct: 79 DALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDID 138
Query: 169 AMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSA---LQIIDMLKV 225
VGD +S +R+ V I + D +VLILDEPT+ L +I LK
Sbjct: 139 PDTLVGD-----LSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLK- 192
Query: 226 MAETRGRTVIL 236
+G +I
Sbjct: 193 ---AQGVAIIY 200
|
Length = 500 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 97.0 bits (242), Expect = 3e-22
Identities = 69/218 (31%), Positives = 116/218 (53%), Gaps = 19/218 (8%)
Query: 58 RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI-DK----A 112
++ LD V+ + + E + ++G +G+GKS+L++ L G L P SG ++G I DK +
Sbjct: 20 KKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLS 79
Query: 113 QFRKVSGYVTQ--RDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAM 170
RK G V Q LF T+E+ + F L L + ++ RVK + +GL++
Sbjct: 80 DIRKKVGLVFQYPEYQLFEE-TIEKDIAFGPI-NLGLSEEEIENRVKRAMNIVGLDYEDY 137
Query: 171 ARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETR 230
D +SGG++RRV+I V +PK+LILDEPT+GLD +I++ +K + +
Sbjct: 138 K---DKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEY 194
Query: 231 GRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDL 268
T+IL H + K+ + I+ V++ G +L
Sbjct: 195 NMTIILVSHSME-DVAKLADRII------VMNKGKCEL 225
|
Length = 287 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 95.5 bits (238), Expect = 4e-22
Identities = 72/222 (32%), Positives = 120/222 (54%), Gaps = 18/222 (8%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGS-------P 108
G + L ++ E L ++GPSGAGKSSLL +L P+SG+ + G+ P
Sbjct: 13 GAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTP 72
Query: 109 IDKA--QFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLE 166
DKA + R+ G V Q+ L+P LTV++ L+ + L L + Q AR + L++ L L+
Sbjct: 73 SDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLK 132
Query: 167 HVAMARVGDDRV-RGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKV 225
A DR +SGG+++RV+I ++ +P+VL+ DEPT+ LD QI+ +++
Sbjct: 133 PYA------DRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRE 186
Query: 226 MAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVD 267
+AET G T ++ H+ K + ++ + NG ++ G
Sbjct: 187 LAET-GITQVIVTHEVEV-ARKTASRVVYMENGHIVEQGDAS 226
|
Length = 242 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 95.3 bits (237), Expect = 5e-22
Identities = 59/188 (31%), Positives = 103/188 (54%), Gaps = 14/188 (7%)
Query: 58 RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPID----KAQ 113
RRV++ VS EI+ ++GP+GAGK++ ++ G + +G+ ++ I A+
Sbjct: 16 RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHAR 75
Query: 114 FRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARV 173
R+ GY+ Q ++F L+V + LM ++R L Q R L++E +EH+
Sbjct: 76 ARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLR---- 131
Query: 174 GDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETR--G 231
D + +SGGERRRV I + +PK ++LDEP +G+D S +ID+ +++ R G
Sbjct: 132 -DSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIS---VIDIKRIIEHLRDSG 187
Query: 232 RTVILSIH 239
V+++ H
Sbjct: 188 LGVLITDH 195
|
Length = 241 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 94.8 bits (236), Expect = 5e-22
Identities = 73/218 (33%), Positives = 105/218 (48%), Gaps = 26/218 (11%)
Query: 43 EELSKLEEAADSDGVRR-VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGS 101
E+LSK GVR VL VS E +A+ GPSGAGKS+LL+ L P SG
Sbjct: 5 EDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGR 64
Query: 102 TFVN--GSPIDKAQF---------RKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQA 150
V G+ +D AQ RK GYV+Q + P ++ E + L +P+
Sbjct: 65 ILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPL-LERGVPRE 123
Query: 151 QLRARVKSLVKELG----LEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDE 206
RAR + L+ L L H+ A SGGE++RV+I I D +L+LDE
Sbjct: 124 AARARARELLARLNIPERLWHLPPAT--------FSGGEQQRVNIARGFIADYPILLLDE 175
Query: 207 PTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFR 244
PT+ LD+ + +++++ A+ RG +I H R
Sbjct: 176 PTASLDAANRQVVVELIA-EAKARGAALIGIFHDEEVR 212
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 93.6 bits (233), Expect = 7e-22
Identities = 57/198 (28%), Positives = 88/198 (44%), Gaps = 17/198 (8%)
Query: 48 LEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGS 107
A S G R + +G+S E L + GP+G GK++LL ILAG L P SG NG+
Sbjct: 3 ARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGT 62
Query: 108 PIDK--AQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSL--VKEL 163
+ + + + Y+ L P L+ E L F A + R +L V
Sbjct: 63 ALAEQRDEPHRNILYLGHLPGLKPELSALENLHFWA----AIHGGAQRTIEDALAAVGLT 118
Query: 164 GLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDML 223
G E + +S G++RR+++ + + ILDEPT+ LD + +L
Sbjct: 119 GFEDLP--------AAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLL 170
Query: 224 KVMAETRGRTVILSIHQP 241
+ RG V+L+ HQ
Sbjct: 171 RAHLA-RGGIVLLTTHQD 187
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 93.6 bits (233), Expect = 1e-21
Identities = 55/184 (29%), Positives = 95/184 (51%), Gaps = 12/184 (6%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFR 115
G + ++ +S + ++GP+GAGKS+LL+++ G L P SG +G P +
Sbjct: 11 GKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLH 70
Query: 116 KVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGD 175
K+ G + + L+ LT E L L L LP +R+ ++ + L + +
Sbjct: 71 KI-GSLIESPPLYENLTARENLKVHTTL-LGLPD----SRIDEVLNIVDLTNTGKKKAKQ 124
Query: 176 DRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVI 235
S G ++R+ I +++ PK+LILDEPT+GLD ++ ++++ E +G TVI
Sbjct: 125 -----FSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPE-QGITVI 178
Query: 236 LSIH 239
LS H
Sbjct: 179 LSSH 182
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 98.9 bits (247), Expect = 1e-21
Identities = 73/230 (31%), Positives = 115/230 (50%), Gaps = 19/230 (8%)
Query: 55 DGVRRVLDGVSCKAKPWEILAIVGPSGAGKS----SLLEILAGKLTPQ-SGSTFVNGSPI 109
G + G+S + E LA+VG SG+GKS S+L +L SGS +G +
Sbjct: 20 GGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDL 79
Query: 110 DKA---QFRKVSG----YVTQR--DTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLV 160
A Q R V G + Q +L PL T+ + L +L L +A RAR L+
Sbjct: 80 LAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELL 139
Query: 161 KELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQII 220
+ +G+ R+ D +SGG+R+RV I + ++P +LI DEPT+ LD T QI+
Sbjct: 140 ELVGIPE-PEKRL-DAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQIL 197
Query: 221 DMLKVMAETRGRTVILSIHQPGFRIVKMF-NSILMLANGSVLHHGTVDLL 269
D+LK + G ++ H G IV+ F + + ++ +G ++ GT + L
Sbjct: 198 DLLKELQAELGMAILFITHDLG--IVRKFADRVYVMQHGEIVETGTTETL 245
|
Length = 534 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 96.8 bits (241), Expect = 1e-21
Identities = 64/234 (27%), Positives = 113/234 (48%), Gaps = 23/234 (9%)
Query: 72 EILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI---DKAQFRKVS----GYVTQR 124
EI I+G SG+GKS+ + +L + P +G F++G I + R+V G V Q+
Sbjct: 20 EIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQ 79
Query: 125 DTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGG 184
LFP +T+ + +L L P+ + + + L+K +GLE +SGG
Sbjct: 80 FALFPHMTILQNTSLGPEL-LGWPEQERKEKALELLKLVGLEEYE-----HRYPDELSGG 133
Query: 185 ERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFR 244
++RV + + +P +L++DE S LD + D LK + T +T++ H
Sbjct: 134 MQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLD-E 192
Query: 245 IVKMFNSILMLANGSVLHHGTVDLLSVSLRMMGLQLPMHVNVVEFAIESIDLIQ 298
+++ + I+++ G ++ GT D + L+ P + V EF I +DL Q
Sbjct: 193 AIRIGDRIVIMKAGEIVQVGTPDEI--------LRNPANEYVEEF-IGKVDLSQ 237
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 94.4 bits (235), Expect = 1e-21
Identities = 66/227 (29%), Positives = 117/227 (51%), Gaps = 25/227 (11%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGS-------- 107
G VL GVS +A ++++I+G SG+GKS+ L + P +GS VNG
Sbjct: 17 GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDK 76
Query: 108 -----PIDKAQFRKVS---GYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSL 159
P DK Q +++ G V Q L+ +TV E ++ + L + +A+ R +
Sbjct: 77 DGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKY 136
Query: 160 VKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQI 219
+ ++G+ A A +SGG+++RV+I + +P+V++ DEPTS LD ++
Sbjct: 137 LAKVGIAEKADAYPAH-----LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEV 191
Query: 220 IDMLKVMAETRGRTVILSIHQPGF-RIVKMFNSILMLANGSVLHHGT 265
+ +++ +AE GRT+++ H+ GF R V + ++ L G + G
Sbjct: 192 LKVMQDLAE-EGRTMVVVTHEMGFARDVS--SHVIFLHQGKIEEEGP 235
|
Length = 256 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 98.7 bits (246), Expect = 1e-21
Identities = 70/221 (31%), Positives = 110/221 (49%), Gaps = 23/221 (10%)
Query: 55 DGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI---DK 111
G + VL +S +P E +AIVGPSG+GKS+L+++L P SG ++G I
Sbjct: 339 PGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISL 398
Query: 112 AQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAM- 170
RK G V+Q LF T+ E + L P A ++ +K
Sbjct: 399 DSLRKRIGIVSQDPLLFS-GTIREN------IALGRPDAT-DEEIEEALKLANAHEFIAN 450
Query: 171 ------ARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLK 224
VG+ V +SGG+R+R++I ++ +P +LILDE TS LD+ + I D LK
Sbjct: 451 LPDGYDTIVGERGVN-LSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALK 509
Query: 225 VMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGT 265
+ +GRT ++ H+ +K + I++L NG ++ GT
Sbjct: 510 KL--LKGRTTLIIAHRLST--IKNADRIIVLDNGRIVERGT 546
|
Length = 567 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 95.0 bits (236), Expect = 2e-21
Identities = 64/188 (34%), Positives = 107/188 (56%), Gaps = 9/188 (4%)
Query: 54 SDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI-DKA 112
S G + V++ +S E ++GP+GAGKS++ +L G ++P G V G P+ +A
Sbjct: 13 SYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRA 72
Query: 113 QFRKVS-GYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMA 171
+ +V+ G V Q D L P TV E L+ + + ++ A + SL++ LE A
Sbjct: 73 RLARVAIGVVPQFDNLDPEFTVRENLLVFGRY-FGMSTREIEAVIPSLLEFARLESKADV 131
Query: 172 RVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRG 231
RV +SGG +RR+++ +I+DP++LILDEPT+GLD + I + L+ + RG
Sbjct: 132 RVAL-----LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLL-ARG 185
Query: 232 RTVILSIH 239
+T++L+ H
Sbjct: 186 KTILLTTH 193
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 98.3 bits (245), Expect = 2e-21
Identities = 69/206 (33%), Positives = 109/206 (52%), Gaps = 15/206 (7%)
Query: 44 ELSKLEEAADS-DGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGST 102
EL + + S + VL G+S E++AIVG SG+GKS+L+ IL P SG+
Sbjct: 6 ELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTY 65
Query: 103 FVNGSPIDK------AQFRKVS-GYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRAR 155
V G + AQ R+ G++ QR L LT + + A + L + Q R
Sbjct: 66 RVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPA-VYAGLERKQRLLR 124
Query: 156 VKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTS 215
+ L++ LGLE RV + + +SGG+++RVSI +++ +V++ DEPT LDS S
Sbjct: 125 AQELLQRLGLE----DRV-EYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHS 179
Query: 216 ALQIIDMLKVMAETRGRTVILSIHQP 241
+++ +L + + RG TVI+ H P
Sbjct: 180 GEEVMAILHQLRD-RGHTVIIVTHDP 204
|
Length = 648 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 93.3 bits (232), Expect = 3e-21
Identities = 61/197 (30%), Positives = 107/197 (54%), Gaps = 17/197 (8%)
Query: 58 RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKA----- 112
+ VL G+ + KP E++AI+GPSG+GK++LL + P++G+ V ID A
Sbjct: 16 QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQ 75
Query: 113 ------QFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLE 166
Q R+ G+V Q LFP TV E ++ + P+ + AR + L+ ++GL
Sbjct: 76 QKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGL- 134
Query: 167 HVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVM 226
A R +SGG+++RV+I + P+V++ DEPTS LD ++++ ++ +
Sbjct: 135 ----AGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQL 190
Query: 227 AETRGRTVILSIHQPGF 243
A+ + RT+++ H+ F
Sbjct: 191 AQEK-RTMVIVTHEMSF 206
|
Length = 250 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 92.5 bits (230), Expect = 3e-21
Identities = 64/208 (30%), Positives = 105/208 (50%), Gaps = 11/208 (5%)
Query: 61 LDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-AQFRKVSG 119
L GV+ + E ++++G SG GKS+LL +++G P SG + G I + R V
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMV-- 58
Query: 120 YVTQRDTLFPLLTVEETLMFSAKLRLR-LPQAQLRARVKSLVKELGLEHVAMARVGDDRV 178
V Q +L P LTV E + + L L +++ RA V+ + +GL A D R
Sbjct: 59 -VFQNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAA-----DKRP 112
Query: 179 RGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSI 238
+SGG ++RV+I + PKVL+LDEP LD+ + + + L + E TV++
Sbjct: 113 GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVT 172
Query: 239 HQPGFRIVKMFNSILMLANGSVLHHGTV 266
H + + + ++ML NG + G +
Sbjct: 173 HDVD-EALLLSDRVVMLTNGPAANIGQI 199
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 97.3 bits (243), Expect = 3e-21
Identities = 69/233 (29%), Positives = 116/233 (49%), Gaps = 19/233 (8%)
Query: 58 RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI---DKAQF 114
+ +L G+S + E L I+GPSG+GKS+L +L G P SGS ++G+ + D+ Q
Sbjct: 349 KPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQL 408
Query: 115 RKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQL-----RARVKSLVKELGLEHVA 169
+ GY+ Q LF T+ E + A+ ++ A V L+ L L
Sbjct: 409 GRHIGYLPQDVELFD-GTIAENI---ARFGEEADPEKVIEAARLAGVHELI--LRLPQGY 462
Query: 170 MARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAET 229
R+G+ +SGG+R+R+++ + DP +++LDEP S LDS + + A+
Sbjct: 463 DTRIGEGG-ATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAIL-AAKA 520
Query: 230 RGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVD-LLSVSLRMMGLQLP 281
RG TV++ H+P + + IL+L +G + G + +L+ LR Q
Sbjct: 521 RGGTVVVIAHRP--SALASVDKILVLQDGRIAAFGPREEVLAKVLRPPPRQAK 571
|
Length = 580 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 92.7 bits (231), Expect = 4e-21
Identities = 61/218 (27%), Positives = 106/218 (48%), Gaps = 27/218 (12%)
Query: 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNG---SPIDKAQFRK 116
VL +S E +A+VGPSG+GKS+L+ ++ SG ++G A R+
Sbjct: 17 VLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRR 76
Query: 117 VSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVK-----SLVKEL--GLEHVA 169
G V+Q LF TV E + + R + ++ + + EL G +
Sbjct: 77 QIGLVSQDVFLFND-TVAENIAYG---RPGATREEVEEAARAANAHEFIMELPEGYD--- 129
Query: 170 MARVGDDRVRGI--SGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMA 227
+G+ RG+ SGG+R+R++I ++ DP +LILDE TS LD+ S + L+ +
Sbjct: 130 -TVIGE---RGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLM 185
Query: 228 ETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGT 265
+ RT + H+ ++ + I++L +G ++ GT
Sbjct: 186 K--NRTTFVIAHR--LSTIENADRIVVLEDGKIVERGT 219
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 92.2 bits (229), Expect = 5e-21
Identities = 63/196 (32%), Positives = 101/196 (51%), Gaps = 13/196 (6%)
Query: 47 KLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNG 106
+ +E + S + +L +S K + I IVGPSGAGKS+L++++ + P GS ++G
Sbjct: 5 EFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDG 64
Query: 107 SPI---DKAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKEL 163
I D R+ G V Q+ LF TV++ + + L+ + V+ + +
Sbjct: 65 VDIKTIDVIDLRRKIGMVFQQPHLFEG-TVKDNIEYGPMLK-----GEKNVDVEYYLSIV 118
Query: 164 GLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDML 223
GL R V+ +SGGE +RVSI + ++P+VL+LDEPTS LD TS I +++
Sbjct: 119 GLNKEYATR----DVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELI 174
Query: 224 KVMAETRGRTVILSIH 239
+ TVI H
Sbjct: 175 VKLKNKMNLTVIWITH 190
|
Length = 241 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 92.2 bits (230), Expect = 5e-21
Identities = 67/232 (28%), Positives = 118/232 (50%), Gaps = 36/232 (15%)
Query: 55 DGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK--- 111
DG + L+ +S P E+ I+GP+GAGK+++++++ GK P GS G+ +
Sbjct: 13 DGFK-ALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPE 71
Query: 112 ---AQF---RKVSGYVTQRDTLFPLLTVEETLMFSAK--------LRLRLPQAQLRARVK 157
A+ RK Q+ T+F LTV E L + L RL + + R++
Sbjct: 72 HQIARAGIGRKF-----QKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEE-KDRIE 125
Query: 158 SLVKELGLEHVAMARVGDDRVRG-ISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSA 216
+++ +GL A DR+ G +S G+++ + IG ++ DPK+L+LDEP +G+
Sbjct: 126 EVLETIGLADEA------DRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEET 179
Query: 217 LQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNS-ILMLANGSVLHHGTVD 267
+ ++LK +A +V++ H F V+ + +L GSVL G++D
Sbjct: 180 EKTAELLKSLA--GKHSVVVVEHDMEF--VRSIADKVTVLHQGSVLAEGSLD 227
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 91.7 bits (228), Expect = 7e-21
Identities = 55/213 (25%), Positives = 103/213 (48%), Gaps = 11/213 (5%)
Query: 62 DGVSCKAKPWEILAIVGPSGAGKS----SLLEILAGKLTPQSGSTFVNGSPIDKAQFR-K 116
++ K E+LA+VG SG+GKS ++L +L LT SG ++G P+ R +
Sbjct: 3 QDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGR 62
Query: 117 VSGYVTQ--RDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVG 174
+ Q R PL T+ + + + + Q RA + ++ +GL V
Sbjct: 63 HIATIMQNPRTAFNPLFTMGNHAIETLRSLGK-LSKQARALILEALEAVGLPDPE--EVL 119
Query: 175 DDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTV 234
+SGG +RV I ++ +P LI DEPT+ LD + +++ +L+ + + G +
Sbjct: 120 KKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGI 179
Query: 235 ILSIHQPGFRIVKMFNSILMLANGSVLHHGTVD 267
+L H G + ++ + + ++ +G ++ GTV
Sbjct: 180 LLITHDLGV-VARIADEVAVMDDGRIVERGTVK 211
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 94.6 bits (236), Expect = 7e-21
Identities = 59/170 (34%), Positives = 94/170 (55%), Gaps = 9/170 (5%)
Query: 72 EILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK--AQFRKVSGYVTQRDTLFP 129
E L ++GPSG GK+++L ++AG TP SG ++G I A+ R V+ V Q LFP
Sbjct: 41 EFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNT-VFQSYALFP 99
Query: 130 LLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRV 189
+TV E + F +++ + P A++ RV ++ + LE A + +SGG+++RV
Sbjct: 100 HMTVFENVAFGLRMQ-KTPAAEITPRVMEALRMVQLEEFA-----QRKPHQLSGGQQQRV 153
Query: 190 SIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIH 239
+I V++ PKVL+LDE S LD Q+ + LK + G T + H
Sbjct: 154 AIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTH 203
|
Length = 375 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 96.6 bits (241), Expect = 8e-21
Identities = 74/223 (33%), Positives = 115/223 (51%), Gaps = 19/223 (8%)
Query: 53 DSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI--- 109
DG +LD VS + +P E +AIVGPSG+GKS+LL +L G TP+SGS F +G +
Sbjct: 462 RPDG-PLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGL 520
Query: 110 DKAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVA 169
D R+ G V Q L ++ E + A L L +A AR+ L +++ +
Sbjct: 521 DVQAVRRQLGVVLQNGRLMS-GSIFENIAGGA--PLTLDEAWEAARMAGLAEDIRAMPMG 577
Query: 170 MARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAET 229
M V + +SGG+R+R+ I ++ P++L+ DE TS LD+ + + + L+ + T
Sbjct: 578 MHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERLKVT 637
Query: 230 RGRTVI---LSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLL 269
R VI LS ++ + I +L G V+ GT D L
Sbjct: 638 --RIVIAHRLS-------TIRNADRIYVLDAGRVVQQGTYDEL 671
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 91.8 bits (228), Expect = 9e-21
Identities = 61/204 (29%), Positives = 100/204 (49%), Gaps = 21/204 (10%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGS-------- 107
G+ VLDG++ E +A++GPSG+GKS++L IL G V G
Sbjct: 11 GILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGR 70
Query: 108 -----PIDKAQFRKVS---GYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSL 159
P D+ R++ G V Q LFP TV + + + L L + +A+ R L
Sbjct: 71 NGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMEL 130
Query: 160 VKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQI 219
L+ V +A D +SGG+++RV+I + PKV++ DE TS LD ++
Sbjct: 131 -----LDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEV 185
Query: 220 IDMLKVMAETRGRTVILSIHQPGF 243
+++++ +A T++L H+ GF
Sbjct: 186 LNVIRRLASEHDLTMLLVTHEMGF 209
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 90.9 bits (226), Expect = 1e-20
Identities = 62/196 (31%), Positives = 104/196 (53%), Gaps = 17/196 (8%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLL-------EILAGKLTPQSGSTFVNGSP 108
G +VL + E++ I+GPSG+GKS+LL EI +G L VN
Sbjct: 12 GPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLK--VNDPK 69
Query: 109 IDKAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLR-LPQAQLRARVKSLVKELGLEH 167
+D+ R+ +G V Q+ LFP LT E +MF LR+R + + + + L+ ++GL
Sbjct: 70 VDERLIRQEAGMVFQQFYLFPHLTALENVMF-GPLRVRGASKEEAEKQARELLAKVGLAE 128
Query: 168 VAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMA 227
A +SGG+++RV+I + PK+++ DEPTS LD +++ +++ +A
Sbjct: 129 RA-----HHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLA 183
Query: 228 ETRGRTVILSIHQPGF 243
E G T+++ H+ GF
Sbjct: 184 E-EGMTMVIVTHEIGF 198
|
Length = 240 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 95.3 bits (238), Expect = 1e-20
Identities = 73/226 (32%), Positives = 117/226 (51%), Gaps = 36/226 (15%)
Query: 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI---DKAQFRK 116
VL G+S + K E +A++G +G GKS+LL++L PQ G +NG PI +A R+
Sbjct: 355 VLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQ 414
Query: 117 VSGYVTQRDTLFPLLTVEETLMFSAKLR--LRLPQAQLR-ARVKSLVKELGLEHVAMARV 173
V+QR LF SA LR L L + +++++GLE +
Sbjct: 415 AISVVSQRVHLF-----------SATLRDNLLLAAPNASDEALIEVLQQVGLEKLLE--- 460
Query: 174 GDDRV--------RGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKV 225
D + R +SGGE+RR+ I ++HD +L+LDEPT GLD+ + QI+++L
Sbjct: 461 DDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAE 520
Query: 226 MAETRGRTVILSIHQPGFRIVKM--FNSILMLANGSVLHHGTVDLL 269
A + +TV++ H R+ + F+ I ++ NG ++ GT L
Sbjct: 521 HA--QNKTVLMITH----RLTGLEQFDRICVMDNGQIIEQGTHQEL 560
|
Length = 574 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 89.9 bits (223), Expect = 2e-20
Identities = 54/201 (26%), Positives = 86/201 (42%), Gaps = 27/201 (13%)
Query: 49 EEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSP 108
+E R + G+S E L + GP+G+GK++LL ILAG P +G +NG P
Sbjct: 4 DELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGP 63
Query: 109 IDKAQFRKVSG--YVTQRDTLFPLLTVEETLMFSAKLRLR------LPQAQLRARVKSLV 160
+D + G Y+ + L+V E L F L + L
Sbjct: 64 LDFQRDSIARGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLN------- 116
Query: 161 KELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQII 220
G E +A+ +S G++RRV++ ++ + ILDEPT+ LD +
Sbjct: 117 ---GFEDRPVAQ--------LSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFA 165
Query: 221 DMLKVMAETRGRTVILSIHQP 241
+ + RG V+L+ HQ
Sbjct: 166 EAMAGHCA-RGGMVVLTTHQD 185
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 95.1 bits (237), Expect = 2e-20
Identities = 70/218 (32%), Positives = 113/218 (51%), Gaps = 14/218 (6%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI---DKA 112
G + L G+S + E LAI+GPSG+GKS+L ++ G P SGS ++G+ + D+
Sbjct: 329 GKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRE 388
Query: 113 QFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRL-PQAQLRARVKSLVKEL--GLEHVA 169
F K GY+ Q LFP TV E + A+ P+ + A + V EL L
Sbjct: 389 TFGKHIGYLPQDVELFP-GTVAENI---ARFGENADPEKIIEAAKLAGVHELILRLPDGY 444
Query: 170 MARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAET 229
+G +SGG+R+R+++ + DPK+++LDEP S LD + + +K +
Sbjct: 445 DTVIGPGGA-TLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIK-ALKA 502
Query: 230 RGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVD 267
RG TV++ H+P ++ + IL+L +G + G D
Sbjct: 503 RGITVVVITHRP--SLLGCVDKILVLQDGRIARFGERD 538
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 92.8 bits (231), Expect = 2e-20
Identities = 60/200 (30%), Positives = 101/200 (50%), Gaps = 22/200 (11%)
Query: 73 ILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPID--------KAQFRKVSGYVTQR 124
I A+ GPSG+GK+SL+ ++AG P G +NG + + R++ GYV Q
Sbjct: 26 ITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRI-GYVFQD 84
Query: 125 DTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGG 184
LFP TV L + +RA+ LV LG+EH+ D +SGG
Sbjct: 85 ARLFPHYTVRGNLRYGMW-------KSMRAQFDQLVALLGIEHLL-----DRYPGTLSGG 132
Query: 185 ERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFR 244
E++RV+IG ++ P++L++DEP + LD +I+ L+ + + IL +
Sbjct: 133 EKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRD-EINIPILYVSHSLDE 191
Query: 245 IVKMFNSILMLANGSVLHHG 264
++++ + +++L NG V G
Sbjct: 192 VLRLADRVVVLENGKVKASG 211
|
Length = 352 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 90.3 bits (224), Expect = 2e-20
Identities = 67/218 (30%), Positives = 108/218 (49%), Gaps = 23/218 (10%)
Query: 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPID------KAQ 113
VL VS E++AIVG SG+GKS+LL +L G TP SG NG P+ KA+
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83
Query: 114 FRKVS-GYVTQRDTLFPLLTVEET----LMFSAKLRLRLPQAQLRARVKSLVKELGLEHV 168
R G++ Q L P T E L+ K + RA ++ +GLEH
Sbjct: 84 LRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKP---AEINSRAL--EMLAAVGLEHR 138
Query: 169 AMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAE 228
A R + +SGGER+RV+I ++++P++++ DEPT LD+ +A I +L +
Sbjct: 139 ANHRPSE-----LSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNR 193
Query: 229 TRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTV 266
+G ++ H ++ K + L + +G + ++
Sbjct: 194 LQGTAFLVVTHD--LQLAKRMSRQLEMRDGRLTAELSL 229
|
Length = 233 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 94.4 bits (235), Expect = 3e-20
Identities = 63/225 (28%), Positives = 117/225 (52%), Gaps = 25/225 (11%)
Query: 58 RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQF 114
R LD +S +P E +A+VG SG+GKS+L+ ++ P SG ++G + A
Sbjct: 345 RPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASL 404
Query: 115 RKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLR-----ARVKSLVKEL--GLEH 167
R+ V+Q LF T+ + + + +A++ A + V +L GL+
Sbjct: 405 RRQVALVSQDVVLFN-DTIANNIAYGR--TEQADRAEIERALAAAYAQDFVDKLPLGLDT 461
Query: 168 VAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDML-KVM 226
+G++ V +SGG+R+R++I ++ D +LILDE TS LD+ S + L ++M
Sbjct: 462 P----IGENGVL-LSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLM 516
Query: 227 AETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGT-VDLLS 270
+GRT ++ H+ ++ + I+++ +G ++ GT +LL+
Sbjct: 517 ---QGRTTLVIAHR--LSTIEKADRIVVMDDGRIVERGTHNELLA 556
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 89.8 bits (223), Expect = 3e-20
Identities = 66/193 (34%), Positives = 93/193 (48%), Gaps = 21/193 (10%)
Query: 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK------AQ 113
+L GV K E +A++G SG+GKS+LL ILAG SG + G P+ + A+
Sbjct: 25 ILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84
Query: 114 FR-KVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMAR 172
R K G+V Q L P L E + A LR Q R K+L+++LGL
Sbjct: 85 LRAKHVGFVFQSFMLIPTLNALENVELPALLRGE-SSRQSRNGAKALLEQLGLG------ 137
Query: 173 VGDDRVR----GISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAE 228
R+ +SGGE++RV++ P VL DEPT LD + +I D+L +
Sbjct: 138 ---KRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNR 194
Query: 229 TRGRTVILSIHQP 241
G T+IL H
Sbjct: 195 EHGTTLILVTHDL 207
|
Length = 228 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 94.3 bits (235), Expect = 3e-20
Identities = 73/226 (32%), Positives = 118/226 (52%), Gaps = 23/226 (10%)
Query: 55 DGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNG---SPIDK 111
D R+ ++ VS +AKP + +AIVGP+GAGKS+L+ +L PQSG ++G + +
Sbjct: 345 DNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTR 404
Query: 112 AQFRKVSGYVTQRDTLFPLLTVEETLMF------SAKLRLRLPQAQLRARVKSLVKELGL 165
A R+ V Q LF ++E+ + ++R +AQ + K G
Sbjct: 405 ASLRRNIAVVFQDAGLFN-RSIEDNIRVGRPDATDEEMRAAAERAQAHDFI--ERKPDGY 461
Query: 166 EHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDML-K 224
+ VG +R R +SGGER+R++I ++ DP +LILDE TS LD + ++ L +
Sbjct: 462 D----TVVG-ERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDE 516
Query: 225 VMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270
+M +GRT + H+ V+ + IL+ NG V+ G+ D L
Sbjct: 517 LM---KGRTTFIIAHR--LSTVRNADRILVFDNGRVVESGSFDELV 557
|
Length = 588 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 93.9 bits (234), Expect = 4e-20
Identities = 66/215 (30%), Positives = 99/215 (46%), Gaps = 31/215 (14%)
Query: 55 DGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQF 114
DG R +L +S + + +AIVGP+GAGKS+LL++LAG+L P SG T G
Sbjct: 332 DGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSG-TVKVGE------- 383
Query: 115 RKVSGYVTQ-RDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARV 173
GY Q RD L P TV E L V++ + G
Sbjct: 384 TVKIGYFDQHRDELDPDKTVLEELS-------EGFPDGDEQEVRAYLGRFGFT------- 429
Query: 174 GDD---RVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETR 230
G+D V +SGGE+ R+ + ++ P +L+LDEPT+ LD S + + L +
Sbjct: 430 GEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALL---DFE 486
Query: 231 GRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGT 265
G TV+L H F + ++ I ++ + G
Sbjct: 487 G-TVLLVSHDRYF-LDRVATRIWLVEDKVEEFEGG 519
|
Length = 530 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 89.9 bits (223), Expect = 4e-20
Identities = 70/233 (30%), Positives = 120/233 (51%), Gaps = 27/233 (11%)
Query: 47 KLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNG 106
+L + S G R ++DGV A P + ++GP+G+GKS+LL +LAG L P +G+ + G
Sbjct: 3 RLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAG 62
Query: 107 SPID----KAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRAR------- 155
+ +A+ R+V+ DT P LTV + + R+P L A
Sbjct: 63 VDLHGLSRRARARRVALVEQDSDTAVP-LTVRDVVALG-----RIPHRSLWAGDSPHDAA 116
Query: 156 -VKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDST 214
V + L H+A D + +SGGER+RV + + +PK+L+LDEPT+ LD
Sbjct: 117 VVDRALARTELSHLA-----DRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVR 171
Query: 215 SALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMF-NSILMLANGSVLHHGTV 266
+ L+ + +++ +A T G TV+ ++H + + + +++L G V+ G
Sbjct: 172 AQLETLALVRELAAT-GVTVVAALHD--LNLAASYCDHVVVLDGGRVVAAGPP 221
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 89.7 bits (223), Expect = 5e-20
Identities = 52/221 (23%), Positives = 104/221 (47%), Gaps = 21/221 (9%)
Query: 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEIL------------AGKLTPQSGSTFVNGS 107
L ++ ++ A++GPSG GKS+LL L GK+ +
Sbjct: 16 ALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQD--IYDK 73
Query: 108 PIDKAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEH 167
ID + R+ G V Q+ FP +++ + + + +L + +L V+ +K+ L
Sbjct: 74 KIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWD 132
Query: 168 VAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMA 227
R+ D G+SGG+++R+ I + +P+VL+LDEPTS LD + +I +++
Sbjct: 133 EVKDRL-HDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKI---EELIQ 188
Query: 228 ETRGR-TVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVD 267
E + + T+++ H ++ + +G ++ +G +
Sbjct: 189 ELKKKYTIVIVTHNMQQAA-RISDRTAFFYDGELVEYGPTE 228
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 92.2 bits (229), Expect = 5e-20
Identities = 64/190 (33%), Positives = 101/190 (53%), Gaps = 16/190 (8%)
Query: 55 DGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI-DKAQ 113
DG V D VS EI A++G SG GKS+LL +LAG P +G ++G +
Sbjct: 30 DGQHAV-DDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP 88
Query: 114 FRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARV 173
+++ + Q LFP +TVE+ + F K + +LP+A++ +RV + LGL H M
Sbjct: 89 YQRPINMMFQSYALFPHMTVEQNIAFGLK-QDKLPKAEIASRVNEM---LGLVH--MQEF 142
Query: 174 GDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDST----SALQIIDMLKVMAET 229
+ +SGG+R+RV++ + PK+L+LDEP LD L+++D+L E
Sbjct: 143 AKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDIL----ER 198
Query: 230 RGRTVILSIH 239
G T ++ H
Sbjct: 199 VGVTCVMVTH 208
|
Length = 377 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 89.6 bits (222), Expect = 5e-20
Identities = 71/236 (30%), Positives = 119/236 (50%), Gaps = 34/236 (14%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI------ 109
G VL GVS +A ++++I+G SG+GKS+ L + P GS VNG I
Sbjct: 16 GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDK 75
Query: 110 -------DKAQFRKVSGYVT---QRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSL 159
DK Q R + +T Q L+ +TV E +M + L L + + R R
Sbjct: 76 DGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKY 135
Query: 160 VKELGLEHVAMARVGDDRVRG-----ISGGERRRVSIGFDVIHDPKVLILDEPTSGLDST 214
+ ++G+ D+R +G +SGG+++RVSI + +P+VL+ DEPTS LD
Sbjct: 136 LAKVGI---------DERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPE 186
Query: 215 SALQIIDMLKVMAETRGRTVILSIHQPGF-RIVKMFNSILMLANGSVLHHGTVDLL 269
+++ +++ +AE G+T+++ H+ GF R V + ++ L G + G + L
Sbjct: 187 LVGEVLRIMQQLAE-EGKTMVVVTHEMGFARHVS--SHVIFLHQGKIEEEGAPEQL 239
|
Length = 257 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 90.1 bits (224), Expect = 6e-20
Identities = 62/231 (26%), Positives = 115/231 (49%), Gaps = 15/231 (6%)
Query: 58 RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKA---QF 114
L VS E +AIVG +G+GKS+L ++L G L P++G+ V G + +
Sbjct: 20 TYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDV 79
Query: 115 RKVSGYVTQR-DTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARV 173
R+ G V Q D F TV++ + F + +P+ ++ RV ++++G+E
Sbjct: 80 RRQVGMVFQNPDNQFVGATVQDDVAFGLENI-GVPREEMVERVDQALRQVGMEDFL---- 134
Query: 174 GDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRT 233
+ +SGG+++RV+I + P ++ILDE TS LD ++++ ++ + E +G T
Sbjct: 135 -NREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGIT 193
Query: 234 VILSIHQPGFRIVKMFNSILMLANGSVLHHGT---VDLLSVSLRMMGLQLP 281
V+ H + ++++ G +L GT + L+ +GL +P
Sbjct: 194 VLSITHD--LDEAAQADRVIVMNKGEILEEGTPEEIFKSGHMLQEIGLDVP 242
|
Length = 279 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 89.3 bits (222), Expect = 6e-20
Identities = 64/226 (28%), Positives = 116/226 (51%), Gaps = 12/226 (5%)
Query: 47 KLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNG 106
+E + S G + VLD VS I +I+GP+GAGKS+LL +++ L SG ++G
Sbjct: 3 TIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDG 62
Query: 107 SPI---DKAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLP--QAQLRARVKSLVK 161
+ + K + Q + + LTV + + F R P Q +L + ++
Sbjct: 63 LELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFG-----RFPYSQGRLTKEDRRIIN 117
Query: 162 ELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIID 221
E +E++ + + D + +SGG+R+R I + D ++LDEP + LD ++QI+
Sbjct: 118 E-AIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMK 176
Query: 222 MLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVD 267
+L+ +A+ G+T+++ +H F + I+ L NG V+ G+ D
Sbjct: 177 ILRRLADELGKTIVVVLHDINFASCYS-DHIVALKNGKVVKQGSPD 221
|
Length = 252 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 88.8 bits (221), Expect = 6e-20
Identities = 67/222 (30%), Positives = 112/222 (50%), Gaps = 27/222 (12%)
Query: 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRK 116
+L G+S P + +A+VG SG GKS+++ +L P SG ++G I R
Sbjct: 18 ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRS 77
Query: 117 VSGYVTQRDTLFPLLTVEETLMFSAKLR--LRLPQAQLRARVKSLVKEL--GLEHVAMAR 172
G V+Q LF T+ E + + + +A +A + + L G +
Sbjct: 78 QIGLVSQEPVLFDG-TIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYD----TL 132
Query: 173 VGDDRVRG--ISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDML-KVMAET 229
VG+ RG +SGG+++R++I ++ +PK+L+LDE TS LD+ S + + L + M
Sbjct: 133 VGE---RGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM--- 186
Query: 230 RGRTVILSIHQPGFRI--VKMFNSILMLANGSVLHHGTVDLL 269
+GRT I+ H R+ ++ + I +L NG V+ GT D L
Sbjct: 187 KGRTTIVIAH----RLSTIRNADLIAVLQNGQVVEQGTHDEL 224
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 89.4 bits (222), Expect = 9e-20
Identities = 72/257 (28%), Positives = 121/257 (47%), Gaps = 21/257 (8%)
Query: 59 RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKA---QFR 115
+ L G+S A++GP+GAGKS+LL L G PQ G V G ++ R
Sbjct: 19 KALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVR 78
Query: 116 KVSGYVTQ--RDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARV 173
G V Q D +F TV + + F + + L + ++ RV E L+ V M
Sbjct: 79 SKVGLVFQDPDDQVFS-STVWDDVAF-GPVNMGLDKDEVERRV-----EEALKAVRMWDF 131
Query: 174 GDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRT 233
D +S G+++RV+I + DP V++LDEP + LD ++++L + +G+T
Sbjct: 132 RDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRL-HNQGKT 190
Query: 234 VILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSVS--LRMMGLQLPMHVNVV---- 287
VI++ H + + +++L G VL G LL+ + GL+LP+ +
Sbjct: 191 VIVATHDVDL-AAEWADQVIVLKEGRVLAEGDKSLLTDEDIVEQAGLRLPLVAQIFEDLP 249
Query: 288 EFAIESIDL-IQEQRKI 303
E + L ++E +I
Sbjct: 250 ELGQSKLPLTVKEAVQI 266
|
Length = 274 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 93.0 bits (232), Expect = 1e-19
Identities = 64/210 (30%), Positives = 103/210 (49%), Gaps = 30/210 (14%)
Query: 74 LAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNG---SPIDKAQFRKVSGYVTQRDTLFPL 130
+A+VGPSGAGK+SLL L G L P GS +NG +D +RK +V Q L
Sbjct: 379 IALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLP-- 435
Query: 131 LTVEETLMFSAKLRLRLPQA---QL-----RARVKSLVKEL--GLEHVAMARVGDDRVRG 180
TL + L P A QL A V + L GL+ +GD + G
Sbjct: 436 ---HGTLR--DNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTP----IGD-QAAG 485
Query: 181 ISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQ 240
+S G+ +R+++ ++ ++L+LDEPT+ LD+ S ++ L A +R +T ++ HQ
Sbjct: 486 LSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALN--AASRRQTTLMVTHQ 543
Query: 241 PGFRIVKMFNSILMLANGSVLHHGTVDLLS 270
+ ++ I ++ +G ++ G LS
Sbjct: 544 LED--LAQWDQIWVMQDGQIVQQGDYAELS 571
|
Length = 588 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 89.3 bits (221), Expect = 1e-19
Identities = 74/237 (31%), Positives = 122/237 (51%), Gaps = 20/237 (8%)
Query: 61 LDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQF------ 114
L+ ++ K E + I+G +G+GKS+L L G L PQ G V+G ID F
Sbjct: 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSG--IDTGDFSKLQGI 75
Query: 115 RKVSGYVTQR-DTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARV 173
RK+ G V Q +T F TVEE L F + L LP ++R RV + E+GLE +
Sbjct: 76 RKLVGIVFQNPETQFVGRTVEEDLAFGPE-NLCLPPIEIRKRVDRALAEIGLE-----KY 129
Query: 174 GDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRT 233
+ +SGG+ + V++ + +P+ LI DE TS LD S + +++ +K + E +G+T
Sbjct: 130 RHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHE-KGKT 188
Query: 234 VILSIHQPGFRIVKMFNSILMLANGSVLHHGTVD--LLSVSLRMMGLQLPMHVNVVE 288
++ H + + I+++ G ++ G + L VSL+ +GL P + + E
Sbjct: 189 IVYITHN--LEELHDADRIIVMDRGKIVLEGEPENVLSDVSLQTLGLTPPSLIELAE 243
|
Length = 274 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 88.5 bits (220), Expect = 1e-19
Identities = 68/221 (30%), Positives = 120/221 (54%), Gaps = 23/221 (10%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFR 115
G +R+L+ +S +I A++GP+G GKS+LL+ A LTPQSG+ F+ PI R
Sbjct: 13 GTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSR 72
Query: 116 KVSGYVTQRDTLFPL-------LTVEETLMF--SAKLRL--RLPQAQLRARVKSLVKELG 164
+++ + L P +TV E + + S L L RL ARV +++
Sbjct: 73 QLARRL----ALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAED-NARVNQAMEQTR 127
Query: 165 LEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLK 224
+ H+A D R+ +SGG+R+R + + D V++LDEPT+ LD ++++ +++
Sbjct: 128 INHLA-----DRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMR 182
Query: 225 VMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGT 265
+ T+G+TV+ +H + + + +++LANG V+ GT
Sbjct: 183 ELN-TQGKTVVTVLHDLN-QASRYCDHLVVLANGHVMAQGT 221
|
Length = 255 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 92.1 bits (229), Expect = 2e-19
Identities = 62/214 (28%), Positives = 107/214 (50%), Gaps = 15/214 (7%)
Query: 58 RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI---DKAQF 114
+ LDG++ +P E +A+VGPSGAGKS+L ++L PQSG ++G + D A+
Sbjct: 353 QPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAEL 412
Query: 115 RKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKE---LGLEHVAMA 171
R V Q LF +V E + + R ++ A ++ L
Sbjct: 413 RARMALVPQDPVLFA-ASVMENIRYG---RPDATDEEVEAAARAAHAHEFISALPEGYDT 468
Query: 172 RVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRG 231
+G+ V +SGG+R+R++I ++ D +L+LDE TS LD+ S + L+ + + G
Sbjct: 469 YLGERGVT-LSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMK--G 525
Query: 232 RTVILSIHQPGFRIVKMFNSILMLANGSVLHHGT 265
RT ++ H+ V + I+++ G ++ GT
Sbjct: 526 RTTLIIAHR--LATVLKADRIVVMDQGRIVAQGT 557
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 87.1 bits (216), Expect = 2e-19
Identities = 61/208 (29%), Positives = 102/208 (49%), Gaps = 13/208 (6%)
Query: 58 RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI---DKAQF 114
VL VS P E+ A+VGPSG+GKS+++ +L PQ G ++G PI +
Sbjct: 27 TLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYL 86
Query: 115 RKVSGYVTQRDTLFPLLTVEETLMF--SAKLRLRLPQAQLRARVKSLVKELGLEHVAMAR 172
V Q LF ++++ + + + + +A +A S + EL +
Sbjct: 87 HSKVSLVGQEPVLFA-RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEV- 144
Query: 173 VGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGR 232
++ +SGG+++RV+I +I +P+VLILDE TS LD+ S Q+ L R
Sbjct: 145 --GEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALY--DWPERR 200
Query: 233 TVILSIHQPGFRIVKMFNSILMLANGSV 260
TV++ H+ V+ + IL+L G +
Sbjct: 201 TVLVIAHR--LSTVERADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 87.8 bits (218), Expect = 3e-19
Identities = 56/193 (29%), Positives = 96/193 (49%), Gaps = 15/193 (7%)
Query: 58 RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKV 117
+R L+G+S + + + ++G +GAGKS+LL +AG L P SG ++G + K K
Sbjct: 19 KRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKR 78
Query: 118 SGY---VTQR--DTLFPLLTVEETLMFSAK------LRLRLPQAQLRARVKSLVKELGLE 166
+ V Q P LT+EE L + L L + R+ + + LGL
Sbjct: 79 ANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSAL-NERRRSSFRERLARLGL- 136
Query: 167 HVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVM 226
+ DR+ +SGG+R+ +S+ +H PK+L+LDE T+ LD +A ++++ +
Sbjct: 137 --GLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKI 194
Query: 227 AETRGRTVILSIH 239
E T ++ H
Sbjct: 195 VEEHKLTTLMVTH 207
|
Length = 263 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 90.8 bits (226), Expect = 4e-19
Identities = 59/222 (26%), Positives = 115/222 (51%), Gaps = 23/222 (10%)
Query: 59 RVLDGVSCKAKPWEILAIVGPSGAGKSSL-LEILAGKLTPQSGSTFVNGSPIDKAQFRKV 117
R +DG+S + + L +VG SG+GKS+L L +L +L P G +G ID +++
Sbjct: 301 RAVDGISLTLRRGQTLGLVGESGSGKSTLGLALL--RLIPSQGEIRFDGQDIDGLSRKEM 358
Query: 118 SGYVTQRDTLF--------PLLTVEETLMFSAKLRLRLPQ---AQLRARVKSLVKELGLE 166
+ +F P +TV + + LR+ P+ A+ RV ++E+GL+
Sbjct: 359 RPLRRRMQVVFQDPYGSLSPRMTVGQ--IIEEGLRVHEPKLSAAERDQRVIEALEEVGLD 416
Query: 167 HVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVM 226
R + SGG+R+R++I +I P++++LDEPTS LD + Q++D+L+ +
Sbjct: 417 PATRNRYPHE----FSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDL 472
Query: 227 AETRGRTVILSIHQPGFRIVK-MFNSILMLANGSVLHHGTVD 267
+ G + + H +V+ + + ++++ +G ++ G +
Sbjct: 473 QQKHGLSYLFISHD--LAVVRALCHRVIVMRDGKIVEQGPTE 512
|
Length = 534 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 86.4 bits (214), Expect = 4e-19
Identities = 57/180 (31%), Positives = 94/180 (52%), Gaps = 17/180 (9%)
Query: 67 KAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDT 126
A E+L ++GP+GAGK++LL + G + P G+ V G+ K + GYV QR
Sbjct: 2 SADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKG--WRHIGYVPQRHE 59
Query: 127 L---FPLLTVEETLMFSAKLR----LRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVR 179
FP+ +V T+M S + LR P A V+ ++ +GL +A VG+
Sbjct: 60 FAWDFPI-SVAHTVM-SGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGE---- 113
Query: 180 GISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIH 239
+SGG+R+RV + + P VL+LDEP +GLD + + ++ +A G ++++ H
Sbjct: 114 -LSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGA-GTAILMTTH 171
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 88.9 bits (221), Expect = 4e-19
Identities = 52/159 (32%), Positives = 81/159 (50%), Gaps = 9/159 (5%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKA--Q 113
G L +S K E + ++GPSG GK++LL I+AG +G+ + G I + Q
Sbjct: 15 GAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ 74
Query: 114 FRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARV 173
R G V Q LFP LTV + + + K R + +A++ RV L L+ V +
Sbjct: 75 KRDY-GIVFQSYALFPNLTVADNIAYGLKNR-GMGRAEVAERVAEL-----LDLVGLPGS 127
Query: 174 GDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLD 212
+SGG+++RV++ + P +L+LDEP S LD
Sbjct: 128 ERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALD 166
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 85.7 bits (212), Expect = 5e-19
Identities = 56/197 (28%), Positives = 88/197 (44%), Gaps = 13/197 (6%)
Query: 48 LEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQ---SGSTFV 104
L+ + +L V+ EI+ ++GPSG GKS+LL + G L Q +G ++
Sbjct: 5 LKNVSLRLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWL 64
Query: 105 NGSPIDK--AQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKE 162
N +D A R++ G + Q LFP L+V + L+F+ LP A L+ +
Sbjct: 65 NEQRLDMLPAAQRQI-GILFQDALLFPHLSVGQNLLFA------LP-ATLKGNARRNAAN 116
Query: 163 LGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDM 222
LE + +SGG+R RV++ ++ PK L+LDEP S LD Q
Sbjct: 117 AALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQW 176
Query: 223 LKVMAETRGRTVILSIH 239
+ G + H
Sbjct: 177 VFSEVRAAGIPTVQVTH 193
|
Length = 213 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 85.9 bits (213), Expect = 6e-19
Identities = 56/202 (27%), Positives = 96/202 (47%), Gaps = 13/202 (6%)
Query: 42 QEELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGS 101
L +L+ G ++L+ +S + E I GPSG GKS+LL+I+A ++P SG+
Sbjct: 4 NSPLLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGT 63
Query: 102 TFVNGSPI---DKAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKS 158
G I +R+ Y Q TLF TV + L+F ++R + P +
Sbjct: 64 LLFEGEDISTLKPEIYRQQVSYCAQTPTLFG-DTVYDNLIFPWQIRNQQPDPA--IFLDD 120
Query: 159 LVK-ELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSAL 217
L + L + + +SGGE++R+S+ ++ PKVL+LDE TS LD ++
Sbjct: 121 LERFALPDTIL------TKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKH 174
Query: 218 QIIDMLKVMAETRGRTVILSIH 239
+ +++ + V+ H
Sbjct: 175 NVNEIIHRYVREQNIAVLWVTH 196
|
Length = 225 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 86.6 bits (214), Expect = 7e-19
Identities = 64/232 (27%), Positives = 112/232 (48%), Gaps = 14/232 (6%)
Query: 47 KLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLT----PQS--- 99
++E+ A + + L V E++A++GPSG+GKS+LL L+G +T S
Sbjct: 6 RVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIE 65
Query: 100 --GSTFVNGSPI--DKAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLR-- 153
G T + D + R +GY+ Q+ L L+V E ++ A +
Sbjct: 66 LLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWF 125
Query: 154 ARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDS 213
R + L V M RV +SGG+++RV+I ++ KV++ DEP + LD
Sbjct: 126 TREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDP 185
Query: 214 TSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGT 265
SA ++D L+ + + G TV++++HQ + + + I+ L G V + G+
Sbjct: 186 ESARIVMDTLRDINQNDGITVVVTLHQVDYAL-RYCERIVALRQGHVFYDGS 236
|
Length = 262 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 90.2 bits (224), Expect = 8e-19
Identities = 71/233 (30%), Positives = 110/233 (47%), Gaps = 24/233 (10%)
Query: 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNG---SPIDKAQFRK 116
VL ++ KP E + IVGPSG+GKS+L ++L TPQ G V+G + D A R+
Sbjct: 472 VLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRR 531
Query: 117 VSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELG-LEHVAMARVG- 174
G V Q + LF + + L P A V K G + ++ G
Sbjct: 532 QMGVVLQENVLFSRSIRD-------NIALCNPGAPF-EHVIHAAKLAGAHDFISELPQGY 583
Query: 175 ----DDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETR 230
++ +SGG+R+R++I ++ +P++LI DE TS LD S I M + R
Sbjct: 584 NTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALI--MRNMREICR 641
Query: 231 GRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSVSLRMMGLQLPMH 283
GRTVI+ H+ V+ + I++L G + G + L L + GL +
Sbjct: 642 GRTVIIIAHR--LSTVRACDRIIVLEKGQIAESGRHEEL---LALQGLYARLW 689
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 84.4 bits (210), Expect = 1e-18
Identities = 60/208 (28%), Positives = 99/208 (47%), Gaps = 31/208 (14%)
Query: 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSG 119
L ++ + E++AIVGP G+GKSSLL L G+L SGS V GS
Sbjct: 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGS----------IA 69
Query: 120 YVTQRDTLFPLL---TVEETLMFSAKLRLRLPQAQLRARVKSLVKELG-LEHVAMARVGD 175
YV+Q P + T+ E ++F + ++A +L +L L + +G+
Sbjct: 70 YVSQ----EPWIQNGTIRENILFGKPFDEERYEKVIKA--CALEPDLEILPDGDLTEIGE 123
Query: 176 DRVRGI--SGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDM--LKVMAETRG 231
+GI SGG+++R+S+ V D + +LD+P S +D+ I + L ++
Sbjct: 124 ---KGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLN--N 178
Query: 232 RTVILSIHQPGFRIVKMFNSILMLANGS 259
+T IL HQ + + I++L NG
Sbjct: 179 KTRILVTHQLQL--LPHADQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 88.8 bits (221), Expect = 2e-18
Identities = 65/210 (30%), Positives = 95/210 (45%), Gaps = 47/210 (22%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFR 115
G R +L+ VS P E + +VG +GAGKS+LL+ILAG+L P SG + + +
Sbjct: 14 GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGE-------VTRPKGL 66
Query: 116 KVSGYVTQRDTLFPLLTVEETLMFSAK-----------------------------LRLR 146
+V GY++Q L P TV + ++ L
Sbjct: 67 RV-GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEE 125
Query: 147 LPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDE 206
L L AR + + LG D V +SGG RRRV++ ++ +P +L+LDE
Sbjct: 126 LDGWTLEARAEEALLGLGFPDE------DRPVSSLSGGWRRRVALARALLEEPDLLLLDE 179
Query: 207 PTSGLDSTSALQIIDMLKVMAETRGRTVIL 236
PT+ LD S + D LK G TVI+
Sbjct: 180 PTNHLDLESIEWLEDYLK---RYPG-TVIV 205
|
Length = 530 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 85.5 bits (212), Expect = 3e-18
Identities = 66/225 (29%), Positives = 110/225 (48%), Gaps = 25/225 (11%)
Query: 75 AIVGPSGAGKSSLLEILAGKLTPQSGS------TFVNG-SPIDKAQFRKVSGYVTQRDTL 127
AI+G +G+GKS+LL+ L G L P SG+ G RK G V Q
Sbjct: 37 AIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQ---- 92
Query: 128 FP---LL--TVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGIS 182
FP L TVE+ + F + + + + + + +++ +GL +AR + +S
Sbjct: 93 FPEHQLFEETVEKDICF-GPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFE----LS 147
Query: 183 GGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPG 242
GG+ RRV+I + +P+VL+LDEPT+GLD ++++M + + +G T +L H
Sbjct: 148 GGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME 207
Query: 243 FRIVKMFNSILMLANGSVLHHGT---VDLLSVSLRMMGLQLPMHV 284
+ + I+++ G+V GT + L +GL LP V
Sbjct: 208 -DAARYADQIVVMHKGTVFLQGTPREIFADPDELEAIGLDLPETV 251
|
Length = 290 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 84.9 bits (210), Expect = 3e-18
Identities = 63/206 (30%), Positives = 106/206 (51%), Gaps = 25/206 (12%)
Query: 73 ILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQR---DTLFP 129
I A+VG +G+GKS+L + L G + SG + G P +A + + YV Q D FP
Sbjct: 35 IAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFP 94
Query: 130 LLTVEETLM---FSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVG--DDRVRGI--- 181
+L VE+ +M + LR + + R V + A+ARV + R R I
Sbjct: 95 VL-VEDVVMMGRYGHMGWLRRAKKRDRQIVTA----------ALARVDMVEFRHRQIGEL 143
Query: 182 SGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQP 241
SGG+++RV + + +V++LDEP +G+D + +II +L+ + + G+T+++S H
Sbjct: 144 SGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRD-EGKTMLVSTHNL 202
Query: 242 GFRIVKMFNSILMLANGSVLHHGTVD 267
G V F ++ G+VL G +
Sbjct: 203 G--SVTEFCDYTVMVKGTVLASGPTE 226
|
Length = 272 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 84.8 bits (210), Expect = 3e-18
Identities = 66/221 (29%), Positives = 108/221 (48%), Gaps = 12/221 (5%)
Query: 44 ELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTF 103
E+ L D + L+ VS K E L+I+G +G+GKS+ + ++ G L +SG
Sbjct: 6 EVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQII 65
Query: 104 VNG---SPIDKAQFRKVSGYVTQR-DTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSL 159
++G + + R G V Q D F TVE+ + F + + +P +++ RV
Sbjct: 66 IDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENK-GIPHEEMKERVNE- 123
Query: 160 VKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQI 219
LE V M + +SGG+++RV+I V PK++ILDE TS LD L++
Sbjct: 124 ----ALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLEL 179
Query: 220 IDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSV 260
I +K + + TVI H V + + +L++ NG V
Sbjct: 180 IKTIKGIRDDYQMTVISITHD--LDEVALSDRVLVMKNGQV 218
|
Length = 279 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 84.0 bits (208), Expect = 4e-18
Identities = 62/198 (31%), Positives = 98/198 (49%), Gaps = 25/198 (12%)
Query: 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFV 104
L LE + S G RRVL VS + KP +IL ++GP+GAGKS+L+ ++ G + P G
Sbjct: 4 LVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGV--- 60
Query: 105 NGSPIDKAQFRKVSGYVTQR---DTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVK 161
I + ++ GYV Q+ DT P LTV L LR K
Sbjct: 61 ----IKRNGKLRI-GYVPQKLYLDTTLP-LTVNRFLR-------------LRPGTKKEDI 101
Query: 162 ELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIID 221
L+ V + D ++ +SGGE +RV + +++ P++L+LDEPT G+D + + D
Sbjct: 102 LPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYD 161
Query: 222 MLKVMAETRGRTVILSIH 239
++ + V++ H
Sbjct: 162 LIDQLRRELDCAVLMVSH 179
|
Length = 251 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 83.7 bits (207), Expect = 5e-18
Identities = 59/178 (33%), Positives = 94/178 (52%), Gaps = 12/178 (6%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEIL--AGKLTPQ---SGSTFVNGSPI- 109
++ L+ VS P EI A++GPSG+GKS+LL + L P+ +GS NG I
Sbjct: 16 NKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIY 75
Query: 110 ----DKAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGL 165
D RK G V Q+ FP+ ++ E +++ +L+ + L V+ +K +
Sbjct: 76 SPRTDTVDLRKEIGMVFQQPNPFPM-SIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASI 134
Query: 166 EHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDML 223
R+ D + G+SGG+++RV I + PK+++LDEPTS LD SA +I + L
Sbjct: 135 WDEVKDRLHDSAL-GLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETL 191
|
Length = 252 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 87.9 bits (218), Expect = 6e-18
Identities = 62/219 (28%), Positives = 111/219 (50%), Gaps = 17/219 (7%)
Query: 58 RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSP---IDKAQF 114
+L +S K IVG SG+GKS+L ++L G +SG +NG ID+
Sbjct: 487 SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTL 546
Query: 115 RKVSGYVTQRDTLFPLLTVEETLMFSAKLRL---RLPQAQLRARVKSLVKELGLE-HVAM 170
R+ Y+ Q +F ++ E L+ AK + + A A +K ++ + L +
Sbjct: 547 RQFINYLPQEPYIFS-GSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTEL 605
Query: 171 ARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETR 230
+ G ISGG+++R+++ ++ D KVLILDE TS LD+ + +I++ L + +
Sbjct: 606 SEEGSS----ISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQD-- 659
Query: 231 GRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLL 269
+T+I H+ + K + I++L +G ++ G+ D L
Sbjct: 660 -KTIIFVAHR--LSVAKQSDKIIVLDHGKIIEQGSHDEL 695
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 83.6 bits (207), Expect = 7e-18
Identities = 68/218 (31%), Positives = 108/218 (49%), Gaps = 25/218 (11%)
Query: 58 RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI---DKAQ- 113
+ VL+ VS K E +A++G SG GKS+L +L G +P G+ G P+ ++AQ
Sbjct: 25 QTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQR 84
Query: 114 --FRKVSGYVTQRDTLF---PLLTVEETLMFSAKLR--LRLPQAQLRARVKSLVKELGLE 166
FR+ V Q D++ P TV E + LR L L +A+ AR +++ + L+
Sbjct: 85 KAFRRDIQMVFQ-DSISAVNPRKTVREII--REPLRHLLSLDKAERLARASEMLRAVDLD 141
Query: 167 HVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVM 226
V D R +SGG+ +RV + + +PK+LILDE S LD +I +LK +
Sbjct: 142 ----DSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKL 197
Query: 227 AETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHG 264
+ G + H R+V+ F +M V+ +G
Sbjct: 198 QQQFGTACLFITHD--LRLVERFCQRVM-----VMDNG 228
|
Length = 268 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 84.1 bits (208), Expect = 8e-18
Identities = 63/246 (25%), Positives = 119/246 (48%), Gaps = 32/246 (13%)
Query: 75 AIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI-----DKA--QFRKVSGYVTQRDTL 127
AIVG +G+GKS+L++ + L P +G+ V+ I DK RK G V Q
Sbjct: 37 AIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQ---- 92
Query: 128 FP---LL--TVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGIS 182
FP L TVE ++F K ++ +++ L+ +LG M++ +S
Sbjct: 93 FPESQLFEDTVEREIIFGPK-NFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQ----MS 147
Query: 183 GGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPG 242
GG+ R+++I + +P +++LDEPT+GLD S Q++ +LK + +T+IL H
Sbjct: 148 GGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN 207
Query: 243 FRIVKMFNSILMLANGSVLHHGTVDLLSVSLRMMGLQLPMHVNVVEFAIESIDLIQEQRK 302
+ + + ++++ GS++ + L + + ++ I +++Q Q
Sbjct: 208 -EVARYADEVIVMKEGSIVSQTSPKELFKDKK----------KLADWHIGLPEIVQLQYD 256
Query: 303 IQQENQ 308
+Q+ Q
Sbjct: 257 FEQKYQ 262
|
Length = 286 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 86.4 bits (214), Expect = 9e-18
Identities = 63/227 (27%), Positives = 106/227 (46%), Gaps = 13/227 (5%)
Query: 27 FKIFTKNQLNDDHHAQEELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSS 86
+ + ++ + +SK + D GV + +D VS + K EI IVG SGAGK++
Sbjct: 267 VEKECEVEVGEPIIKVRNVSKRYISVDR-GVVKAVDNVSLEVKEGEIFGIVGTSGAGKTT 325
Query: 87 LLEILAGKLTPQSGSTFV----------NGSPIDKAQFRKVSGYVTQRDTLFPLLTVEET 136
L +I+AG L P SG V P + + ++ G + Q L+P TV +
Sbjct: 326 LSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDN 385
Query: 137 LMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVI 196
L + + L LP R + +K +G + + D +S GER RV++ +I
Sbjct: 386 L--TEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLI 443
Query: 197 HDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGF 243
+P+++ILDEPT +D + + + + E +T I+ H F
Sbjct: 444 KEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDF 490
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 83.3 bits (206), Expect = 1e-17
Identities = 67/242 (27%), Positives = 109/242 (45%), Gaps = 49/242 (20%)
Query: 58 RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKV 117
R +L +S + +P + A++G +GAGKS+LL+ LAG LT G G+ +V
Sbjct: 14 RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLT---GGGAPRGA--------RV 62
Query: 118 SGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRA---RVKSLV-------------- 160
+G VT PL ++ + A+LR LPQA A + +V
Sbjct: 63 TGDVTLNGE--PLAAIDAPRL--ARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGAL 118
Query: 161 --KELGLEHVAMARVGDDRVRG-----ISGGERRRVSIG---------FDVIHDPKVLIL 204
++ + A+A G + G +SGGE RV D P+ L+L
Sbjct: 119 THRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLL 178
Query: 205 DEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHG 264
DEPT+ LD +++D ++ +A V+ +H P + + I MLA+G+++ HG
Sbjct: 179 DEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNL-AARHADRIAMLADGAIVAHG 237
Query: 265 TV 266
Sbjct: 238 AP 239
|
Length = 272 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 85.3 bits (212), Expect = 2e-17
Identities = 46/195 (23%), Positives = 89/195 (45%), Gaps = 22/195 (11%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFR 115
+ VS + EIL I G GAG++ L L G SG ++G P+ R
Sbjct: 270 SGGGKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVR---IR 326
Query: 116 KVS-------GYVT---QRDTLFPLLTVEETLMFSAKLRLR----LPQAQLRARVKSLVK 161
YV + + L +++ E + ++ R + + + RA + ++
Sbjct: 327 SPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIR 386
Query: 162 ELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIID 221
L ++ + + + +SGG +++V + + DPKVLILDEPT G+D + +I
Sbjct: 387 RLRIKTPSP----EQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYR 442
Query: 222 MLKVMAETRGRTVIL 236
+++ +A G+ +++
Sbjct: 443 LIRELAA-EGKAILM 456
|
Length = 500 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.3 bits (201), Expect = 2e-17
Identities = 62/213 (29%), Positives = 96/213 (45%), Gaps = 26/213 (12%)
Query: 43 EELSKLEEAADSDGVR-RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGS 101
+SK GVR VL VS E + + GPSG+GKS+LL L P G
Sbjct: 8 SNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQ 67
Query: 102 TFVN--GSPIDKAQF---------RKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQA 150
V G +D R GYV+Q + P ++ + + L +P+
Sbjct: 68 ILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPL-LARGVPRE 126
Query: 151 QLRARVKSLVKELGLE----HVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDE 206
RA+ L+ L L +A A SGGE++RV+I I D +L+LDE
Sbjct: 127 VARAKAADLLTRLNLPERLWSLAPAT--------FSGGEQQRVNIARGFIVDYPILLLDE 178
Query: 207 PTSGLDSTSALQIIDMLKVMAETRGRTVILSIH 239
PT+ LD+T+ ++++++ A+ RG ++ H
Sbjct: 179 PTASLDATNRAVVVELIR-EAKARGAALVGIFH 210
|
Length = 235 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 81.9 bits (203), Expect = 3e-17
Identities = 57/205 (27%), Positives = 93/205 (45%), Gaps = 32/205 (15%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGS-TFVN--GSPIDKA 112
G R+ VS P E+L IVG SG+GK++LL L+ +L P +G + G D
Sbjct: 17 GPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLY 76
Query: 113 Q---------FRKVSGYVTQ--RDTLFPLLT----VEETLMFSAKL---RLRLPQAQLRA 154
R G+V Q RD L ++ + E LM +R
Sbjct: 77 ALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLE 136
Query: 155 RVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDST 214
RV+ + AR+ DD SGG ++R+ I +++ P+++ +DEPT GLD +
Sbjct: 137 RVE----------IDAARI-DDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVS 185
Query: 215 SALQIIDMLKVMAETRGRTVILSIH 239
+++D+L+ + G V++ H
Sbjct: 186 VQARLLDLLRGLVRELGLAVVIVTH 210
|
Length = 258 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.9 bits (203), Expect = 3e-17
Identities = 53/184 (28%), Positives = 80/184 (43%), Gaps = 41/184 (22%)
Query: 53 DSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKA 112
+ +DGVS K E L +VG SG GKS+L ++ G P SG G I K
Sbjct: 21 GKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITK- 79
Query: 113 QFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMAR 172
L + + R RV L++++GL + R
Sbjct: 80 ----------------------------------LSKEERRERVLELLEKVGLPEEFLYR 105
Query: 173 VGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLD-STSALQIIDMLKVMAETRG 231
+SGG+R+R+ I + +PK+++ DEP S LD S A QI+++LK + E G
Sbjct: 106 ----YPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQA-QILNLLKDLQEELG 160
Query: 232 RTVI 235
T +
Sbjct: 161 LTYL 164
|
Length = 268 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 81.4 bits (201), Expect = 4e-17
Identities = 53/212 (25%), Positives = 97/212 (45%), Gaps = 24/212 (11%)
Query: 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI---DKAQFRK 116
VL VS + E + ++G SG GKS+L +L G P G+ G + D+ Q R
Sbjct: 26 VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRA 85
Query: 117 VSGYVTQRD----------TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLE 166
+RD + P +TV + + + L +++ +AR+ L+ +GL
Sbjct: 86 F-----RRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLR 140
Query: 167 HVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVM 226
+ D R +SGG+ +R++I + PK+++LDE S LD I+++L+ +
Sbjct: 141 ----SEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKL 196
Query: 227 AETRGRTVILSIHQPGFRIVKMFNSILMLANG 258
+ G + H R+V+ F + + +
Sbjct: 197 QQAFGTAYLFITHD--LRLVQSFCQRVAVMDK 226
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 84.3 bits (209), Expect = 4e-17
Identities = 74/241 (30%), Positives = 118/241 (48%), Gaps = 40/241 (16%)
Query: 55 DGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI---DK 111
D R +L+G+S + +AIVG SGAGKS++L +L SGS ++G I +
Sbjct: 273 DPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQ 332
Query: 112 AQFRKVSGYVTQRDTLF------------PLLTVEETLMFSAKLRLRLPQAQLRARVKSL 159
R+ G V Q LF P T E + +A+ AQ+ ++SL
Sbjct: 333 QSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDAT-AEEVGAAAEA------AQIHDFIQSL 385
Query: 160 VKELGLEHVAMARVGDDRVRG--ISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSAL 217
+ G + VG+ RG +SGGE++RV+I ++ +P +LILDE TS LD+ +
Sbjct: 386 PE--GYD----TGVGE---RGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQ 436
Query: 218 QIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSVSLRMMG 277
I L+ ++ GRT ++ H+ + + I++L NG ++ GT + L L G
Sbjct: 437 AIQAALREVS--AGRTTLVIAHR--LSTIIDADEIIVLDNGRIVERGTHEEL---LAAGG 489
Query: 278 L 278
L
Sbjct: 490 L 490
|
Length = 497 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 82.1 bits (203), Expect = 4e-17
Identities = 68/293 (23%), Positives = 133/293 (45%), Gaps = 57/293 (19%)
Query: 59 RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGST---FVNGSP------- 108
+ LD VS + E +AI+G +G+GK++ +E L L P +G+ F +
Sbjct: 21 KALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEK 80
Query: 109 --------IDKAQFRKVS---------GYVTQ--RDTLFPLLTVEETLMFSAKLRLRLPQ 149
I K +F+K+ G V Q LF T+E+ ++F + + + +
Sbjct: 81 EKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFE-QTIEKDIIFGP-VSMGVSK 138
Query: 150 AQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTS 209
+ + R ++ +GL+ + R +SGG++RRV++ + +P L+ DEPT+
Sbjct: 139 EEAKKRAAKYIELVGLDESYLQR----SPFELSGGQKRRVALAGILAMEPDFLVFDEPTA 194
Query: 210 GLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHG-TVDL 268
GLD +I+++ + + +G+T+IL H +++ + +G ++ G T D+
Sbjct: 195 GLDPQGVKEILEIFDNLNK-QGKTIILVTHDLD-NVLEWTKRTIFFKDGKIIKDGDTYDI 252
Query: 269 LS------------------VS-LRMMGLQLPMHVNVVEFAIESIDLIQEQRK 302
LS V+ L G+ +P ++ E A E ++++ K
Sbjct: 253 LSDNKFLIENNMEPPKLLNFVNKLEKKGIDVPKVTSIEELASEINMYLEKKNK 305
|
Length = 305 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.3 bits (201), Expect = 4e-17
Identities = 67/242 (27%), Positives = 122/242 (50%), Gaps = 29/242 (11%)
Query: 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGS-TF 103
L + + G + VS P E+L IVG SG+GK++LL+ ++G+LTP +G+ T+
Sbjct: 6 LLSVSGLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTY 65
Query: 104 VN--GSPID-----KAQFRKVS----GYVTQ--RDTLFPLLT----VEETLMFSAKLRLR 146
G P D +A+ R++ G+V Q RD L ++ + E LM
Sbjct: 66 RMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHY- 124
Query: 147 LPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDE 206
+RA + ++E+ ++ + R+ DD R SGG ++R+ I +++ P+++ +DE
Sbjct: 125 ---GNIRAEAQDWLEEVEID---LDRI-DDLPRTFSGGMQQRLQIARNLVTRPRLVFMDE 177
Query: 207 PTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILM-LANGSVLHHGT 265
PT GLD + +++D+L+ + G V++ H + ++ LM + G V+ G
Sbjct: 178 PTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA--VARLLADRLMVMKQGQVVESGL 235
Query: 266 VD 267
D
Sbjct: 236 TD 237
|
Length = 258 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 82.8 bits (205), Expect = 5e-17
Identities = 57/169 (33%), Positives = 90/169 (53%), Gaps = 7/169 (4%)
Query: 72 EILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI-DKAQFRKVSGYVTQRDTLFPL 130
E + VGPSG GKS+LL ++AG SG F+ + D + G V Q L+P
Sbjct: 30 EFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPH 89
Query: 131 LTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVS 190
L+V E + F KL + ++ RV + + L L H+ D + + +SGG+R+RV+
Sbjct: 90 LSVAENMSFGLKLA-GAKKEEINQRVNQVAEVLQLAHLL-----DRKPKALSGGQRQRVA 143
Query: 191 IGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIH 239
IG ++ +P V +LDEP S LD+ +Q+ + + + GRT+I H
Sbjct: 144 IGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTH 192
|
Length = 369 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 81.9 bits (202), Expect = 9e-17
Identities = 66/213 (30%), Positives = 109/213 (51%), Gaps = 15/213 (7%)
Query: 61 LDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNG------SPIDKAQF 114
L+ VS +I ++G SGAGKS+L+ + P SGS V+G S + +
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80
Query: 115 RKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVG 174
R+ G + Q F LL+ T+ + L L L + +K V EL L V +
Sbjct: 81 RRQIGMIFQH---FNLLS-SRTVFGNVALPLEL-DNTPKDEIKRKVTEL-LALVGLGDKH 134
Query: 175 DDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTV 234
D +SGG+++RV+I + +PKVL+ DE TS LD + I+++LK + G T+
Sbjct: 135 DSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTI 194
Query: 235 ILSIHQPGFRIVK-MFNSILMLANGSVLHHGTV 266
+L H+ +VK + + + +++NG ++ GTV
Sbjct: 195 LLITHE--MDVVKRICDCVAVISNGELIEQGTV 225
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 79.9 bits (197), Expect = 1e-16
Identities = 66/223 (29%), Positives = 117/223 (52%), Gaps = 29/223 (13%)
Query: 64 VSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGS-TFVN--GSPID-----KAQFR 115
VS P E+L IVG SG+GKS+LL LAG+L P G+ T++ G+ ++ +A+ R
Sbjct: 22 VSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERR 81
Query: 116 KVS----GYVTQ--RDTLFPLLT----VEETLMFSAKLRLRLPQAQLRARVKSLVKELGL 165
++ G+V Q RD L ++ + E LM +RA + ++E+ +
Sbjct: 82 RLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHY----GNIRATAQDWLEEVEI 137
Query: 166 EHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKV 225
+ R+ DD R SGG ++R+ I +++ P+++ +DEPT GLD + +++D+L+
Sbjct: 138 D---PTRI-DDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRG 193
Query: 226 MAETRGRTVILSIHQPGFRIVKMF-NSILMLANGSVLHHGTVD 267
+ G VI+ H G + ++ +L++ G V+ G D
Sbjct: 194 LVRDLGLAVIIVTHDLG--VARLLAQRLLVMQQGRVVESGLTD 234
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 81.3 bits (201), Expect = 1e-16
Identities = 54/160 (33%), Positives = 89/160 (55%), Gaps = 9/160 (5%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKA--Q 113
G V+D ++ K ++ ++GPSG GK+++L ++AG P G F++G + Q
Sbjct: 17 GSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ 76
Query: 114 FRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARV 173
R + V Q LFP +++ E + + K+ L +P+ + + RVK LE V +A
Sbjct: 77 QRDIC-MVFQSYALFPHMSLGENVGYGLKM-LGVPKEERKQRVKE-----ALELVDLAGF 129
Query: 174 GDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDS 213
D V ISGG+++RV++ +I PKVL+ DEP S LD+
Sbjct: 130 EDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDA 169
|
Length = 351 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 79.5 bits (197), Expect = 1e-16
Identities = 62/207 (29%), Positives = 96/207 (46%), Gaps = 30/207 (14%)
Query: 52 ADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAG--KLTPQSGSTFVNG--- 106
+ +G + +L GV+ K E+ AI+GP+G+GKS+L + G K G +G
Sbjct: 11 VEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDI 70
Query: 107 ---SPIDKAQFRKVSGYVTQRDTLFPLLTVEE--TLMFSAKLRLRLPQAQLRARVKSLVK 161
SP ++A R Q P +T + +A+ R + +K +
Sbjct: 71 LELSPDERA--RAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAE 128
Query: 162 ELGLEHVAMAR-VGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQII 220
LGL+ + R V + G SGGE++R I ++ +PK+ ILDEP SGLD I
Sbjct: 129 LLGLDEEFLERYVNE----GFSGGEKKRNEILQLLLLEPKLAILDEPDSGLD-------I 177
Query: 221 DMLKVMAET------RGRTVILSIHQP 241
D LK++AE GR V++ H
Sbjct: 178 DALKIVAEGINALREEGRGVLIITHYQ 204
|
Length = 251 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 79.8 bits (197), Expect = 2e-16
Identities = 59/217 (27%), Positives = 104/217 (47%), Gaps = 23/217 (10%)
Query: 35 LNDDHHAQEELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGK 94
+ + + + L + R +L +S ++ ++G +G+GKS+LL++L
Sbjct: 1 MQEYTNHSDTTFALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRH 60
Query: 95 LTPQSGSTFVNGSPID----KAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLP-- 148
P G ++ P++ KA RKV+ Y+ Q+ +TV E + R P
Sbjct: 61 QPPSEGEILLDAQPLESWSSKAFARKVA-YLPQQLPAAEGMTVRELVAIG-----RYPWH 114
Query: 149 ------QAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVL 202
A R +V+ + +GL+ +A R+ V +SGGER+R I V D + L
Sbjct: 115 GALGRFGAADREKVEEAISLVGLKPLA-HRL----VDSLSGGERQRAWIAMLVAQDSRCL 169
Query: 203 ILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIH 239
+LDEPTS LD + ++ ++ +++ RG TVI +H
Sbjct: 170 LLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLH 206
|
Length = 265 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 2e-16
Identities = 56/200 (28%), Positives = 94/200 (47%), Gaps = 33/200 (16%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFR 115
GV+ LD +S + ++ A++G +GAGKS+LL+IL+G P +GS ++G + +F
Sbjct: 16 GVK-ALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEM---RFA 71
Query: 116 KV-----SGYVT--QRDTLFPLLTVEETLMFSAKLRLRLPQA-------QLRARVKSLVK 161
+G Q L P +TV E L +LP L + ++
Sbjct: 72 STTAALAAGVAIIYQELHLVPEMTVAENLYLG-----QLPHKGGIVNRRLLNYEAREQLE 126
Query: 162 ELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIID 221
LG++ + +S G+R+ V I + + +V+ DEPTS L SA +I
Sbjct: 127 HLGVDIDPDTPLKY-----LSIGQRQMVEIAKALARNARVIAFDEPTSSL---SAREIEQ 178
Query: 222 MLKVMAETR--GRTVILSIH 239
+ +V+ E R GR ++ H
Sbjct: 179 LFRVIRELRAEGRVILYVSH 198
|
Length = 501 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 79.6 bits (196), Expect = 2e-16
Identities = 51/176 (28%), Positives = 89/176 (50%), Gaps = 21/176 (11%)
Query: 75 AIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVS---GYVTQRDTLFPLL 131
AI+GP+G GKS+LL L+ +TP G +++G I ++V+ G + Q T +
Sbjct: 37 AIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDI 96
Query: 132 TVEETLMFSAKLRLRLPQAQLRAR--------VKSLVKELGLEHVAMARVGDDRVRGISG 183
TV+E + R R P L R V ++ G+ H+A D V +SG
Sbjct: 97 TVQELVA-----RGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLA-----DQSVDTLSG 146
Query: 184 GERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIH 239
G+R+R I + + +++LDEPT+ LD + + ++++L + +G T+ +H
Sbjct: 147 GQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLH 202
|
Length = 265 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 2e-16
Identities = 51/152 (33%), Positives = 76/152 (50%), Gaps = 29/152 (19%)
Query: 73 ILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGS-----------PIDKAQFRKVSGYV 121
I AI G SGAGK+SL+ ++G PQ G +NG P +K R++ GYV
Sbjct: 26 ITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK---RRI-GYV 81
Query: 122 TQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRV-RG 180
Q LFP V L + + A+ +V LG+E + DR
Sbjct: 82 FQDARLFPHYKVRGNLRYGMA-------KSMVAQFDKIVALLGIEPLL------DRYPGS 128
Query: 181 ISGGERRRVSIGFDVIHDPKVLILDEPTSGLD 212
+SGGE++RV+IG ++ P++L++DEP + LD
Sbjct: 129 LSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 80.3 bits (198), Expect = 2e-16
Identities = 53/226 (23%), Positives = 110/226 (48%), Gaps = 27/226 (11%)
Query: 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGST----FVNGSPIDKAQF- 114
L+ +S + +I I+G SG+GKS+L+ G + + G+ G + +
Sbjct: 41 ALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELI 100
Query: 115 -----RKVSGYVTQRDTL-----FPLL-----TVEETLMFSAKLRLRLPQAQLRARVKSL 159
+K+ + R + FP T+E+ +MF + L + +++ + K
Sbjct: 101 TNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMF-GPVALGVKKSEAKKLAKFY 159
Query: 160 VKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQI 219
+ ++GL+ + R G+SGG++RRV+I + P++LI DEPT+GLD ++
Sbjct: 160 LNKMGLDDSYLER----SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEM 215
Query: 220 IDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGT 265
+ ++ A+ +TV + H ++++ + ++++ G +L GT
Sbjct: 216 MQLILD-AKANNKTVFVITHTME-HVLEVADEVIVMDKGKILKTGT 259
|
Length = 320 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.3 bits (201), Expect = 2e-16
Identities = 67/248 (27%), Positives = 115/248 (46%), Gaps = 19/248 (7%)
Query: 27 FKIFTKNQLNDDHHAQEELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSS 86
+KIF KN + SK E + V V + S + EI I+G SG+GKS+
Sbjct: 11 YKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGV-NDASLDVEEGEIFVIMGLSGSGKST 69
Query: 87 LLEILAGKLTPQSGSTFVNG---SPIDKAQFRKVS----GYVTQRDTLFPLLTVEETLMF 139
L+ +L + P G V+G + + A+ R++ V Q L P TV E + F
Sbjct: 70 LVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAF 129
Query: 140 SAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDP 199
+++ +P+A+ R ++ +GLE A D +SGG ++RV + + +DP
Sbjct: 130 GLEVQ-GVPKAEREERALEALELVGLEGYA-----DKYPNELSGGMQQRVGLARALANDP 183
Query: 200 KVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIH--QPGFRIVKMFNSILMLAN 257
+L++DE S LD ++ D L + +T++ H RI + I ++ +
Sbjct: 184 DILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIG---DRIAIMKD 240
Query: 258 GSVLHHGT 265
G ++ GT
Sbjct: 241 GEIVQVGT 248
|
Length = 386 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 79.3 bits (195), Expect = 2e-16
Identities = 59/212 (27%), Positives = 106/212 (50%), Gaps = 16/212 (7%)
Query: 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSG 119
VL G++ + +VG +G GKS+L L+G L PQ G+ G P+D ++ R +
Sbjct: 16 VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSK-RGLLA 74
Query: 120 YVTQRDTLFP-------LLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMAR 172
Q T+F ++ + FS + L +P+A++ RV L V
Sbjct: 75 LRQQVATVFQDPEQQIFYTDIDSDIAFSLR-NLGVPEAEITRRVDE-----ALTLVDAQH 128
Query: 173 VGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGR 232
++ +S G+++RV+I ++ + L+LDEPT+GLD Q+I +++ + +G
Sbjct: 129 FRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVA-QGN 187
Query: 233 TVILSIHQPGFRIVKMFNSILMLANGSVLHHG 264
VI+S H I ++ +++ +L G +L HG
Sbjct: 188 HVIISSHDIDL-IYEISDAVYVLRQGQILTHG 218
|
Length = 271 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 78.9 bits (194), Expect = 2e-16
Identities = 62/234 (26%), Positives = 113/234 (48%), Gaps = 24/234 (10%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEIL--AGKLTPQ---SGSTFVNGSPI- 109
G ++ + V+ + + A++GPSG GK++ L + LTP +G ++G I
Sbjct: 15 GDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIY 74
Query: 110 ----DKAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSL-VKELG 164
D R+ G V Q+ FP ++V + ++ KL A +R R + V E
Sbjct: 75 GPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKL------AGIRDRDHLMEVAERS 128
Query: 165 LEHVAMARVGDDRVR----GISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQII 220
L A+ DR++ G+SGG+++R+ I + +P++L++DEPTS LD S +I
Sbjct: 129 LRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIE 188
Query: 221 DMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSVSLR 274
D+ M + + T I+ + + ++ ++ G ++ HG D L + R
Sbjct: 189 DL---MTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLFTNPR 239
|
Length = 252 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 77.9 bits (193), Expect = 3e-16
Identities = 57/216 (26%), Positives = 95/216 (43%), Gaps = 24/216 (11%)
Query: 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNG---SPIDKAQFRK 116
VL +S KP E + IVG +G+GKSSLL L + SGS ++G S I R
Sbjct: 19 VLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRS 78
Query: 117 VSGYVTQRDTLFPLLTVEETL----MFS-AKLRLRLPQAQLRARVKSLVKELGLEHVAMA 171
+ Q LF T+ L +S +L L + L+ V+SL L
Sbjct: 79 RISIIPQDPVLFS-GTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVV---- 133
Query: 172 RVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRG 231
++ +S G+R+ + + ++ K+L+LDE T+ +D + I ++ +
Sbjct: 134 ---EEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIR--EAFKD 188
Query: 232 RTVILSIHQPGFRI--VKMFNSILMLANGSVLHHGT 265
TV+ H R+ + + IL+L G V+ +
Sbjct: 189 CTVLTIAH----RLDTIIDSDRILVLDKGRVVEFDS 220
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 80.5 bits (198), Expect = 4e-16
Identities = 65/248 (26%), Positives = 120/248 (48%), Gaps = 15/248 (6%)
Query: 27 FKIFTKNQLNDDHHAQEELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSS 86
+KIF ++ + ++ LSK E+ + G+ + S + EI I+G SG+GKS+
Sbjct: 11 YKIFGEHPQRAFKYIEQGLSK-EQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKST 69
Query: 87 LLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVS----GYVTQRDTLFPLLTVEETLMF 139
++ +L + P G ++G I K A+ R+V V Q L P +TV + F
Sbjct: 70 MVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAF 129
Query: 140 SAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDP 199
+L + + R + ++++GLE+ A + + +SGG R+RV + + +P
Sbjct: 130 GMELA-GINAEERREKALDALRQVGLENYAHSYPDE-----LSGGMRQRVGLARALAINP 183
Query: 200 KVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGS 259
+L++DE S LD ++ D L + RT++ H +++ + I ++ NG
Sbjct: 184 DILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD-EAMRIGDRIAIMQNGE 242
Query: 260 VLHHGTVD 267
V+ GT D
Sbjct: 243 VVQVGTPD 250
|
Length = 400 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 78.5 bits (194), Expect = 4e-16
Identities = 59/183 (32%), Positives = 102/183 (55%), Gaps = 11/183 (6%)
Query: 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKA---QFRK 116
L VS + E +AI+G +G+GKS++ +IL G L PQSG ++G I K + RK
Sbjct: 24 ALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRK 83
Query: 117 VSGYVTQR-DTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGD 175
G + Q D F TVE+ + F + + ++P +++ + L K++G+E D
Sbjct: 84 KIGIIFQNPDNQFIGATVEDDIAFGLENK-KVPPKKMKDIIDDLAKKVGMEDYL-----D 137
Query: 176 DRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVI 235
+ +SGG+++RV+I + +P+++I DE TS LD +I ++ + +TR +T+I
Sbjct: 138 KEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLI 197
Query: 236 LSI 238
SI
Sbjct: 198 -SI 199
|
Length = 271 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 78.1 bits (192), Expect = 4e-16
Identities = 57/207 (27%), Positives = 103/207 (49%), Gaps = 21/207 (10%)
Query: 47 KLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEIL--AGKLTPQ---SGS 101
KLE+ G + VS + AI+GPSG GKS++L + L P +G
Sbjct: 6 KLEQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGK 65
Query: 102 TFVNGSPI-----DKAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARV 156
++ + I D R+ G V Q+ FP +++ + ++ KL R+ +++ V
Sbjct: 66 ILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIV 125
Query: 157 KSLVKELGLEHVAMARVGDDRVRG----ISGGERRRVSIGFDVIHDPKVLILDEPTSGLD 212
+S L+ VA+ DR++ +SGG+++R+ I + P+V+++DEP S LD
Sbjct: 126 ES-----SLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALD 180
Query: 213 STSALQIIDMLKVMAETRGRTVILSIH 239
S L+I ++++ + E T+I+ H
Sbjct: 181 PISTLKIEELIEELKEK--YTIIIVTH 205
|
Length = 252 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 82.4 bits (203), Expect = 5e-16
Identities = 63/200 (31%), Positives = 103/200 (51%), Gaps = 17/200 (8%)
Query: 44 ELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTF 103
EL+K+ S V R+ GV +P E ++G +GAGK++ ++L G T SG
Sbjct: 1942 ELTKVYSGTSSPAVDRLCVGV----RPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDAT 1997
Query: 104 VNGSPI--DKAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVK 161
V G I + + + GY Q D + LLT E L A+LR +P ++ ++
Sbjct: 1998 VAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLR-GVPAEEIEKVANWSIQ 2056
Query: 162 ELGLEHVAMARVGDDRVRGI-SGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQII 220
LGL A DR+ G SGG +R++S +I P +++LDEPT+G+D + +
Sbjct: 2057 SLGLSLYA------DRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLW 2110
Query: 221 D-MLKVMAETRGRTVILSIH 239
+ ++ ++ E GR V+L+ H
Sbjct: 2111 NTIVSIIRE--GRAVVLTSH 2128
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 78.1 bits (192), Expect = 5e-16
Identities = 49/179 (27%), Positives = 93/179 (51%), Gaps = 14/179 (7%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNG--------- 106
+ ++G+S ++ AI+GPSG GKS+ ++ L +++ G V G
Sbjct: 18 NTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTL-NRISELEGPVKVEGVVDFFGQNI 76
Query: 107 --SPIDKAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELG 164
I+ + R+ G V QR FP+ ++ E + + ++ +LPQA L V+S +K
Sbjct: 77 YDPRININRLRRQIGMVFQRPNPFPM-SIYENVAYGVRISAKLPQADLDEIVESALKGAA 135
Query: 165 LEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDML 223
L ++ + G+SGG+++R+ I + PKVL++DEP S LD + +++ +++
Sbjct: 136 LWQEVKDKL-NKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELI 193
|
Length = 259 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 78.6 bits (193), Expect = 5e-16
Identities = 53/192 (27%), Positives = 102/192 (53%), Gaps = 15/192 (7%)
Query: 58 RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQ------SGSTFVNGSPI-- 109
+ VLD VS + +++GP+G+GK++ L L ++ + SG + G I
Sbjct: 34 KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTL-NRMNDKVSGYRYSGDVLLGGRSIFN 92
Query: 110 --DKAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEH 167
D +FR+ G + QR FP+ ++ + ++ + +P+ + R ++ + E+GL
Sbjct: 93 YRDVLEFRRRVGMLFQRPNPFPM-SIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWD 151
Query: 168 VAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMA 227
R+ D R +SGG+++ + + + +P+VL+LDEPTS LD T+ +I + ++ +A
Sbjct: 152 AVKDRLSDSPFR-LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLA 210
Query: 228 ETRGRTVILSIH 239
+ TVI+ H
Sbjct: 211 DR--LTVIIVTH 220
|
Length = 276 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 80.9 bits (200), Expect = 5e-16
Identities = 61/222 (27%), Positives = 107/222 (48%), Gaps = 23/222 (10%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSL-LEILAGKLTPQSGSTFVNGSPIDKAQF 114
V+ +S +P E L +VG SG+GKS+ L +L +L G + +G P+
Sbjct: 297 DHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALL--RLINSQGEIWFDGQPLHNLNR 354
Query: 115 RKVSGYVTQRDTLF--------PLLTVEETLMFSAKLRLRLPQ---AQLRARVKSLVKEL 163
R++ + +F P L V + + LR+ P AQ +V ++++E+
Sbjct: 355 RQLLPVRHRIQVVFQDPNSSLNPRLNVLQ--IIEEGLRVHQPTLSAAQREQQVIAVMEEV 412
Query: 164 GLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDML 223
GL+ R + SGG+R+R++I +I P ++ILDEPTS LD T QI+ +L
Sbjct: 413 GLDPETRHRYPAE----FSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALL 468
Query: 224 KVMAETRGRTVILSIHQPGFRIVK-MFNSILMLANGSVLHHG 264
K + + + H +V+ + + +++L G V+ G
Sbjct: 469 KSLQQKHQLAYLFISHD--LHVVRALCHQVIVLRQGEVVEQG 508
|
Length = 529 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 75.9 bits (188), Expect = 7e-16
Identities = 49/187 (26%), Positives = 81/187 (43%), Gaps = 46/187 (24%)
Query: 57 VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRK 116
V+ + VS + + EI+ I G G G++ L E L G P SG ++G P+ + R
Sbjct: 12 VKGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRD 71
Query: 117 VS----GYVT---QRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVA 169
YV +R+ L L+V E + S+ L
Sbjct: 72 AIRAGIAYVPEDRKREGLVLDLSVAENIALSSLL-------------------------- 105
Query: 170 MARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAET 229
SGG +++V + + DP+VLILDEPT G+D + +I +++ +A+
Sbjct: 106 ------------SGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELAD- 152
Query: 230 RGRTVIL 236
G+ V+L
Sbjct: 153 AGKAVLL 159
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 79.1 bits (196), Expect = 7e-16
Identities = 52/166 (31%), Positives = 88/166 (53%), Gaps = 21/166 (12%)
Query: 55 DGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQF 114
DG +V+ G+ E + +VGPSG GKS+LL ++AG SG ++ G +++ +
Sbjct: 14 DGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEP 73
Query: 115 RKVSGYVTQRD--------TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLE 166
RD L+P ++V E + + K+R +P+A++ RV + L LE
Sbjct: 74 A-------DRDIAMVFQNYALYPHMSVRENMAYGLKIR-GMPKAEIEERVAEAARILELE 125
Query: 167 HVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLD 212
+ D + R +SGG+R+RV++G ++ +P V + DEP S LD
Sbjct: 126 PLL-----DRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLD 166
|
Length = 356 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 79.1 bits (196), Expect = 8e-16
Identities = 61/189 (32%), Positives = 98/189 (51%), Gaps = 18/189 (9%)
Query: 61 LDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNG------SPIDKAQF 114
L+ VS EI ++G SGAGKS+L+ + P SG V+G S + +
Sbjct: 21 LNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKA 80
Query: 115 RKVSGYVTQRDTLFPLL---TVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMA 171
R+ G + Q F LL TV + + +L P+A+++ARV L++ +GL A
Sbjct: 81 RRQIGMIFQH---FNLLSSRTVFDNVALPLELA-GTPKAEIKARVTELLELVGLSDKA-- 134
Query: 172 RVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRG 231
D +SGG+++RV+I + +PKVL+ DE TS LD + I+++LK + G
Sbjct: 135 ---DRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELG 191
Query: 232 RTVILSIHQ 240
T++L H+
Sbjct: 192 LTIVLITHE 200
|
Length = 343 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.9 bits (189), Expect = 1e-15
Identities = 62/221 (28%), Positives = 111/221 (50%), Gaps = 15/221 (6%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAG--KLTPQ---SGSTFVNGSPI- 109
G VLDGV+ + I A++GPSG+GKS+LL + +L P+ SG +++G I
Sbjct: 14 GQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIF 73
Query: 110 --DKAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKL-RLRLPQAQLRARVKSLVKELGLE 166
D + R+ V Q P L++ E + KL RL + +L+ RV+ +++ L
Sbjct: 74 KMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLW 133
Query: 167 HVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIID-MLKV 225
R+ + +SGG+++R+ I + P+VL+ DEPT+ LD + +I L++
Sbjct: 134 DEVKDRLDAPAGK-LSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLEL 192
Query: 226 MAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTV 266
+ T++L H P + ++ + + L G ++ G
Sbjct: 193 KKDM---TIVLVTHFPQ-QAARISDYVAFLYKGQIVEWGPT 229
|
Length = 250 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 76.0 bits (188), Expect = 1e-15
Identities = 55/227 (24%), Positives = 97/227 (42%), Gaps = 35/227 (15%)
Query: 47 KLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNG 106
+ G L VS + E + ++G +GAGKS+LL +LAG P SG+ V G
Sbjct: 24 GILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRG 83
Query: 107 ---SPIDKAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVK-- 161
S + P LT E + + +L L L + ++ ++ +++
Sbjct: 84 RVSSLLGLGGG------------FNPELTGRENIYLNGRL-LGLSRKEIDEKIDEIIEFS 130
Query: 162 ELGLEHVAMARVGDDRVRGISGGERRR----VSIGFDVIHDPKVLILDEPTSGLDSTSAL 217
ELG D V+ S G + R ++ +P +L++DE + D+
Sbjct: 131 ELG-------DFIDLPVKTYSSGMKARLAFAIATAL----EPDILLIDEVLAVGDAAFQE 179
Query: 218 QIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHG 264
+ L+ + + +G+TVIL H P I ++ + L+L G + G
Sbjct: 180 KCQRRLRELLK-QGKTVILVSHDPSS-IKRLCDRALVLEKGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 76.9 bits (190), Expect = 1e-15
Identities = 65/250 (26%), Positives = 117/250 (46%), Gaps = 25/250 (10%)
Query: 28 KIFTKN-----QLNDDHHAQEELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGA 82
KIF KN +L ++EE+ L++ + GV V S + EI I+G SG+
Sbjct: 8 KIFGKNPQKAFKLLAKGKSKEEI--LKKTGQTVGVNDV----SLDVREGEIFVIMGLSGS 61
Query: 83 GKSSLLEILAGKLTPQSGSTFVNGSPI---DKAQFRKVS----GYVTQRDTLFPLLTVEE 135
GKS+LL + + P SG ++G I + + R++ V Q L P TV E
Sbjct: 62 GKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLE 121
Query: 136 TLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDV 195
+ F +++ +P+A+ R ++ +GLE +SGG ++RV + +
Sbjct: 122 NVAFGLEVQ-GVPRAEREERAAEALELVGLEGWE-----HKYPDELSGGMQQRVGLARAL 175
Query: 196 IHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILML 255
DP +L++DE S LD ++ D L + +T++ H +++ + I ++
Sbjct: 176 AVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDRIAIM 234
Query: 256 ANGSVLHHGT 265
+G ++ GT
Sbjct: 235 KDGRLVQVGT 244
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 76.6 bits (189), Expect = 1e-15
Identities = 69/229 (30%), Positives = 112/229 (48%), Gaps = 47/229 (20%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFR 115
G R VL+ + + +A+VG SG GKS+LL +LAG TP +G +P+ +A+
Sbjct: 23 GERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAR-- 80
Query: 116 KVSGYVTQRDTLFPLLTVEET-LMFS-AKLRLRLPQAQLRARVKSLVKELGL-------- 165
E+T LMF A+L LP K ++ +GL
Sbjct: 81 ------------------EDTRLMFQDARL---LPW-------KKVIDNVGLGLKGQWRD 112
Query: 166 -EHVAMARVG-DDRVR----GISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQI 219
A+A VG DR +SGG+++RV++ +IH P +L+LDEP LD+ + +++
Sbjct: 113 AALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEM 172
Query: 220 IDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDL 268
D+++ + + G TV+L H V M + +L++ G + TVDL
Sbjct: 173 QDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLIEEGKIGLDLTVDL 220
|
Length = 257 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 3e-15
Identities = 55/164 (33%), Positives = 96/164 (58%), Gaps = 13/164 (7%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK--AQ 113
G +VL+ +S +++A++GPSG+GK++LL I+AG SG +G+ + + A+
Sbjct: 13 GRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHAR 72
Query: 114 FRKVSGYVTQRDTLFPLLTVEETLMFSAKL---RLRLPQAQLRARVKSLVKELGLEHVAM 170
RKV G+V Q LF +TV + + F + R R A ++A+V L++ + L H+A
Sbjct: 73 DRKV-GFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLA- 130
Query: 171 ARVGDDRVRG-ISGGERRRVSIGFDVIHDPKVLILDEPTSGLDS 213
DR +SGG+++RV++ + +P++L+LDEP LD+
Sbjct: 131 -----DRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDA 169
|
Length = 353 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 4e-15
Identities = 54/161 (33%), Positives = 88/161 (54%), Gaps = 17/161 (10%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---A 112
GV VL G+ E+ A++G +GAGKS+L++I+AG + P SG+ + G+P + A
Sbjct: 23 GVE-VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPA 81
Query: 113 QFRKVSGY-VTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLR-ARVKSLVKELGLEHVAM 170
+ ++ Y V Q LFP L+V+E ++F LP+ Q ++K L+ LG +
Sbjct: 82 KAHQLGIYLVPQEPLLFPNLSVKENILF------GLPKRQASMQKMKQLLAALGCQLDLD 135
Query: 171 ARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGL 211
+ G V +R+ V I ++ D ++LILDEPT+ L
Sbjct: 136 SSAGSLEV-----ADRQIVEILRGLMRDSRILILDEPTASL 171
|
Length = 510 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 4e-15
Identities = 58/217 (26%), Positives = 99/217 (45%), Gaps = 26/217 (11%)
Query: 64 VSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVS---GY 120
+S + + EIL +VGP+GAGKS+LL +AG L P SGS G P++ +++ Y
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAG-LLPGSGSIQFAGQPLEAWSAAELARHRAY 73
Query: 121 VTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRG 180
++Q+ T + V + L L P V S + E+ + D R
Sbjct: 74 LSQQQTPPFAMPVFQYLT------LHQPDKTRTEAVASALNEV----AEALGLDDKLGRS 123
Query: 181 I---SGGERRRVSIG--FDVIH-----DPKVLILDEPTSGLDSTSALQIIDMLKVMAETR 230
+ SGGE +RV + + ++L+LDEP + LD + +L + + +
Sbjct: 124 VNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQ-Q 182
Query: 231 GRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVD 267
G V++S H ++ + + +L G +L G D
Sbjct: 183 GIAVVMSSHDLN-HTLRHADRVWLLKQGKLLASGRRD 218
|
Length = 248 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 4e-15
Identities = 63/220 (28%), Positives = 110/220 (50%), Gaps = 22/220 (10%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFR 115
G R+ L GV+ +P E+ + G SGAGKS+LL+++ G P +G + +G I + + R
Sbjct: 13 GGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNR 72
Query: 116 KVSGYVTQRDTLFP--LLTVEETLMFSAKLRLRLPQAQ---LRARVKSLVKELGLEHVAM 170
+V Q +F L ++ T+ + + L + A +R RV + + ++GL
Sbjct: 73 EVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLL---- 128
Query: 171 ARVGDDRVRG----ISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVM 226
D+ + +SGGE++RV I V++ P VL+ DEPT LD + I+ + +
Sbjct: 129 -----DKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEF 183
Query: 227 AETRGRTVILSIHQPGFRIVKMFNSILMLANGSVL--HHG 264
G TV+++ H G I + +L L++G + G
Sbjct: 184 NRV-GVTVLMATHDIGL-ISRRSYRMLTLSDGHLHGGVGG 221
|
Length = 222 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 76.2 bits (188), Expect = 5e-15
Identities = 53/176 (30%), Positives = 87/176 (49%), Gaps = 18/176 (10%)
Query: 59 RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNG------SPIDKA 112
+ LDGVS + + LA+VG SG GKS+L +L TP G + G P +
Sbjct: 29 KALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQK 88
Query: 113 QFRKVSGYVTQR--DTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGL--EHV 168
R+ V Q +L P V + L + L A+ R + +++ ++GL EH
Sbjct: 89 LLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHY 148
Query: 169 AMARVGDDRVRGI-SGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDML 223
DR + SGG+R+R++I ++ DP V++ DEP S LD + Q+++++
Sbjct: 149 -------DRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLM 197
|
Length = 327 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 6e-15
Identities = 59/198 (29%), Positives = 96/198 (48%), Gaps = 16/198 (8%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNG--------- 106
G V+ GV K + A++GPSG GKS+LL +L + V G
Sbjct: 15 GSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTF-NRLLELNEEARVEGEVRLFGRNI 73
Query: 107 -SP-IDKAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKL-RLRLPQAQLRARVKSLVKEL 163
SP +D + R+ G V Q FP LT+ + + KL L + +L RV+ +K+
Sbjct: 74 YSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKA 133
Query: 164 GLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDML 223
L R+ +D +SGG+R+R+ I + PK+L++DEPT+ +D +I ++L
Sbjct: 134 ALWDEVKDRL-NDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELL 192
Query: 224 KVMAETRGRTVILSIHQP 241
+ + T++L H P
Sbjct: 193 FELKKE--YTIVLVTHSP 208
|
Length = 253 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 74.7 bits (183), Expect = 7e-15
Identities = 54/218 (24%), Positives = 111/218 (50%), Gaps = 15/218 (6%)
Query: 58 RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGS---------P 108
+ +L ++ K I I+GPSG+GKS+LL++L + V+G
Sbjct: 23 KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQ 82
Query: 109 IDKAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHV 168
ID + RK G V Q+ FP L++ + + + K + +++ V+ ++++GL
Sbjct: 83 IDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKE 142
Query: 169 AMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAE 228
R+ + +SGG+++R++I + PKVL++DEPTS +D ++ + K++ E
Sbjct: 143 VYDRL-NSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQ---AIEKLITE 198
Query: 229 TRGR-TVILSIHQPGFRIVKMFNSILMLANGSVLHHGT 265
+ +++ H P ++ ++ + + L NG ++ G+
Sbjct: 199 LKNEIAIVIVSHNPQ-QVARVADYVAFLYNGELVEWGS 235
|
Length = 257 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 8e-15
Identities = 62/215 (28%), Positives = 99/215 (46%), Gaps = 13/215 (6%)
Query: 59 RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQ----F 114
+ L VS EI+ ++G +GAGK++LL L G SG +G I Q
Sbjct: 19 QALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIM 78
Query: 115 RKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVG 174
R+ V + +F +TVEE L R + V L L +
Sbjct: 79 REAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRI------ 132
Query: 175 DDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTV 234
R +SGGE++ ++IG ++ P++L+LDEP+ GL QI D ++ + E +G T+
Sbjct: 133 -QRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRE-QGMTI 190
Query: 235 ILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLL 269
L + Q + +K+ + +L NG V+ T D L
Sbjct: 191 FL-VEQNANQALKLADRGYVLENGHVVLEDTGDAL 224
|
Length = 237 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.9 bits (181), Expect = 1e-14
Identities = 64/198 (32%), Positives = 95/198 (47%), Gaps = 22/198 (11%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEIL--AGKLTPQ---SGSTFVNGSPI- 109
G L G+ EI A++GPSG GKS+ L L L P +G+ + G I
Sbjct: 16 GKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIY 75
Query: 110 ----DKAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGL 165
D Q RK G V Q+ FP ++ E +++ LRL + +A + V E L
Sbjct: 76 APNEDVVQLRKQVGMVFQQPNPFPF-SIYENVIYG----LRLAGVKDKAVLDEAV-ETSL 129
Query: 166 EHVAMARVGDDRVR----GISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIID 221
+ A+ D + +SGG+++RV I + P V++LDEPTS LD S+ QI +
Sbjct: 130 KQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIEN 189
Query: 222 MLKVMAETRGRTVILSIH 239
ML + + T+IL H
Sbjct: 190 MLLELRDQ--YTIILVTH 205
|
Length = 252 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.7 bits (182), Expect = 1e-14
Identities = 50/182 (27%), Positives = 87/182 (47%), Gaps = 16/182 (8%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTF----------VN 105
G + L ++ ++ A++GPSG GKS+LL L G+ +
Sbjct: 18 GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIY 77
Query: 106 GSPIDKAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGL 165
+D + R+ G V Q+ FP+ ++ + + + +L + +L V+S +K+ L
Sbjct: 78 DPKVDVVELRRRVGMVFQKPNPFPM-SIYDNVAYGLRLH-GIKDKELDEIVESSLKKAAL 135
Query: 166 EHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQI---IDM 222
R+ G+SGG+++R+ I + P+VL++DEPTS LD S L+I I
Sbjct: 136 WDEVKDRL-HKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITE 194
Query: 223 LK 224
LK
Sbjct: 195 LK 196
|
Length = 253 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 74.4 bits (183), Expect = 1e-14
Identities = 55/195 (28%), Positives = 96/195 (49%), Gaps = 11/195 (5%)
Query: 50 EAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI 109
E+ + + LD V+ + K E L I+G +G+GKS++ + + L P G +V+G
Sbjct: 15 ESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDT 74
Query: 110 DKAQ----FRKVSGYVTQR-DTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELG 164
+ R +G V Q D VEE + F + L +P ++R RV +
Sbjct: 75 SDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPE-NLGIPPEEIRERV-----DES 128
Query: 165 LEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLK 224
L+ V M +SGG+++RV+I + P+ +I DEPT+ LD + ++++ +K
Sbjct: 129 LKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIK 188
Query: 225 VMAETRGRTVILSIH 239
+ + G T+IL H
Sbjct: 189 ELNKKYGITIILITH 203
|
Length = 280 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.7 bits (181), Expect = 2e-14
Identities = 58/217 (26%), Positives = 108/217 (49%), Gaps = 23/217 (10%)
Query: 61 LDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI-----DKA--Q 113
LD +S + + +A+VG +G+GKS+L++ L P SG+ + G I +K +
Sbjct: 23 LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKK 82
Query: 114 FRKVSGYVTQRDTLFPLL-----TVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHV 168
RK V Q FP TV + + F K + + + + +K++GL
Sbjct: 83 LRKKVSLVFQ----FPEAQLFENTVLKDVEFGPK-NFGFSEDEAKEKALKWLKKVGLSED 137
Query: 169 AMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAE 228
+++ + +SGG+ RRV+I + ++P++L LDEP +GLD +++ + K +
Sbjct: 138 LISKSPFE----LSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDY-Q 192
Query: 229 TRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGT 265
G TVIL H + + + +L+L +G ++ H +
Sbjct: 193 KAGHTVILVTHNMD-DVAEYADDVLVLEHGKLIKHAS 228
|
Length = 287 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.9 bits (179), Expect = 4e-14
Identities = 65/249 (26%), Positives = 115/249 (46%), Gaps = 18/249 (7%)
Query: 55 DGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGS-TFVNGSPIDKAQ 113
D + L+ +S A++G +G+GKS++ +++ G L P + + I
Sbjct: 17 DSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTA 76
Query: 114 -----FRKVSGYVTQR-DTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEH 167
R+ G V Q D F TV + + F + R A R + +V+++ L
Sbjct: 77 KTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR-----AVPRPEMIKIVRDV-LAD 130
Query: 168 VAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMA 227
V M D +SGG+++RV+I + +PK++ILDE TS LD QI+ +++ +
Sbjct: 131 VGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLK 190
Query: 228 ETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGT-VDLLS--VSLRMMGLQLPMHV 284
+ TVI H M + +L+L +G +L G+ V++ S L+ +GL +P
Sbjct: 191 KKNNLTVISITHD--IDEANMADQVLVLDDGKLLAQGSPVEIFSKVEMLKEIGLDIPFVY 248
Query: 285 NVVEFAIES 293
+ E
Sbjct: 249 KLKNKLKEK 257
|
Length = 282 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 4e-14
Identities = 58/220 (26%), Positives = 106/220 (48%), Gaps = 21/220 (9%)
Query: 58 RRVLDGVSCKAKPWEILAIVGPSGAGKS----SLLEILAGKLTPQSGSTFVNGSPIDKAQ 113
+ ++ GVS + +LA+VG SG+GKS + L IL + +G ++G P+
Sbjct: 16 QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCA 75
Query: 114 FR-KVSGYVTQ--RDTLFPLLT----VEETLMFSAKLRLRLPQAQLRARVKSLVKELGLE 166
R + + Q R PL T ET + K A L A ++ +GLE
Sbjct: 76 LRGRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPA---DDATLTA----ALEAVGLE 128
Query: 167 HVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVM 226
+ A RV +SGG +R+ I ++ + +I DEPT+ LD + +I+D+L+ +
Sbjct: 129 NAA--RVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESI 186
Query: 227 AETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTV 266
+ R ++L H G + ++ + + ++++G ++ G V
Sbjct: 187 VQKRALGMLLVTHDMGV-VARLADDVAVMSHGRIVEQGDV 225
|
Length = 254 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 4e-14
Identities = 64/217 (29%), Positives = 107/217 (49%), Gaps = 19/217 (8%)
Query: 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQF----R 115
VL G++ P E++A+VGPSG+GKS++ +L P G ++G P+ + R
Sbjct: 496 VLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHR 555
Query: 116 KVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKE---LGLEHVAMAR 172
+V V Q LF +V E + + P ++ A K+ + +
Sbjct: 556 QV-ALVGQEPVLFS-GSVRENIAYGLT---DTPDEEIMAAAKAANAHDFIMEFPNGYDTE 610
Query: 173 VGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGR 232
VG+ + +SGG+++R++I ++ P+VLILDE TS LD+ + +L+ R
Sbjct: 611 VGEKGSQ-LSGGQKQRIAIARALVRKPRVLILDEATSALDA----ECEQLLQESRSRASR 665
Query: 233 TVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLL 269
TV+L H+ V+ + IL+L GSV+ GT L
Sbjct: 666 TVLLIAHR--LSTVERADQILVLKKGSVVEMGTHKQL 700
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 4e-14
Identities = 59/191 (30%), Positives = 93/191 (48%), Gaps = 25/191 (13%)
Query: 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSP---IDKAQFRK 116
+++ S +P + +A+VG SG+GKS++ +++AG P SG +G P I +
Sbjct: 494 LIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLAN 553
Query: 117 VSGYVTQRDTLFPLLTVEETL-MFSAKLRLRLPQAQL-RARVKSLVKELGLEHVAMARVG 174
V Q LF TV + L ++ + P A L RA K+ + V +R G
Sbjct: 554 SVAMVDQDIFLFEG-TVRDNLTLWDPTI----PDADLVRA-----CKDAAIHDVITSRPG 603
Query: 175 --DDRV----RGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAE 228
D + +SGG+R+R+ I ++ +P +LILDE TS LD + I D L+
Sbjct: 604 GYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLR---- 659
Query: 229 TRGRTVILSIH 239
RG T I+ H
Sbjct: 660 RRGCTCIIVAH 670
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 74.4 bits (183), Expect = 6e-14
Identities = 66/230 (28%), Positives = 110/230 (47%), Gaps = 23/230 (10%)
Query: 57 VRRVLDGVSCKAKPWEILAIVGPSGAGKS-SLLEILAGKLTPQ------SGSTFVNGSPI 109
VR V++ VS + + E LA+VG SG+GKS + L IL +L P SG +G +
Sbjct: 21 VRTVVNDVSLQIEAGETLALVGESGSGKSVTALSIL--RLLPSPPVVYPSGDIRFHGESL 78
Query: 110 ---DKAQFRKVSG----YVTQRD--TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLV 160
+ R V G + Q +L PL T+E+ L L + + R + + +
Sbjct: 79 LHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCL 138
Query: 161 KELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQII 220
+G+ A R+ D +SGGER+RV I ++ P++LI DEPT+ LD + QI+
Sbjct: 139 DRVGIRQAA-KRLTD-YPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQIL 196
Query: 221 DMLKVMAETRGRTVILSIHQPGFRIV-KMFNSILMLANGSVLHHGTVDLL 269
+L+ + + ++ H IV K+ + + ++ NG + L
Sbjct: 197 QLLRELQQELNMGLLFITHN--LSIVRKLADRVAVMQNGRCVEQNRAATL 244
|
Length = 529 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 74.1 bits (183), Expect = 7e-14
Identities = 54/202 (26%), Positives = 89/202 (44%), Gaps = 24/202 (11%)
Query: 51 AADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI- 109
D GV V D VS + + EI+ I G +G G+S L+E ++G P SG +NG +
Sbjct: 265 VKDRRGVTAVKD-VSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVL 323
Query: 110 ---DKAQFRKVS-GYVT---QRDTLFPLLTVEETLM--------FSAKLRLRLPQAQLRA 154
+ R++ YV L L++ E L+ FS L R
Sbjct: 324 GRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAI--RK 381
Query: 155 RVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDST 214
+ L++E + A D R +SGG ++++ + ++ P +LI +PT GLD
Sbjct: 382 FARELIEEFDVR----APSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVG 437
Query: 215 SALQIIDMLKVMAETRGRTVIL 236
+ I + L + G+ V+L
Sbjct: 438 AIEFIHERL-LELRDAGKAVLL 458
|
Length = 501 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 8e-14
Identities = 54/169 (31%), Positives = 84/169 (49%), Gaps = 23/169 (13%)
Query: 73 ILAIVGPSGAGKSSLLEILAG--KLTPQ---SGSTFVNGSPI-----DKAQFRKVSGYVT 122
+ A +GPSG GKS+LL +L P+ G ++G I D A R G V
Sbjct: 41 VTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVF 100
Query: 123 QRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVR--- 179
Q+ T FP+ ++ + + F +L +L +A++ RV E L A+ D++
Sbjct: 101 QKPTPFPM-SIYDNIAFGVRLFEKLSRAEMDERV-----EWALTKAALWNEVKDKLHQSG 154
Query: 180 -GISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQI---IDMLK 224
+SGG+++R+ I + P+VL+LDEP S LD S +I I LK
Sbjct: 155 YSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK 203
|
Length = 260 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 70.6 bits (173), Expect = 1e-13
Identities = 54/210 (25%), Positives = 93/210 (44%), Gaps = 24/210 (11%)
Query: 65 SCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVS---GYV 121
S + + EIL +VGP+GAGKS+LL +AG +T SGS G P++ +++ Y+
Sbjct: 19 SGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSGSGSIQFAGQPLEAWSATELARHRAYL 77
Query: 122 TQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGI 181
+Q+ T + V L + R A +L +LG +
Sbjct: 78 SQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALDDKLG-----------RSTNQL 126
Query: 182 SGGERRRVSIGFDVIH-------DPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTV 234
SGGE +RV + V+ ++L+LDEP + LD + +L + + G +
Sbjct: 127 SGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQ-GLAI 185
Query: 235 ILSIHQPGFRIVKMFNSILMLANGSVLHHG 264
++S H ++ + +L G +L G
Sbjct: 186 VMSSHDLN-HTLRHAHRAWLLKRGKLLASG 214
|
Length = 248 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 2e-13
Identities = 60/182 (32%), Positives = 82/182 (45%), Gaps = 27/182 (14%)
Query: 69 KPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLF 128
+P E L I G SGAGK+SLL LAG L P P D A ++ QR
Sbjct: 417 RPGERLLITGESGAGKTSLLRALAG-LWPWGSGRI--SMPADSALL-----FLPQR-PYL 467
Query: 129 PLLTVEETLMFSAKLRLRLPQAQLRARVKSLVK---ELGLEHVA--MARVGD-DRVRGIS 182
P T+ E L P A LV ++GL +A + DRV +S
Sbjct: 468 PQGTLREAL--------CYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRV--LS 517
Query: 183 GGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPG 242
GGE++R++ ++H PK + LDE TS LD + ++ +LK E TVI H+P
Sbjct: 518 GGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLK--EELPDATVISVGHRPT 575
Query: 243 FR 244
Sbjct: 576 LW 577
|
Length = 604 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.7 bits (173), Expect = 2e-13
Identities = 53/187 (28%), Positives = 92/187 (49%), Gaps = 20/187 (10%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEIL--AGKLTPQ---SGSTFVNGSPI- 109
G L ++ E+ AI+GPSG GKS+ ++ L ++ P +G NGS I
Sbjct: 23 GQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNIL 82
Query: 110 ----DKAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGL 165
D + RK G V Q+ FP ++ + + + ++ + +L+ V E L
Sbjct: 83 KGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGTKNKKKLQEIV-----EKSL 136
Query: 166 EHVAMARVGDDRVR----GISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIID 221
+ VA+ DR+ +SGG+++R+ I + +P VL++DEPTS LD S +I +
Sbjct: 137 KDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEE 196
Query: 222 MLKVMAE 228
++ + E
Sbjct: 197 LILKLKE 203
|
Length = 259 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 70.6 bits (173), Expect = 2e-13
Identities = 48/207 (23%), Positives = 91/207 (43%), Gaps = 11/207 (5%)
Query: 39 HHAQEELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQ 98
+ L + + + G R + D +S +I AI+GPSG GK++LL ++ G++ P
Sbjct: 1 EQSVANLVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPD 60
Query: 99 SGSTFVNGSPIDKA------QFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQL 152
G +G I RK + Q LF + V + + + + +LP L
Sbjct: 61 HGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLL 120
Query: 153 RARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLD 212
+ V ++ +GL A + +SGG RR ++ + +P +++ DEP G D
Sbjct: 121 HSTVMMKLEAVGLRGAAKLMPSE-----LSGGMARRAALARAIALEPDLIMFDEPFVGQD 175
Query: 213 STSALQIIDMLKVMAETRGRTVILSIH 239
+ ++ ++ + G T ++ H
Sbjct: 176 PITMGVLVKLISELNSALGVTCVVVSH 202
|
Length = 269 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.3 bits (172), Expect = 2e-13
Identities = 56/222 (25%), Positives = 113/222 (50%), Gaps = 21/222 (9%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLL--------EILAGKLTPQSGSTFVNGS 107
G ++ + V+ K +I AI+GPSG GK++LL I ++ G + G
Sbjct: 14 GEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRV---EGKIYFKGQ 70
Query: 108 PI-----DKAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKE 162
I D ++RK G V Q+ T FP+ ++ + + F ++ + +L V+ +K+
Sbjct: 71 DIYDPQLDVTEYRKKVGMVFQKPTPFPM-SIYDNVAFGPRIHGVKSKHKLDRIVEESLKK 129
Query: 163 LGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDM 222
L + + + +SGG+++R+ I + +P+V++LDEPTS LD + +I +
Sbjct: 130 AALWDEVKSEL-NKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKL 188
Query: 223 LKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHG 264
L+ ++E T+++ H G + +++ + I + G ++ +G
Sbjct: 189 LEELSEN--YTIVIVTHNIG-QAIRIADYIAFMYRGELIEYG 227
|
Length = 250 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 73.2 bits (180), Expect = 2e-13
Identities = 65/220 (29%), Positives = 107/220 (48%), Gaps = 19/220 (8%)
Query: 53 DSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKA 112
DS R L ++ ++AIVG +G GK+SL+ + G+L P+S ++ V
Sbjct: 625 DSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVV-------- 676
Query: 113 QFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRA-RVKSLVKELG-LEHVAM 170
R YV Q +F TV + ++F + P+ RA V +L +L L +
Sbjct: 677 -IRGTVAYVPQVSWIFNA-TVRDNILFGSPFD---PERYERAIDVTALQHDLDLLPGGDL 731
Query: 171 ARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETR 230
+G+ V ISGG+++RVS+ V + V I D+P S LD+ Q+ D + E R
Sbjct: 732 TEIGERGV-NISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKC-IKDELR 789
Query: 231 GRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270
G+T +L +Q F + + I+++ G + GT + LS
Sbjct: 790 GKTRVLVTNQLHF--LSQVDRIILVHEGMIKEEGTYEELS 827
|
Length = 1622 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 67.8 bits (167), Expect = 3e-13
Identities = 42/181 (23%), Positives = 73/181 (40%), Gaps = 60/181 (33%)
Query: 59 RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVS 118
+ LDGVS + E+ A++G +GAGKS+L++IL+G P SG V+G + A
Sbjct: 14 KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFAS----- 68
Query: 119 GYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEH---VAMARVGD 175
P+ RA + ++V +L + V +AR
Sbjct: 69 -----------------------------PRDARRAGI-AMVYQLSVGERQMVEIARA-- 96
Query: 176 DRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVI 235
+ + ++LILDEPT+ L ++ +++ + +G VI
Sbjct: 97 -------------------LARNARLLILDEPTAALTPAEVERLFKVIRRLRA-QGVAVI 136
Query: 236 L 236
Sbjct: 137 F 137
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 3e-13
Identities = 49/170 (28%), Positives = 85/170 (50%), Gaps = 11/170 (6%)
Query: 64 VSCKAKPWEILAIVGPSGAGKSSLLEIL--AGKLTPQS---GSTFVN-----GSPIDKAQ 113
V+ +P + A +GPSG GKS++L L ++ P + G ++ G +D
Sbjct: 23 VNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVA 82
Query: 114 FRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARV 173
R+ G V QR FP +++ + ++ KL + L V+ ++ L + R+
Sbjct: 83 VRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRL 142
Query: 174 GDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDML 223
D G+SGG+++R+ I + +P VL++DEP S LD S L I D++
Sbjct: 143 -DKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLI 191
|
Length = 258 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 3e-13
Identities = 68/253 (26%), Positives = 114/253 (45%), Gaps = 29/253 (11%)
Query: 29 IFTKNQ-----LNDDHHAQEELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAG 83
+F L D +EE+ L+ GV S + EI ++G SG+G
Sbjct: 9 VFGDQPDEALALLDQGKTREEI--LDRTGLVLGV----HNASLDIEEGEICVLMGLSGSG 62
Query: 84 KSSLLE-------ILAGKLTPQSGSTFVNGSPIDKAQFRKVS----GYVTQRDTLFPLLT 132
KS+LL + G + + G V+ + D A R++ V Q+ L P T
Sbjct: 63 KSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATLRRLRTHRVSMVFQQFALLPWRT 122
Query: 133 VEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIG 192
VEE + F +++ +P+A+ R RV LE V +A+ D + +SGG ++RV +
Sbjct: 123 VEENVAFGLEMQ-GMPKAERRKRVDEQ-----LELVGLAQWADRKPGELSGGMQQRVGLA 176
Query: 193 FDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSI 252
+ +L++DEP S LD Q+ D L + +T++ H +K+ N I
Sbjct: 177 RAFATEAPILLMDEPFSALDPLIRTQLQDELLELQSKLKKTIVFVSHDLD-EALKIGNRI 235
Query: 253 LMLANGSVLHHGT 265
++ G ++ HGT
Sbjct: 236 AIMEGGRIIQHGT 248
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 69.9 bits (171), Expect = 4e-13
Identities = 59/218 (27%), Positives = 110/218 (50%), Gaps = 15/218 (6%)
Query: 61 LDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPID--KAQFRKVS 118
+ VS + + LAI+G +G+GKS+L ++LAG + P SG +N P+ FR
Sbjct: 29 VKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKR 88
Query: 119 GYVTQRD---TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGL--EHVAMARV 173
+ +D +L P L + + L F +L L Q R ++ ++ +GL +H
Sbjct: 89 IRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANY--- 145
Query: 174 GDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRT 233
++ G+++RV++ +I PK++I DE + LD + Q+I+++ + E +G +
Sbjct: 146 ---YPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGIS 202
Query: 234 VILSIHQPGFRIVKMFNSILMLANGSVLHHG-TVDLLS 270
I G I + + +L++ G V+ G T D+L+
Sbjct: 203 YIYVTQHIGM-IKHISDQVLVMHEGEVVERGSTADVLA 239
|
Length = 267 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 4e-13
Identities = 55/233 (23%), Positives = 96/233 (41%), Gaps = 31/233 (13%)
Query: 42 QEELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGS 101
++ L L + L +S + E + I+G +GAGKS+LL+++AG P SG
Sbjct: 24 KKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGK 83
Query: 102 TFVNG---SPIDKAQ-FRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVK 157
V G I+ F P LT E LR + R +
Sbjct: 84 VKVTGKVAPLIELGAGFD-------------PELTGREN----IYLRGLIL-GLTRKEID 125
Query: 158 SLVKELGLEHVAMARVGDDR---VRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDST 214
V E+ + A +GD V+ S G R++ +P +L+LDE + D+
Sbjct: 126 EKVDEI----IEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAA 181
Query: 215 SALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVD 267
+ ++ L + E + +T++L H G I + + + L +G + G+ +
Sbjct: 182 FQEKCLERLNELVE-KNKTIVLVSHDLGA-IKQYCDRAIWLEHGQIRMEGSPE 232
|
Length = 249 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.0 bits (174), Expect = 8e-13
Identities = 59/250 (23%), Positives = 114/250 (45%), Gaps = 27/250 (10%)
Query: 43 EELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGST 102
+ S G L V+ P EI A++G +GAGKS+L+++L+G P G+
Sbjct: 3 TPYISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTI 62
Query: 103 FVNGSPIDKAQFRKVS----GYVTQRDTLFPLLTVEETLMFSAKLRLR-------LPQAQ 151
+N +K + + G + Q ++ LTV E L + + + + +
Sbjct: 63 TINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENL-YIGRHLTKKVCGVNIIDWRE 121
Query: 152 LRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGL 211
+R R ++ +GL V + D++V +S ++ + I ++ D KV+I+DEPTS L
Sbjct: 122 MRVRAAMMLLRVGL-KVDL----DEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSL 176
Query: 212 DSTSALQ---IIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDL 268
+ I++ L+ G ++ H+ I ++ + ++ +GS + G V
Sbjct: 177 TNKEVDYLFLIMNQLR----KEGTAIVYISHKLA-EIRRICDRYTVMKDGSSVCSGMVSD 231
Query: 269 LSVS--LRMM 276
+S +R+M
Sbjct: 232 VSNDDIVRLM 241
|
Length = 510 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 9e-13
Identities = 58/198 (29%), Positives = 96/198 (48%), Gaps = 30/198 (15%)
Query: 58 RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI-------D 110
R L V+ + A +G +G+GKS+++++L G P GS V+ + I D
Sbjct: 20 GRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKD 79
Query: 111 KAQFRKVSGYVTQRDTLFPLLTV-EETLMFSAKLRLRLPQ----AQLRARVKSLVKELGL 165
Q RK G V Q FP + EET++ PQ +Q A + L
Sbjct: 80 IKQIRKKVGLVFQ----FPESQLFEETVLKDVAFG---PQNFGVSQEEA------EALAR 126
Query: 166 EHVAMARVGDDRVRG----ISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIID 221
E +A+ + + +SGG+ RRV+I + +PK+L+LDEPT+GLD +++
Sbjct: 127 EKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMT 186
Query: 222 MLKVMAETRGRTVILSIH 239
+ K + ++ G T++L H
Sbjct: 187 LFKKLHQS-GMTIVLVTH 203
|
Length = 280 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 1e-12
Identities = 64/239 (26%), Positives = 105/239 (43%), Gaps = 48/239 (20%)
Query: 58 RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAG--KLTPQSGSTFVNGSPIDKAQFR 115
+ +L GV+ K EI AI+GP+G+GKS+L + +AG SG+ G + +
Sbjct: 13 KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLE---- 68
Query: 116 KVSGYVTQRDTLF---------PLLTVEETLMFSAKLRLR------LPQAQLRARVKSLV 160
+ R LF P ++ E L + R L +K+ +
Sbjct: 69 -LEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKL 127
Query: 161 KELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQII 220
LG++ + R ++ G SGGE++R I + +PK+ ILDE SGLD I
Sbjct: 128 ALLGMDEEFLNRSVNE---GFSGGEKKRNEILQMALLEPKLAILDEIDSGLD-------I 177
Query: 221 DMLKVMAE------TRGRTVILSIHQPGFRIVKMFNSI-----LMLANGSVLHHGTVDL 268
D LK++AE R+ ++ H ++ N I +L +G ++ G V+L
Sbjct: 178 DALKIVAEGINRLREPDRSFLIITHYQ-----RLLNYIKPDYVHVLLDGRIVKSGDVEL 231
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 1e-12
Identities = 52/183 (28%), Positives = 86/183 (46%), Gaps = 10/183 (5%)
Query: 61 LDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVS-- 118
L VS + +IVG +G+GKS++ +++ G +SG F N I F K+
Sbjct: 25 LKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKH 84
Query: 119 -GYVTQR-DTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDD 176
G V Q D F V+ + F + +P ++ RV L+ V M D
Sbjct: 85 IGIVFQNPDNQFVGSIVKYDVAFGLENHA-VPYDEMHRRVSEA-----LKQVDMLERADY 138
Query: 177 RVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVIL 236
+SGG+++RV+I + +P V+ILDE TS LD + ++D+++ + T+I
Sbjct: 139 EPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIIS 198
Query: 237 SIH 239
H
Sbjct: 199 ITH 201
|
Length = 269 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.9 bits (168), Expect = 1e-12
Identities = 51/220 (23%), Positives = 107/220 (48%), Gaps = 23/220 (10%)
Query: 59 RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI--------D 110
+ L+ S K ++ ++G +G+GKS+++++ G + ++G T V I +
Sbjct: 25 KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84
Query: 111 KAQFRKVSGYVTQRDTLFPLL-----TVEETLMFSAKLRLRLPQAQLRARVKSLVKELGL 165
+ RK G V Q FP T+E+ + F + L + + +V L+K + L
Sbjct: 85 VKRLRKEIGLVFQ----FPEYQLFQETIEKDIAF-GPVNLGENKQEAYKKVPELLKLVQL 139
Query: 166 EHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKV 225
+ R + +SGG++RRV++ + D L+LDEPT GLD I++ +
Sbjct: 140 PEDYVKRSPFE----LSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFER 195
Query: 226 MAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGT 265
+ + + +I+ H +++++ + ++++ G V+ G+
Sbjct: 196 LNKEYKKRIIMVTHNMD-QVLRIADEVIVMHEGKVISIGS 234
|
Length = 289 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 70.6 bits (174), Expect = 1e-12
Identities = 53/165 (32%), Positives = 80/165 (48%), Gaps = 23/165 (13%)
Query: 72 EILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLL 131
E++ IVGP+G GK++ ++LAG L P G +D K+S Y Q
Sbjct: 366 EVIGIVGPNGIGKTTFAKLLAGVLKPDEGE-------VDPEL--KIS-YKPQYIKPDYDG 415
Query: 132 TVEETLMFSAKLRLRLPQAQLRARVKS-LVKELGLEHVAMARVGDDRVRGISGGERRRVS 190
TVE+ L S L KS ++K L LE R+ D V+ +SGGE +RV+
Sbjct: 416 TVEDLLR-SITDDLGSSY------YKSEIIKPLQLE-----RLLDKNVKDLSGGELQRVA 463
Query: 191 IGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVI 235
I + D + +LDEP++ LD L + ++ +AE R T +
Sbjct: 464 IAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATAL 508
|
Length = 590 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.7 bits (165), Expect = 2e-12
Identities = 64/225 (28%), Positives = 105/225 (46%), Gaps = 23/225 (10%)
Query: 54 SDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEIL------------AGKLTPQSGS 101
S G L G+S + E+ A++GPSG GKS+ L L G++ + +
Sbjct: 13 SYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQN 72
Query: 102 TFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVK 161
+ GS +D + RK G V Q+ T FP +V + + + K+ + + RV+ +K
Sbjct: 73 IY--GSKMDLVELRKEVGMVFQQPTPFPF-SVYDNVAYGLKIAGVKDKELIDQRVEESLK 129
Query: 162 ELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIID 221
+ + + D + SGG+++R+ I + PKV++LDEPTS LD S+ +I +
Sbjct: 130 QAAIWKETKDNL-DRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEE 188
Query: 222 MLKVMAETRGRTVILSIH--QPGFRIVKMFNSILMLANGSVLHHG 264
L M T I+ H Q RI + L NG ++ G
Sbjct: 189 TL--MELKHQYTFIMVTHNLQQAGRIS---DQTAFLMNGDLIEAG 228
|
Length = 251 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 66.5 bits (162), Expect = 2e-12
Identities = 47/170 (27%), Positives = 82/170 (48%), Gaps = 14/170 (8%)
Query: 73 ILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK--AQFRKVSGYVTQRDTLFPL 130
+L + G +GAGK++LL+++AG L P+ G I K ++K +V R + P
Sbjct: 29 LLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPY 88
Query: 131 LTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVS 190
LT+ E ++ + + + L + LEH+ G +S G++R+V+
Sbjct: 89 LTLRENCLYD------IHFSPGAVGITELCRLFSLEHLIDYPCGL-----LSSGQKRQVA 137
Query: 191 IGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQ 240
+ + K+ +LDEP LD S L II ++ +G V+L+ HQ
Sbjct: 138 LLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEH-RAKGGAVLLTSHQ 186
|
Length = 200 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 2e-12
Identities = 55/222 (24%), Positives = 109/222 (49%), Gaps = 23/222 (10%)
Query: 64 VSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQ 123
+S + + LAI+G +G+GKS+L ++LAG + P SG ++ P+ + Y +Q
Sbjct: 32 LSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS----YRSQ 87
Query: 124 R---------DTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGL--EHVAMAR 172
R +L P + + L F +L L Q ++ ++++GL +H +
Sbjct: 88 RIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYP 147
Query: 173 VGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGR 232
++ G+++R+ + +I PKV+I DE + LD + Q+I+++ + E +G
Sbjct: 148 ------HMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGI 201
Query: 233 TVILSIHQPGFRIVKMFNSILMLANGSVLHHG-TVDLLSVSL 273
+ I G + + + +L++ G V+ G T D+L+ L
Sbjct: 202 SYIYVTQHLGM-MKHISDQVLVMHQGEVVERGSTADVLASPL 242
|
Length = 267 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.6 bits (165), Expect = 2e-12
Identities = 51/174 (29%), Positives = 89/174 (51%), Gaps = 15/174 (8%)
Query: 73 ILAIVGPSGAGKSSLLEIL--AGKLTPQ---SGSTFVNGSPI-----DKAQFRKVSGYVT 122
+ AI+GPSG GKS+ L + L P +G+ +G I D+ RK G V
Sbjct: 67 VTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVF 126
Query: 123 QRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGIS 182
Q+ FP ++ + + + +L + QL V+ +++ L R+ D G+S
Sbjct: 127 QKPNPFPK-SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRL-DKNALGLS 184
Query: 183 GGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVIL 236
GG+++R+ + + +P++L+LDEPTS LD + +I D+++ E RG I+
Sbjct: 185 GGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQ---ELRGSYTIM 235
|
Length = 286 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 4e-12
Identities = 42/166 (25%), Positives = 73/166 (43%), Gaps = 9/166 (5%)
Query: 70 PWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLFP 129
E L + G +GAGK++LL +LAG L +SG ++G + + Y+ L
Sbjct: 36 AGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLPGLKA 95
Query: 130 LLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRV 189
L+ E L F L R + Q+ ++V G E D VR +S G+++R+
Sbjct: 96 DLSTLENLHFLCGLHGRRAK-QMPGSALAIVGLAGYE--------DTLVRQLSAGQKKRL 146
Query: 190 SIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVI 235
++ + + +LDEP + LD + M+ G ++
Sbjct: 147 ALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALV 192
|
Length = 214 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.1 bits (161), Expect = 5e-12
Identities = 52/203 (25%), Positives = 96/203 (47%), Gaps = 18/203 (8%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEIL--AGKLTPQ---SGSTFVNGSPI- 109
G ++ L+ ++ +I A++GPSG GKS+ L L L G ++G I
Sbjct: 15 GEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIY 74
Query: 110 ----DKAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGL 165
D + RK G V Q+ FP+ ++ + + + ++ + +L V+ +K+ L
Sbjct: 75 DKDVDVVELRKRVGMVFQKPNPFPM-SIYDNVAYGPRIHGIKDKKELDKIVEWALKKAAL 133
Query: 166 EHVAMARVGDDRVR---GISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDM 222
V DD + +SGG+++R+ I + P V+++DEPTS LD S L+I D+
Sbjct: 134 ----WDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDL 189
Query: 223 LKVMAETRGRTVILSIHQPGFRI 245
+ + + ++ Q R+
Sbjct: 190 MVELKKEYTIVIVTHNMQQASRV 212
|
Length = 251 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 5e-12
Identities = 64/242 (26%), Positives = 106/242 (43%), Gaps = 34/242 (14%)
Query: 49 EEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKS-SLLEILAGKLTPQSGSTFVNG- 106
+E VR + S + E LAIVG SG+GKS + L ++ +L Q+G
Sbjct: 24 QEQQKIAAVRNL----SFSLQRGETLAIVGESGSGKSVTALALM--RLLEQAGGLVQCDK 77
Query: 107 -------------SPIDKAQFRKVSG------YVTQRDTLFPLLTVEETLMFSAKLRLRL 147
S AQ R V G + +L P+ TV E + S +L
Sbjct: 78 MLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGA 137
Query: 148 PQAQLRARVKSLVKELGL--EHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILD 205
+ + K ++ ++ + ++R +SGG R+RV I + P VLI D
Sbjct: 138 SREEAMVEAKRMLDQVRIPEAQTILSRYPHQ----LSGGMRQRVMIAMALSCRPAVLIAD 193
Query: 206 EPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGT 265
EPT+ LD T QI+ ++KV+ + VI H G + ++ + +L++ G + G+
Sbjct: 194 EPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGV-VAEIADRVLVMYQGEAVETGS 252
Query: 266 VD 267
V+
Sbjct: 253 VE 254
|
Length = 623 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.7 bits (160), Expect = 6e-12
Identities = 59/224 (26%), Positives = 104/224 (46%), Gaps = 27/224 (12%)
Query: 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEIL--AGKLTP---QSGSTFVNGSPI----- 109
+L V+ + A++GPSG GKS+ + L L P G +++G I
Sbjct: 18 ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAV 77
Query: 110 DKAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVA 169
D + RK G V Q+ FP +++ + LR+ ++ V+E L+ A
Sbjct: 78 DVVELRKKVGMVFQKPNPFP-----KSIFDNVAYGLRIHGEDDEDFIEERVEE-SLKAAA 131
Query: 170 MARVGDDRVR----GISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKV 225
+ D++ G+SGG+++R+ I + P+V+++DEP S LD S +I D++
Sbjct: 132 LWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHK 191
Query: 226 MAETRGRTVILSIH--QPGFRIVKMFNSILMLANGSVLHHGTVD 267
+ E T+++ H Q R+ K + L NG ++ G D
Sbjct: 192 LKED--YTIVIVTHNMQQATRVSKYTSFFL---NGEIIESGLTD 230
|
Length = 250 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 6e-12
Identities = 44/168 (26%), Positives = 82/168 (48%), Gaps = 21/168 (12%)
Query: 72 EILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLL 131
E++ I+GP+G GK++ +++LAG + P GS + KVS Y Q +
Sbjct: 368 EVIGILGPNGIGKTTFVKLLAGVIKPDEGSE----------EDLKVS-YKPQYISPDYDG 416
Query: 132 TVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSI 191
TVE+ + + +R + + + VK L LE + + V +SGGE +RV+I
Sbjct: 417 TVED--LLRSAIRSAFGSSYFKTEI---VKPLNLE-----DLLERPVDELSGGELQRVAI 466
Query: 192 GFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIH 239
+ + + +LDEP++ LD + + +++ E +T ++ H
Sbjct: 467 AAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDH 514
|
Length = 591 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 67.6 bits (165), Expect = 9e-12
Identities = 59/228 (25%), Positives = 104/228 (45%), Gaps = 23/228 (10%)
Query: 51 AADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNG---S 107
A S GV VS +AK + +AIVGP+GAGK++L+ +L P G ++G +
Sbjct: 345 ANSSQGVF----DVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDIN 400
Query: 108 PIDKAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEH 167
+ + RK V Q LF ++ E + RL A ++ +
Sbjct: 401 TVTRESLRKSIATVFQDAGLFNR-SIRENI------RLGREGATDEEVYEAAKAAAAHDF 453
Query: 168 VAMARVGDDRVRG-----ISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDM 222
+ G D + G +SGGER+R++I ++ + +L+LDE TS LD + ++ +
Sbjct: 454 ILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNA 513
Query: 223 LKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270
+ + + RT + H+ V+ + +L L G ++ G+ L
Sbjct: 514 IDAL--RKNRTTFIIAHR--LSTVRNADLVLFLDQGRLIEKGSFQELI 557
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 1e-11
Identities = 52/194 (26%), Positives = 90/194 (46%), Gaps = 14/194 (7%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEIL--AGKLTPQS---GSTFVNGSPI- 109
G + L ++ + A++GPSG GKS+LL L P G NG I
Sbjct: 17 GEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIM 76
Query: 110 ----DKAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGL 165
D R+ G V QR FP ++ E + + ++ + L V+ +K L
Sbjct: 77 DSGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAAL 135
Query: 166 EHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKV 225
R+ D + +SGG+++R+ I + +P+V+++DEP S LD + +I D+++
Sbjct: 136 WDEVKDRLHDSAL-SLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIED 194
Query: 226 MAETRGRTVILSIH 239
+ + TVI+ H
Sbjct: 195 LKKE--YTVIIVTH 206
|
Length = 253 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 1e-11
Identities = 59/205 (28%), Positives = 99/205 (48%), Gaps = 32/205 (15%)
Query: 61 LDGVSCKAKPWEILAIVGPSGAGKSSLLEIL--AGKLTPQ---SGSTFVNGSPI-----D 110
L ++ + ++ A++GPSG GKS+ L L L P G ++G I D
Sbjct: 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78
Query: 111 KAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGL-EHVA 169
Q RK G V Q+ FP+ ++ + + + + + +L V+ +K L + V
Sbjct: 79 VNQLRKRVGMVFQQPNPFPM-SIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEV- 136
Query: 170 MARVGDDRVR----GISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQI---IDM 222
DR++ G+SGG+++R+ I + +P+VL++DEPTS LD S L+I I
Sbjct: 137 -----KDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQE 191
Query: 223 LKVMAETRGRTVILSIH--QPGFRI 245
LK + T+++ H Q RI
Sbjct: 192 LK-----KDYTIVIVTHNMQQASRI 211
|
Length = 250 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 68.1 bits (166), Expect = 1e-11
Identities = 60/206 (29%), Positives = 98/206 (47%), Gaps = 27/206 (13%)
Query: 73 ILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLT 132
++AIVG +G GK+SL+ + G+L+ S+ V R YV Q +F T
Sbjct: 645 LVAIVGGTGEGKTSLISAMLGELSHAETSSVV---------IRGSVAYVPQVSWIFNA-T 694
Query: 133 VEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRV----RG--ISGGER 186
V E ++F + + RA + L+H G D RG ISGG++
Sbjct: 695 VRENILFGSDFE---SERYWRA-----IDVTALQHDLDLLPGRDLTEIGERGVNISGGQK 746
Query: 187 RRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIV 246
+RVS+ V + + I D+P S LD+ A Q+ D + E +G+T +L +Q F +
Sbjct: 747 QRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSC-MKDELKGKTRVLVTNQLHF--L 803
Query: 247 KMFNSILMLANGSVLHHGTVDLLSVS 272
+ + I++++ G + GT LS S
Sbjct: 804 PLMDRIILVSEGMIKEEGTFAELSKS 829
|
Length = 1495 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 1e-11
Identities = 57/214 (26%), Positives = 92/214 (42%), Gaps = 42/214 (19%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEIL------------AGKLTPQSGSTF 103
G + LD VS ++ A++GPSG GKS+ L + G+LT
Sbjct: 50 GDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELT--FRGKN 107
Query: 104 VNGSPIDKAQFRKVSGYVTQRDTLFP----------LLTVEETLMFSAKLRLRLPQAQLR 153
V + +D R+ G V Q+ FP L ++ L +A L
Sbjct: 108 VYDADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALW 167
Query: 154 ARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDS 213
VK + GL+ +SGG+++R+ I + DP+V+++DEP S LD
Sbjct: 168 DEVKDQLDSSGLD--------------LSGGQQQRLCIARAIAPDPEVILMDEPASALDP 213
Query: 214 TSALQIIDMLKVMAETRGRTVILSIH--QPGFRI 245
+ +I D+++ +AE TV++ H Q RI
Sbjct: 214 VATSKIEDLIEELAEE--YTVVIVTHNMQQAARI 245
|
Length = 285 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 1e-11
Identities = 60/216 (27%), Positives = 101/216 (46%), Gaps = 32/216 (14%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGS-------- 107
G L GVS + A++GPSG GKS+ L L ++ + + ++GS
Sbjct: 56 GDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCL-NRMNDRIKAARIDGSVELDGQDI 114
Query: 108 ---PIDKAQFRKVSGYVTQRDTLFPLLTVEETLMFSAK--------LRLRLPQAQLRARV 156
++ + RK G V Q FP ++ E + + + L RL +
Sbjct: 115 YQDGVNLVELRKRVGMVFQSPNPFPK-SIRENISYGPRKHGDINTGLLARLLGRDDKDAE 173
Query: 157 KSLVKELGLEHVAM-----ARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGL 211
LV E L A+ R+ D+ + G+SGG+++R+ I + DP+V+++DEP S L
Sbjct: 174 DELV-ERSLRQAALWDEVNDRLDDNAL-GLSGGQQQRLCIARCLAVDPEVILMDEPASAL 231
Query: 212 DSTSALQIIDMLKVMAETRGRTVILSIH--QPGFRI 245
D + +I D+++ +AE TV++ H Q RI
Sbjct: 232 DPIATSKIEDLIEELAEE--YTVVVVTHNMQQAARI 265
|
Length = 305 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.9 bits (158), Expect = 1e-11
Identities = 61/212 (28%), Positives = 98/212 (46%), Gaps = 34/212 (16%)
Query: 72 EILAIVGPSGAGKSSLLEIL------------AGKLTPQSGSTFVNGSPIDKAQFRKVSG 119
++ A++GPSG GKS+LL L GKLT + N ID A R G
Sbjct: 30 QVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGN---IDVADLRIKVG 86
Query: 120 YVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVR 179
V Q+ FP+ ++ E + + + Q +V V E L A+ DR++
Sbjct: 87 MVFQKPNPFPM-SIYENVAYGLR-----AQGIKDKKVLDEVVERSLRGAALWDEVKDRLK 140
Query: 180 ----GISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGR-TV 234
G+SGG+++R+ I + +P V+++DEPTS LD + +I ++ M E + T+
Sbjct: 141 SHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEEL---MEELKKNYTI 197
Query: 235 ILSIH--QPGFRIVKMFNSILMLANGSVLHHG 264
++ H Q RI LM G ++ H
Sbjct: 198 VIVTHSMQQARRISDRTAFFLM---GELVEHD 226
|
Length = 249 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.7 bits (157), Expect = 1e-11
Identities = 49/173 (28%), Positives = 86/173 (49%), Gaps = 12/173 (6%)
Query: 61 LDGVSCKAKPWEILAIVGPSGAGKSSLLEIL--AGKLTPQS---GSTFVNGSPI-DKA-- 112
L G+S + + ++A +GPSG GKS+ L + L P + G ++G I DK
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQ 78
Query: 113 --QFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAM 170
+ RK G V QR FP ++ E + + ++ A +R RV+ +K L
Sbjct: 79 VDELRKNVGMVFQRPNPFPK-SIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVK 137
Query: 171 ARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDML 223
++ + +SGG+++R+ I + P VL++DEP S LD S ++ +++
Sbjct: 138 DKL-KESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELI 189
|
Length = 250 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 1e-11
Identities = 67/234 (28%), Positives = 109/234 (46%), Gaps = 49/234 (20%)
Query: 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQ---FRK 116
L+ V+ KP ++L I GP+G+GKS+LL ++ G + P+ K Q +R
Sbjct: 330 ALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRS 389
Query: 117 VSGYVTQRDTLF------------PLLTVEETLMFSAKLR------LRLPQAQLRARVKS 158
V+Q LF P T +E + A+L LRLPQ
Sbjct: 390 RLAVVSQTPFLFSDTVANNIALGRPDATQQE-IEHVARLASVHDDILRLPQ--------- 439
Query: 159 LVKELGLEHVAMARVGDDRVRGI--SGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSA 216
G + VG+ RG+ SGG+++R+SI ++ + ++LILD+ S +D +
Sbjct: 440 -----GYD----TEVGE---RGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTE 487
Query: 217 LQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270
QI+ L+ E GRTVI+S H+ + + IL++ +G + G D L+
Sbjct: 488 HQILHNLRQWGE--GRTVIISAHR--LSALTEASEILVMQHGHIAQRGNHDQLA 537
|
Length = 569 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.6 bits (157), Expect = 2e-11
Identities = 57/219 (26%), Positives = 99/219 (45%), Gaps = 33/219 (15%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEIL------------AGKLTPQSGSTF 103
G ++ L VS + + A++GPSG GKS+ + L GK++ + +
Sbjct: 23 GEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIY 82
Query: 104 VNGSPIDKAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSL--VK 161
+D + RK G V Q+ FP+ ++ + + + ++ A K L V
Sbjct: 83 --EPDVDVVELRKNVGMVFQKPNPFPM-SIYDNVAYGPRIH--------GANKKDLDGVV 131
Query: 162 ELGLEHVAMARVGDDRVRG----ISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSAL 217
E L A+ DR++ +SGG+++R+ I + PK+++ DEPTS LD S
Sbjct: 132 ENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTA 191
Query: 218 QIIDMLKVMAETRGRTVILSIH--QPGFRIVKMFNSILM 254
+I D+ +M + T+++ H Q RI LM
Sbjct: 192 RIEDL--IMNLKKDYTIVIVTHNMQQAARISDYTGFFLM 228
|
Length = 258 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.1 bits (158), Expect = 2e-11
Identities = 58/217 (26%), Positives = 101/217 (46%), Gaps = 19/217 (8%)
Query: 59 RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQ----- 113
R L + + K A++G +G+GKS+LL+ L G L P G V +
Sbjct: 20 RALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEI 79
Query: 114 --FRKVSGYVTQ--RDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVA 169
RK G V Q LF +++ + +A+ A K LE V
Sbjct: 80 KPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEK-------LEMVG 132
Query: 170 MAR-VGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAE 228
+A + +SGG+ RRV+I + +P+VL+LDEPT+GLD + ++++ + + + +
Sbjct: 133 LADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQ 192
Query: 229 TRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGT 265
+ G+TV+L H + + + +L G ++ GT
Sbjct: 193 S-GQTVVLVTHLMD-DVADYADYVYLLEKGHIISCGT 227
|
Length = 288 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 2e-11
Identities = 45/169 (26%), Positives = 77/169 (45%), Gaps = 21/169 (12%)
Query: 72 EILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPID-KAQFRKVSGYVTQRDTLFPL 130
E++ I+GP+G GK++ +++LAG L P G + + K Q+ K T RD L
Sbjct: 26 EVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLL--- 82
Query: 131 LTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVS 190
S+ + + + K L +E ++ D V +SGGE +RV+
Sbjct: 83 ---------SSITKDFYTHPYFKTEI---AKPLQIE-----QILDREVPELSGGELQRVA 125
Query: 191 IGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIH 239
I + D + +LDEP++ LD L +++ AE +T + H
Sbjct: 126 IAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEH 174
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.3 bits (156), Expect = 2e-11
Identities = 46/192 (23%), Positives = 100/192 (52%), Gaps = 12/192 (6%)
Query: 58 RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEIL------AGKLTPQSGSTFVNGSPIDK 111
+++L+GVS + ++ AI+GPSG GKS+ L+ L ++ + F N + ++
Sbjct: 20 QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYER 79
Query: 112 A----QFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEH 167
+ R+ V + LFP+ +V + + + K+ P+ ++ V+S +K+ L
Sbjct: 80 RVNLNRLRRQVSMVHPKPNLFPM-SVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWD 138
Query: 168 VAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMA 227
++ + +SGG+++R+ I + PKVL++DEP GLD +++++ +++ +
Sbjct: 139 EIKHKIHKSALD-LSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLR 197
Query: 228 ETRGRTVILSIH 239
T+++ H
Sbjct: 198 LRSELTMVIVSH 209
|
Length = 261 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 3e-11
Identities = 61/253 (24%), Positives = 101/253 (39%), Gaps = 56/253 (22%)
Query: 59 RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEIL--------------------------- 91
VL +S + E+L I+G SGAGKS L+ +L
Sbjct: 14 EVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVE 73
Query: 92 ----AGKLTPQSGST-------FVNGSPIDKAQFRKVSGYVTQRD-TLFPLLTVEETLMF 139
G+ P G T F N S + + RK + QR L+ TV + ++
Sbjct: 74 RPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLE 133
Query: 140 SAKLRLRLPQAQLRA-----RVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFD 194
+ L + R L++ + L H R +SGGE++RV +
Sbjct: 134 A------LEEIGYEGKEAVGRAVDLIEMVQLSHRIT-----HIARDLSGGEKQRVVLARQ 182
Query: 195 VIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILM 254
+ +P + + DEPT LD +A + + L+ + G +++L+ H P I + + +
Sbjct: 183 LAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEV-IEDLSDKAIW 241
Query: 255 LANGSVLHHGTVD 267
L NG + GT D
Sbjct: 242 LENGEIKEEGTPD 254
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 3e-11
Identities = 57/183 (31%), Positives = 97/183 (53%), Gaps = 18/183 (9%)
Query: 53 DSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQ---SGSTFVNGSPI 109
GV+ LDG+ + +P E + + G +GAGKS+L++IL+G + P G + +GSP+
Sbjct: 10 TFGGVK-ALDGIDLEVRPGECVGLCGENGAGKSTLMKILSG-VYPHGTWDGEIYWSGSPL 67
Query: 110 DKAQFRKV--SGYVT--QRDTLFPLLTVEETLMFSAKLRL---RLPQAQLRARVKSLVKE 162
+ R +G V Q TL P L+V E + ++ L R+ + R K+L++E
Sbjct: 68 KASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRE 127
Query: 163 LGLEHVAMAR-VGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIID 221
L L+ + R VGD GG+++ V I + ++LILDEP+S L ++D
Sbjct: 128 LQLDADNVTRPVGD-----YGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLD 182
Query: 222 MLK 224
+++
Sbjct: 183 IIR 185
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 64.5 bits (157), Expect = 3e-11
Identities = 63/214 (29%), Positives = 103/214 (48%), Gaps = 32/214 (14%)
Query: 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSG 119
VL ++ K + E+LAI G +G+GK+SLL ++ G+L P G +G ++S
Sbjct: 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG---------RIS- 101
Query: 120 YVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEH-VAMARVGDDRV 178
+ +Q + P T++E ++F R KS+VK LE + D+ V
Sbjct: 102 FSSQFSWIMP-GTIKENIIFGVSYD--------EYRYKSVVKACQLEEDITKFPEKDNTV 152
Query: 179 RG-----ISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIID--MLKVMAETRG 231
G +SGG+R R+S+ V D + +LD P LD + +I + + K+MA
Sbjct: 153 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMAN--- 209
Query: 232 RTVILSIHQPGFRIVKMFNSILMLANGSVLHHGT 265
+T IL + +K + IL+L GS +GT
Sbjct: 210 KTRILVTSK--MEHLKKADKILILHEGSSYFYGT 241
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 3e-11
Identities = 56/227 (24%), Positives = 111/227 (48%), Gaps = 30/227 (13%)
Query: 62 DGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVS--G 119
+ V+ + + EI++++GP+GAGK+++ L G P G+ + G I+ +++ G
Sbjct: 22 NNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81
Query: 120 YVT--QRDTLFPLLTVEETLMFSAKLRL--------------RLPQAQLRARVKSLVKEL 163
V Q LF +TV E L+ + +L R +++ R + ++ +
Sbjct: 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERV 141
Query: 164 GLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLD--STSALQ-II 220
GL A + G+ ++ G++RR+ I ++ P++L+LDEP +GL+ T L +I
Sbjct: 142 GLLEHANRQAGN-----LAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELI 196
Query: 221 DMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVD 267
L+ TV+L H ++ + + I ++ G+ L +GT +
Sbjct: 197 AELR---NEHNVTVLLIEHDMKL-VMGISDRIYVVNQGTPLANGTPE 239
|
Length = 255 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 4e-11
Identities = 53/164 (32%), Positives = 78/164 (47%), Gaps = 16/164 (9%)
Query: 70 PWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLF- 128
P E L++VG SG+GKS+ L + Q G NG ID K+ +RD F
Sbjct: 349 PGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQA--LRRDIQFI 406
Query: 129 ---------PLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVR 179
P TV +++M ++ LP ARV L++ +GL R +
Sbjct: 407 FQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHE--- 463
Query: 180 GISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDML 223
SGG+R+R+ I + +PKV+I DE S LD + QII++L
Sbjct: 464 -FSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLL 506
|
Length = 623 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 4e-11
Identities = 54/231 (23%), Positives = 90/231 (38%), Gaps = 70/231 (30%)
Query: 58 RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAG--KLTPQSGSTFVNGSPIDKAQFR 115
+ +L GV+ K E+ A++GP+G+GKS+L + + G K G G
Sbjct: 13 KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKG--------- 63
Query: 116 KVSGYVTQRDTLFPLLTVEE------TLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVA 169
D L EE L F P + ++ +
Sbjct: 64 --------EDITD--LPPEERARLGIFLAFQY------PPEIPGVKNADFLRYVNE---- 103
Query: 170 MARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAET 229
G SGGE++R I ++ +P + ILDEP SGLD ID L+++AE
Sbjct: 104 ----------GFSGGEKKRNEILQLLLLEPDLAILDEPDSGLD-------IDALRLVAEV 146
Query: 230 ------RGRTVILSIHQPGFRIVKMFNSI-----LMLANGSVLHHGTVDLL 269
G++V++ H ++ + I +L +G ++ G +L
Sbjct: 147 INKLREEGKSVLIITHYQ-----RLLDYIKPDRVHVLYDGRIVKSGDKELA 192
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 5e-11
Identities = 54/167 (32%), Positives = 81/167 (48%), Gaps = 34/167 (20%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFR 115
G + ++D +S K P I+ ++GP+GAGKS+L ++ G+ P SG T G + A
Sbjct: 333 GDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSG-TIKIGETVKLA--- 388
Query: 116 KVSGYVTQ-RDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARV- 173
YV Q RD L P TV E + + ++L + ++ +R A V
Sbjct: 389 ----YVDQSRDALDPNKTVWEEISGGLDI-IQLGKREVPSR---------------AYVG 428
Query: 174 -----GDD---RVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLD 212
G D +V +SGGER RV + + VL+LDEPT+ LD
Sbjct: 429 RFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLD 475
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 6e-11
Identities = 56/188 (29%), Positives = 84/188 (44%), Gaps = 39/188 (20%)
Query: 58 RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKV 117
+ +L +S P + ++G +GAGKS+LL I+AG +G A KV
Sbjct: 18 KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARP-------APGIKV 70
Query: 118 SGYVTQRDTLFPLLTVEETLM---------------FSAKL--------RLRLPQAQLRA 154
GY+ Q L P TV E + SAK L QA+L+
Sbjct: 71 -GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQE 129
Query: 155 RVKSLVKELGLEH---VAMARV----GDDRVRGISGGERRRVSIGFDVIHDPKVLILDEP 207
+ + L+ +AM + D V +SGGERRRV++ ++ P +L+LDEP
Sbjct: 130 IIDA-ADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEP 188
Query: 208 TSGLDSTS 215
T+ LD+ S
Sbjct: 189 TNHLDAES 196
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 7e-11
Identities = 56/181 (30%), Positives = 90/181 (49%), Gaps = 17/181 (9%)
Query: 69 KPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLF 128
+P +++ I+GP+G GKS+ L+ILAG+L P G P ++ G T+ F
Sbjct: 98 RPGKVVGILGPNGIGKSTALKILAGELKPNLGRY--EDPPSWDEVIKRFRG--TELQNYF 153
Query: 129 PLLTVEETLMFSAKLRL--RLPQAQLRARVKSLVK---ELG-----LEHVAMARVGDDRV 178
L E L K + +P+ ++ +V L+K E G +E + + V D V
Sbjct: 154 KKL-YEGELRAVHKPQYVDLIPKV-VKGKVGELLKKVDERGKFDEVVERLGLENVLDRDV 211
Query: 179 RGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSI 238
+SGGE +RV+I ++ D V DEP+S LD L +++ +AE G+ VI+
Sbjct: 212 SELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAED-GKYVIVVE 270
Query: 239 H 239
H
Sbjct: 271 H 271
|
Length = 591 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 1e-10
Identities = 46/182 (25%), Positives = 85/182 (46%), Gaps = 22/182 (12%)
Query: 55 DGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQ---SGSTFVNGSPIDK 111
GV+ LD VS K + EI+++ G +GAGKS+L+++L+G + P G G +
Sbjct: 16 GGVK-ALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSG-VYPHGTYEGEIIFEGEEL-- 71
Query: 112 AQFRKVS-----GYVT--QRDTLFPLLTVEETLMFSAKLRL--RLPQAQLRARVKSLVKE 162
Q + G Q L L+V E + ++ + + R + L+ +
Sbjct: 72 -QASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQ 130
Query: 163 LGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDM 222
L L+ VG+ + G+++ V I + ++LILDEPT+ L + ++D+
Sbjct: 131 LKLDINPATPVGN-----LGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDI 185
Query: 223 LK 224
++
Sbjct: 186 IR 187
|
Length = 506 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 2e-10
Identities = 61/186 (32%), Positives = 89/186 (47%), Gaps = 23/186 (12%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEIL--AGKLTPQ---SGSTFVNGSPI- 109
G ++ L +S + + A +GPSG GKS+LL L G ++G I
Sbjct: 36 GDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIY 95
Query: 110 ----DKAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGL 165
D A+ R+ G V QR FP ++ E +++ LRL Q RV E L
Sbjct: 96 DKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYG----LRL-QGINNRRVLDEAVERSL 149
Query: 166 EHVAMARVGDDRVR----GISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQI-- 219
A+ DR+ G+SGG+++R+ I + +P+VL+LDEPTS LD S L+I
Sbjct: 150 RGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEE 209
Query: 220 -IDMLK 224
I LK
Sbjct: 210 LITELK 215
|
Length = 272 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 2e-10
Identities = 50/191 (26%), Positives = 88/191 (46%), Gaps = 42/191 (21%)
Query: 72 EILAIVGPSGAGKSSLLEI------------LAGKLTPQSGSTFVNGSPIDKAQFRKVSG 119
+I A +GPSG GKS++L + GK+T + + +D + R+ G
Sbjct: 37 QITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKN--LYAPDVDPVEVRRRIG 94
Query: 120 YVTQRDTLFPLLTVEETLMFSAKL-----------RLRLPQAQLRARVKSLVKELGLEHV 168
V Q+ FP ++ + + + A++ L QA L VK +K+ GL
Sbjct: 95 MVFQKPNPFPK-SIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGL--- 150
Query: 169 AMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAE 228
+SGG+++R+ I + P+V+++DEP S LD S L+I +++ + E
Sbjct: 151 -----------SLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE 199
Query: 229 TRGRTVILSIH 239
T+I+ H
Sbjct: 200 Q--YTIIIVTH 208
|
Length = 264 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.6 bits (149), Expect = 2e-10
Identities = 52/185 (28%), Positives = 89/185 (48%), Gaps = 30/185 (16%)
Query: 72 EILAIVGPSGAGKSSLLEI------------LAGKLTPQSGSTFVNGSPIDKAQFRKVSG 119
+I+A +GPSG GKS+LL + G+L + + + S I+ + R+ G
Sbjct: 47 KIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIY--DSQINSVKLRRQVG 104
Query: 120 YVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQ-LRARVKSLVKELGLEHVAMARVGDDRV 178
V QR FP ++ E + F+ P+A + + LV E L A+ D++
Sbjct: 105 MVFQRPNPFPK-SIYENIAFA-------PRANGYKGNLDELV-EDSLRRAAIWEEVKDKL 155
Query: 179 R----GISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTV 234
+ +SGG+++R+ I + P VL++DEP S LD S Q+ ++ + E T+
Sbjct: 156 KEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQ--YTI 213
Query: 235 ILSIH 239
I+ H
Sbjct: 214 IMVTH 218
|
Length = 274 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 2e-10
Identities = 54/214 (25%), Positives = 93/214 (43%), Gaps = 36/214 (16%)
Query: 59 RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVS 118
VL VS K K E + IVG +GAGKS+L+ L L + G ++G I +
Sbjct: 22 PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLR 81
Query: 119 GYVTQRDTLFPLLTVEETLMFSAKLRLRL------PQAQLRARVKSLVKELGLEHVAMAR 172
T+ P ++ +FS +R L ++ ++ V E GL
Sbjct: 82 ----SSLTIIP----QDPTLFSGTIRSNLDPFDEYSDEEIYGALR--VSEGGLN------ 125
Query: 173 VGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGR 232
+S G+R+ + + ++ P+VL+LDE T+ +D + I K + E
Sbjct: 126 --------LSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALI---QKTIREEFTN 174
Query: 233 TVILSI-HQPGFRIVKMFNSILMLANGSVLHHGT 265
+ IL+I H+ R + ++ IL++ G V +
Sbjct: 175 STILTIAHR--LRTIIDYDKILVMDAGEVKEYDH 206
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 2e-10
Identities = 58/196 (29%), Positives = 93/196 (47%), Gaps = 19/196 (9%)
Query: 59 RVLDGVSCKAKPWEILAIVGPSGAGKS-SLLEILA-----GKLTPQSGSTFVNGS---PI 109
R +D +S K E++ IVG SG+GKS S L I+ G++ + NG I
Sbjct: 21 RAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLE--FNGQDLQRI 78
Query: 110 DKAQFRKVSG------YVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKEL 163
+ + R + G + +L P TV +M + K+ + R R L+ ++
Sbjct: 79 SEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQV 138
Query: 164 GLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDML 223
G+ A +R+ D +SGG +RV I + PK+LI DEPT+ LD T QII++L
Sbjct: 139 GIPDPA-SRL-DVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELL 196
Query: 224 KVMAETRGRTVILSIH 239
+ + ++L H
Sbjct: 197 LELQQKENMALVLITH 212
|
Length = 326 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 3e-10
Identities = 51/197 (25%), Positives = 95/197 (48%), Gaps = 20/197 (10%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLL--------EILAGKLTPQ--SGSTFVN 105
G + + G+ + + +I A++GPSG+GKS+ L I ++T Q +N
Sbjct: 31 GKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDIN 90
Query: 106 GSPIDKAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGL 165
I+ + RK G V QR F ++ E + F+ + + L V++ +K+ L
Sbjct: 91 RKEINVYEMRKHIGMVFQRPNPFAK-SIYENITFALERAGVKDKKVLDEIVETSLKQAAL 149
Query: 166 EHVAMARVGDDRVRG---ISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDM 222
+V DD + +SGG+++R+ I + P +L++DEP S LD S +Q+ +
Sbjct: 150 ----WDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEET 205
Query: 223 LKVMAETRGRTVILSIH 239
+ + + T+I+ H
Sbjct: 206 MFELKKN--YTIIIVTH 220
|
Length = 267 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.4 bits (146), Expect = 4e-10
Identities = 51/197 (25%), Positives = 100/197 (50%), Gaps = 9/197 (4%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEI---LAGKLTPQSGSTFVNGSPI--- 109
G ++ L ++ + + +I A++G SG GKS+ L + K+ G + G +
Sbjct: 13 GKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQ 72
Query: 110 DKAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLP-QAQLRARVKSLVKELGLEHV 168
D RK G V Q+ +F + ++ E + ++ KL + + + A V ++++GL
Sbjct: 73 DVVALRKNVGMVFQQPNVF-VKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEE 131
Query: 169 AMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAE 228
++ + + +SGG+++R+ I + PK+L+LDEPTS LD S+ I ++LK ++
Sbjct: 132 VKDKLKQNAL-ALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH 190
Query: 229 TRGRTVILSIHQPGFRI 245
++ Q G R+
Sbjct: 191 NLSMIMVTHNMQQGKRV 207
|
Length = 246 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 4e-10
Identities = 52/182 (28%), Positives = 90/182 (49%), Gaps = 22/182 (12%)
Query: 72 EILAIVGPSGAGKSSLLEIL--AGKLTPQS---GSTFVNGSPI-----DKAQFRKVSGYV 121
++ A++GPSG GKS+ L L L P + G ++G I D + R+ G V
Sbjct: 33 QVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMV 92
Query: 122 TQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVR-- 179
Q+ FP ++ E + + ++ +A L RV E L H A+ DR+
Sbjct: 93 FQKPNPFPK-SIFENVAYGLRVNGVKDKAYLAERV-----ERSLRHAALWDEVKDRLHES 146
Query: 180 --GISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILS 237
G+SGG+++R+ I + +P+VL++DEP S LD + +I +++ + T+I+
Sbjct: 147 ALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKAR--YTIIIV 204
Query: 238 IH 239
H
Sbjct: 205 TH 206
|
Length = 253 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 4e-10
Identities = 58/184 (31%), Positives = 90/184 (48%), Gaps = 24/184 (13%)
Query: 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFV 104
L K+E+ + G R +LD + P + ++G +GAGKS+L+++LAG+L P SG
Sbjct: 312 LLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGE--- 368
Query: 105 NGSPIDKAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELG 164
I A+ K+ GY Q F L E L A+L + + +LR LG
Sbjct: 369 ----IGLAKGIKL-GYFAQHQLEF-LRADESPLQHLARLAPQELEQKLR-------DYLG 415
Query: 165 LEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLK 224
+V ++ R SGGE+ R+ + V P +L+LDEPT+ LD +DM +
Sbjct: 416 GFGFQGDKVTEETRR-FSGGEKARLVLALIVWQRPNLLLLDEPTNHLD-------LDMRQ 467
Query: 225 VMAE 228
+ E
Sbjct: 468 ALTE 471
|
Length = 638 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 58.3 bits (142), Expect = 6e-10
Identities = 56/185 (30%), Positives = 77/185 (41%), Gaps = 53/185 (28%)
Query: 74 LAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTV 133
L I GPSG GKSSL LAG L P GS + G P + ++ QR PL T+
Sbjct: 30 LLITGPSGTGKSSLFRALAG-LWP-WGSGRI-GMPEGEDLL-----FLPQR-PYLPLGTL 80
Query: 134 EETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGF 193
E L++ L SGGE++R++
Sbjct: 81 REQLIYPWDDVL------------------------------------SGGEQQRLAFAR 104
Query: 194 DVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSI-HQPGFRIVKMFNSI 252
++H PK + LDE TS LD S ++ +LK G TVI S+ H+P K + +
Sbjct: 105 LLLHKPKFVFLDEATSALDEESEDRLYQLLK----ELGITVI-SVGHRPSLW--KFHDRV 157
Query: 253 LMLAN 257
L L
Sbjct: 158 LDLDG 162
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 7e-10
Identities = 51/189 (26%), Positives = 95/189 (50%), Gaps = 17/189 (8%)
Query: 62 DGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI---DKAQFRKVS 118
DGV+ + E L +VG SG GKS+ + G + G G + ++R V
Sbjct: 38 DGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVR 97
Query: 119 GYVTQ--RD---TLFPLLTVEETLMFSAKLRL---RLPQAQLRARVKSLVKELGLEHVAM 170
+ +D +L P +T+ E + + LR +L + +++ RVK+++ ++GL +
Sbjct: 98 SDIQMIFQDPLASLNPRMTIGE--IIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLI 155
Query: 171 ARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETR 230
R + SGG+ +R+ I +I +PK++I DEP S LD + Q++++L+ +
Sbjct: 156 NRYPHE----FSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREM 211
Query: 231 GRTVILSIH 239
G ++I H
Sbjct: 212 GLSLIFIAH 220
|
Length = 331 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 1e-09
Identities = 65/216 (30%), Positives = 108/216 (50%), Gaps = 24/216 (11%)
Query: 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRK 116
VL G+S + P E + IVG +GAGKSS+L L + + G ++G I K RK
Sbjct: 1254 VLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRK 1313
Query: 117 VSGYVTQRDTLFPLLTVEETL-MFSAKLRLRLPQAQLRARVKSLVKE--LGLEHVAMARV 173
V G + Q LF TV L F+ L ++ RA +K +++ LGL+ ++
Sbjct: 1314 VLGIIPQAPVLFS-GTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLD-AEVSEA 1371
Query: 174 GDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLD-STSALQIIDMLKVMAET-RG 231
G++ S G+R+ +S+ ++ K+L+LDE T+ +D T AL + K + E +
Sbjct: 1372 GEN----FSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDAL----IQKTIREEFKS 1423
Query: 232 RTVILSIHQPGFRIVKMFNS--ILMLANGSVLHHGT 265
T+++ H R+ + + IL+L G V+ T
Sbjct: 1424 CTMLIIAH----RLNTIIDCDRILVLDAGRVVEFDT 1455
|
Length = 1622 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.9 bits (142), Expect = 1e-09
Identities = 47/183 (25%), Positives = 90/183 (49%), Gaps = 18/183 (9%)
Query: 59 RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTF----------VNGSP 108
+VL ++ +I AI+GPSG GKS+LL L SG+ +
Sbjct: 18 QVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPN 77
Query: 109 IDKAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHV 168
+D RK G V Q+ FP ++ + + F ++ Q++L V+ +++ L
Sbjct: 78 LDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAAL--- 133
Query: 169 AMARVGDDRVR---GISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKV 225
V D+ + +SGG+++R+ I + +P+V+++DEP S LD S ++I ++++
Sbjct: 134 -WDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQE 192
Query: 226 MAE 228
+ +
Sbjct: 193 LKQ 195
|
Length = 251 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 1e-09
Identities = 44/153 (28%), Positives = 73/153 (47%), Gaps = 14/153 (9%)
Query: 69 KPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGS---PIDKAQFRKVSGYVTQ-- 123
+ ++L +VGP+G GKS+ L+ILAGKL P G +D+ + ++ Y T+
Sbjct: 24 REGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLL 83
Query: 124 RDTLFPLLTVEETLM----FSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVR 179
+ ++ + + K+ L + R ++ LV +L L HV D +
Sbjct: 84 EGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVL-----DRNID 138
Query: 180 GISGGERRRVSIGFDVIHDPKVLILDEPTSGLD 212
+SGGE +RV+I + D DEP+S LD
Sbjct: 139 QLSGGELQRVAIAAALARDADFYFFDEPSSYLD 171
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 2e-09
Identities = 48/185 (25%), Positives = 87/185 (47%), Gaps = 20/185 (10%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEIL------------AGKLTPQSGSTF 103
G ++ L V + A +GPSG GKS+ L L GK+T
Sbjct: 30 GEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGED-- 87
Query: 104 VNGSPIDKAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLR-LRLPQAQLRARVKSLVKE 162
+ +D + R G V Q+ FP ++ E + + ++ L +A+L V++ +++
Sbjct: 88 IYDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGLARSKAELDEIVETSLRK 146
Query: 163 LGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQI--- 219
GL R+ + G+SGG+++R+ I + P+V+++DEP S LD + ++
Sbjct: 147 AGLWEEVKDRLHEPGT-GLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEEL 205
Query: 220 IDMLK 224
ID L+
Sbjct: 206 IDELR 210
|
Length = 267 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 3e-09
Identities = 55/227 (24%), Positives = 97/227 (42%), Gaps = 22/227 (9%)
Query: 64 VSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI--DKAQFRKVSGYV 121
+S + + EIL + G GAG++ L E L G + G +NG I R G V
Sbjct: 282 ISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLV 341
Query: 122 -----TQRDTLF---PLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELG--LEHVAMA 171
Q L+ PL L + + + A+ A ++ + L H
Sbjct: 342 YLPEDRQSSGLYLDAPLAWNVCALTHN-RRGFWIKPARENAVLERYRRALNIKFNHA--- 397
Query: 172 RVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRG 231
+ R +SGG +++V I + P++LI+DEPT G+D ++ I +++ +A
Sbjct: 398 ---EQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQ-- 452
Query: 232 RTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSVSLRMMGL 278
+L I I +M + +L++ G + T ++V +M L
Sbjct: 453 NVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAINVD-TIMRL 498
|
Length = 510 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 59.4 bits (145), Expect = 3e-09
Identities = 51/187 (27%), Positives = 89/187 (47%), Gaps = 30/187 (16%)
Query: 69 KPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSP---IDK-------AQFRKVS 118
K ++ I+GP+G GK++ ++IL+G+L P G S + + F+K+
Sbjct: 97 KEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLY 156
Query: 119 G------YVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMAR 172
+ Q L P + F K+R L + R ++ +V+ LGLE++
Sbjct: 157 NGEIKVVHKPQYVDLIPKV-------FKGKVRELLKKVDERGKLDEVVERLGLENIL--- 206
Query: 173 VGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGR 232
D + +SGGE +RV+I ++ D DEPTS LD L + +++ +AE G+
Sbjct: 207 --DRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE--GK 262
Query: 233 TVILSIH 239
V++ H
Sbjct: 263 YVLVVEH 269
|
Length = 590 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.1 bits (140), Expect = 3e-09
Identities = 46/208 (22%), Positives = 96/208 (46%), Gaps = 17/208 (8%)
Query: 72 EILAIVGPSGAGKSSLLEIL------------AGKLTPQSGSTFVNGSPIDKAQFRKVSG 119
++ A++GPSG GKS+ L G++ + + +D + R
Sbjct: 43 QVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRIS 102
Query: 120 YVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVR 179
V Q+ FP ++ E + + ++R ++ L RV++ ++ L R+GD
Sbjct: 103 MVFQKPNPFPK-SIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGD-LAF 160
Query: 180 GISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIH 239
+SGG+++R+ I + DP++L+ DEPTS LD + I +++ ++ + + IL +
Sbjct: 161 NLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELI---SDLKNKVTILIVT 217
Query: 240 QPGFRIVKMFNSILMLANGSVLHHGTVD 267
+ ++ + + G ++ G D
Sbjct: 218 HNMQQAARVSDYTAYMYMGELIEFGATD 245
|
Length = 265 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 59.4 bits (145), Expect = 4e-09
Identities = 59/195 (30%), Positives = 84/195 (43%), Gaps = 53/195 (27%)
Query: 58 RRVLDGVSCK----AKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQ 113
+++L +S AK + ++G +GAGKS+LL I+AG G A
Sbjct: 20 KQILKDISLSFFPGAK----IGVLGLNGAGKSTLLRIMAGVDKEFEGEARP-------AP 68
Query: 114 FRKVSGYVTQRDTLFPLLTVEETLM------FSAKLRLR-------LPQAQLRARVKSLV 160
KV GY+ Q L P TV E + +A R P A A L
Sbjct: 69 GIKV-GYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDA----LA 123
Query: 161 KELG-------------LEH---VAMA--RV--GDDRVRGISGGERRRVSIGFDVIHDPK 200
E G L+ +AM R D +V +SGGERRRV++ ++ P
Sbjct: 124 AEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTKLSGGERRRVALCRLLLEKPD 183
Query: 201 VLILDEPTSGLDSTS 215
+L+LDEPT+ LD+ S
Sbjct: 184 MLLLDEPTNHLDAES 198
|
Length = 556 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.4 bits (138), Expect = 4e-09
Identities = 47/193 (24%), Positives = 95/193 (49%), Gaps = 18/193 (9%)
Query: 59 RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEIL------------AGKLTPQSGSTFVNG 106
+ L+ ++ K I A++GPSG GKS+ L L G + + + + N
Sbjct: 21 KALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNN 80
Query: 107 SPIDKAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLE 166
D + R+ G V Q F L+++ + + + K+ + +L V+ +K+ L
Sbjct: 81 --FDILELRRKIGMVFQTPNPF-LMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALW 137
Query: 167 HVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVM 226
+ ++ + + +SGG+++R+ I + +P V+++DEPTS LD S +I +++ +
Sbjct: 138 NEVKDKLNTNAL-SLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINL 196
Query: 227 AETRGRTVILSIH 239
E+ T+I+ H
Sbjct: 197 KES--YTIIIVTH 207
|
Length = 254 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 5e-09
Identities = 58/214 (27%), Positives = 102/214 (47%), Gaps = 32/214 (14%)
Query: 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSG 119
VL +S K + ++LA+ G +G+GKSSLL ++ G+L P G +G ++S
Sbjct: 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG---------RIS- 490
Query: 120 YVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEH-VAMARVGDDRV 178
+ Q + P T+++ ++F R S++K LE +A+ D V
Sbjct: 491 FSPQTSWIMP-GTIKDNIIFGLSYD--------EYRYTSVIKACQLEEDIALFPEKDKTV 541
Query: 179 RG-----ISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIID--MLKVMAETRG 231
G +SGG+R R+S+ V D + +LD P + LD + +I + + K+M+ +
Sbjct: 542 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMS-NKT 600
Query: 232 RTVILSIHQPGFRIVKMFNSILMLANGSVLHHGT 265
R ++ S +K + IL+L G +GT
Sbjct: 601 RILVTS----KLEHLKKADKILLLHEGVCYFYGT 630
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 5e-09
Identities = 53/202 (26%), Positives = 92/202 (45%), Gaps = 32/202 (15%)
Query: 58 RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAG--KLTPQSGSTFVNGSPI------ 109
+L G++ EI AI+GP+G+GKS+L +++AG G G I
Sbjct: 20 NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPE 79
Query: 110 DKAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLR---LPQA---QLRARVKSLVKEL 163
++A + Q P ++ + L + + + LP+ + + +K +
Sbjct: 80 ERAHLGIFLAF--QYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLV 137
Query: 164 GLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDML 223
G++ ++R ++ G SGGE++R I + D ++ ILDE SGLD ID L
Sbjct: 138 GMDPSFLSRNVNE---GFSGGEKKRNEILQMALLDSELAILDETDSGLD-------IDAL 187
Query: 224 KVMAE------TRGRTVILSIH 239
K++AE T ++IL H
Sbjct: 188 KIIAEGINKLMTSENSIILITH 209
|
Length = 252 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 56.6 bits (136), Expect = 6e-09
Identities = 48/184 (26%), Positives = 81/184 (44%), Gaps = 25/184 (13%)
Query: 72 EILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQF-------RKVSGYVTQR 124
++ IVG G GKSSLL + G++ G + + F R Y Q+
Sbjct: 28 QLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQK 87
Query: 125 DTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLE-HVAMARVGDDRV---RG 180
L TVEE + F + + R K++ L+ + + GD RG
Sbjct: 88 PWLLNA-TVEENITFGSPFN--------KQRYKAVTDACSLQPDIDLLPFGDQTEIGERG 138
Query: 181 I--SGGERRRVSIGFDVIHDPKVLILDEPTSGLDS--TSALQIIDMLKVMAETRGRTVIL 236
I SGG+R+R+ + + + ++ LD+P S LD + L +LK + + + RT++L
Sbjct: 139 INLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDK-RTLVL 197
Query: 237 SIHQ 240
H+
Sbjct: 198 VTHK 201
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.0 bits (137), Expect = 7e-09
Identities = 60/235 (25%), Positives = 109/235 (46%), Gaps = 15/235 (6%)
Query: 61 LDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQ---FRKV 117
L+GVS E ++I+G +G+GKS+ ++ G G ++G + R+
Sbjct: 23 LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRK 82
Query: 118 SGYVTQR-DTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDD 176
G V Q D F TVE+ + F + + +P+ ++ RV L V M
Sbjct: 83 IGMVFQNPDNQFVGATVEDDVAFGMENQ-GIPREEMIKRVDE-----ALLAVNMLDFKTR 136
Query: 177 RVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVIL 236
+SGG+++RV++ + P+++ILDE TS LD T +I+ ++ + E TV+
Sbjct: 137 EPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLS 196
Query: 237 SIHQPGFRIVKMFNSILMLANGSVLHHGT-VDLLSVSLRM--MGLQLPMHVNVVE 288
H + IL++ G ++ +L + S M +GL +P N+++
Sbjct: 197 ITHD--LDEAASSDRILVMKAGEIIKEAAPSELFATSEDMVEIGLDVPFSSNLMK 249
|
Length = 277 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 7e-09
Identities = 46/164 (28%), Positives = 84/164 (51%), Gaps = 16/164 (9%)
Query: 61 LDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI--DKAQFRKVS 118
++ VS + EIL + G GAG++ L+++L G L SG ++G + Q +
Sbjct: 268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLAN 327
Query: 119 G--YVTQ---RDTLFPLLTVEETLMFSA-----KLRLRLPQAQLRARVKSLVKELGLEHV 168
G Y+++ RD L ++V+E + +A + L A + V ++ ++
Sbjct: 328 GIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTP 387
Query: 169 AMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLD 212
+M + + +SGG +++V+I ++ PKVLILDEPT G+D
Sbjct: 388 SM----EQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVD 427
|
Length = 501 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 8e-09
Identities = 54/186 (29%), Positives = 89/186 (47%), Gaps = 18/186 (9%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPID----K 111
GV+ L G + P ++A+VG +GAGKS+++++L G T +GS G + K
Sbjct: 16 GVK-ALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPK 74
Query: 112 AQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQ---AQLRARVKSLVKELGLEHV 168
+ G + Q L P LT+ E + + R + ++ A L+ L L
Sbjct: 75 SSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFS 134
Query: 169 AMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDST---SALQIIDMLKV 225
+ VG+ +S GE++ V I + + KV+I+DEPT L T S ++I LK
Sbjct: 135 SDKLVGE-----LSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELK- 188
Query: 226 MAETRG 231
++ RG
Sbjct: 189 -SQGRG 193
|
Length = 501 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 1e-08
Identities = 46/188 (24%), Positives = 91/188 (48%), Gaps = 11/188 (5%)
Query: 58 RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQ-SGSTFVNGSPID-KAQFR 115
R+ +D VS + EIL + G GAG++ L++ L G + G+ F+NG P+D + +
Sbjct: 273 RKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQ 332
Query: 116 KVSGYVT------QRDTLFPLLTVEETLMFSAKLRL-RLPQAQLRARVKSLVKELGLEHV 168
+ + +R + P+L V + + S + A ++ + + V
Sbjct: 333 AIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKV 392
Query: 169 AMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAE 228
A + +SGG +++ + ++ +P+VLILDEPT G+D + +I ++ +A+
Sbjct: 393 KTAS-PFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQ 451
Query: 229 TRGRTVIL 236
G +I+
Sbjct: 452 -EGVAIIV 458
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 58.4 bits (141), Expect = 1e-08
Identities = 50/207 (24%), Positives = 94/207 (45%), Gaps = 18/207 (8%)
Query: 61 LDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGY 120
L+G++ ++A+VG G GKSSLL L ++ G + GS Y
Sbjct: 654 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGS----------VAY 703
Query: 121 VTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELG-LEHVAMARVGDDRVR 179
V Q+ ++ E ++F L + Q L A +L+ +L L +G+ V
Sbjct: 704 VPQQ-AWIQNDSLRENILFGKALNEKYYQQVLEA--CALLPDLEILPSGDRTEIGEKGV- 759
Query: 180 GISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIID-MLKVMAETRGRTVILSI 238
+SGG+++RVS+ V + + + D+P S +D+ I + ++ + +T IL
Sbjct: 760 NLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVT 819
Query: 239 HQPGFRIVKMFNSILMLANGSVLHHGT 265
H G + + I++++ G + G+
Sbjct: 820 H--GISYLPQVDVIIVMSGGKISEMGS 844
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 2e-08
Identities = 41/139 (29%), Positives = 69/139 (49%), Gaps = 17/139 (12%)
Query: 74 LAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTV 133
+A+VGP+G GKS++L++++G+L P SG+ F S KV V + + L
Sbjct: 538 IAMVGPNGIGKSTILKLISGELQPSSGTVF--RSA-------KVRMAVFSQHHVDGLDLS 588
Query: 134 EETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGF 193
L++ + +P+ +LRA + S L M +SGG++ RV+
Sbjct: 589 SNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYT--------LSGGQKSRVAFAK 640
Query: 194 DVIHDPKVLILDEPTSGLD 212
P +L+LDEP++ LD
Sbjct: 641 ITFKKPHILLLDEPSNHLD 659
|
Length = 718 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 2e-08
Identities = 56/226 (24%), Positives = 97/226 (42%), Gaps = 49/226 (21%)
Query: 53 DSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEIL--AGKLTPQ---SGSTFVNGS 107
+ V+ V C ++ A++GPSG GKS++L L L G +G+
Sbjct: 25 TFEAVKNVF----CDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGT 80
Query: 108 -----PIDKAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKL-----------RLRLPQAQ 151
+D + R+ G V Q+ FP ++ E + F A++ L +A
Sbjct: 81 DLYDPRVDPVEVRRRIGMVFQQPNPFPK-SIYENIAFGARINGYTGDMDELVERSLRKAA 139
Query: 152 LRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGL 211
+ K + E G +SGG+++R+ I + +P+V+++DEP S L
Sbjct: 140 VWDECKDKLNESGYS--------------LSGGQQQRLCIARTIAIEPEVILMDEPCSAL 185
Query: 212 DSTSALQIIDMLKVMAETRGR-TVILSIH--QPGFRIVKM---FNS 251
D S L+I + M E + T+++ H Q R+ M FN+
Sbjct: 186 DPISTLKIEE---TMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNA 228
|
Length = 269 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 3e-08
Identities = 60/190 (31%), Positives = 83/190 (43%), Gaps = 28/190 (14%)
Query: 72 EILAIVGPSGAGKSSLLEILAGKLTPQ---SGSTFVNGSPI--------DKAQFRKVSGY 120
E L IVG SG+GKS L G L GS NG I +K + ++S
Sbjct: 43 ETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMI 102
Query: 121 VTQRDT-LFPLLTVEETLMFSAKLRLRLPQAQ-LRARVKSLVKELGLEHVAM--ARVGDD 176
T L P + V E LM L + +A+ V+ L + V M AR
Sbjct: 103 FQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRML------DAVKMPEAR---K 153
Query: 177 RVR----GISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGR 232
R++ SGG R+RV I ++ PK+LI DEPT+ LD T QI+ +L +
Sbjct: 154 RMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNT 213
Query: 233 TVILSIHQPG 242
+I+ H G
Sbjct: 214 AIIMITHDLG 223
|
Length = 330 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.9 bits (132), Expect = 3e-08
Identities = 46/187 (24%), Positives = 92/187 (49%), Gaps = 32/187 (17%)
Query: 72 EILAIVGPSGAGKSSLLEIL------------AGKLTPQSGSTFVNGSPIDKAQFRKVSG 119
E+ AI+GPSG GKS+ ++ L GK+ + + F +++ R G
Sbjct: 51 EVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEE--LRTNVG 108
Query: 120 YVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGD---D 176
V Q+ FP ++ + + + K+ + K + E+ + + A + D D
Sbjct: 109 MVFQKPNPFPK-SIYDNVTYGPKIH--------GIKDKKTLDEIVEKSLRGAAIWDELKD 159
Query: 177 RVR----GISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGR 232
R+ G+SGG+++R+ I + +P V+++DEPTS LD S L++ ++++ + +
Sbjct: 160 RLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKD--Y 217
Query: 233 TVILSIH 239
++I+ H
Sbjct: 218 SIIIVTH 224
|
Length = 271 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 5e-08
Identities = 43/152 (28%), Positives = 67/152 (44%), Gaps = 40/152 (26%)
Query: 74 LAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTV 133
+A++GP+G GK++LL+++ G+L SG G+ ++ A F + R L P TV
Sbjct: 348 IALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKLEVAYFDQ------HRAELDPEKTV 400
Query: 134 EETL-------MFSAKLRLRLPQAQ------LRARVKSLVKELGLEHVAMARVGDDRVRG 180
+ L M + + R L Q RA V+
Sbjct: 401 MDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTP--------------------VKA 440
Query: 181 ISGGERRRVSIGFDVIHDPKVLILDEPTSGLD 212
+SGGER R+ + + +LILDEPT+ LD
Sbjct: 441 LSGGERNRLLLARLFLKPSNLLILDEPTNDLD 472
|
Length = 635 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 5e-08
Identities = 49/159 (30%), Positives = 72/159 (45%), Gaps = 36/159 (22%)
Query: 72 EILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLL 131
E LAI+G +G GK++LL L G+L P SG+ V S + A GY Q
Sbjct: 346 ERLAIIGENGVGKTTLLRTLVGELEPDSGT--VKWS--ENANI----GYYAQ-------- 389
Query: 132 TVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVG------DD---RVRGIS 182
+ F L L +Q R +E E +G DD V+ +S
Sbjct: 390 --DHAYDFENDLTLFDWMSQWR-------QEGDDEQAVRGTLGRLLFSQDDIKKSVKVLS 440
Query: 183 GGERRRVSIGFDVIHDPKVLILDEPTSGLD--STSALQI 219
GGE+ R+ G ++ P VL++DEPT+ +D S +L +
Sbjct: 441 GGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNM 479
|
Length = 530 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 55.1 bits (134), Expect = 6e-08
Identities = 55/166 (33%), Positives = 81/166 (48%), Gaps = 37/166 (22%)
Query: 59 RVL-DGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKV 117
R+L D +S P I+ I+GP+GAGKS+L +++ G+ P SG T G + K+
Sbjct: 337 RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSG-TIKIGETV------KL 389
Query: 118 SGYVTQ-RDTLFPLLTVEETLMFSAKL-RLRLPQAQLRARVKSLVKELGLEHVAMARV-- 173
+ YV Q RD L P TV E S L +++ ++ +R A V
Sbjct: 390 A-YVDQSRDALDPNKTVWE--EISGGLDIIKVGNREIPSR---------------AYVGR 431
Query: 174 ----GDD---RVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLD 212
G D +V +SGGER R+ + + VL+LDEPT+ LD
Sbjct: 432 FNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLD 477
|
Length = 556 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 8e-08
Identities = 47/197 (23%), Positives = 86/197 (43%), Gaps = 38/197 (19%)
Query: 64 VSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNG------SPIDKAQFRKV 117
+S EIL G G+G++ L+ L G G +NG SP+D +K
Sbjct: 282 ISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDA--VKKG 339
Query: 118 SGYVTQ--RDT-LFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAM-ARV 173
Y+T+ RD FP ++ + + S L+ K +GL H R
Sbjct: 340 MAYITESRRDNGFFPNFSIAQNMAISRSLKD--------GGYKGA---MGLFHEVDEQRT 388
Query: 174 GDDR--------------VRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQI 219
+++ + +SGG +++V I + P+V+I DEPT G+D + +I
Sbjct: 389 AENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEI 448
Query: 220 IDMLKVMAETRGRTVIL 236
+++ +A+ G+ +++
Sbjct: 449 YKVMRQLAD-DGKVILM 464
|
Length = 510 |
| >gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 52.6 bits (126), Expect = 9e-08
Identities = 46/187 (24%), Positives = 80/187 (42%), Gaps = 19/187 (10%)
Query: 58 RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKV 117
++ L +S P I I G +G GKSSLL ++AG + P SG+ + I+ +
Sbjct: 13 QKNLFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA-KPY 71
Query: 118 SGYVTQRDTLFPLLTVEETLMFSAKL---RLRLPQAQLRARVKSLVKELGLEHVAMARVG 174
Y+ L +TV E L F +++ L A ++ L+
Sbjct: 72 CTYIGHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLL-------------- 117
Query: 175 DDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTV 234
D++ +S G ++ V+I + + +LDE + L + +++ L VM G V
Sbjct: 118 DEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENR-DLLNNLIVMKANSGGIV 176
Query: 235 ILSIHQP 241
+LS H
Sbjct: 177 LLSSHLE 183
|
Length = 195 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 54.6 bits (131), Expect = 1e-07
Identities = 59/221 (26%), Positives = 104/221 (47%), Gaps = 15/221 (6%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---A 112
G+ VL G+S P E + +VG +GAGKSS+L L + + G ++ + K
Sbjct: 1247 GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLT 1306
Query: 113 QFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKE--LGLEHVAM 170
R+V + Q LF FS L +A RA +K ++ GL+
Sbjct: 1307 DLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLD---- 1362
Query: 171 ARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETR 230
A V + S G+R+ +S+ ++ K+L+LDE T+ +D + I ++ E +
Sbjct: 1363 AEVSEGG-ENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIR--EEFK 1419
Query: 231 GRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGT-VDLLS 270
T+++ H+ + + IL+L++G VL + + +LLS
Sbjct: 1420 SCTMLVIAHR--LNTIIDCDKILVLSSGQVLEYDSPQELLS 1458
|
Length = 1495 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 2e-07
Identities = 43/187 (22%), Positives = 84/187 (44%), Gaps = 21/187 (11%)
Query: 64 VSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQ 123
+S + EI+ + G GAG+S L+++L G +G +++G PID R +
Sbjct: 272 ISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPID---IRSPRDAIRA 328
Query: 124 ----------RDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARV 173
+ + P+ +V + + SA+ R L L E + +
Sbjct: 329 GIMLCPEDRKAEGIIPVHSVADNINISAR-RHHLRAGCLINNRWE--AENADRFIRSLNI 385
Query: 174 ----GDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAET 229
+ + +SGG +++ +G + D KV++LDEPT G+D + +I +++ +A
Sbjct: 386 KTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAA- 444
Query: 230 RGRTVIL 236
+G V+
Sbjct: 445 QGVAVLF 451
|
Length = 501 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.7 bits (126), Expect = 2e-07
Identities = 53/210 (25%), Positives = 93/210 (44%), Gaps = 32/210 (15%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEIL--AGKLTPQSGST--------FVN 105
G +R ++ +S + + A++GPSG GKS+ L + L P + S +
Sbjct: 32 GEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNIL 91
Query: 106 GSPIDKAQFRKVSGYVTQRDTLFP---LLTVEETLMFSAKLRLRLPQAQLRARVKSLVKE 162
S I+ R+ G V Q+ FP + L ++ + R KS++ E
Sbjct: 92 DSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERR------------KSVLDE 139
Query: 163 LGLEHVAMARVGD---DRVR----GISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTS 215
+ E + A + D DR+ +SGG+++R+ I + P VL+LDEP S LD S
Sbjct: 140 IVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPIS 199
Query: 216 ALQIIDMLKVMAETRGRTVILSIHQPGFRI 245
+I +++ + E ++ Q R+
Sbjct: 200 NAKIEELITELKEEYSIIIVTHNMQQALRV 229
|
Length = 268 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 3e-07
Identities = 53/226 (23%), Positives = 102/226 (45%), Gaps = 22/226 (9%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEIL--AGKLTPQ---SGSTFVNGSPI- 109
G +++L ++ E+ A +GPSG GKS+ L P G ++G +
Sbjct: 16 GSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVY 75
Query: 110 ----DKAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLR-LRLPQAQLRARVKSLVKELG 164
+ R G V Q+ FP ++ + + + KL L + +L V+ + +G
Sbjct: 76 SVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVG 134
Query: 165 LEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLD--STSALQ-IID 221
L R+ D +SGG+++R+ I + P +L++DEP S LD +T+ ++ +I
Sbjct: 135 LWEELGDRLKDSAFE-LSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQ 193
Query: 222 MLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVD 267
LK + T+I+ H + K+ + + +G ++ + T
Sbjct: 194 ELK-----KNFTIIVVTHSMK-QAKKVSDRVAFFQSGRIVEYNTTQ 233
|
Length = 251 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 53.4 bits (128), Expect = 3e-07
Identities = 40/194 (20%), Positives = 85/194 (43%), Gaps = 17/194 (8%)
Query: 72 EILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI---DKAQFRKVSGYVTQRDTLF 128
+I+ IVG +G GKS+L ++ G PQ G ++G+ + + +R + + LF
Sbjct: 369 DIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLF 428
Query: 129 PLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEH-VAMARVGDDRVRGISGGERR 187
++ + L AQ ++ L + V + G +S G+++
Sbjct: 429 -----DDLIGPDEGEHASLDNAQ------QYLQRLEIADKVKIEDGGFSTTTALSTGQQK 477
Query: 188 RVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVK 247
R+++ + D +L+ DE + D + L + +G+T+I+ H + +
Sbjct: 478 RLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDD--QYFE 535
Query: 248 MFNSILMLANGSVL 261
+ + I+ LA G ++
Sbjct: 536 LADQIIKLAAGCIV 549
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|213237 cd03270, ABC_UvrA_I, ATP-binding cassette domain I of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 3e-07
Identities = 52/189 (27%), Positives = 85/189 (44%), Gaps = 30/189 (15%)
Query: 72 EILAIVGPSGAGKSSLL--EILAG--KLTPQSGSTFVNG--SPIDKAQFRKVSGY----- 120
+++ I G SG+GKSSL I A + +S S + +DK + G
Sbjct: 22 KLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIA 81
Query: 121 VTQRDTLF-PLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVR 179
+ Q+ T P TV LRL + +R R+ LV ++GL ++ ++R
Sbjct: 82 IDQKTTSRNPRSTVGTVTEIYDYLRLLFARVGIRERLGFLV-DVGLGYLTLSR----SAP 136
Query: 180 GISGGERRRV----SIG---FDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGR 232
+SGGE +R+ IG V++ +LDEP+ GL ++I+ LK + G
Sbjct: 137 TLSGGEAQRIRLATQIGSGLTGVLY-----VLDEPSIGLHPRDNDRLIETLKRL-RDLGN 190
Query: 233 TVILSIHQP 241
TV++ H
Sbjct: 191 TVLVVEHDE 199
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 226 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 3e-07
Identities = 50/189 (26%), Positives = 85/189 (44%), Gaps = 24/189 (12%)
Query: 76 IVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTVEE 135
++G +G+GKS+LL+ L + G + S YV Q+ +
Sbjct: 691 VLGATGSGKSTLLQSLLSQFEISEGRVWAERS----------IAYVPQQAWIMNATVRGN 740
Query: 136 TLMFSAKLRLRLPQA----QLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSI 191
L F + RL A QL A + L GLE +G+ V +SGG++ RVS+
Sbjct: 741 ILFFDEEDAARLADAVRVSQLEADLAQLGG--GLE----TEIGEKGV-NLSGGQKARVSL 793
Query: 192 GFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNS 251
V + V +LD+P S LD+ ++++ + G+T +L+ HQ +V +
Sbjct: 794 ARAVYANRDVYLLDDPLSALDAHVGERVVEEC-FLGALAGKTRVLATHQ--VHVVPRADY 850
Query: 252 ILMLANGSV 260
++ L +G V
Sbjct: 851 VVALGDGRV 859
|
Length = 1560 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 3e-07
Identities = 63/234 (26%), Positives = 105/234 (44%), Gaps = 50/234 (21%)
Query: 75 AIVGPSGAGKSSLLEILAGKLTPQSG---STFVNGSPIDKAQFRKVSGYVTQR---DTLF 128
A VG +G+GKS+L LAG+L SG S F + + + Q +K+ QR D L
Sbjct: 33 AFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLS 92
Query: 129 PL-----LTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISG 183
P T E + K AR + L ++ G+ + D R + +S
Sbjct: 93 PGEDDTGRTTAEIIQDEVKDP---------ARCEQLAQQFGITALL-----DRRFKYLST 138
Query: 184 GERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGF 243
GE R+ + ++ +P +LILDEP GLD S Q+ ++L + G T++L
Sbjct: 139 GETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLH-QSGITLVL------- 190
Query: 244 RIVKMFNSIL-------MLANGSVLHHGT-VDLLSVSL--------RMMGLQLP 281
++ F+ I +LA+ ++ G ++L +L ++ G+QLP
Sbjct: 191 -VLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQALVAQLAHSEQLEGVQLP 243
|
Length = 490 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 4e-07
Identities = 44/170 (25%), Positives = 82/170 (48%), Gaps = 22/170 (12%)
Query: 58 RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQS-GSTFVNGSPID-----K 111
+ +D VS + EIL I G GAG++ L++ L G + G F++G P+ +
Sbjct: 275 IKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQ 334
Query: 112 AQFRKVSGYVTQ---RDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHV 168
A + V + RD + P++ V + + +A L + +R+ EL
Sbjct: 335 A-IAQGIAMVPEDRKRDGIVPVMGVGKNITLAA-----LDRFTGGSRIDD-AAELKTILE 387
Query: 169 AMARVG------DDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLD 212
++ R+ + + +SGG +++ + ++ +PK+LILDEPT G+D
Sbjct: 388 SIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGID 437
|
Length = 506 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 49.0 bits (118), Expect = 6e-07
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 4/58 (6%)
Query: 182 SGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIH 239
SGGE+ R+++ ++ +P +L+LDEPT+ LD S + + LK E G TVIL H
Sbjct: 72 SGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALK---EYPG-TVILVSH 125
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 52.7 bits (126), Expect = 6e-07
Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Query: 181 ISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQ 240
+SGG+++R+SI +I +PK+LILDE TS LD+ S + + + R I+ H+
Sbjct: 580 LSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHR 639
Query: 241 PGFRIVKMFNSILMLANGSVLHHGTVDLL 269
++ N+I +L+N VD++
Sbjct: 640 --LSTIRYANTIFVLSNRERGSTVDVDII 666
|
Length = 1466 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (121), Expect = 6e-07
Identities = 47/166 (28%), Positives = 79/166 (47%), Gaps = 22/166 (13%)
Query: 72 EILAIVGPSGAGKSSLLEILAGKLTPQSGSTF----------VNGSPIDKAQFRKVSGYV 121
EI +GPSG GKS++L L G F V G +D R+ G V
Sbjct: 35 EITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMV 94
Query: 122 TQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVR-- 179
Q+ F + ++ + + F LRL + L RVK L+ A+ D+++
Sbjct: 95 FQQPNPFSM-SIFDNVAFG--LRLNRYKGDLGDRVKH-----ALQGAALWDEVKDKLKVS 146
Query: 180 --GISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDML 223
+SGG+++R+ I + +P+VL+LDEP S LD + ++ +++
Sbjct: 147 GLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELM 192
|
Length = 261 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 7e-07
Identities = 56/211 (26%), Positives = 97/211 (45%), Gaps = 39/211 (18%)
Query: 76 IVGPSGAGKSSLLEILA-------GKLT----------PQSGSTFVNGSPID--KAQFRK 116
+VG +GAGKS+L++IL G++ Q V G+ D +
Sbjct: 34 LVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVEGTVYDFVAEGIEE 93
Query: 117 VSGYVTQRDTLFPLLTV---EETLMFSAKLRLRLPQA---QLRARVKSLVKELGLEHVAM 170
+ Y+ + + L+ E+ L AKL+ +L QL R+ ++ +LGL+
Sbjct: 94 QAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD---- 149
Query: 171 ARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDML-KVMAET 229
D + +SGG R+ ++G ++ +P VL+LDEPT+ LD ++ I+ L +
Sbjct: 150 ---PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLD----IETIEWLEGFLKTF 202
Query: 230 RGRTVILSIHQPGFRIVKMFNSILMLANGSV 260
+G + +S H F I M I+ L G +
Sbjct: 203 QGSIIFIS-HDRSF-IRNMATRIVDLDRGKL 231
|
Length = 635 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 7e-07
Identities = 43/188 (22%), Positives = 84/188 (44%), Gaps = 11/188 (5%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFR 115
R VL ++ + KP +++A+VG SGAGK++LL ++ G + + S +
Sbjct: 394 IERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKN 453
Query: 116 KVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGD 175
VS + P E T++ + + A + ++ GL + R
Sbjct: 454 TVSALIPGEYE--PEFG-EVTILEHLRSKTGDLNAAV-----EILNRAGLSDAVLYRR-- 503
Query: 176 DRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVI 235
+ +S G++ R + + P VL++DE + LD +A+++ + +A G T+I
Sbjct: 504 -KFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLI 562
Query: 236 LSIHQPGF 243
+ H+P
Sbjct: 563 VVTHRPEV 570
|
Length = 593 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 8e-07
Identities = 55/222 (24%), Positives = 101/222 (45%), Gaps = 32/222 (14%)
Query: 58 RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQF 114
VL ++ +A+VG +G+GKS+L +L G G ++G P+ +
Sbjct: 354 NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVL 413
Query: 115 RKVSGYVTQ-----RDTLFPLLT----VEETLMFSAKLRLRLPQAQLRARVKSLVKELGL 165
R+ V Q DT +T + E ++ A L QL +SL L
Sbjct: 414 RQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQA-----LETVQLAELARSLPDGL-- 466
Query: 166 EHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTS--ALQIIDML 223
+ + G++ +S G+++ +++ ++ P++LILDE T+ +DS + A+Q
Sbjct: 467 -YTPLGEQGNN----LSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQ----- 516
Query: 224 KVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGT 265
+ +A R T ++ I IV+ ++IL+L G + GT
Sbjct: 517 QALAAVREHTTLVVIAHRLSTIVEA-DTILVLHRGQAVEQGT 557
|
Length = 592 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 48.6 bits (117), Expect = 9e-07
Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 54 SDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQ 113
+ G + +L +S P + + +VG +GAGKS+LL+++AG+L P G GS +
Sbjct: 9 TYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTW-GSTVKIGY 67
Query: 114 FRKVSG 119
F ++SG
Sbjct: 68 FEQLSG 73
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (121), Expect = 9e-07
Identities = 48/197 (24%), Positives = 93/197 (47%), Gaps = 24/197 (12%)
Query: 58 RRVLDGVSCKAKPWEILAIVGPSGAGKSSLL-------EILAGKLTPQSGSTFVNGS--- 107
+ VL ++ K ++ A +GPSG GKS+ L +++ G T G + G+
Sbjct: 95 KHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEG--TSHEGEIYFLGTNTR 152
Query: 108 --PIDKAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGL 165
I + R G V Q+ T F + ++ + + + + + L V+ +K L
Sbjct: 153 SKKISSLELRTRIGMVFQKPTPFEM-SIFDNVAYGPRNNGINDRKILEKIVEKSLKSAAL 211
Query: 166 EHVAMARVGDDRVRG---ISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDM 222
V DD + +SGG+++R+ I + +P+VL++DEPTS LD + +I ++
Sbjct: 212 ----WDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEEL 267
Query: 223 LKVMAETRGRTVILSIH 239
++ + ++I+ H
Sbjct: 268 --ILELKKKYSIIIVTH 282
|
Length = 329 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 1e-06
Identities = 53/179 (29%), Positives = 82/179 (45%), Gaps = 31/179 (17%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGS-TF--------VNG 106
GVR +LD + P + + +VG +G GKS+LL +L +++ GS TF VN
Sbjct: 12 GVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQ 71
Query: 107 -SPIDKAQFRKVSGYVTQRDTLFPLLTVEETLMFS---------AKLRLRLPQAQ---LR 153
+P A + YV D + L E L + A + +L +R
Sbjct: 72 ETP---ALPQPALEYVIDGDREYRQL--EAQLHDANERNDGHAIATIHGKLDAIDAWTIR 126
Query: 154 ARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLD 212
+R SL+ LG + + R V SGG R R+++ +I +L+LDEPT+ LD
Sbjct: 127 SRAASLLHGLGFSNEQLER----PVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLD 181
|
Length = 638 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 2e-06
Identities = 53/188 (28%), Positives = 83/188 (44%), Gaps = 21/188 (11%)
Query: 58 RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFV------NGSPIDK 111
R +L +S + P E IVGP+GAGKS+LL ++ G PQ S + GS
Sbjct: 273 RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGD-HPQGYSNDLTLFGRRRGSGETI 331
Query: 112 AQFRKVSGYVTQRDTL-----FPLLTVEETLMF-SAKLRLRLPQAQLRARVKSLVKELGL 165
+K GYV+ L + V + F S + + Q + + + LG+
Sbjct: 332 WDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQ-QKLAQQWLDILGI 390
Query: 166 EHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTS---ALQIIDM 222
+ R D +S G++R I ++ P +LILDEP GLD + + +D+
Sbjct: 391 D----KRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDV 446
Query: 223 LKVMAETR 230
L ET+
Sbjct: 447 LISEGETQ 454
|
Length = 490 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 2e-06
Identities = 52/183 (28%), Positives = 79/183 (43%), Gaps = 25/183 (13%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPID----K 111
GV+ LD V+ K +P I A++G +GAGKS+LL+ L G SGS G ID K
Sbjct: 10 GVK-ALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSK 68
Query: 112 AQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLP-------QAQLRARVKSLVKELG 164
V Q L +V + + R P Q ++ K++ EL
Sbjct: 69 EALENGISMVHQELNLVLQRSVMDNMWLG-----RYPTKGMFVDQDKMYRDTKAIFDELD 123
Query: 165 LEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSA---LQIID 221
++ A+V +S + + + I ++ K++I+DEPTS L II
Sbjct: 124 IDIDPRAKVAT-----LSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIR 178
Query: 222 MLK 224
LK
Sbjct: 179 KLK 181
|
Length = 491 |
| >gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 2e-06
Identities = 18/59 (30%), Positives = 35/59 (59%)
Query: 181 ISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIH 239
++ GE ++V I + + P++LI DEPT+ ++ T+ QI +L + + T++L H
Sbjct: 159 LTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISH 217
|
Length = 330 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 3e-06
Identities = 58/221 (26%), Positives = 109/221 (49%), Gaps = 25/221 (11%)
Query: 61 LDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKV 117
L ++ K + +A+VG SG+GKS++ +L G ++G + A R
Sbjct: 359 LRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQ 418
Query: 118 SGYVTQRDTLFPLLTVEETLMFSAK---LRLRLPQAQLRARVKSLVKEL--GLEHVAMAR 172
V+Q LF T+ + ++ R ++ +A A + ++ GL+ V
Sbjct: 419 VALVSQNVHLFND-TIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTV---- 473
Query: 173 VGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQI---IDMLKVMAET 229
+G++ V +SGG+R+R++I ++ D +LILDE TS LD+ S I +D L+
Sbjct: 474 IGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ----- 527
Query: 230 RGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGT-VDLL 269
+ RT ++ H+ ++ + IL++ +G ++ GT +LL
Sbjct: 528 KNRTSLVIAHR--LSTIEKADEILVVEDGEIVERGTHAELL 566
|
Length = 582 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 4e-06
Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 10/122 (8%)
Query: 72 EILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNG-SPIDKAQFRKVSGYVTQRDTLFPL 130
E++ IVGP+G GK++ ++ILAG+L P + +G +P+ K Q+ +SG QR +
Sbjct: 26 EVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAA 85
Query: 131 LTVEETLMF----SAKL----RLRLPQAQLRARVKSLVKELGLEH-VAMARVGDDRVRGI 181
L T SA L RL +A R + L +EH +A+ DR+
Sbjct: 86 LLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVF 145
Query: 182 SG 183
G
Sbjct: 146 EG 147
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 5e-06
Identities = 35/182 (19%), Positives = 56/182 (30%), Gaps = 58/182 (31%)
Query: 70 PWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTF-VNGSPIDKAQFRKVSGYVTQRDTLF 128
P E++ IVGP G+GK++L LA +L P G ++G
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGE--------------------- 39
Query: 129 PLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRR 188
+ + K+ R+ R
Sbjct: 40 ---------------DILEEVLDQLLLIIVGGKKASGSGELRLRLALALARK-------- 76
Query: 189 VSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDM-----LKVMAETRGRTVILSIHQPGF 243
P VLILDE TS LD+ ++ + L ++ + TVIL+ +
Sbjct: 77 --------LKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKD 128
Query: 244 RI 245
Sbjct: 129 LG 130
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 1e-05
Identities = 34/138 (24%), Positives = 63/138 (45%), Gaps = 16/138 (11%)
Query: 72 EILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQ---FRKVSGYVTQRDTLF 128
E++ ++G +G+GKS+L +L G PQSG ++G P+ Q +RK+ V LF
Sbjct: 350 ELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLF 409
Query: 129 PLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRR 188
L L ++ ++ L L H G +S G+++R
Sbjct: 410 DQL-------------LGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKR 456
Query: 189 VSIGFDVIHDPKVLILDE 206
+++ ++ + +L+LDE
Sbjct: 457 LALLLALLEERDILVLDE 474
|
Length = 546 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 2e-05
Identities = 34/99 (34%), Positives = 57/99 (57%), Gaps = 8/99 (8%)
Query: 179 RGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSI 238
+ +SGG+++R++I ++ +PK+L+LDE TS LDS S I + + + +T+I
Sbjct: 1357 KSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIA 1416
Query: 239 HQPGFRIVKMFNSILMLAN----GS-VLHHGTVD-LLSV 271
H+ +K + I++ N GS V HGT + LLSV
Sbjct: 1417 HR--IASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSV 1453
|
Length = 1466 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 2e-05
Identities = 64/288 (22%), Positives = 122/288 (42%), Gaps = 39/288 (13%)
Query: 54 SDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKA- 112
++G VL+ +S P + + ++G +G+GKS+LL +L G ++G +
Sbjct: 13 TEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFL-RLLNTEGDIQIDGVSWNSVP 71
Query: 113 --QFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRL-PQAQLR-ARVKSLVKELGLEHV 168
++RK G + Q+ +FS R L P + + + +E+GL+ V
Sbjct: 72 LQKWRKAFGVIPQK-----------VFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSV 120
Query: 169 ------AMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDM 222
+ V D +S G ++ + + V+ K+L+LDEP++ LD + I
Sbjct: 121 IEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKT 180
Query: 223 LKVMAETRGRTVILSIHQPGFRIVKMFN--SILMLANGSVLHHGTVDLLSVSLRMMGLQL 280
LK TVILS H RI M L++ V + ++ L ++ + Q
Sbjct: 181 LK--QAFADCTVILSEH----RIEAMLECQRFLVIEENKVRQYDSIQKL-LNEKSHFKQA 233
Query: 281 PMHVNVVEFAIESIDLIQEQRKIQQENQPRMMLPATQQQKKAEEGESR 328
+ + L + + + +PR + A Q++ + E ++R
Sbjct: 234 ISPS-------DRLKLFPRRNSSKSKRKPRPQIQALQEETEEEVQDTR 274
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 46.1 bits (109), Expect = 6e-05
Identities = 65/289 (22%), Positives = 125/289 (43%), Gaps = 41/289 (14%)
Query: 54 SDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNG---SPID 110
++ R VL +S + + + ++G +G+GKS+LL L +L G ++G + +
Sbjct: 1228 TEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALL-RLLSTEGEIQIDGVSWNSVT 1286
Query: 111 KAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRL-PQAQLR-ARVKSLVKELGLEHV 168
+RK G + Q+ +FS R L P Q + + +E+GL+ V
Sbjct: 1287 LQTWRKAFGVIPQK-----------VFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSV 1335
Query: 169 ------AMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDM 222
+ V D +S G ++ + + ++ K+L+LDEP++ LD + LQII
Sbjct: 1336 IEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVT-LQIIR- 1393
Query: 223 LKVMAETRGR-TVILSIHQPGFRIVKMF--NSILMLANGSVLHHGTVDLLSVSLRMMGLQ 279
K + ++ TVILS H R+ + L++ SV + ++ L L
Sbjct: 1394 -KTLKQSFSNCTVILSEH----RVEALLECQQFLVIEGSSVKQYDSIQKL--------LN 1440
Query: 280 LPMHVNVVEFAIESIDLIQEQRKIQQENQPRMMLPATQQQKKAEEGESR 328
A + + L R+ + +P+ + A +++ + E +R
Sbjct: 1441 ETSLFKQAMSAADRLKLFPLHRRNSSKRKPQPKITALREEAEEEVQNTR 1489
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 2e-04
Identities = 47/193 (24%), Positives = 86/193 (44%), Gaps = 27/193 (13%)
Query: 61 LDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGY 120
LD +S KA +++ +VG +G+GKS+L I+ G L+P G NG A +SG
Sbjct: 40 LDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQ 99
Query: 121 VTQRDTL-FPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGD---D 176
+T + + F +L + F K +K + + + + +G+
Sbjct: 100 LTGIENIEFKML----CMGFKRK----------------EIKAMTPKIIEFSELGEFIYQ 139
Query: 177 RVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVIL 236
V+ S G R ++ ++ +P +L++DE S D T A + +D + E + +T+
Sbjct: 140 PVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKE-QNKTIFF 198
Query: 237 SIHQPGFRIVKMF 249
H V+ F
Sbjct: 199 VSHN--LGQVRQF 209
|
Length = 264 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 2e-04
Identities = 41/144 (28%), Positives = 62/144 (43%), Gaps = 21/144 (14%)
Query: 74 LAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTV 133
L I GP+G GKSSL IL L P G P F YV QR L T+
Sbjct: 481 LLICGPNGCGKSSLFRILGE-LWPVYGGRLT--KPAKGKLF-----YVPQR-PYMTLGTL 531
Query: 134 EETLMFSAKLRLRLPQAQLR----ARVKSLVKELGLEHVAMARVGDDRVRG----ISGGE 185
+ +++ + R ++ ++ + L H+ G V+ +SGGE
Sbjct: 532 RDQIIYP----DSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGE 587
Query: 186 RRRVSIGFDVIHDPKVLILDEPTS 209
++R+++ H P+ ILDE TS
Sbjct: 588 KQRIAMARLFYHKPQFAILDECTS 611
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|206747 cd01854, YjeQ_EngC, Ribosomal interacting GTPase YjeQ/EngC, a circularly permuted subfamily of the Ras GTPases | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 2e-04
Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 20/79 (25%)
Query: 29 IFTKNQLNDDHHAQEELSKLEE---------AADSDG---VRRVLDGVSCKAKPWEILAI 76
+ K L DD +E L E+ A +G +R +L G + +
Sbjct: 39 VLNKADLVDDEELEELLEIYEKLGYPVLAVSAKTGEGLDELRELLKG--------KTSVL 90
Query: 77 VGPSGAGKSSLLEILAGKL 95
VG SG GKS+LL L +L
Sbjct: 91 VGQSGVGKSTLLNALLPEL 109
|
YjeQ (YloQ in Bacillus subtilis) is a ribosomal small subunit-dependent GTPase; hence also known as RsgA. YjeQ is a late-stage ribosomal biogenesis factor involved in the 30S subunit maturation, and it represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. Length = 211 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 2e-04
Identities = 37/140 (26%), Positives = 67/140 (47%), Gaps = 19/140 (13%)
Query: 72 EILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQ---FRKVSGYVTQRDTLF 128
E+L ++G +G+GKS+L +L G PQSG ++G P+ Q +RK+ V LF
Sbjct: 350 ELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLF 409
Query: 129 PLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGI--SGGER 186
L E + A V+ ++ L + H + D R+ + S G++
Sbjct: 410 DQLLGPEG------------KPANPALVEKWLERLKMAH--KLELEDGRISNLKLSKGQK 455
Query: 187 RRVSIGFDVIHDPKVLILDE 206
+R+++ + + +L+LDE
Sbjct: 456 KRLALLLALAEERDILLLDE 475
|
Length = 547 |
| >gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50 | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 2e-04
Identities = 41/187 (21%), Positives = 67/187 (35%), Gaps = 39/187 (20%)
Query: 73 ILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRK--VSGYVTQRDTLFPL 130
+ IVG +GAGK++++E L LT G D R+ V V
Sbjct: 24 LTLIVGQNGAGKTTIIEALKYALTG-ELPPNSKGGAHDPKLIREGEVRAQV--------- 73
Query: 131 LTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGD-----DRVRG-ISGG 184
KL + +SL LE+V G+ +RG SGG
Sbjct: 74 -----------KLAFENANGKKYTITRSLAI---LENVIFCHQGESNWPLLDMRGRCSGG 119
Query: 185 ERRRVSIGF-----DVIHDP-KVLILDEPTSGLDSTS-ALQIIDMLKVMAETRGRTVILS 237
E+ S+ + +L LDEPT+ LD + + ++++ + +I+
Sbjct: 120 EKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVI 179
Query: 238 IHQPGFR 244
H
Sbjct: 180 THDEELV 186
|
The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. Length = 204 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 3e-04
Identities = 53/217 (24%), Positives = 104/217 (47%), Gaps = 34/217 (15%)
Query: 64 VSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPID-KAQFRKVSGYVT 122
VS EIL I G GA ++ ++E L G +G+ ++G I+ ++
Sbjct: 267 VSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHG-- 324
Query: 123 QRDTLFPLLTVE--ETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDD---- 176
F L+T E T +++ L + L + +++ ++GL + +R+ D
Sbjct: 325 -----FALVTEERRSTGIYA---YLDIGFNSLISNIRNYKNKVGL--LDNSRMKSDTQWV 374
Query: 177 ----RVR---------GISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDML 223
RV+ +SGG +++V IG ++ P++L+LDEPT G+D + +I ++
Sbjct: 375 IDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLI 434
Query: 224 KVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSV 260
+A+ +I+S P ++ + + IL+++NG V
Sbjct: 435 AELAKKDKGIIIISSEMP--ELLGITDRILVMSNGLV 469
|
Length = 491 |
| >gnl|CDD|221721 pfam12698, ABC2_membrane_3, ABC-2 family transporter protein | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.001
Identities = 31/154 (20%), Positives = 51/154 (33%), Gaps = 4/154 (2%)
Query: 419 LFAFILTFLLSCTTEALPIFLQEREILMKETSCGS-YRVSSYAIANGLVYLPFLLILAIL 477
L + +L ++E+E +KE S Y + L L LI ++
Sbjct: 98 LGLLLFLLILIGALIIALSIVEEKESRIKERLLVSGVSPLKYLLGKILGDLLVGLIQLLI 157
Query: 478 FSVPLYWIVGLNPNLMAFFHFLLLIWLILYTANSVVVCFSALVPNFIVGNSVISGVMGSF 537
L + GL LLL L ++ +L N VIS ++
Sbjct: 158 I---LLLLFGLGIPFGNLLLLLLLFLLYGLAYIALGALLGSLFKNSEAAILVISILILLL 214
Query: 538 FLFSGYFISKHGIPDYWIFMHYISLFKYPFEQFL 571
F G +P + ++ I F P + L
Sbjct: 215 SGFFGGLFPLPNMPSFLQWIFSIIPFFAPIDGLL 248
|
This family is related to the ABC-2 membrane transporter family pfam01061. Length = 278 |
| >gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.001
Identities = 54/212 (25%), Positives = 91/212 (42%), Gaps = 28/212 (13%)
Query: 61 LDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGY 120
L+ +S + EI+ I+G +G+GKS+L ++AG P G+ + GS A ++G
Sbjct: 40 LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQ 99
Query: 121 VTQRDTLFPLLTVE-ETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVG---DD 176
+T + +E + LM K +KE+ E + A +G
Sbjct: 100 LTG------IENIELKGLMMGLT--------------KEKIKEIIPEIIEFADIGKFIYQ 139
Query: 177 RVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVIL 236
V+ S G + R+ V +P +L++DE S D T + +D + E +G+T+
Sbjct: 140 PVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKE-QGKTIFF 198
Query: 237 SIHQPGFRIVKMF-NSILMLANGSVLHHGTVD 267
H VK F L L G V +G +
Sbjct: 199 ISHS--LSQVKSFCTKALWLHYGQVKEYGDIK 228
|
Length = 549 |
| >gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.001
Identities = 18/56 (32%), Positives = 33/56 (58%)
Query: 184 GERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIH 239
GE ++V I + + P++LI DEPT+ ++ T+ QI +L + + T++L H
Sbjct: 162 GECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISH 217
|
Length = 330 |
| >gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.002
Identities = 27/96 (28%), Positives = 55/96 (57%), Gaps = 10/96 (10%)
Query: 163 LGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIH---DPKVLILDEPTSGLDSTSALQI 219
LGL+++ + R + +SGGE +R+ + ++++ P + +LDEPT+GL + +
Sbjct: 796 LGLDYLPLGR----PLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKAL 851
Query: 220 IDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILML 255
I +L+ + +G TV++ H +VK+ + +L L
Sbjct: 852 IYVLQSLTH-QGHTVVIIEHN--MHVVKVADYVLEL 884
|
Length = 1809 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.003
Identities = 16/35 (45%), Positives = 27/35 (77%)
Query: 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGK 94
+L G++ + +P E+ AI+GP+G+GKS+L LAG+
Sbjct: 16 ILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGR 50
|
Length = 248 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.004
Identities = 60/220 (27%), Positives = 103/220 (46%), Gaps = 21/220 (9%)
Query: 55 DGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQF 114
+G+ VL GVS + P E + IVG +G+GKS+LL + G VNG I
Sbjct: 1320 EGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGL 1379
Query: 115 RKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRL-PQAQLR-ARVKSLVKELGL-EHVAMA 171
R++ ++ ++ P ++ ++F +R + P + A V + ++ +GL E VA
Sbjct: 1380 RELR----RQFSMIP----QDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASE 1431
Query: 172 RVG-DDRV----RGISGGERRRVSIGFDVIHDPKVLIL-DEPTSGLDSTSALQIIDMLKV 225
G D RV S G+R+ + + ++ IL DE T+ +D QI V
Sbjct: 1432 SEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQI--QATV 1489
Query: 226 MAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGT 265
M+ TVI H+ V ++ I+++ +G+V G+
Sbjct: 1490 MSAFSAYTVITIAHR--LHTVAQYDKIIVMDHGAVAEMGS 1527
|
Length = 1560 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 39.1 bits (91), Expect = 0.004
Identities = 59/225 (26%), Positives = 100/225 (44%), Gaps = 34/225 (15%)
Query: 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSG 119
VL V KP + + I G +G+GKSSL + G ++G I K
Sbjct: 36 VLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLH---- 91
Query: 120 YVTQRDTLFPLLTVEETLMFSAKLRL-----------RLPQAQLRARVKSLVKEL--GLE 166
T R L +L ++ ++FS +R RL +A A++K++VK L GL+
Sbjct: 92 --TLRSRLSIIL--QDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLD 147
Query: 167 HVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVM 226
A+ G + S G+R+ + + +LI+DE T+ +D A + I VM
Sbjct: 148 --AVVTEGGE---NFSVGQRQLFCLARAFVRKSSILIMDEATASID--MATENILQKVVM 200
Query: 227 AETRGRTVILSIHQPGFRIVKMFNS--ILMLANGSVLHHGTVDLL 269
RTV+ H R+ + ++ +L+L+ G ++ T + L
Sbjct: 201 TAFADRTVVTIAH----RVSTILDADLVLVLSRGILVECDTPENL 241
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 643 | |||
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 100.0 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 100.0 | |
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 100.0 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 100.0 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 100.0 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 99.98 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 99.97 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 99.97 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 99.97 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 99.97 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 99.97 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.97 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.97 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 99.96 | |
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 99.96 | |
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 99.96 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 99.95 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 99.95 | |
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 99.95 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.94 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 99.94 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 99.94 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.94 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.93 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 99.92 | |
| COG4170 | 330 | SapD ABC-type antimicrobial peptide transport syst | 99.92 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.92 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.91 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.91 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.91 | |
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 99.91 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 99.9 | |
| PF01061 | 210 | ABC2_membrane: ABC-2 type transporter; InterPro: I | 99.89 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.88 | |
| KOG2355 | 291 | consensus Predicted ABC-type transport, ATPase com | 99.88 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 99.87 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.87 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.85 | |
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 99.85 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.85 | |
| cd03277 | 213 | ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein | 99.84 | |
| COG2401 | 593 | ABC-type ATPase fused to a predicted acetyltransfe | 99.84 | |
| cd03283 | 199 | ABC_MutS-like MutS-like homolog in eukaryotes. The | 99.82 | |
| cd03285 | 222 | ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS | 99.81 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 99.81 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.8 | |
| KOG0064 | 728 | consensus Peroxisomal long-chain acyl-CoA transpor | 99.8 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.79 | |
| cd03241 | 276 | ABC_RecN RecN ATPase involved in DNA repair; ABC ( | 99.79 | |
| cd03227 | 162 | ABC_Class2 ABC-type Class 2 contains systems invol | 99.78 | |
| cd03243 | 202 | ABC_MutS_homologs The MutS protein initiates DNA m | 99.75 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.74 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.73 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.73 | |
| cd03242 | 270 | ABC_RecF RecF is a recombinational DNA repair ATPa | 99.71 | |
| cd03282 | 204 | ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS | 99.7 | |
| TIGR02858 | 270 | spore_III_AA stage III sporulation protein AA. Mem | 99.66 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 99.66 | |
| cd03284 | 216 | ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr | 99.64 | |
| TIGR01247 | 236 | drrB daunorubicin resistance ABC transporter membr | 99.56 | |
| PRK00064 | 361 | recF recombination protein F; Reviewed | 99.55 | |
| smart00534 | 185 | MUTSac ATPase domain of DNA mismatch repair MUTS f | 99.53 | |
| PF02463 | 220 | SMC_N: RecF/RecN/SMC N terminal domain; InterPro: | 99.51 | |
| cd03281 | 213 | ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS | 99.5 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 99.47 | |
| TIGR01291 | 253 | nodJ ABC-2 type transporter, NodJ family. Nearly a | 99.45 | |
| TIGR01069 | 771 | mutS2 MutS2 family protein. Function of MutS2 is u | 99.45 | |
| TIGR00025 | 232 | Mtu_efflux ABC transporter efflux protein, DrrB fa | 99.45 | |
| TIGR03062 | 208 | pip_yhgE_Cterm YhgE/Pip C-terminal domain. This fa | 99.44 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 99.43 | |
| cd03287 | 222 | ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS | 99.43 | |
| TIGR03861 | 253 | phenyl_ABC_PedC alcohol ABC transporter, permease | 99.41 | |
| PRK07721 | 438 | fliI flagellum-specific ATP synthase; Validated | 99.41 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.38 | |
| cd01128 | 249 | rho_factor Transcription termination factor rho is | 99.32 | |
| TIGR00634 | 563 | recN DNA repair protein RecN. All proteins in this | 99.29 | |
| TIGR00611 | 365 | recf recF protein. All proteins in this family for | 99.29 | |
| PRK10869 | 553 | recombination and repair protein; Provisional | 99.26 | |
| PRK15066 | 257 | inner membrane transport permease; Provisional | 99.26 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 99.25 | |
| TIGR00618 | 1042 | sbcc exonuclease SbcC. This family is based on the | 99.25 | |
| PRK00409 | 782 | recombination and DNA strand exchange inhibitor pr | 99.25 | |
| PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 99.24 | |
| PRK14079 | 349 | recF recombination protein F; Provisional | 99.23 | |
| cd03286 | 218 | ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS | 99.23 | |
| PF13304 | 303 | AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T | 99.22 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.21 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 99.17 | |
| TIGR02788 | 308 | VirB11 P-type DNA transfer ATPase VirB11. The VirB | 99.17 | |
| PRK13695 | 174 | putative NTPase; Provisional | 99.14 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 99.12 | |
| PRK13830 | 818 | conjugal transfer protein TrbE; Provisional | 99.1 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 99.08 | |
| PRK10246 | 1047 | exonuclease subunit SbcC; Provisional | 99.06 | |
| COG3910 | 233 | Predicted ATPase [General function prediction only | 99.06 | |
| PRK01156 | 895 | chromosome segregation protein; Provisional | 99.03 | |
| PRK06793 | 432 | fliI flagellum-specific ATP synthase; Validated | 99.01 | |
| TIGR03238 | 504 | dnd_assoc_3 dnd system-associated protein 3. cereu | 98.97 | |
| COG0842 | 286 | ABC-type multidrug transport system, permease comp | 98.94 | |
| PRK06067 | 234 | flagellar accessory protein FlaH; Validated | 98.92 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 98.91 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 98.9 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 98.88 | |
| cd01125 | 239 | repA Hexameric Replicative Helicase RepA. RepA is | 98.88 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 98.83 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 98.8 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 98.77 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 98.76 | |
| PRK13891 | 852 | conjugal transfer protein TrbE; Provisional | 98.74 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 98.72 | |
| TIGR01248 | 152 | drrC daunorubicin resistance protein C. The model | 98.68 | |
| TIGR02655 | 484 | circ_KaiC circadian clock protein KaiC. Members of | 98.67 | |
| TIGR03881 | 229 | KaiC_arch_4 KaiC domain protein, PAE1156 family. M | 98.66 | |
| PRK07196 | 434 | fliI flagellum-specific ATP synthase; Validated | 98.62 | |
| TIGR01026 | 440 | fliI_yscN ATPase FliI/YscN family. This family of | 98.6 | |
| TIGR01420 | 343 | pilT_fam pilus retraction protein PilT. This model | 98.57 | |
| PRK06002 | 450 | fliI flagellum-specific ATP synthase; Validated | 98.51 | |
| PRK05399 | 854 | DNA mismatch repair protein MutS; Provisional | 98.5 | |
| PRK13898 | 800 | type IV secretion system ATPase VirB4; Provisional | 98.48 | |
| COG0419 | 908 | SbcC ATPase involved in DNA repair [DNA replicatio | 98.45 | |
| PRK09825 | 176 | idnK D-gluconate kinase; Provisional | 98.43 | |
| cd02023 | 198 | UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1. | 98.43 | |
| TIGR00416 | 454 | sms DNA repair protein RadA. The gene protuct code | 98.33 | |
| cd01122 | 271 | GP4d_helicase GP4d_helicase is a homohexameric 5'- | 98.31 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 98.31 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 98.28 | |
| TIGR02680 | 1353 | conserved hypothetical protein TIGR02680. Members | 98.28 | |
| PF06422 | 103 | PDR_CDR: CDR ABC transporter; InterPro: IPR010929 | 98.25 | |
| PRK13873 | 811 | conjugal transfer ATPase TrbE; Provisional | 98.24 | |
| cd01121 | 372 | Sms Sms (bacterial radA) DNA repair protein. This | 98.23 | |
| PF12679 | 277 | ABC2_membrane_2: ABC-2 family transporter protein | 98.22 | |
| COG1682 | 263 | TagG ABC-type polysaccharide/polyol phosphate expo | 98.2 | |
| PF09818 | 448 | ABC_ATPase: Predicted ATPase of the ABC class; Int | 98.19 | |
| TIGR03518 | 240 | ABC_perm_GldF gliding motility-associated ABC tran | 98.18 | |
| PRK09270 | 229 | nucleoside triphosphate hydrolase domain-containin | 98.15 | |
| PRK06315 | 442 | type III secretion system ATPase; Provisional | 98.15 | |
| PRK08149 | 428 | ATP synthase SpaL; Validated | 98.14 | |
| PRK10078 | 186 | ribose 1,5-bisphosphokinase; Provisional | 98.13 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 98.13 | |
| TIGR02903 | 615 | spore_lon_C ATP-dependent protease, Lon family. Me | 98.11 | |
| TIGR00554 | 290 | panK_bact pantothenate kinase, bacterial type. Sho | 98.11 |
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-109 Score=941.84 Aligned_cols=563 Identities=41% Similarity=0.712 Sum_probs=501.6
Q ss_pred cccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCC---CccEEEECCCcCCchhhcccEEEEccCCCCCCCCC
Q 006505 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTP---QSGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLT 132 (643)
Q Consensus 56 ~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~---~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lT 132 (643)
..+++|+|||++++|||++||||||||||||||++|+|+..+ .+|+|++||++.+.+.+++.+|||.|||.++|+||
T Consensus 41 ~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LT 120 (613)
T KOG0061|consen 41 KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLT 120 (613)
T ss_pred ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEccccccccccc
Confidence 468999999999999999999999999999999999999976 49999999988888889999999999999999999
Q ss_pred HHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q 006505 133 VEETLMFSAKLRLRL--PQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSG 210 (643)
Q Consensus 133 v~E~l~~~~~~~~~~--~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsg 210 (643)
|+|++.|++.+|++. ++++++++|+++++++||++|+|+++|+...+++||||||||+||.+|++||+||+|||||||
T Consensus 121 V~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSG 200 (613)
T KOG0061|consen 121 VRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSG 200 (613)
T ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCC
Confidence 999999999999986 788899999999999999999999999998899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHHHHHHcCCCCCCCCChhHHH
Q 006505 211 LDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSVSLRMMGLQLPMHVNVVEFA 290 (643)
Q Consensus 211 LD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~~~p~~~n~ad~~ 290 (643)
||+.++.++++.|+++|++ |+|||+++|||+.+++++||++++|++|+++|+|+++++.+||++.|++||++.||+||+
T Consensus 201 LDS~sA~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ff~~~G~~~P~~~Npadf~ 279 (613)
T KOG0061|consen 201 LDSFSALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLEFFSSLGFPCPELENPADFL 279 (613)
T ss_pred cchhhHHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHHHHHhCCCCCCCcCChHHHH
Confidence 9999999999999999997 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcchH--HHHHHhhhcCCccccchhhHHhhhhhhccccCcchhHHHHHhhhhhhhHHhhhcCCCCCCCCCCCHHHHHH
Q 006505 291 IESIDLI--QEQRKIQQENQPRMMLPATQQQKKAEEGESRSGKFTLQQLFQQSKVIDEEIMNVGIEIPRDFANSRFKETI 368 (643)
Q Consensus 291 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~ 368 (643)
+|+++.. .+..... .+.++... ..+. ... ..+ ......... ...........++||.|++
T Consensus 280 l~l~s~~~~~~~~~~~---------~~~~~~~~---~~~~-~~~-~~~---~~~~~~~~~-~~~~~~~~~~~~s~~~q~~ 341 (613)
T KOG0061|consen 280 LDLLSVDSGTRELEEA---------VRIAKLIN---KFSQ-TDN-LKK---TLEALEKSL-STSKKVEIGTSPSWWTQFK 341 (613)
T ss_pred HHHHccCCCchhHHhH---------HHHHHHhh---hccc-cch-hhh---hHHHHhhhc-ccccccccccCCcHHHHHH
Confidence 9998743 1110000 00000000 0000 000 000 000000000 0001111112789999999
Q ss_pred HHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHHHHHHh-HHHHHHHhhHHHHH
Q 006505 369 ILTHRFSKNIFRTKELFACRTIQMLISGIVLGSIFHNVKDDLTGTEEKVGLFAFILTFLLSCTTE-ALPIFLQEREILMK 447 (643)
Q Consensus 369 ~l~~R~~~~~~Rd~~~~~~r~~~~i~~~li~G~~f~~l~~~~~~~~~r~g~lf~~~~~~~~~~~~-~~~~f~~er~v~~r 447 (643)
.|++|.+++.+|||.+...|+++.+++|+++|++||+++++..++++|.|++|+.+.++.+.++. +++.|++||++|.|
T Consensus 342 ~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~f~~~~~~i~~f~~e~~~f~r 421 (613)
T KOG0061|consen 342 ILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDAKGIQNRLGLFFFILSFMTFLSMFGAVPVFPQERPIFLR 421 (613)
T ss_pred HHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998766654 89999999999999
Q ss_pred HhCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHH
Q 006505 448 ETSCGSYRVSSYAIANGLVYLPFLLILAILFSVPLYWIVGLNPNLMAFFHFLLLIWLILYTANSVVVCFSALVPNFIVGN 527 (643)
Q Consensus 448 E~~~~~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~~~~~l~~~~~~s~~~~i~~~~~~~~~a~ 527 (643)
|+.+|+|+.++||+|++++++|+.++.+++|++|+|||+|++++..+|++|++++++..+++++++.++++++||...|+
T Consensus 422 E~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~i~~~~~~~~~a~ 501 (613)
T KOG0061|consen 422 ETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLFISAIVPNLSLAT 501 (613)
T ss_pred HHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccccCCCCccchhhhhhccChhHHHHHHHHHHhhCC-CCccccccCCccccchHHHHHhcCCCCCC
Q 006505 528 SVISGVMGSFFLFSGYFISKHGIPDYWIFMHYISLFKYPFEQFLINEFSD-SDKCLQYIFGKCVVKGEDVLREAGYEEES 606 (643)
Q Consensus 528 ~~~~~~~~~~~lfsGf~i~~~~ip~~~~Wl~yiSp~~y~~eal~~nef~~-~~~C~~~~~~~c~~~G~~~L~~~g~~~~~ 606 (643)
.++++++++|++|+||+++.++||+||+|++|+|+++|+||++++|||.+ ...|.......|..+|.+++++.+++..+
T Consensus 502 ~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 581 (613)
T KOG0061|consen 502 SLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCFLSGNLCCESTGEDVLKQLGFEDSS 581 (613)
T ss_pred ehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccccccccCcCCcccccHHHHHHhcCCcccc
Confidence 99999999999999999999999999999999999999999999999997 36786543357888999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 006505 607 SWRNLVIMVGFILIYRFISYVILRFRCSQRS 637 (643)
Q Consensus 607 ~w~~~~il~~~~~~~~~l~~~~L~~~~~~~~ 637 (643)
.|.|+.++++++++|++++|++|+++.++++
T Consensus 582 ~~~~l~~l~~~~~~~~il~y~~L~~~~~~~~ 612 (613)
T KOG0061|consen 582 FWLDLLVLLAFIVFFRVLGYLALRFRVKRKR 612 (613)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence 9999999999999999999999999887653
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-107 Score=935.41 Aligned_cols=571 Identities=30% Similarity=0.509 Sum_probs=495.4
Q ss_pred ccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCC---ccEEEECCCcCCchhhcccEEEEccCCCCCCCC
Q 006505 55 DGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQ---SGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLL 131 (643)
Q Consensus 55 ~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~---~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~l 131 (643)
.+++++|+|+|+++++||+++|+|||||||||||++|+|+.+|+ +|+|.+||++++...+++.+|||+|+|.+++.+
T Consensus 35 ~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~l 114 (617)
T TIGR00955 35 RPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTL 114 (617)
T ss_pred cCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccC
Confidence 45688999999999999999999999999999999999998875 899999999987667788999999999999999
Q ss_pred CHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHcCChhhhhhhcCCC-cCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q 006505 132 TVEETLMFSAKLRLRL--PQAQLRARVKSLVKELGLEHVAMARVGDD-RVRGISGGERRRVSIGFDVIHDPKVLILDEPT 208 (643)
Q Consensus 132 Tv~E~l~~~~~~~~~~--~~~~~~~~v~~~l~~lgl~~~~~~~vg~~-~~~~LSGGerqRv~ia~aL~~~p~illlDEPt 208 (643)
||+|||.|++.++.+. ++++.+++++++++.+||.+++|+.+|++ ..++|||||||||+||++|+++|++++|||||
T Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPt 194 (617)
T TIGR00955 115 TVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPT 194 (617)
T ss_pred cHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCC
Confidence 9999999999887653 55667788999999999999999999976 47899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHHHHHHcCCCCCCCCChhH
Q 006505 209 SGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSVSLRMMGLQLPMHVNVVE 288 (643)
Q Consensus 209 sgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~~~p~~~n~ad 288 (643)
+|||+.++.++++.|++++++ |+|||+++|||+.+++++||++++|++|+++|+|+++++.+||+++|++||++.||+|
T Consensus 195 sgLD~~~~~~l~~~L~~l~~~-g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad 273 (617)
T TIGR00955 195 SGLDSFMAYSVVQVLKGLAQK-GKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPAD 273 (617)
T ss_pred cchhHHHHHHHHHHHHHHHhC-CCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHH
Confidence 999999999999999999975 9999999999987799999999999999999999999999999999999999999999
Q ss_pred HHHHhcchHHHHHHhhhcCCccccchhhHHhhhhhhccccCcchhHHHHHhhhhhhhHHhhh-cCCCCCCCCCCCHHHHH
Q 006505 289 FAIESIDLIQEQRKIQQENQPRMMLPATQQQKKAEEGESRSGKFTLQQLFQQSKVIDEEIMN-VGIEIPRDFANSRFKET 367 (643)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~Q~ 367 (643)
|++++++..+...... ... .+.+.+.+.+ ++...+...........+..... .......++..++++|+
T Consensus 274 ~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~--------s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~ 343 (617)
T TIGR00955 274 FYVQVLAVIPGSENES-RER-IEKICDSFAV--------SDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQF 343 (617)
T ss_pred HHHHHhhcCcccccch-HHH-HHHHHHHHhc--------chhhHHHHHHhhhhhccccccccccccccccccCCCHHHHH
Confidence 9999876432211000 000 0000000000 00000000000000000000000 00112345678999999
Q ss_pred HHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHHHHH-HhHHHHHHHhhHHHH
Q 006505 368 IILTHRFSKNIFRTKELFACRTIQMLISGIVLGSIFHNVKDDLTGTEEKVGLFAFILTFLLSCT-TEALPIFLQEREILM 446 (643)
Q Consensus 368 ~~l~~R~~~~~~Rd~~~~~~r~~~~i~~~li~G~~f~~l~~~~~~~~~r~g~lf~~~~~~~~~~-~~~~~~f~~er~v~~ 446 (643)
++|++|++++.||||.++.+|+++++++|+++|++||++++++.++++|.|++|+++++..+.+ +..++.|+.||++|+
T Consensus 344 ~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~ 423 (617)
T TIGR00955 344 YALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFL 423 (617)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998887775 467899999999999
Q ss_pred HHhCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHH
Q 006505 447 KETSCGSYRVSSYAIANGLVYLPFLLILAILFSVPLYWIVGLNPNLMAFFHFLLLIWLILYTANSVVVCFSALVPNFIVG 526 (643)
Q Consensus 447 rE~~~~~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~~~~~l~~~~~~s~~~~i~~~~~~~~~a 526 (643)
||+.+|+|++++|++|++++|+|+.++.+++|++|+|||+|+++++.+||+|+++++++.++++++|+++++++|+..+|
T Consensus 424 rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a 503 (617)
T TIGR00955 424 RETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMA 503 (617)
T ss_pred HhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccccCCCCccchhhhhhccChhHHHHHHHHHHhhCCC--Cccccc-cCCccccchHHHHHhcCCC
Q 006505 527 NSVISGVMGSFFLFSGYFISKHGIPDYWIFMHYISLFKYPFEQFLINEFSDS--DKCLQY-IFGKCVVKGEDVLREAGYE 603 (643)
Q Consensus 527 ~~~~~~~~~~~~lfsGf~i~~~~ip~~~~Wl~yiSp~~y~~eal~~nef~~~--~~C~~~-~~~~c~~~G~~~L~~~g~~ 603 (643)
+.+++++++++++|+||+++.++||+||+|++|+||++|++||++.|||.+. .+|.+. ..+.|+.+|+++|+.+|++
T Consensus 504 ~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~~~~c~~~~~~~~c~~~g~~~l~~~g~~ 583 (617)
T TIGR00955 504 LTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSSGEVILETLSFR 583 (617)
T ss_pred HHHHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCccccccCcCcCCCCCcChHHHHHhcCCC
Confidence 9999999999999999999999999999999999999999999999999887 368642 2356999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 006505 604 EESSWRNLVIMVGFILIYRFISYVILRFRCSQR 636 (643)
Q Consensus 604 ~~~~w~~~~il~~~~~~~~~l~~~~L~~~~~~~ 636 (643)
.++.|+|+++|++++++|++++|++|+++.+++
T Consensus 584 ~~~~~~~~~il~~~~~~~~~l~~~~L~~~~~~~ 616 (617)
T TIGR00955 584 NADLYLDLIGLVILIFFFRLLAYFALRIRIRRK 616 (617)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999877654
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-107 Score=935.79 Aligned_cols=565 Identities=29% Similarity=0.477 Sum_probs=475.6
Q ss_pred cccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCC--ccEEEECCCcCCchhhcccEEEEccCC
Q 006505 48 LEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQ--SGSTFVNGSPIDKAQFRKVSGYVTQRD 125 (643)
Q Consensus 48 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~--~G~I~~~g~~~~~~~~~~~i~yv~Q~~ 125 (643)
.++++++|+++++|+|+|+++++||++||+||||||||||||+|+|+.+|+ +|+|.+||+++.. ..++.+|||+|++
T Consensus 71 ~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~-~~~~~i~yv~Q~~ 149 (659)
T PLN03211 71 ISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK-QILKRTGFVTQDD 149 (659)
T ss_pred cccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECch-hhccceEEECccc
Confidence 556778898899999999999999999999999999999999999999885 8999999998753 3456799999999
Q ss_pred CCCCCCCHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEE
Q 006505 126 TLFPLLTVEETLMFSAKLRLRL--PQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLI 203 (643)
Q Consensus 126 ~l~~~lTv~E~l~~~~~~~~~~--~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~ill 203 (643)
.+++.+||+||+.|++.++.+. ++++.+++++++++.+||+++.|+.+|++.+++||||||||++||++|+++|++|+
T Consensus 150 ~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLl 229 (659)
T PLN03211 150 ILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 229 (659)
T ss_pred ccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEE
Confidence 9999999999999988766432 45566678999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHHHHHHcCCCCCCC
Q 006505 204 LDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSVSLRMMGLQLPMH 283 (643)
Q Consensus 204 lDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~~~p~~ 283 (643)
|||||+|||+.++.++++.|++++++ |+|||+++|||+.++.++||++++|++|++++.|+++++.+||+++|++||++
T Consensus 230 LDEPtsgLD~~~~~~l~~~L~~l~~~-g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~ 308 (659)
T PLN03211 230 LDEPTSGLDATAAYRLVLTLGSLAQK-GKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFP 308 (659)
T ss_pred EeCCCCCcCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCC
Confidence 99999999999999999999999874 99999999999866899999999999999999999999999999999999999
Q ss_pred CChhHHHHHhcchHHHHHH--hhhcCCccccchhhHHhhhhhhccccCcchhHHHHHhhh---hhhhHHhh---hcCC-C
Q 006505 284 VNVVEFAIESIDLIQEQRK--IQQENQPRMMLPATQQQKKAEEGESRSGKFTLQQLFQQS---KVIDEEIM---NVGI-E 354 (643)
Q Consensus 284 ~n~ad~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~---~~~~-~ 354 (643)
.|||||++|+++....... ........+.+.+.+.+.. . ....+..... ....+... .... .
T Consensus 309 ~NpADf~ldv~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (659)
T PLN03211 309 MNPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYNTLL-------A--PKVKAAIEMSHFPQANARFVGSASTKEHRS 379 (659)
T ss_pred CCHHHHHHHHcCccccCCCccccccchHHHHHHHHHHhhc-------c--HHHHHHHhhhhhhcchhhhhhccccccccc
Confidence 9999999999875321100 0000000000101110000 0 0000000000 00000000 0000 0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHHH-HHHh
Q 006505 355 IPRDFANSRFKETIILTHRFSKNIFRTKELFACRTIQMLISGIVLGSIFHNVKDDLTGTEEKVGLFAFILTFLLS-CTTE 433 (643)
Q Consensus 355 ~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~~li~G~~f~~l~~~~~~~~~r~g~lf~~~~~~~~-~~~~ 433 (643)
....+.+|||+|+.+|++|++++ |||+.+..+|+++++++|+++|++||+++ +.++++|.|++||++++..+ .++.
T Consensus 380 ~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf~~~~--~~~~~~r~g~lff~~~~~~~~~~~~ 456 (659)
T PLN03211 380 SDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLMWWHSD--FRDVQDRLGLLFFISIFWGVFPSFN 456 (659)
T ss_pred CCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11235678999999999999998 89999999999999999999999999985 67999999999999888654 4568
Q ss_pred HHHHHHHhhHHHHHHhCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHH
Q 006505 434 ALPIFLQEREILMKETSCGSYRVSSYAIANGLVYLPFLLILAILFSVPLYWIVGLNPNLMAFFHFLLLIWLILYTANSVV 513 (643)
Q Consensus 434 ~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~~~~~l~~~~~~s~~ 513 (643)
+++.|+.||+||+||+.+|+|++++|++|++++|+|+.++.+++|++|+|||+||++++.+||+|+++++++.++++++|
T Consensus 457 ~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g 536 (659)
T PLN03211 457 SVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLG 536 (659)
T ss_pred HHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCHHHHHHHHHHHHHHHHHhhccccCCCCccchhhhhhccChhHHHHHHHHHHhhCCC------Cccccc---
Q 006505 514 VCFSALVPNFIVGNSVISGVMGSFFLFSGYFISKHGIPDYWIFMHYISLFKYPFEQFLINEFSDS------DKCLQY--- 584 (643)
Q Consensus 514 ~~i~~~~~~~~~a~~~~~~~~~~~~lfsGf~i~~~~ip~~~~Wl~yiSp~~y~~eal~~nef~~~------~~C~~~--- 584 (643)
+++|+++|+..+|+.+++++++++++||||+++ +||+||+|++|+||++|+|||++.|||++. ..|...
T Consensus 537 ~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~ 614 (659)
T PLN03211 537 LALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWIKYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGS 614 (659)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHHHHhCHHHHHHHHHHHHhcCCccccccccCCCCcccC
Confidence 999999999999999999999999999999997 799999999999999999999999999764 257532
Q ss_pred cCCccccchHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 006505 585 IFGKCVVKGEDVLREAGYEEESSWRNLVIMVGFILIYRFISYVILRFRC 633 (643)
Q Consensus 585 ~~~~c~~~G~~~L~~~g~~~~~~w~~~~il~~~~~~~~~l~~~~L~~~~ 633 (643)
....|...++.++ ...+.|.|+++|++++++|++++|++|++++
T Consensus 615 ~~~~c~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~l~~~~L~~~~ 658 (659)
T PLN03211 615 DRASCKFVEEDVA-----GQISPATSVSVLIFMFVGYRLLAYLALRRIK 658 (659)
T ss_pred CCCCCccchhhhh-----cccchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1234655555444 3456899999999999999999999998654
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-104 Score=974.02 Aligned_cols=577 Identities=23% Similarity=0.368 Sum_probs=492.5
Q ss_pred ccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCC----CCCccEEEECCCcCCc--hhhcccEEEEccCCCCC
Q 006505 55 DGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKL----TPQSGSTFVNGSPIDK--AQFRKVSGYVTQRDTLF 128 (643)
Q Consensus 55 ~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~----~~~~G~I~~~g~~~~~--~~~~~~i~yv~Q~~~l~ 128 (643)
...+++|+|+|+++++||+++|+||||||||||||+|+|+. +|.+|+|.+||++++. ..+++.++||+|+|.++
T Consensus 71 ~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~ 150 (1394)
T TIGR00956 71 TKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHF 150 (1394)
T ss_pred CCcceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccC
Confidence 34578999999999999999999999999999999999996 4679999999998743 23566799999999999
Q ss_pred CCCCHHHHHHHHHHhcCC------CCHHHHHHH-HHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCE
Q 006505 129 PLLTVEETLMFSAKLRLR------LPQAQLRAR-VKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKV 201 (643)
Q Consensus 129 ~~lTv~E~l~~~~~~~~~------~~~~~~~~~-v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~i 201 (643)
+.+||+||+.|+++++.+ .++++..++ ++++++.+||++++|+++|++.+++|||||||||+||++|+++|++
T Consensus 151 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~v 230 (1394)
T TIGR00956 151 PHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKI 230 (1394)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCE
Confidence 999999999999887643 133443334 5779999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHHHHHHcCCCCC
Q 006505 202 LILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSVSLRMMGLQLP 281 (643)
Q Consensus 202 lllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~~~p 281 (643)
++|||||+|||+.++.++++.|++++++.|+|||+++|||+.+++++||+|++|++|+++++|+++++.+||+++|++||
T Consensus 231 lllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~lG~~~p 310 (1394)
T TIGR00956 231 QCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCP 310 (1394)
T ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999866999999999997789999999999999999999999999999999999999
Q ss_pred CCCChhHHHHHhcchHHHHHHhhhcC---CccccchhhHHhhhh------hhcc-ccCc-chhHHHHHhhhhhhhHHhhh
Q 006505 282 MHVNVVEFAIESIDLIQEQRKIQQEN---QPRMMLPATQQQKKA------EEGE-SRSG-KFTLQQLFQQSKVIDEEIMN 350 (643)
Q Consensus 282 ~~~n~ad~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~------~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~ 350 (643)
++.|||||++++++..++........ ...+.+.+.+++... +... .... .....+.+.+..... ..
T Consensus 311 ~~~n~aDfl~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 387 (1394)
T TIGR00956 311 DRQTTADFLTSLTSPAERQIKPGYEKKVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAK---QS 387 (1394)
T ss_pred CCCChHHHHHhccChhhhhccccccccCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHhh---hc
Confidence 99999999999987654332111000 111111111111100 0000 0000 000000000000000 00
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHHHH
Q 006505 351 VGIEIPRDFANSRFKETIILTHRFSKNIFRTKELFACRTIQMLISGIVLGSIFHNVKDDLTGTEEKVGLFAFILTFLLSC 430 (643)
Q Consensus 351 ~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~~li~G~~f~~l~~~~~~~~~r~g~lf~~~~~~~~~ 430 (643)
+.....+++..|+|+|+++|++|++++.||||.++++|+++++++|+++|++||++++|++|+++|.|++||++++.++.
T Consensus 388 ~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~~~~~~~r~g~lf~~~~~~~~~ 467 (1394)
T TIGR00956 388 KRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTSDFYSRGGALFFAILFNAFS 467 (1394)
T ss_pred ccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHH
Confidence 11223456889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHhhHHHHHHhCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccHHHHHHHHHHHHHHHHHHH
Q 006505 431 TTEALPIFLQEREILMKETSCGSYRVSSYAIANGLVYLPFLLILAILFSVPLYWIVGLNPNLMAFFHFLLLIWLILYTAN 510 (643)
Q Consensus 431 ~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~~~~~l~~~~~~ 510 (643)
++..++.++.||+||+||+.+++|++++|++|++++|+|+.++.+++|++|+|||+||++++++||+|+++++++.++++
T Consensus 468 ~~~~i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~ 547 (1394)
T TIGR00956 468 SLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMS 547 (1394)
T ss_pred HHHHHHHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHHHHHHHHH
Confidence 99899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHHHhhccccCCCCccchhhhhhccChhHHHHHHHHHHhhCCC-Ccccc---c--
Q 006505 511 SVVVCFSALVPNFIVGNSVISGVMGSFFLFSGYFISKHGIPDYWIFMHYISLFKYPFEQFLINEFSDS-DKCLQ---Y-- 584 (643)
Q Consensus 511 s~~~~i~~~~~~~~~a~~~~~~~~~~~~lfsGf~i~~~~ip~~~~Wl~yiSp~~y~~eal~~nef~~~-~~C~~---~-- 584 (643)
++++++|+++||..+|+.+++++++++++|+||++|.++||+||+|++|+||++|+|||++.|||++. ..|.. .
T Consensus 548 ~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~nef~~~~~~C~~~~p~g~ 627 (1394)
T TIGR00956 548 HLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECSQYVPSGG 627 (1394)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHHHhhhcCCcccccccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999987 67852 0
Q ss_pred -------cCCcc----------ccchHHHHH-hcCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 006505 585 -------IFGKC----------VVKGEDVLR-EAGYEEESSWRNLVIMVGFILIYRFISYVILRFRCS 634 (643)
Q Consensus 585 -------~~~~c----------~~~G~~~L~-~~g~~~~~~w~~~~il~~~~~~~~~l~~~~L~~~~~ 634 (643)
....| .++|+++|+ .||++.++.|+|++||++|+++|++++++++.+.+.
T Consensus 628 ~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~~~~~~~~~~w~n~gil~~~~v~f~~~~~l~l~~~~~ 695 (1394)
T TIGR00956 628 GYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYYNSHKWRNFGIIIGFTVFFFFVYILLTEFNKG 695 (1394)
T ss_pred CCCCCCccCccccCCCCcCCcccccHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 12235 568999998 589999999999999999999999999999998763
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-102 Score=953.53 Aligned_cols=565 Identities=22% Similarity=0.369 Sum_probs=481.6
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCC---ccEEEECCCcCCchhhcccEEEEccCCCCCCCCCH
Q 006505 57 VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQ---SGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTV 133 (643)
Q Consensus 57 ~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~---~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv 133 (643)
+++||+|+|+.++|||+++|+||||||||||||+|+|+++|+ +|+|.+||+++++...++.++||+|+|.+++.+||
T Consensus 177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV 256 (1470)
T PLN03140 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTV 256 (1470)
T ss_pred cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcH
Confidence 578999999999999999999999999999999999999998 99999999988554446789999999999999999
Q ss_pred HHHHHHHHHhcCCC---------CHHHH------------------------HHHHHHHHHHcCChhhhhhhcCCCcCCC
Q 006505 134 EETLMFSAKLRLRL---------PQAQL------------------------RARVKSLVKELGLEHVAMARVGDDRVRG 180 (643)
Q Consensus 134 ~E~l~~~~~~~~~~---------~~~~~------------------------~~~v~~~l~~lgl~~~~~~~vg~~~~~~ 180 (643)
+|||.|+++++... +.+++ +..++++++.+||++++|+.+|++.+++
T Consensus 257 ~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rg 336 (1470)
T PLN03140 257 KETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRG 336 (1470)
T ss_pred HHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccC
Confidence 99999998765211 11111 1235789999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeE
Q 006505 181 ISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSV 260 (643)
Q Consensus 181 LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 260 (643)
|||||||||+||++|+.+|++++|||||+|||+.++.++++.|++++++.|+|||+++|||+.+++++||+|++|++|++
T Consensus 337 lSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~i 416 (1470)
T PLN03140 337 ISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQI 416 (1470)
T ss_pred CCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceE
Confidence 99999999999999999999999999999999999999999999998866999999999998789999999999999999
Q ss_pred EEecChhHHHHHHHHcCCCCCCCCChhHHHHHhcchHHHHHHhhhcCCc-----cccchhhHHhhhhhhccccCcchhHH
Q 006505 261 LHHGTVDLLSVSLRMMGLQLPMHVNVVEFAIESIDLIQEQRKIQQENQP-----RMMLPATQQQKKAEEGESRSGKFTLQ 335 (643)
Q Consensus 261 v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (643)
+|+|+++++.+||+++|++||++.|||||++++++..+..........+ .+.+.+.+++.. ....+.
T Consensus 417 vy~G~~~~~~~yF~~lGf~cP~~~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~--------~~~~~~ 488 (1470)
T PLN03140 417 VYQGPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFH--------VGMQLE 488 (1470)
T ss_pred EEeCCHHHHHHHHHHcCCCCCCCCChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcH--------HHHHHH
Confidence 9999999999999999999999999999999998864432211100000 001111111100 000000
Q ss_pred HHHhhhhhhhHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhccCCCCh---hh
Q 006505 336 QLFQQSKVIDEEIMNVGIEIPRDFANSRFKETIILTHRFSKNIFRTKELFACRTIQMLISGIVLGSIFHNVKDDL---TG 412 (643)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~~li~G~~f~~l~~~~---~~ 412 (643)
+..... .++..........++|..|++.|++.|++|++++++||+.+++.|+++.+++|+++|++||+++.++ .+
T Consensus 489 ~~~~~~--~~~~~~~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~ 566 (1470)
T PLN03140 489 NELSVP--FDKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEED 566 (1470)
T ss_pred HHHhhh--hhhhhcccccccCCCCcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchh
Confidence 000000 0000000111123568899999999999999999999999999999999999999999999997542 34
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHhCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccH
Q 006505 413 TEEKVGLFAFILTFLLSCTTEALPIFLQEREILMKETSCGSYRVSSYAIANGLVYLPFLLILAILFSVPLYWIVGLNPNL 492 (643)
Q Consensus 413 ~~~r~g~lf~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~ 492 (643)
.+.+.|++||++++.++.+++.++.++.||+||+|||++++|++++|++|++++|+|+.++.+++|++|+|||+||++++
T Consensus 567 ~~~~~g~lff~~l~~~~~~~~~l~~~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~ 646 (1470)
T PLN03140 567 GALYIGALLFSMIINMFNGFAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEA 646 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCch
Confidence 56788999999999889899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhccccCCCCccchhhhhhccChhHHHHHHHHH
Q 006505 493 MAFFHFLLLIWLILYTANSVVVCFSALVPNFIVGNSVISGVMGSFFLFSGYFISKHGIPDYWIFMHYISLFKYPFEQFLI 572 (643)
Q Consensus 493 ~~f~~f~~~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lfsGf~i~~~~ip~~~~Wl~yiSp~~y~~eal~~ 572 (643)
++||+|+++++++.++++++++++++++|++.+|+.+++++++++++|+||++|.++||+||+|++|+||++|||||+++
T Consensus 647 ~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~ 726 (1470)
T PLN03140 647 SRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAV 726 (1470)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCC-C-ccccccCCccccchHHHHHhcCCCCCC--hHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 006505 573 NEFSDS-D-KCLQYIFGKCVVKGEDVLREAGYEEES--SWRNLVIMVGFILIYRFISYVILRFRC 633 (643)
Q Consensus 573 nef~~~-~-~C~~~~~~~c~~~G~~~L~~~g~~~~~--~w~~~~il~~~~~~~~~l~~~~L~~~~ 633 (643)
|||.+. . .|.. .+.+..+|+++|+.+|+..++ .|+|+++|++|+++|+++++++|++.+
T Consensus 727 NEf~~~~~~~~~~--~~~~~~~G~~~L~~~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~ 789 (1470)
T PLN03140 727 NEMFAPRWMNKMA--SDNSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLN 789 (1470)
T ss_pred HhccCccccCccc--CCCCcccHHHHHHhcCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999775 1 1211 123457899999999998654 588999999999999999999999876
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-101 Score=936.32 Aligned_cols=562 Identities=23% Similarity=0.401 Sum_probs=480.4
Q ss_pred cccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCC--CccEEEECCCcCCchhhcccEEEEccCCCCCCCCCH
Q 006505 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTP--QSGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTV 133 (643)
Q Consensus 56 ~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~--~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv 133 (643)
+.+.+|+|||++++|||++||+||||||||||||+|+|+.++ .+|+|.+||++.....+++.+|||+|+|.+++.+||
T Consensus 891 ~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV 970 (1470)
T PLN03140 891 DRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTV 970 (1470)
T ss_pred CCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcH
Confidence 456799999999999999999999999999999999999874 589999999987655667789999999999999999
Q ss_pred HHHHHHHHHhcCCC--CHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Q 006505 134 EETLMFSAKLRLRL--PQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGL 211 (643)
Q Consensus 134 ~E~l~~~~~~~~~~--~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgL 211 (643)
+|||.|++.++.+. +++++.++++++++.+||.+++|+.+|+..+++|||||||||+||++|+++|++|||||||+||
T Consensus 971 ~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgL 1050 (1470)
T PLN03140 971 RESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1050 (1470)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Confidence 99999998776542 4556667899999999999999999998778999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeC-CeEEEecCh----hHHHHHHHHc-CCC-CCCCC
Q 006505 212 DSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLAN-GSVLHHGTV----DLLSVSLRMM-GLQ-LPMHV 284 (643)
Q Consensus 212 D~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~-G~iv~~G~~----~~~~~~f~~~-g~~-~p~~~ 284 (643)
|+.++..+++.|++++++ |+|||+++|||+.++++.||++++|++ |+++|+|++ +++.+||+++ |.+ ||++.
T Consensus 1051 D~~~a~~v~~~L~~l~~~-g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~p~~~ 1129 (1470)
T PLN03140 1051 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKY 1129 (1470)
T ss_pred CHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhcCCCCCCCCCC
Confidence 999999999999999875 999999999998668899999999996 899999996 5799999998 664 99999
Q ss_pred ChhHHHHHhcchHHHHHHhhhcCCccccchhhHHhhhhhhccccCcchhHHHHHhhhhhhhHHhhhcCCCCCCCCCCCHH
Q 006505 285 NVVEFAIESIDLIQEQRKIQQENQPRMMLPATQQQKKAEEGESRSGKFTLQQLFQQSKVIDEEIMNVGIEIPRDFANSRF 364 (643)
Q Consensus 285 n~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 364 (643)
|||||++|+++...+.. ....+.+.+++... .....+..++....... .......++++.|+|
T Consensus 1130 NPAd~~l~v~~~~~~~~-------~~~d~~~~~~~s~~--------~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~s~~ 1192 (1470)
T PLN03140 1130 NPATWMLEVSSLAAEVK-------LGIDFAEHYKSSSL--------YQRNKALVKELSTPPPG--ASDLYFATQYSQSTW 1192 (1470)
T ss_pred Cchhhhhhhhccccccc-------ccchHHHHHhccHH--------HHHHHHHHHHhccCCCC--ccccccCccccCCHH
Confidence 99999999976432110 00111122211100 00000000000000000 001112456889999
Q ss_pred HHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhccCCCCh---hhHHHHHHHHHHHHHHHHHHHH-hHHHHHHH
Q 006505 365 KETIILTHRFSKNIFRTKELFACRTIQMLISGIVLGSIFHNVKDDL---TGTEEKVGLFAFILTFLLSCTT-EALPIFLQ 440 (643)
Q Consensus 365 ~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~~li~G~~f~~l~~~~---~~~~~r~g~lf~~~~~~~~~~~-~~~~~f~~ 440 (643)
+|+++|++|+++++||||.++.+|+++++++|+++|++||++++++ .++++|.|++|+++++..+..+ +.+|.|..
T Consensus 1193 ~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~ 1272 (1470)
T PLN03140 1193 GQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAV 1272 (1470)
T ss_pred HHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999865 5788899999999888777554 57899999
Q ss_pred hhHHHHHHhCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 006505 441 EREILMKETSCGSYRVSSYAIANGLVYLPFLLILAILFSVPLYWIVGLNPNLMAFFHFLLLIWLILYTANSVVVCFSALV 520 (643)
Q Consensus 441 er~v~~rE~~~~~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~~~~~l~~~~~~s~~~~i~~~~ 520 (643)
||+||+||+++|+|++++|++|++++|+|+.++.+++|++|+|||+||++++++||+|+++++++.++++++|+++++++
T Consensus 1273 eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~ 1352 (1470)
T PLN03140 1273 ERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLT 1352 (1470)
T ss_pred HHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhhccccCCCCccchhhhhhccChhHHHHHHHHHHhhCCC-CccccccCCccccchHHHH-H
Q 006505 521 PNFIVGNSVISGVMGSFFLFSGYFISKHGIPDYWIFMHYISLFKYPFEQFLINEFSDS-DKCLQYIFGKCVVKGEDVL-R 598 (643)
Q Consensus 521 ~~~~~a~~~~~~~~~~~~lfsGf~i~~~~ip~~~~Wl~yiSp~~y~~eal~~nef~~~-~~C~~~~~~~c~~~G~~~L-~ 598 (643)
||..+|..+++++++++++|+||++|.++||+||+|++|+||++|++++++.|||++. .+|... .+....++++++ +
T Consensus 1353 p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~~isp~~y~~~~l~~~~f~~~~~~~~~~-~~~~~~~~~~~~~~ 1431 (1470)
T PLN03140 1353 PNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYGDVEDTIKVP-GGAPDPTIKWYIQD 1431 (1470)
T ss_pred CcHHHHHHHHHHHHHHHHHHeeeccChHHCchHHHHHHHcCHHHHHHhhhHHHHhCCCCCcccCC-CCCCCCcHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999987 344321 111123577774 7
Q ss_pred hcCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 006505 599 EAGYEEESSWRNLVIMVGFILIYRFISYVILRFRCSQR 636 (643)
Q Consensus 599 ~~g~~~~~~w~~~~il~~~~~~~~~l~~~~L~~~~~~~ 636 (643)
.|||++++.|++++++++|+++|++++++++++.+..+
T Consensus 1432 ~~g~~~~~~~~~~~il~~~~~~f~~~~~~~~~~~~~q~ 1469 (1470)
T PLN03140 1432 HYGYDPDFMGPVAAVLVGFTVFFAFIFAFCIRTLNFQT 1469 (1470)
T ss_pred hcCcCcccccchhhhHHHHHHHHHHHHHHHHHHhhccc
Confidence 89999999999999999999999999999998876554
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-100 Score=931.92 Aligned_cols=571 Identities=25% Similarity=0.400 Sum_probs=485.1
Q ss_pred hhccccccccc----ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCC---CCccEEEECCCcCCchhhcccE
Q 006505 46 SKLEEAADSDG----VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLT---PQSGSTFVNGSPIDKAQFRKVS 118 (643)
Q Consensus 46 ~~~~~~~~~~~----~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~---~~~G~I~~~g~~~~~~~~~~~i 118 (643)
++.+|++++++ .+.+|+|||+++++||++||+||||||||||||+|+|+.+ |++|+|.+||+++. ..+++.+
T Consensus 760 l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~-~~~~~~i 838 (1394)
T TIGR00956 760 FHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD-SSFQRSI 838 (1394)
T ss_pred EEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC-hhhhcce
Confidence 46788877763 4689999999999999999999999999999999999987 67899999999885 3567889
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHh
Q 006505 119 GYVTQRDTLFPLLTVEETLMFSAKLRLRL--PQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVI 196 (643)
Q Consensus 119 ~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~--~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~ 196 (643)
|||+|+|.+++.+||+||+.|++.++.+. ++++++++++++++.+||.+++|+.+|+. ..+|||||||||+||+||+
T Consensus 839 ~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~-~~~LSgGqrqRl~Ia~aL~ 917 (1394)
T TIGR00956 839 GYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVP-GEGLNVEQRKRLTIGVELV 917 (1394)
T ss_pred eeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCC-CCCCCHHHhhHHHHHHHHH
Confidence 99999999999999999999998877542 45666788999999999999999988753 3489999999999999999
Q ss_pred cCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCC-eEEEecCh----hHHH
Q 006505 197 HDPK-VLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANG-SVLHHGTV----DLLS 270 (643)
Q Consensus 197 ~~p~-illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G-~iv~~G~~----~~~~ 270 (643)
.+|+ +|||||||+|||+.++..+++.|++++++ |+|||+++|||+..+++.||++++|++| +++++|++ +++.
T Consensus 918 ~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~-g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~~~~ 996 (1394)
T TIGR00956 918 AKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADH-GQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTII 996 (1394)
T ss_pred cCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccchHH
Confidence 9997 99999999999999999999999999875 9999999999986677899999999987 99999997 5689
Q ss_pred HHHHHcCC-CCCCCCChhHHHHHhcchHHHHHHhhhcCCccccchhhHHhhhhhhccccCcchhHHHHHhhhhhhhHHhh
Q 006505 271 VSLRMMGL-QLPMHVNVVEFAIESIDLIQEQRKIQQENQPRMMLPATQQQKKAEEGESRSGKFTLQQLFQQSKVIDEEIM 349 (643)
Q Consensus 271 ~~f~~~g~-~~p~~~n~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (643)
+||++.|+ +||++.|||||++|+++....... ...+.+.+++.... ......++........ .+.
T Consensus 997 ~yf~~~G~~~~p~~~NpAd~~ldvi~~~~~~~~-------~~~~~~~~~~s~~~----~~~~~~~~~~~~~~~~-~~~-- 1062 (1394)
T TIGR00956 997 NYFEKHGAPKCPEDANPAEWMLEVIGAAPGAHA-------NQDYHEVWRNSSEY----QAVKNELDRLEAELSK-AED-- 1062 (1394)
T ss_pred HHHHhcCCCCCCCCCCHHHHHHHHhhcccccch-------hccHHHHHhcCHHH----HHHHHHHHHhhccccc-Ccc--
Confidence 99999996 999999999999999864221100 01111111110000 0000000000000000 000
Q ss_pred hcCCCCCCCCCCCHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHHH
Q 006505 350 NVGIEIPRDFANSRFKETIILTHRFSKNIFRTKELFACRTIQMLISGIVLGSIFHNVKDDLTGTEEKVGLFAFILTFLLS 429 (643)
Q Consensus 350 ~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~~li~G~~f~~l~~~~~~~~~r~g~lf~~~~~~~~ 429 (643)
.......+++++|+|+|+++|++|++++.||||.++++|+++++++|+++|++||++++++.|+|+|.|++|+.+.+..+
T Consensus 1063 ~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~~~~~i~~~~g~~f~~~~~~~~ 1142 (1394)
T TIGR00956 1063 DNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTSLQGLQNQMFAVFMATVLFNP 1142 (1394)
T ss_pred ccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 00011224688999999999999999999999999999999999999999999999999999999999999998887777
Q ss_pred HHHhHHHHHHHhhHHH-HHHhCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccHHH-------HHHHHHH
Q 006505 430 CTTEALPIFLQEREIL-MKETSCGSYRVSSYAIANGLVYLPFLLILAILFSVPLYWIVGLNPNLMA-------FFHFLLL 501 (643)
Q Consensus 430 ~~~~~~~~f~~er~v~-~rE~~~~~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~-------f~~f~~~ 501 (643)
.....+|.|+.||.+| +||+.+|+|++++|++|++++|+|+.++.+++|++|+|||+||++++.. |++|+++
T Consensus 1143 ~~~~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~~~ 1222 (1394)
T TIGR00956 1143 LIQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLL 1222 (1394)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccccccccchHHHHHHH
Confidence 6677899999999886 9999999999999999999999999999999999999999999988766 9999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhccccCCCCccchhhhhhccChhHHHHHHHHHHhhCCC-Cc
Q 006505 502 IWLILYTANSVVVCFSALVPNFIVGNSVISGVMGSFFLFSGYFISKHGIPDYWIFMHYISLFKYPFEQFLINEFSDS-DK 580 (643)
Q Consensus 502 ~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lfsGf~i~~~~ip~~~~Wl~yiSp~~y~~eal~~nef~~~-~~ 580 (643)
++++.++++++|+++++++|+..+|+.+++++++++++|+||++|.++||+||+|++|+||++|++|+++.|||++. ..
T Consensus 1223 ~~~~~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~~~w~~~~sp~~y~~~~l~~~~~~~~~~~ 1302 (1394)
T TIGR00956 1223 STMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLSTGLADVPVT 1302 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcHHHhHHHhcCHHHHHHHHHHHHHcCCCeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987 45
Q ss_pred cccc--------------------------------cCCcc---c-cchHHHHHhcCCCCCChHHHHHHHHHHHHHHHHH
Q 006505 581 CLQY--------------------------------IFGKC---V-VKGEDVLREAGYEEESSWRNLVIMVGFILIYRFI 624 (643)
Q Consensus 581 C~~~--------------------------------~~~~c---~-~~G~~~L~~~g~~~~~~w~~~~il~~~~~~~~~l 624 (643)
|.+. ....| + .+|+++|+.+|++.++.|+|++++++|++++ ++
T Consensus 1303 C~~~e~~~f~pp~~~tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l~~~~~~~~~~w~~~~i~~~~~~~~-~~ 1381 (1394)
T TIGR00956 1303 CKVKELLTFNPPSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLEPISSKYSGRWRNFGIFIAFIFFN-II 1381 (1394)
T ss_pred cCccccceecCCCCCCHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHHHHcCCcccccccchhhhhHHHHHH-HH
Confidence 6431 01124 3 4999999999999999999999999999988 78
Q ss_pred HHHHHhhccc
Q 006505 625 SYVILRFRCS 634 (643)
Q Consensus 625 ~~~~L~~~~~ 634 (643)
++++|+++.+
T Consensus 1382 ~~~~l~~~~r 1391 (1394)
T TIGR00956 1382 ATVFFYWLAR 1391 (1394)
T ss_pred HHHhhheEEE
Confidence 8888887643
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-96 Score=842.68 Aligned_cols=578 Identities=27% Similarity=0.437 Sum_probs=493.8
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCC---ccEEEECCCcCCchhhcccEEEEccCCCCCCCCCH
Q 006505 57 VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQ---SGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTV 133 (643)
Q Consensus 57 ~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~---~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv 133 (643)
..++|+|+|+-++||+++.++||+||||||||++|+|..+.. .|+|.+||.+.+....++.++|++|+|.|+|.|||
T Consensus 127 ~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTV 206 (1391)
T KOG0065|consen 127 KIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTV 206 (1391)
T ss_pred cceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEE
Confidence 347999999999999999999999999999999999987653 78999999998664447889999999999999999
Q ss_pred HHHHHHHHHhcCCC------CHHHHH-HHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q 006505 134 EETLMFSAKLRLRL------PQAQLR-ARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDE 206 (643)
Q Consensus 134 ~E~l~~~~~~~~~~------~~~~~~-~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDE 206 (643)
+|+|.|+++++.+. ++.+.. +..+.+++.+||++|+||+|||..+|++||||||||++|.+++.+|+++++||
T Consensus 207 reTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De 286 (1391)
T KOG0065|consen 207 RETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDE 286 (1391)
T ss_pred eehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeec
Confidence 99999999998762 222222 25789999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHHHHHHcCCCCCCCCCh
Q 006505 207 PTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSVSLRMMGLQLPMHVNV 286 (643)
Q Consensus 207 PtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~~~p~~~n~ 286 (643)
+|+|||+.++.++++.||++++..+.|++++.|||+.+++++||+|++|.+|+++|+||.+++.+||+++|+.||++.++
T Consensus 287 ~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~ 366 (1391)
T KOG0065|consen 287 ITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGT 366 (1391)
T ss_pred ccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhcchHHHHHHhhhcCCccccch-hhHHhhhhhhccccCcchhHHHHHhhhhhhhHHhhhcCCCCCCCCCCCHHH
Q 006505 287 VEFAIESIDLIQEQRKIQQENQPRMMLP-ATQQQKKAEEGESRSGKFTLQQLFQQSKVIDEEIMNVGIEIPRDFANSRFK 365 (643)
Q Consensus 287 ad~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 365 (643)
|||+.++++..+..+............. ....+. . .+......+....... .++.-..+.....++|..|+|.
T Consensus 367 ADfLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~---~-~~s~~~~~l~~~l~~~--~~~~k~~~~al~s~~y~v~~~~ 440 (1391)
T KOG0065|consen 367 ADFLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEY---F-LNSEDYAKLKKELSKP--YDKSKKHKAALVSSKYSVPYWE 440 (1391)
T ss_pred HHHHHHhhcCccccccccccCCCcccCCHHHHHHH---H-hcchhhHHHHHHhcch--hhhhhccchhhcCCceeccHHH
Confidence 9999999873222111110100000000 000000 0 0000000000000000 0000001112345778999999
Q ss_pred HHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhccCC-CChhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHH
Q 006505 366 ETIILTHRFSKNIFRTKELFACRTIQMLISGIVLGSIFHNVK-DDLTGTEEKVGLFAFILTFLLSCTTEALPIFLQEREI 444 (643)
Q Consensus 366 Q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~~li~G~~f~~l~-~~~~~~~~r~g~lf~~~~~~~~~~~~~~~~f~~er~v 444 (643)
|++.|++|.++.+.||..++..++++.+++|+++|++|++.+ ++..+.+.|.|++||++++.++.+++.++..++.|||
T Consensus 441 qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~~t~~~~~~~~~~lffsll~~~f~~laEi~~~~~~~pv 520 (1391)
T KOG0065|consen 441 QVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPMSTTSGGYSRGGALFFALLFNLFNGLAEIALTFQRLPV 520 (1391)
T ss_pred HHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccCcccccchhhhhHHHHHHHHHHHHhHHHHHHHHhhcch
Confidence 999999999999999999999999999999999999999999 8888999999999999999999999999999999999
Q ss_pred HHHHhCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHH
Q 006505 445 LMKETSCGSYRVSSYAIANGLVYLPFLLILAILFSVPLYWIVGLNPNLMAFFHFLLLIWLILYTANSVVVCFSALVPNFI 524 (643)
Q Consensus 445 ~~rE~~~~~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~~~~~l~~~~~~s~~~~i~~~~~~~~ 524 (643)
|+|||...+|+|+||.++.+++++|+.++.+++|.+|+||++||.+++++||.+++++++++.|++++++++++++++..
T Consensus 521 ~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~ 600 (1391)
T KOG0065|consen 521 FYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLS 600 (1391)
T ss_pred HHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCCccchhhhhhccChhHHHHHHHHHHhhCCC-Ccccccc---------CCcc-----
Q 006505 525 VGNSVISGVMGSFFLFSGYFISKHGIPDYWIFMHYISLFKYPFEQFLINEFSDS-DKCLQYI---------FGKC----- 589 (643)
Q Consensus 525 ~a~~~~~~~~~~~~lfsGf~i~~~~ip~~~~Wl~yiSp~~y~~eal~~nef~~~-~~C~~~~---------~~~c----- 589 (643)
+|+.++++.++.+.+++||+||.++||+||+|++|+||+.|++|++++|||+++ ..|.+.+ ...|
T Consensus 601 ~An~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c~~~~~ 680 (1391)
T KOG0065|consen 601 IANLIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVCAATGA 680 (1391)
T ss_pred HHhhHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccchhhcc
Confidence 999999999999999999999999999999999999999999999999999998 6787321 1234
Q ss_pred -----ccchHHHHH-hcCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Q 006505 590 -----VVKGEDVLR-EAGYEEESSWRNLVIMVGFILIYRFISYVILRFRCSQRSFRR 640 (643)
Q Consensus 590 -----~~~G~~~L~-~~g~~~~~~w~~~~il~~~~~~~~~l~~~~L~~~~~~~~~~~ 640 (643)
.+.|.++++ +|++++.+.|+|++|++||.++|.++..+++.|.+.-.....
T Consensus 681 ~~G~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~~~~~~ 737 (1391)
T KOG0065|consen 681 TLGNDYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKPLKKSGA 737 (1391)
T ss_pred ccCceEEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCccccccc
Confidence 235666663 577889999999999999999999999999988775444443
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-96 Score=846.66 Aligned_cols=564 Identities=27% Similarity=0.450 Sum_probs=476.4
Q ss_pred cccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCC--ccEEEECCCcCCchhhcccEEEEccCCCCCCCCCH
Q 006505 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQ--SGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTV 133 (643)
Q Consensus 56 ~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~--~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv 133 (643)
+.+++|+|||+.++||.++||||+||||||||||+|||+.... +|+|++||.|.+++.++|.+|||.|+|.|.+.+||
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TV 881 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTV 881 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccch
Confidence 6788999999999999999999999999999999999998765 99999999999878899999999999999999999
Q ss_pred HHHHHHHHHhcCCC--CHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCC-CEEEEeCCCCC
Q 006505 134 EETLMFSAKLRLRL--PQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDP-KVLILDEPTSG 210 (643)
Q Consensus 134 ~E~l~~~~~~~~~~--~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p-~illlDEPtsg 210 (643)
+|.|.|+|.+|++. +.+++.+.|+++++.++|++++|..||+.. .|||.+||||++||.+|+.+| .||+|||||||
T Consensus 882 rESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G-~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSG 960 (1391)
T KOG0065|consen 882 RESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPG-SGLSTEQRKRLTIGVELVANPSSILFLDEPTSG 960 (1391)
T ss_pred HHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCC-CCCCHHHhceeeEEEEEecCCceeEEecCCCCC
Confidence 99999999999875 667777899999999999999999999877 999999999999999999999 89999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeC-CeEEEecChhH----HHHHHHHcC-CCCCCCC
Q 006505 211 LDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLAN-GSVLHHGTVDL----LSVSLRMMG-LQLPMHV 284 (643)
Q Consensus 211 LD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~-G~iv~~G~~~~----~~~~f~~~g-~~~p~~~ 284 (643)
||+.++..+++.+|++++. |+||+||+|||+.++++.||++++|++ |++||.|+..+ +.+||++.| .+||+..
T Consensus 961 LDsqaA~~i~~~lrkla~t-GqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~li~YFes~~~~~~~~~~ 1039 (1391)
T KOG0065|consen 961 LDSQAAAIVMRFLRKLADT-GQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKLIEYFESIGGVKCISDE 1039 (1391)
T ss_pred ccHHHHHHHHHHHHHHHhc-CCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHHHHHHHhcCCccCCCCC
Confidence 9999999999999999985 999999999999999999999999975 79999999865 567999986 8999999
Q ss_pred ChhHHHHHhcchHHHHHHhhhcCCccccchhhHHhhhhhhccccCcchhHHHHHhhhhhhhHHhhhcCCCCCCCCCCCHH
Q 006505 285 NVVEFAIESIDLIQEQRKIQQENQPRMMLPATQQQKKAEEGESRSGKFTLQQLFQQSKVIDEEIMNVGIEIPRDFANSRF 364 (643)
Q Consensus 285 n~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 364 (643)
|||||++|+++...+.. ....+.+.|++... ....+..++++.+.... .......+++|+.|+|
T Consensus 1040 NPA~~mLevi~~~~~~~-------~~~D~a~~w~~S~e----~k~~~e~v~~l~~~~~~-----~~~~~~~~~~fa~s~~ 1103 (1391)
T KOG0065|consen 1040 NPAEWMLEVIGAGAEAS-------LSVDFAEIWKNSEE----YKRNKELVKELSQPPPG-----FSTDLEFKTRFAQSLW 1103 (1391)
T ss_pred ChHHHHHhhcccccccc-------cCccHHHHHhccHH----HHHHHHHHHHHhcCCcc-----CCcccccccccchhHH
Confidence 99999999987543221 11112222221110 00000111111111111 0012234567999999
Q ss_pred HHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHHHHHHh-HHHHHHHhhH
Q 006505 365 KETIILTHRFSKNIFRTKELFACRTIQMLISGIVLGSIFHNVKDDLTGTEEKVGLFAFILTFLLSCTTE-ALPIFLQERE 443 (643)
Q Consensus 365 ~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~~li~G~~f~~l~~~~~~~~~r~g~lf~~~~~~~~~~~~-~~~~f~~er~ 443 (643)
.|++.+++|++..+||||.++++|++..++.||++|+.||+.+++..|+||.+|+.|+.+++......+ ..+....||.
T Consensus 1104 ~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g~~~q~lqn~m~a~yma~v~~~~~~~~~~~~~v~~e~~ 1183 (1391)
T KOG0065|consen 1104 YQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVGHNVQGLQNAMGAAYMATVFSGPNNNQLQQPAVATERL 1183 (1391)
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecCCcHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhhh
Confidence 999999999999999999999999999999999999999999999999999999999999887666655 4556667999
Q ss_pred HHHHHhCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCH
Q 006505 444 ILMKETSCGSYRVSSYAIANGLVYLPFLLILAILFSVPLYWIVGLNPNLMAFFHFLLLIWLILYTANSVVVCFSALVPNF 523 (643)
Q Consensus 444 v~~rE~~~~~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~~~~~l~~~~~~s~~~~i~~~~~~~ 523 (643)
+++||+++|+|++.||++|++++|+|+.++++++|.+++|+|+|+..++.+|++|++..+++.++.+++|+++.+++||.
T Consensus 1184 y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~ 1263 (1391)
T KOG0065|consen 1184 YEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFWFLLFMFIFFLYFTTLGMMLVSLTPNL 1263 (1391)
T ss_pred heeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCccchhhhhhccChhHHHHHHHHHHhhCCC-Ccccccc----CCccccc-hHHHH
Q 006505 524 IVGNSVISGVMGSFFLFSGYFISKHGIPDYWIFMHYISLFKYPFEQFLINEFSDS-DKCLQYI----FGKCVVK-GEDVL 597 (643)
Q Consensus 524 ~~a~~~~~~~~~~~~lfsGf~i~~~~ip~~~~Wl~yiSp~~y~~eal~~nef~~~-~~C~~~~----~~~c~~~-G~~~L 597 (643)
++|..+.++++.++.+||||++|++.||.||+|+||+||+.|..++++..+++|. ..|...+ ++.|..+ |+.+.
T Consensus 1264 ~~Aav~~s~~~s~~~~F~G~l~p~~~iP~fW~wmy~lsP~ty~l~gli~~~~~d~~v~c~~~e~~~~~pp~g~tcge~m~ 1343 (1391)
T KOG0065|consen 1264 QTAAVIASLFFSFWNLFSGFLQPRSLIPKFWIWMYYLSPVTYTLEGLISSQLGDVEVTCEDSEMNYFDPPSGQTCGEFME 1343 (1391)
T ss_pred hHHHHHHHHHHHHHHHhcccccccccccceeeeeeecCcHHHHHHHHHHHHhCCCceeeecCCccccCCCCCcCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999987 5675421 1122222 33333
Q ss_pred HhcC----CCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 006505 598 REAG----YEEESSWRNLVIMVGFILIYRFISYVILRFRCSQRS 637 (643)
Q Consensus 598 ~~~g----~~~~~~w~~~~il~~~~~~~~~l~~~~L~~~~~~~~ 637 (643)
..+| +.++..-...++..++.+++..++.+..++.++.+.
T Consensus 1344 ~~~~~~~Gy~~n~~a~~~c~~c~y~v~~~~l~~f~~~y~~~wrn 1387 (1391)
T KOG0065|consen 1344 DFFGEGTGYLHNPLATTACVYCAYTVADAFLAAFNIKYLNFWRN 1387 (1391)
T ss_pred HHhccCcceeccCcceeEEEEeeeehHHHHHHHHHHHHHHHHHh
Confidence 3456 554444444455555667777777777766554443
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-57 Score=434.62 Aligned_cols=231 Identities=32% Similarity=0.545 Sum_probs=210.8
Q ss_pred hhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCC----chhhcccEEE
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPID----KAQFRKVSGY 120 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~----~~~~~~~i~y 120 (643)
+++++|++|+||...+|+|||+++++||+++|+||||||||||||||+|+.+|++|+|.++|+++. ....|+.+|+
T Consensus 2 mi~i~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGm 81 (240)
T COG1126 2 MIEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGM 81 (240)
T ss_pred eEEEEeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCe
Confidence 467899999999999999999999999999999999999999999999999999999999997663 2467899999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCC
Q 006505 121 VTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPK 200 (643)
Q Consensus 121 v~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~ 200 (643)
|+|+..|||++||.||+.++...-.+.++++.++++.++|+++||.+.+ +.+|.+|||||||||+|||||+.+|+
T Consensus 82 VFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka-----~~yP~qLSGGQqQRVAIARALaM~P~ 156 (240)
T COG1126 82 VFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKA-----DAYPAQLSGGQQQRVAIARALAMDPK 156 (240)
T ss_pred ecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhh-----hhCccccCcHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999865545668899999999999999999888 45899999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHHHHHHcCCCC
Q 006505 201 VLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSVSLRMMGLQL 280 (643)
Q Consensus 201 illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~~~ 280 (643)
++|+|||||+|||+...++.+.++++|++ |.|.|++||++.. +.+.+|||+.|++|+++..|+++++. ..
T Consensus 157 vmLFDEPTSALDPElv~EVL~vm~~LA~e-GmTMivVTHEM~F-Ar~VadrviFmd~G~iie~g~p~~~f--------~~ 226 (240)
T COG1126 157 VMLFDEPTSALDPELVGEVLDVMKDLAEE-GMTMIIVTHEMGF-AREVADRVIFMDQGKIIEEGPPEEFF--------DN 226 (240)
T ss_pred EEeecCCcccCCHHHHHHHHHHHHHHHHc-CCeEEEEechhHH-HHHhhheEEEeeCCEEEEecCHHHHh--------cC
Confidence 99999999999999999999999999986 9999999999986 88999999999999999999998874 34
Q ss_pred CCCCChhHHH
Q 006505 281 PMHVNVVEFA 290 (643)
Q Consensus 281 p~~~n~ad~~ 290 (643)
|.+....+|+
T Consensus 227 p~~~R~~~FL 236 (240)
T COG1126 227 PKSERTRQFL 236 (240)
T ss_pred CCCHHHHHHH
Confidence 5544455554
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-53 Score=413.00 Aligned_cols=222 Identities=27% Similarity=0.515 Sum_probs=207.2
Q ss_pred hhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEEEE
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGYV 121 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~yv 121 (643)
+++++|++|.|+++.+++|+|++|++||+++++|||||||||+||+|.++.+|++|+|++||+++.. .++|+.||||
T Consensus 1 MI~~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYv 80 (309)
T COG1125 1 MIEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYV 80 (309)
T ss_pred CceeeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhh
Confidence 3568899999999999999999999999999999999999999999999999999999999999854 5789999999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCE
Q 006505 122 TQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKV 201 (643)
Q Consensus 122 ~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~i 201 (643)
-|...|||++||.||+.+-..+. ++++++.+++++++|+.+||+... ..+++|++|||||+|||.+||||+.+|++
T Consensus 81 iQqigLFPh~Tv~eNIa~VP~L~-~w~k~~i~~r~~ELl~lvgL~p~~---~~~RyP~eLSGGQQQRVGv~RALAadP~i 156 (309)
T COG1125 81 IQQIGLFPHLTVAENIATVPKLL-GWDKERIKKRADELLDLVGLDPSE---YADRYPHELSGGQQQRVGVARALAADPPI 156 (309)
T ss_pred hhhcccCCCccHHHHHHhhhhhc-CCCHHHHHHHHHHHHHHhCCCHHH---HhhcCchhcCcchhhHHHHHHHHhcCCCe
Confidence 99999999999999999877664 568888999999999999997522 23679999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 202 LILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 202 lllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
+|+|||+++|||.++.++.+.++++.++.|+|||++|||.+ |+.+++|||.+|++|+++..++|+++..
T Consensus 157 lLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid-EA~kLadri~vm~~G~i~Q~~~P~~il~ 225 (309)
T COG1125 157 LLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID-EALKLADRIAVMDAGEIVQYDTPDEILA 225 (309)
T ss_pred EeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHH-HHHhhhceEEEecCCeEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999999997 7999999999999999999999999863
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-52 Score=409.94 Aligned_cols=224 Identities=36% Similarity=0.547 Sum_probs=208.7
Q ss_pred hhhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc------hhhcc
Q 006505 43 EELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK------AQFRK 116 (643)
Q Consensus 43 ~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~------~~~~~ 116 (643)
.++++++++++++|++.|++|||++|++||+++|+||||||||||||+|.|+++|++|+|.++|+++.. .+.++
T Consensus 6 ~~~I~vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~ 85 (263)
T COG1127 6 EPLIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRK 85 (263)
T ss_pred cceEEEeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHh
Confidence 356889999999999999999999999999999999999999999999999999999999999998743 25688
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHh
Q 006505 117 VSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVI 196 (643)
Q Consensus 117 ~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~ 196 (643)
++|+++|+..||..+||+||+.|..+-....+++..++.+..-|+.+||.... .+.+|.+||||||||++||||++
T Consensus 86 r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~----~~~~PsELSGGM~KRvaLARAia 161 (263)
T COG1127 86 RMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAA----ADLYPSELSGGMRKRVALARAIA 161 (263)
T ss_pred heeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhh----hhhCchhhcchHHHHHHHHHHHh
Confidence 99999999999999999999999887666668888899999999999998652 25589999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 197 HDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 197 ~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
.+|+++++||||+||||.++..+-++++++.++.|.|++++|||.+ +++.++|++++|.+|+++..|+++++.+
T Consensus 162 ldPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~-s~~~i~Drv~~L~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 162 LDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLD-SLLTIADRVAVLADGKVIAEGTPEELLA 235 (263)
T ss_pred cCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChH-HHHhhhceEEEEeCCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999999999999999999998 5999999999999999999999999853
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-53 Score=424.00 Aligned_cols=218 Identities=33% Similarity=0.513 Sum_probs=203.4
Q ss_pred hhcccccccccc-----cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc------hhh
Q 006505 46 SKLEEAADSDGV-----RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK------AQF 114 (643)
Q Consensus 46 ~~~~~~~~~~~~-----~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~------~~~ 114 (643)
+++++++|.|.. ..+|+|||++|++||+++|+|+||||||||+|+|.++.+|++|+|.+||+++.. ...
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 567788888875 479999999999999999999999999999999999999999999999987743 457
Q ss_pred cccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHH
Q 006505 115 RKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFD 194 (643)
Q Consensus 115 ~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~a 194 (643)
|++||+++|+..|+...||.||+.|+.++.. .++++.++++.++|+.+||++.+ +.+|.+|||||||||+||||
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag-~~k~ei~~RV~elLelVgL~dk~-----~~yP~qLSGGQKQRVaIARA 155 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAG-VPKAEIKQRVAELLELVGLSDKA-----DRYPAQLSGGQKQRVAIARA 155 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcC-CCHHHHHHHHHHHHHHcCChhhh-----ccCchhcCcchhhHHHHHHH
Confidence 8899999999999999999999999998864 67899999999999999999877 55899999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 195 VIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 195 L~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
|+.+|+|||+|||||+|||.+...|+++|+++.++.|.||+++||+++. +.++||||.+|++|++++.|+..++.
T Consensus 156 La~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~V-vk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 156 LANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEV-VKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred HhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHH-HHHHhhhheEeeCCEEEEeccHHHhh
Confidence 9999999999999999999999999999999999999999999999984 88999999999999999999998874
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-51 Score=428.62 Aligned_cols=223 Identities=39% Similarity=0.643 Sum_probs=204.3
Q ss_pred hhccccccccc-ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc--hhhcccEEEEc
Q 006505 46 SKLEEAADSDG-VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK--AQFRKVSGYVT 122 (643)
Q Consensus 46 ~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~--~~~~~~i~yv~ 122 (643)
+.+++++++|+ .+.+|+||||++++||++|++||||||||||+|+|+|+.+|++|+|.++|.+... .+.++++||+|
T Consensus 5 i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~ 84 (293)
T COG1131 5 IEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVP 84 (293)
T ss_pred eeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEc
Confidence 45789999999 6999999999999999999999999999999999999999999999999998754 56788999999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEE
Q 006505 123 QRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVL 202 (643)
Q Consensus 123 Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~il 202 (643)
|++.+++.+||+|||.|.+.++... .+..+++++++++.+||.+.. ++++++||+|||||++||+||+++|+++
T Consensus 85 ~~~~~~~~lT~~e~l~~~~~l~~~~-~~~~~~~~~~~l~~~~L~~~~-----~~~~~~lS~G~kqrl~ia~aL~~~P~ll 158 (293)
T COG1131 85 QEPSLYPELTVRENLEFFARLYGLS-KEEAEERIEELLELFGLEDKA-----NKKVRTLSGGMKQRLSIALALLHDPELL 158 (293)
T ss_pred cCCCCCccccHHHHHHHHHHHhCCC-hhHHHHHHHHHHHHcCCchhh-----CcchhhcCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999999999999999987543 255677899999999998744 4467899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHHHHHH
Q 006505 203 ILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSVSLRM 275 (643)
Q Consensus 203 llDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~ 275 (643)
||||||+||||.++.++.++|++++++.|+||++|||+++ ++.++||+|++|++|++++.|+++++...+..
T Consensus 159 iLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~-e~~~~~d~v~il~~G~~~~~g~~~~l~~~~~~ 230 (293)
T COG1131 159 ILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE-EAEELCDRVIILNDGKIIAEGTPEELKEKFGG 230 (293)
T ss_pred EECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH-HHHHhCCEEEEEeCCEEEEeCCHHHHHHhhcc
Confidence 9999999999999999999999999874489999999998 69999999999999999999999998776553
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-51 Score=416.19 Aligned_cols=220 Identities=32% Similarity=0.519 Sum_probs=200.4
Q ss_pred hhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEEEE
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGYV 121 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~yv 121 (643)
+++++|++.+|+++++|+|+||++++||+++|+||||||||||||+|+|+++|.+|+|+++|+++.. +++.+.+|||
T Consensus 2 ~L~~~~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~v 81 (258)
T COG1120 2 MLEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYV 81 (258)
T ss_pred eeEEEEEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEe
Confidence 3568899999999999999999999999999999999999999999999999999999999998854 5678899999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcC
Q 006505 122 TQRDTLFPLLTVEETLMFSAKLRLRL---PQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHD 198 (643)
Q Consensus 122 ~Q~~~l~~~lTv~E~l~~~~~~~~~~---~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~ 198 (643)
||.....+.+||+|-+.++...+... ..+++++.+++.|+.+|+.+.+++ .+.+|||||||||.||+||+++
T Consensus 82 pQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r-----~~~~LSGGerQrv~iArALaQ~ 156 (258)
T COG1120 82 PQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADR-----PVDELSGGERQRVLIARALAQE 156 (258)
T ss_pred ccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcC-----cccccChhHHHHHHHHHHHhcC
Confidence 99998888899999999875432221 345556689999999999999855 6679999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 199 PKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 199 p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
|++|+||||||.||...+.+++++++++++++|+|||+++||++. +.++||++++|++|+++..|+|+++.
T Consensus 157 ~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~-A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 157 TPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNL-AARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred CCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEEEECCeEEeecCcchhc
Confidence 999999999999999999999999999998889999999999985 88999999999999999999998765
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-52 Score=434.24 Aligned_cols=234 Identities=32% Similarity=0.511 Sum_probs=215.4
Q ss_pred hhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc-hhhcccEEEEcc
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-AQFRKVSGYVTQ 123 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~-~~~~~~i~yv~Q 123 (643)
.+++++++|.|++..+|+|+|++|++||+++++||||||||||||+|||+..|++|+|.++|++++. ...+|.+|+|+|
T Consensus 5 ~l~i~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ 84 (352)
T COG3842 5 ALEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQ 84 (352)
T ss_pred eEEEEeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeec
Confidence 4678999999999999999999999999999999999999999999999999999999999999976 456788999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEE
Q 006505 124 RDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLI 203 (643)
Q Consensus 124 ~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~ill 203 (643)
+..|||+|||+||+.|+.+++....+++.+++++++++.++|++.. ++++.+|||||||||+|||||+.+|++||
T Consensus 85 ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~-----~R~p~qLSGGQqQRVALARAL~~~P~vLL 159 (352)
T COG3842 85 SYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFA-----DRKPHQLSGGQQQRVALARALVPEPKVLL 159 (352)
T ss_pred CcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhh-----hhChhhhChHHHHHHHHHHHhhcCcchhh
Confidence 9999999999999999998655456677889999999999999977 55789999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHHHHHHcCCCCCCC
Q 006505 204 LDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSVSLRMMGLQLPMH 283 (643)
Q Consensus 204 lDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~~~p~~ 283 (643)
||||.|+||..-+.++...|+++.++.|.|.|++|||.+ |+..++|||.+|++|++...|+|+++. ..|..
T Consensus 160 LDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe-EAl~msDrI~Vm~~G~I~Q~gtP~eiY--------~~P~~ 230 (352)
T COG3842 160 LDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQE-EALAMSDRIAVMNDGRIEQVGTPEEIY--------ERPAT 230 (352)
T ss_pred hcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHhhhccceEEccCCceeecCCHHHHh--------hCcch
Confidence 999999999999999999999999999999999999997 799999999999999999999999984 34666
Q ss_pred CChhHHHHH
Q 006505 284 VNVVEFAIE 292 (643)
Q Consensus 284 ~n~ad~~~~ 292 (643)
.-.|||+-+
T Consensus 231 ~fVA~FiG~ 239 (352)
T COG3842 231 RFVADFIGE 239 (352)
T ss_pred HHHHHHhCc
Confidence 666777643
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-51 Score=427.65 Aligned_cols=219 Identities=32% Similarity=0.515 Sum_probs=206.0
Q ss_pred hhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc-hhhcccEEEEccC
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-AQFRKVSGYVTQR 124 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~-~~~~~~i~yv~Q~ 124 (643)
++++|+.|.||+..+|+|+|+++++||+++|+||||||||||||+|||+.+|++|+|.++|++++. ...+|.+++|+|+
T Consensus 4 i~l~~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~ 83 (338)
T COG3839 4 LELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQN 83 (338)
T ss_pred EEEeeeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCC
Confidence 568999999998779999999999999999999999999999999999999999999999999976 4456889999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 006505 125 DTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLIL 204 (643)
Q Consensus 125 ~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illl 204 (643)
..|||+|||+||+.|+.+.+ +.++++.+++|+++.+.|+|++..| ++|++|||||||||+|||||+++|+++||
T Consensus 84 yALyPhmtV~~Niaf~Lk~~-~~~k~ei~~rV~eva~~L~l~~lL~-----r~P~~LSGGQrQRVAlaRAlVr~P~v~L~ 157 (338)
T COG3839 84 YALYPHMTVYENIAFGLKLR-GVPKAEIDKRVKEVAKLLGLEHLLN-----RKPLQLSGGQRQRVALARALVRKPKVFLL 157 (338)
T ss_pred ccccCCCcHHHHhhhhhhhC-CCchHHHHHHHHHHHHHcCChhHHh-----cCcccCChhhHHHHHHHHHHhcCCCEEEe
Confidence 99999999999999999876 3478889999999999999999984 47899999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 205 DEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 205 DEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
|||.|+||+..+..+...|+++.++.|.|+|.+|||.. |+..++|||.+|++|++...|+|.++.+
T Consensus 158 DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~-EAmtladri~Vm~~G~i~Q~g~p~ely~ 223 (338)
T COG3839 158 DEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQV-EAMTLADRIVVMNDGRIQQVGTPLELYE 223 (338)
T ss_pred cCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHH-HHHhhCCEEEEEeCCeeeecCChHHHhh
Confidence 99999999999999999999999989999999999986 7999999999999999999999999854
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-51 Score=403.88 Aligned_cols=205 Identities=35% Similarity=0.532 Sum_probs=190.7
Q ss_pred hhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEccC
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQR 124 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~ 124 (643)
.+.++++.+.|+...+|+|+|++|++||+++|+||||||||||||+|+|+.+|++|+|.++|+++ ......++||+|+
T Consensus 3 ~l~i~~v~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v--~~p~~~~~~vFQ~ 80 (248)
T COG1116 3 LLEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPV--TGPGPDIGYVFQE 80 (248)
T ss_pred eEEEEeeEEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccc--CCCCCCEEEEecc
Confidence 35688999999999999999999999999999999999999999999999999999999999988 3346779999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 006505 125 DTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLIL 204 (643)
Q Consensus 125 ~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illl 204 (643)
+.|+|.+||+||+.++...+. .++++.+++++++|+.+||.+.. +.+|++|||||||||+|||||+.+|++|+|
T Consensus 81 ~~LlPW~Tv~~NV~l~l~~~~-~~~~e~~~~a~~~L~~VgL~~~~-----~~~P~qLSGGMrQRVaiARAL~~~P~lLLl 154 (248)
T COG1116 81 DALLPWLTVLDNVALGLELRG-KSKAEARERAKELLELVGLAGFE-----DKYPHQLSGGMRQRVAIARALATRPKLLLL 154 (248)
T ss_pred CcccchhhHHhhheehhhccc-cchHhHHHHHHHHHHHcCCcchh-----hcCccccChHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999999987653 45677778999999999999887 558999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCC
Q 006505 205 DEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANG 258 (643)
Q Consensus 205 DEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 258 (643)
|||+++||+.|+.++.+.|.++.++.++||+++|||.+ |+..++|||++|.++
T Consensus 155 DEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~-EAv~LsdRivvl~~~ 207 (248)
T COG1116 155 DEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVD-EAVYLADRVVVLSNR 207 (248)
T ss_pred cCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHhhhCEEEEecCC
Confidence 99999999999999999999999988999999999998 688999999999984
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-50 Score=398.79 Aligned_cols=207 Identities=33% Similarity=0.600 Sum_probs=183.8
Q ss_pred hcccccccccc----cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc------hhh-c
Q 006505 47 KLEEAADSDGV----RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK------AQF-R 115 (643)
Q Consensus 47 ~~~~~~~~~~~----~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~------~~~-~ 115 (643)
+++++.+.|+. ..+|+++|++|++||+++|+|||||||||||++|+|+.+|++|+|.++|+++.. ..+ +
T Consensus 3 ~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~ 82 (226)
T COG1136 3 ELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRR 82 (226)
T ss_pred EEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHH
Confidence 46677776654 379999999999999999999999999999999999999999999999988743 223 4
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHH
Q 006505 116 KVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDV 195 (643)
Q Consensus 116 ~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL 195 (643)
+.+|||+|+..|+|.+||.||+.+++.+... +..+.+++++++++.+||.+..+ +.+|.+|||||||||+|||||
T Consensus 83 ~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~-~~~~~~~~~~~l~~~lgl~~~~~----~~~p~eLSGGqqQRVAIARAL 157 (226)
T COG1136 83 KKIGFVFQNFNLLPDLTVLENVELPLLIAGK-SAGRRKRAAEELLEVLGLEDRLL----KKKPSELSGGQQQRVAIARAL 157 (226)
T ss_pred HhEEEECccCCCCCCCCHHHHHHhHHHHcCC-ChhHHHHHHHHHHHhcCChhhhc----cCCchhcCHHHHHHHHHHHHH
Confidence 6799999999999999999999998766532 33356778999999999987653 247899999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeE
Q 006505 196 IHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSV 260 (643)
Q Consensus 196 ~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 260 (643)
+.+|++++.||||.+||+.++.+++++|++++++.|+|||++|||+. +.+.|||++.|.+|++
T Consensus 158 ~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~--lA~~~dr~i~l~dG~~ 220 (226)
T COG1136 158 INNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPE--LAKYADRVIELKDGKI 220 (226)
T ss_pred hcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHH--HHHhCCEEEEEeCCee
Confidence 99999999999999999999999999999999888999999999984 7889999999999994
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-50 Score=395.35 Aligned_cols=222 Identities=31% Similarity=0.500 Sum_probs=201.2
Q ss_pred hhhcccccccc-cccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc------hhhccc
Q 006505 45 LSKLEEAADSD-GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK------AQFRKV 117 (643)
Q Consensus 45 ~~~~~~~~~~~-~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~------~~~~~~ 117 (643)
+++++|+++.| +++++|+|||++|++||+++|+||||||||||||+|+|+.+|++|+|.+||.++.. +++|++
T Consensus 3 ~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~ 82 (258)
T COG3638 3 MIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRD 82 (258)
T ss_pred eEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHh
Confidence 46789999999 89999999999999999999999999999999999999999999999999987743 467889
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHH
Q 006505 118 SGYVTQRDTLFPLLTVEETLMFSAKLRL-------RLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVS 190 (643)
Q Consensus 118 i~yv~Q~~~l~~~lTv~E~l~~~~~~~~-------~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ 190 (643)
+||++|+..|.+.+||.||+..+..-+. +...++.++++-+.|+++|+.+.+.++ ..+|||||+|||+
T Consensus 83 iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qr-----a~~LSGGQQQRVa 157 (258)
T COG3638 83 IGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQR-----ASTLSGGQQQRVA 157 (258)
T ss_pred ceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHH-----hccCCcchhHHHH
Confidence 9999999999999999999987643221 223355677888999999999888664 4699999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 191 IGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 191 ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
|||||+++|+++|.|||+++|||.++.++|+.|++++++.|.|||++.||.+. +.++||||+-|++|+++|+||++++.
T Consensus 158 IARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdl-A~~Y~~Riigl~~G~ivfDg~~~el~ 236 (258)
T COG3638 158 IARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDL-AKKYADRIIGLKAGRIVFDGPASELT 236 (258)
T ss_pred HHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHH-HHHHHhhheEecCCcEEEeCChhhhh
Confidence 99999999999999999999999999999999999999999999999999986 88999999999999999999999876
Q ss_pred HH
Q 006505 271 VS 272 (643)
Q Consensus 271 ~~ 272 (643)
+.
T Consensus 237 ~~ 238 (258)
T COG3638 237 DE 238 (258)
T ss_pred HH
Confidence 54
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-50 Score=384.15 Aligned_cols=220 Identities=31% Similarity=0.530 Sum_probs=204.2
Q ss_pred hhhcccccccccccc-eeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc--hhhcccEEEE
Q 006505 45 LSKLEEAADSDGVRR-VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK--AQFRKVSGYV 121 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~-iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~--~~~~~~i~yv 121 (643)
++.+.+++|+|+.++ +++||||+++.||+++|+|||||||||+||+|++++.|++|+|++||.+..+ ...|+++|.+
T Consensus 1 Ml~v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl 80 (245)
T COG4555 1 MLEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVL 80 (245)
T ss_pred CeeeeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhccee
Confidence 356788999999987 9999999999999999999999999999999999999999999999998743 5689999999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCE
Q 006505 122 TQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKV 201 (643)
Q Consensus 122 ~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~i 201 (643)
+.+..++..||++|||.|.+++. +....+.+++++++.+.|+|.++.|+++| ++|.|+||||+|||||+++|++
T Consensus 81 ~~e~glY~RlT~rEnl~~Fa~L~-~l~~~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~kqkV~iARAlvh~P~i 154 (245)
T COG4555 81 FGERGLYARLTARENLKYFARLN-GLSRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMKQKVAIARALVHDPSI 154 (245)
T ss_pred cCCcChhhhhhHHHHHHHHHHHh-hhhhhHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhHHHHHHHHHHhcCCCe
Confidence 98889999999999999999886 45677888999999999999999988665 9999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHHH
Q 006505 202 LILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSVS 272 (643)
Q Consensus 202 lllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~ 272 (643)
++|||||||||..+...+.+.++++.++ |++||++||.++ |+..+||+|++|++|++++.|+++++...
T Consensus 155 ~vlDEP~sGLDi~~~r~~~dfi~q~k~e-gr~viFSSH~m~-EvealCDrvivlh~Gevv~~gs~~~l~~r 223 (245)
T COG4555 155 LVLDEPTSGLDIRTRRKFHDFIKQLKNE-GRAVIFSSHIMQ-EVEALCDRVIVLHKGEVVLEGSIEALDAR 223 (245)
T ss_pred EEEcCCCCCccHHHHHHHHHHHHHhhcC-CcEEEEecccHH-HHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence 9999999999999999999999999875 999999999997 79999999999999999999999887654
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-50 Score=405.76 Aligned_cols=220 Identities=32% Similarity=0.528 Sum_probs=203.7
Q ss_pred hhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCC---cCCc-hhhcccEEEE
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGS---PIDK-AQFRKVSGYV 121 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~---~~~~-~~~~~~i~yv 121 (643)
+.++++++.++...+++|||++|+.||++|++|||||||||||++|||+..|+.|.|.+||+ +.+. ..-.++||||
T Consensus 3 i~i~~~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfv 82 (345)
T COG1118 3 IRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFV 82 (345)
T ss_pred eeehhhhhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEE
Confidence 56788899999999999999999999999999999999999999999999999999999999 5544 2335789999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCC
Q 006505 122 TQRDTLFPLLTVEETLMFSAKLRLR-LPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPK 200 (643)
Q Consensus 122 ~Q~~~l~~~lTv~E~l~~~~~~~~~-~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~ 200 (643)
+|+..+|++|||.+|+.|+.+.+.. .++.+.+.+++++|+.+.|++.. +++|.+|||||||||++||||+.+|+
T Consensus 83 FQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la-----~ryP~QLSGGQrQRVALARALA~eP~ 157 (345)
T COG1118 83 FQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLA-----DRYPAQLSGGQRQRVALARALAVEPK 157 (345)
T ss_pred EechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchh-----hcCchhcChHHHHHHHHHHHhhcCCC
Confidence 9999999999999999999987632 36778889999999999999877 56899999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 201 VLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 201 illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
+||||||+++||..-+.++.+.|+++.++.|.|++++|||++ ++.+++|||++|++|+|...|+++++.+
T Consensus 158 vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e-ea~~ladrvvvl~~G~Ieqvg~p~ev~~ 227 (345)
T COG1118 158 VLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADRVVVLNQGRIEQVGPPDEVYD 227 (345)
T ss_pred eEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH-HHHhhcceEEEecCCeeeeeCCHHHHhc
Confidence 999999999999999999999999999988999999999998 7999999999999999999999999853
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-50 Score=401.82 Aligned_cols=218 Identities=30% Similarity=0.545 Sum_probs=193.0
Q ss_pred hhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEccC
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQR 124 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~ 124 (643)
+++++|++..|+++++|+|||+++++|++++|+||||||||||+|+|.|+++|.+|+|.++|++.....-+.+||||||.
T Consensus 4 ~i~v~nl~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~ 83 (254)
T COG1121 4 MIEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQK 83 (254)
T ss_pred EEEEeeeEEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcc
Confidence 46789999999976899999999999999999999999999999999999999999999999987654445789999995
Q ss_pred C---CCCCCCCHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcC
Q 006505 125 D---TLFPLLTVEETLMFSAKLRLR---LPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHD 198 (643)
Q Consensus 125 ~---~l~~~lTv~E~l~~~~~~~~~---~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~ 198 (643)
. .-|| +||+|.+..+...+.+ ...+++++.++++|+.+|+.+.+|+ .+.+|||||+|||-|||||+++
T Consensus 84 ~~~d~~fP-~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r-----~i~~LSGGQ~QRV~lARAL~~~ 157 (254)
T COG1121 84 SSVDRSFP-ITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDR-----QIGELSGGQKQRVLLARALAQN 157 (254)
T ss_pred cccCCCCC-cCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCC-----cccccCcHHHHHHHHHHHhccC
Confidence 3 4466 5999999887433322 2334457899999999999999865 5569999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 199 PKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 199 p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
|++|+|||||+|+|+.++..+.++|++++++ |+||++++||++ .+.++||+|++| ++++++.|++++..+
T Consensus 158 p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-g~tIl~vtHDL~-~v~~~~D~vi~L-n~~~~~~G~~~~~~~ 227 (254)
T COG1121 158 PDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-GKTVLMVTHDLG-LVMAYFDRVICL-NRHLIASGPPEEVLT 227 (254)
T ss_pred CCEEEecCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCcH-HhHhhCCEEEEE-cCeeEeccChhhccC
Confidence 9999999999999999999999999999987 999999999998 599999999999 578889999988754
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-48 Score=408.59 Aligned_cols=221 Identities=31% Similarity=0.489 Sum_probs=200.1
Q ss_pred hhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc--hhhcccEEEE
Q 006505 44 ELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK--AQFRKVSGYV 121 (643)
Q Consensus 44 ~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~--~~~~~~i~yv 121 (643)
.++++++++++|+++.+|+|||+++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++.. ...++.+||+
T Consensus 6 ~~i~i~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v 85 (306)
T PRK13537 6 APIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVV 85 (306)
T ss_pred ceEEEEeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEE
Confidence 45789999999999999999999999999999999999999999999999999999999999998753 3467889999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCE
Q 006505 122 TQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKV 201 (643)
Q Consensus 122 ~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~i 201 (643)
||++.+++.+||+||+.+.+.++ +.+.++.+++++++++.++|.+..++ .+++||||||||++||+||+++|++
T Consensus 86 ~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrl~la~aL~~~P~l 159 (306)
T PRK13537 86 PQFDNLDPDFTVRENLLVFGRYF-GLSAAAARALVPPLLEFAKLENKADA-----KVGELSGGMKRRLTLARALVNDPDV 159 (306)
T ss_pred eccCcCCCCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCchHhcC-----chhhCCHHHHHHHHHHHHHhCCCCE
Confidence 99999999999999999876654 23445556788999999999877754 5679999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHHH
Q 006505 202 LILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSVS 272 (643)
Q Consensus 202 lllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~ 272 (643)
|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.++||+|++|++|++++.|+++++.+.
T Consensus 160 llLDEPt~gLD~~~~~~l~~~l~~l~~~-g~till~sH~l~-e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 160 LVLDEPTTGLDPQARHLMWERLRSLLAR-GKTILLTTHFME-EAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEECCCHH-HHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999999999999764 999999999997 68899999999999999999999988643
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-48 Score=414.91 Aligned_cols=218 Identities=28% Similarity=0.483 Sum_probs=198.9
Q ss_pred hhcccccccc-cccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc-hhhcccEEEEcc
Q 006505 46 SKLEEAADSD-GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-AQFRKVSGYVTQ 123 (643)
Q Consensus 46 ~~~~~~~~~~-~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~-~~~~~~i~yv~Q 123 (643)
+++++++++| +++.+|+|+|+++++||+++|+||||||||||||+|+|+.+|++|+|.++|+++.. ...++.+|||+|
T Consensus 4 l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q 83 (356)
T PRK11650 4 LKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQ 83 (356)
T ss_pred EEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeC
Confidence 5688999999 78899999999999999999999999999999999999999999999999998753 234578999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEE
Q 006505 124 RDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLI 203 (643)
Q Consensus 124 ~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~ill 203 (643)
++.+||++||+||+.|+.+.+ ..++++.+++++++++.+||++.. ++++++|||||||||+|||||+.+|++||
T Consensus 84 ~~~lfp~~tv~eNi~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~-----~~~~~~LSgGq~QRvalARAL~~~P~llL 157 (356)
T PRK11650 84 NYALYPHMSVRENMAYGLKIR-GMPKAEIEERVAEAARILELEPLL-----DRKPRELSGGQRQRVAMGRAIVREPAVFL 157 (356)
T ss_pred CccccCCCCHHHHHHhHHhhc-CCCHHHHHHHHHHHHHHcCChhHh-----hCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999999999999999987643 235566677899999999998877 44778999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 204 LDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 204 lDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
|||||++||+.++..+.+.|+++.++.|.|+|++|||++ ++.+++|++++|++|+++..|+++++.
T Consensus 158 LDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~l~D~i~vl~~G~i~~~g~~~~~~ 223 (356)
T PRK11650 158 FDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV-EAMTLADRVVVMNGGVAEQIGTPVEVY 223 (356)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEECCHHHHH
Confidence 999999999999999999999998867999999999997 689999999999999999999999874
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-48 Score=392.28 Aligned_cols=218 Identities=33% Similarity=0.537 Sum_probs=193.2
Q ss_pred hcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc------hhhcccEEE
Q 006505 47 KLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK------AQFRKVSGY 120 (643)
Q Consensus 47 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~------~~~~~~i~y 120 (643)
+++|++++|+++++|+|+|+++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++.. ..+++.++|
T Consensus 2 ~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~ 81 (235)
T cd03261 2 ELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGM 81 (235)
T ss_pred eEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEE
Confidence 46788899988899999999999999999999999999999999999999999999999988643 235678999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCC
Q 006505 121 VTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPK 200 (643)
Q Consensus 121 v~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~ 200 (643)
++|++.+++.+||+||+.+........+.++.++++.++++.+|+.+.. ++.+++|||||||||+||+||+.+|+
T Consensus 82 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~LSgG~~qrv~ia~al~~~p~ 156 (235)
T cd03261 82 LFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAE-----DLYPAELSGGMKKRVALARALALDPE 156 (235)
T ss_pred EccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhh-----cCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999998754322224455567789999999998766 44678999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 201 VLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 201 illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
+++|||||+|||+.++..+++.|++++++.|+|||++||+++ ++.+++|++++|++|++++.|+++++.
T Consensus 157 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 225 (235)
T cd03261 157 LLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLYDGKIVAEGTPEELR 225 (235)
T ss_pred EEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCEEEEEECCeEEEecCHHHHc
Confidence 999999999999999999999999998755899999999997 588899999999999999999987653
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-48 Score=413.85 Aligned_cols=220 Identities=27% Similarity=0.444 Sum_probs=201.2
Q ss_pred hhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc-hhhcccEEEEcc
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-AQFRKVSGYVTQ 123 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~-~~~~~~i~yv~Q 123 (643)
+++++|++++|+++.+|+|+|+++++||+++|+|||||||||||++|+|+.+|++|+|.++|+++.. ...++.+|||+|
T Consensus 4 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q 83 (353)
T TIGR03265 4 YLSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQ 83 (353)
T ss_pred EEEEEEEEEEeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeC
Confidence 4678999999999899999999999999999999999999999999999999999999999998753 234678999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEE
Q 006505 124 RDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLI 203 (643)
Q Consensus 124 ~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~ill 203 (643)
+..+||++||+||+.|+.+.+ +.++++.+++++++++.+||++.. ++++++|||||||||+|||||+.+|+++|
T Consensus 84 ~~~lfp~~tv~eNi~~~~~~~-~~~~~~~~~~~~~~l~~l~L~~~~-----~~~~~~LSgGq~QRvaLARaL~~~P~llL 157 (353)
T TIGR03265 84 SYALFPNLTVADNIAYGLKNR-GMGRAEVAERVAELLDLVGLPGSE-----RKYPGQLSGGQQQRVALARALATSPGLLL 157 (353)
T ss_pred CcccCCCCcHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCCchh-----hCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999999999999999987643 235566778899999999999877 44778999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 204 LDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 204 lDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
|||||++||+.++.++.+.|+++.++.|.|+|++|||++ ++.+++|++++|++|+++..|+++++.+
T Consensus 158 LDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~-ea~~l~d~i~vl~~G~i~~~g~~~~~~~ 224 (353)
T TIGR03265 158 LDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE-EALSMADRIVVMNHGVIEQVGTPQEIYR 224 (353)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999998877999999999997 6899999999999999999999988753
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-48 Score=412.56 Aligned_cols=220 Identities=25% Similarity=0.460 Sum_probs=201.3
Q ss_pred hhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc-hhhcccEEEEc
Q 006505 44 ELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-AQFRKVSGYVT 122 (643)
Q Consensus 44 ~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~-~~~~~~i~yv~ 122 (643)
+++++++++++|+++.+|+|+|+++++||+++|+||||||||||||+|+|+.+|++|+|.++|+++.. ...++.++||+
T Consensus 5 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vf 84 (351)
T PRK11432 5 NFVVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVF 84 (351)
T ss_pred cEEEEEeEEEEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEe
Confidence 35778999999998899999999999999999999999999999999999999999999999998754 23357899999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEE
Q 006505 123 QRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVL 202 (643)
Q Consensus 123 Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~il 202 (643)
|+..+||++||+||+.|+.+.+ +.++++.+++++++++.+||.+.. ++++++|||||||||+|||||+.+|++|
T Consensus 85 Q~~~lfp~~tv~eNi~~~l~~~-~~~~~~~~~~v~~~l~~~gl~~~~-----~r~~~~LSgGq~QRVaLARaL~~~P~lL 158 (351)
T PRK11432 85 QSYALFPHMSLGENVGYGLKML-GVPKEERKQRVKEALELVDLAGFE-----DRYVDQISGGQQQRVALARALILKPKVL 158 (351)
T ss_pred CCcccCCCCCHHHHHHHHHhHc-CCCHHHHHHHHHHHHHHcCCchhh-----cCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 9999999999999999987654 235566778999999999998876 4578899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 203 ILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 203 llDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
||||||+|||+.++.++.+.|+++.++.|+|+|++|||++ ++.+++|+|++|++|+++..|+++++.
T Consensus 159 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-e~~~laD~i~vm~~G~i~~~g~~~~~~ 225 (351)
T PRK11432 159 LFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS-EAFAVSDTVIVMNKGKIMQIGSPQELY 225 (351)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999998877999999999997 689999999999999999999999874
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-48 Score=409.97 Aligned_cols=218 Identities=28% Similarity=0.455 Sum_probs=196.5
Q ss_pred hhcccccccccc----cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---h---hhc
Q 006505 46 SKLEEAADSDGV----RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---A---QFR 115 (643)
Q Consensus 46 ~~~~~~~~~~~~----~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~---~~~ 115 (643)
++++|++++|+. +.+|+||||++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++.. . ..+
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 567899999852 479999999999999999999999999999999999999999999999998743 1 246
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHH
Q 006505 116 KVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDV 195 (643)
Q Consensus 116 ~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL 195 (643)
+.+||++|+..+++.+||+||+.++.... +.++++.++++.++++.+||.+.. ++++.+|||||||||+|||||
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~-~~~~~~~~~~v~e~l~~vgL~~~~-----~~~~~~LSgGqkQRV~IARAL 155 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELD-NTPKDEIKRKVTELLALVGLGDKH-----DSYPSNLSGGQKQRVAIARAL 155 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCchhh-----hCChhhCCHHHHHHHHHHHHH
Confidence 78999999999999999999999976543 235566778899999999998876 457789999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 196 IHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 196 ~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
+++|++|+|||||++||+.++..++++|++++++.|.|||++||+++ .+.++||++++|++|++++.|+++++.
T Consensus 156 ~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~-~v~~~~d~v~vl~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 156 ASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMD-VVKRICDCVAVISNGELIEQGTVSEIF 229 (343)
T ss_pred HhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999998866999999999997 588999999999999999999998874
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-48 Score=365.77 Aligned_cols=212 Identities=30% Similarity=0.512 Sum_probs=193.7
Q ss_pred hhcccccccccc-cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc------hhhcccE
Q 006505 46 SKLEEAADSDGV-RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK------AQFRKVS 118 (643)
Q Consensus 46 ~~~~~~~~~~~~-~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~------~~~~~~i 118 (643)
++.++++|+|++ +++|+||||++++||++-|+||||||||||||+|.+..+|+.|+|.+||++++. .-+|++|
T Consensus 2 I~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~I 81 (223)
T COG2884 2 IRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQI 81 (223)
T ss_pred eeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhee
Confidence 567888999965 459999999999999999999999999999999999999999999999999854 2468999
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcC
Q 006505 119 GYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHD 198 (643)
Q Consensus 119 ~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~ 198 (643)
|+|+||..|.++.||+||+.|+.+.. +.+.++.++++.++|+.+||.+.+ +..|.+|||||||||+||||++.+
T Consensus 82 GvVFQD~rLL~~~tvyeNVA~pL~v~-G~~~~~i~~rV~~~L~~VgL~~k~-----~~lP~~LSGGEQQRvaIARAiV~~ 155 (223)
T COG2884 82 GVVFQDFRLLPDRTVYENVALPLRVI-GKPPREIRRRVSEVLDLVGLKHKA-----RALPSQLSGGEQQRVAIARAIVNQ 155 (223)
T ss_pred eeEeeeccccccchHhhhhhhhhhcc-CCCHHHHHHHHHHHHHHhccchhh-----hcCccccCchHHHHHHHHHHHccC
Confidence 99999999999999999999998775 457788899999999999999877 447899999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecC
Q 006505 199 PKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGT 265 (643)
Q Consensus 199 p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 265 (643)
|++|+.||||.+|||..+.+|++++.++.+ .|.||++.|||.+. +..+-.|++.|++|+++....
T Consensus 156 P~vLlADEPTGNLDp~~s~~im~lfeeinr-~GtTVl~ATHd~~l-v~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 156 PAVLLADEPTGNLDPDLSWEIMRLFEEINR-LGTTVLMATHDLEL-VNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred CCeEeecCCCCCCChHHHHHHHHHHHHHhh-cCcEEEEEeccHHH-HHhccCcEEEEeCCEEEeccc
Confidence 999999999999999999999999999987 49999999999874 667778999999999987654
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-48 Score=380.52 Aligned_cols=219 Identities=33% Similarity=0.492 Sum_probs=196.4
Q ss_pred hhhcccccccccccc----eeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCch----hhcc
Q 006505 45 LSKLEEAADSDGVRR----VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKA----QFRK 116 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~----iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~----~~~~ 116 (643)
+++++|+++.|+.+. +|+|||+++++||.++|+|+||||||||.++|+|+.+|++|+|.++|++..+. .+++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 567899999999888 99999999999999999999999999999999999999999999999887542 4678
Q ss_pred cEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHH
Q 006505 117 VSGYVTQRD--TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFD 194 (643)
Q Consensus 117 ~i~yv~Q~~--~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~a 194 (643)
.+.+||||+ .+.|..||++.|.-+.+.. +.++ .++++.++++.+||.+.. .+++|.+||||||||++||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~-~~~~--~~~~i~~~L~~VgL~~~~----l~R~P~eLSGGQ~QRiaIARA 155 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPH-GLSK--SQQRIAELLDQVGLPPSF----LDRRPHELSGGQRQRIAIARA 155 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccC-CccH--HHHHHHHHHHHcCCCHHH----HhcCchhcChhHHHHHHHHHH
Confidence 899999997 5899999999998876542 2222 334599999999997532 256889999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 195 VIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 195 L~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
|+.+|++|+||||||+||+..+.+|+++|.++.+++|.|.|++|||.+. +..+||||++|++|++++.++.+++.+
T Consensus 156 L~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~-v~~~cdRi~Vm~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 156 LIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLAL-VEHMCDRIAVMDNGQIVEIGPTEELLS 231 (252)
T ss_pred hccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHH-HHHHhhheeeeeCCeEEEeechhhhhc
Confidence 9999999999999999999999999999999999999999999999985 889999999999999999999988764
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-47 Score=413.45 Aligned_cols=222 Identities=29% Similarity=0.473 Sum_probs=201.5
Q ss_pred hhhhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc-hhhcccEEE
Q 006505 42 QEELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-AQFRKVSGY 120 (643)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~-~~~~~~i~y 120 (643)
..++++++|++++|+++++|+|+|+++++||+++|+|||||||||||++|+|+.+|++|+|.++|+++.. ...++.++|
T Consensus 11 ~~~~L~l~~l~~~~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~ 90 (375)
T PRK09452 11 LSPLVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNT 90 (375)
T ss_pred CCceEEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 3446789999999998899999999999999999999999999999999999999999999999998753 234578999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCC
Q 006505 121 VTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPK 200 (643)
Q Consensus 121 v~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~ 200 (643)
|+|++.+||++||+||+.|+.+.+ ..++++.+++++++++.+||++..+ +++.+|||||||||+|||||+.+|+
T Consensus 91 vfQ~~~lfp~ltv~eNi~~~l~~~-~~~~~~~~~~~~~~l~~~~l~~~~~-----~~p~~LSgGq~QRVaLARaL~~~P~ 164 (375)
T PRK09452 91 VFQSYALFPHMTVFENVAFGLRMQ-KTPAAEITPRVMEALRMVQLEEFAQ-----RKPHQLSGGQQQRVAIARAVVNKPK 164 (375)
T ss_pred EecCcccCCCCCHHHHHHHHHhhc-CCCHHHHHHHHHHHHHHcCCchhhh-----CChhhCCHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999987543 2345566778999999999988774 4678999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 201 VLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 201 illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
+|||||||+|||+.++..+.+.|++++++.|.|+|++|||++ ++.+++|+|++|++|+++..|+++++.
T Consensus 165 llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~-ea~~laDri~vl~~G~i~~~g~~~~i~ 233 (375)
T PRK09452 165 VLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE-EALTMSDRIVVMRDGRIEQDGTPREIY 233 (375)
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999998877999999999997 689999999999999999999998874
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-48 Score=369.77 Aligned_cols=220 Identities=28% Similarity=0.513 Sum_probs=201.2
Q ss_pred hhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc----hhhcccEEE
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK----AQFRKVSGY 120 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~----~~~~~~i~y 120 (643)
.+.++++.|+|+++++++|||+++++||+++++|||||||||.+.++.|+.+|++|+|.+||.+++. .+.|..+||
T Consensus 4 ~L~a~~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigY 83 (243)
T COG1137 4 TLVAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGY 83 (243)
T ss_pred EEEehhhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCccc
Confidence 3567899999999999999999999999999999999999999999999999999999999999976 234566899
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCC
Q 006505 121 VTQRDTLFPLLTVEETLMFSAKLRLRL-PQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDP 199 (643)
Q Consensus 121 v~Q~~~l~~~lTv~E~l~~~~~~~~~~-~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p 199 (643)
+||++..|..|||+||+....+.+... .+.+.+.+++++|++|++.|++++ +...||||||+|+.|||||+.+|
T Consensus 84 LpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~-----~a~sLSGGERRR~EIARaLa~~P 158 (243)
T COG1137 84 LPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDS-----KAYSLSGGERRRVEIARALAANP 158 (243)
T ss_pred ccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcC-----cccccccchHHHHHHHHHHhcCC
Confidence 999999999999999999888876533 334556678999999999999854 66799999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 200 KVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 200 ~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
+.++||||++|.||.+..+|.++++.+++. |..|++|-|+.. |...++||.+++++|+++.+|+++++.+
T Consensus 159 ~fiLLDEPFAGVDPiaV~dIq~iI~~L~~r-giGvLITDHNVR-EtL~i~dRaYIi~~G~vla~G~p~ei~~ 228 (243)
T COG1137 159 KFILLDEPFAGVDPIAVIDIQRIIKHLKDR-GIGVLITDHNVR-ETLDICDRAYIISDGKVLAEGSPEEIVN 228 (243)
T ss_pred CEEEecCCccCCCchhHHHHHHHHHHHHhC-CceEEEccccHH-HHHhhhheEEEEecCeEEecCCHHHHhc
Confidence 999999999999999999999999999875 999999999998 6899999999999999999999999863
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-47 Score=408.36 Aligned_cols=219 Identities=26% Similarity=0.443 Sum_probs=199.5
Q ss_pred hhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCc--cEEEECCCcCCc-hhhcccEEEEc
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQS--GSTFVNGSPIDK-AQFRKVSGYVT 122 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~--G~I~~~g~~~~~-~~~~~~i~yv~ 122 (643)
+++++++++|+.+.+|+|+|+++++||+++|+|||||||||||++|+|+.+|++ |+|.++|+++.. ...++.++||+
T Consensus 6 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vf 85 (362)
T TIGR03258 6 IRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLF 85 (362)
T ss_pred EEEEEEEEEECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEE
Confidence 568899999998899999999999999999999999999999999999999999 999999998753 23457899999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEE
Q 006505 123 QRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVL 202 (643)
Q Consensus 123 Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~il 202 (643)
|+..+||++||+||+.|+.+.+ +.++++.+++++++++.+||++.. ++++++|||||||||+|||||+.+|++|
T Consensus 86 Q~~~l~p~~tv~enl~~~l~~~-~~~~~~~~~~v~~~l~~~gL~~~~-----~~~~~~LSgGq~QRvaLARAL~~~P~ll 159 (362)
T TIGR03258 86 QNYALFPHLKVEDNVAFGLRAQ-KMPKADIAERVADALKLVGLGDAA-----AHLPAQLSGGMQQRIAIARAIAIEPDVL 159 (362)
T ss_pred CCcccCCCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhcCCCchh-----hCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999999999999987644 235566677899999999998877 4477899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 203 ILDEPTSGLDSTSALQIIDMLKVMAETR-GRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 203 llDEPtsgLD~~~~~~i~~~L~~l~~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
||||||+|||+.++.++.+.|+++.++. |+|+|++|||++ ++..++|+|++|++|+++..|+++++.+
T Consensus 160 LLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~-ea~~l~dri~vl~~G~i~~~g~~~~~~~ 228 (362)
T TIGR03258 160 LLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQD-DALTLADKAGIMKDGRLAAHGEPQALYD 228 (362)
T ss_pred EEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999998765 899999999997 6899999999999999999999998753
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-47 Score=407.50 Aligned_cols=219 Identities=26% Similarity=0.455 Sum_probs=198.2
Q ss_pred hhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc-hhhcccEEEEccC
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-AQFRKVSGYVTQR 124 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~-~~~~~~i~yv~Q~ 124 (643)
+++++++++|+++.+|+|+|+++++||+++|+||||||||||||+|+|+.+|++|+|.++|+++.. ...++.++||+|+
T Consensus 3 L~i~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~ 82 (353)
T PRK10851 3 IEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQH 82 (353)
T ss_pred EEEEEEEEEeCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEecC
Confidence 467899999998899999999999999999999999999999999999999999999999998753 2345679999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCE
Q 006505 125 DTLFPLLTVEETLMFSAKLRL---RLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKV 201 (643)
Q Consensus 125 ~~l~~~lTv~E~l~~~~~~~~---~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~i 201 (643)
+.++|++||+||+.|+..... ..++++.+++++++++.++|++.. ++++.+|||||||||+|||||+.+|++
T Consensus 83 ~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-----~~~~~~LSgGq~QRvalArAL~~~P~l 157 (353)
T PRK10851 83 YALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLA-----DRYPAQLSGGQKQRVALARALAVEPQI 157 (353)
T ss_pred cccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhh-----hCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999865421 224556677899999999998776 457789999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 202 LILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 202 lllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
|||||||+|||+.++.++.+.|++++++.|+|+|++|||++ ++.+++|+|++|++|++++.|+++++.
T Consensus 158 lLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~-ea~~~~Dri~vl~~G~i~~~g~~~~i~ 225 (353)
T PRK10851 158 LLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE-EAMEVADRVVVMSQGNIEQAGTPDQVW 225 (353)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999998867999999999997 689999999999999999999998874
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-47 Score=359.19 Aligned_cols=216 Identities=28% Similarity=0.466 Sum_probs=193.9
Q ss_pred hhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc-hhhcccEEEEccC
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-AQFRKVSGYVTQR 124 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~-~~~~~~i~yv~Q~ 124 (643)
+.++++..+|+..+ =.++++|++||++||+||||||||||||+|+|...|.+|+|.+||++.+. ....+-+++++|+
T Consensus 2 l~L~~V~~~y~~~~--~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQE 79 (231)
T COG3840 2 LALDDVRFSYGHLP--MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQE 79 (231)
T ss_pred ccccceEEeeCcce--EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhc
Confidence 45667777777554 36889999999999999999999999999999999999999999999865 3456779999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 006505 125 DTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLIL 204 (643)
Q Consensus 125 ~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illl 204 (643)
..+|.+|||.+|+.++....+.. .++.+++++.++..+||..+. ++.|.+|||||||||++||+|+.+-+|++|
T Consensus 80 nNLFaHLtV~qNigLGl~P~LkL-~a~~r~~v~~aa~~vGl~~~~-----~RLP~~LSGGqRQRvALARclvR~~PilLL 153 (231)
T COG3840 80 NNLFAHLTVAQNIGLGLSPGLKL-NAEQREKVEAAAAQVGLAGFL-----KRLPGELSGGQRQRVALARCLVREQPILLL 153 (231)
T ss_pred cccchhhhhhhhhcccCCccccc-CHHHHHHHHHHHHHhChhhHh-----hhCccccCchHHHHHHHHHHHhccCCeEEe
Confidence 99999999999999886544333 355678899999999999887 447889999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 205 DEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 205 DEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
|||+|+|||.-+.++..++.+++++++.|++++||+|+ ++..++|+++++++|+|.+.|+.++..
T Consensus 154 DEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl~~Gri~~~g~~~~~~ 218 (231)
T COG3840 154 DEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDNGRIAAQGSTQELL 218 (231)
T ss_pred cCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEEeCCEEEeeccHHHHh
Confidence 99999999999999999999999999999999999998 699999999999999999999988764
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-47 Score=403.85 Aligned_cols=221 Identities=30% Similarity=0.466 Sum_probs=199.6
Q ss_pred hhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc--hhhcccEEEE
Q 006505 44 ELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK--AQFRKVSGYV 121 (643)
Q Consensus 44 ~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~--~~~~~~i~yv 121 (643)
.+++++|++++|+++.+|+||||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. ...++.+||+
T Consensus 40 ~~i~i~nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v 119 (340)
T PRK13536 40 VAIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVV 119 (340)
T ss_pred eeEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEE
Confidence 46889999999999999999999999999999999999999999999999999999999999998743 3467789999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCE
Q 006505 122 TQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKV 201 (643)
Q Consensus 122 ~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~i 201 (643)
||++.+++.+||+||+.+....+ +.+.++.+++++++++.++|.+..++ ++++||||||||++||+||+++|++
T Consensus 120 ~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~ll~~~~L~~~~~~-----~~~~LS~G~kqrv~lA~aL~~~P~l 193 (340)
T PRK13536 120 PQFDNLDLEFTVRENLLVFGRYF-GMSTREIEAVIPSLLEFARLESKADA-----RVSDLSGGMKRRLTLARALINDPQL 193 (340)
T ss_pred eCCccCCCCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCchhhCC-----ChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999766544 23444556678899999999877644 5679999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHHH
Q 006505 202 LILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSVS 272 (643)
Q Consensus 202 lllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~ 272 (643)
+||||||+|||+.++.++.+.|++++++ |+|||++||+++ ++.++||+|++|++|++++.|+++++.+.
T Consensus 194 LiLDEPt~gLD~~~r~~l~~~l~~l~~~-g~tilisSH~l~-e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 194 LILDEPTTGLDPHARHLIWERLRSLLAR-GKTILLTTHFME-EAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 9999999999999999999999999874 999999999997 68899999999999999999999988653
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-48 Score=369.15 Aligned_cols=232 Identities=24% Similarity=0.405 Sum_probs=204.7
Q ss_pred hhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCC-----ccEEEECCCcCCc-----hhh
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQ-----SGSTFVNGSPIDK-----AQF 114 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~-----~G~I~~~g~~~~~-----~~~ 114 (643)
..+++++...||.+.+|+|||+.|++++++|+|||||||||||||++....... +|+|.++|+++.. .++
T Consensus 7 ~~~~~~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~l 86 (253)
T COG1117 7 AIEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVEL 86 (253)
T ss_pred eeEecceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHH
Confidence 467889999999999999999999999999999999999999999999987654 7999999998843 468
Q ss_pred cccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHH
Q 006505 115 RKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFD 194 (643)
Q Consensus 115 ~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~a 194 (643)
|+++|+|+|.+.-|| +|++||+.|+.++..-.+ ++.++.|+..|+...|.+....+. ++...+||||||||++||||
T Consensus 87 Rr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~-~~ldeiVe~sLk~AaLWdEVKDrL-~~sa~~LSGGQQQRLcIARa 163 (253)
T COG1117 87 RRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKD-KELDEIVESSLKKAALWDEVKDRL-HKSALGLSGGQQQRLCIARA 163 (253)
T ss_pred HHHheeeccCCCCCC-chHHHHHHHhHHhhccch-HHHHHHHHHHHHHhHhHHHhHHHh-hCCccCCChhHHHHHHHHHH
Confidence 999999999999999 799999999998764334 778889999999999864432222 56778999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHHHHH
Q 006505 195 VIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSVSLR 274 (643)
Q Consensus 195 L~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~ 274 (643)
|+.+|+|||||||||+|||.+..+|-+++.++++ .-|||++||.+. .+.+..|+..++..|+++++|+.+++.
T Consensus 164 lAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~--~yTIviVTHnmq-QAaRvSD~taFf~~G~LvE~g~T~~iF---- 236 (253)
T COG1117 164 LAVKPEVLLMDEPTSALDPISTLKIEELITELKK--KYTIVIVTHNMQ-QAARVSDYTAFFYLGELVEFGPTDKIF---- 236 (253)
T ss_pred HhcCCcEEEecCcccccCchhHHHHHHHHHHHHh--ccEEEEEeCCHH-HHHHHhHhhhhhcccEEEEEcCHHhhh----
Confidence 9999999999999999999999999999999985 689999999997 589999999999999999999998874
Q ss_pred HcCCCCCCCCChhHHH
Q 006505 275 MMGLQLPMHVNVVEFA 290 (643)
Q Consensus 275 ~~g~~~p~~~n~ad~~ 290 (643)
..|.+.-+.||+
T Consensus 237 ----~~P~~~~TedYi 248 (253)
T COG1117 237 ----TNPKHKRTEDYI 248 (253)
T ss_pred ----cCccHHHHHHHh
Confidence 346666666664
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-47 Score=407.97 Aligned_cols=222 Identities=27% Similarity=0.456 Sum_probs=201.9
Q ss_pred hhhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc-hhhcccEEEE
Q 006505 43 EELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-AQFRKVSGYV 121 (643)
Q Consensus 43 ~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~-~~~~~~i~yv 121 (643)
.+++++++++++|+++.+|+|+|+++++||+++|+||||||||||||+|+|+.+|++|+|.++|+++.. ...++.+|||
T Consensus 17 ~~~l~l~~v~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v 96 (377)
T PRK11607 17 TPLLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMM 96 (377)
T ss_pred CceEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence 346789999999998899999999999999999999999999999999999999999999999998753 3356789999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCE
Q 006505 122 TQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKV 201 (643)
Q Consensus 122 ~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~i 201 (643)
+|++.+||++||.||+.|+.+.+ ..++++.+++++++++.++|.+.. ++++.+|||||||||+|||||+.+|++
T Consensus 97 fQ~~~lfp~ltv~eNi~~~l~~~-~~~~~~~~~~v~~~l~~l~L~~~~-----~~~~~~LSgGq~QRVaLARAL~~~P~l 170 (377)
T PRK11607 97 FQSYALFPHMTVEQNIAFGLKQD-KLPKAEIASRVNEMLGLVHMQEFA-----KRKPHQLSGGQRQRVALARSLAKRPKL 170 (377)
T ss_pred eCCCccCCCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCchhh-----cCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999987643 235566778899999999998776 457889999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 202 LILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 202 lllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
|||||||++||+.++..+.+.|+++.++.|.|+|++|||++ ++..++|++++|++|+++..|+++++.+
T Consensus 171 LLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~laDri~vl~~G~i~~~g~~~~~~~ 239 (377)
T PRK11607 171 LLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAMTMAGRIAIMNRGKFVQIGEPEEIYE 239 (377)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEeCCEEEEEcCHHHHHh
Confidence 99999999999999999999999998777999999999997 6899999999999999999999998753
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-47 Score=379.24 Aligned_cols=216 Identities=31% Similarity=0.499 Sum_probs=192.2
Q ss_pred hcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc--hhhcccEEEEccC
Q 006505 47 KLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK--AQFRKVSGYVTQR 124 (643)
Q Consensus 47 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~--~~~~~~i~yv~Q~ 124 (643)
+++|++++|+++++|+|+|+++++||+++|+||||||||||+|+|+|+.+|++|+|.++|.++.. ...++.++|++|+
T Consensus 2 ~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~ 81 (220)
T cd03265 2 EVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQD 81 (220)
T ss_pred EEEEEEEEECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecCC
Confidence 46888999988899999999999999999999999999999999999999999999999987642 3456789999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 006505 125 DTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLIL 204 (643)
Q Consensus 125 ~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illl 204 (643)
+.+++.+||+||+.+....+ +...++.+++++++++.+|+++..+ .++..||||||||++||+||+.+|++++|
T Consensus 82 ~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qr~~la~al~~~p~llll 155 (220)
T cd03265 82 LSVDDELTGWENLYIHARLY-GVPGAERRERIDELLDFVGLLEAAD-----RLVKTYSGGMRRRLEIARSLVHRPEVLFL 155 (220)
T ss_pred ccccccCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCHHHhh-----CChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999999999876543 2234445667899999999987664 46789999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHH
Q 006505 205 DEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLL 269 (643)
Q Consensus 205 DEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 269 (643)
||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|+++..|+++++
T Consensus 156 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 156 DEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME-EAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred cCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 99999999999999999999998755899999999997 58889999999999999999987653
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-47 Score=382.72 Aligned_cols=221 Identities=30% Similarity=0.492 Sum_probs=199.5
Q ss_pred hhhccccccccccc-ceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCC----chhhcccEE
Q 006505 45 LSKLEEAADSDGVR-RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPID----KAQFRKVSG 119 (643)
Q Consensus 45 ~~~~~~~~~~~~~~-~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~----~~~~~~~i~ 119 (643)
++.+++++..|++. .+|+|+|+++++||.++|+|+||||||||+++|+|+++|++|+|.++|.++. ...+++.+|
T Consensus 3 ~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG 82 (235)
T COG1122 3 MIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVG 82 (235)
T ss_pred eEEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceE
Confidence 35677888888765 9999999999999999999999999999999999999999999999999865 356889999
Q ss_pred EEccCC-CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcC
Q 006505 120 YVTQRD-TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHD 198 (643)
Q Consensus 120 yv~Q~~-~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~ 198 (643)
||+|++ ..+-.-||.|.+.|+..- .+.+.++.+++++++++.+|+.+.+ ++.+..|||||||||+||.+|+.+
T Consensus 83 ~VfQnpd~q~~~~tV~~evafg~~n-~g~~~~e~~~rv~~~l~~vgl~~~~-----~r~p~~LSGGqkqRvaIA~vLa~~ 156 (235)
T COG1122 83 LVFQNPDDQLFGPTVEDEVAFGLEN-LGLPREEIEERVAEALELVGLEELL-----DRPPFNLSGGQKQRVAIAGVLAMG 156 (235)
T ss_pred EEEECcccccccCcHHHHHhhchhh-cCCCHHHHHHHHHHHHHHcCchhhc-----cCCccccCCcceeeHHhhHHHHcC
Confidence 999996 234445999999998753 4567778899999999999999887 558899999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHHH
Q 006505 199 PKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSVS 272 (643)
Q Consensus 199 p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~ 272 (643)
|++|+|||||+|||+..+.++++.++++.++.|+|||++|||.+ .+.+++|++++|++|+++++|++.++.+.
T Consensus 157 P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~-~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 157 PEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE-LVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH-HHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 99999999999999999999999999999877899999999998 58999999999999999999998877653
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-47 Score=375.65 Aligned_cols=222 Identities=28% Similarity=0.469 Sum_probs=201.8
Q ss_pred hhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc----hhhcccEE
Q 006505 44 ELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK----AQFRKVSG 119 (643)
Q Consensus 44 ~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~----~~~~~~i~ 119 (643)
+++++++++++||.-.+++|||+++++||+++|+||||||||||+|+|+|.++|++|+|.++|++++. +..|..++
T Consensus 3 ~lL~v~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~ 82 (250)
T COG0411 3 PLLEVRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIA 82 (250)
T ss_pred ceeeeccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccce
Confidence 35678999999999999999999999999999999999999999999999999999999999999865 23466789
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcC--------CC---CHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHH
Q 006505 120 YVTQRDTLFPLLTVEETLMFSAKLRL--------RL---PQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRR 188 (643)
Q Consensus 120 yv~Q~~~l~~~lTv~E~l~~~~~~~~--------~~---~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqR 188 (643)
--+|...+|++|||.||+..++..+. +. ..++..+++.++|+.+||.+.+|+ ..++||+|||||
T Consensus 83 RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~-----~A~~LsyG~qR~ 157 (250)
T COG0411 83 RTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADR-----PAGNLSYGQQRR 157 (250)
T ss_pred eecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcc-----hhhcCChhHhHH
Confidence 99999999999999999998865331 11 345667889999999999999865 556999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhH
Q 006505 189 VSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDL 268 (643)
Q Consensus 189 v~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 268 (643)
+.|||||+++|++|+||||.+||.+..+.++.+.|++++++.|.||+++.||++. ++++||||+||+.|+++.+|+|++
T Consensus 158 LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~-Vm~l~dri~Vl~~G~~IAeG~P~e 236 (250)
T COG0411 158 LEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKL-VMGLADRIVVLNYGEVIAEGTPEE 236 (250)
T ss_pred HHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHH-HhhhccEEEeccCCcCcccCCHHH
Confidence 9999999999999999999999999999999999999998778999999999985 999999999999999999999999
Q ss_pred HHH
Q 006505 269 LSV 271 (643)
Q Consensus 269 ~~~ 271 (643)
+.+
T Consensus 237 V~~ 239 (250)
T COG0411 237 VRN 239 (250)
T ss_pred Hhc
Confidence 753
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-47 Score=377.45 Aligned_cols=211 Identities=34% Similarity=0.582 Sum_probs=186.7
Q ss_pred hcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc-hhhcccEEEEccCC
Q 006505 47 KLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-AQFRKVSGYVTQRD 125 (643)
Q Consensus 47 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~-~~~~~~i~yv~Q~~ 125 (643)
++++++++|+++++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ...++.++|++|++
T Consensus 2 ~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~ 81 (213)
T cd03259 2 ELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQDY 81 (213)
T ss_pred eeeeeEEEeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCch
Confidence 46788899988899999999999999999999999999999999999999999999999998743 23456799999999
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q 006505 126 TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILD 205 (643)
Q Consensus 126 ~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlD 205 (643)
.+++.+|++||+.+..... ....+..+++++++++.+|+.+..+ +.+..||||||||++||++|+.+|++++||
T Consensus 82 ~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgG~~qrl~la~al~~~p~~lllD 155 (213)
T cd03259 82 ALFPHLTVAENIAFGLKLR-GVPKAEIRARVRELLELVGLEGLLN-----RYPHELSGGQQQRVALARALAREPSLLLLD 155 (213)
T ss_pred hhccCCcHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHcCChhhhh-----cChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 9999999999998875432 1234445567899999999987664 466799999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEec
Q 006505 206 EPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHG 264 (643)
Q Consensus 206 EPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 264 (643)
|||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|++++.|
T Consensus 156 EPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 156 EPLSALDAKLREELREELKELQRELGITTIYVTHDQE-EALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999998755899999999997 588999999999999998765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-46 Score=396.05 Aligned_cols=212 Identities=32% Similarity=0.511 Sum_probs=190.2
Q ss_pred ccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc--hhhcccEEEEccCCCCCCC
Q 006505 53 DSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK--AQFRKVSGYVTQRDTLFPL 130 (643)
Q Consensus 53 ~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~--~~~~~~i~yv~Q~~~l~~~ 130 (643)
++|+++.+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. ...++.+||++|++.+++.
T Consensus 1 k~y~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~ 80 (302)
T TIGR01188 1 KVYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDED 80 (302)
T ss_pred CeeCCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCC
Confidence 35677889999999999999999999999999999999999999999999999988743 3456789999999999999
Q ss_pred CCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q 006505 131 LTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSG 210 (643)
Q Consensus 131 lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsg 210 (643)
+||+||+.+.+..+ +.+.++.+++++++++.+||.+..+ ++++.|||||||||+||+||+.+|++|+|||||+|
T Consensus 81 ~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 154 (302)
T TIGR01188 81 LTGRENLEMMGRLY-GLPKDEAEERAEELLELFELGEAAD-----RPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTG 154 (302)
T ss_pred CcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCChhHhC-----CchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 99999999876654 2344555678899999999987764 46679999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHHH
Q 006505 211 LDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSVS 272 (643)
Q Consensus 211 LD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~ 272 (643)
||+.++..+.+.|++++++ |+|||++||+++ ++.++||++++|++|++++.|+++++.+.
T Consensus 155 LD~~~~~~l~~~l~~~~~~-g~tvi~~sH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 155 LDPRTRRAIWDYIRALKEE-GVTILLTTHYME-EADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred CCHHHHHHHHHHHHHHHhC-CCEEEEECCCHH-HHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 9999999999999999875 999999999997 58899999999999999999999887654
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-46 Score=405.26 Aligned_cols=218 Identities=29% Similarity=0.475 Sum_probs=197.2
Q ss_pred hhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc-hhhcccEEEEccC
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-AQFRKVSGYVTQR 124 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~-~~~~~~i~yv~Q~ 124 (643)
+++++++++|+++.+|+|+|+++++||+++|+||||||||||||+|+|+.+|++|+|.++|+++.. ...++.++||+|+
T Consensus 4 l~i~~l~~~~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~ 83 (369)
T PRK11000 4 VTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQS 83 (369)
T ss_pred EEEEEEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeCC
Confidence 568899999998899999999999999999999999999999999999999999999999998753 2235679999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 006505 125 DTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLIL 204 (643)
Q Consensus 125 ~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illl 204 (643)
..+++.+||+||+.|+...+ +.+.++.+++++++++.+||++.. ++++.+|||||||||+|||||+.+|++|||
T Consensus 84 ~~l~~~~tv~eni~~~~~~~-~~~~~~~~~~~~~~l~~lgL~~~~-----~~~~~~LSgGq~QRvaLAraL~~~P~lLLL 157 (369)
T PRK11000 84 YALYPHLSVAENMSFGLKLA-GAKKEEINQRVNQVAEVLQLAHLL-----DRKPKALSGGQRQRVAIGRTLVAEPSVFLL 157 (369)
T ss_pred cccCCCCCHHHHHHhHHhhc-CCCHHHHHHHHHHHHHHcCChhhh-----cCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999999999986543 234555667899999999998766 446789999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 205 DEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 205 DEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
||||+|||+.++..+.+.|++++++.|.|+|++|||++ ++.+++|++++|++|+++..|+++++.
T Consensus 158 DEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~i~vl~~G~i~~~g~~~~i~ 222 (369)
T PRK11000 158 DEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDAGRVAQVGKPLELY 222 (369)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999998766899999999997 588999999999999999999998874
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-47 Score=368.03 Aligned_cols=220 Identities=29% Similarity=0.480 Sum_probs=194.4
Q ss_pred hhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc----hhhcccEE
Q 006505 44 ELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK----AQFRKVSG 119 (643)
Q Consensus 44 ~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~----~~~~~~i~ 119 (643)
+++++++++..||..++|++||+++++||+++|+||||||||||||+|+|+.++.+|+|.++|++++. +..|..++
T Consensus 2 ~mL~v~~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~ 81 (237)
T COG0410 2 PMLEVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIA 81 (237)
T ss_pred CceeEEeEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeE
Confidence 36789999999999999999999999999999999999999999999999999999999999999964 34677899
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC-ChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcC
Q 006505 120 YVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELG-LEHVAMARVGDDRVRGISGGERRRVSIGFDVIHD 198 (643)
Q Consensus 120 yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lg-l~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~ 198 (643)
||||...+||.|||+|||..++..+.. ++..+..++++.+.|- |.+.+ ++....|||||||.++|||||+++
T Consensus 82 ~VPegR~iF~~LTVeENL~~g~~~~~~--~~~~~~~~e~v~~lFP~Lker~-----~~~aG~LSGGEQQMLAiaRALm~~ 154 (237)
T COG0410 82 YVPEGRRIFPRLTVEENLLLGAYARRD--KEAQERDLEEVYELFPRLKERR-----NQRAGTLSGGEQQMLAIARALMSR 154 (237)
T ss_pred eCcccccchhhCcHHHHHhhhhhcccc--cccccccHHHHHHHChhHHHHh-----cCcccCCChHHHHHHHHHHHHhcC
Confidence 999999999999999999988765422 1222222677777773 55555 446679999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 199 PKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 199 p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
|++|+|||||.||-|.-..+|.+.+++++++.|.||+++.++... +.+++||.++|.+|+++++|+.+++..
T Consensus 155 PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~-Al~iaDr~yvle~Griv~~G~~~eL~~ 226 (237)
T COG0410 155 PKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARF-ALEIADRGYVLENGRIVLSGTAAELLA 226 (237)
T ss_pred CCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHH-HHHhhCEEEEEeCCEEEEecCHHHHhc
Confidence 999999999999999999999999999998778999999999874 889999999999999999999998854
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-46 Score=400.88 Aligned_cols=218 Identities=28% Similarity=0.449 Sum_probs=195.0
Q ss_pred hhccccccccc----ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc------hhhc
Q 006505 46 SKLEEAADSDG----VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK------AQFR 115 (643)
Q Consensus 46 ~~~~~~~~~~~----~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~------~~~~ 115 (643)
++++|++++|+ .+++|+|+||++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++.. ..++
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 46788999997 4689999999999999999999999999999999999999999999999998743 1246
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHH
Q 006505 116 KVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDV 195 (643)
Q Consensus 116 ~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL 195 (643)
+.++||+|++.+++.+||+||+.+....+ +.++++.+++++++++.+||.+..+ +++++|||||||||+||+||
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~-----~~~~~LSgGq~qRv~lAraL 155 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELA-GTPKAEIKARVTELLELVGLSDKAD-----RYPAQLSGGQKQRVAIARAL 155 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCchhhh-----CChhhCCHHHHHHHHHHHHH
Confidence 78999999999999999999999876543 2345556678899999999987664 46789999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 196 IHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 196 ~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
+.+|++|||||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.++||++++|++|++++.|+++++.
T Consensus 156 ~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~l~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 156 ASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRICDRVAVIDAGRLVEQGTVSEVF 229 (343)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999998766899999999997 588899999999999999999988774
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-46 Score=381.64 Aligned_cols=218 Identities=28% Similarity=0.478 Sum_probs=191.8
Q ss_pred hhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc-hhhcccEEEEccC
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-AQFRKVSGYVTQR 124 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~-~~~~~~i~yv~Q~ 124 (643)
+++++++++|+++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++.. ...++.++|++|+
T Consensus 3 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~ 82 (239)
T cd03296 3 IEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQH 82 (239)
T ss_pred EEEEeEEEEECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEecC
Confidence 467899999988899999999999999999999999999999999999999999999999988743 2235679999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCE
Q 006505 125 DTLFPLLTVEETLMFSAKLRLR---LPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKV 201 (643)
Q Consensus 125 ~~l~~~lTv~E~l~~~~~~~~~---~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~i 201 (643)
+.+++.+||+||+.+....+.. ...++..++++++++.+|+.+..+ +.+.+||||||||++||+||+.+|++
T Consensus 83 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrl~la~al~~~p~l 157 (239)
T cd03296 83 YALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLAD-----RYPAQLSGGQRQRVALARALAVEPKV 157 (239)
T ss_pred CcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhh-----cChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999987543211 123344567889999999987664 46679999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHH
Q 006505 202 LILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLL 269 (643)
Q Consensus 202 lllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 269 (643)
|+|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|++++.|+++++
T Consensus 158 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 224 (239)
T cd03296 158 LLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE-EALEVADRVVVMNKGRIEQVGTPDEV 224 (239)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEecCHHHH
Confidence 99999999999999999999999998755899999999997 58889999999999999999998775
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-46 Score=400.64 Aligned_cols=211 Identities=27% Similarity=0.452 Sum_probs=191.8
Q ss_pred ccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhh----cccEEEEccCC
Q 006505 53 DSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQF----RKVSGYVTQRD 125 (643)
Q Consensus 53 ~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~----~~~i~yv~Q~~ 125 (643)
|+|+.+.+|+|+||++++||+++|+|||||||||||++|+|+.+|++|+|.++|+++.. ... ++.++||+|++
T Consensus 1 ~~~~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~ 80 (363)
T TIGR01186 1 KKTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQF 80 (363)
T ss_pred CccCCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCC
Confidence 46788889999999999999999999999999999999999999999999999998753 223 67899999999
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q 006505 126 TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILD 205 (643)
Q Consensus 126 ~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlD 205 (643)
.++|++||+||+.|..... +.++++..+++.++++.+||++.. ++++..|||||||||+|||||+.+|++||||
T Consensus 81 ~l~~~~TV~eNi~~~~~~~-~~~~~~~~~~~~~~l~~vgL~~~~-----~~~p~~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 81 ALFPHMTILQNTSLGPELL-GWPEQERKEKALELLKLVGLEEYE-----HRYPDELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred cCCCCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhcCCchhh-----hCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9999999999999987653 345666778899999999998766 4577899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 206 EPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 206 EPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
|||+|||+.++.++.+.|+++.++.|+|||++|||++ ++.+++|+|++|++|+++..|+++++.
T Consensus 155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~-ea~~~~drI~vl~~G~iv~~g~~~ei~ 218 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLD-EAIRIGDRIVIMKAGEIVQVGTPDEIL 218 (363)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 9999999999999999999998766999999999997 588999999999999999999998875
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-46 Score=394.37 Aligned_cols=219 Identities=31% Similarity=0.470 Sum_probs=195.5
Q ss_pred hhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc--hhhcccEEEEc
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK--AQFRKVSGYVT 122 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~--~~~~~~i~yv~ 122 (643)
++++++++++|+++.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ...++.+||++
T Consensus 4 ~i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 83 (303)
T TIGR01288 4 AIDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVP 83 (303)
T ss_pred EEEEEeEEEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEe
Confidence 4678999999998899999999999999999999999999999999999999999999999988643 34567899999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEE
Q 006505 123 QRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVL 202 (643)
Q Consensus 123 Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~il 202 (643)
|++.+++.+||+||+.+..... +.+.++.+++++++++.+++.+..++ .+++||||||||++||+||+.+|++|
T Consensus 84 q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~ll~~~~l~~~~~~-----~~~~LSgG~~qrv~la~al~~~p~ll 157 (303)
T TIGR01288 84 QFDNLDPEFTVRENLLVFGRYF-GMSTREIEAVIPSLLEFARLESKADV-----RVALLSGGMKRRLTLARALINDPQLL 157 (303)
T ss_pred ccccCCcCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHCCChhHhcC-----chhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999999999998755433 23344455678899999999877644 66799999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 203 ILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 203 llDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
||||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.++||++++|++|++++.|+++++.+
T Consensus 158 lLDEPt~gLD~~~~~~l~~~l~~~~~~-g~til~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 158 ILDEPTTGLDPHARHLIWERLRSLLAR-GKTILLTTHFME-EAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999874 999999999997 5889999999999999999999988754
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-46 Score=378.90 Aligned_cols=218 Identities=30% Similarity=0.476 Sum_probs=192.9
Q ss_pred hhccccccccccc----ceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc------hhhc
Q 006505 46 SKLEEAADSDGVR----RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK------AQFR 115 (643)
Q Consensus 46 ~~~~~~~~~~~~~----~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~------~~~~ 115 (643)
+++++++++|+++ ++|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ...+
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 4578899999876 89999999999999999999999999999999999999999999999998743 1236
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHH
Q 006505 116 KVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDV 195 (643)
Q Consensus 116 ~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL 195 (643)
+.++|++|++.+++.+|++||+.+....+ ....++..+.++++++.+|+.+..+ +.+..||||||||++||++|
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv~la~al 155 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIA-GVPKAEIEERVLELLELVGLEDKAD-----AYPAQLSGGQKQRVGIARAL 155 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHCCChhhhh-----cChhhCCHHHHHHHHHHHHH
Confidence 78999999999999999999998875543 2234445667899999999987664 46789999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 196 IHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 196 ~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
+.+|++++|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|++++.|+++++.
T Consensus 156 ~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (233)
T cd03258 156 ANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEME-VVKRICDRVAVMEKGEVVEEGTVEEVF 229 (233)
T ss_pred hcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 99999999999999999999999999999998755899999999997 588899999999999999999887653
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-46 Score=379.66 Aligned_cols=217 Identities=33% Similarity=0.539 Sum_probs=190.6
Q ss_pred hcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hh-hcccEEEEc
Q 006505 47 KLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQ-FRKVSGYVT 122 (643)
Q Consensus 47 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~-~~~~i~yv~ 122 (643)
++++++++|+++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. .. .++.++|++
T Consensus 2 ~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~ 81 (236)
T cd03219 2 EVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTF 81 (236)
T ss_pred eeeeeEEEECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEe
Confidence 46788889988889999999999999999999999999999999999999999999999988743 12 245699999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCC---------CHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHH
Q 006505 123 QRDTLFPLLTVEETLMFSAKLRLRL---------PQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGF 193 (643)
Q Consensus 123 Q~~~l~~~lTv~E~l~~~~~~~~~~---------~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~ 193 (643)
|++.+++.+||+||+.+........ ..++..++++++++.+|+++.. +..+++||||||||++||+
T Consensus 82 q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~LSgG~~qrv~la~ 156 (236)
T cd03219 82 QIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLA-----DRPAGELSYGQQRRLEIAR 156 (236)
T ss_pred cccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchh-----hCChhhCCHHHHHHHHHHH
Confidence 9999999999999999876432111 1344556789999999998765 4467899999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 194 DVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 194 aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
+|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.+++|++++|++|++++.|+++++.
T Consensus 157 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~vsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (236)
T cd03219 157 ALATDPKLLLLDEPAAGLNPEETEELAELIRELRE-RGITVLLVEHDMD-VVMSLADRVTVLDQGRVIAEGTPDEVR 231 (236)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEeecCHHHhc
Confidence 99999999999999999999999999999999987 5999999999997 588899999999999999999987763
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-46 Score=374.74 Aligned_cols=212 Identities=33% Similarity=0.540 Sum_probs=187.9
Q ss_pred hcccccccccc----cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEc
Q 006505 47 KLEEAADSDGV----RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVT 122 (643)
Q Consensus 47 ~~~~~~~~~~~----~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~ 122 (643)
++++++++|++ +.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++. ..++.++|++
T Consensus 2 ~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~--~~~~~i~~v~ 79 (220)
T cd03293 2 EVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVT--GPGPDRGYVF 79 (220)
T ss_pred eEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECc--cccCcEEEEe
Confidence 46788888877 78999999999999999999999999999999999999999999999998874 2457799999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEE
Q 006505 123 QRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVL 202 (643)
Q Consensus 123 Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~il 202 (643)
|++.+++.+|++||+.+....+ ..+.+...++++++++.+|+++..+ +.+.+||||||||++||+||+.+|+++
T Consensus 80 q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgG~~qrl~la~al~~~p~ll 153 (220)
T cd03293 80 QQDALLPWLTVLDNVALGLELQ-GVPKAEARERAEELLELVGLSGFEN-----AYPHQLSGGMRQRVALARALAVDPDVL 153 (220)
T ss_pred cccccccCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCChhhhh-----CCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 9999999999999999876543 2233445567899999999987664 466899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEe--CCeEEEecChh
Q 006505 203 ILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLA--NGSVLHHGTVD 267 (643)
Q Consensus 203 llDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~--~G~iv~~G~~~ 267 (643)
+|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|+ +|++++.++++
T Consensus 154 lLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 154 LLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDID-EAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred EECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCCCEEEEEEEec
Confidence 9999999999999999999999997656899999999997 5788999999999 79999988764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-46 Score=380.06 Aligned_cols=218 Identities=33% Similarity=0.523 Sum_probs=189.9
Q ss_pred hcccccccccc-cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc------hhhcccEE
Q 006505 47 KLEEAADSDGV-RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK------AQFRKVSG 119 (643)
Q Consensus 47 ~~~~~~~~~~~-~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~------~~~~~~i~ 119 (643)
++++++++|++ +.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++.. ...++.++
T Consensus 2 ~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~ 81 (241)
T cd03256 2 EVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIG 81 (241)
T ss_pred EEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccE
Confidence 46788889887 789999999999999999999999999999999999999999999999988742 23567899
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhc-------CCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHH
Q 006505 120 YVTQRDTLFPLLTVEETLMFSAKLR-------LRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIG 192 (643)
Q Consensus 120 yv~Q~~~l~~~lTv~E~l~~~~~~~-------~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia 192 (643)
|++|++.+++.+||+||+.+..... .....+...+++.++++.+++.+.. ++.+.+|||||||||+||
T Consensus 82 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~LS~G~~qrv~la 156 (241)
T cd03256 82 MIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKA-----YQRADQLSGGQQQRVAIA 156 (241)
T ss_pred EEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhh-----CCCcccCCHHHHHHHHHH
Confidence 9999999999999999998754211 0111233456788999999998765 446789999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 193 FDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 193 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
++|+.+|++|+|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|++++.|+++++.
T Consensus 157 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (241)
T cd03256 157 RALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYADRIVGLKDGRIVFDGPPAELT 233 (241)
T ss_pred HHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeecCHHHhh
Confidence 99999999999999999999999999999999998756899999999997 588899999999999999999988763
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-46 Score=372.84 Aligned_cols=211 Identities=29% Similarity=0.539 Sum_probs=187.4
Q ss_pred hcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc-hhhcccEEEEccCC
Q 006505 47 KLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-AQFRKVSGYVTQRD 125 (643)
Q Consensus 47 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~-~~~~~~i~yv~Q~~ 125 (643)
++++++++|+++++|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ...++.++|++|++
T Consensus 2 ~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~ 81 (213)
T cd03301 2 ELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNY 81 (213)
T ss_pred EEEeeEEEECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecCh
Confidence 46788889988899999999999999999999999999999999999999999999999988743 22346799999999
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q 006505 126 TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILD 205 (643)
Q Consensus 126 ~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlD 205 (643)
.+++.+|++||+.+....+ ....++.+++++++++.+|+.+..+ ++++.||||||||++||++|+.+|++++||
T Consensus 82 ~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qr~~laral~~~p~llllD 155 (213)
T cd03301 82 ALYPHMTVYDNIAFGLKLR-KVPKDEIDERVREVAELLQIEHLLD-----RKPKQLSGGQRQRVALGRAIVREPKVFLMD 155 (213)
T ss_pred hhccCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCHHHHh-----CChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 9999999999999875543 2234555667899999999987664 467899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEec
Q 006505 206 EPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHG 264 (643)
Q Consensus 206 EPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 264 (643)
|||+|||+.++..+.+.|++++++.|+|||++|||++ ++.+++|++++|++|++++.|
T Consensus 156 EPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 156 EPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV-EAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEECCEEEecC
Confidence 9999999999999999999998756899999999997 588899999999999999876
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-46 Score=376.62 Aligned_cols=216 Identities=31% Similarity=0.576 Sum_probs=191.0
Q ss_pred hcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hh-hcccEEEEc
Q 006505 47 KLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQ-FRKVSGYVT 122 (643)
Q Consensus 47 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~-~~~~i~yv~ 122 (643)
++++++++|+++.+|+|+|+++++||+++|+||||||||||||+|+|+.+|++|+|.++|+++.. .. .++.++|++
T Consensus 2 ~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~ 81 (232)
T cd03218 2 RAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLP 81 (232)
T ss_pred eEEEEEEEeCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEec
Confidence 46788999988899999999999999999999999999999999999999999999999987643 12 345799999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEE
Q 006505 123 QRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVL 202 (643)
Q Consensus 123 Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~il 202 (643)
|++.+++.+||+||+.+....+ ....++..++++++++.+|+++..+ +.++.||||||||++||++|+.+|++|
T Consensus 82 q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrl~la~al~~~p~ll 155 (232)
T cd03218 82 QEASIFRKLTVEENILAVLEIR-GLSKKEREEKLEELLEEFHITHLRK-----SKASSLSGGERRRVEIARALATNPKFL 155 (232)
T ss_pred CCccccccCcHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCChhhhh-----CChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999999999999865433 2233445567889999999987664 467899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 203 ILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 203 llDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+++|++++|++|++++.|+++++.
T Consensus 156 llDEPt~~LD~~~~~~~~~~l~~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 221 (232)
T cd03218 156 LLDEPFAGVDPIAVQDIQKIIKILKDR-GIGVLITDHNVR-ETLSITDRAYIIYEGKVLAEGTPEEIA 221 (232)
T ss_pred EecCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEEeCHHHhh
Confidence 999999999999999999999999874 899999999997 588999999999999999999987653
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-46 Score=384.84 Aligned_cols=221 Identities=24% Similarity=0.440 Sum_probs=194.6
Q ss_pred hhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc------hhhccc
Q 006505 44 ELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK------AQFRKV 117 (643)
Q Consensus 44 ~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~------~~~~~~ 117 (643)
++++++|++++|+++.+|+|+|+++++||+++|+|||||||||||++|+|+.+|++|+|.++|+++.. ...++.
T Consensus 6 ~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~ 85 (269)
T PRK11831 6 NLVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKR 85 (269)
T ss_pred ceEEEeCeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhc
Confidence 45788999999998899999999999999999999999999999999999999999999999987742 124567
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhc
Q 006505 118 SGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIH 197 (643)
Q Consensus 118 i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~ 197 (643)
++|++|++.+++.+||.||+.+........+.++.++++.++++.+|+.+..+ ..+..||||||||++||++|+.
T Consensus 86 i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----~~~~~LSgGq~qrv~laral~~ 160 (269)
T PRK11831 86 MSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAK-----LMPSELSGGMARRAALARAIAL 160 (269)
T ss_pred EEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhh-----CChhhCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999886543212234445567889999999987664 4678999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 198 DPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 198 ~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
+|++++|||||+|||+.++..+.+.|++++++.|+|||++|||++ ++.+++|++++|++|++++.|+++++.
T Consensus 161 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 161 EPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP-EVLSIADHAYIVADKKIVAHGSAQALQ 232 (269)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhhCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999998755899999999997 588999999999999999999987753
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-46 Score=378.08 Aligned_cols=218 Identities=27% Similarity=0.460 Sum_probs=192.2
Q ss_pred hhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc-----hhhcccEEE
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-----AQFRKVSGY 120 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~-----~~~~~~i~y 120 (643)
+++++++++|+++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ..+++.++|
T Consensus 2 l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~ 81 (240)
T PRK09493 2 IEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGM 81 (240)
T ss_pred EEEEeEEEEECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEE
Confidence 457889999988899999999999999999999999999999999999999999999999988743 234678999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCC
Q 006505 121 VTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPK 200 (643)
Q Consensus 121 v~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~ 200 (643)
++|++.+++.+||+||+.+..........++.++++.++++.+|+++..+ +.++.||||||||++||++|+.+|+
T Consensus 82 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----~~~~~LS~G~~qrv~la~al~~~p~ 156 (240)
T PRK09493 82 VFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAH-----HYPSELSGGQQQRVAIARALAVKPK 156 (240)
T ss_pred EecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHh-----cChhhcCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999886421112234455667899999999987664 4678999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 201 VLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 201 illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
+++|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+++|++++|++|++++.|+++++.
T Consensus 157 llllDEP~~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 224 (240)
T PRK09493 157 LMLFDEPTSALDPELRHEVLKVMQDLAEE-GMTMVIVTHEIG-FAEKVASRLIFIDKGRIAEDGDPQVLI 224 (240)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeeCCHHHHh
Confidence 99999999999999999999999999864 899999999997 578899999999999999999988753
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-46 Score=373.88 Aligned_cols=207 Identities=28% Similarity=0.458 Sum_probs=182.2
Q ss_pred hhcccccccccc--cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc------hhhccc
Q 006505 46 SKLEEAADSDGV--RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK------AQFRKV 117 (643)
Q Consensus 46 ~~~~~~~~~~~~--~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~------~~~~~~ 117 (643)
++++|++++|++ +.+|+|+|+++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. ..+++.
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRH 81 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHh
Confidence 457888888854 469999999999999999999999999999999999999999999999987632 125678
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhc
Q 006505 118 SGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIH 197 (643)
Q Consensus 118 i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~ 197 (643)
++|++|++.+++.+||+||+.+....+ ....++.+++++++++.+|+.+..+ +.+.+||||||||++||+||+.
T Consensus 82 i~~~~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgG~~qrv~laral~~ 155 (216)
T TIGR00960 82 IGMVFQDHRLLSDRTVYDNVAFPLRII-GVPPRDANERVSAALEKVGLEGKAH-----ALPMQLSGGEQQRVAIARAIVH 155 (216)
T ss_pred ceEEecCccccccccHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCChhhhh-----CChhhCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999876543 2234445677899999999987664 4668999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeE
Q 006505 198 DPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSV 260 (643)
Q Consensus 198 ~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 260 (643)
+|++|||||||+|||+.++..+.+.|++++++ |+|||++|||++ .+.+++|++++|++|++
T Consensus 156 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 156 KPPLLLADEPTGNLDPELSRDIMRLFEEFNRR-GTTVLVATHDIN-LVETYRHRTLTLSRGRL 216 (216)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999764 899999999997 57789999999999974
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-45 Score=386.19 Aligned_cols=229 Identities=31% Similarity=0.481 Sum_probs=195.4
Q ss_pred hhcccccccccc-----cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc-----hhhc
Q 006505 46 SKLEEAADSDGV-----RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-----AQFR 115 (643)
Q Consensus 46 ~~~~~~~~~~~~-----~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~-----~~~~ 115 (643)
+++++++++|+. +++|+|||+++++||++||+||||||||||+++|+|+.+|++|+|.++|+++.. ...+
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 457888888864 479999999999999999999999999999999999999999999999998743 2456
Q ss_pred ccEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCh--hhhhhhcCCCcCCCCCHHHHHHHHHH
Q 006505 116 KVSGYVTQRDT-LFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLE--HVAMARVGDDRVRGISGGERRRVSIG 192 (643)
Q Consensus 116 ~~i~yv~Q~~~-l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~--~~~~~~vg~~~~~~LSGGerqRv~ia 192 (643)
+.+|||+|++. .+...||+||+.+..... +.++++..++++++++.+||. +.. +++++.||||||||++||
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~~-----~~~~~~LSgGq~qrv~iA 156 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINL-GLSEEEIENRVKRAMNIVGLDYEDYK-----DKSPFELSGGQKRRVAIA 156 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHC-CCCHHHHHHHHHHHHHHcCCCchhhc-----cCCcccCCHHHHHHHHHH
Confidence 78999999963 333469999999875432 335566677899999999996 444 557789999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH-
Q 006505 193 FDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV- 271 (643)
Q Consensus 193 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~- 271 (643)
+||+.+|++|+|||||+|||+.++.++.++|++++++.|+|||++|||++ ++.++||+|++|++|++++.|+++++.+
T Consensus 157 raL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 235 (287)
T PRK13637 157 GVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME-DVAKLADRIIVMNKGKCELQGTPREVFKE 235 (287)
T ss_pred HHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999999999999999999999998766999999999997 5788999999999999999999988753
Q ss_pred --HHHHcCCCCC
Q 006505 272 --SLRMMGLQLP 281 (643)
Q Consensus 272 --~f~~~g~~~p 281 (643)
.+...|+..|
T Consensus 236 ~~~~~~~~~~~~ 247 (287)
T PRK13637 236 VETLESIGLAVP 247 (287)
T ss_pred HHHHHHcCCCCC
Confidence 2334455444
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-46 Score=390.15 Aligned_cols=218 Identities=31% Similarity=0.547 Sum_probs=196.5
Q ss_pred hhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc--hhhcccEEEEcc
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK--AQFRKVSGYVTQ 123 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~--~~~~~~i~yv~Q 123 (643)
+++++++++|+++.+|+|+||++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++.. ...++.+||+||
T Consensus 3 l~~~~l~~~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q 82 (301)
T TIGR03522 3 IRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPE 82 (301)
T ss_pred EEEEEEEEEECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecC
Confidence 467899999999999999999999999999999999999999999999999999999999988743 345678999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEE
Q 006505 124 RDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLI 203 (643)
Q Consensus 124 ~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~ill 203 (643)
++.+++.+||.||+.+.+.++ +.+.++..++++++++.+||.+..++ .++.||||||||++||+||+++|++|+
T Consensus 83 ~~~l~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~~~~~-----~~~~LS~G~~qrv~la~al~~~p~lli 156 (301)
T TIGR03522 83 HNPLYLDMYVREYLQFIAGIY-GMKGQLLKQRVEEMIELVGLRPEQHK-----KIGQLSKGYRQRVGLAQALIHDPKVLI 156 (301)
T ss_pred CCCCCCCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHCCCchHhcC-----chhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999999999999999877654 22445556678999999999987744 567999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHHH
Q 006505 204 LDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSVS 272 (643)
Q Consensus 204 lDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~ 272 (643)
|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.++||++++|++|++++.|+++++...
T Consensus 157 LDEPt~gLD~~~~~~l~~~l~~~~~--~~tiii~sH~l~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 157 LDEPTTGLDPNQLVEIRNVIKNIGK--DKTIILSTHIMQ-EVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred EcCCcccCCHHHHHHHHHHHHHhcC--CCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 9999999999999999999999963 799999999997 58999999999999999999999987653
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-46 Score=376.09 Aligned_cols=215 Identities=26% Similarity=0.456 Sum_probs=187.0
Q ss_pred hcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCC-----CCCccEEEECCCcCCc-----hhhcc
Q 006505 47 KLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKL-----TPQSGSTFVNGSPIDK-----AQFRK 116 (643)
Q Consensus 47 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~-----~~~~G~I~~~g~~~~~-----~~~~~ 116 (643)
+++|++++|+++++|+|+|+++++||+++|+||||||||||+|+|+|+. +|++|+|.++|+++.. ..+++
T Consensus 2 ~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (227)
T cd03260 2 ELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRR 81 (227)
T ss_pred EEEEEEEEcCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHh
Confidence 4678889998889999999999999999999999999999999999999 8999999999988642 23567
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHh
Q 006505 117 VSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVI 196 (643)
Q Consensus 117 ~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~ 196 (643)
.++|++|++.++ .+||+||+.+....+.....++.+++++++++.+|+.+..++.+ .+.+||||||||++||++|+
T Consensus 82 ~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---~~~~LSgG~~qrv~la~al~ 157 (227)
T cd03260 82 RVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRL---HALGLSGGQQQRLCLARALA 157 (227)
T ss_pred hEEEEecCchhc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccC---CcccCCHHHHHHHHHHHHHh
Confidence 899999999888 78999999987654321122334567889999999987654421 05899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhH
Q 006505 197 HDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDL 268 (643)
Q Consensus 197 ~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 268 (643)
.+|++|+|||||+|||+.++..+.+.|++++++ +|||++||+++ ++.+++|++++|++|++++.|++++
T Consensus 158 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 158 NEPEVLLLDEPTSALDPISTAKIEELIAELKKE--YTIVIVTHNMQ-QAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC--cEEEEEeccHH-HHHHhCCEEEEEeCCEEEEecCccc
Confidence 999999999999999999999999999999763 89999999997 5888999999999999999998765
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-46 Score=379.64 Aligned_cols=218 Identities=30% Similarity=0.469 Sum_probs=189.4
Q ss_pred hhccccccccc-ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc------hhhcccE
Q 006505 46 SKLEEAADSDG-VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK------AQFRKVS 118 (643)
Q Consensus 46 ~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~------~~~~~~i 118 (643)
+.+++++++|+ ++++|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ..+++.+
T Consensus 2 l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 81 (243)
T TIGR02315 2 LEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRI 81 (243)
T ss_pred eEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhhe
Confidence 45788888997 7789999999999999999999999999999999999999999999999988642 1246789
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhc-------CCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHH
Q 006505 119 GYVTQRDTLFPLLTVEETLMFSAKLR-------LRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSI 191 (643)
Q Consensus 119 ~yv~Q~~~l~~~lTv~E~l~~~~~~~-------~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~i 191 (643)
+|++|++.+++.+||+||+.+..... .....++.++++.++++.+|+.+.. ++.+..||||||||++|
T Consensus 82 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~LSgG~~qrv~l 156 (243)
T TIGR02315 82 GMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKA-----YQRADQLSGGQQQRVAI 156 (243)
T ss_pred EEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhh-----cCCcccCCHHHHHHHHH
Confidence 99999999999999999998643210 0011233456788999999998766 44678999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHH
Q 006505 192 GFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLL 269 (643)
Q Consensus 192 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 269 (643)
|+||+.+|++|+|||||+|||+.++..+.+.|++++++.|+|||++||+++ .+.+++|++++|++|++++.|+++++
T Consensus 157 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 157 ARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD-LAKKYADRIVGLKAGEIVFDGAPSEL 233 (243)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEECCEEEecCCHHHh
Confidence 999999999999999999999999999999999997655899999999997 47889999999999999999998765
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-46 Score=370.05 Aligned_cols=209 Identities=33% Similarity=0.594 Sum_probs=186.6
Q ss_pred hcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEccCCC
Q 006505 47 KLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDT 126 (643)
Q Consensus 47 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~ 126 (643)
++++++++|+++.+++|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ..++.++|++|++.
T Consensus 2 ~~~~l~~~~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~-~~~~~i~~~~q~~~ 80 (210)
T cd03269 2 EVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI-AARNRIGYLPEERG 80 (210)
T ss_pred EEEEEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH-HHHccEEEeccCCc
Confidence 46788889988889999999999999999999999999999999999999999999999998754 45678999999999
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q 006505 127 LFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDE 206 (643)
Q Consensus 127 l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDE 206 (643)
+++.+|++||+.+....+ ..+.++.+++++++++.+|+++..++ .+.+||||||||++||++|+.+|++++|||
T Consensus 81 ~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrl~la~al~~~p~~lllDE 154 (210)
T cd03269 81 LYPKMKVIDQLVYLAQLK-GLKKEEARRRIDEWLERLELSEYANK-----RVEELSKGNQQKVQFIAAVIHDPELLILDE 154 (210)
T ss_pred CCcCCcHHHHHHHHHHHc-CCChHHHHHHHHHHHHHcCChHHHhC-----cHhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 999999999998876543 22344556778999999999876644 667999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEec
Q 006505 207 PTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHG 264 (643)
Q Consensus 207 PtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 264 (643)
||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+++|++++|++|++++.|
T Consensus 155 P~~~LD~~~~~~~~~~l~~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 155 PFSGLDPVNVELLKDVIRELARA-GKTVILSTHQME-LVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHC-CCEEEEECCCHH-HHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999874 899999999997 478899999999999998764
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-46 Score=371.88 Aligned_cols=214 Identities=35% Similarity=0.597 Sum_probs=189.6
Q ss_pred hcccccccccc--cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc--hhhcccEEEEc
Q 006505 47 KLEEAADSDGV--RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK--AQFRKVSGYVT 122 (643)
Q Consensus 47 ~~~~~~~~~~~--~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~--~~~~~~i~yv~ 122 (643)
++++++++|++ +++|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ..+++.++|++
T Consensus 2 ~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~ 81 (220)
T cd03263 2 QIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCP 81 (220)
T ss_pred EEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEec
Confidence 46788888876 789999999999999999999999999999999999999999999999998743 34567799999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEE
Q 006505 123 QRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVL 202 (643)
Q Consensus 123 Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~il 202 (643)
|++.+++.+|++||+.+....+ +.+.++.+++++++++.++|.+..++ .+.+||||||||++||++|+.+|+++
T Consensus 82 q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~la~al~~~p~ll 155 (220)
T cd03263 82 QFDALFDELTVREHLRFYARLK-GLPKSEIKEEVELLLRVLGLTDKANK-----RARTLSGGMKRKLSLAIALIGGPSVL 155 (220)
T ss_pred CcCCccccCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCHHHHhC-----hhhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999999999999876543 22344455678999999999876644 56799999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHH
Q 006505 203 ILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLL 269 (643)
Q Consensus 203 llDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 269 (643)
+|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+++|++++|++|++++.|+++++
T Consensus 156 llDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 156 LLDEPTSGLDPASRRAIWDLILEVRK--GRSIILTTHSMD-EAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred EECCCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEcCCHH-HHHHhcCEEEEEECCEEEecCCHHHc
Confidence 99999999999999999999999975 599999999997 47889999999999999999988764
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-46 Score=379.10 Aligned_cols=219 Identities=28% Similarity=0.470 Sum_probs=192.8
Q ss_pred hhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc-----------hh
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-----------AQ 113 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~-----------~~ 113 (643)
++++++++++|+++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ..
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 82 (250)
T PRK11264 3 AIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQ 82 (250)
T ss_pred cEEEeceEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHH
Confidence 4678899999988899999999999999999999999999999999999999999999999987642 23
Q ss_pred hcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHH
Q 006505 114 FRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGF 193 (643)
Q Consensus 114 ~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~ 193 (643)
.++.++|++|++.+++.+|++||+.++.........++..+++.++++.+|+.+.. +..+++||||||||++||+
T Consensus 83 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----~~~~~~LS~Gq~qrv~la~ 157 (250)
T PRK11264 83 LRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKE-----TSYPRRLSGGQQQRVAIAR 157 (250)
T ss_pred hhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchh-----hCChhhCChHHHHHHHHHH
Confidence 46789999999999998999999987543211223445566788999999998765 3467899999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 194 DVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 194 aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+++|++++|++|++++.|+++++.
T Consensus 158 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~tvi~~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 232 (250)
T PRK11264 158 ALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQE-KRTMVIVTHEMS-FARDVADRAIFMDQGRIVEQGPAKALF 232 (250)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999864 899999999997 588899999999999999999987763
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-46 Score=371.67 Aligned_cols=211 Identities=33% Similarity=0.566 Sum_probs=187.5
Q ss_pred hhccccccccccc----ceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc--hhhcccEE
Q 006505 46 SKLEEAADSDGVR----RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK--AQFRKVSG 119 (643)
Q Consensus 46 ~~~~~~~~~~~~~----~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~--~~~~~~i~ 119 (643)
+++++++++|+++ ++|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ..+++.++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~ 81 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLG 81 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEE
Confidence 4578888899876 79999999999999999999999999999999999999999999999988743 34567899
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCC
Q 006505 120 YVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDP 199 (643)
Q Consensus 120 yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p 199 (643)
|++|++.+++.+||+||+.+....+ ....++..++++++++.+|+.+..++ .++.||||||||++||+||+.+|
T Consensus 82 ~~~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~laral~~~p 155 (218)
T cd03266 82 FVSDSTGLYDRLTARENLEYFAGLY-GLKGDELTARLEELADRLGMEELLDR-----RVGGFSTGMRQKVAIARALVHDP 155 (218)
T ss_pred EecCCcccCcCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCHHHHhh-----hhhhcCHHHHHHHHHHHHHhcCC
Confidence 9999999999999999998865543 22344556788999999999877644 56799999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEec
Q 006505 200 KVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHG 264 (643)
Q Consensus 200 ~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 264 (643)
++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+++|++++|++|++++.|
T Consensus 156 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~~tH~~~-~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 156 PVLLLDEPTTGLDVMATRALREFIRQLRAL-GKCILFSTHIMQ-EVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred CEEEEcCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHH-HHHHhcCEEEEEECCEEeecC
Confidence 999999999999999999999999999764 899999999997 588899999999999998754
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-45 Score=376.60 Aligned_cols=217 Identities=29% Similarity=0.568 Sum_probs=192.0
Q ss_pred hcccccccccc-cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEEEEc
Q 006505 47 KLEEAADSDGV-RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGYVT 122 (643)
Q Consensus 47 ~~~~~~~~~~~-~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~yv~ 122 (643)
++++++++|++ +.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ...++.++|++
T Consensus 2 ~~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 81 (242)
T cd03295 2 EFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVI 81 (242)
T ss_pred EEEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEc
Confidence 46788888887 789999999999999999999999999999999999999999999999988643 34567899999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChh--hhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCC
Q 006505 123 QRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEH--VAMARVGDDRVRGISGGERRRVSIGFDVIHDPK 200 (643)
Q Consensus 123 Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~--~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~ 200 (643)
|++.+++.+||+||+.+....+ ....++..+++.++++.+|+.+ .. ++.+++||||||||++||++|+.+|+
T Consensus 82 q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~l~l~~~~~~-----~~~~~~LS~G~~qrv~laral~~~p~ 155 (242)
T cd03295 82 QQIGLFPHMTVEENIALVPKLL-KWPKEKIRERADELLALVGLDPAEFA-----DRYPHELSGGQQQRVGVARALAADPP 155 (242)
T ss_pred cCccccCCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCCcHHHH-----hcChhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999875543 2234455667899999999975 44 44678999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 201 VLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 201 illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
+++|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|++++.|+++++.
T Consensus 156 llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 224 (242)
T cd03295 156 LLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAIMKNGEIVQVGTPDEIL 224 (242)
T ss_pred EEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 999999999999999999999999998755899999999997 588999999999999999999887653
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-45 Score=385.34 Aligned_cols=232 Identities=27% Similarity=0.412 Sum_probs=198.4
Q ss_pred hhcccccccccc-----cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc-------hh
Q 006505 46 SKLEEAADSDGV-----RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-------AQ 113 (643)
Q Consensus 46 ~~~~~~~~~~~~-----~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~-------~~ 113 (643)
+++++++++|+. +.+|+|||+++++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.. ..
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 457888888863 259999999999999999999999999999999999999999999999998741 24
Q ss_pred hcccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCh-hhhhhhcCCCcCCCCCHHHHHHHH
Q 006505 114 FRKVSGYVTQRD--TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLE-HVAMARVGDDRVRGISGGERRRVS 190 (643)
Q Consensus 114 ~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~-~~~~~~vg~~~~~~LSGGerqRv~ 190 (643)
.++.+|||+|++ .+++ .||.||+.|+.... ..++++.++++.++++.+||. +.. ++.++.||||||||++
T Consensus 82 ~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~~~~-----~~~~~~LSgGqkqrva 154 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNF-GIPKEKAEKIAAEKLEMVGLADEFW-----EKSPFELSGGQMRRVA 154 (288)
T ss_pred HHhhEEEEecCcchhccc-chHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHcCCChhhc-----cCCcccCCHHHHHHHH
Confidence 577899999986 5565 59999999876432 234566677899999999995 344 4577899999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 191 IGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 191 ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
||++|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++|||++ ++.++||+|++|++|++++.|+++++.
T Consensus 155 iA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~-g~til~vtHd~~-~~~~~~dri~~l~~G~i~~~g~~~~~~ 232 (288)
T PRK13643 155 IAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQS-GQTVVLVTHLMD-DVADYADYVYLLEKGHIISCGTPSDVF 232 (288)
T ss_pred HHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999999999874 999999999997 578899999999999999999999875
Q ss_pred H---HHHHcCCCCCCCCCh
Q 006505 271 V---SLRMMGLQLPMHVNV 286 (643)
Q Consensus 271 ~---~f~~~g~~~p~~~n~ 286 (643)
+ .+...|+.+|.....
T Consensus 233 ~~~~~~~~~~~~~p~~~~~ 251 (288)
T PRK13643 233 QEVDFLKAHELGVPKATHF 251 (288)
T ss_pred cCHHHHHHcCCCCChHHHH
Confidence 3 345667776654333
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-46 Score=371.72 Aligned_cols=206 Identities=33% Similarity=0.555 Sum_probs=180.3
Q ss_pred hcccccccccc----cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCch------h-hc
Q 006505 47 KLEEAADSDGV----RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKA------Q-FR 115 (643)
Q Consensus 47 ~~~~~~~~~~~----~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~------~-~~ 115 (643)
++++++++|++ +.+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++... . .+
T Consensus 2 ~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 81 (218)
T cd03255 2 ELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRR 81 (218)
T ss_pred eEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHh
Confidence 46788888876 7899999999999999999999999999999999999999999999999887431 1 34
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHH
Q 006505 116 KVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDV 195 (643)
Q Consensus 116 ~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL 195 (643)
+.++|++|++.+++.+||+||+.+....+ ....++.+++++++++.+|+++..+ +.++.||||||||++||+||
T Consensus 82 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv~la~al 155 (218)
T cd03255 82 RHIGFVFQSFNLLPDLTALENVELPLLLA-GVPKKERRERAEELLERVGLGDRLN-----HYPSELSGGQQQRVAIARAL 155 (218)
T ss_pred hcEEEEeeccccCCCCcHHHHHHHHHhhc-CCCHHHHHHHHHHHHHHcCCchhhh-----cChhhcCHHHHHHHHHHHHH
Confidence 67999999999999999999999876543 2233444567899999999987664 46689999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeE
Q 006505 196 IHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSV 260 (643)
Q Consensus 196 ~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 260 (643)
+.+|++|||||||+|||+.++..+.+.|++++++.|+|||++||+++. +. .+|++++|++|++
T Consensus 156 ~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-~~-~~d~v~~l~~G~i 218 (218)
T cd03255 156 ANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPEL-AE-YADRIIELRDGKI 218 (218)
T ss_pred ccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHH-Hh-hhcEEEEeeCCcC
Confidence 999999999999999999999999999999987458999999999973 54 9999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-45 Score=380.72 Aligned_cols=217 Identities=27% Similarity=0.406 Sum_probs=192.1
Q ss_pred hcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hh----hcccEE
Q 006505 47 KLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQ----FRKVSG 119 (643)
Q Consensus 47 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~----~~~~i~ 119 (643)
.++++.++|+.+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++.. .. .++.++
T Consensus 26 ~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~ 105 (269)
T cd03294 26 SKEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKIS 105 (269)
T ss_pred hhhhhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEE
Confidence 46788999999999999999999999999999999999999999999999999999999987642 11 235799
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCC
Q 006505 120 YVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDP 199 (643)
Q Consensus 120 yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p 199 (643)
|++|++.+++.+||+||+.+..... ....++..++++++++.+||.+..++ .+++||||||||++||+||+.+|
T Consensus 106 ~v~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~Gq~qrv~lAral~~~p 179 (269)
T cd03294 106 MVFQSFALLPHRTVLENVAFGLEVQ-GVPRAEREERAAEALELVGLEGWEHK-----YPDELSGGMQQRVGLARALAVDP 179 (269)
T ss_pred EEecCcccCCCCcHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCHhHhhC-----CcccCCHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999875433 22344455678899999999876644 66799999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 200 KVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 200 ~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
++|||||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|++++.|+++++.
T Consensus 180 ~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 249 (269)
T cd03294 180 DILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDRIAIMKDGRLVQVGTPEEIL 249 (269)
T ss_pred CEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999999998655899999999997 588999999999999999999987764
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-46 Score=400.98 Aligned_cols=219 Identities=26% Similarity=0.439 Sum_probs=195.3
Q ss_pred hhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEEEE
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGYV 121 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~yv 121 (643)
+++++|++++|+++++|+|+||++++||+++|+||||||||||||+|+|+++|++|+|.++|+++.. .+.++.+|||
T Consensus 3 ~L~~~nls~~y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v 82 (402)
T PRK09536 3 MIDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASV 82 (402)
T ss_pred eEEEeeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEE
Confidence 4678899999999999999999999999999999999999999999999999999999999988743 4567889999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcC
Q 006505 122 TQRDTLFPLLTVEETLMFSAKLR---LRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHD 198 (643)
Q Consensus 122 ~Q~~~l~~~lTv~E~l~~~~~~~---~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~ 198 (643)
+|++.+++.+||+||+.++.... .....++.+++++++++.+|+.+..+ +++++||||||||++|||||+++
T Consensus 83 ~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~-----~~~~~LSgGerQRv~IArAL~~~ 157 (402)
T PRK09536 83 PQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFAD-----RPVTSLSGGERQRVLLARALAQA 157 (402)
T ss_pred ccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhc-----CChhhCCHHHHHHHHHHHHHHcC
Confidence 99999988999999998864321 11112345678999999999987774 46789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 199 PKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 199 p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
|++|||||||+|||+.++.+++++|+++++ .|+|||+++|+++ ++.++||++++|++|++++.|+++++.
T Consensus 158 P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~-~g~TIIivsHdl~-~~~~~adrii~l~~G~iv~~G~~~ev~ 227 (402)
T PRK09536 158 TPVLLLDEPTASLDINHQVRTLELVRRLVD-DGKTAVAAIHDLD-LAARYCDELVLLADGRVRAAGPPADVL 227 (402)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999987 4899999999998 588999999999999999999998753
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-45 Score=372.62 Aligned_cols=218 Identities=34% Similarity=0.521 Sum_probs=190.7
Q ss_pred hhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc--hhhcccEEEEcc
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK--AQFRKVSGYVTQ 123 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~--~~~~~~i~yv~Q 123 (643)
+++++++++|+++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.. ...++.++|++|
T Consensus 2 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q 81 (236)
T TIGR03864 2 LEVAGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQ 81 (236)
T ss_pred EEEEeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCC
Confidence 457889999988899999999999999999999999999999999999999999999999987643 223457999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEE
Q 006505 124 RDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLI 203 (643)
Q Consensus 124 ~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~ill 203 (643)
++.+++.+|++||+.+....+ +.+.++..+++.++++.+|+++..+ +.+..||||||||++||++|+.+|++++
T Consensus 82 ~~~~~~~~t~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~~~~-----~~~~~LS~G~~qrl~laral~~~p~lll 155 (236)
T TIGR03864 82 QPTLDLDLSVRQNLRYHAALH-GLSRAEARERIAALLARLGLAERAD-----DKVRELNGGHRRRVEIARALLHRPALLL 155 (236)
T ss_pred CCCCcccCcHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCChhhhc-----CChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 998888999999998765443 2234445567889999999987664 4667999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 204 LDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 204 lDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
|||||+|||+.++..+.+.|++++++.|+|||++||+++. +. .+|++++|++|++++.|+++++.+
T Consensus 156 lDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~~-~~d~i~~l~~G~i~~~~~~~~~~~ 221 (236)
T TIGR03864 156 LDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDE-IE-ADDRLVVLHRGRVLADGAAAELRG 221 (236)
T ss_pred EcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhh-Hh-hCCEEEEEeCCeEEEeCCHHHHHH
Confidence 9999999999999999999999986558999999999974 54 599999999999999999877643
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-45 Score=384.66 Aligned_cols=228 Identities=29% Similarity=0.469 Sum_probs=194.9
Q ss_pred hhcccccccccc-----cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc-------hh
Q 006505 46 SKLEEAADSDGV-----RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-------AQ 113 (643)
Q Consensus 46 ~~~~~~~~~~~~-----~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~-------~~ 113 (643)
+++++++++|+. +++|+|||+++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++.. ..
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 457888888864 569999999999999999999999999999999999999999999999998731 24
Q ss_pred hcccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCh-hhhhhhcCCCcCCCCCHHHHHHHH
Q 006505 114 FRKVSGYVTQRD--TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLE-HVAMARVGDDRVRGISGGERRRVS 190 (643)
Q Consensus 114 ~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~-~~~~~~vg~~~~~~LSGGerqRv~ 190 (643)
.++.+|||+|++ .+++ .||+||+.|+.... ..+.++.+++++++++.+||. +.. +++++.|||||||||+
T Consensus 83 ~~~~ig~v~q~~~~~l~~-~tv~eni~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~-----~~~~~~LSgGq~qrv~ 155 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFE-ETVEKDICFGPMNF-GVSEEDAKQKAREMIELVGLPEELL-----ARSPFELSGGQMRRVA 155 (290)
T ss_pred HHhhEEEEeeCchhhhhh-hhHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHCCCChhhh-----hCCcccCCHHHHHHHH
Confidence 567899999986 4554 69999999875432 234555667899999999996 445 4467899999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 191 IGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 191 ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
||++|+.+|++|||||||+|||+.++..+.+.|++++++.|.|||++|||++ ++.+++|+|++|++|++++.|+++++.
T Consensus 156 lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~drv~~l~~G~i~~~g~~~~~~ 234 (290)
T PRK13634 156 IAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVMHKGTVFLQGTPREIF 234 (290)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 9999999999999999999999999999999999998766999999999997 588999999999999999999998864
Q ss_pred H---HHHHcCCCCC
Q 006505 271 V---SLRMMGLQLP 281 (643)
Q Consensus 271 ~---~f~~~g~~~p 281 (643)
+ .+...+..+|
T Consensus 235 ~~~~~~~~~~~~~~ 248 (290)
T PRK13634 235 ADPDELEAIGLDLP 248 (290)
T ss_pred cCHHHHHHCCCCCC
Confidence 2 2344455444
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-45 Score=389.78 Aligned_cols=221 Identities=24% Similarity=0.389 Sum_probs=195.1
Q ss_pred hhhhcccccccccc-------------cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCC
Q 006505 44 ELSKLEEAADSDGV-------------RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPID 110 (643)
Q Consensus 44 ~~~~~~~~~~~~~~-------------~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~ 110 (643)
++++++|+++.|+. ..+++|||+++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.
T Consensus 7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~ 86 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLL 86 (331)
T ss_pred ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECC
Confidence 46788999888852 56999999999999999999999999999999999999999999999999874
Q ss_pred c------hhhcccEEEEccCC--CCCCCCCHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCh-hhhhhhcCCCcCCC
Q 006505 111 K------AQFRKVSGYVTQRD--TLFPLLTVEETLMFSAKLRL-RLPQAQLRARVKSLVKELGLE-HVAMARVGDDRVRG 180 (643)
Q Consensus 111 ~------~~~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~~~~-~~~~~~~~~~v~~~l~~lgl~-~~~~~~vg~~~~~~ 180 (643)
. ..+++.++||+|++ .++|.+||.||+.+...... ..++++.++++.++++.+||. +.. ++++.+
T Consensus 87 ~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~-----~~~p~~ 161 (331)
T PRK15079 87 GMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLI-----NRYPHE 161 (331)
T ss_pred cCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHh-----cCCccc
Confidence 3 13567899999997 68899999999998765432 235566677889999999994 333 557899
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeE
Q 006505 181 ISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSV 260 (643)
Q Consensus 181 LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 260 (643)
|||||||||+||+||+.+|++|++||||+|||+.++.+++++|+++.++.|.|+|++|||++ .+.+++|+|++|++|++
T Consensus 162 LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~-~~~~~~dri~vl~~G~i 240 (331)
T PRK15079 162 FSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA-VVKHISDRVLVMYLGHA 240 (331)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999998766999999999997 47889999999999999
Q ss_pred EEecChhHHH
Q 006505 261 LHHGTVDLLS 270 (643)
Q Consensus 261 v~~G~~~~~~ 270 (643)
++.|+++++.
T Consensus 241 ve~g~~~~i~ 250 (331)
T PRK15079 241 VELGTYDEVY 250 (331)
T ss_pred EEEcCHHHHH
Confidence 9999988765
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-46 Score=363.20 Aligned_cols=220 Identities=30% Similarity=0.579 Sum_probs=206.3
Q ss_pred hhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEccCC
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRD 125 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~ 125 (643)
+.+++++|+||.+.+++|+||+++||+|.+++|||||||||.+|+|.|+++|++|+|.++|.+++. ..+.+|||.|++.
T Consensus 3 L~ie~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~-~~~~rIGyLPEER 81 (300)
T COG4152 3 LEIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ-EIKNRIGYLPEER 81 (300)
T ss_pred eEEecchhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh-hhhhhcccChhhh
Confidence 568999999999999999999999999999999999999999999999999999999999999854 4577899999999
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q 006505 126 TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILD 205 (643)
Q Consensus 126 ~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlD 205 (643)
.|+|.+||.|.|.|.+.++ +.++++.+++++.+|+++++.... .+++++||.|++|++.+..+++++|++++||
T Consensus 82 GLy~k~tv~dql~yla~Lk-Gm~~~e~~~~~~~wLer~~i~~~~-----~~kIk~LSKGnqQKIQfisaviHePeLlILD 155 (300)
T COG4152 82 GLYPKMTVEDQLKYLAELK-GMPKAEIQKKLQAWLERLEIVGKK-----TKKIKELSKGNQQKIQFISAVIHEPELLILD 155 (300)
T ss_pred ccCccCcHHHHHHHHHHhc-CCcHHHHHHHHHHHHHhccccccc-----cchHHHhhhhhhHHHHHHHHHhcCCCEEEec
Confidence 9999999999999999987 568889999999999999998766 3467899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHHHHH
Q 006505 206 EPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSVSLR 274 (643)
Q Consensus 206 EPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~ 274 (643)
||+|||||.+...+-+.+.+++++ |.|||+|+|.++ .+.++||++++|++|+.|.+|+.+++...|.
T Consensus 156 EPFSGLDPVN~elLk~~I~~lk~~-GatIifSsH~Me-~vEeLCD~llmL~kG~~V~~G~v~~ir~~~G 222 (300)
T COG4152 156 EPFSGLDPVNVELLKDAIFELKEE-GATIIFSSHRME-HVEELCDRLLMLKKGQTVLYGTVEDIRRSFG 222 (300)
T ss_pred CCccCCChhhHHHHHHHHHHHHhc-CCEEEEecchHH-HHHHHhhhhheecCCceEEeccHHHHHHhcC
Confidence 999999999999999999999885 999999999998 5999999999999999999999999987553
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-45 Score=374.72 Aligned_cols=219 Identities=28% Similarity=0.497 Sum_probs=192.8
Q ss_pred hhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc----hhhcccEEE
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK----AQFRKVSGY 120 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~----~~~~~~i~y 120 (643)
++++++++++|+++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ...++.++|
T Consensus 3 ~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 82 (241)
T PRK10895 3 TLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGY 82 (241)
T ss_pred eEEEeCcEEEeCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEE
Confidence 4568899999988899999999999999999999999999999999999999999999999988743 224577999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCC
Q 006505 121 VTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPK 200 (643)
Q Consensus 121 v~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~ 200 (643)
++|++.+++.+||.||+.+....+.....++.+++++++++.+|+.+.. +..+++||||||||++||++|+.+|+
T Consensus 83 ~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~LS~G~~qrv~laral~~~p~ 157 (241)
T PRK10895 83 LPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLR-----DSMGQSLSGGERRRVEIARALAANPK 157 (241)
T ss_pred eccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHh-----hcchhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999987654321123344556789999999998765 44678999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 201 VLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 201 illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
+|+|||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.+++|++++|++|++++.|+++++.
T Consensus 158 llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiii~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~~ 225 (241)
T PRK10895 158 FILLDEPFAGVDPISVIDIKRIIEHLRD-SGLGVLITDHNVR-ETLAVCERAYIVSQGHLIAHGTPTEIL 225 (241)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEEcCHH-HHHHhcCEEEEEeCCeEEeeCCHHHHh
Confidence 9999999999999999999999999976 4999999999997 588999999999999999999988763
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-45 Score=379.99 Aligned_cols=229 Identities=28% Similarity=0.398 Sum_probs=194.9
Q ss_pred hhhccccccccc-ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEEE
Q 006505 45 LSKLEEAADSDG-VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGY 120 (643)
Q Consensus 45 ~~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~y 120 (643)
++++++++++|+ .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ...++.++|
T Consensus 4 ~l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 83 (274)
T PRK13647 4 IIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGL 83 (274)
T ss_pred eEEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEE
Confidence 467899999995 5679999999999999999999999999999999999999999999999998743 345678999
Q ss_pred EccCCC-CCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCC
Q 006505 121 VTQRDT-LFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDP 199 (643)
Q Consensus 121 v~Q~~~-l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p 199 (643)
++|++. .++..||.||+.|..... ..+.++.++++.++++.+||.+.. ++.+.+||||||||++||+||+.+|
T Consensus 84 v~q~~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~~~-----~~~~~~LSgG~~qrv~laraL~~~p 157 (274)
T PRK13647 84 VFQDPDDQVFSSTVWDDVAFGPVNM-GLDKDEVERRVEEALKAVRMWDFR-----DKPPYHLSYGQKKRVAIAGVLAMDP 157 (274)
T ss_pred EecChhhhhccCcHHHHHHhhHHHc-CCCHHHHHHHHHHHHHHCCCHHHh-----cCChhhCCHHHHHHHHHHHHHHcCC
Confidence 999963 445579999999865432 234445567789999999998766 4467899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH--HHHHHcC
Q 006505 200 KVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS--VSLRMMG 277 (643)
Q Consensus 200 ~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~--~~f~~~g 277 (643)
++|+|||||+|||+.++.++.+.|++++++ |+|||++||+++ .+.++||++++|++|++++.|+++++. +.+...|
T Consensus 158 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~-g~tili~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~ 235 (274)
T PRK13647 158 DVIVLDEPMAYLDPRGQETLMEILDRLHNQ-GKTVIVATHDVD-LAAEWADQVIVLKEGRVLAEGDKSLLTDEDIVEQAG 235 (274)
T ss_pred CEEEEECCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHhcCHHHHHHcC
Confidence 999999999999999999999999999875 999999999997 477899999999999999999987542 2233445
Q ss_pred CCCC
Q 006505 278 LQLP 281 (643)
Q Consensus 278 ~~~p 281 (643)
+.+|
T Consensus 236 ~~~~ 239 (274)
T PRK13647 236 LRLP 239 (274)
T ss_pred CCCC
Confidence 4433
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-45 Score=370.45 Aligned_cols=214 Identities=31% Similarity=0.497 Sum_probs=186.9
Q ss_pred hcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hh-hcccEEEEc
Q 006505 47 KLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQ-FRKVSGYVT 122 (643)
Q Consensus 47 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~-~~~~i~yv~ 122 (643)
++++++++|+++++|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. .. .++.++|++
T Consensus 2 ~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~ 81 (222)
T cd03224 2 EVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVP 81 (222)
T ss_pred EEeeEEeecCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEec
Confidence 46788889988889999999999999999999999999999999999999999999999987643 12 356799999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc-CChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCE
Q 006505 123 QRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKEL-GLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKV 201 (643)
Q Consensus 123 Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l-gl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~i 201 (643)
|++.+++.+|++||+.+...... ..+.++++.++++.+ ++.+.. +..++.||||||||++||++|+.+|++
T Consensus 82 q~~~~~~~~t~~~~l~~~~~~~~---~~~~~~~~~~~l~~~~~l~~~~-----~~~~~~LS~G~~qrv~laral~~~p~l 153 (222)
T cd03224 82 EGRRIFPELTVEENLLLGAYARR---RAKRKARLERVYELFPRLKERR-----KQLAGTLSGGEQQMLAIARALMSRPKL 153 (222)
T ss_pred cccccCCCCcHHHHHHHHhhhcC---chhHHHHHHHHHHHHHhhhhhh-----hCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999998754331 223345677888888 466555 346789999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 202 LILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 202 lllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
++|||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.+++|++++|++|+++..|+++++.
T Consensus 154 lllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 154 LLLDEPSEGLAPKIVEEIFEAIRELRD-EGVTILLVEQNAR-FALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred EEECCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHH-HHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 999999999999999999999999987 4899999999997 588999999999999999999887653
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-45 Score=366.82 Aligned_cols=206 Identities=30% Similarity=0.546 Sum_probs=183.8
Q ss_pred hcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc-hhhcccEEEEccCC
Q 006505 47 KLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-AQFRKVSGYVTQRD 125 (643)
Q Consensus 47 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~-~~~~~~i~yv~Q~~ 125 (643)
++++++++|+++++|+|+||++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++.. ...++.++|++|++
T Consensus 2 ~~~~l~~~~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~ 81 (208)
T cd03268 2 KTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEAP 81 (208)
T ss_pred EEEEEEEEECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCCC
Confidence 46788889988899999999999999999999999999999999999999999999999998743 34567799999999
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q 006505 126 TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILD 205 (643)
Q Consensus 126 ~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlD 205 (643)
.+++.+||+||+.+....+. . .+++++++++.+++++..++ .+++|||||||||+||++|+.+|++++||
T Consensus 82 ~~~~~~tv~e~l~~~~~~~~-~----~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~la~al~~~p~llllD 151 (208)
T cd03268 82 GFYPNLTARENLRLLARLLG-I----RKKRIDEVLDVVGLKDSAKK-----KVKGFSLGMKQRLGIALALLGNPDLLILD 151 (208)
T ss_pred ccCccCcHHHHHHHHHHhcC-C----cHHHHHHHHHHcCCHHHHhh-----hHhhCCHHHHHHHHHHHHHhcCCCEEEEC
Confidence 99999999999988764321 1 23567889999999877644 56799999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEec
Q 006505 206 EPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHG 264 (643)
Q Consensus 206 EPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 264 (643)
|||+|||+.++..+.+.|+++++ .|+|||++|||++ ++.+++|++++|++|++++.|
T Consensus 152 EPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~~-~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 152 EPTNGLDPDGIKELRELILSLRD-QGITVLISSHLLS-EIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEcCCHH-HHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999987 5899999999997 477899999999999998765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-45 Score=380.20 Aligned_cols=218 Identities=28% Similarity=0.435 Sum_probs=192.1
Q ss_pred hhhcccccccccc---cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccE
Q 006505 45 LSKLEEAADSDGV---RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVS 118 (643)
Q Consensus 45 ~~~~~~~~~~~~~---~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i 118 (643)
+++++++++.|++ +.+|+|+|++|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ...++.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 4678899998863 469999999999999999999999999999999999999999999999998743 3456789
Q ss_pred EEEccCC-CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhc
Q 006505 119 GYVTQRD-TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIH 197 (643)
Q Consensus 119 ~yv~Q~~-~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~ 197 (643)
+|++|++ .+++..||+||+.|..... ..+.++..++++++++.+||++.. ++.+..||||||||++||+||+.
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~-----~~~~~~LSgGq~qrv~lAral~~ 157 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENK-GIPHEEMKERVNEALELVGMQDFK-----EREPARLSGGQKQRVAIAGAVAM 157 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhC-CCCHHHHHHHHHHHHHHCCCHhHh-----hCCcccCCHHHHHHHHHHHHHHc
Confidence 9999997 4677789999999875432 234556667899999999998766 44678999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 198 DPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 198 ~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
+|++|+|||||+|||+.++..+++.|++++++.|+|||++||+++ ++ ..+|++++|++|+++..|++++..
T Consensus 158 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~-~~-~~~dri~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13650 158 RPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLD-EV-ALSDRVLVMKNGQVESTSTPRELF 228 (279)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999998756999999999997 45 689999999999999999998765
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-45 Score=371.04 Aligned_cols=214 Identities=29% Similarity=0.491 Sum_probs=185.9
Q ss_pred hhhcccccccccc----cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCch------hh
Q 006505 45 LSKLEEAADSDGV----RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKA------QF 114 (643)
Q Consensus 45 ~~~~~~~~~~~~~----~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~------~~ 114 (643)
++++++++++|+. +++|+|+|+++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++... ..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 5678899988864 5799999999999999999999999999999999999999999999999887431 12
Q ss_pred -cccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHH
Q 006505 115 -RKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGF 193 (643)
Q Consensus 115 -~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~ 193 (643)
++.++|++|++.+++.+|++||+.+..... ....++.+++++++++.+|+++..+ +.+.+||||||||++||+
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~~~~-----~~~~~LSgG~~qrl~la~ 158 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIG-KKKPAEINSRALEMLAAVGLEHRAN-----HRPSELSGGERQRVAIAR 158 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCchhhh-----CChhhCCHHHHHHHHHHH
Confidence 257999999999999999999999875432 2234455677899999999987663 466899999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecCh
Q 006505 194 DVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTV 266 (643)
Q Consensus 194 aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 266 (643)
+|+.+|++|||||||+|||+.++..+.+.|++++++.|+|||++||+++. +.. +|++++|++|+++..|+.
T Consensus 159 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~-~~~-~~~~~~l~~G~i~~~~~~ 229 (233)
T PRK11629 159 ALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQL-AKR-MSRQLEMRDGRLTAELSL 229 (233)
T ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHh-hCEEEEEECCEEEEEecc
Confidence 99999999999999999999999999999999976558999999999973 554 689999999999988864
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-45 Score=365.93 Aligned_cols=202 Identities=32% Similarity=0.503 Sum_probs=177.5
Q ss_pred cccccccccc-cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEccCCC
Q 006505 48 LEEAADSDGV-RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDT 126 (643)
Q Consensus 48 ~~~~~~~~~~-~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~ 126 (643)
++|++++|++ +++|+|+|+++++||+++|+|||||||||||++|+|+.+|++|+|.++|+++.....++.++|++|++.
T Consensus 2 ~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~ 81 (205)
T cd03226 2 IENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVD 81 (205)
T ss_pred cccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChh
Confidence 5678888887 789999999999999999999999999999999999999999999999998754455678999999974
Q ss_pred -CCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q 006505 127 -LFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILD 205 (643)
Q Consensus 127 -l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlD 205 (643)
.+..+|++||+.+..... . . ..+++.++++.+|+.+.. ++.+.+||||||||++||+||+.+|++++||
T Consensus 82 ~~~~~~tv~e~l~~~~~~~-~--~--~~~~~~~~l~~~~l~~~~-----~~~~~~LS~G~~qrv~laral~~~p~llllD 151 (205)
T cd03226 82 YQLFTDSVREELLLGLKEL-D--A--GNEQAETVLKDLDLYALK-----ERHPLSLSGGQKQRLAIAAALLSGKDLLIFD 151 (205)
T ss_pred hhhhhccHHHHHhhhhhhc-C--c--cHHHHHHHHHHcCCchhc-----CCCchhCCHHHHHHHHHHHHHHhCCCEEEEe
Confidence 344579999998765322 1 1 135688999999998766 4467899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEE
Q 006505 206 EPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVL 261 (643)
Q Consensus 206 EPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv 261 (643)
|||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+++|++++|++|+++
T Consensus 152 EPt~~LD~~~~~~l~~~l~~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 152 EPTSGLDYKNMERVGELIRELAAQ-GKAVIVITHDYE-FLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEC
Confidence 999999999999999999999864 999999999997 578899999999999874
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-45 Score=373.81 Aligned_cols=218 Identities=28% Similarity=0.450 Sum_probs=191.7
Q ss_pred hcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---------------
Q 006505 47 KLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK--------------- 111 (643)
Q Consensus 47 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~--------------- 111 (643)
+++++++.|+++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++..
T Consensus 2 ~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~ 81 (252)
T TIGR03005 2 RFSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKH 81 (252)
T ss_pred EEEEEEEEeCCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhH
Confidence 46788899988899999999999999999999999999999999999999999999999987632
Q ss_pred -hhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHH
Q 006505 112 -AQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVS 190 (643)
Q Consensus 112 -~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ 190 (643)
..+++.++|++|++.+++..|+.||+.++.........++.++++.++++.+|+.+.. ++.+.+||||||||++
T Consensus 82 ~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----~~~~~~LS~G~~qrv~ 156 (252)
T TIGR03005 82 LRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKA-----DHMPAQLSGGQQQRVA 156 (252)
T ss_pred HHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHh-----hcChhhcCHHHHHHHH
Confidence 1346789999999999999999999987543211223445566789999999998766 3467899999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 191 IGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 191 ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
||++|+.+|++++|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|++++.|+++++.
T Consensus 157 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T TIGR03005 157 IARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG-FAREFADRVCFFDKGRIVEQGKPDEIF 235 (252)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999999999998756899999999997 578899999999999999999987663
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-45 Score=373.02 Aligned_cols=216 Identities=24% Similarity=0.418 Sum_probs=190.4
Q ss_pred hhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCC-----ccEEEECCCcCCc-----hhhc
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQ-----SGSTFVNGSPIDK-----AQFR 115 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~-----~G~I~~~g~~~~~-----~~~~ 115 (643)
+++++++++|+++.+++|+|+++++||+++|+||||||||||+|+|+|+.+|+ +|+|.++|+++.. ...+
T Consensus 2 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 81 (247)
T TIGR00972 2 IEIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELR 81 (247)
T ss_pred EEEEEEEEEECCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHH
Confidence 45788999998888999999999999999999999999999999999999988 9999999998742 2356
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCh----hhhhhhcCCCcCCCCCHHHHHHHHH
Q 006505 116 KVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLE----HVAMARVGDDRVRGISGGERRRVSI 191 (643)
Q Consensus 116 ~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~----~~~~~~vg~~~~~~LSGGerqRv~i 191 (643)
+.++|++|++.+++ +|++||+.+....+...+.++.+++++++++.+|+. +.. ++.+++||||||||++|
T Consensus 82 ~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~~~~LSgG~~qrv~l 155 (247)
T TIGR00972 82 RRVGMVFQKPNPFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRL-----HDSALGLSGGQQQRLCI 155 (247)
T ss_pred hheEEEecCcccCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHh-----hCCcccCCHHHHHHHHH
Confidence 78999999998888 899999998765432123455567789999999997 444 44678999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 192 GFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 192 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
|++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+++|++++|++|++++.|+++++.
T Consensus 156 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 156 ARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK--KYTIVIVTHNMQ-QAARISDRTAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--cCeEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999999999999999976 489999999997 588999999999999999999988763
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-45 Score=374.74 Aligned_cols=220 Identities=29% Similarity=0.443 Sum_probs=192.4
Q ss_pred hhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc-------------
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK------------- 111 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~------------- 111 (643)
.+++++++++|+++++|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++..
T Consensus 5 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 84 (257)
T PRK10619 5 KLNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADK 84 (257)
T ss_pred cEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccc
Confidence 3678999999988899999999999999999999999999999999999999999999999987631
Q ss_pred ---hhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHH
Q 006505 112 ---AQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRR 188 (643)
Q Consensus 112 ---~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqR 188 (643)
..+++.++|++|++.+++.+||+||+.++.........++.++++.++++.+|+.+... ++.+.+||||||||
T Consensus 85 ~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~----~~~~~~LS~G~~qr 160 (257)
T PRK10619 85 NQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQ----GKYPVHLSGGQQQR 160 (257)
T ss_pred hHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhh----hCCcccCCHHHHHH
Confidence 23467899999999999999999999875421112234555678899999999976431 34678999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhH
Q 006505 189 VSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDL 268 (643)
Q Consensus 189 v~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 268 (643)
++||+||+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.++||++++|++|++++.|++++
T Consensus 161 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~-g~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 238 (257)
T PRK10619 161 VSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMG-FARHVSSHVIFLHQGKIEEEGAPEQ 238 (257)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999874 999999999997 5788999999999999999999877
Q ss_pred HH
Q 006505 269 LS 270 (643)
Q Consensus 269 ~~ 270 (643)
..
T Consensus 239 ~~ 240 (257)
T PRK10619 239 LF 240 (257)
T ss_pred hh
Confidence 53
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-45 Score=368.39 Aligned_cols=213 Identities=33% Similarity=0.477 Sum_probs=181.2
Q ss_pred hhccccccccccc----ceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc------hhhc
Q 006505 46 SKLEEAADSDGVR----RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK------AQFR 115 (643)
Q Consensus 46 ~~~~~~~~~~~~~----~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~------~~~~ 115 (643)
+++++++++|+++ ++|+|+|+++++||+++|+|||||||||||++|+|+.+|++|+|.++|+++.. ..++
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 4578888888765 79999999999999999999999999999999999999999999999988743 2356
Q ss_pred ccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCHHHHHHH-HHHHHHHcCCh-hhhhhhcCCCcCCCCCHHHHHHHHH
Q 006505 116 KVSGYVTQRD--TLFPLLTVEETLMFSAKLRLRLPQAQLRAR-VKSLVKELGLE-HVAMARVGDDRVRGISGGERRRVSI 191 (643)
Q Consensus 116 ~~i~yv~Q~~--~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~-v~~~l~~lgl~-~~~~~~vg~~~~~~LSGGerqRv~i 191 (643)
+.++|++|++ .+++.+||+||+.+..........++..+. ++++++.+++. +.. +..+..||||||||++|
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~LS~G~~qrv~l 156 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVL-----NRYPHELSGGQRQRVAI 156 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHh-----hCCchhcCHHHHHHHHH
Confidence 7899999998 467789999999886544322122222223 36889999995 444 44678999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEec
Q 006505 192 GFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHG 264 (643)
Q Consensus 192 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 264 (643)
|++|+.+|++|||||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|+++..|
T Consensus 157 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 157 ARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEeCCEEEecC
Confidence 999999999999999999999999999999999998755899999999997 577899999999999998754
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-45 Score=394.22 Aligned_cols=218 Identities=27% Similarity=0.426 Sum_probs=193.6
Q ss_pred hhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hh----hcccE
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQ----FRKVS 118 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~----~~~~i 118 (643)
+..+++.+.|+...+|+|+||++++||+++|+||||||||||||+|+|+++|++|+|.++|+++.. .. .++.+
T Consensus 29 ~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~i 108 (400)
T PRK10070 29 LSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKI 108 (400)
T ss_pred ccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCE
Confidence 455667778888889999999999999999999999999999999999999999999999998743 11 23579
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcC
Q 006505 119 GYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHD 198 (643)
Q Consensus 119 ~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~ 198 (643)
+||+|++.+++.+||+||+.+....+ ..+.++.++++.++++.+||++.. ++++++|||||||||+|||||+.+
T Consensus 109 gyv~Q~~~l~~~~Tv~enl~~~~~~~-~~~~~~~~~~~~e~L~~~gL~~~~-----~~~~~~LSgGq~QRv~LArAL~~~ 182 (400)
T PRK10070 109 AMVFQSFALMPHMTVLDNTAFGMELA-GINAEERREKALDALRQVGLENYA-----HSYPDELSGGMRQRVGLARALAIN 182 (400)
T ss_pred EEEECCCcCCCCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCChhh-----hcCcccCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999986543 234455567889999999998766 447789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 199 PKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 199 p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
|++|||||||+|||+.++..+.+.|++++++.|+|||++|||++ ++.+++|++++|++|+++..|+++++.
T Consensus 183 P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~-~~~~~~Dri~vL~~G~i~~~g~~~~l~ 253 (400)
T PRK10070 183 PDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD-EAMRIGDRIAIMQNGEVVQVGTPDEIL 253 (400)
T ss_pred CCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH-HHHHhCCEEEEEECCEEEecCCHHHHH
Confidence 99999999999999999999999999998766899999999997 588999999999999999999988764
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-45 Score=385.89 Aligned_cols=222 Identities=25% Similarity=0.379 Sum_probs=195.5
Q ss_pred hhhhccccccccc----------ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc--
Q 006505 44 ELSKLEEAADSDG----------VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-- 111 (643)
Q Consensus 44 ~~~~~~~~~~~~~----------~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~-- 111 (643)
++++++|+++.|+ .+.+|+|||++|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++..
T Consensus 4 ~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~ 83 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKAD 83 (327)
T ss_pred ceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCC
Confidence 4577889988885 2579999999999999999999999999999999999999999999999998743
Q ss_pred ----hhhcccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChh-hhhhhcCCCcCCCCCHH
Q 006505 112 ----AQFRKVSGYVTQRD--TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEH-VAMARVGDDRVRGISGG 184 (643)
Q Consensus 112 ----~~~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~-~~~~~vg~~~~~~LSGG 184 (643)
..+++.++||+|++ .+.|.+|+.+++...........+++.++++.++++.+||.+ .. +.++++||||
T Consensus 84 ~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----~~~p~~LSgG 158 (327)
T PRK11308 84 PEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHY-----DRYPHMFSGG 158 (327)
T ss_pred HHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHh-----cCCCccCCHH
Confidence 23567899999997 589999999999876654322345566778999999999963 33 5578999999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEec
Q 006505 185 ERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHG 264 (643)
Q Consensus 185 erqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 264 (643)
|||||+||+||+.+|++|++||||+|||..++.+++++|++++++.|.|+|++|||++ .+.+++|+|++|++|++++.|
T Consensus 159 q~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~adrv~vm~~G~ive~g 237 (327)
T PRK11308 159 QRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS-VVEHIADEVMVMYLGRCVEKG 237 (327)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEC
Confidence 9999999999999999999999999999999999999999998867999999999997 477899999999999999999
Q ss_pred ChhHHHH
Q 006505 265 TVDLLSV 271 (643)
Q Consensus 265 ~~~~~~~ 271 (643)
+++++.+
T Consensus 238 ~~~~~~~ 244 (327)
T PRK11308 238 TKEQIFN 244 (327)
T ss_pred CHHHHhc
Confidence 9988753
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-43 Score=428.73 Aligned_cols=222 Identities=30% Similarity=0.467 Sum_probs=200.2
Q ss_pred hhhhccccccccc--ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc--hhhcccEE
Q 006505 44 ELSKLEEAADSDG--VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK--AQFRKVSG 119 (643)
Q Consensus 44 ~~~~~~~~~~~~~--~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~--~~~~~~i~ 119 (643)
..+++++++++|+ ++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++.. ...|+.+|
T Consensus 927 ~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG 1006 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLG 1006 (2272)
T ss_pred ceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEE
Confidence 4678999999995 5789999999999999999999999999999999999999999999999998753 34677899
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCC
Q 006505 120 YVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDP 199 (643)
Q Consensus 120 yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p 199 (643)
|++|++.+++.+||+||+.|.++++. .+.++.+++++++++.+||++.. ++.+++|||||||||+||+||+.+|
T Consensus 1007 ~~pQ~~~L~~~LTV~E~L~f~~~lkg-~~~~~~~~~v~~lL~~vgL~~~~-----~~~~~~LSGGqKQRLsLArALi~~P 1080 (2272)
T TIGR01257 1007 MCPQHNILFHHLTVAEHILFYAQLKG-RSWEEAQLEMEAMLEDTGLHHKR-----NEEAQDLSGGMQRKLSVAIAFVGDA 1080 (2272)
T ss_pred EEecCCcCCCCCCHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHcCCchhh-----cCChhhCCHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999877652 34455567899999999998776 4467899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHHHHH
Q 006505 200 KVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSVSLR 274 (643)
Q Consensus 200 ~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~ 274 (643)
++++|||||+|||+.++..+.++|++++ + |+|||++||+++ ++..++|||++|++|+++..|+++++.+.+.
T Consensus 1081 kVLLLDEPTSGLDp~sr~~l~~lL~~l~-~-g~TIIltTHdmd-ea~~laDrI~iL~~GkL~~~Gs~~~Lk~~~g 1152 (2272)
T TIGR01257 1081 KVVVLDEPTSGVDPYSRRSIWDLLLKYR-S-GRTIIMSTHHMD-EADLLGDRIAIISQGRLYCSGTPLFLKNCFG 1152 (2272)
T ss_pred CEEEEECCCcCCCHHHHHHHHHHHHHHh-C-CCEEEEEECCHH-HHHHhCCEEEEEECCEEEEecCHHHHHHhcC
Confidence 9999999999999999999999999994 3 899999999997 5888999999999999999999999876653
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-45 Score=373.83 Aligned_cols=213 Identities=27% Similarity=0.467 Sum_probs=188.1
Q ss_pred hhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEccCC
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRD 125 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~ 125 (643)
+++++++++|+++.+|+|+|+++++||+++|+|||||||||||++|+|+.+|++|+|.++|+++.. .++.++|++|++
T Consensus 2 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~--~~~~~~~v~q~~ 79 (255)
T PRK11248 2 LQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEG--PGAERGVVFQNE 79 (255)
T ss_pred EEEEEEEEEeCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCC--CCCcEEEEeCCC
Confidence 467899999988889999999999999999999999999999999999999999999999998743 234689999999
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q 006505 126 TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILD 205 (643)
Q Consensus 126 ~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlD 205 (643)
.+++.+||+||+.+....+ ....++.++++.++++.+|+.+..+ +.+.+||||||||++||++|+.+|++||||
T Consensus 80 ~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~~~~-----~~~~~LSgGq~qrl~laral~~~p~lllLD 153 (255)
T PRK11248 80 GLLPWRNVQDNVAFGLQLA-GVEKMQRLEIAHQMLKKVGLEGAEK-----RYIWQLSGGQRQRVGIARALAANPQLLLLD 153 (255)
T ss_pred ccCCCCcHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHcCChhHhh-----CChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9999999999998865433 2234445667899999999987663 467899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEe--CCeEEEecChh
Q 006505 206 EPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLA--NGSVLHHGTVD 267 (643)
Q Consensus 206 EPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~--~G~iv~~G~~~ 267 (643)
|||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|+ +|+++..++.+
T Consensus 154 EPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 154 EPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIE-EAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 9999999999999999999986655899999999997 5889999999998 59999887654
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-45 Score=378.53 Aligned_cols=221 Identities=32% Similarity=0.504 Sum_probs=193.5
Q ss_pred hhhhccccccccc-ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCC-----chhhccc
Q 006505 44 ELSKLEEAADSDG-VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPID-----KAQFRKV 117 (643)
Q Consensus 44 ~~~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~-----~~~~~~~ 117 (643)
++++++|++++|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++. ...+++.
T Consensus 4 ~~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ 83 (283)
T PRK13636 4 YILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRES 83 (283)
T ss_pred ceEEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhh
Confidence 3577899999996 578999999999999999999999999999999999999999999999998873 1346678
Q ss_pred EEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHh
Q 006505 118 SGYVTQRDT-LFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVI 196 (643)
Q Consensus 118 i~yv~Q~~~-l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~ 196 (643)
++|++|++. .+...||+||+.+..... ..+.++.+++++++++.+||.+.. ++.++.||||||||++||+||+
T Consensus 84 ig~v~q~~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~-----~~~~~~LS~G~~qrl~laraL~ 157 (283)
T PRK13636 84 VGMVFQDPDNQLFSASVYQDVSFGAVNL-KLPEDEVRKRVDNALKRTGIEHLK-----DKPTHCLSFGQKKRVAIAGVLV 157 (283)
T ss_pred EEEEecCcchhhccccHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHCCChhhh-----hCCcccCCHHHHHHHHHHHHHH
Confidence 999999973 234479999998865432 234555567889999999998766 4577899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 197 HDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 197 ~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
.+|++|+|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.++||++++|++|++++.|+++++..
T Consensus 158 ~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~-~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 158 MEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID-IVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999998766899999999997 4778999999999999999999988753
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-45 Score=365.31 Aligned_cols=206 Identities=32% Similarity=0.529 Sum_probs=181.6
Q ss_pred hhcccccccc-cccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc------hhhcccE
Q 006505 46 SKLEEAADSD-GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK------AQFRKVS 118 (643)
Q Consensus 46 ~~~~~~~~~~-~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~------~~~~~~i 118 (643)
+++++++++| +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ..+++.+
T Consensus 2 l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 81 (214)
T TIGR02673 2 IEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRI 81 (214)
T ss_pred EEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhhe
Confidence 4578888888 46789999999999999999999999999999999999999999999999988743 1356789
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcC
Q 006505 119 GYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHD 198 (643)
Q Consensus 119 ~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~ 198 (643)
+|++|++.+++.+|++||+.+....+ ....+..+++++++++.+|+.+..+ +.+..||||||||++||++|+.+
T Consensus 82 ~~~~q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrl~la~al~~~ 155 (214)
T TIGR02673 82 GVVFQDFRLLPDRTVYENVALPLEVR-GKKEREIQRRVGAALRQVGLEHKAD-----AFPEQLSGGEQQRVAIARAIVNS 155 (214)
T ss_pred EEEecChhhccCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCChhhhh-----CChhhCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999875533 1233445567899999999987653 46679999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCe
Q 006505 199 PKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGS 259 (643)
Q Consensus 199 p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 259 (643)
|++++|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+++|++++|++|+
T Consensus 156 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~~tH~~~-~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 156 PPLLLADEPTGNLDPDLSERILDLLKRLNKR-GTTVIVATHDLS-LVDRVAHRVIILDDGR 214 (214)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHH-HHHHhcCEEEEecCCC
Confidence 9999999999999999999999999999764 899999999997 5888999999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-45 Score=364.94 Aligned_cols=207 Identities=31% Similarity=0.514 Sum_probs=182.6
Q ss_pred hcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc-----hhhcccEEEE
Q 006505 47 KLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-----AQFRKVSGYV 121 (643)
Q Consensus 47 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~-----~~~~~~i~yv 121 (643)
++++++++|+++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++.. ..+++.++|+
T Consensus 2 ~~~~l~~~~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~ 81 (213)
T cd03262 2 EIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMV 81 (213)
T ss_pred EEEEEEEEECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEE
Confidence 46788899988899999999999999999999999999999999999999999999999988732 2456789999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCE
Q 006505 122 TQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKV 201 (643)
Q Consensus 122 ~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~i 201 (643)
+|++.+++.+|++||+.+..........++.+++++++++.+|+.+..++ .+.+||||||||++||++|+.+|++
T Consensus 82 ~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~la~al~~~p~l 156 (213)
T cd03262 82 FQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADA-----YPAQLSGGQQQRVAIARALAMNPKV 156 (213)
T ss_pred ecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhh-----CccccCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999998864321122344456678999999999876644 6789999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeE
Q 006505 202 LILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSV 260 (643)
Q Consensus 202 lllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 260 (643)
++|||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.+++|++++|++|++
T Consensus 157 lllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tvi~~sh~~~-~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 157 MLFDEPTSALDPELVGEVLDVMKDLAE-EGMTMVVVTHEMG-FAREVADRVIFMDDGRI 213 (213)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999987 4899999999997 58889999999999974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-45 Score=382.33 Aligned_cols=227 Identities=24% Similarity=0.417 Sum_probs=193.2
Q ss_pred hhccccccccccc-----ceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCC----------
Q 006505 46 SKLEEAADSDGVR-----RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPID---------- 110 (643)
Q Consensus 46 ~~~~~~~~~~~~~-----~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~---------- 110 (643)
++++|+++.|+.+ .+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|+++|++..
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence 4678888888643 5999999999999999999999999999999999999999999999987541
Q ss_pred -----------------chhhcccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCh-hhhh
Q 006505 111 -----------------KAQFRKVSGYVTQRD--TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLE-HVAM 170 (643)
Q Consensus 111 -----------------~~~~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~-~~~~ 170 (643)
...+++.+|||+|++ .++ ..||+||+.|+.... ..++++.++++.++++.+||. +..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~-~~tv~e~i~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~- 159 (305)
T PRK13651 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLF-EQTIEKDIIFGPVSM-GVSKEEAKKRAAKYIELVGLDESYL- 159 (305)
T ss_pred cccccccccccccccchHHHHHhceEEEeeCcccccc-cccHHHHHHhhHHHc-CCCHHHHHHHHHHHHHHcCCChhhh-
Confidence 124567899999985 344 469999999876432 345666677899999999996 555
Q ss_pred hhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcC
Q 006505 171 ARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFN 250 (643)
Q Consensus 171 ~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D 250 (643)
++++..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++|||++ .+.+++|
T Consensus 160 ----~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiiivtHd~~-~~~~~ad 233 (305)
T PRK13651 160 ----QRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK-QGKTIILVTHDLD-NVLEWTK 233 (305)
T ss_pred ----hCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeeCHH-HHHHhCC
Confidence 457789999999999999999999999999999999999999999999999986 4999999999997 4889999
Q ss_pred EEEEEeCCeEEEecChhHHHH---HHHHcCCCCC
Q 006505 251 SILMLANGSVLHHGTVDLLSV---SLRMMGLQLP 281 (643)
Q Consensus 251 ~v~~L~~G~iv~~G~~~~~~~---~f~~~g~~~p 281 (643)
+|++|++|++++.|+++++.. .+...|...|
T Consensus 234 rv~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p 267 (305)
T PRK13651 234 RTIFFKDGKIIKDGDTYDILSDNKFLIENNMEPP 267 (305)
T ss_pred EEEEEECCEEEEECCHHHHhcCHHHHHHCCCCCC
Confidence 999999999999999988753 2334455433
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-45 Score=379.61 Aligned_cols=218 Identities=26% Similarity=0.443 Sum_probs=190.4
Q ss_pred hhcccccccccc-----cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc-------hh
Q 006505 46 SKLEEAADSDGV-----RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-------AQ 113 (643)
Q Consensus 46 ~~~~~~~~~~~~-----~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~-------~~ 113 (643)
++++++++.|+. +.+|+|||++|++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++.. ..
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 457888888863 469999999999999999999999999999999999999999999999988742 24
Q ss_pred hcccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCh-hhhhhhcCCCcCCCCCHHHHHHHH
Q 006505 114 FRKVSGYVTQRD--TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLE-HVAMARVGDDRVRGISGGERRRVS 190 (643)
Q Consensus 114 ~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~-~~~~~~vg~~~~~~LSGGerqRv~ 190 (643)
+++.+|||+|++ .+++ .||.||+.|..... ..+.++..++++++++.+||. +.. ++.++.||||||||++
T Consensus 83 ~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~-----~~~~~~LSgGq~qrv~ 155 (286)
T PRK13646 83 VRKRIGMVFQFPESQLFE-DTVEREIIFGPKNF-KMNLDEVKNYAHRLLMDLGFSRDVM-----SQSPFQMSGGQMRKIA 155 (286)
T ss_pred HHhheEEEecChHhccch-hhHHHHHHhhHHHc-CCCHHHHHHHHHHHHHHcCCChhhh-----hCCcccCCHHHHHHHH
Confidence 677899999986 4666 49999999875432 234556667899999999996 455 3467899999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 191 IGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 191 ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
||++|+.+|++++|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|++++.|+++++.
T Consensus 156 laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dri~~l~~G~i~~~g~~~~~~ 234 (286)
T PRK13646 156 IVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVMKEGSIVSQTSPKELF 234 (286)
T ss_pred HHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999999998756999999999997 478899999999999999999998864
Q ss_pred H
Q 006505 271 V 271 (643)
Q Consensus 271 ~ 271 (643)
+
T Consensus 235 ~ 235 (286)
T PRK13646 235 K 235 (286)
T ss_pred h
Confidence 3
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-45 Score=370.85 Aligned_cols=216 Identities=29% Similarity=0.465 Sum_probs=189.4
Q ss_pred hhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---h-hhcccEEE
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---A-QFRKVSGY 120 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~-~~~~~i~y 120 (643)
++++++++++|+.+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. . ..++.++|
T Consensus 5 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 84 (237)
T PRK11614 5 MLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAI 84 (237)
T ss_pred EEEEEeEEEeeCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEE
Confidence 5678999999988899999999999999999999999999999999999999999999999988743 1 24667999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc-CChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCC
Q 006505 121 VTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKEL-GLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDP 199 (643)
Q Consensus 121 v~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l-gl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p 199 (643)
++|++.+++.+||.||+.++.... ..++..++++++++.+ ++.+..+ .++..||||||||++||++|+.+|
T Consensus 85 ~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~l~~~~~l~~~~~-----~~~~~LS~G~~qrl~la~al~~~p 156 (237)
T PRK11614 85 VPEGRRVFSRMTVEENLAMGGFFA---ERDQFQERIKWVYELFPRLHERRI-----QRAGTMSGGEQQMLAIGRALMSQP 156 (237)
T ss_pred eccCcccCCCCcHHHHHHHhhhcc---ChhHHHHHHHHHHHHHHHHHHHHh-----CchhhCCHHHHHHHHHHHHHHhCC
Confidence 999999999999999998864321 2233345677788887 4765543 367899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 200 KVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 200 ~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
++++|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+++|++++|++|++++.|+++++.
T Consensus 157 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (237)
T PRK11614 157 RLLLLDEPSLGLAPIIIQQIFDTIEQLREQ-GMTIFLVEQNAN-QALKLADRGYVLENGHVVLEDTGDALL 225 (237)
T ss_pred CEEEEcCccccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCcHH-HHHhhCCEEEEEeCCEEEeeCCHHHHh
Confidence 999999999999999999999999999874 999999999997 588999999999999999999988774
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-45 Score=370.98 Aligned_cols=216 Identities=31% Similarity=0.475 Sum_probs=189.3
Q ss_pred hhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCC---------chhhcc
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPID---------KAQFRK 116 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~---------~~~~~~ 116 (643)
+++++++++|+++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++. ....++
T Consensus 3 l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 82 (242)
T PRK11124 3 IQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRR 82 (242)
T ss_pred EEEEeeEEEECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHh
Confidence 45788999998889999999999999999999999999999999999999999999999998762 123467
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHH-HHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHH
Q 006505 117 VSGYVTQRDTLFPLLTVEETLMFS-AKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDV 195 (643)
Q Consensus 117 ~i~yv~Q~~~l~~~lTv~E~l~~~-~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL 195 (643)
.++|++|++.+++.+||.||+.+. .... +...++..+++.++++.+|+++..+ +.++.||||||||++||++|
T Consensus 83 ~i~~~~q~~~~~~~~tv~e~i~~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~~~~-----~~~~~LS~G~~qrv~laral 156 (242)
T PRK11124 83 NVGMVFQQYNLWPHLTVQQNLIEAPCRVL-GLSKDQALARAEKLLERLRLKPYAD-----RFPLHLSGGQQQRVAIARAL 156 (242)
T ss_pred heEEEecCccccCCCcHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCChhhhh-----CChhhCCHHHHHHHHHHHHH
Confidence 899999999999999999999753 2222 2234445567899999999987664 46789999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHH
Q 006505 196 IHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLL 269 (643)
Q Consensus 196 ~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 269 (643)
+.+|++++|||||+|||+.++..+.+.|+++++ .|+|+|++||+++ ++.+++|++++|++|++++.|++++.
T Consensus 157 ~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 157 MMEPQVLLFDEPTAALDPEITAQIVSIIRELAE-TGITQVIVTHEVE-VARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred hcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHHh
Confidence 999999999999999999999999999999976 4999999999997 57789999999999999999987754
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=383.31 Aligned_cols=231 Identities=23% Similarity=0.395 Sum_probs=196.7
Q ss_pred hhhhhhcccccccccc-----cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc-----
Q 006505 42 QEELSKLEEAADSDGV-----RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK----- 111 (643)
Q Consensus 42 ~~~~~~~~~~~~~~~~-----~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~----- 111 (643)
..++++++++++.|+. +++|+|||+++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++..
T Consensus 18 ~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~ 97 (320)
T PRK13631 18 DDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNH 97 (320)
T ss_pred CCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccc
Confidence 3356889999999864 369999999999999999999999999999999999999999999999977532
Q ss_pred --------------hhhcccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCh-hhhhhhcC
Q 006505 112 --------------AQFRKVSGYVTQRD--TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLE-HVAMARVG 174 (643)
Q Consensus 112 --------------~~~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~-~~~~~~vg 174 (643)
..+++.++||+|++ .+++. ||+||+.|+.... ..+.++..+++.++++.+||. +..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~-tv~eni~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~----- 170 (320)
T PRK13631 98 ELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKD-TIEKDIMFGPVAL-GVKKSEAKKLAKFYLNKMGLDDSYL----- 170 (320)
T ss_pred cccccccccccchHHHHHhcEEEEEECchhccccc-hHHHHHHhhHHhc-CCCHHHHHHHHHHHHHHcCCChhHh-----
Confidence 24577899999986 56764 9999998875422 234555667889999999996 444
Q ss_pred CCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEE
Q 006505 175 DDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILM 254 (643)
Q Consensus 175 ~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~ 254 (643)
++.+.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+++|++++
T Consensus 171 ~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~-g~TiiivtHd~~-~~~~~adri~v 248 (320)
T PRK13631 171 ERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKAN-NKTVFVITHTME-HVLEVADEVIV 248 (320)
T ss_pred cCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHH-HHHHhCCEEEE
Confidence 4567899999999999999999999999999999999999999999999999864 999999999997 47889999999
Q ss_pred EeCCeEEEecChhHHHH---HHHHcCCCCC
Q 006505 255 LANGSVLHHGTVDLLSV---SLRMMGLQLP 281 (643)
Q Consensus 255 L~~G~iv~~G~~~~~~~---~f~~~g~~~p 281 (643)
|++|+++..|+++++.+ .+...|+..|
T Consensus 249 l~~G~i~~~g~~~~~~~~~~~~~~~~~~~p 278 (320)
T PRK13631 249 MDKGKILKTGTPYEIFTDQHIINSTSIQVP 278 (320)
T ss_pred EECCEEEEeCCHHHHhcCHHHHHHcCCCCC
Confidence 99999999999988742 2344555544
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-45 Score=373.67 Aligned_cols=220 Identities=24% Similarity=0.412 Sum_probs=191.2
Q ss_pred hhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hh-hcccEEE
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQ-FRKVSGY 120 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~-~~~~i~y 120 (643)
+++++|++++|+++++|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. .. .+..++|
T Consensus 5 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 84 (255)
T PRK11300 5 LLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVR 84 (255)
T ss_pred eEEEeeEEEEECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEE
Confidence 5778999999988899999999999999999999999999999999999999999999999998743 12 2446899
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcC--------------CCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHH
Q 006505 121 VTQRDTLFPLLTVEETLMFSAKLRL--------------RLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGER 186 (643)
Q Consensus 121 v~Q~~~l~~~lTv~E~l~~~~~~~~--------------~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGer 186 (643)
++|++.+++.+||+||+.++..... ....++..+++.++++.+|+.+.. ++++++||||||
T Consensus 85 ~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----~~~~~~LS~G~~ 159 (255)
T PRK11300 85 TFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHA-----NRQAGNLAYGQQ 159 (255)
T ss_pred eccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhh-----hCChhhCCHHHH
Confidence 9999999999999999998643110 001123345688899999998766 446789999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecCh
Q 006505 187 RRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTV 266 (643)
Q Consensus 187 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 266 (643)
||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|++++.|++
T Consensus 160 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~ 238 (255)
T PRK11300 160 RRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK-LVMGISDRIYVVNQGTPLANGTP 238 (255)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEecCCH
Confidence 99999999999999999999999999999999999999998755899999999997 58899999999999999999998
Q ss_pred hHHH
Q 006505 267 DLLS 270 (643)
Q Consensus 267 ~~~~ 270 (643)
+++.
T Consensus 239 ~~~~ 242 (255)
T PRK11300 239 EEIR 242 (255)
T ss_pred HHHh
Confidence 7753
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-45 Score=363.23 Aligned_cols=208 Identities=35% Similarity=0.616 Sum_probs=184.3
Q ss_pred hcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc--hhhcccEEEEccC
Q 006505 47 KLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK--AQFRKVSGYVTQR 124 (643)
Q Consensus 47 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~--~~~~~~i~yv~Q~ 124 (643)
++++++++|+++++++|+|+++++| +++|+||||||||||+++|+|+++|++|+|.++|+++.. ..+++.++|++|+
T Consensus 2 ~~~~~~~~~~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~ 80 (211)
T cd03264 2 QLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQE 80 (211)
T ss_pred EEEEEEEEECCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecCC
Confidence 4678888998888999999999999 999999999999999999999999999999999988743 3456789999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 006505 125 DTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLIL 204 (643)
Q Consensus 125 ~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illl 204 (643)
+.+++.+||+||+.+....+ ..+.++.+++++++++.+|+.+..+ ..+..||||||||++||+||+.+|++++|
T Consensus 81 ~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv~la~al~~~p~llll 154 (211)
T cd03264 81 FGVYPNFTVREFLDYIAWLK-GIPSKEVKARVDEVLELVNLGDRAK-----KKIGSLSGGMRRRVGIAQALVGDPSILIV 154 (211)
T ss_pred CcccccCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHCCCHHHHh-----CchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999999999876543 2233444667899999999987664 46689999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEec
Q 006505 205 DEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHG 264 (643)
Q Consensus 205 DEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 264 (643)
||||+|||+.++..+.+.|+++++ +.|||++||+++ .+.+++|++++|++|++++.|
T Consensus 155 DEPt~~LD~~~~~~l~~~l~~~~~--~~tii~vsH~~~-~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 155 DEPTAGLDPEERIRFRNLLSELGE--DRIVILSTHIVE-DVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred cCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEcCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999975 589999999997 477899999999999998765
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-45 Score=363.72 Aligned_cols=206 Identities=30% Similarity=0.502 Sum_probs=181.7
Q ss_pred hcccccccccc-cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc------hhhcccEE
Q 006505 47 KLEEAADSDGV-RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK------AQFRKVSG 119 (643)
Q Consensus 47 ~~~~~~~~~~~-~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~------~~~~~~i~ 119 (643)
++++++++|++ +++|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ..+++.++
T Consensus 2 ~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~ 81 (214)
T cd03292 2 EFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIG 81 (214)
T ss_pred EEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheE
Confidence 46788888864 689999999999999999999999999999999999999999999999987742 13567899
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCC
Q 006505 120 YVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDP 199 (643)
Q Consensus 120 yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p 199 (643)
|++|++.+++.+|++||+.+....+. ...++.+++++++++.+|+++..+ +.+.+||||||||++||++|+.+|
T Consensus 82 ~v~q~~~~~~~~t~~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv~laral~~~p 155 (214)
T cd03292 82 VVFQDFRLLPDRNVYENVAFALEVTG-VPPREIRKRVPAALELVGLSHKHR-----ALPAELSGGEQQRVAIARAIVNSP 155 (214)
T ss_pred EEecCchhccCCcHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHcCCHHHhh-----CChhhcCHHHHHHHHHHHHHHcCC
Confidence 99999999999999999998765432 234455667899999999987664 466799999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeE
Q 006505 200 KVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSV 260 (643)
Q Consensus 200 ~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 260 (643)
++++|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.+++|++++|++|++
T Consensus 156 ~llllDEPt~~LD~~~~~~~~~~l~~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 156 TILIADEPTGNLDPDTTWEIMNLLKKINKA-GTTVVVATHAKE-LVDTTRHRVIALERGKL 214 (214)
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999764 899999999997 47789999999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-45 Score=373.97 Aligned_cols=210 Identities=29% Similarity=0.471 Sum_probs=187.8
Q ss_pred hhhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEc
Q 006505 43 EELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVT 122 (643)
Q Consensus 43 ~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~ 122 (643)
++.++++|++++|+++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|++|+|.++|.++. .+++.++|++
T Consensus 10 ~~~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~--~~~~~i~~v~ 87 (257)
T PRK11247 10 GTPLLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA--EAREDTRLMF 87 (257)
T ss_pred CCcEEEEEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH--HhhCceEEEe
Confidence 35678999999999889999999999999999999999999999999999999999999999998753 4567899999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEE
Q 006505 123 QRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVL 202 (643)
Q Consensus 123 Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~il 202 (643)
|++.+++.+||+||+.+... . ..++++.++++.+|+.+.. ++.+..||||||||++||++|+.+|+++
T Consensus 88 q~~~l~~~~tv~enl~~~~~-----~--~~~~~~~~~l~~~gl~~~~-----~~~~~~LSgGqkqrl~laraL~~~p~ll 155 (257)
T PRK11247 88 QDARLLPWKKVIDNVGLGLK-----G--QWRDAALQALAAVGLADRA-----NEWPAALSGGQKQRVALARALIHRPGLL 155 (257)
T ss_pred cCccCCCCCcHHHHHHhccc-----c--hHHHHHHHHHHHcCChhHh-----cCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999998999999987531 1 1245688999999998766 4467899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChh
Q 006505 203 ILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVD 267 (643)
Q Consensus 203 llDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 267 (643)
||||||+|||+.++..+.+.|++++++.|+|||++|||++ .+.+++|++++|++|++++.|+.+
T Consensus 156 lLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 156 LLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeecccc
Confidence 9999999999999999999999997656899999999997 478899999999999999988754
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-44 Score=368.87 Aligned_cols=218 Identities=28% Similarity=0.449 Sum_probs=190.3
Q ss_pred hhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---h-hhcccEEE
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---A-QFRKVSGY 120 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~-~~~~~i~y 120 (643)
++++++++++|+++++|+|+|+++++||+++|+|||||||||||++|+|+++|++|+|.++|+++.. . ..++.++|
T Consensus 2 ~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 81 (242)
T TIGR03411 2 ILYLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGR 81 (242)
T ss_pred eEEEEeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeE
Confidence 4568899999988889999999999999999999999999999999999999999999999987643 1 23456999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHH
Q 006505 121 VTQRDTLFPLLTVEETLMFSAKLRL-------RLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGF 193 (643)
Q Consensus 121 v~Q~~~l~~~lTv~E~l~~~~~~~~-------~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~ 193 (643)
++|++.+++.+||+||+.+...... ....++.+++++++++.+|+++.. ++.++.|||||||||+||+
T Consensus 82 ~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~LS~Ge~qrv~lar 156 (242)
T TIGR03411 82 KFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEA-----DRLAGLLSHGQKQWLEIGM 156 (242)
T ss_pred eccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhh-----cCChhhCCHHHHHHHHHHH
Confidence 9999999999999999988643211 012234456789999999998766 4467899999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 194 DVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 194 aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.++||++++|++|+++..|+++++.
T Consensus 157 al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~-~~~~~~d~i~~l~~g~~~~~~~~~~~~ 230 (242)
T TIGR03411 157 LLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG--KHSVVVVEHDME-FVRSIADKVTVLHQGSVLAEGSLDQVQ 230 (242)
T ss_pred HHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc--CCEEEEEECCHH-HHHHhCCEEEEEECCeEEeeCCHHHHh
Confidence 99999999999999999999999999999999974 689999999997 588899999999999999999887753
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=372.93 Aligned_cols=218 Identities=32% Similarity=0.495 Sum_probs=190.4
Q ss_pred hhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEEEEc
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGYVT 122 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~yv~ 122 (643)
+++++++++|+++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.. ...++.++|++
T Consensus 3 l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 82 (258)
T PRK13548 3 LEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLP 82 (258)
T ss_pred EEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEc
Confidence 567899999988899999999999999999999999999999999999999999999999987643 33456799999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHh------
Q 006505 123 QRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVI------ 196 (643)
Q Consensus 123 Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~------ 196 (643)
|++.+++.+||+||+.+..... ....++.+++++++++.+|+.+.. +..+.+||||||||++||++|+
T Consensus 83 q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~LSgGe~qrv~la~al~~~~~~~ 156 (258)
T PRK13548 83 QHSSLSFPFTVEEVVAMGRAPH-GLSRAEDDALVAAALAQVDLAHLA-----GRDYPQLSGGEQQRVQLARVLAQLWEPD 156 (258)
T ss_pred cCCcCCCCCCHHHHHHhhhccc-CCCcHHHHHHHHHHHHHcCCHhHh-----cCCcccCCHHHHHHHHHHHHHhcccccC
Confidence 9998888899999998864322 112233456788999999998766 4467899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 197 HDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 197 ~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
.+|++|+|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|++++.|+++++.
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (258)
T PRK13548 157 GPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADRIVLLHQGRLVADGTPAEVL 229 (258)
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhcCEEEEEECCEEEeeCCHHHHh
Confidence 5999999999999999999999999999998445899999999997 578899999999999999999987654
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-44 Score=375.71 Aligned_cols=218 Identities=27% Similarity=0.421 Sum_probs=192.0
Q ss_pred hhhcccccccccc--cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEE
Q 006505 45 LSKLEEAADSDGV--RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSG 119 (643)
Q Consensus 45 ~~~~~~~~~~~~~--~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~ 119 (643)
++++++++++|+. +++|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ...++.++
T Consensus 5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 84 (279)
T PRK13635 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVG 84 (279)
T ss_pred eEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheE
Confidence 5678999999964 579999999999999999999999999999999999999999999999998753 34567899
Q ss_pred EEccCC-CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcC
Q 006505 120 YVTQRD-TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHD 198 (643)
Q Consensus 120 yv~Q~~-~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~ 198 (643)
|++|++ .+++..||.||+.+..... ..+.++.+++++++++.+||++..+ +.+..||||||||++||++|+.+
T Consensus 85 ~~~q~~~~~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~-----~~~~~LS~G~~qrv~laral~~~ 158 (279)
T PRK13635 85 MVFQNPDNQFVGATVQDDVAFGLENI-GVPREEMVERVDQALRQVGMEDFLN-----REPHRLSGGQKQRVAIAGVLALQ 158 (279)
T ss_pred EEEeCHHHhcccccHHHHHhhhHhhC-CCCHHHHHHHHHHHHHHcCChhhhh-----CCcccCCHHHHHHHHHHHHHHcC
Confidence 999997 3666789999999875543 2344555678999999999987764 46789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 199 PKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 199 p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
|++|||||||+|||+.++..+.+.|++++++.|+|||++||+++. +. .+|++++|++|++++.|+++++.
T Consensus 159 p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~-~~-~~d~i~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13635 159 PDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDE-AA-QADRVIVMNKGEILEEGTPEEIF 228 (279)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHH-HH-cCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999999987668999999999974 54 59999999999999999988765
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-44 Score=383.43 Aligned_cols=223 Identities=26% Similarity=0.339 Sum_probs=192.4
Q ss_pred hhhcccccccccc----cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCC----CccEEEECCCcCCc---hh
Q 006505 45 LSKLEEAADSDGV----RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTP----QSGSTFVNGSPIDK---AQ 113 (643)
Q Consensus 45 ~~~~~~~~~~~~~----~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~----~~G~I~~~g~~~~~---~~ 113 (643)
+++++++++.|+. ..+|+||||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|+++.. ..
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 3578899988876 4699999999999999999999999999999999999874 79999999998743 22
Q ss_pred h----cccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHH
Q 006505 114 F----RKVSGYVTQRD--TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERR 187 (643)
Q Consensus 114 ~----~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerq 187 (643)
. ++.++||+|++ .+.|.+|+.+++...........+++.++++.++++.+||.+..+ ..++++++|||||||
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~--~l~~~p~~LSgGq~Q 160 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPAS--RLDVYPHQLSGGMSQ 160 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHH--HHhCCchhCCHHHHH
Confidence 2 24699999997 578999999998776544323345666778999999999974221 125688999999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChh
Q 006505 188 RVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVD 267 (643)
Q Consensus 188 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 267 (643)
||+||+||+.+|++|++||||+|||+.++.+++++|++++++.|.|+|++|||++ .+.+++|+|++|++|++++.|+++
T Consensus 161 Rv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~-~~~~~adri~vm~~G~ive~g~~~ 239 (326)
T PRK11022 161 RVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA-LVAEAAHKIIVMYAGQVVETGKAH 239 (326)
T ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHH
Confidence 9999999999999999999999999999999999999998767999999999997 478899999999999999999998
Q ss_pred HHH
Q 006505 268 LLS 270 (643)
Q Consensus 268 ~~~ 270 (643)
++.
T Consensus 240 ~~~ 242 (326)
T PRK11022 240 DIF 242 (326)
T ss_pred HHh
Confidence 875
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-44 Score=361.83 Aligned_cols=204 Identities=34% Similarity=0.570 Sum_probs=178.4
Q ss_pred cccccccccc--cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEEEEc
Q 006505 48 LEEAADSDGV--RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGYVT 122 (643)
Q Consensus 48 ~~~~~~~~~~--~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~yv~ 122 (643)
+++++++|++ +.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++.. ..+++.++|++
T Consensus 2 ~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 81 (211)
T cd03225 2 LKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVF 81 (211)
T ss_pred ceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEe
Confidence 5678888877 789999999999999999999999999999999999999999999999987642 34567899999
Q ss_pred cCCC-CCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCE
Q 006505 123 QRDT-LFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKV 201 (643)
Q Consensus 123 Q~~~-l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~i 201 (643)
|++. .++.+|++||+.+..... ....++.+++++++++.+|+.+.. ++++..||||||||++||+||+.+|++
T Consensus 82 q~~~~~~~~~t~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~LSgG~~qrv~laral~~~p~l 155 (211)
T cd03225 82 QNPDDQFFGPTVEEEVAFGLENL-GLPEEEIEERVEEALELVGLEGLR-----DRSPFTLSGGQKQRVAIAGVLAMDPDI 155 (211)
T ss_pred cChhhhcCCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCcHhhh-----cCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 9974 366789999998865432 223344456788999999998765 446789999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCe
Q 006505 202 LILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGS 259 (643)
Q Consensus 202 lllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 259 (643)
++|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.++||++++|++|+
T Consensus 156 lllDEPt~~LD~~~~~~~~~~l~~~~~~-~~tvi~~sH~~~-~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 156 LLLDEPTAGLDPAGRRELLELLKKLKAE-GKTIIIVTHDLD-LLLELADRVIVLEDGK 211 (211)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHH-HHHHhCCEEEEEeCCC
Confidence 9999999999999999999999999875 999999999997 5888899999999885
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-45 Score=363.29 Aligned_cols=207 Identities=34% Similarity=0.572 Sum_probs=178.2
Q ss_pred cccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEccCCCC
Q 006505 48 LEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTL 127 (643)
Q Consensus 48 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l 127 (643)
++|++++|+++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++. ..++.++|++|++.+
T Consensus 2 ~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~--~~~~~i~~v~q~~~~ 79 (213)
T cd03235 2 VEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE--KERKRIGYVPQRRSI 79 (213)
T ss_pred cccceeEECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH--HHHhheEEecccccc
Confidence 578888998888999999999999999999999999999999999999999999999998764 456789999999876
Q ss_pred C--CCCCHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEE
Q 006505 128 F--PLLTVEETLMFSAKLRLR---LPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVL 202 (643)
Q Consensus 128 ~--~~lTv~E~l~~~~~~~~~---~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~il 202 (643)
. ..+||+||+.+....... ...++.+++++++++.+|+++..+ +++.+||||||||++||+||+.+|++|
T Consensus 80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgG~~qrv~la~al~~~p~ll 154 (213)
T cd03235 80 DRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELAD-----RQIGELSGGQQQRVLLARALVQDPDLL 154 (213)
T ss_pred ccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHh-----CCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 3 337999999876432110 112334567899999999987664 467899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEec
Q 006505 203 ILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHG 264 (643)
Q Consensus 203 llDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 264 (643)
+|||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.+++|++++|++| +++.|
T Consensus 155 llDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~~sH~~~-~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 155 LLDEPFAGVDPKTQEDIYELLRELRR-EGMTILVVTHDLG-LVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHhcCEEEEEcCc-EeecC
Confidence 99999999999999999999999987 4999999999997 588899999999876 55554
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-44 Score=363.59 Aligned_cols=208 Identities=31% Similarity=0.499 Sum_probs=179.7
Q ss_pred hhcccccccccc----cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---h---hhc
Q 006505 46 SKLEEAADSDGV----RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---A---QFR 115 (643)
Q Consensus 46 ~~~~~~~~~~~~----~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~---~~~ 115 (643)
+++++++++|++ +++|+|+|+++++||+++|+|||||||||||++|+|+.+|++|+|.++|+++.. . .++
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 457788888864 579999999999999999999999999999999999999999999999988743 1 123
Q ss_pred -ccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHH
Q 006505 116 -KVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFD 194 (643)
Q Consensus 116 -~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~a 194 (643)
+.++|++|++.+++.+|++||+.+....+. ....+..+++.++++.+|+++..+ +.+..||||||||++||++
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv~lara 155 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGK-KSVKEAKERAYEMLEKVGLEHRIN-----HRPSELSGGERQRVAIARA 155 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHcCChhhhh-----CChhhCCHHHHHHHHHHHH
Confidence 579999999999999999999998654331 233444567889999999987664 4668999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEE
Q 006505 195 VIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVL 261 (643)
Q Consensus 195 L~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv 261 (643)
|+.+|++|+|||||+|||+.++..+.+.|++++++.|+|||++||+++ .+ +.+|++++|++|+++
T Consensus 156 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~-~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 156 LVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE-LA-KKLDRVLEMKDGQLF 220 (221)
T ss_pred HhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-hhcCEEEEEeCCEec
Confidence 999999999999999999999999999999998755899999999997 35 458999999999975
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-44 Score=363.95 Aligned_cols=208 Identities=29% Similarity=0.481 Sum_probs=183.4
Q ss_pred hhcccccccc-cccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---h---hhcccE
Q 006505 46 SKLEEAADSD-GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---A---QFRKVS 118 (643)
Q Consensus 46 ~~~~~~~~~~-~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~---~~~~~i 118 (643)
++++|++++| +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. . .+++.+
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 81 (222)
T PRK10908 2 IRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQI 81 (222)
T ss_pred EEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhhe
Confidence 4578888898 66789999999999999999999999999999999999999999999999987642 1 246789
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcC
Q 006505 119 GYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHD 198 (643)
Q Consensus 119 ~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~ 198 (643)
+|++|++.+++.+|++||+.+....+ ..+.++.+++++++++.+++.+..+ +.+..||||||||++||+||+.+
T Consensus 82 ~~~~q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv~laral~~~ 155 (222)
T PRK10908 82 GMIFQDHHLLMDRTVYDNVAIPLIIA-GASGDDIRRRVSAALDKVGLLDKAK-----NFPIQLSGGEQQRVGIARAVVNK 155 (222)
T ss_pred EEEecCccccccccHHHHHHhHHHhc-CCCHHHHHHHHHHHHHHcCChhhhh-----CCchhCCHHHHHHHHHHHHHHcC
Confidence 99999998888899999999875443 2234445567889999999987663 46789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEE
Q 006505 199 PKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVL 261 (643)
Q Consensus 199 p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv 261 (643)
|++|+|||||+|||+.++..+.+.|++++++ |.|||++||+++ ++.+.+|++++|++|+++
T Consensus 156 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 156 PAVLLADEPTGNLDDALSEGILRLFEEFNRV-GVTVLMATHDIG-LISRRSYRMLTLSDGHLH 216 (222)
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEc
Confidence 9999999999999999999999999999764 899999999997 588899999999999975
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-44 Score=373.35 Aligned_cols=217 Identities=26% Similarity=0.425 Sum_probs=189.4
Q ss_pred hhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc-----hhhcccEEE
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-----AQFRKVSGY 120 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~-----~~~~~~i~y 120 (643)
++++|++++|+++.+|+|+|+++++||+++|+||||||||||||+|+|+++|++|+|.++|+++.. ...++.++|
T Consensus 2 l~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~ 81 (271)
T PRK13638 2 LATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVAT 81 (271)
T ss_pred eEEEEEEEEcCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEE
Confidence 567899999988899999999999999999999999999999999999999999999999998731 235678999
Q ss_pred EccCCCC-CCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCC
Q 006505 121 VTQRDTL-FPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDP 199 (643)
Q Consensus 121 v~Q~~~l-~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p 199 (643)
++|++.+ +...|+.||+.+..... +...++..++++++++.+|+.+..+ +.+..||||||||++||++|+.+|
T Consensus 82 v~q~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgG~~qrl~laraL~~~p 155 (271)
T PRK13638 82 VFQDPEQQIFYTDIDSDIAFSLRNL-GVPEAEITRRVDEALTLVDAQHFRH-----QPIQCLSHGQKKRVAIAGALVLQA 155 (271)
T ss_pred EeeChhhccccccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCHhHhc-----CCchhCCHHHHHHHHHHHHHHcCC
Confidence 9999753 34468999998865432 2234445567889999999987664 467899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 200 KVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 200 ~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+++|++++|++|++++.|+++++.
T Consensus 156 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 224 (271)
T PRK13638 156 RYLLLDEPTAGLDPAGRTQMIAIIRRIVAQ-GNHVIISSHDID-LIYEISDAVYVLRQGQILTHGAPGEVF 224 (271)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999864 899999999997 578899999999999999999988764
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-44 Score=377.25 Aligned_cols=216 Identities=27% Similarity=0.437 Sum_probs=188.6
Q ss_pred hhcccccccccc-----cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc-------hh
Q 006505 46 SKLEEAADSDGV-----RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-------AQ 113 (643)
Q Consensus 46 ~~~~~~~~~~~~-----~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~-------~~ 113 (643)
+++++++++|++ +.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++.. ..
T Consensus 3 i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13641 3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKK 82 (287)
T ss_pred EEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 457889999974 569999999999999999999999999999999999999999999999987632 23
Q ss_pred hcccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCh-hhhhhhcCCCcCCCCCHHHHHHHH
Q 006505 114 FRKVSGYVTQRD--TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLE-HVAMARVGDDRVRGISGGERRRVS 190 (643)
Q Consensus 114 ~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~-~~~~~~vg~~~~~~LSGGerqRv~ 190 (643)
.++.++|++|++ .++ .+||.||+.+..... ....++..++++++++.+||+ +.. ++++++||||||||++
T Consensus 83 ~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~-----~~~~~~LSgGq~qrl~ 155 (287)
T PRK13641 83 LRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNF-GFSEDEAKEKALKWLKKVGLSEDLI-----SKSPFELSGGQMRRVA 155 (287)
T ss_pred HHhceEEEEeChhhhhc-cchHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCChhHh-----hCCcccCCHHHHHHHH
Confidence 466899999996 355 579999998865432 234455667889999999996 455 4467899999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 191 IGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 191 ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.++||++++|++|++++.|+++++.
T Consensus 156 laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~-g~tvlivsH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13641 156 IAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKA-GHTVILVTHNMD-DVAEYADDVLVLEHGKLIKHASPKEIF 233 (287)
T ss_pred HHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999764 999999999997 588999999999999999999988764
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-44 Score=382.70 Aligned_cols=224 Identities=25% Similarity=0.351 Sum_probs=195.6
Q ss_pred hhhhccccccccc----ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCC---ccEEEECCCcCCc---hh
Q 006505 44 ELSKLEEAADSDG----VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQ---SGSTFVNGSPIDK---AQ 113 (643)
Q Consensus 44 ~~~~~~~~~~~~~----~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~---~G~I~~~g~~~~~---~~ 113 (643)
++++++|+++.|+ ...+|+||||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|+++.. ..
T Consensus 11 ~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~ 90 (330)
T PRK09473 11 ALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKE 90 (330)
T ss_pred ceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHH
Confidence 4678999999884 357999999999999999999999999999999999999986 9999999998743 22
Q ss_pred ---hc-ccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHH
Q 006505 114 ---FR-KVSGYVTQRD--TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERR 187 (643)
Q Consensus 114 ---~~-~~i~yv~Q~~--~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerq 187 (643)
+| +.++||+|++ .++|.+|+.+++........+.++++..+++.++++.+||.+..+. .+.++++|||||||
T Consensus 91 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~--~~~~p~~LSgG~~Q 168 (330)
T PRK09473 91 LNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKR--MKMYPHEFSGGMRQ 168 (330)
T ss_pred HHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHH--hcCCcccCCHHHHH
Confidence 23 4799999997 6889999999998766543333556667789999999999753322 25688999999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChh
Q 006505 188 RVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVD 267 (643)
Q Consensus 188 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 267 (643)
||+||+||+.+|++||+||||+|||+.++.+++++|++++++.|.|+|++|||++ .+.+++|++++|++|++++.|+++
T Consensus 169 Rv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~~Dri~vm~~G~ive~g~~~ 247 (330)
T PRK09473 169 RVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG-VVAGICDKVLVMYAGRTMEYGNAR 247 (330)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEECCHH
Confidence 9999999999999999999999999999999999999998867999999999997 477899999999999999999998
Q ss_pred HHH
Q 006505 268 LLS 270 (643)
Q Consensus 268 ~~~ 270 (643)
++.
T Consensus 248 ~i~ 250 (330)
T PRK09473 248 DVF 250 (330)
T ss_pred HHH
Confidence 875
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-44 Score=372.80 Aligned_cols=219 Identities=35% Similarity=0.518 Sum_probs=191.4
Q ss_pred hhhccccccccc-ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEEE
Q 006505 45 LSKLEEAADSDG-VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGY 120 (643)
Q Consensus 45 ~~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~y 120 (643)
+++++|++++|+ .+.+|+|+||++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++.. ...++.++|
T Consensus 3 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (277)
T PRK13652 3 LIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGL 82 (277)
T ss_pred eEEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEE
Confidence 356889999995 5679999999999999999999999999999999999999999999999988743 345678999
Q ss_pred EccCCC-CCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCC
Q 006505 121 VTQRDT-LFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDP 199 (643)
Q Consensus 121 v~Q~~~-l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p 199 (643)
++|++. .+...||.||+.+..... ....++.+++++++++.+||.+..+ +.++.||||||||++||+||+.+|
T Consensus 83 v~q~~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~Gq~qrl~laraL~~~p 156 (277)
T PRK13652 83 VFQNPDDQIFSPTVEQDIAFGPINL-GLDEETVAHRVSSALHMLGLEELRD-----RVPHHLSGGEKKRVAIAGVIAMEP 156 (277)
T ss_pred EecCcccccccccHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHCCChhHhc-----CCcccCCHHHHHHHHHHHHHHcCC
Confidence 999963 333579999998765432 2344555667899999999987664 467899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 200 KVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 200 ~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
++|+|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|++++.|+++++.
T Consensus 157 ~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~~~~~drv~~l~~G~i~~~g~~~~~~ 226 (277)
T PRK13652 157 QVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD-LVPEMADYIYVMDKGRIVAYGTVEEIF 226 (277)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCeEEEECCHHHHh
Confidence 9999999999999999999999999998755899999999997 588999999999999999999998875
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-44 Score=369.58 Aligned_cols=221 Identities=23% Similarity=0.384 Sum_probs=189.3
Q ss_pred hhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCC-----CCccEEEECCCcCCc-----hh
Q 006505 44 ELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLT-----PQSGSTFVNGSPIDK-----AQ 113 (643)
Q Consensus 44 ~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~-----~~~G~I~~~g~~~~~-----~~ 113 (643)
+++++++++++|+++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ |++|+|.++|+++.. ..
T Consensus 5 ~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 84 (253)
T PRK14242 5 PKMEARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVE 84 (253)
T ss_pred cEEEEeeeEEEECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHH
Confidence 45778999999988889999999999999999999999999999999999864 579999999988742 24
Q ss_pred hcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHH
Q 006505 114 FRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGF 193 (643)
Q Consensus 114 ~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~ 193 (643)
+++.++|++|++.+++. ||+||+.+....+.....+..+++++++++.+|+.+...+.. ++.++.|||||||||+||+
T Consensus 85 ~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgGq~qrv~lar 162 (253)
T PRK14242 85 LRRRVGMVFQKPNPFPK-SIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRL-HESALGLSGGQQQRLCIAR 162 (253)
T ss_pred HhhcEEEEecCCCCCcC-cHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHh-hCCcccCCHHHHHHHHHHH
Confidence 56789999999988884 999999987544321133444567889999999854222211 4577899999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHH
Q 006505 194 DVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLL 269 (643)
Q Consensus 194 aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 269 (643)
+|+.+|++|+|||||+|||+.++..+.+.|++++ + |+|||++||+++ ++.+++|++++|++|+++..|+++++
T Consensus 163 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tvii~tH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14242 163 ALAVEPEVLLMDEPASALDPIATQKIEELIHELK-A-RYTIIIVTHNMQ-QAARVSDVTAFFYMGKLIEVGPTEQI 235 (253)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-c-CCeEEEEEecHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999995 3 799999999997 58899999999999999999998775
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-44 Score=372.92 Aligned_cols=219 Identities=24% Similarity=0.388 Sum_probs=188.7
Q ss_pred hhccccccccc---------ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---h-
Q 006505 46 SKLEEAADSDG---------VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---A- 112 (643)
Q Consensus 46 ~~~~~~~~~~~---------~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~- 112 (643)
+++++++++|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence 56778888885 4679999999999999999999999999999999999999999999999988743 1
Q ss_pred --hhcccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCh-hhhhhhcCCCcCCCCCHHHHH
Q 006505 113 --QFRKVSGYVTQRD--TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLE-HVAMARVGDDRVRGISGGERR 187 (643)
Q Consensus 113 --~~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~-~~~~~~vg~~~~~~LSGGerq 187 (643)
.+++.++|++|++ .+++.+||+||+.+..........++.++++.++++.+|+. +.. +..+.+|||||||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----~~~~~~LSgGe~q 157 (265)
T TIGR02769 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDA-----DKLPRQLSGGQLQ 157 (265)
T ss_pred HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhh-----hCChhhCCHHHHH
Confidence 2466799999996 46778999999987653221223344556789999999995 455 4467899999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChh
Q 006505 188 RVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVD 267 (643)
Q Consensus 188 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 267 (643)
|++||+||+.+|++|||||||+|||+.++..+.+.|++++++.|+|||++|||++ .+.+++|++++|++|++++.|+++
T Consensus 158 rv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~g~~~ 236 (265)
T TIGR02769 158 RINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR-LVQSFCQRVAVMDKGQIVEECDVA 236 (265)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHHhcEEEEEeCCEEEEECCHH
Confidence 9999999999999999999999999999999999999998755899999999997 477899999999999999999988
Q ss_pred HHH
Q 006505 268 LLS 270 (643)
Q Consensus 268 ~~~ 270 (643)
++.
T Consensus 237 ~~~ 239 (265)
T TIGR02769 237 QLL 239 (265)
T ss_pred HHc
Confidence 764
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-44 Score=360.96 Aligned_cols=209 Identities=31% Similarity=0.467 Sum_probs=181.2
Q ss_pred hcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc-hhhcccEEEEccCC
Q 006505 47 KLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-AQFRKVSGYVTQRD 125 (643)
Q Consensus 47 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~-~~~~~~i~yv~Q~~ 125 (643)
.+++++++|+++. .|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ...++.++|++|++
T Consensus 2 ~~~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~ 79 (211)
T cd03298 2 RLDKIRFSYGEQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQEN 79 (211)
T ss_pred EEEeEEEEeCCEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEeccc
Confidence 4678888887654 39999999999999999999999999999999999999999999988743 22356799999999
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q 006505 126 TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILD 205 (643)
Q Consensus 126 ~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlD 205 (643)
.+++.+|++||+.+....+.. ..++.++++.++++.+|+++..++ .+.+||||||||++||++|+.+|++++||
T Consensus 80 ~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~ia~al~~~p~llllD 153 (211)
T cd03298 80 NLFAHLTVEQNVGLGLSPGLK-LTAEDRQAIEVALARVGLAGLEKR-----LPGELSGGERQRVALARVLVRDKPVLLLD 153 (211)
T ss_pred ccCCCCcHHHHHhcccccccC-ccHHHHHHHHHHHHHcCCHHHHhC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 999999999999876432211 123345678999999999876644 67899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEec
Q 006505 206 EPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHG 264 (643)
Q Consensus 206 EPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 264 (643)
|||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|+++..|
T Consensus 154 EP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 154 EPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPE-DAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHhhhCEEEEEECCEEeecC
Confidence 9999999999999999999998756899999999997 588899999999999998654
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-44 Score=373.60 Aligned_cols=221 Identities=26% Similarity=0.397 Sum_probs=192.4
Q ss_pred hhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEEE
Q 006505 44 ELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGY 120 (643)
Q Consensus 44 ~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~y 120 (643)
+++++++++++|+++++|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. ..+++.++|
T Consensus 10 ~~l~i~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 89 (265)
T PRK10575 10 TTFALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAY 89 (265)
T ss_pred ceEEEeeEEEEECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEE
Confidence 45789999999988899999999999999999999999999999999999999999999999987632 345678999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhc
Q 006505 121 VTQRDTLFPLLTVEETLMFSAKLRLR---LPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIH 197 (643)
Q Consensus 121 v~Q~~~l~~~lTv~E~l~~~~~~~~~---~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~ 197 (643)
++|+..+++.+|+.||+.+....... ..++..+++++++++.+++++.. +..+++||||||||++||++|+.
T Consensus 90 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~LSgG~~qrv~laral~~ 164 (265)
T PRK10575 90 LPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLA-----HRLVDSLSGGERQRAWIAMLVAQ 164 (265)
T ss_pred eccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHh-----cCCcccCCHHHHHHHHHHHHHhc
Confidence 99998888899999999875321111 11223456788999999998765 44677999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 198 DPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 198 ~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
+|++|||||||+|||+.++..+.+.|++++++.|.|||++||+++ ++.+++|++++|++|+++..|+++++.
T Consensus 165 ~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~-~i~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (265)
T PRK10575 165 DSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN-MAARYCDYLVALRGGEMIAQGTPAELM 236 (265)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEecCHHHhc
Confidence 999999999999999999999999999998755899999999997 588999999999999999999887653
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-44 Score=371.63 Aligned_cols=230 Identities=25% Similarity=0.377 Sum_probs=195.9
Q ss_pred hhhhcccccccccc--cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccE
Q 006505 44 ELSKLEEAADSDGV--RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVS 118 (643)
Q Consensus 44 ~~~~~~~~~~~~~~--~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i 118 (643)
+++++++++++|++ +.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ..+++.+
T Consensus 6 ~~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 6 SIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred ceEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 45788999999975 459999999999999999999999999999999999999999999999988743 3467789
Q ss_pred EEEccCCC-CCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhc
Q 006505 119 GYVTQRDT-LFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIH 197 (643)
Q Consensus 119 ~yv~Q~~~-l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~ 197 (643)
+|++|++. +++..|+.+|+.+..... ....++..++++++++.+|+.+..+ ..++.||||||||++||+||+.
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrl~laral~~ 159 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENH-AVPYDEMHRRVSEALKQVDMLERAD-----YEPNALSGGQKQRVAIAGVLAL 159 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhc-CCCHHHHHHHHHHHHHHcCCchhhh-----CCcccCCHHHHHHHHHHHHHHc
Confidence 99999974 677789999998875432 2234455667889999999987664 4678999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH---HHH
Q 006505 198 DPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV---SLR 274 (643)
Q Consensus 198 ~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~---~f~ 274 (643)
+|+++||||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.. +|++++|++|++++.|+++++.+ .+.
T Consensus 160 ~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~-~~~~-~d~i~~l~~G~i~~~g~~~~~~~~~~~~~ 237 (269)
T PRK13648 160 NPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLS-EAME-ADHVIVMNKGTVYKEGTPTEIFDHAEELT 237 (269)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCch-HHhc-CCEEEEEECCEEEEecCHHHHhcCHHHHH
Confidence 999999999999999999999999999998755899999999997 4654 99999999999999999987643 333
Q ss_pred HcCCCCC
Q 006505 275 MMGLQLP 281 (643)
Q Consensus 275 ~~g~~~p 281 (643)
..|.++|
T Consensus 238 ~~~~~~~ 244 (269)
T PRK13648 238 RIGLDLP 244 (269)
T ss_pred hcCCCCC
Confidence 4454443
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-44 Score=368.34 Aligned_cols=221 Identities=27% Similarity=0.407 Sum_probs=190.6
Q ss_pred hhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCC-----CccEEEECCCcCCc---hhhccc
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTP-----QSGSTFVNGSPIDK---AQFRKV 117 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~-----~~G~I~~~g~~~~~---~~~~~~ 117 (643)
+++++++++|+++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| ++|+|.++|+++.. ..+++.
T Consensus 4 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (250)
T PRK14247 4 IEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRR 83 (250)
T ss_pred EEEEeeEEEECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhcc
Confidence 5688999999888999999999999999999999999999999999999874 69999999988743 345678
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHh
Q 006505 118 SGYVTQRDTLFPLLTVEETLMFSAKLRLR-LPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVI 196 (643)
Q Consensus 118 i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~-~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~ 196 (643)
++|++|++.+++.+||+||+.+....+.. ...++..+++.++++.+|+.+..... .+..+.+||||||||++||+||+
T Consensus 84 i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LSgG~~qrv~laral~ 162 (250)
T PRK14247 84 VQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDR-LDAPAGKLSGGQQQRLCIARALA 162 (250)
T ss_pred EEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhh-hcCCcccCCHHHHHHHHHHHHHh
Confidence 99999999888899999999987543211 13344566789999999986422111 15577899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 197 HDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 197 ~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
.+|++++|||||+|||+.++..+.+.|++++ + |+|+|++||+++ ++.+++|++++|++|+++..|+++++.
T Consensus 163 ~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 163 FQPEVLLADEPTANLDPENTAKIESLFLELK-K-DMTIVLVTHFPQ-QAARISDYVAFLYKGQIVEWGPTREVF 233 (250)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHH-HHHHhcCEEEEEECCeEEEECCHHHHH
Confidence 9999999999999999999999999999985 3 799999999997 578899999999999999999988764
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-44 Score=372.01 Aligned_cols=221 Identities=23% Similarity=0.376 Sum_probs=191.1
Q ss_pred hhhhcccccccccc---------cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---
Q 006505 44 ELSKLEEAADSDGV---------RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK--- 111 (643)
Q Consensus 44 ~~~~~~~~~~~~~~---------~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~--- 111 (643)
++++++|++++|+. +++|+|+|+++++||+++|+|||||||||||++|+|+++|++|+|.++|+++..
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~ 82 (267)
T PRK15112 3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDY 82 (267)
T ss_pred ceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCch
Confidence 35778999998862 479999999999999999999999999999999999999999999999988743
Q ss_pred hhhcccEEEEccCCC--CCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCh-hhhhhhcCCCcCCCCCHHHHHH
Q 006505 112 AQFRKVSGYVTQRDT--LFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLE-HVAMARVGDDRVRGISGGERRR 188 (643)
Q Consensus 112 ~~~~~~i~yv~Q~~~--l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~-~~~~~~vg~~~~~~LSGGerqR 188 (643)
...++.++|++|++. +++.+|+.|++.+....+.....++..++++++++.+|+. +.. +..+..||||||||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~LS~G~~qr 157 (267)
T PRK15112 83 SYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHA-----SYYPHMLAPGQKQR 157 (267)
T ss_pred hhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHH-----hcCchhcCHHHHHH
Confidence 223467999999974 6788899999988765443233445556789999999994 444 33668999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhH
Q 006505 189 VSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDL 268 (643)
Q Consensus 189 v~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 268 (643)
++||++|+.+|++|||||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|+++..|++++
T Consensus 158 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 236 (267)
T PRK15112 158 LGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG-MMKHISDQVLVMHQGEVVERGSTAD 236 (267)
T ss_pred HHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhcCEEEEEECCEEEecCCHHH
Confidence 999999999999999999999999999999999999998756899999999997 5888999999999999999998877
Q ss_pred HH
Q 006505 269 LS 270 (643)
Q Consensus 269 ~~ 270 (643)
+.
T Consensus 237 ~~ 238 (267)
T PRK15112 237 VL 238 (267)
T ss_pred Hh
Confidence 54
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-44 Score=386.46 Aligned_cols=214 Identities=31% Similarity=0.467 Sum_probs=190.5
Q ss_pred cccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCC----cCCc---h---hhc-ccE
Q 006505 50 EAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGS----PIDK---A---QFR-KVS 118 (643)
Q Consensus 50 ~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~----~~~~---~---~~~-~~i 118 (643)
++.++|+...+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|+++|+ ++.. . ..| +.+
T Consensus 29 ~~~~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i 108 (382)
T TIGR03415 29 EILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRV 108 (382)
T ss_pred HHHHhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCE
Confidence 3457889999999999999999999999999999999999999999999999999996 3321 1 222 579
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcC
Q 006505 119 GYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHD 198 (643)
Q Consensus 119 ~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~ 198 (643)
+||+|+..++|.+||+||+.++...+ +.++++.+++++++++.+||++.. +.++.+|||||||||+|||||+.+
T Consensus 109 ~~vfQ~~~l~p~~Tv~eNi~~~~~~~-g~~~~~~~~~a~e~le~vgL~~~~-----~~~~~~LSgGq~QRV~LARALa~~ 182 (382)
T TIGR03415 109 SMVFQKFALMPWLTVEENVAFGLEMQ-GMPEAERRKRVDEQLELVGLAQWA-----DKKPGELSGGMQQRVGLARAFAMD 182 (382)
T ss_pred EEEECCCcCCCCCcHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCchhh-----cCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999986543 234556677899999999998776 446789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 199 PKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 199 p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
|++|||||||+|||+.++.++.+.|++++++.|+|||++|||++ ++.+++|++++|++|+++..|+++++.
T Consensus 183 P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~-e~~~l~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 183 ADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD-EALKIGNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred CCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 99999999999999999999999999998766999999999997 588999999999999999999998874
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-44 Score=365.40 Aligned_cols=213 Identities=27% Similarity=0.406 Sum_probs=185.4
Q ss_pred hcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---h-hhcccEEEEc
Q 006505 47 KLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---A-QFRKVSGYVT 122 (643)
Q Consensus 47 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~-~~~~~i~yv~ 122 (643)
++++++++|+++++|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. . ..++.++|++
T Consensus 2 ~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~ 81 (230)
T TIGR03410 2 EVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVP 81 (230)
T ss_pred EEEeEEEEeCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEec
Confidence 46788899988899999999999999999999999999999999999999999999999988643 1 2356799999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC-ChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCE
Q 006505 123 QRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELG-LEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKV 201 (643)
Q Consensus 123 Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lg-l~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~i 201 (643)
|++.+++.+|++||+.+....+. .. ..+.++++++.++ +.+.. ++.+++||||||||++||++|+.+|++
T Consensus 82 q~~~~~~~~tv~~~l~~~~~~~~-~~---~~~~~~~~l~~~~~l~~~~-----~~~~~~LS~G~~qrv~la~al~~~p~i 152 (230)
T TIGR03410 82 QGREIFPRLTVEENLLTGLAALP-RR---SRKIPDEIYELFPVLKEML-----GRRGGDLSGGQQQQLAIARALVTRPKL 152 (230)
T ss_pred cCCcccCCCcHHHHHHHHHHhcC-cc---hHHHHHHHHHHHHhHHHHh-----hCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999988754331 11 2234567777776 45444 456789999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHH
Q 006505 202 LILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLL 269 (643)
Q Consensus 202 lllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 269 (643)
++|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|+++..|+++++
T Consensus 153 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 153 LLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD-FARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred EEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHc
Confidence 99999999999999999999999998755899999999997 58889999999999999999998876
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-44 Score=373.34 Aligned_cols=216 Identities=30% Similarity=0.447 Sum_probs=189.1
Q ss_pred hhccccccccc-ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc----hhhcccEEE
Q 006505 46 SKLEEAADSDG-VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK----AQFRKVSGY 120 (643)
Q Consensus 46 ~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~----~~~~~~i~y 120 (643)
+.+++++++|+ .+.+|+|+||++++||+++|+||||||||||+|+|+|+.+|++|+|.++|.++.. ...++.++|
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 81 (274)
T PRK13644 2 IRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGI 81 (274)
T ss_pred EEEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEE
Confidence 45788999985 5679999999999999999999999999999999999999999999999998742 345678999
Q ss_pred EccCCC-CCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCC
Q 006505 121 VTQRDT-LFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDP 199 (643)
Q Consensus 121 v~Q~~~-l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p 199 (643)
++|++. .+...|+.||+.+..... ..+.++.+++++++++.+|+++..+ ..++.||||||||++||+||+.+|
T Consensus 82 v~q~~~~~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~~~~-----~~~~~LS~G~~qrv~laral~~~p 155 (274)
T PRK13644 82 VFQNPETQFVGRTVEEDLAFGPENL-CLPPIEIRKRVDRALAEIGLEKYRH-----RSPKTLSGGQGQCVALAGILTMEP 155 (274)
T ss_pred EEEChhhhcccchHHHHHHhhHHHc-CCCHHHHHHHHHHHHHHCCCHHHhc-----CCcccCCHHHHHHHHHHHHHHcCC
Confidence 999975 366689999998875432 2345555677899999999987664 467899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 200 KVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 200 ~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
+++||||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++ +.+|++++|++|++++.|+++++.
T Consensus 156 ~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~g~til~~tH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~~ 223 (274)
T PRK13644 156 ECLIFDEVTSMLDPDSGIAVLERIKKLHE-KGKTIVYITHNLE-EL-HDADRIIVMDRGKIVLEGEPENVL 223 (274)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHH-HH-hhCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999999999999986 4999999999997 46 679999999999999999988764
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-44 Score=372.63 Aligned_cols=220 Identities=23% Similarity=0.392 Sum_probs=192.3
Q ss_pred hhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEEEE
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGYV 121 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~yv 121 (643)
.+++++++++|+++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ...++.++|+
T Consensus 7 ~l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v 86 (265)
T PRK10253 7 RLRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLL 86 (265)
T ss_pred EEEEEEEEEEECCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEe
Confidence 4678999999998899999999999999999999999999999999999999999999999987643 3445679999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcC
Q 006505 122 TQRDTLFPLLTVEETLMFSAKLRLR---LPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHD 198 (643)
Q Consensus 122 ~Q~~~l~~~lTv~E~l~~~~~~~~~---~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~ 198 (643)
+|++.+++.+|++||+.+......+ ...+..+++++++++.+|+++.. ++.++.||||||||++||+||+.+
T Consensus 87 ~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~LS~Gq~qrv~laral~~~ 161 (265)
T PRK10253 87 AQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLA-----DQSVDTLSGGQRQRAWIAMVLAQE 161 (265)
T ss_pred eccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHh-----cCCcccCChHHHHHHHHHHHHhcC
Confidence 9999999889999999875211100 11233455788999999998765 446789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 199 PKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 199 p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
|++++|||||+|||+.++..+.+.|++++++.|.|||++||+++ ++.+++|++++|++|++++.|+++++.
T Consensus 162 p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (265)
T PRK10253 162 TAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASHLIALREGKIVAQGAPKEIV 232 (265)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999998755899999999997 588999999999999999999988764
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-44 Score=368.08 Aligned_cols=222 Identities=23% Similarity=0.327 Sum_probs=189.2
Q ss_pred hhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCC-----CccEEEECCCcCCc-----hh
Q 006505 44 ELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTP-----QSGSTFVNGSPIDK-----AQ 113 (643)
Q Consensus 44 ~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~-----~~G~I~~~g~~~~~-----~~ 113 (643)
+++++++++++|+++.+|+|+|+++++||+++|+||||||||||+|+|+|+++| ++|+|.++|+++.. ..
T Consensus 6 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 85 (254)
T PRK14273 6 AIIETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILE 85 (254)
T ss_pred ceEEEeeeEEEeCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHH
Confidence 357889999999888899999999999999999999999999999999999987 48999999987632 24
Q ss_pred hcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHH
Q 006505 114 FRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGF 193 (643)
Q Consensus 114 ~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~ 193 (643)
.++.++|++|++.+++ +||+||+.+..........++.+++++++++.+++.+.... .-+..+++||||||||++|||
T Consensus 86 ~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-~~~~~~~~LSgG~~qrv~lar 163 (254)
T PRK14273 86 LRRKIGMVFQTPNPFL-MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKD-KLNTNALSLSGGQQQRLCIAR 163 (254)
T ss_pred HhhceEEEeecccccc-CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHH-HHhCCcccCCHHHHHHHHHHH
Confidence 5678999999988885 89999999875433112334455678899999987421111 114577899999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 194 DVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 194 aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
+|+.+|++|+|||||+|||+.++..+++.|++++ + +.|||++||+++ ++.+++|++++|++|+++..|+++++.
T Consensus 164 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 164 TLAIEPNVILMDEPTSALDPISTGKIEELIINLK-E-SYTIIIVTHNMQ-QAGRISDRTAFFLNGCIEEESSTDELF 237 (254)
T ss_pred HHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999999999999995 3 799999999997 578899999999999999999988764
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-44 Score=370.05 Aligned_cols=218 Identities=28% Similarity=0.475 Sum_probs=190.2
Q ss_pred hhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEEEEc
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGYVT 122 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~yv~ 122 (643)
+++++++++|+++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ...++.++|++
T Consensus 3 l~~~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 82 (255)
T PRK11231 3 LRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLP 82 (255)
T ss_pred EEEEeEEEEECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEec
Confidence 467899999998899999999999999999999999999999999999999999999999987632 34566799999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCC
Q 006505 123 QRDTLFPLLTVEETLMFSAKLR---LRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDP 199 (643)
Q Consensus 123 Q~~~l~~~lTv~E~l~~~~~~~---~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p 199 (643)
|+..+++.+|+.||+.++.... .....+...++++++++.+|+.+..+ ..+..||||||||++||+||+.+|
T Consensus 83 q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv~laral~~~p 157 (255)
T PRK11231 83 QHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLAD-----RRLTDLSGGQRQRAFLAMVLAQDT 157 (255)
T ss_pred ccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHc-----CCcccCCHHHHHHHHHHHHHhcCC
Confidence 9998888899999998753110 11112334567889999999987664 467899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 200 KVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 200 ~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+++|++++|++|+++..|+++++.
T Consensus 158 ~llllDEP~~~LD~~~~~~l~~~l~~l~~~-~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 226 (255)
T PRK11231 158 PVVLLDEPTTYLDINHQVELMRLMRELNTQ-GKTVVTVLHDLN-QASRYCDHLVVLANGHVMAQGTPEEVM 226 (255)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEECCHH-HHHHhcCEEEEEECCeEEEEcCHHHhc
Confidence 999999999999999999999999999764 899999999997 588999999999999999999887653
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-44 Score=367.56 Aligned_cols=222 Identities=27% Similarity=0.389 Sum_probs=190.7
Q ss_pred hhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCC-----CccEEEECCCcCC-----chhh
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTP-----QSGSTFVNGSPID-----KAQF 114 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~-----~~G~I~~~g~~~~-----~~~~ 114 (643)
++++++++++|+++++|+|+|+++++||+++|+||||||||||+++|+|+++| ++|+|.++|+++. ...+
T Consensus 4 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 83 (253)
T PRK14267 4 AIETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEV 83 (253)
T ss_pred eEEEEeEEEEeCCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHH
Confidence 46788999999888999999999999999999999999999999999999987 4999999999874 1245
Q ss_pred cccEEEEccCCCCCCCCCHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHH
Q 006505 115 RKVSGYVTQRDTLFPLLTVEETLMFSAKLRLR-LPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGF 193 (643)
Q Consensus 115 ~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~-~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~ 193 (643)
++.++|++|++.+++.+||.||+.+....+.. .+.++..++++++++.+|+.+..... -+..+..||||||||++||+
T Consensus 84 ~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LS~G~~qrv~lar 162 (253)
T PRK14267 84 RREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDR-LNDYPSNLSGGQRQRLVIAR 162 (253)
T ss_pred hhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhh-hccChhhCCHHHHHHHHHHH
Confidence 67899999999999999999999987543311 13444556788999999985321111 14577899999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 194 DVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 194 aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+++|++++|++|++++.|+++++.
T Consensus 163 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (253)
T PRK14267 163 ALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK--EYTIVLVTHSPA-QAARVSDYVAFLYLGKLIEVGPTRKVF 236 (253)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh--CCEEEEEECCHH-HHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999964 689999999997 588899999999999999999988764
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-44 Score=371.94 Aligned_cols=216 Identities=26% Similarity=0.409 Sum_probs=186.8
Q ss_pred hhcccccccccc-----cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc-------hh
Q 006505 46 SKLEEAADSDGV-----RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-------AQ 113 (643)
Q Consensus 46 ~~~~~~~~~~~~-----~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~-------~~ 113 (643)
+++++++++|++ +++|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ..
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 457888888864 469999999999999999999999999999999999999999999999987642 23
Q ss_pred hcccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChh-hhhhhcCCCcCCCCCHHHHHHHH
Q 006505 114 FRKVSGYVTQRD--TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEH-VAMARVGDDRVRGISGGERRRVS 190 (643)
Q Consensus 114 ~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~-~~~~~vg~~~~~~LSGGerqRv~ 190 (643)
+++.++|++|++ .+++ .||+||+.+..... ..+.++.+++++++++.+||.+ .. ++.+++||||||||++
T Consensus 83 ~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~LSgG~~qrv~ 155 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNF-GVSQEEAEALAREKLALVGISESLF-----EKNPFELSGGQMRRVA 155 (280)
T ss_pred HHhheEEEeeChhhhhcc-ccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCChhhh-----hCCcccCCHHHHHHHH
Confidence 567899999996 4555 69999998865432 2234455667889999999963 44 4467899999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 191 IGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 191 ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
||+||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+++|++++|++|++++.|+++++.
T Consensus 156 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (280)
T PRK13649 156 IAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQS-GMTIVLVTHLMD-DVANYADFVYVLEKGKLVLSGKPKDIF 233 (280)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeccHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999864 899999999997 578899999999999999999988764
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-44 Score=363.35 Aligned_cols=216 Identities=28% Similarity=0.425 Sum_probs=187.4
Q ss_pred hhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc-hhhcccEEEEccC
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-AQFRKVSGYVTQR 124 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~-~~~~~~i~yv~Q~ 124 (643)
+++++++++|+.+. .|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ...++.++|++|+
T Consensus 2 l~~~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 79 (232)
T PRK10771 2 LKLTDITWLYHHLP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQE 79 (232)
T ss_pred eEEEEEEEEECCcc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecc
Confidence 45788999997654 49999999999999999999999999999999999999999999998743 2234679999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 006505 125 DTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLIL 204 (643)
Q Consensus 125 ~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illl 204 (643)
+.+++.+|+.||+.+....... ..+..+++++++++.+|+++..+ +.+..||||||||++||++++.+|++++|
T Consensus 80 ~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv~laral~~~p~lllL 153 (232)
T PRK10771 80 NNLFSHLTVAQNIGLGLNPGLK-LNAAQREKLHAIARQMGIEDLLA-----RLPGQLSGGQRQRVALARCLVREQPILLL 153 (232)
T ss_pred cccccCCcHHHHHhcccccccC-CCHHHHHHHHHHHHHcCcHHHHh-----CCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999999999875321111 12334567899999999987664 46789999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 205 DEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 205 DEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|++++.|++++..
T Consensus 154 DEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~i~~~g~~~~~~ 218 (232)
T PRK10771 154 DEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE-DAARIAPRSLVVADGRIAWDGPTDELL 218 (232)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999998756899999999997 578899999999999999999987764
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-44 Score=370.52 Aligned_cols=220 Identities=28% Similarity=0.451 Sum_probs=190.9
Q ss_pred hhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCC---ccEEEECCCcCCc--------h
Q 006505 44 ELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQ---SGSTFVNGSPIDK--------A 112 (643)
Q Consensus 44 ~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~---~G~I~~~g~~~~~--------~ 112 (643)
++++++|++++|+++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|+ +|+|.++|+++.. .
T Consensus 3 ~~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (262)
T PRK09984 3 TIIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIR 82 (262)
T ss_pred cEEEEeeEEEEeCCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHH
Confidence 3577899999999899999999999999999999999999999999999999886 5999999987632 2
Q ss_pred hhcccEEEEccCCCCCCCCCHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHH
Q 006505 113 QFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRL-------RLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGE 185 (643)
Q Consensus 113 ~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~-------~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGe 185 (643)
..++.++|++|++.+++.+||+||+.+...... +...++.+++++++++.+|+.+..++ .+..|||||
T Consensus 83 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~ 157 (262)
T PRK09984 83 KSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQ-----RVSTLSGGQ 157 (262)
T ss_pred HHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhC-----CccccCHHH
Confidence 345679999999999999999999987542100 11123345678999999999876644 667999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecC
Q 006505 186 RRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGT 265 (643)
Q Consensus 186 rqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 265 (643)
|||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++.|+|||++||+++ .+.+++|++++|++|++++.|+
T Consensus 158 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~-~~~~~~d~i~~l~~g~i~~~g~ 236 (262)
T PRK09984 158 QQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD-YALRYCERIVALRQGHVFYDGS 236 (262)
T ss_pred HHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCC
Confidence 999999999999999999999999999999999999999998756899999999997 4789999999999999999999
Q ss_pred hhHH
Q 006505 266 VDLL 269 (643)
Q Consensus 266 ~~~~ 269 (643)
+++.
T Consensus 237 ~~~~ 240 (262)
T PRK09984 237 SQQF 240 (262)
T ss_pred HHHh
Confidence 8763
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-44 Score=368.59 Aligned_cols=221 Identities=23% Similarity=0.383 Sum_probs=189.8
Q ss_pred hhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCC-----CccEEEECCCcCCc-----hh
Q 006505 44 ELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTP-----QSGSTFVNGSPIDK-----AQ 113 (643)
Q Consensus 44 ~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~-----~~G~I~~~g~~~~~-----~~ 113 (643)
+++++++++++|+++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| ++|+|.++|+++.. ..
T Consensus 11 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 90 (258)
T PRK14268 11 PQIKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVE 90 (258)
T ss_pred eeEEEeeeEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHH
Confidence 457789999999888999999999999999999999999999999999999875 79999999988632 23
Q ss_pred hcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHH
Q 006505 114 FRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGF 193 (643)
Q Consensus 114 ~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~ 193 (643)
+++.++|++|++.+++ +|++||+.+..... +.+.++.+++++++++.+|+.+..... -+..+..|||||||||+||+
T Consensus 91 ~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LSgG~~qrv~lar 167 (258)
T PRK14268 91 LRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH-GANKKDLDGVVENALRSAALWDETSDR-LKSPALSLSGGQQQRLCIAR 167 (258)
T ss_pred HhhhEEEEecCCccCc-ccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCCcchhhh-hcCChhhCCHHHHHHHHHHH
Confidence 5677999999998888 89999999875433 223444556788999999984221111 14567899999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 194 DVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 194 aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
||+.+|+++||||||+|||+.++..+.+.|+++++ |+|||++||+++ ++.+++|++++|++|++++.|+++++.
T Consensus 168 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~--~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 241 (258)
T PRK14268 168 TLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK--DYTIVIVTHNMQ-QAARISDYTGFFLMGELIEFGQTRQIF 241 (258)
T ss_pred HHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh--CCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999999963 799999999997 478899999999999999999988763
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-44 Score=372.08 Aligned_cols=219 Identities=26% Similarity=0.409 Sum_probs=190.4
Q ss_pred hhhcccccccccc------cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc----hhh
Q 006505 45 LSKLEEAADSDGV------RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK----AQF 114 (643)
Q Consensus 45 ~~~~~~~~~~~~~------~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~----~~~ 114 (643)
++++++++++|+. +.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ...
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 5678899999863 579999999999999999999999999999999999999999999999988743 345
Q ss_pred cccEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHH
Q 006505 115 RKVSGYVTQRDT-LFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGF 193 (643)
Q Consensus 115 ~~~i~yv~Q~~~-l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~ 193 (643)
++.++|++|++. .+...||.||+.|..... ..++++.+++++++++.+||++..++ .+.+||||||||++||+
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~~-----~~~~LS~G~~qrv~lar 157 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENL-GIPPEEIRERVDESLKKVGMYEYRRH-----APHLLSGGQKQRVAIAG 157 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhc-CCCHHHHHHHHHHHHHHCCCHhHhhC-----CcccCCHHHHHHHHHHH
Confidence 778999999974 233469999999875432 23455566789999999999877644 67899999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 194 DVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 194 aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
+|+.+|++++|||||+|||+.++..+.+.|++++++.|+|||++||+++. +.. +|++++|++|+++..|+++++..
T Consensus 158 al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~-~~~-~d~v~~l~~G~i~~~g~~~~~~~ 233 (280)
T PRK13633 158 ILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEE-AVE-ADRIIVMDSGKVVMEGTPKEIFK 233 (280)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHH-Hhc-CCEEEEEECCEEEEecCHHHHhc
Confidence 99999999999999999999999999999999987569999999999974 554 99999999999999999988753
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-44 Score=371.10 Aligned_cols=219 Identities=28% Similarity=0.447 Sum_probs=191.1
Q ss_pred hhhhccccccccc--ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccE
Q 006505 44 ELSKLEEAADSDG--VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVS 118 (643)
Q Consensus 44 ~~~~~~~~~~~~~--~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i 118 (643)
++++++|++++|+ ++++|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ..+++.+
T Consensus 6 ~~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 6 VMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred eEEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 3577899999994 5689999999999999999999999999999999999999999999999998743 3467789
Q ss_pred EEEccCCC-CCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhc
Q 006505 119 GYVTQRDT-LFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIH 197 (643)
Q Consensus 119 ~yv~Q~~~-l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~ 197 (643)
+|++|++. .++.+||+||+.+..... ....++.+++++++++.+|+.+..++ .++.||||||||++||+||+.
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrl~laral~~ 159 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLENK-KVPPKKMKDIIDDLAKKVGMEDYLDK-----EPQNLSGGQKQRVAIASVLAL 159 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHcCCHHHhhC-----CcccCCHHHHHHHHHHHHHHc
Confidence 99999974 677789999998865432 22344456678999999999877644 678999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 198 DPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 198 ~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
+|++|+|||||+|||+.++..+.+.|++++++.++|||++||+++. + ..+|++++|++|+++..|+++++.
T Consensus 160 ~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~-~~~d~v~~l~~G~i~~~g~~~~~~ 230 (271)
T PRK13632 160 NPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDE-A-ILADKVIVFSEGKLIAQGKPKEIL 230 (271)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhH-H-hhCCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999999999999999987545999999999974 5 579999999999999999987764
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-44 Score=364.44 Aligned_cols=217 Identities=27% Similarity=0.354 Sum_probs=185.2
Q ss_pred hcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCC--CCCccEEEECCCcCCc---hh-hcccEEE
Q 006505 47 KLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKL--TPQSGSTFVNGSPIDK---AQ-FRKVSGY 120 (643)
Q Consensus 47 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~--~~~~G~I~~~g~~~~~---~~-~~~~i~y 120 (643)
++++++++|+++.+|+|+|+++++||+++|+||||||||||+|+|+|+. +|++|+|.++|+++.. .. .+..++|
T Consensus 2 ~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 81 (243)
T TIGR01978 2 KIKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFL 81 (243)
T ss_pred eEeeEEEEECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEe
Confidence 4688899998889999999999999999999999999999999999995 7899999999988643 12 2345899
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHHcCChh-hhhhhcCCCcCC-CCCHHHHHHHHHH
Q 006505 121 VTQRDTLFPLLTVEETLMFSAKLRLR------LPQAQLRARVKSLVKELGLEH-VAMARVGDDRVR-GISGGERRRVSIG 192 (643)
Q Consensus 121 v~Q~~~l~~~lTv~E~l~~~~~~~~~------~~~~~~~~~v~~~l~~lgl~~-~~~~~vg~~~~~-~LSGGerqRv~ia 192 (643)
++|++.+++.+|++|++.+....... ...++..+++.++++.+|+.+ ..+ +.+. +||||||||++||
T Consensus 82 v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~~~LS~G~~qrl~la 156 (243)
T TIGR01978 82 AFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLN-----RSVNEGFSGGEKKRNEIL 156 (243)
T ss_pred eeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcc-----cccccCcCHHHHHHHHHH
Confidence 99999999999999999876542211 122334567889999999973 443 3455 5999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhh-cCEEEEEeCCeEEEecChhHHH
Q 006505 193 FDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKM-FNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 193 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~-~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||++||+++ .+.+. +|++++|++|++++.|++++..
T Consensus 157 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~vsH~~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (243)
T TIGR01978 157 QMALLEPKLAILDEIDSGLDIDALKIVAEGINRLRE-PDRSFLIITHYQR-LLNYIKPDYVHVLLDGRIVKSGDVELAK 233 (243)
T ss_pred HHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CCcEEEEEEecHH-HHHhhcCCeEEEEeCCEEEEecCHHHhc
Confidence 999999999999999999999999999999999976 4899999999997 47777 8999999999999999987543
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-44 Score=369.75 Aligned_cols=217 Identities=31% Similarity=0.492 Sum_probs=188.9
Q ss_pred hhccccccccc-ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc-----hhhcccEE
Q 006505 46 SKLEEAADSDG-VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-----AQFRKVSG 119 (643)
Q Consensus 46 ~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~-----~~~~~~i~ 119 (643)
+++++++++|+ .+.+++|+|+++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++.. ...++.++
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 81 (275)
T PRK13639 2 LETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVG 81 (275)
T ss_pred EEEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheE
Confidence 45788999996 4679999999999999999999999999999999999999999999999988731 23567899
Q ss_pred EEccCCC-CCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcC
Q 006505 120 YVTQRDT-LFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHD 198 (643)
Q Consensus 120 yv~Q~~~-l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~ 198 (643)
|++|++. .+...||.||+.+..... ....++..+++.++++.+||.+..+ +++++||||||||++||++|+.+
T Consensus 82 ~v~q~~~~~~~~~tv~e~i~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~~~~-----~~~~~LS~Gq~qrv~laral~~~ 155 (275)
T PRK13639 82 IVFQNPDDQLFAPTVEEDVAFGPLNL-GLSKEEVEKRVKEALKAVGMEGFEN-----KPPHHLSGGQKKRVAIAGILAMK 155 (275)
T ss_pred EEeeChhhhhccccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHCCCchhhc-----CChhhCCHHHHHHHHHHHHHhcC
Confidence 9999963 333469999998764322 2344555677899999999987664 46789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 199 PKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 199 p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
|++++|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.++||++++|++|++++.|+++++.
T Consensus 156 p~llllDEPt~gLD~~~~~~l~~~l~~l~~~-~~til~vtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 225 (275)
T PRK13639 156 PEIIVLDEPTSGLDPMGASQIMKLLYDLNKE-GITIIISTHDVD-LVPVYADKVYVMSDGKIIKEGTPKEVF 225 (275)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999875 999999999997 478899999999999999999998874
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-44 Score=384.01 Aligned_cols=211 Identities=25% Similarity=0.460 Sum_probs=187.0
Q ss_pred cccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc-------hhhcccEEEEc
Q 006505 50 EAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-------AQFRKVSGYVT 122 (643)
Q Consensus 50 ~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~-------~~~~~~i~yv~ 122 (643)
|++++|+++.+ |+|+++++||+++|+||||||||||||+|+|+.+|++|+|.++|+++.. ...++.++|++
T Consensus 4 ~l~~~~~~~~~--~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~ 81 (354)
T TIGR02142 4 RFSKRLGDFSL--DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVF 81 (354)
T ss_pred EEEEEECCEEE--EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEe
Confidence 56788887664 9999999999999999999999999999999999999999999988742 13467799999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEE
Q 006505 123 QRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVL 202 (643)
Q Consensus 123 Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~il 202 (643)
|++.+++.+||+||+.|+.... ..++.+++++++++.+||++.. ++++.+|||||||||+||+||+.+|++|
T Consensus 82 q~~~l~~~~tv~enl~~~~~~~---~~~~~~~~~~~~l~~~gL~~~~-----~~~~~~LSgGqkqRvalAraL~~~p~ll 153 (354)
T TIGR02142 82 QEARLFPHLSVRGNLRYGMKRA---RPSERRISFERVIELLGIGHLL-----GRLPGRLSGGEKQRVAIGRALLSSPRLL 153 (354)
T ss_pred cCCccCCCCcHHHHHHHHhhcc---ChhHHHHHHHHHHHHcCChhHh-----cCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 9999999999999999875422 2234456789999999998766 4467899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 203 ILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 203 llDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
||||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|+++..|+++++..
T Consensus 154 lLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (354)
T TIGR02142 154 LMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQ-EVLRLADRVVVLEDGRVAAAGPIAEVWA 221 (354)
T ss_pred EEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEEECCHHHHhc
Confidence 9999999999999999999999998766899999999997 5889999999999999999999988743
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-44 Score=384.38 Aligned_cols=206 Identities=28% Similarity=0.454 Sum_probs=184.8
Q ss_pred cccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc-------hhhcccEEEEc
Q 006505 50 EAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-------AQFRKVSGYVT 122 (643)
Q Consensus 50 ~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~-------~~~~~~i~yv~ 122 (643)
+++++|+++.+ |+|+++++||+++|+||||||||||||+|+|+.+|++|+|.++|+++.. ...++.++|++
T Consensus 5 ~l~k~~~~~~~--~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~ 82 (352)
T PRK11144 5 NFKQQLGDLCL--TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVF 82 (352)
T ss_pred EEEEEeCCEEE--EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEc
Confidence 77888887643 8999999999999999999999999999999999999999999987642 23467899999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEE
Q 006505 123 QRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVL 202 (643)
Q Consensus 123 Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~il 202 (643)
|+..+++.+||+||+.++.. ...+++++++++.+||++.. ++.+++|||||||||+|||||+.+|++|
T Consensus 83 q~~~l~~~~tv~enl~~~~~-------~~~~~~~~~~l~~~gl~~~~-----~~~~~~LSgGq~qRvalaraL~~~p~ll 150 (352)
T PRK11144 83 QDARLFPHYKVRGNLRYGMA-------KSMVAQFDKIVALLGIEPLL-----DRYPGSLSGGEKQRVAIGRALLTAPELL 150 (352)
T ss_pred CCcccCCCCcHHHHHHhhhh-------hhhHHHHHHHHHHcCCchhh-----hCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 99999999999999988642 12345788999999998766 4467899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 203 ILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 203 llDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
||||||+|||+.++..+.+.|++++++.|+|+|++|||++ ++.+++|++++|++|+++..|+++++.
T Consensus 151 LLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~i~ 217 (352)
T PRK11144 151 LMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLD-EILRLADRVVVLEQGKVKAFGPLEEVW 217 (352)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCEEEEEeCCEEEEecCHHHHH
Confidence 9999999999999999999999998766899999999997 588999999999999999999998875
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-44 Score=367.72 Aligned_cols=222 Identities=24% Similarity=0.390 Sum_probs=190.0
Q ss_pred hhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCC-----CCccEEEECCCcCCc-----hh
Q 006505 44 ELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLT-----PQSGSTFVNGSPIDK-----AQ 113 (643)
Q Consensus 44 ~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~-----~~~G~I~~~g~~~~~-----~~ 113 (643)
.+++++|++++|+++++|+|+|+++++||+++|+||||||||||+++|+|+.+ |++|+|.++|+++.. ..
T Consensus 12 ~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~ 91 (260)
T PRK10744 12 SKIQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIAL 91 (260)
T ss_pred ceEEEEEEEEEeCCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHH
Confidence 45778999999988889999999999999999999999999999999999986 479999999988732 24
Q ss_pred hcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHH
Q 006505 114 FRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGF 193 (643)
Q Consensus 114 ~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~ 193 (643)
+++.++|++|++.+++ .|++||+.+........+.++.+++++++++.+++.+...... ++.+.+||||||||++||+
T Consensus 92 ~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~Gq~qrv~lar 169 (260)
T PRK10744 92 LRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKL-HQSGYSLSGGQQQRLCIAR 169 (260)
T ss_pred HhcceEEEecCCccCc-CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHH-hcCCCCCCHHHHHHHHHHH
Confidence 5678999999998888 7999999887543212344455667899999999843211111 4567899999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 194 DVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 194 aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
||+.+|++|+|||||+|||+.++..+.+.|++++ + +.|||++||+++ ++.+++|++++|++|+++..|+++++.
T Consensus 170 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 243 (260)
T PRK10744 170 GIAIRPEVLLLDEPCSALDPISTGRIEELITELK-Q-DYTVVIVTHNMQ-QAARCSDYTAFMYLGELIEFGNTDTIF 243 (260)
T ss_pred HHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999999999999995 3 789999999997 578899999999999999999988764
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-44 Score=360.37 Aligned_cols=211 Identities=33% Similarity=0.446 Sum_probs=183.5
Q ss_pred hhhhcccccccccc----cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---h---h
Q 006505 44 ELSKLEEAADSDGV----RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---A---Q 113 (643)
Q Consensus 44 ~~~~~~~~~~~~~~----~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~---~ 113 (643)
+++++++++++|++ +.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. . .
T Consensus 5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 84 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84 (228)
T ss_pred ceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHH
Confidence 35778999999875 359999999999999999999999999999999999999999999999987743 1 1
Q ss_pred h-cccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHH
Q 006505 114 F-RKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIG 192 (643)
Q Consensus 114 ~-~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia 192 (643)
. ++.++|++|++.+++.+|+.||+.+....+ ....++.++++.++++.+|+.+..+ +.+..||||||||++||
T Consensus 85 ~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~Ge~qrl~la 158 (228)
T PRK10584 85 LRAKHVGFVFQSFMLIPTLNALENVELPALLR-GESSRQSRNGAKALLEQLGLGKRLD-----HLPAQLSGGEQQRVALA 158 (228)
T ss_pred HHhheEEEEEcccccCCCcCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCHhHhh-----CChhhCCHHHHHHHHHH
Confidence 2 357999999999999999999998865433 2234455678899999999987664 46779999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEE
Q 006505 193 FDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLH 262 (643)
Q Consensus 193 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~ 262 (643)
++|+.+|++++|||||+|||+.++..+.+.|++++++.|.|||++|||++ .+ +.+|++++|++|++++
T Consensus 159 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~g~i~~ 226 (228)
T PRK10584 159 RAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-LA-ARCDRRLRLVNGQLQE 226 (228)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEe
Confidence 99999999999999999999999999999999998756899999999997 35 5699999999999875
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-45 Score=365.04 Aligned_cols=210 Identities=28% Similarity=0.446 Sum_probs=195.6
Q ss_pred cccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc------hhh-cccEEEEccCCC
Q 006505 54 SDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK------AQF-RKVSGYVTQRDT 126 (643)
Q Consensus 54 ~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~------~~~-~~~i~yv~Q~~~ 126 (643)
+.|...-++|+|++++.||+..|||-||||||||+++|.++.+|+.|+|+++|+++.. .++ |+.+++|+|+..
T Consensus 37 ~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~Fa 116 (386)
T COG4175 37 KTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFA 116 (386)
T ss_pred hhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhc
Confidence 4556668899999999999999999999999999999999999999999999998743 233 467999999999
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q 006505 127 LFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDE 206 (643)
Q Consensus 127 l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDE 206 (643)
|+|+.||.||..|+..++ +.++++.++++.++|+.+||+... +++|.+|||||||||.|||||+.+|+|||+||
T Consensus 117 LlPhrtVl~Nv~fGLev~-Gv~~~er~~~a~~~l~~VgL~~~~-----~~yp~eLSGGMqQRVGLARAla~~~~IlLMDE 190 (386)
T COG4175 117 LLPHRTVLENVAFGLEVQ-GVPKAEREERALEALELVGLEGYA-----DKYPNELSGGMQQRVGLARALANDPDILLMDE 190 (386)
T ss_pred cccchhHhhhhhcceeec-CCCHHHHHHHHHHHHHHcCchhhh-----hcCcccccchHHHHHHHHHHHccCCCEEEecC
Confidence 999999999999998876 568899999999999999999988 45889999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 207 PTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 207 PtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
|+|+|||--+.++.+.|.++.++.++|||++|||++ |+.++.|||.+|++|+++..|+|+|+.
T Consensus 191 aFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLd-EAlriG~rIaimkdG~ivQ~Gtp~eIl 253 (386)
T COG4175 191 AFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLD-EALRIGDRIAIMKDGEIVQVGTPEEIL 253 (386)
T ss_pred chhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHHhccceEEEecCCeEEEeCCHHHHH
Confidence 999999999999999999999888999999999998 799999999999999999999999986
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-44 Score=360.46 Aligned_cols=217 Identities=33% Similarity=0.519 Sum_probs=192.2
Q ss_pred hcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc-hhhcccEEEEccCC
Q 006505 47 KLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-AQFRKVSGYVTQRD 125 (643)
Q Consensus 47 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~-~~~~~~i~yv~Q~~ 125 (643)
.+++++++|+.+.+++|+|+++++||+++|+||||||||||+++|+|.++|++|+|.++|+++.. ...++.++|++|++
T Consensus 2 ~~~~l~~~~~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~ 81 (232)
T cd03300 2 ELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQNY 81 (232)
T ss_pred EEEeEEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEeccc
Confidence 46788899988899999999999999999999999999999999999999999999999998753 22356799999999
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q 006505 126 TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILD 205 (643)
Q Consensus 126 ~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlD 205 (643)
.+++.+|++||+.+....+ +...+..+++++++++.+|+++..+ ..+..||||||||++||++|+.+|++++||
T Consensus 82 ~~~~~~t~~~nl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~lS~G~~qrl~laral~~~p~llllD 155 (232)
T cd03300 82 ALFPHLTVFENIAFGLRLK-KLPKAEIKERVAEALDLVQLEGYAN-----RKPSQLSGGQQQRVAIARALVNEPKVLLLD 155 (232)
T ss_pred ccCCCCcHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCchhhc-----CChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 9999999999998876543 2233445567889999999987664 466899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 206 EPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 206 EPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
|||+|||+.++..+.+.|++++++.|+|||+++|+++ ++.+++|++++|++|++++.|+.+++.
T Consensus 156 EP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~i~~l~~G~~~~~~~~~~~~ 219 (232)
T cd03300 156 EPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQE-EALTMSDRIAVMNKGKIQQIGTPEEIY 219 (232)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEecCCHHHHH
Confidence 9999999999999999999998755899999999997 488999999999999999999877654
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-44 Score=364.49 Aligned_cols=213 Identities=30% Similarity=0.450 Sum_probs=187.2
Q ss_pred hhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEEEEc
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGYVT 122 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~yv~ 122 (643)
++++|++++|+++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ...++.++|++
T Consensus 4 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~ 83 (241)
T PRK14250 4 IEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVF 83 (241)
T ss_pred EEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEe
Confidence 457889999988899999999999999999999999999999999999999999999999988642 34567899999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCh-hhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCE
Q 006505 123 QRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLE-HVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKV 201 (643)
Q Consensus 123 Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~-~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~i 201 (643)
|++.+++ .||+||+.+....+ + ...+++.++++.+|++ +.. ++.+..||||||||++||+||+.+|++
T Consensus 84 q~~~~~~-~tv~e~l~~~~~~~-~----~~~~~~~~~l~~~~l~~~~~-----~~~~~~LS~G~~qrl~la~al~~~p~l 152 (241)
T PRK14250 84 QQPHLFE-GTVKDNIEYGPMLK-G----EKNVDVEYYLSIVGLNKEYA-----TRDVKNLSGGEAQRVSIARTLANNPEV 152 (241)
T ss_pred cCchhch-hhHHHHHhcchhhc-C----cHHHHHHHHHHHcCCCHHHh-----hCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 9998887 59999998754322 1 1235678899999996 444 346789999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 202 LILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 202 lllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
++|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|+++..|+++++.
T Consensus 153 lllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (241)
T PRK14250 153 LLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNME-QAKRIGDYTAFLNKGILVEYAKTYDFF 220 (241)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH-HHHHhCCEEEEEeCCEEEEeCCHHHHh
Confidence 99999999999999999999999998755899999999997 588899999999999999999988763
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-44 Score=364.93 Aligned_cols=221 Identities=22% Similarity=0.375 Sum_probs=188.2
Q ss_pred hhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcC---CCC--CccEEEECCCcCCc-----hhh
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGK---LTP--QSGSTFVNGSPIDK-----AQF 114 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~---~~~--~~G~I~~~g~~~~~-----~~~ 114 (643)
++++++++++|+.+++|+|+|+++++||+++|+||||||||||+|+|+|+ .+| ++|+|.++|+++.. ...
T Consensus 3 ~l~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 82 (250)
T PRK14245 3 KIDARDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDEL 82 (250)
T ss_pred EEEEEEEEEEECCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHH
Confidence 45688999999888999999999999999999999999999999999997 454 48999999998742 245
Q ss_pred cccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHH
Q 006505 115 RKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFD 194 (643)
Q Consensus 115 ~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~a 194 (643)
++.++|++|++.+++ .|++||+.+....+.....+..+++++++++.+|+.+...+.. ++.+..||||||||++||++
T Consensus 83 ~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qrv~lara 160 (250)
T PRK14245 83 RKNVGMVFQRPNPFP-KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKL-KESAFALSGGQQQRLCIARA 160 (250)
T ss_pred hhheEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhh-hCCcccCCHHHHHHHHHHHH
Confidence 678999999998887 5999999887544321123334567889999999864321111 45678999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 195 VIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 195 L~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
|+.+|++++|||||+|||+.++..+.+.|++++ + ++|||++||+++ ++.+++|++++|++|++++.|+++++.
T Consensus 161 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiiivtH~~~-~~~~~~d~v~~l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 161 MAVSPSVLLMDEPASALDPISTAKVEELIHELK-K-DYTIVIVTHNMQ-QAARVSDKTAFFYMGEMVEYDDTKKIF 233 (250)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHH-HHHhhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999999999995 3 799999999997 588999999999999999999998874
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-44 Score=358.79 Aligned_cols=213 Identities=43% Similarity=0.705 Sum_probs=183.5
Q ss_pred hhcccccccccc----cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCC---CCccEEEECCCcCCchhhcccE
Q 006505 46 SKLEEAADSDGV----RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLT---PQSGSTFVNGSPIDKAQFRKVS 118 (643)
Q Consensus 46 ~~~~~~~~~~~~----~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~---~~~G~I~~~g~~~~~~~~~~~i 118 (643)
..+++++.++.+ +++|+|+|+++++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++....+++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i 83 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCV 83 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccE
Confidence 346677777753 689999999999999999999999999999999999999 8999999999987655667889
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhcCCC--CHHHHHHHHHH-HHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHH
Q 006505 119 GYVTQRDTLFPLLTVEETLMFSAKLRLRL--PQAQLRARVKS-LVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDV 195 (643)
Q Consensus 119 ~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~--~~~~~~~~v~~-~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL 195 (643)
+|++|++.+++.+||+||+.+......+. ..+...+++++ .++.+++.+.. ++.++.||||||||++||++|
T Consensus 84 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~LS~G~~qrl~laral 158 (226)
T cd03234 84 AYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIG-----GNLVKGISGGERRRVSIAVQL 158 (226)
T ss_pred EEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhh-----cccccCcCHHHHHHHHHHHHH
Confidence 99999999999999999999876543211 22223334555 89999987665 446789999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEec
Q 006505 196 IHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHG 264 (643)
Q Consensus 196 ~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 264 (643)
+.+|++++|||||+|||+.++..+.+.|++++++ |.|+|++||++..++.+++|++++|++|++++.|
T Consensus 159 ~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~-~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 159 LWDPKVLILDEPTSGLDSFTALNLVSTLSQLARR-NRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999999999999999999999999999865 8999999999853589999999999999998765
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-43 Score=365.86 Aligned_cols=222 Identities=23% Similarity=0.397 Sum_probs=190.1
Q ss_pred hhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCC-----CccEEEECCCcCC-----chhh
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTP-----QSGSTFVNGSPID-----KAQF 114 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~-----~~G~I~~~g~~~~-----~~~~ 114 (643)
+++++|++++|+++++|+|+|+++++||+++|+||||||||||||+|+|+.+| ++|+|.++|+++. ...+
T Consensus 4 ~l~i~~v~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~ 83 (258)
T PRK14241 4 RIDVKDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAV 83 (258)
T ss_pred cEEEeeEEEEECCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHH
Confidence 46789999999888999999999999999999999999999999999999874 6999999998763 1345
Q ss_pred cccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHH
Q 006505 115 RKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFD 194 (643)
Q Consensus 115 ~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~a 194 (643)
++.++|++|++.+++.+||+||+.+....+...+.++.+++++++++.+|+.+...... ++.+.+|||||||||+||+|
T Consensus 84 ~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qrv~lara 162 (258)
T PRK14241 84 RRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRL-DKPGGGLSGGQQQRLCIARA 162 (258)
T ss_pred hcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHh-hCCcccCCHHHHHHHHHHHH
Confidence 67899999999999999999999987654321234455667889999999842111111 45778999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEe------CCeEEEecChhH
Q 006505 195 VIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLA------NGSVLHHGTVDL 268 (643)
Q Consensus 195 L~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~------~G~iv~~G~~~~ 268 (643)
|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+++|++++|+ +|++++.|++++
T Consensus 163 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tviivsH~~~-~~~~~~d~i~~l~~~~~~~~g~i~~~~~~~~ 239 (258)
T PRK14241 163 IAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ--DYTIVIVTHNMQ-QAARVSDQTAFFNLEATGKPGRLVEIDDTEK 239 (258)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEecCHH-HHHHhCCEEEEEecccCCCCceEEecCCHHH
Confidence 9999999999999999999999999999999963 689999999997 5888999999997 799999999887
Q ss_pred HH
Q 006505 269 LS 270 (643)
Q Consensus 269 ~~ 270 (643)
+.
T Consensus 240 ~~ 241 (258)
T PRK14241 240 IF 241 (258)
T ss_pred HH
Confidence 64
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-44 Score=368.62 Aligned_cols=222 Identities=21% Similarity=0.379 Sum_probs=190.2
Q ss_pred hhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCC-----CccEEEECCCcCCc-----hh
Q 006505 44 ELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTP-----QSGSTFVNGSPIDK-----AQ 113 (643)
Q Consensus 44 ~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~-----~~G~I~~~g~~~~~-----~~ 113 (643)
+.++++|++++|+++.+|+|+|+++++||+++|+|||||||||||++|+|+.+| ++|+|+++|+++.. ..
T Consensus 18 ~~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~ 97 (267)
T PRK14235 18 IKMRARDVSVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVE 97 (267)
T ss_pred ceEEEEeEEEEECCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHH
Confidence 357899999999988999999999999999999999999999999999999874 89999999988742 24
Q ss_pred hcccEEEEccCCCCCCCCCHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHH
Q 006505 114 FRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLR-LPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIG 192 (643)
Q Consensus 114 ~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~-~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia 192 (643)
+++.++|++|++.+++. ||.||+.+....+.. .+.++..++++++++.+|+.+...... ++.+++||||||||++||
T Consensus 98 ~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgGq~qrv~la 175 (267)
T PRK14235 98 LRARVGMVFQKPNPFPK-SIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRL-HEPGTGLSGGQQQRLCIA 175 (267)
T ss_pred HhhceEEEecCCCCCCC-cHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHh-hCCcccCCHHHHHHHHHH
Confidence 56789999999988885 999999987643311 123444567889999999964221111 456789999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 193 FDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 193 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+++|++++|++|+++..|+++++.
T Consensus 176 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~--~~tiiivtH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14235 176 RAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ--NYTIVIVTHSMQ-QAARVSQRTAFFHLGNLVEVGDTEKMF 250 (267)
T ss_pred HHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc--CCeEEEEEcCHH-HHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999964 689999999997 478899999999999999999987763
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-44 Score=378.22 Aligned_cols=223 Identities=21% Similarity=0.255 Sum_probs=189.0
Q ss_pred hhhcccccccc----cccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCC----CCccEEEECCCcCCc---hh
Q 006505 45 LSKLEEAADSD----GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLT----PQSGSTFVNGSPIDK---AQ 113 (643)
Q Consensus 45 ~~~~~~~~~~~----~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~----~~~G~I~~~g~~~~~---~~ 113 (643)
+++++|++++| +.+.+|+|||++|++||+++|+|+||||||||+++|+|+.+ |++|+|.++|+++.. ..
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 46788999998 44679999999999999999999999999999999999986 579999999998743 11
Q ss_pred ----hcccEEEEccCCC--CCCCCCHHHHHHHHHHhc-C-C---CCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCC
Q 006505 114 ----FRKVSGYVTQRDT--LFPLLTVEETLMFSAKLR-L-R---LPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGIS 182 (643)
Q Consensus 114 ----~~~~i~yv~Q~~~--l~~~lTv~E~l~~~~~~~-~-~---~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LS 182 (643)
.++.++||+|++. +.|.+||.+++.+..... . + ...++.++++.++++.+||.+..+ ..+.++.+||
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~--~~~~~p~~LS 160 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKD--AMRSFPYELT 160 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHH--HHhCCchhCC
Confidence 1357999999975 678899999997643211 0 1 112344567899999999975321 1256789999
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEE
Q 006505 183 GGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLH 262 (643)
Q Consensus 183 GGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~ 262 (643)
|||||||+||+||+.+|++||+||||+|||+.++.+++++|+++.++.|.|||++|||++ .+.+++|+|++|++|++++
T Consensus 161 gG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~-~v~~~~dri~vm~~G~ive 239 (330)
T PRK15093 161 EGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ-MLSQWADKINVLYCGQTVE 239 (330)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999998766999999999997 4889999999999999999
Q ss_pred ecChhHHH
Q 006505 263 HGTVDLLS 270 (643)
Q Consensus 263 ~G~~~~~~ 270 (643)
.|+++++.
T Consensus 240 ~g~~~~i~ 247 (330)
T PRK15093 240 TAPSKELV 247 (330)
T ss_pred ECCHHHHH
Confidence 99988764
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-44 Score=372.22 Aligned_cols=217 Identities=23% Similarity=0.400 Sum_probs=187.7
Q ss_pred hhccccccccccc-----ceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCC--------ch
Q 006505 46 SKLEEAADSDGVR-----RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPID--------KA 112 (643)
Q Consensus 46 ~~~~~~~~~~~~~-----~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~--------~~ 112 (643)
++++|++++|+++ .+|+|+|+++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++. ..
T Consensus 7 l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 86 (289)
T PRK13645 7 IILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVK 86 (289)
T ss_pred EEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHH
Confidence 5688999999764 4999999999999999999999999999999999999999999999998763 12
Q ss_pred hhcccEEEEccCCC--CCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCh-hhhhhhcCCCcCCCCCHHHHHHH
Q 006505 113 QFRKVSGYVTQRDT--LFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLE-HVAMARVGDDRVRGISGGERRRV 189 (643)
Q Consensus 113 ~~~~~i~yv~Q~~~--l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~-~~~~~~vg~~~~~~LSGGerqRv 189 (643)
.+++.++|++|++. +++ .|++||+.+..... ....++..++++++++.++|. +.. ++.++.||||||||+
T Consensus 87 ~~~~~i~~v~q~~~~~~~~-~tv~enl~~~~~~~-~~~~~~~~~~~~~ll~~~~L~~~~~-----~~~~~~LS~Gq~qrv 159 (289)
T PRK13645 87 RLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGPVNL-GENKQEAYKKVPELLKLVQLPEDYV-----KRSPFELSGGQKRRV 159 (289)
T ss_pred HHhccEEEEEeCcchhhhh-hHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCChhHh-----cCChhhCCHHHHHHH
Confidence 45678999999973 444 59999999865422 223444556788999999994 455 446789999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHH
Q 006505 190 SIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLL 269 (643)
Q Consensus 190 ~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 269 (643)
+||+||+.+|++|||||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|++++.|+++++
T Consensus 160 ~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 238 (289)
T PRK13645 160 ALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVIVMHEGKVISIGSPFEI 238 (289)
T ss_pred HHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999998756899999999997 58899999999999999999998876
Q ss_pred H
Q 006505 270 S 270 (643)
Q Consensus 270 ~ 270 (643)
.
T Consensus 239 ~ 239 (289)
T PRK13645 239 F 239 (289)
T ss_pred h
Confidence 4
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=365.29 Aligned_cols=221 Identities=24% Similarity=0.387 Sum_probs=189.4
Q ss_pred hhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCc-----CCc---hh--
Q 006505 44 ELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSP-----IDK---AQ-- 113 (643)
Q Consensus 44 ~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~-----~~~---~~-- 113 (643)
+++++++++++|+++.+|+|+|+++++||+++|+||||||||||+|+|+|+++|++|+|.++|++ +.. ..
T Consensus 5 ~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~ 84 (258)
T PRK11701 5 PLLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERR 84 (258)
T ss_pred ceEEEeeeEEEcCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHH
Confidence 35778999999988899999999999999999999999999999999999999999999999987 532 11
Q ss_pred --hcccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChh-hhhhhcCCCcCCCCCHHHHHH
Q 006505 114 --FRKVSGYVTQRD--TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEH-VAMARVGDDRVRGISGGERRR 188 (643)
Q Consensus 114 --~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~-~~~~~vg~~~~~~LSGGerqR 188 (643)
.++.++|++|++ .+++.+|+.||+.+...........+.++++.++++.+++.+ .. ++.+..||||||||
T Consensus 85 ~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~LS~Gq~qr 159 (258)
T PRK11701 85 RLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARI-----DDLPTTFSGGMQQR 159 (258)
T ss_pred HHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHH-----hCCCccCCHHHHHH
Confidence 245799999997 367788999999765322111123344567889999999963 44 34678999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhH
Q 006505 189 VSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDL 268 (643)
Q Consensus 189 v~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 268 (643)
++|||||+.+|++|+|||||+|||+.++..+.+.|++++++.|.|||++||+++ .+.+++|++++|++|++++.|++++
T Consensus 160 l~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~ 238 (258)
T PRK11701 160 LQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLAHRLLVMKQGRVVESGLTDQ 238 (258)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999999999999998756899999999997 4778999999999999999999887
Q ss_pred HH
Q 006505 269 LS 270 (643)
Q Consensus 269 ~~ 270 (643)
+.
T Consensus 239 ~~ 240 (258)
T PRK11701 239 VL 240 (258)
T ss_pred Hh
Confidence 63
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=355.00 Aligned_cols=210 Identities=27% Similarity=0.419 Sum_probs=182.7
Q ss_pred hcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc-hhhcccEEEEccCC
Q 006505 47 KLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-AQFRKVSGYVTQRD 125 (643)
Q Consensus 47 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~-~~~~~~i~yv~Q~~ 125 (643)
++++++++|+. +++|+|+++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++.. ...++.++|++|++
T Consensus 2 ~~~~l~~~~~~--~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~ 79 (213)
T TIGR01277 2 ALDKVRYEYEH--LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQEN 79 (213)
T ss_pred eEEeeeEEeCC--cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccC
Confidence 46788888863 5789999999999999999999999999999999999999999999998743 23567799999999
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q 006505 126 TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILD 205 (643)
Q Consensus 126 ~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlD 205 (643)
.+++.+|+.||+.+....... ..++.+++++++++.+|+++.. ++.++.||||||||++||++|+.+|++++||
T Consensus 80 ~~~~~~t~~en~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~LS~G~~qrl~laral~~~p~llllD 153 (213)
T TIGR01277 80 NLFAHLTVRQNIGLGLHPGLK-LNAEQQEKVVDAAQQVGIADYL-----DRLPEQLSGGQRQRVALARCLVRPNPILLLD 153 (213)
T ss_pred ccCCCCcHHHHHHhHhhccCC-ccHHHHHHHHHHHHHcCcHHHh-----hCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 999999999999876432211 1223356788999999998766 4467899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecC
Q 006505 206 EPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGT 265 (643)
Q Consensus 206 EPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 265 (643)
|||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|+++..|+
T Consensus 154 EPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~-~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 154 EPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCeEEEEECCeEEEecC
Confidence 9999999999999999999998755899999999997 4788999999999999998874
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-44 Score=358.29 Aligned_cols=209 Identities=27% Similarity=0.494 Sum_probs=185.6
Q ss_pred hcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEccCCC
Q 006505 47 KLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDT 126 (643)
Q Consensus 47 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~ 126 (643)
++++++++|+++.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... ++.++|++|++.
T Consensus 2 ~l~~v~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~-~~~~~~~~q~~~ 80 (223)
T TIGR03740 2 ETKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD-LHKIGSLIESPP 80 (223)
T ss_pred EEEeEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc-cccEEEEcCCCC
Confidence 4678888888889999999999999999999999999999999999999999999999998775332 357999999999
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q 006505 127 LFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDE 206 (643)
Q Consensus 127 l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDE 206 (643)
+++.+|++||+.+....+. .. .+++.++++.+|+++..++ .+..||||||||++||++++.+|++++|||
T Consensus 81 ~~~~~t~~~~~~~~~~~~~-~~----~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~~rv~laral~~~p~llllDE 150 (223)
T TIGR03740 81 LYENLTARENLKVHTTLLG-LP----DSRIDEVLNIVDLTNTGKK-----KAKQFSLGMKQRLGIAIALLNHPKLLILDE 150 (223)
T ss_pred ccccCCHHHHHHHHHHHcC-CC----HHHHHHHHHHcCCcHHHhh-----hHhhCCHHHHHHHHHHHHHhcCCCEEEECC
Confidence 9999999999987765431 11 2467889999999876644 567999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhH
Q 006505 207 PTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDL 268 (643)
Q Consensus 207 PtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 268 (643)
||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+++|++++|++|++++.|++++
T Consensus 151 P~~~LD~~~~~~l~~~L~~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 151 PTNGLDPIGIQELRELIRSFPEQ-GITVILSSHILS-EVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred CccCCCHHHHHHHHHHHHHHHHC-CCEEEEEcCCHH-HHHHhcCEEEEEeCCEEEEecChhh
Confidence 99999999999999999999764 899999999997 4788999999999999999998753
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-44 Score=364.62 Aligned_cols=222 Identities=29% Similarity=0.467 Sum_probs=195.2
Q ss_pred hhcccccccccc----cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCC-C----CccEEEECCCcCCc---h-
Q 006505 46 SKLEEAADSDGV----RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLT-P----QSGSTFVNGSPIDK---A- 112 (643)
Q Consensus 46 ~~~~~~~~~~~~----~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~-~----~~G~I~~~g~~~~~---~- 112 (643)
++++|++..|.. ..+++||||++++||++||+|.|||||||+.++|.|+++ | .+|+|.++|+++.. +
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 457788777754 479999999999999999999999999999999999997 4 27999999997632 2
Q ss_pred --hhc-ccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHH
Q 006505 113 --QFR-KVSGYVTQRD--TLFPLLTVEETLMFSAKLRLRL-PQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGER 186 (643)
Q Consensus 113 --~~~-~~i~yv~Q~~--~l~~~lTv~E~l~~~~~~~~~~-~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGer 186 (643)
++| +.|+|||||+ .|.|.+||.+.+.-..+.+... .+++.++++.++|+.+|+.+.. .+.+.++.+||||||
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~--~~~~~YPhelSGGMr 159 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPE--RRLKSYPHELSGGMR 159 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHH--HHHhhCCcccCCcHH
Confidence 233 5799999995 6899999999998877654433 4667788999999999998643 223779999999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecCh
Q 006505 187 RRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTV 266 (643)
Q Consensus 187 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 266 (643)
|||.||.||+.+|++||.||||++||...+.+|+++|+++.++.|.++|++|||+.. +.++||||+||+.|++|+.|++
T Consensus 160 QRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~v-va~~aDri~VMYaG~iVE~g~~ 238 (316)
T COG0444 160 QRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGV-VAEIADRVAVMYAGRIVEEGPV 238 (316)
T ss_pred HHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhcceEEEEECcEEEEeCCH
Confidence 999999999999999999999999999999999999999999889999999999985 8999999999999999999999
Q ss_pred hHHH
Q 006505 267 DLLS 270 (643)
Q Consensus 267 ~~~~ 270 (643)
+++.
T Consensus 239 ~~i~ 242 (316)
T COG0444 239 EEIF 242 (316)
T ss_pred HHHh
Confidence 9875
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-43 Score=366.02 Aligned_cols=225 Identities=24% Similarity=0.398 Sum_probs=191.6
Q ss_pred hhhhhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCC--C---CccEEEECCCcCCc----
Q 006505 41 AQEELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLT--P---QSGSTFVNGSPIDK---- 111 (643)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~--~---~~G~I~~~g~~~~~---- 111 (643)
+..++++++|++++|+.+.+|+|+|+++++||+++|+||||||||||+++|+|+.+ | ++|+|.++|+++..
T Consensus 8 ~~~~~l~i~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~ 87 (259)
T PRK14274 8 MKQEVYQINGMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87 (259)
T ss_pred cCCceEEEeeEEEEECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccC
Confidence 34457889999999988899999999999999999999999999999999999987 3 58999999998742
Q ss_pred -hhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHH
Q 006505 112 -AQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVS 190 (643)
Q Consensus 112 -~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ 190 (643)
...++.++|++|++.+++. ||+||+.+....+....+++.+++++++++.+++.+..... -+..+++||||||||++
T Consensus 88 ~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-l~~~~~~LS~Gq~qrv~ 165 (259)
T PRK14274 88 LVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDR-LHTQALSLSGGQQQRLC 165 (259)
T ss_pred HHHHhhceEEEecCCccccc-CHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhh-hhCCcccCCHHHHHHHH
Confidence 2456789999999988886 99999988654332123344556788899999985421111 14577899999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 191 IGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 191 ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|+|++||+++ ++.+++|++++|++|+++..|+++++.
T Consensus 166 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 166 IARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE--KYTIVIVTHNMQ-QAARVSDQTAFFYMGELVECNDTNKMF 242 (259)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEEcCHH-HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999999999999999999999963 789999999997 588999999999999999999988764
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=360.40 Aligned_cols=217 Identities=29% Similarity=0.501 Sum_probs=191.9
Q ss_pred hcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc-hhhcccEEEEccCC
Q 006505 47 KLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-AQFRKVSGYVTQRD 125 (643)
Q Consensus 47 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~-~~~~~~i~yv~Q~~ 125 (643)
++++++++|+++++|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ...++.++|++|++
T Consensus 2 ~i~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~ 81 (237)
T TIGR00968 2 EIANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHY 81 (237)
T ss_pred EEEEEEEEECCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecCh
Confidence 46788889988899999999999999999999999999999999999999999999999988753 23456799999999
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q 006505 126 TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILD 205 (643)
Q Consensus 126 ~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlD 205 (643)
.+++.+|+.||+.+....+ +...+...+.++++++.+++.+..+ +.++.||||||||++||++|+.+|++++||
T Consensus 82 ~~~~~~t~~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~lS~G~~qrl~laral~~~p~llllD 155 (237)
T TIGR00968 82 ALFKHLTVRDNIAFGLEIR-KHPKAKIKARVEELLELVQLEGLGD-----RYPNQLSGGQRQRVALARALAVEPQVLLLD 155 (237)
T ss_pred hhccCCcHHHHHHhHHHhc-CCCHHHHHHHHHHHHHHcCCHhHhh-----CChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 9999999999998876543 2233444567889999999976664 466799999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 206 EPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 206 EPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
|||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|++++.|+.+++.
T Consensus 156 EP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~~ 219 (237)
T TIGR00968 156 EPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVVMSNGKIEQIGSPDEVY 219 (237)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEEEECCEEEEecCHHHHH
Confidence 9999999999999999999998755899999999997 578999999999999999999988764
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-44 Score=365.69 Aligned_cols=216 Identities=29% Similarity=0.467 Sum_probs=188.1
Q ss_pred hcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEEEEcc
Q 006505 47 KLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGYVTQ 123 (643)
Q Consensus 47 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~yv~Q 123 (643)
+++|+++.|+++.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ...++.++|++|
T Consensus 3 ~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q 82 (256)
T TIGR03873 3 RLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQ 82 (256)
T ss_pred eEEeEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEecc
Confidence 57888899988899999999999999999999999999999999999999999999999988643 344567999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCC
Q 006505 124 RDTLFPLLTVEETLMFSAKLR---LRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPK 200 (643)
Q Consensus 124 ~~~l~~~lTv~E~l~~~~~~~---~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~ 200 (643)
++.+++.+||+||+.+..... .....++..+++.++++.+++.+.. +..+..||||||||++||++|+.+|+
T Consensus 83 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~LS~G~~qrl~la~al~~~p~ 157 (256)
T TIGR03873 83 DSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLA-----DRDMSTLSGGERQRVHVARALAQEPK 157 (256)
T ss_pred cCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhh-----cCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 987788899999998753111 0111223445788999999998765 44678999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHH
Q 006505 201 VLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLL 269 (643)
Q Consensus 201 illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 269 (643)
+++|||||+|||+.++..+.+.|++++++ |.|||++||+++ .+.+++|++++|++|+++..|++++.
T Consensus 158 llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 224 (256)
T TIGR03873 158 LLLLDEPTNHLDVRAQLETLALVRELAAT-GVTVVAALHDLN-LAASYCDHVVVLDGGRVVAAGPPREV 224 (256)
T ss_pred EEEEcCccccCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEeCCCEEEecCHHHh
Confidence 99999999999999999999999999864 899999999997 58899999999999999999988765
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=363.55 Aligned_cols=221 Identities=25% Similarity=0.412 Sum_probs=189.5
Q ss_pred hhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCC--C---CccEEEECCCcCCc-----hhhc
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLT--P---QSGSTFVNGSPIDK-----AQFR 115 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~--~---~~G~I~~~g~~~~~-----~~~~ 115 (643)
++++|++++|+++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ | ++|+|.++|+++.. ..++
T Consensus 5 l~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~ 84 (252)
T PRK14256 5 VKLEQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIR 84 (252)
T ss_pred EEEEEEEEEeCCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhh
Confidence 568899999988889999999999999999999999999999999999986 4 58999999988742 2457
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHH
Q 006505 116 KVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDV 195 (643)
Q Consensus 116 ~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL 195 (643)
+.++|++|++.+++.+|++||+.+..........++.+++++++++.+++.+...... +..+..||||||||++||++|
T Consensus 85 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qrl~laral 163 (252)
T PRK14256 85 RRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRL-KSNAMELSGGQQQRLCIARTI 163 (252)
T ss_pred ccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHh-hCCcCcCCHHHHHHHHHHHHH
Confidence 7899999999999999999999876543211233444567889999999864221111 346789999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 196 IHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 196 ~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.++||++++|++|+++..|+++++.
T Consensus 164 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14256 164 AVKPEVILMDEPASALDPISTLKIEELIEELKE--KYTIIIVTHNMQ-QAARVSDYTAFFYMGDLVECGETKKIF 235 (252)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--CCcEEEEECCHH-HHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999974 589999999997 588999999999999999999988763
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-43 Score=368.68 Aligned_cols=219 Identities=25% Similarity=0.395 Sum_probs=191.7
Q ss_pred hhhcccccccccc--cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCc---cEEEECCCcCCc---hhhcc
Q 006505 45 LSKLEEAADSDGV--RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQS---GSTFVNGSPIDK---AQFRK 116 (643)
Q Consensus 45 ~~~~~~~~~~~~~--~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~---G~I~~~g~~~~~---~~~~~ 116 (643)
++++++++++|++ +++|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|+++.. ...++
T Consensus 5 ~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~ 84 (282)
T PRK13640 5 IVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIRE 84 (282)
T ss_pred eEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHh
Confidence 4678899999864 569999999999999999999999999999999999999987 999999998753 24567
Q ss_pred cEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHH
Q 006505 117 VSGYVTQRDT-LFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDV 195 (643)
Q Consensus 117 ~i~yv~Q~~~-l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL 195 (643)
.+||++|++. +++..||.||+.+..... ..+.++.++++.++++.+||++.. +.+++.||||||||++||+||
T Consensus 85 ~ig~v~q~~~~~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~~~-----~~~~~~LS~G~~qrv~laral 158 (282)
T PRK13640 85 KVGIVFQNPDNQFVGATVGDDVAFGLENR-AVPRPEMIKIVRDVLADVGMLDYI-----DSEPANLSGGQKQRVAIAGIL 158 (282)
T ss_pred heEEEEECHHHhhccCCHHHHHHhhHHhC-CCCHHHHHHHHHHHHHHCCChhHh-----cCCcccCCHHHHHHHHHHHHH
Confidence 8999999974 667789999998865432 234556667899999999998766 447789999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 196 IHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 196 ~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
+.+|++|+|||||+|||+.++..+.+.|++++++.|+|||++||+++. + ..+|++++|++|++++.|+++++.+
T Consensus 159 ~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~-~-~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 159 AVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDE-A-NMADQVLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999987568999999999974 5 5799999999999999999988753
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=355.03 Aligned_cols=203 Identities=30% Similarity=0.458 Sum_probs=179.4
Q ss_pred cccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc-------hhhcccEEEEc
Q 006505 50 EAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-------AQFRKVSGYVT 122 (643)
Q Consensus 50 ~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~-------~~~~~~i~yv~ 122 (643)
+++++|+++.+ |+|+++++ |+++|+||||||||||+++|+|+++|++|+|.++|.++.. ...++.++|++
T Consensus 5 ~l~~~~~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~ 81 (214)
T cd03297 5 DIEKRLPDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVF 81 (214)
T ss_pred eeeEecCCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEe
Confidence 77899998876 99999999 9999999999999999999999999999999999987632 13466899999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEE
Q 006505 123 QRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVL 202 (643)
Q Consensus 123 Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~il 202 (643)
|++.+++.+|++||+.+..... ..+..++++.++++.+|+++..+ +.+.+||||||||++||++|+.+|+++
T Consensus 82 q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv~la~al~~~p~ll 153 (214)
T cd03297 82 QQYALFPHLNVRENLAFGLKRK---RNREDRISVDELLDLLGLDHLLN-----RYPAQLSGGEKQRVALARALAAQPELL 153 (214)
T ss_pred cCCccCCCCCHHHHHHHHHhhC---CHHHHHHHHHHHHHHcCCHhHhh-----cCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999999999998765322 23334567889999999987653 467899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEec
Q 006505 203 ILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHG 264 (643)
Q Consensus 203 llDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 264 (643)
+|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|+++..|
T Consensus 154 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 154 LLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLS-EAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHH-HHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999998755899999999997 478899999999999998765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-43 Score=358.56 Aligned_cols=216 Identities=29% Similarity=0.491 Sum_probs=190.0
Q ss_pred hcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc-hhhcccEEEEccCC
Q 006505 47 KLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-AQFRKVSGYVTQRD 125 (643)
Q Consensus 47 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~-~~~~~~i~yv~Q~~ 125 (643)
.+++++++|+.+ +|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|+++|.++.. ...++.++|++|++
T Consensus 2 ~~~~l~~~~~~~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~ 80 (235)
T cd03299 2 KVENLSKDWKEF-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNY 80 (235)
T ss_pred eeEeEEEEeCCc-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeecC
Confidence 367888888764 8999999999999999999999999999999999999999999999988754 22357899999999
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q 006505 126 TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILD 205 (643)
Q Consensus 126 ~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlD 205 (643)
.+++.+|+.||+.+..... ..+..+..+++.++++.+|+.+..++ .++.||||||||++||+||+.+|++++||
T Consensus 81 ~~~~~~t~~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrl~laral~~~p~llllD 154 (235)
T cd03299 81 ALFPHMTVYKNIAYGLKKR-KVDKKEIERKVLEIAEMLGIDHLLNR-----KPETLSGGEQQRVAIARALVVNPKILLLD 154 (235)
T ss_pred ccCCCccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCChhHHhc-----CcccCCHHHHHHHHHHHHHHcCCCEEEEC
Confidence 9999999999998865432 22344556678899999999876644 66899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 206 EPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 206 EPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
|||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|++++.|++++..
T Consensus 155 EPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 218 (235)
T cd03299 155 EPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFE-EAWALADKVAIMLNGKLIQVGKPEEVF 218 (235)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 9999999999999999999998755899999999997 578899999999999999999987653
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-43 Score=361.85 Aligned_cols=220 Identities=23% Similarity=0.351 Sum_probs=188.4
Q ss_pred hhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCC---CCccEEEECCCcCCc---hhhcccEE
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLT---PQSGSTFVNGSPIDK---AQFRKVSG 119 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~---~~~G~I~~~g~~~~~---~~~~~~i~ 119 (643)
++++++++.|+.+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+ |++|+|.++|+++.. ..+++.++
T Consensus 3 ~~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~ 82 (246)
T PRK14269 3 AKTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVG 82 (246)
T ss_pred eeeeeeEEEECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEE
Confidence 467899999988899999999999999999999999999999999999974 689999999998743 34567899
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcC
Q 006505 120 YVTQRDTLFPLLTVEETLMFSAKLRLRL-PQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHD 198 (643)
Q Consensus 120 yv~Q~~~l~~~lTv~E~l~~~~~~~~~~-~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~ 198 (643)
|++|++.+++ .|++||+.+....+... ..+..+++++++++.+++.+...... ++.++.||||||||++|||+|+.+
T Consensus 83 ~~~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qrv~laral~~~ 160 (246)
T PRK14269 83 MVFQQPNVFV-KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKL-KQNALALSGGQQQRLCIARALAIK 160 (246)
T ss_pred EEecCCcccc-ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHh-cCCcccCCHHHHHHHHHHHHHhcC
Confidence 9999998887 59999999875443111 22344567889999999953221111 456789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 199 PKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 199 p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
|++++|||||+|||+.++..+.+.|++++ + |+|||++||+++ ++.+++|++++|++|++++.|++++..
T Consensus 161 p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 229 (246)
T PRK14269 161 PKLLLLDEPTSALDPISSGVIEELLKELS-H-NLSMIMVTHNMQ-QGKRVADYTAFFHLGELIEFGESKEFF 229 (246)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHh-C-CCEEEEEecCHH-HHHhhCcEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999986 3 899999999997 488899999999999999999988764
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-43 Score=362.78 Aligned_cols=221 Identities=27% Similarity=0.405 Sum_probs=187.8
Q ss_pred hhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCC--CC---CccEEEECCCcCCc-----hhh
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKL--TP---QSGSTFVNGSPIDK-----AQF 114 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~--~~---~~G~I~~~g~~~~~-----~~~ 114 (643)
++++++++++|+++.+|+|+|+++++||+++|+||||||||||+++|+|+. +| ++|+|.++|+++.. ..+
T Consensus 5 ~l~~~~l~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~ 84 (252)
T PRK14239 5 ILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDL 84 (252)
T ss_pred eEEEEeeEEEECCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhh
Confidence 567899999998889999999999999999999999999999999999985 36 48999999988732 235
Q ss_pred cccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHH
Q 006505 115 RKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFD 194 (643)
Q Consensus 115 ~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~a 194 (643)
++.++|++|++.+++ .||+||+.+....+.....+..++++.++++.+++.+...+. .++.++.||||||||++||+|
T Consensus 85 ~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LS~G~~qrv~lara 162 (252)
T PRK14239 85 RKEIGMVFQQPNPFP-MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDR-LHDSALGLSGGQQQRVCIARV 162 (252)
T ss_pred hhcEEEEecCCccCc-CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHH-HhcCcccCCHHHHHHHHHHHH
Confidence 678999999998887 799999998754331112333456788899999875321111 145778999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 195 VIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 195 L~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+++|++++|++|++++.|+++++.
T Consensus 163 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T PRK14239 163 LATSPKIILLDEPTSALDPISAGKIEETLLGLKD--DYTMLLVTRSMQ-QASRISDRTGFFLDGDLIEYNDTKQMF 235 (252)
T ss_pred HhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh--CCeEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999999999999964 689999999997 588999999999999999999988763
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-44 Score=337.05 Aligned_cols=219 Identities=29% Similarity=0.471 Sum_probs=199.9
Q ss_pred hhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc-------------
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK------------- 111 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~------------- 111 (643)
.+.++++.|+||...+|++||++.++|+++.|+|.|||||||+|+||.-+.+|+.|+|.+||+++..
T Consensus 6 ~l~v~dlHK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~ 85 (256)
T COG4598 6 ALEVEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADK 85 (256)
T ss_pred ceehhHHHhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCH
Confidence 4678899999999999999999999999999999999999999999999999999999999987621
Q ss_pred ---hhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHH
Q 006505 112 ---AQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRR 188 (643)
Q Consensus 112 ---~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqR 188 (643)
..+|.+.++|+|+..|+.++||.||+.-+-.--++.++++..++++.+|.++|+.+.. +.+|..|||||+||
T Consensus 86 ~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~-----~~YP~~LSGGQQQR 160 (256)
T COG4598 86 RQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKA-----DAYPAHLSGGQQQR 160 (256)
T ss_pred HHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhh-----hcCccccCchHHHH
Confidence 2356678999999999999999999976543334557888999999999999998877 45889999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhH
Q 006505 189 VSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDL 268 (643)
Q Consensus 189 v~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 268 (643)
++|||||+.+|+++++|||||+|||+-.-++++.++++|++ |+|.+++||.+.. ..+...+|+.|++|.+-++|+|++
T Consensus 161 ~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeE-grTMv~VTHEM~F-AR~Vss~v~fLh~G~iEE~G~P~q 238 (256)
T COG4598 161 VAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEE-GRTMVVVTHEMGF-ARDVSSHVIFLHQGKIEEEGPPEQ 238 (256)
T ss_pred HHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHh-CCeEEEEeeehhH-HHhhhhheEEeecceecccCChHH
Confidence 99999999999999999999999999999999999999986 9999999999986 788999999999999999999998
Q ss_pred HH
Q 006505 269 LS 270 (643)
Q Consensus 269 ~~ 270 (643)
+.
T Consensus 239 vf 240 (256)
T COG4598 239 VF 240 (256)
T ss_pred Hh
Confidence 74
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-43 Score=362.54 Aligned_cols=222 Identities=22% Similarity=0.348 Sum_probs=189.5
Q ss_pred hhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCC-----CccEEEECCCcCCc-----hh
Q 006505 44 ELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTP-----QSGSTFVNGSPIDK-----AQ 113 (643)
Q Consensus 44 ~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~-----~~G~I~~~g~~~~~-----~~ 113 (643)
++++++|++++|+++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| ++|+|.++|+++.. ..
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 82 (251)
T PRK14270 3 IKMESKNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVE 82 (251)
T ss_pred cEEEEEEeEEEECCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHH
Confidence 356789999999888999999999999999999999999999999999999875 79999999998742 23
Q ss_pred hcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHH
Q 006505 114 FRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGF 193 (643)
Q Consensus 114 ~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~ 193 (643)
.++.++|++|++.+++ +|++||+.+..........++.+++++++++.+++.+..... -+..+.+||||||||++||+
T Consensus 83 ~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LS~G~~qrv~lar 160 (251)
T PRK14270 83 LRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDD-LKKSALKLSGGQQQRLCIAR 160 (251)
T ss_pred HHhheEEEecCCCcCC-CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhH-hhCCcccCCHHHHHHHHHHH
Confidence 4677999999998888 899999998754331112344556788899999884211111 14577899999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 194 DVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 194 aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+++|++++|++|++++.|+++++.
T Consensus 161 al~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~--~~tiiivsH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 161 TIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK--EYTIVIVTHNMQ-QASRVSDYTAFFLMGDLIEFNKTEKIF 234 (251)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCeEEEEEcCHH-HHHHhcCEEEEEECCeEEEeCCHHHHh
Confidence 99999999999999999999999999999999875 589999999997 588999999999999999999988764
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-43 Score=361.27 Aligned_cols=221 Identities=25% Similarity=0.436 Sum_probs=189.4
Q ss_pred hhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCC-----CccEEEECCCcCCc-----hhh
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTP-----QSGSTFVNGSPIDK-----AQF 114 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~-----~~G~I~~~g~~~~~-----~~~ 114 (643)
++++++++++|+++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| ++|+|.++|.++.. ...
T Consensus 3 ~l~~~~l~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~ 82 (250)
T PRK14262 3 IIEIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEY 82 (250)
T ss_pred eEEEEeeEEEeCCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHh
Confidence 46789999999888999999999999999999999999999999999999874 79999999988642 235
Q ss_pred cccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHH
Q 006505 115 RKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFD 194 (643)
Q Consensus 115 ~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~a 194 (643)
++.++|++|++.+++ .|++||+.+..........+..++.++++++.+|+.+..+. ..++.+.+||||||||++||+|
T Consensus 83 ~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~LS~Gq~qr~~la~a 160 (250)
T PRK14262 83 RKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKS-ELNKPGTRLSGGQQQRLCIARA 160 (250)
T ss_pred hhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHH-HHhCChhhcCHHHHHHHHHHHH
Confidence 678999999998888 79999999875433212333445668889999998542211 1255788999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 195 VIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 195 L~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+++|++++|++|+++..|+++++.
T Consensus 161 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tili~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14262 161 LAVEPEVILLDEPTSALDPIATQRIEKLLEELSE--NYTIVIVTHNIG-QAIRIADYIAFMYRGELIEYGPTREIV 233 (250)
T ss_pred HhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc--CcEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 9999999999999999999999999999999864 689999999997 488999999999999999999988764
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-43 Score=357.63 Aligned_cols=205 Identities=34% Similarity=0.510 Sum_probs=180.0
Q ss_pred ccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc--hhhcccEEEEc-cCCCCCC
Q 006505 53 DSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK--AQFRKVSGYVT-QRDTLFP 129 (643)
Q Consensus 53 ~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~--~~~~~~i~yv~-Q~~~l~~ 129 (643)
++|+.+++|+|+|+++++||+++|+|||||||||||++|+|+.+|++|+|.++|++... ..+++.++|++ |++.+++
T Consensus 29 ~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 108 (236)
T cd03267 29 RKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWW 108 (236)
T ss_pred cccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCC
Confidence 57788899999999999999999999999999999999999999999999999987532 34567899998 5567888
Q ss_pred CCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 006505 130 LLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTS 209 (643)
Q Consensus 130 ~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPts 209 (643)
.+|++||+.+....+ ....++..++++++++.+|+.+..++ .+..||||||||++||++|+.+|++++|||||+
T Consensus 109 ~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~~~~~-----~~~~LS~G~~qrl~la~al~~~p~llllDEPt~ 182 (236)
T cd03267 109 DLPVIDSFYLLAAIY-DLPPARFKKRLDELSELLDLEELLDT-----PVRQLSLGQRMRAEIAAALLHEPEILFLDEPTI 182 (236)
T ss_pred CCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCChhHhcC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 999999998876543 22344455678899999999877644 567999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEec
Q 006505 210 GLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHG 264 (643)
Q Consensus 210 gLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 264 (643)
|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|++++.|
T Consensus 183 ~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 183 GLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEecC
Confidence 999999999999999998766899999999997 578899999999999998765
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-43 Score=364.60 Aligned_cols=224 Identities=22% Similarity=0.367 Sum_probs=188.9
Q ss_pred hhhhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCC-----CCccEEEECCCcCCc-----
Q 006505 42 QEELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLT-----PQSGSTFVNGSPIDK----- 111 (643)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~-----~~~G~I~~~g~~~~~----- 111 (643)
..++++++|++++|+++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+ |++|+|.++|+++..
T Consensus 18 ~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 97 (268)
T PRK14248 18 KEHILEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINV 97 (268)
T ss_pred CCceEEEEEEEEEeCCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccH
Confidence 3456889999999998899999999999999999999999999999999999864 689999999988742
Q ss_pred hhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHH
Q 006505 112 AQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSI 191 (643)
Q Consensus 112 ~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~i 191 (643)
..+++.++|++|++.+++. |++||+.+.............++.+.+.++.+++.+..... .++.+..||||||||++|
T Consensus 98 ~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LSgGq~qrl~l 175 (268)
T PRK14248 98 VNLRREIGMVFQKPNPFPK-SIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDR-LHSSALSLSGGQQQRLCI 175 (268)
T ss_pred HHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHH-HhcCcccCCHHHHHHHHH
Confidence 2356789999999988885 99999988654321112233455678889999885211111 145678999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 192 GFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 192 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
|++|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+++|++++|++|++++.|+++++.
T Consensus 176 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~~ 251 (268)
T PRK14248 176 ARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE--EYSIIIVTHNMQ-QALRVSDRTAFFLNGDLVEYDQTEQIF 251 (268)
T ss_pred HHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCEEEEEEeCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999999999999999964 689999999997 588899999999999999999987764
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-43 Score=366.29 Aligned_cols=218 Identities=24% Similarity=0.375 Sum_probs=188.3
Q ss_pred hhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCC--------ccEEEECCCcCCc---hhh
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQ--------SGSTFVNGSPIDK---AQF 114 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~--------~G~I~~~g~~~~~---~~~ 114 (643)
++++|++++|+++.+|+|+|+++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|+++.. ...
T Consensus 2 l~~~nl~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 81 (272)
T PRK13547 2 LTADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRL 81 (272)
T ss_pred eEEEEEEEEECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHH
Confidence 56789999999889999999999999999999999999999999999999998 9999999988742 345
Q ss_pred cccEEEEccCCCCCCCCCHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHH
Q 006505 115 RKVSGYVTQRDTLFPLLTVEETLMFSAKLRL---RLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSI 191 (643)
Q Consensus 115 ~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~---~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~i 191 (643)
++.++|++|++.+++.+||+||+.+...... ....++.+++++++++.+|+.+.. ++.+..|||||||||+|
T Consensus 82 ~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~LSgG~~qrv~l 156 (272)
T PRK13547 82 ARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALV-----GRDVTTLSGGELARVQF 156 (272)
T ss_pred HhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhh-----cCCcccCCHHHHHHHHH
Confidence 6678999999876666899999987532110 111133456788999999998765 44678999999999999
Q ss_pred HHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEE
Q 006505 192 GFDVI---------HDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLH 262 (643)
Q Consensus 192 a~aL~---------~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~ 262 (643)
|++|+ .+|++|+|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|++++
T Consensus 157 aral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~-~~~~~~d~i~~l~~G~i~~ 235 (272)
T PRK13547 157 ARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN-LAARHADRIAMLADGAIVA 235 (272)
T ss_pred HHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECCeEEE
Confidence 99999 5999999999999999999999999999998755899999999997 5788999999999999999
Q ss_pred ecChhHH
Q 006505 263 HGTVDLL 269 (643)
Q Consensus 263 ~G~~~~~ 269 (643)
.|+++++
T Consensus 236 ~g~~~~~ 242 (272)
T PRK13547 236 HGAPADV 242 (272)
T ss_pred ecCHHHH
Confidence 9998776
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-43 Score=363.97 Aligned_cols=223 Identities=22% Similarity=0.328 Sum_probs=191.5
Q ss_pred hhhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCC-----CCccEEEECCCcCCc-----h
Q 006505 43 EELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLT-----PQSGSTFVNGSPIDK-----A 112 (643)
Q Consensus 43 ~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~-----~~~G~I~~~g~~~~~-----~ 112 (643)
..+++++|++++|+.+++|+|+|+++++||+++|+|||||||||||++|+|+++ |++|+|.++|+++.. .
T Consensus 18 ~~~l~~~nl~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 97 (267)
T PRK14237 18 EIALSTKDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVY 97 (267)
T ss_pred CeEEEEeeEEEEECCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChH
Confidence 346789999999988999999999999999999999999999999999999986 479999999988742 2
Q ss_pred hhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHH
Q 006505 113 QFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIG 192 (643)
Q Consensus 113 ~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia 192 (643)
..++.++|++|++.+++ .||+||+.++........+++.++++.++++.+++.+..+... ++.+++||||||||++||
T Consensus 98 ~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~-~~~~~~LS~G~~qrl~la 175 (267)
T PRK14237 98 EMRKHIGMVFQRPNPFA-KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDL-HKSALTLSGGQQQRLCIA 175 (267)
T ss_pred HHhcceEEEecCCcccc-ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhh-cCCcccCCHHHHHHHHHH
Confidence 35678999999988888 5999999987543211234445667889999999854322212 557889999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 193 FDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 193 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
++|+.+|++++|||||+|||+.++..+.+.|++++ + +.|||++||+++ ++.++||++++|++|++++.|+++++.
T Consensus 176 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14237 176 RAIAVKPDILLMDEPASALDPISTMQLEETMFELK-K-NYTIIIVTHNMQ-QAARASDYTAFFYLGDLIEYDKTRNIF 250 (267)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-c-CCEEEEEecCHH-HHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999999995 3 789999999997 588999999999999999999988763
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-43 Score=359.58 Aligned_cols=220 Identities=25% Similarity=0.403 Sum_probs=187.5
Q ss_pred hhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCC-----CccEEEECCCcCCc-----hhhc
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTP-----QSGSTFVNGSPIDK-----AQFR 115 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~-----~~G~I~~~g~~~~~-----~~~~ 115 (643)
+++++++++|+++++++|+|+++++||+++|+||||||||||+++|+|+.+| ++|+|.++|+++.. ...+
T Consensus 4 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 83 (250)
T PRK14240 4 ISVKDLDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLR 83 (250)
T ss_pred EEEEEEEEEECCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHh
Confidence 5678999999888999999999999999999999999999999999998763 69999999988742 2456
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHH
Q 006505 116 KVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDV 195 (643)
Q Consensus 116 ~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL 195 (643)
+.++|++|++.+++ +|++||+.+....+...+.++.+++++++++.+++.+...... ++.+.+||||||||++||++|
T Consensus 84 ~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~G~~qrv~laral 161 (250)
T PRK14240 84 KRVGMVFQQPNPFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRL-KKSALGLSGGQQQRLCIARAL 161 (250)
T ss_pred ccEEEEecCCccCc-ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHH-hcCCCCCCHHHHHHHHHHHHH
Confidence 78999999998888 8999999987543321234445677888999998753211111 456789999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 196 IHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 196 ~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
+.+|++++|||||+|||+.++..+.+.|++++ + ++|||++||+++ .+.+++|++++|++|+++..|+++++.
T Consensus 162 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (250)
T PRK14240 162 AVEPEVLLMDEPTSALDPISTLKIEELIQELK-K-DYTIVIVTHNMQ-QASRISDKTAFFLNGEIVEFGDTVDLF 233 (250)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEEeCHH-HHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999995 3 789999999997 588999999999999999999988763
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-43 Score=364.13 Aligned_cols=218 Identities=23% Similarity=0.347 Sum_probs=190.3
Q ss_pred hhhcccccccccc---cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccE
Q 006505 45 LSKLEEAADSDGV---RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVS 118 (643)
Q Consensus 45 ~~~~~~~~~~~~~---~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i 118 (643)
++++++++++|+. +.+|+|+|+++++||+++|+|+||||||||+++|+|+.+|++|+|.++|+++.. ...++.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 4678899999864 359999999999999999999999999999999999999999999999998743 3456789
Q ss_pred EEEccCCC-CCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhc
Q 006505 119 GYVTQRDT-LFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIH 197 (643)
Q Consensus 119 ~yv~Q~~~-l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~ 197 (643)
+|++|++. .++..||.||+.+..... ..+.++..++++++++.+||.+..+ +++..||||||||++||++|+.
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv~lAraL~~ 157 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQ-GIPREEMIKRVDEALLAVNMLDFKT-----REPARLSGGQKQRVAVAGIIAL 157 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHc-CCCHHHHHHHHHHHHHHCCCHhHhh-----CCcccCCHHHHHHHHHHHHHHc
Confidence 99999974 566789999998765432 2244455667899999999987664 4678999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 198 DPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 198 ~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
+|+++||||||+|||+.++..+.+.|++++++.|+|||++||+++. +. .+|++++|++|+++..|+++++.
T Consensus 158 ~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~-~~-~~d~i~~l~~G~i~~~g~~~~~~ 228 (277)
T PRK13642 158 RPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDE-AA-SSDRILVMKAGEIIKEAAPSELF 228 (277)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HH-hCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999987569999999999974 54 69999999999999999998764
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-43 Score=359.43 Aligned_cols=222 Identities=23% Similarity=0.386 Sum_probs=188.0
Q ss_pred hhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCC-----ccEEEECCCcCCc-----hhh
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQ-----SGSTFVNGSPIDK-----AQF 114 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~-----~G~I~~~g~~~~~-----~~~ 114 (643)
+++++|++++|+++++|+|+|+++++||+++|+||||||||||+|+|+|+++|. +|+|.++|+++.. ..+
T Consensus 4 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (252)
T PRK14272 4 LLSAQDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAM 83 (252)
T ss_pred EEEEeeeEEEECCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHh
Confidence 456889999998889999999999999999999999999999999999998864 8999999988642 245
Q ss_pred cccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHH
Q 006505 115 RKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFD 194 (643)
Q Consensus 115 ~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~a 194 (643)
++.++|++|++.+++.+|+.||+.+..........++..+.++++++.+++.+..... .+..++.||||||||++||++
T Consensus 84 ~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LS~G~~qrv~lara 162 (252)
T PRK14272 84 RRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDR-LKTPATGLSGGQQQRLCIARA 162 (252)
T ss_pred hceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhh-hcCCcccCCHHHHHHHHHHHH
Confidence 6779999999999999999999987654321112334456677788888764211111 145678999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 195 VIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 195 L~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+++|++++|++|++++.|+++++.
T Consensus 163 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14272 163 LAVEPEILLMDEPTSALDPASTARIEDLMTDLKK--VTTIIIVTHNMH-QAARVSDTTSFFLVGDLVEHGPTDQLF 235 (252)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999999999999863 699999999997 588899999999999999999988764
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-43 Score=361.33 Aligned_cols=223 Identities=22% Similarity=0.374 Sum_probs=191.5
Q ss_pred hhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCC-----ccEEEECCCcCCc-----hhh
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQ-----SGSTFVNGSPIDK-----AQF 114 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~-----~G~I~~~g~~~~~-----~~~ 114 (643)
+++++|++++|+.+.+|+|+||++++||+++|+||||||||||+++|+|+.+|+ +|+|.++|+++.. ..+
T Consensus 7 ~l~~~nl~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~ 86 (261)
T PRK14258 7 AIKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRL 86 (261)
T ss_pred eEEEeeEEEEeCCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHh
Confidence 467899999998888999999999999999999999999999999999999985 8999999987631 245
Q ss_pred cccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHH
Q 006505 115 RKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFD 194 (643)
Q Consensus 115 ~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~a 194 (643)
++.++|++|++.+++ +|++||+.+........+..+..+++.++++.+++.+..+.. .++.+..||||||||++||++
T Consensus 87 ~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LSgGq~qrv~lara 164 (261)
T PRK14258 87 RRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHK-IHKSALDLSGGQQQRLCIARA 164 (261)
T ss_pred hccEEEEecCCccCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhH-hcCCcccCCHHHHHHHHHHHH
Confidence 677999999988888 899999988654321113334456788999999985422211 155778999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeC-----CeEEEecChhHH
Q 006505 195 VIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLAN-----GSVLHHGTVDLL 269 (643)
Q Consensus 195 L~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~-----G~iv~~G~~~~~ 269 (643)
|+.+|++++|||||+|||+.++..+.+.|++++++.|+|||++|||++ ++.+++|++++|++ |++++.|+++++
T Consensus 165 l~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~ 243 (261)
T PRK14258 165 LAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH-QVSRLSDFTAFFKGNENRIGQLVEFGLTKKI 243 (261)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhcCEEEEEccCCCcCceEEEeCCHHHH
Confidence 999999999999999999999999999999987655899999999997 58899999999999 999999999887
Q ss_pred H
Q 006505 270 S 270 (643)
Q Consensus 270 ~ 270 (643)
.
T Consensus 244 ~ 244 (261)
T PRK14258 244 F 244 (261)
T ss_pred H
Confidence 4
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-43 Score=363.84 Aligned_cols=225 Identities=24% Similarity=0.424 Sum_probs=193.3
Q ss_pred hhhhhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCC-----CccEEEECCCcCCc----
Q 006505 41 AQEELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTP-----QSGSTFVNGSPIDK---- 111 (643)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~-----~~G~I~~~g~~~~~---- 111 (643)
.+.+++.+++++++|+.+++|+|+|+++++||+++|+||||||||||+++|+|+.+| ++|+|.++|+++..
T Consensus 17 ~~~~~l~i~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~ 96 (276)
T PRK14271 17 AAAPAMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDV 96 (276)
T ss_pred ccCcEEEEeeEEEEECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchh
Confidence 345678999999999999999999999999999999999999999999999999985 69999999988742
Q ss_pred hhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHH
Q 006505 112 AQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSI 191 (643)
Q Consensus 112 ~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~i 191 (643)
..+++.++|++|++.+++ .|++||+.+........+.++.++++.++++.+++.+..++.. ++.+..||||||||++|
T Consensus 97 ~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l-~~~~~~LSgGq~qrl~L 174 (276)
T PRK14271 97 LEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRL-SDSPFRLSGGQQQLLCL 174 (276)
T ss_pred HHHhhheEEeccCCccCC-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHh-hCCcccCCHHHHHHHHH
Confidence 245678999999998888 7999999876533211234455566788999999875332211 45678999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 192 GFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 192 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+++|++++|++|+++..|+++++.
T Consensus 175 Aral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tiiivsH~~~-~~~~~~dri~~l~~G~i~~~g~~~~~~ 250 (276)
T PRK14271 175 ARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD--RLTVIIVTHNLA-QAARISDRAALFFDGRLVEEGPTEQLF 250 (276)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999999999999999975 489999999997 588999999999999999999988764
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-43 Score=356.15 Aligned_cols=200 Identities=31% Similarity=0.461 Sum_probs=174.5
Q ss_pred eeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEccCCCCCCCCCHHHHHHHH
Q 006505 61 LDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTVEETLMFS 140 (643)
Q Consensus 61 L~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~ 140 (643)
|+|+|+++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++.... ...+|++|++.+++.+||+||+.+.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~v~q~~~l~~~~tv~e~l~~~ 78 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPG--PDRMVVFQNYSLLPWLTVRENIALA 78 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCC--hhheEEecCcccCCCCCHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999875322 2248999999999999999999886
Q ss_pred HHhcC-CCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH
Q 006505 141 AKLRL-RLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQI 219 (643)
Q Consensus 141 ~~~~~-~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i 219 (643)
..... ...+++.++++.++++.+|+++..+ +.+.+||||||||++||++|+.+|++|+|||||+|||+.++..+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l 153 (230)
T TIGR01184 79 VDRVLPDLSKSERRAIVEEHIALVGLTEAAD-----KRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNL 153 (230)
T ss_pred HHhcccCCCHHHHHHHHHHHHHHcCCHHHHc-----CChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHH
Confidence 42111 2234455667899999999987664 46789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhH
Q 006505 220 IDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDL 268 (643)
Q Consensus 220 ~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 268 (643)
.+.|++++++.|+|||++||+++ ++.+++|++++|++|+++..|++.+
T Consensus 154 ~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~ 201 (230)
T TIGR01184 154 QEELMQIWEEHRVTVLMVTHDVD-EALLLSDRVVMLTNGPAANIGQILE 201 (230)
T ss_pred HHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCCcEecccCcee
Confidence 99999998766899999999997 5889999999999999998886543
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-43 Score=359.01 Aligned_cols=219 Identities=22% Similarity=0.389 Sum_probs=186.9
Q ss_pred hhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCC-----CccEEEECCCcCC----chhhcc
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTP-----QSGSTFVNGSPID----KAQFRK 116 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~-----~~G~I~~~g~~~~----~~~~~~ 116 (643)
+++++++++|+++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| ++|+|.++|.++. ....++
T Consensus 4 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~ 83 (249)
T PRK14253 4 FNIENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRI 83 (249)
T ss_pred EEEeccEEEECCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHh
Confidence 5678999999888999999999999999999999999999999999999886 5999999998763 134567
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHh
Q 006505 117 VSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVI 196 (643)
Q Consensus 117 ~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~ 196 (643)
.++|++|++.+++ .||.||+.+.........++..++++.+.++.+++.+...... +..+.+|||||||||+||++|+
T Consensus 84 ~i~~~~q~~~~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~LS~G~~qrv~laral~ 161 (249)
T PRK14253 84 KVGMVFQKPNPFP-MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRL-KSHAFGLSGGQQQRLCIARTIA 161 (249)
T ss_pred heeEEecCCCcCc-ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHh-hcCcccCCHHHHHHHHHHHHHH
Confidence 8999999999888 7999999886543211123344567888899988754221111 4567899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHH
Q 006505 197 HDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLL 269 (643)
Q Consensus 197 ~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 269 (643)
.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+++|++++|++|+++..|+++++
T Consensus 162 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (249)
T PRK14253 162 MEPDVILMDEPTSALDPIATHKIEELMEELKK--NYTIVIVTHSMQ-QARRISDRTAFFLMGELVEHDDTQVI 231 (249)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999975 589999999997 58899999999999999999998765
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-43 Score=358.37 Aligned_cols=221 Identities=23% Similarity=0.338 Sum_probs=188.3
Q ss_pred hhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCC-----ccEEEECCCcCCc-----hhh
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQ-----SGSTFVNGSPIDK-----AQF 114 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~-----~G~I~~~g~~~~~-----~~~ 114 (643)
++.+++++++|+++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|+ +|+|.++|+++.. ..+
T Consensus 4 ~l~~~~l~~~~~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~ 83 (251)
T PRK14249 4 KIKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNL 83 (251)
T ss_pred eEEEEEEEEEECCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHh
Confidence 466889999998888999999999999999999999999999999999999987 6999999987632 245
Q ss_pred cccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHH
Q 006505 115 RKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFD 194 (643)
Q Consensus 115 ~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~a 194 (643)
++.++|++|++.+++. |++||+.+....+....+++.++.++++++.+++.+..... .++.+..||||||||++||++
T Consensus 84 ~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LS~Gq~qrv~lara 161 (251)
T PRK14249 84 RKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDN-LHKSGLALSGGQQQRLCIARV 161 (251)
T ss_pred hceEEEEecCCccCcC-cHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhH-hhCCcccCCHHHHHHHHHHHH
Confidence 7789999999998885 99999998764332112233445677888888875422111 256788999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 195 VIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 195 L~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
|+.+|++++|||||+|||+.++..+.+.|++++ + ++|||++||+++ .+.+++|++++|++|++++.|+++++.
T Consensus 162 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tilivsh~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14249 162 LAIEPEVILMDEPCSALDPVSTMRIEELMQELK-Q-NYTIAIVTHNMQ-QAARASDWTGFLLTGDLVEYGRTGEIF 234 (251)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHH-HHHhhCCEEEEEeCCeEEEeCCHHHHH
Confidence 999999999999999999999999999999984 3 899999999997 588899999999999999999988764
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-43 Score=358.85 Aligned_cols=219 Identities=22% Similarity=0.352 Sum_probs=186.0
Q ss_pred hcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCC-----CCccEEEECCCcCCc-----hhhcc
Q 006505 47 KLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLT-----PQSGSTFVNGSPIDK-----AQFRK 116 (643)
Q Consensus 47 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~-----~~~G~I~~~g~~~~~-----~~~~~ 116 (643)
++++++++|+++++|+|+||++++||+++|+||||||||||+++|+|+.+ |++|+|.++|+++.. ...++
T Consensus 7 ~~~~l~~~~~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~ 86 (251)
T PRK14244 7 SVKNLNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRA 86 (251)
T ss_pred EeeeEEEEECCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhh
Confidence 46788888988899999999999999999999999999999999999986 469999999987632 23567
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHH
Q 006505 117 VSGYVTQRDTLFPLLTVEETLMFSAKLRLR-LPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDV 195 (643)
Q Consensus 117 ~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~-~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL 195 (643)
.++|++|++.+++. |++||+.+....+.. ...++.++.+.++++.+|+.+...+.. +..+.+||||||||++||++|
T Consensus 87 ~i~~v~q~~~~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~Gq~qrv~laral 164 (251)
T PRK14244 87 KVGMVFQKPNPFPK-SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRL-KDSAFELSGGQQQRLCIARAI 164 (251)
T ss_pred hEEEEecCcccccC-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHh-hcChhhCCHHHHHHHHHHHHH
Confidence 89999999988886 999999886443311 123344567889999999965321111 446789999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 196 IHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 196 ~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
+.+|++|+|||||+|||+.++..+.+.|++++ + |+|||++||+++ ++.+++|++++|++|++++.|+++++.
T Consensus 165 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiiiisH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (251)
T PRK14244 165 AVKPTMLLMDEPCSALDPVATNVIENLIQELK-K-NFTIIVVTHSMK-QAKKVSDRVAFFQSGRIVEYNTTQEIF 236 (251)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHH-HHHhhcCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999985 3 899999999997 578899999999999999999987663
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-43 Score=358.90 Aligned_cols=220 Identities=28% Similarity=0.420 Sum_probs=186.6
Q ss_pred hhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCc-----CCc---hh---
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSP-----IDK---AQ--- 113 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~-----~~~---~~--- 113 (643)
++++++++++|+++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|++ +.. ..
T Consensus 3 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 82 (253)
T TIGR02323 3 LLQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRR 82 (253)
T ss_pred eEEEeeeEEEeCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHH
Confidence 4678999999988889999999999999999999999999999999999999999999999976 432 11
Q ss_pred -hcccEEEEccCCC--CCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChh-hhhhhcCCCcCCCCCHHHHHHH
Q 006505 114 -FRKVSGYVTQRDT--LFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEH-VAMARVGDDRVRGISGGERRRV 189 (643)
Q Consensus 114 -~~~~i~yv~Q~~~--l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~-~~~~~vg~~~~~~LSGGerqRv 189 (643)
.++.++|++|++. +++.+|+.||+.+...........+..+++.++++.+|+.+ .. +..++.|||||||||
T Consensus 83 ~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~-----~~~~~~LSgG~~qrv 157 (253)
T TIGR02323 83 LMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRI-----DDLPRAFSGGMQQRL 157 (253)
T ss_pred hhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhh-----hcCchhcCHHHHHHH
Confidence 2356999999974 45667999999764321111112234567889999999963 44 446789999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHH
Q 006505 190 SIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLL 269 (643)
Q Consensus 190 ~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 269 (643)
+||+||+.+|++|+|||||+|||+.++..+.+.|++++++.|.|||++||+++ .+.+++|++++|++|++++.|+++++
T Consensus 158 ~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~-~~~~~~d~~~~l~~G~i~~~~~~~~~ 236 (253)
T TIGR02323 158 QIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLG-VARLLAQRLLVMQQGRVVESGLTDQV 236 (253)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999999987656899999999997 57789999999999999999998766
Q ss_pred H
Q 006505 270 S 270 (643)
Q Consensus 270 ~ 270 (643)
.
T Consensus 237 ~ 237 (253)
T TIGR02323 237 L 237 (253)
T ss_pred h
Confidence 4
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-43 Score=362.17 Aligned_cols=224 Identities=25% Similarity=0.380 Sum_probs=190.8
Q ss_pred hhhhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCC-----CccEEEECCCcCCc-----
Q 006505 42 QEELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTP-----QSGSTFVNGSPIDK----- 111 (643)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~-----~~G~I~~~g~~~~~----- 111 (643)
+.++++++|++++|+++.+|+|+||++++||+++|+||||||||||+++|+|+.+| ++|+|.++|+++..
T Consensus 22 ~~~~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~ 101 (272)
T PRK14236 22 EQTALEVRNLNLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDV 101 (272)
T ss_pred CCcEEEEEEEEEEECCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCH
Confidence 34567899999999888999999999999999999999999999999999999874 79999999988742
Q ss_pred hhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHH
Q 006505 112 AQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSI 191 (643)
Q Consensus 112 ~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~i 191 (643)
..+++.++|++|++.+++. |++||+.+.........++..+++++++++.+++.+...+. .++.+.+||||||||++|
T Consensus 102 ~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LS~Gq~qrv~l 179 (272)
T PRK14236 102 AELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDR-LHENAFGLSGGQQQRLVI 179 (272)
T ss_pred HHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHH-hhCCcccCCHHHHHHHHH
Confidence 2456789999999988886 99999988754331112333456788899999986421111 145678999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 192 GFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 192 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
|++|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||+++ ++.+++|++++|++|+++..|+++++.
T Consensus 180 aral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~~tiiivtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 255 (272)
T PRK14236 180 ARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS--KYTIVIVTHNMQ-QAARVSDYTAFMYMGKLVEYGDTDTLF 255 (272)
T ss_pred HHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCeEEEEeCCHH-HHHhhCCEEEEEECCEEEecCCHHHHh
Confidence 9999999999999999999999999999999999974 689999999997 478899999999999999999987763
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-43 Score=358.03 Aligned_cols=221 Identities=27% Similarity=0.388 Sum_probs=187.2
Q ss_pred hhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCC-----CCccEEEECCCcCCc-----hhh
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLT-----PQSGSTFVNGSPIDK-----AQF 114 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~-----~~~G~I~~~g~~~~~-----~~~ 114 (643)
++++++++++|+.+++|+|+|+++++||+++|+||||||||||+|+|+|+.+ |++|+|.++|+++.. ...
T Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~ 83 (251)
T PRK14251 4 IISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVEL 83 (251)
T ss_pred eEEEEeeEEEECCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHh
Confidence 4678999999988899999999999999999999999999999999999987 479999999988632 235
Q ss_pred cccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHH
Q 006505 115 RKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFD 194 (643)
Q Consensus 115 ~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~a 194 (643)
++.++|++|++.+++ .||+||+.+..........+..+++++++++.+++...... ..+..+.+||||||||++||+|
T Consensus 84 ~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~LS~Gq~qr~~lara 161 (251)
T PRK14251 84 RKEVGMVFQQPTPFP-FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKD-NLDRNAQAFSGGQQQRICIARA 161 (251)
T ss_pred hccEEEEecCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHH-HhccChhhCCHHHHHHHHHHHH
Confidence 677999999998887 69999998765432111233345678889999998421111 1145678999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 195 VIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 195 L~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
|+.+|+++||||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+++|++++|++|+++..|+++++.
T Consensus 162 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiiiisH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14251 162 LAVRPKVVLLDEPTSALDPISSSEIEETLMELKH--QYTFIMVTHNLQ-QAGRISDQTAFLMNGDLIEAGPTEEMF 234 (251)
T ss_pred HhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc--CCeEEEEECCHH-HHHhhcCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999999999999853 689999999997 488899999999999999999988763
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-43 Score=352.26 Aligned_cols=208 Identities=28% Similarity=0.520 Sum_probs=181.9
Q ss_pred hhcccccccccc----cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc------hhhc
Q 006505 46 SKLEEAADSDGV----RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK------AQFR 115 (643)
Q Consensus 46 ~~~~~~~~~~~~----~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~------~~~~ 115 (643)
++++++++.|+. +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ...+
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 346778777764 679999999999999999999999999999999999999999999999998742 1356
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHH
Q 006505 116 KVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDV 195 (643)
Q Consensus 116 ~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL 195 (643)
+.++|++|++.+++.+|+.||+.+..........++..++++++++.+|+.+..++ .++.||||||||++||++|
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~lS~G~~qrv~laral 156 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDY-----YPHNLSGGQKQRVAIARAL 156 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhc-----ChhhCCHHHHHHHHHHHHH
Confidence 78999999999999899999999876543222345556678999999999876644 6689999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeE
Q 006505 196 IHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSV 260 (643)
Q Consensus 196 ~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 260 (643)
+.+|++++|||||+|||+.++..+.+.|++++++.|+|||++||+++ +.+++|++++|++|++
T Consensus 157 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 157 VHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHMEDGKL 219 (220)
T ss_pred hcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEEECCEE
Confidence 99999999999999999999999999999998756899999999985 4589999999999986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-43 Score=362.92 Aligned_cols=221 Identities=21% Similarity=0.380 Sum_probs=188.0
Q ss_pred hhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCC-----CCccEEEECCCcCC-----chh
Q 006505 44 ELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLT-----PQSGSTFVNGSPID-----KAQ 113 (643)
Q Consensus 44 ~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~-----~~~G~I~~~g~~~~-----~~~ 113 (643)
.++++++++++|+.+.+|+|+||++++||+++|+||||||||||+++|+|+.+ |++|+|.++|+++. ...
T Consensus 12 ~~l~i~nl~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~ 91 (269)
T PRK14259 12 IIISLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVE 91 (269)
T ss_pred ceEEEEeEEEEECCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHH
Confidence 45789999999998899999999999999999999999999999999999987 58999999998763 234
Q ss_pred hcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHH
Q 006505 114 FRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGF 193 (643)
Q Consensus 114 ~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~ 193 (643)
+++.++|++|++.+++. ||+||+.+.+..+. .. ++.++++.++++.+++....... .++.+.+||||||||++||+
T Consensus 92 ~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~-~~-~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LS~G~~qrl~lar 167 (269)
T PRK14259 92 VRRRIGMVFQQPNPFPK-SIYENIAFGARING-YT-GDMDELVERSLRKAAVWDECKDK-LNESGYSLSGGQQQRLCIAR 167 (269)
T ss_pred HhhceEEEccCCccchh-hHHHHHhhhhhhcC-Cc-HHHHHHHHHHHHHhCCcchhhhh-hCCCcccCCHHHHHHHHHHH
Confidence 56789999999988885 99999998765431 12 23345678889998874211111 15577899999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeC-----------CeEEE
Q 006505 194 DVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLAN-----------GSVLH 262 (643)
Q Consensus 194 aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~-----------G~iv~ 262 (643)
||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.++||++++|++ |++++
T Consensus 168 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~--~~tiiivtH~~~-~~~~~~d~i~~l~~~~~~~~~~g~~g~~~~ 244 (269)
T PRK14259 168 TIAIEPEVILMDEPCSALDPISTLKIEETMHELKK--NFTIVIVTHNMQ-QAVRVSDMTAFFNAEEVEGGSGGKVGYLVE 244 (269)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHH-HHHHhcCEEEEEeccccccccccccceEEE
Confidence 99999999999999999999999999999999953 689999999997 58899999999996 67899
Q ss_pred ecChhHHHH
Q 006505 263 HGTVDLLSV 271 (643)
Q Consensus 263 ~G~~~~~~~ 271 (643)
.|+++++.+
T Consensus 245 ~~~~~~~~~ 253 (269)
T PRK14259 245 FNETKKIFN 253 (269)
T ss_pred eCCHHHHHh
Confidence 999988753
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-43 Score=361.41 Aligned_cols=220 Identities=28% Similarity=0.419 Sum_probs=189.6
Q ss_pred hhhccccccccc---------ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc----
Q 006505 45 LSKLEEAADSDG---------VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---- 111 (643)
Q Consensus 45 ~~~~~~~~~~~~---------~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---- 111 (643)
+++++|++++|+ ++.+++|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++..
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 456888888886 4789999999999999999999999999999999999999999999999987642
Q ss_pred --hhhcccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCh-hhhhhhcCCCcCCCCCHHHH
Q 006505 112 --AQFRKVSGYVTQRD--TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLE-HVAMARVGDDRVRGISGGER 186 (643)
Q Consensus 112 --~~~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~-~~~~~~vg~~~~~~LSGGer 186 (643)
...++.++|++|++ .+++..|+.|++.+..........++..++++++++.+|+. +.. +..++.||||||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----~~~~~~LS~Ge~ 157 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVL-----DKRPPQLSGGQL 157 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHh-----hCCCccCChHHH
Confidence 13467899999997 46778899999976543211223444556789999999996 444 446789999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecCh
Q 006505 187 RRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTV 266 (643)
Q Consensus 187 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 266 (643)
||++||++|+.+|++|||||||+|||+.++..+.+.|++++++.|.|||++||+++ .+.+++|++++|++|++++.|++
T Consensus 158 qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~G~i~~~g~~ 236 (268)
T PRK10419 158 QRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR-LVERFCQRVMVMDNGQIVETQPV 236 (268)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HHHHhCCEEEEEECCEEeeeCCh
Confidence 99999999999999999999999999999999999999998766899999999997 57889999999999999999998
Q ss_pred hHHH
Q 006505 267 DLLS 270 (643)
Q Consensus 267 ~~~~ 270 (643)
+++.
T Consensus 237 ~~~~ 240 (268)
T PRK10419 237 GDKL 240 (268)
T ss_pred hhcc
Confidence 7754
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-43 Score=332.43 Aligned_cols=218 Identities=29% Similarity=0.463 Sum_probs=196.8
Q ss_pred hhcccccccccccc--eeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEcc
Q 006505 46 SKLEEAADSDGVRR--VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQ 123 (643)
Q Consensus 46 ~~~~~~~~~~~~~~--iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q 123 (643)
+.+++++.+|+.+. +|+|+|++|.+||.++++||||||||||||+++|+.+|..|+|.+||++++... ..-|.|+|
T Consensus 4 l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPg--aergvVFQ 81 (259)
T COG4525 4 LNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPG--AERGVVFQ 81 (259)
T ss_pred eehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCC--ccceeEec
Confidence 45678888888887 999999999999999999999999999999999999999999999999986432 23589999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEE
Q 006505 124 RDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLI 203 (643)
Q Consensus 124 ~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~ill 203 (643)
++.++|.+||.+|+.|+.+++ +.++.++.+++.+.+..+||++..+ +++-+|||||||||.|||||+.+|++|+
T Consensus 82 ~~~LlPWl~~~dNvafgL~l~-Gi~k~~R~~~a~q~l~~VgL~~~~~-----~~i~qLSGGmrQRvGiARALa~eP~~Ll 155 (259)
T COG4525 82 NEALLPWLNVIDNVAFGLQLR-GIEKAQRREIAHQMLALVGLEGAEH-----KYIWQLSGGMRQRVGIARALAVEPQLLL 155 (259)
T ss_pred cCccchhhHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhCcccccc-----cceEeecchHHHHHHHHHHhhcCcceEe
Confidence 999999999999999999887 5678888999999999999998764 4678999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeC--CeEEEecChhHHHHH
Q 006505 204 LDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLAN--GSVLHHGTVDLLSVS 272 (643)
Q Consensus 204 lDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~--G~iv~~G~~~~~~~~ 272 (643)
||||+++||.-++.++.++|-++.++.|+.++++||+.+ |..-+++++++|+. |+++..-+++=...|
T Consensus 156 LDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ie-EAlflatrLvvlsp~pgRvv~~~~~df~rR~ 225 (259)
T COG4525 156 LDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIE-EALFLATRLVVLSPGPGRVVERLPLDFARRY 225 (259)
T ss_pred ecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHhhhheeEEecCCCceeeEecCCCHHHHh
Confidence 999999999999999999999999999999999999998 57778999999984 899988777633333
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-43 Score=358.09 Aligned_cols=222 Identities=23% Similarity=0.357 Sum_probs=188.6
Q ss_pred hhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCC--C---CccEEEECCCcCCc-----hh
Q 006505 44 ELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLT--P---QSGSTFVNGSPIDK-----AQ 113 (643)
Q Consensus 44 ~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~--~---~~G~I~~~g~~~~~-----~~ 113 (643)
+++++++++++|+++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+ | ++|+|.++|+++.. ..
T Consensus 5 ~~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 84 (253)
T PRK14261 5 IILSTKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVA 84 (253)
T ss_pred ceEEEeeeEEEECCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhh
Confidence 35778999999998899999999999999999999999999999999999875 3 48999999988742 23
Q ss_pred hcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHH
Q 006505 114 FRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGF 193 (643)
Q Consensus 114 ~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~ 193 (643)
.++.++|++|++.+++. ||+||+.+....+......+.++.+.++++.+++.+...+. .++.+..||||||||++||+
T Consensus 85 ~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LS~G~~qrv~lar 162 (253)
T PRK14261 85 LRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDR-LHDSALSLSGGQQQRLCIAR 162 (253)
T ss_pred hhceEEEEecCCccCcc-cHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHH-hhcChhhCCHHHHHHHHHHH
Confidence 46779999999988885 99999998765432122334456788899998885321111 15577899999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 194 DVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 194 aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+++|++++|++|+++..|+++++.
T Consensus 163 al~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~--~~tvii~sh~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14261 163 TLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK--EYTVIIVTHNMQ-QAARVSDYTGFMYLGKLIEFDKTTQIF 236 (253)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh--CceEEEEEcCHH-HHHhhCCEEEEEECCEEEEcCCHHHHH
Confidence 99999999999999999999999999999999974 589999999997 477899999999999999999988764
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-43 Score=337.71 Aligned_cols=218 Identities=30% Similarity=0.486 Sum_probs=191.4
Q ss_pred hhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEEEE
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGYV 121 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~yv 121 (643)
+++.+|++.+..+|.+|++||++++|||++||+||||||||||||.|+|...|++|++.+||.+++. .+..++-+.+
T Consensus 1 mi~a~nls~~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVl 80 (259)
T COG4559 1 MIRAENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVL 80 (259)
T ss_pred CeeeeeeEEEeecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhc
Confidence 3567899999999999999999999999999999999999999999999999999999999998854 4556677999
Q ss_pred ccCCCC-CCCCCHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhc--
Q 006505 122 TQRDTL-FPLLTVEETLMFSAKLRL-RLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIH-- 197 (643)
Q Consensus 122 ~Q~~~l-~~~lTv~E~l~~~~~~~~-~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~-- 197 (643)
||+..+ || .||.|-+.++..-.. +....+..+.+++.|...++.+.+. +....|||||||||.+||.|++
T Consensus 81 pQ~s~laFp-Ftv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~-----R~y~~LSGGEqQRVqlARvLaQl~ 154 (259)
T COG4559 81 PQNSSLAFP-FTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAG-----RDYRTLSGGEQQRVQLARVLAQLW 154 (259)
T ss_pred ccCcccccc-eEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhc-----cchhhcCchHHHHHHHHHHHHHcc
Confidence 999877 55 599999999864332 1222345566889999999998874 4567999999999999999986
Q ss_pred ----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 198 ----DPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 198 ----~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
+++.||||||||.||...+..++++.++++++ |..|+++.||++. ...+||||++|++||++..|+|+++.
T Consensus 155 ~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~-g~~V~~VLHDLNL-AA~YaDrivll~~Grv~a~g~p~~vl 229 (259)
T COG4559 155 PPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLARE-GGAVLAVLHDLNL-AAQYADRIVLLHQGRVIASGSPQDVL 229 (259)
T ss_pred CCCCCCceEEecCCccccchHHHHHHHHHHHHHHhc-CCcEEEEEccchH-HHHhhheeeeeeCCeEeecCCHHHhc
Confidence 45689999999999999999999999999986 8999999999996 78999999999999999999999875
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-43 Score=347.10 Aligned_cols=199 Identities=29% Similarity=0.499 Sum_probs=174.5
Q ss_pred cccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCC---c----hhhcccEEE
Q 006505 48 LEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPID---K----AQFRKVSGY 120 (643)
Q Consensus 48 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~---~----~~~~~~i~y 120 (643)
++|+++.|+++++|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+++. . ...++.++|
T Consensus 1 i~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~ 80 (206)
T TIGR03608 1 LKNISKKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGY 80 (206)
T ss_pred CcceEEEECCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeE
Confidence 467888888889999999999999999999999999999999999999999999999999853 1 124578999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCC
Q 006505 121 VTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPK 200 (643)
Q Consensus 121 v~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~ 200 (643)
++|++.+++.+|++||+.+..... ...+++..++++++++.+|+++..+ +.+.+||||||||++||+||+.+|+
T Consensus 81 ~~q~~~~~~~~t~~e~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~lS~G~~qr~~laral~~~p~ 154 (206)
T TIGR03608 81 LFQNFALIENETVEENLDLGLKYK-KLSKKEKREKKKEALEKVGLNLKLK-----QKIYELSGGEQQRVALARAILKDPP 154 (206)
T ss_pred EecchhhccCCcHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCchhhhc-----CChhhCCHHHHHHHHHHHHHHcCCC
Confidence 999999999999999999875432 2234455677899999999987664 4667999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEE
Q 006505 201 VLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILML 255 (643)
Q Consensus 201 illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L 255 (643)
+++|||||+|||+.++..+.+.|++++++ |.|||++||+++ ..+.+|++++|
T Consensus 155 llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~~sh~~~--~~~~~d~i~~l 206 (206)
T TIGR03608 155 LILADEPTGSLDPKNRDEVLDLLLELNDE-GKTIIIVTHDPE--VAKQADRVIEL 206 (206)
T ss_pred EEEEeCCcCCCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHH--HHhhcCEEEeC
Confidence 99999999999999999999999999875 899999999986 34789999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-43 Score=352.61 Aligned_cols=207 Identities=25% Similarity=0.416 Sum_probs=177.4
Q ss_pred eeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCC----CccEEEECCCcCCchhh-cccEEEEccCCC--CCCCCC
Q 006505 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTP----QSGSTFVNGSPIDKAQF-RKVSGYVTQRDT--LFPLLT 132 (643)
Q Consensus 60 iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~----~~G~I~~~g~~~~~~~~-~~~i~yv~Q~~~--l~~~lT 132 (643)
+|+|+|+++++||+++|+||||||||||+|+|+|+.+| ++|+|.++|+++..... ++.++|++|++. +++.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 57999999999999999999999999999999999999 89999999998754333 357999999974 567789
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Q 006505 133 VEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLD 212 (643)
Q Consensus 133 v~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD 212 (643)
+.|++.+..... ....++.++++.++++.+++.+.. ...++.+..|||||||||+||++|+.+|++++|||||+|||
T Consensus 81 ~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD 157 (230)
T TIGR02770 81 MGNHAIETLRSL-GKLSKQARALILEALEAVGLPDPE--EVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLD 157 (230)
T ss_pred HHHHHHHHHHHc-CccHHHHHHHHHHHHHHcCCCchH--HHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccC
Confidence 999998765432 122344456789999999997320 11145678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 213 STSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 213 ~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|+++..|+++++.
T Consensus 158 ~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 158 VVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVAVMDDGRIVERGTVKEIF 214 (230)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999998755899999999997 588899999999999999999988764
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=356.82 Aligned_cols=226 Identities=23% Similarity=0.409 Sum_probs=192.0
Q ss_pred hhhhhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECC------CcCC---c
Q 006505 41 AQEELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNG------SPID---K 111 (643)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g------~~~~---~ 111 (643)
...+++.+++++++|+++.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| +++. .
T Consensus 6 ~~~~~i~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~ 85 (257)
T PRK14246 6 SAEDVFNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDA 85 (257)
T ss_pred hhhhheeeeeEEEecCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCH
Confidence 355778999999999999999999999999999999999999999999999999999986666555 5442 2
Q ss_pred hhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHH
Q 006505 112 AQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSI 191 (643)
Q Consensus 112 ~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~i 191 (643)
...++.++|++|++.+++.+|++||+.+.........+++.++++.++++.+++.+...... +..+..||||||||++|
T Consensus 86 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~LS~G~~qrl~l 164 (257)
T PRK14246 86 IKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRL-NSPASQLSGGQQQRLTI 164 (257)
T ss_pred HHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhh-cCCcccCCHHHHHHHHH
Confidence 34567899999999999999999999987543222234455677899999999964211111 44678999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 192 GFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 192 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
|++|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||+++ .+.+++|++++|++|+++..|++++..
T Consensus 165 aral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiilvsh~~~-~~~~~~d~v~~l~~g~i~~~g~~~~~~ 240 (257)
T PRK14246 165 ARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN--EIAIVIVSHNPQ-QVARVADYVAFLYNGELVEWGSSNEIF 240 (257)
T ss_pred HHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CcEEEEEECCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999999964 699999999997 477899999999999999999988764
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=356.30 Aligned_cols=222 Identities=27% Similarity=0.391 Sum_probs=186.5
Q ss_pred hhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCC--C---CccEEEECCCcCCc-----hh
Q 006505 44 ELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLT--P---QSGSTFVNGSPIDK-----AQ 113 (643)
Q Consensus 44 ~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~--~---~~G~I~~~g~~~~~-----~~ 113 (643)
+++++++++++|+.+.+|+|+|+++++||+++|+||||||||||+++|+|+.+ | ++|+|.++|+++.. ..
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 83 (252)
T PRK14255 4 KIITSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQ 83 (252)
T ss_pred ceEEEEeEEEEECCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHH
Confidence 45778999999998899999999999999999999999999999999999865 4 48999999987732 24
Q ss_pred hcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHH
Q 006505 114 FRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGF 193 (643)
Q Consensus 114 ~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~ 193 (643)
+++.++|++|++.+++ .|++||+.+....+.....+..++++.+.++.+++....... -+..+.+||||||||++||+
T Consensus 84 ~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~-~~~~~~~LS~Gq~qrv~lar 161 (252)
T PRK14255 84 LRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDH-LHESALSLSGGQQQRVCIAR 161 (252)
T ss_pred hcCeEEEEECCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhH-HhcCcccCCHHHHHHHHHHH
Confidence 5678999999998888 699999998754332112233345677788888764211111 14577899999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 194 DVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 194 aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
+|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||+++ ++.+.+|++++|++|+++..|++.+..
T Consensus 162 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~vsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14255 162 VLAVKPDVILLDEPTSALDPISSTQIENMLLELRD--QYTIILVTHSMH-QASRISDKTAFFLTGNLIEFADTKQMF 235 (252)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh--CCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999999965 589999999997 588899999999999999999988764
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-43 Score=395.65 Aligned_cols=219 Identities=22% Similarity=0.362 Sum_probs=193.0
Q ss_pred hhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCC--CccEEEECCCcCCch----hhccc
Q 006505 44 ELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTP--QSGSTFVNGSPIDKA----QFRKV 117 (643)
Q Consensus 44 ~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~--~~G~I~~~g~~~~~~----~~~~~ 117 (643)
++++++|++++|+++.+|+|+||++++||+++|+||||||||||+|+|+|+.+| ++|+|.++|+++... ..++.
T Consensus 4 ~~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 83 (506)
T PRK13549 4 YLLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAG 83 (506)
T ss_pred ceEEEeeeEEEeCCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCC
Confidence 357889999999988999999999999999999999999999999999999986 799999999987431 23567
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHHhcC-C-CCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHH
Q 006505 118 SGYVTQRDTLFPLLTVEETLMFSAKLRL-R-LPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDV 195 (643)
Q Consensus 118 i~yv~Q~~~l~~~lTv~E~l~~~~~~~~-~-~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL 195 (643)
++||+|++.+++.+||+||+.++...+. . .+.++.+++++++++.+|+.+.. ++++++|||||||||+||+||
T Consensus 84 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~LSgGqkqrv~la~al 158 (506)
T PRK13549 84 IAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINP-----ATPVGNLGLGQQQLVEIAKAL 158 (506)
T ss_pred eEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCc-----ccchhhCCHHHHHHHHHHHHH
Confidence 9999999999999999999998754321 1 13344556789999999997666 446789999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHH
Q 006505 196 IHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLL 269 (643)
Q Consensus 196 ~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 269 (643)
+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++|||++ .+.++||++++|++|++++.|+++++
T Consensus 159 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tvi~~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 230 (506)
T PRK13549 159 NKQARLLILDEPTASLTESETAVLLDIIRDLKA-HGIACIYISHKLN-EVKAISDTICVIRDGRHIGTRPAAGM 230 (506)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCcHH-HHHHhcCEEEEEECCEEeeecccccC
Confidence 999999999999999999999999999999976 4999999999997 58889999999999999999998765
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-43 Score=395.25 Aligned_cols=219 Identities=24% Similarity=0.395 Sum_probs=192.8
Q ss_pred hhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---h-hhcccEE
Q 006505 44 ELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---A-QFRKVSG 119 (643)
Q Consensus 44 ~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~-~~~~~i~ 119 (643)
+++++++++++|+++++|+|+||++++||+++|+||||||||||||+|+|+.+|++|+|.++|+++.. . ..++.++
T Consensus 3 ~~i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 82 (501)
T PRK10762 3 ALLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIG 82 (501)
T ss_pred ceEEEeeeEEEeCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEE
Confidence 35778999999998899999999999999999999999999999999999999999999999988742 1 2356799
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcC--C-CCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHh
Q 006505 120 YVTQRDTLFPLLTVEETLMFSAKLRL--R-LPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVI 196 (643)
Q Consensus 120 yv~Q~~~l~~~lTv~E~l~~~~~~~~--~-~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~ 196 (643)
|++|++.+++.+||+||+.++..... . .+.++.+++++++++.+|+.+.. ++++.+|||||||||+||+||+
T Consensus 83 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~LSgG~~qrv~la~al~ 157 (501)
T PRK10762 83 IIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSS-----DKLVGELSIGEQQMVEIAKVLS 157 (501)
T ss_pred EEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCc-----cCchhhCCHHHHHHHHHHHHHh
Confidence 99999999999999999998643221 1 12344556789999999998766 4467899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHH
Q 006505 197 HDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLL 269 (643)
Q Consensus 197 ~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 269 (643)
.+|++|||||||+|||+.++..+.+.|++++++ |+|||++|||++ ++.++||++++|++|+++..|+++++
T Consensus 158 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-~~tvii~sHd~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (501)
T PRK10762 158 FESKVIIMDEPTDALTDTETESLFRVIRELKSQ-GRGIVYISHRLK-EIFEICDDVTVFRDGQFIAEREVADL 228 (501)
T ss_pred cCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEecCcCcC
Confidence 999999999999999999999999999999764 999999999997 58899999999999999999988764
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=362.78 Aligned_cols=224 Identities=23% Similarity=0.362 Sum_probs=188.6
Q ss_pred hhhhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCC-----CCccEEEECCCcCCc-----
Q 006505 42 QEELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLT-----PQSGSTFVNGSPIDK----- 111 (643)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~-----~~~G~I~~~g~~~~~----- 111 (643)
..+++++++++++|+.+.+|+|+|+++++||+++|+||||||||||+++|+|+.+ |++|+|.++|+++..
T Consensus 36 ~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~ 115 (286)
T PRK14275 36 GKPHVVAKNFSIYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDE 115 (286)
T ss_pred CceEEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccch
Confidence 3446789999999988889999999999999999999999999999999999864 489999999987632
Q ss_pred hhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHH
Q 006505 112 AQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSI 191 (643)
Q Consensus 112 ~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~i 191 (643)
..+++.++|++|++.+++. ||.||+.+....+...+.+..++++.++++.+|+.+..... .++.+..||||||||++|
T Consensus 116 ~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LSgGq~qrv~L 193 (286)
T PRK14275 116 VLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDR-LDKNALGLSGGQQQRLCV 193 (286)
T ss_pred HHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhH-hhCChhhCCHHHHHHHHH
Confidence 2356789999999988885 99999998754331112333456788889999874211011 145678999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 192 GFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 192 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
|+||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+++|++++|++|+++..|+++++.
T Consensus 194 AraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~~tvIivsH~~~-~~~~~~d~i~~L~~G~i~~~g~~~~~~ 269 (286)
T PRK14275 194 ARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG--SYTIMIVTHNMQ-QASRVSDYTMFFYEGVLVEHAPTAQLF 269 (286)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999999999999999864 689999999997 578899999999999999999988764
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=358.30 Aligned_cols=221 Identities=24% Similarity=0.405 Sum_probs=188.5
Q ss_pred hhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCC-----CccEEEECCCcCCc-----hhh
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTP-----QSGSTFVNGSPIDK-----AQF 114 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~-----~~G~I~~~g~~~~~-----~~~ 114 (643)
++++++++++|+++.+|+|+|+++++||+++|+|+||||||||+|+|+|+.+| ++|+|.++|+++.. ...
T Consensus 7 ~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 86 (259)
T PRK14260 7 AIKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRL 86 (259)
T ss_pred eEEEEEEEEEECCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhh
Confidence 46789999999888899999999999999999999999999999999999885 48999999987632 245
Q ss_pred cccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHH
Q 006505 115 RKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFD 194 (643)
Q Consensus 115 ~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~a 194 (643)
++.++|++|++.+++ .|++||+.+....+...++.+..++++++++.+|+.+.... ..+..+.+||||||||++||+|
T Consensus 87 ~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-~~~~~~~~LS~G~~qrv~lara 164 (259)
T PRK14260 87 RRQIGMVFQRPNPFP-MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKD-KLNKSALGLSGGQQQRLCIARA 164 (259)
T ss_pred hhheEEEecccccCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhh-HhcCCcccCCHHHHHHHHHHHH
Confidence 678999999998888 79999998875443222334445678889999988432111 1155788999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEe-----CCeEEEecChhHH
Q 006505 195 VIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLA-----NGSVLHHGTVDLL 269 (643)
Q Consensus 195 L~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~-----~G~iv~~G~~~~~ 269 (643)
|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+++|++++|+ +|++++.|+++++
T Consensus 165 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~~-~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~ 241 (259)
T PRK14260 165 LAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS--ELTIAIVTHNMQ-QATRVSDFTAFFSTDESRIGQMVEFGVTTQI 241 (259)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHH-HHHHhcCeEEEEeccCCCCceEEEeCCHHHH
Confidence 9999999999999999999999999999999864 589999999998 5889999999998 5999999999886
Q ss_pred H
Q 006505 270 S 270 (643)
Q Consensus 270 ~ 270 (643)
.
T Consensus 242 ~ 242 (259)
T PRK14260 242 F 242 (259)
T ss_pred h
Confidence 4
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=360.34 Aligned_cols=222 Identities=22% Similarity=0.367 Sum_probs=187.0
Q ss_pred hhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCC-----CCccEEEECCCcCCc-----hh
Q 006505 44 ELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLT-----PQSGSTFVNGSPIDK-----AQ 113 (643)
Q Consensus 44 ~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~-----~~~G~I~~~g~~~~~-----~~ 113 (643)
+++++++++++|+++.+|+|+|+++++||+++|+|+||||||||+++|+|+.+ |++|+|.++|+++.. ..
T Consensus 23 ~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 102 (271)
T PRK14238 23 VVFDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEE 102 (271)
T ss_pred eEEEEeeeEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHH
Confidence 36789999999988899999999999999999999999999999999999987 689999999988732 24
Q ss_pred hcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHH
Q 006505 114 FRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGF 193 (643)
Q Consensus 114 ~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~ 193 (643)
+++.++|++|++.+++. ||+||+.++...+....++..++.+.+.++.+++.+...... +..+.+||||||||++||+
T Consensus 103 ~~~~i~~v~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~-~~~~~~LSgGe~qrv~lar 180 (271)
T PRK14238 103 LRTNVGMVFQKPNPFPK-SIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRL-HDNAYGLSGGQQQRLCIAR 180 (271)
T ss_pred HhhhEEEEecCCccccc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHH-hcCcccCCHHHHHHHHHHH
Confidence 56789999999988875 999999987543211123333456778888876532111111 4577899999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 194 DVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 194 aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+++|++++|++|++++.|+++++.
T Consensus 181 aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivsH~~~-~i~~~~d~i~~l~~G~i~~~g~~~~~~ 254 (271)
T PRK14238 181 CLAIEPDVILMDEPTSALDPISTLKVEELVQELKK--DYSIIIVTHNMQ-QAARISDKTAFFLNGYVNEYDDTDKIF 254 (271)
T ss_pred HHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc--CCEEEEEEcCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999964 699999999997 478899999999999999999987763
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=356.26 Aligned_cols=219 Identities=24% Similarity=0.389 Sum_probs=186.1
Q ss_pred hhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCC----CccEEEECCCcCCchhh-cccEE
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTP----QSGSTFVNGSPIDKAQF-RKVSG 119 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~----~~G~I~~~g~~~~~~~~-~~~i~ 119 (643)
.++++|++++| ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| ++|+|.++|+++..... ++.++
T Consensus 4 ~l~~~~l~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~ 82 (254)
T PRK10418 4 QIELRNIALQA-AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIA 82 (254)
T ss_pred EEEEeCeEEEe-ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEE
Confidence 35688999998 56899999999999999999999999999999999999999 89999999998754333 35799
Q ss_pred EEccCCC--CCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhc
Q 006505 120 YVTQRDT--LFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIH 197 (643)
Q Consensus 120 yv~Q~~~--l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~ 197 (643)
|++|++. +.+.+|+.+++.+.+... .... .++++.++++.+++.+..+ ..++.+..||||||||++||+||+.
T Consensus 83 ~v~q~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~l~~~~l~~~~~--~~~~~~~~LS~Gq~qrv~laral~~ 157 (254)
T PRK10418 83 TIMQNPRSAFNPLHTMHTHARETCLAL-GKPA--DDATLTAALEAVGLENAAR--VLKLYPFEMSGGMLQRMMIALALLC 157 (254)
T ss_pred EEecCCccccCccccHHHHHHHHHHHc-CCCh--HHHHHHHHHHHcCCCChhh--hhhcCCcccCHHHHHHHHHHHHHhc
Confidence 9999974 456689999987654322 1122 2367889999999975210 1145678999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 198 DPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 198 ~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
+|++|||||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|++++.|+++++.
T Consensus 158 ~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 158 EAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMG-VVARLADDVAVMSHGRIVEQGDVETLF 229 (254)
T ss_pred CCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999998766899999999997 477899999999999999999988764
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-43 Score=394.00 Aligned_cols=219 Identities=25% Similarity=0.378 Sum_probs=192.3
Q ss_pred hhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---h-hhcccEE
Q 006505 44 ELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---A-QFRKVSG 119 (643)
Q Consensus 44 ~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~-~~~~~i~ 119 (643)
++++++|++++|+++.+|+|+||++++||+++|+||||||||||||+|+|+.+|++|+|.++|+++.. . ..++.++
T Consensus 4 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~ 83 (510)
T PRK09700 4 PYISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIG 83 (510)
T ss_pred ceEEEeeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeE
Confidence 35788999999998899999999999999999999999999999999999999999999999988743 1 2345799
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhc---CC---CCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHH
Q 006505 120 YVTQRDTLFPLLTVEETLMFSAKLR---LR---LPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGF 193 (643)
Q Consensus 120 yv~Q~~~l~~~lTv~E~l~~~~~~~---~~---~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~ 193 (643)
||+|++.+++.+||+||+.++.... .+ .+.++.+++++++++.+|+.+.. ++++++|||||||||+||+
T Consensus 84 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----~~~~~~LSgG~~qrv~ia~ 158 (510)
T PRK09700 84 IIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDL-----DEKVANLSISHKQMLEIAK 158 (510)
T ss_pred EEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCc-----ccchhhCCHHHHHHHHHHH
Confidence 9999999999999999998754211 01 12334556789999999998765 4467899999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHH
Q 006505 194 DVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLL 269 (643)
Q Consensus 194 aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 269 (643)
+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++|||++ .+.++||++++|++|++++.|+++++
T Consensus 159 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tiiivsHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~ 232 (510)
T PRK09700 159 TLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKE-GTAIVYISHKLA-EIRRICDRYTVMKDGSSVCSGMVSDV 232 (510)
T ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEeeecchhhC
Confidence 999999999999999999999999999999999875 999999999997 58889999999999999999998764
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=379.12 Aligned_cols=224 Identities=29% Similarity=0.450 Sum_probs=201.6
Q ss_pred hhhccccccccccc----ceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCC----ccEEEECCCcCCc---h-
Q 006505 45 LSKLEEAADSDGVR----RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQ----SGSTFVNGSPIDK---A- 112 (643)
Q Consensus 45 ~~~~~~~~~~~~~~----~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~----~G~I~~~g~~~~~---~- 112 (643)
+++++|+++.|... .+++||||++++||++||+|.|||||||+.++|.|++++. +|+|.++|+++.. .
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 67889998887543 6999999999999999999999999999999999999877 8999999997632 1
Q ss_pred --h-hcccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHH
Q 006505 113 --Q-FRKVSGYVTQRD--TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERR 187 (643)
Q Consensus 113 --~-~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerq 187 (643)
. ..+.|+|+||++ .+.|-+|+.+.+.-....+...+.++.++++.++|+++||.+.... ++++++|||||||
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~---~~yPheLSGG~rQ 161 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR---DRYPHQLSGGMRQ 161 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh---ccCCcccCchHHH
Confidence 2 236799999996 5778899999999887777655688889999999999999876644 6799999999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChh
Q 006505 188 RVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVD 267 (643)
Q Consensus 188 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 267 (643)
||.||+||+++|++|++||||++||+.++.+|+++|+++.++.|.++|++|||+.. +.++||||+||++|++++.|+++
T Consensus 162 Rv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~V-va~~aDrv~Vm~~G~iVE~G~~~ 240 (539)
T COG1123 162 RVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGV-VAELADRVVVMYKGEIVETGPTE 240 (539)
T ss_pred HHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHH-HHHhcCeEEEEECCEEEEecCHH
Confidence 99999999999999999999999999999999999999999999999999999985 88999999999999999999999
Q ss_pred HHHHH
Q 006505 268 LLSVS 272 (643)
Q Consensus 268 ~~~~~ 272 (643)
++.+.
T Consensus 241 ~i~~~ 245 (539)
T COG1123 241 EILSN 245 (539)
T ss_pred HHHhc
Confidence 98753
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=398.06 Aligned_cols=221 Identities=26% Similarity=0.345 Sum_probs=194.0
Q ss_pred hhhhccccccccc-----------ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc-
Q 006505 44 ELSKLEEAADSDG-----------VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK- 111 (643)
Q Consensus 44 ~~~~~~~~~~~~~-----------~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~- 111 (643)
++++++++++.|+ .+.+|+||||+|++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++..
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~ 391 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTL 391 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcC
Confidence 5788999999985 2469999999999999999999999999999999999999999999999987742
Q ss_pred -----hhhcccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCh-hhhhhhcCCCcCCCCCH
Q 006505 112 -----AQFRKVSGYVTQRD--TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLE-HVAMARVGDDRVRGISG 183 (643)
Q Consensus 112 -----~~~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~-~~~~~~vg~~~~~~LSG 183 (643)
..+++.++||+|++ .+++.+||.|++.+....+....+++.++++.++++.+||. +.. ++++++|||
T Consensus 392 ~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~-----~~~~~~LSg 466 (623)
T PRK10261 392 SPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHA-----WRYPHEFSG 466 (623)
T ss_pred CHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHh-----hCCcccCCH
Confidence 12466899999997 58999999999998654331113445567899999999995 444 457889999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEe
Q 006505 184 GERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHH 263 (643)
Q Consensus 184 GerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 263 (643)
||||||+||+||+.+|++|||||||+|||+.++.++.++|++++++.|.|||++|||++ .+.++||+|++|++|++++.
T Consensus 467 GqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~-~v~~~~dri~vl~~G~iv~~ 545 (623)
T PRK10261 467 GQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMA-VVERISHRVAVMYLGQIVEI 545 (623)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999999998766999999999997 58899999999999999999
Q ss_pred cChhHHH
Q 006505 264 GTVDLLS 270 (643)
Q Consensus 264 G~~~~~~ 270 (643)
|+++++.
T Consensus 546 g~~~~i~ 552 (623)
T PRK10261 546 GPRRAVF 552 (623)
T ss_pred cCHHHHh
Confidence 9998874
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-43 Score=324.38 Aligned_cols=199 Identities=36% Similarity=0.540 Sum_probs=180.7
Q ss_pred cccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc------hhh-cccEEEEccCCCCC
Q 006505 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK------AQF-RKVSGYVTQRDTLF 128 (643)
Q Consensus 56 ~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~------~~~-~~~i~yv~Q~~~l~ 128 (643)
+.-.||++|++.|++||-+||+|||||||||||-+++|+..|++|+|.+.|+++.. ..+ .+++|+|+|...+.
T Consensus 21 ~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Li 100 (228)
T COG4181 21 GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLI 100 (228)
T ss_pred cceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeecc
Confidence 44679999999999999999999999999999999999999999999999998743 233 36799999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q 006505 129 PLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPT 208 (643)
Q Consensus 129 ~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPt 208 (643)
|+||..||+..++.++.. +..+..+.+.++|+.+||.+.. +.+|.+|||||+|||+||||++..|++||.||||
T Consensus 101 p~ltAlENV~lPleL~ge-~~~~~~~~A~~lL~~vGLg~Rl-----~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPT 174 (228)
T COG4181 101 PNLTALENVALPLELRGE-SSADSRAGAKALLEAVGLGKRL-----THYPAQLSGGEQQRVALARAFAGRPDVLFADEPT 174 (228)
T ss_pred ccchhhhhccchhhhcCC-ccccHHHHHHHHHHHhCccccc-----ccCccccCchHHHHHHHHHHhcCCCCEEeccCCC
Confidence 999999999999988743 3444566788999999998876 5588999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEE
Q 006505 209 SGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLH 262 (643)
Q Consensus 209 sgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~ 262 (643)
-+||..+..+|.++|-.+.++.|.|.|++||||. +..-|||.+-|.+|+++.
T Consensus 175 GNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~--LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 175 GNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ--LAARCDRQLRLRSGRLVE 226 (228)
T ss_pred CCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHH--HHHhhhheeeeecceecc
Confidence 9999999999999999999999999999999985 578899999999999874
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-42 Score=359.65 Aligned_cols=222 Identities=23% Similarity=0.398 Sum_probs=188.8
Q ss_pred hhhhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCC-----CCccEEEECCCcCCc-----
Q 006505 42 QEELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLT-----PQSGSTFVNGSPIDK----- 111 (643)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~-----~~~G~I~~~g~~~~~----- 111 (643)
..+++++++++++|+++.+|+|+||++++||+++|+||||||||||+++|+|+.+ |++|+|.++|+++..
T Consensus 36 ~~~~l~i~~l~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~ 115 (285)
T PRK14254 36 GETVIEARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDP 115 (285)
T ss_pred CCceEEEEEEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccch
Confidence 4567889999999988899999999999999999999999999999999999987 689999999987632
Q ss_pred hhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHH
Q 006505 112 AQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSI 191 (643)
Q Consensus 112 ~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~i 191 (643)
..+++.++|++|++.+++. ||+||+.+....+. .+. +.+++++++++.+|+.+...... ++++.+||||||||++|
T Consensus 116 ~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~-~~~-~~~~~~~~~l~~~~l~~~i~~~~-~~~~~~LSgGe~qrv~L 191 (285)
T PRK14254 116 VALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQG-YDG-DIDERVEESLRRAALWDEVKDQL-DSSGLDLSGGQQQRLCI 191 (285)
T ss_pred HhhhccEEEEecCCccCcC-CHHHHHHHHHHHcC-CcH-HHHHHHHHHHHHcCCCchhHHHH-hCCcccCCHHHHHHHHH
Confidence 2456789999999988886 99999998755432 222 34567899999999853211111 45678999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEE-EEeCCeEEEecChhHHH
Q 006505 192 GFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSIL-MLANGSVLHHGTVDLLS 270 (643)
Q Consensus 192 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~-~L~~G~iv~~G~~~~~~ 270 (643)
|++|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||+++ .+.+++|+++ +|++|+++..|+++++.
T Consensus 192 AraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~--~~tiii~tH~~~-~i~~~~dri~v~l~~G~i~~~g~~~~~~ 268 (285)
T PRK14254 192 ARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE--EYTVVIVTHNMQ-QAARISDKTAVFLTGGELVEFDDTDKIF 268 (285)
T ss_pred HHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHH-HHHhhcCEEEEEeeCCEEEEeCCHHHHH
Confidence 9999999999999999999999999999999999975 479999999997 5788999975 67999999999987753
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=379.65 Aligned_cols=224 Identities=31% Similarity=0.462 Sum_probs=199.9
Q ss_pred hhhhhhcccccccccc-----------cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcC-
Q 006505 42 QEELSKLEEAADSDGV-----------RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI- 109 (643)
Q Consensus 42 ~~~~~~~~~~~~~~~~-----------~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~- 109 (643)
..++++++|+++.|.. ..+++||||++++||++||+|+||||||||.|+|+|+.+|++|+|.++|.+.
T Consensus 277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~ 356 (539)
T COG1123 277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLD 356 (539)
T ss_pred cCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccc
Confidence 3466789999998873 3689999999999999999999999999999999999999999999999873
Q ss_pred -Cc---hhhcccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCH
Q 006505 110 -DK---AQFRKVSGYVTQRD--TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISG 183 (643)
Q Consensus 110 -~~---~~~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSG 183 (643)
+. ...++.+-+|+||+ .|.|.+||++++............++.++++.++++.+||... +.++++.+|||
T Consensus 357 ~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~----~l~ryP~elSG 432 (539)
T COG1123 357 LTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPE----FLDRYPHELSG 432 (539)
T ss_pred cccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHH----HHhcCchhcCc
Confidence 11 34567888999986 5899999999999888766544456777889999999999842 33679999999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEe
Q 006505 184 GERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHH 263 (643)
Q Consensus 184 GerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 263 (643)
|||||++|||||+.+|+++++|||||.||+..+.+++++|+++.++.|.|.|++|||++. +..+||||++|++|++|+.
T Consensus 433 GQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~v-V~~i~drv~vm~~G~iVE~ 511 (539)
T COG1123 433 GQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAV-VRYIADRVAVMYDGRIVEE 511 (539)
T ss_pred chhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHH-HHhhCceEEEEECCeEEEe
Confidence 999999999999999999999999999999999999999999999999999999999985 8899999999999999999
Q ss_pred cChhHHH
Q 006505 264 GTVDLLS 270 (643)
Q Consensus 264 G~~~~~~ 270 (643)
|+.+++.
T Consensus 512 G~~~~v~ 518 (539)
T COG1123 512 GPTEKVF 518 (539)
T ss_pred CCHHHHh
Confidence 9888774
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-42 Score=355.68 Aligned_cols=221 Identities=21% Similarity=0.319 Sum_probs=189.6
Q ss_pred hhhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCC-----CccEEEECCCcCCc-----h
Q 006505 43 EELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTP-----QSGSTFVNGSPIDK-----A 112 (643)
Q Consensus 43 ~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~-----~~G~I~~~g~~~~~-----~ 112 (643)
.+.+.++++.++|+++.+|+|+|+++++||+++|+|+||||||||+|+|+|+++| ++|+|.++|+++.. .
T Consensus 6 ~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 85 (261)
T PRK14263 6 PIVMDCKLDKIFYGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPV 85 (261)
T ss_pred CceEEEEeEEEEeCCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchH
Confidence 3456778888999998999999999999999999999999999999999999986 69999999988632 2
Q ss_pred hhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHH
Q 006505 113 QFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIG 192 (643)
Q Consensus 113 ~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia 192 (643)
.+++.++|++|++.++ .+|+.||+.+....+. . .++.+++++++++.+++.+...... +..++.||||||||++||
T Consensus 86 ~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~-~-~~~~~~~~~~~l~~~~l~~~i~~~~-~~~~~~LS~G~~qrv~la 161 (261)
T PRK14263 86 VVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNR-Y-KGDLGDRVKHALQGAALWDEVKDKL-KVSGLSLSGGQQQRLCIA 161 (261)
T ss_pred hhhhceEEEecCCccc-cccHHHHHHHHHhhcC-c-hHHHHHHHHHHHHHcCCchhhhhhh-hCCcccCCHHHHHHHHHH
Confidence 4567799999999887 4899999998765432 1 2334567899999999865332222 457789999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEe--------CCeEEEec
Q 006505 193 FDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLA--------NGSVLHHG 264 (643)
Q Consensus 193 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~--------~G~iv~~G 264 (643)
|||+++|++|+|||||+|||+.++.++.+.|++++ + ++|||++||+++ ++.+++|++++|+ +|++++.|
T Consensus 162 ral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~-~~tii~isH~~~-~i~~~~d~v~~l~~~~~~~~~~G~i~~~g 238 (261)
T PRK14263 162 RAIATEPEVLLLDEPCSALDPIATRRVEELMVELK-K-DYTIALVTHNMQ-QAIRVADTTAFFSVDISQGTRTGYLVEMG 238 (261)
T ss_pred HHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHH-HHHHhCCEEEEEecccccccCCceEEEeC
Confidence 99999999999999999999999999999999995 3 789999999997 5889999999996 89999999
Q ss_pred ChhHHH
Q 006505 265 TVDLLS 270 (643)
Q Consensus 265 ~~~~~~ 270 (643)
+++++.
T Consensus 239 ~~~~~~ 244 (261)
T PRK14263 239 PTAQIF 244 (261)
T ss_pred CHHHHH
Confidence 988764
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-43 Score=391.68 Aligned_cols=214 Identities=26% Similarity=0.415 Sum_probs=191.0
Q ss_pred hhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhh-cccEE
Q 006505 44 ELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQF-RKVSG 119 (643)
Q Consensus 44 ~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~-~~~i~ 119 (643)
++++++|++++|+++.+|+|+||++++||+++|+||||||||||||+|+|+++|++|+|.++|+++.. ... ++.++
T Consensus 10 ~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 89 (510)
T PRK15439 10 PLLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIY 89 (510)
T ss_pred ceEEEEeEEEEeCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEE
Confidence 35789999999998899999999999999999999999999999999999999999999999988743 222 34699
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCC
Q 006505 120 YVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDP 199 (643)
Q Consensus 120 yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p 199 (643)
|++|++.+++.+||+||+.+... ..++.+++++++++.+|+.+.. ++++.+|||||||||+||++|+.+|
T Consensus 90 ~v~q~~~~~~~~tv~e~l~~~~~-----~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~LSgG~~qrv~la~aL~~~p 159 (510)
T PRK15439 90 LVPQEPLLFPNLSVKENILFGLP-----KRQASMQKMKQLLAALGCQLDL-----DSSAGSLEVADRQIVEILRGLMRDS 159 (510)
T ss_pred EEeccCccCCCCcHHHHhhcccc-----cchHHHHHHHHHHHHcCCCccc-----cCChhhCCHHHHHHHHHHHHHHcCC
Confidence 99999999999999999987532 1233456788999999998766 4467899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHH
Q 006505 200 KVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLL 269 (643)
Q Consensus 200 ~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 269 (643)
++|||||||+|||+.++..+.+.|++++++ |+|||++|||++ .+.++||++++|++|++++.|++++.
T Consensus 160 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-g~tiiivtHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (510)
T PRK15439 160 RILILDEPTASLTPAETERLFSRIRELLAQ-GVGIVFISHKLP-EIRQLADRISVMRDGTIALSGKTADL 227 (510)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecChHHc
Confidence 999999999999999999999999999875 999999999997 48899999999999999999998775
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=350.56 Aligned_cols=212 Identities=27% Similarity=0.433 Sum_probs=181.0
Q ss_pred hhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEEE
Q 006505 44 ELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGY 120 (643)
Q Consensus 44 ~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~y 120 (643)
+++++++++++|+++++++|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.. ..+++.++|
T Consensus 6 ~~i~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 85 (225)
T PRK10247 6 PLLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSY 85 (225)
T ss_pred ceEEEeccEEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEE
Confidence 35778999999988899999999999999999999999999999999999999999999999987642 345678999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCh-hhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCC
Q 006505 121 VTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLE-HVAMARVGDDRVRGISGGERRRVSIGFDVIHDP 199 (643)
Q Consensus 121 v~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~-~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p 199 (643)
++|++.+++. |++||+.+....+. .. ..+++++++++.+|+. ... +.+++.||||||||++||++|+.+|
T Consensus 86 ~~q~~~l~~~-tv~enl~~~~~~~~-~~--~~~~~~~~~l~~~~l~~~~~-----~~~~~~LS~G~~qrv~laral~~~p 156 (225)
T PRK10247 86 CAQTPTLFGD-TVYDNLIFPWQIRN-QQ--PDPAIFLDDLERFALPDTIL-----TKNIAELSGGEKQRISLIRNLQFMP 156 (225)
T ss_pred Eecccccccc-cHHHHHHhHHhhcC-CC--hHHHHHHHHHHHcCCChHHh-----cCCcccCCHHHHHHHHHHHHHhcCC
Confidence 9999988875 99999988654331 11 1235678999999995 344 4467899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEe-CCeEEEecCh
Q 006505 200 KVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLA-NGSVLHHGTV 266 (643)
Q Consensus 200 ~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~-~G~iv~~G~~ 266 (643)
++++|||||+|||+.++..+.+.|++++++.|.|||++||+++ ++ +.+|++++|+ ++..+.+|..
T Consensus 157 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~-~~-~~~d~i~~l~~~~~~~~~~~~ 222 (225)
T PRK10247 157 KVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKD-EI-NHADKVITLQPHAGEMQEARY 222 (225)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChH-HH-HhCCEEEEEecccchHhhhhh
Confidence 9999999999999999999999999998766899999999997 35 5799999995 5555566653
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=335.22 Aligned_cols=220 Identities=28% Similarity=0.438 Sum_probs=201.6
Q ss_pred hhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEEEE
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGYV 121 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~yv 121 (643)
++++++++|+|+++.+|+|+|.++++|.+++|+|||||||||||.+++.+.++++|+|+++|.++.. +.+.+.++..
T Consensus 1 MI~i~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSIL 80 (252)
T COG4604 1 MITIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSIL 80 (252)
T ss_pred CeeehhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHH
Confidence 3568899999999999999999999999999999999999999999999999999999999999854 5677888999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCC
Q 006505 122 TQRDTLFPLLTVEETLMFSAKLRL-RLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPK 200 (643)
Q Consensus 122 ~Q~~~l~~~lTv~E~l~~~~~~~~-~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~ 200 (643)
-|+......+||+|-+.|+..... +...++.++.+++.++.++|++..|+ +..+||||||||.-||..++++.+
T Consensus 81 kQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dr-----yLd~LSGGQrQRAfIAMVlaQdTd 155 (252)
T COG4604 81 KQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDR-----YLDELSGGQRQRAFIAMVLAQDTD 155 (252)
T ss_pred HhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHH-----hHHhcccchhhhhhhheeeeccCc
Confidence 999999899999999999743321 23556778899999999999998855 667999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 201 VLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 201 illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
.++||||.++||...+.++|+.|++++++.|+||+++.||.+. +..++|+|+-|++|+++..|+++++.
T Consensus 156 yvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINf-AS~YsD~IVAlK~G~vv~~G~~~eii 224 (252)
T COG4604 156 YVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINF-ASCYSDHIVALKNGKVVKQGSPDEII 224 (252)
T ss_pred EEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccH-HHhhhhheeeecCCEEEecCCHHHhc
Confidence 9999999999999999999999999999999999999999996 77899999999999999999999875
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-42 Score=357.68 Aligned_cols=217 Identities=24% Similarity=0.399 Sum_probs=182.4
Q ss_pred hhhccccccccc-ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEcc
Q 006505 45 LSKLEEAADSDG-VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQ 123 (643)
Q Consensus 45 ~~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q 123 (643)
.+++++++++|+ ++.+|+|+|+++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.....++.++|++|
T Consensus 6 ~l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q 85 (272)
T PRK15056 6 GIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQ 85 (272)
T ss_pred eEEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEecc
Confidence 467899999995 5789999999999999999999999999999999999999999999999988743222346999999
Q ss_pred CCCCC--CCCCHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcC
Q 006505 124 RDTLF--PLLTVEETLMFSAKLRL---RLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHD 198 (643)
Q Consensus 124 ~~~l~--~~lTv~E~l~~~~~~~~---~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~ 198 (643)
++.+. ...+++|++.++..... ....+..+++++++++.+|+.+..+ +.+..||||||||++||+||+.+
T Consensus 86 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----~~~~~LSgG~~qrv~laraL~~~ 160 (272)
T PRK15056 86 SEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRH-----RQIGELSGGQKKRVFLARAIAQQ 160 (272)
T ss_pred ccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhc-----CCcccCCHHHHHHHHHHHHHhcC
Confidence 97652 23478998865421100 1122334456788999999987664 46679999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHH
Q 006505 199 PKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLL 269 (643)
Q Consensus 199 p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 269 (643)
|++++|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+++|+++++ +|++++.|+++++
T Consensus 161 p~llllDEPt~~LD~~~~~~l~~~L~~~~~~-g~tviivsH~~~-~~~~~~d~v~~~-~G~i~~~g~~~~~ 228 (272)
T PRK15056 161 GQVILLDEPFTGVDVKTEARIISLLRELRDE-GKTMLVSTHNLG-SVTEFCDYTVMV-KGTVLASGPTETT 228 (272)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHH-HHHHhCCEEEEE-CCEEEeecCHHhc
Confidence 9999999999999999999999999999864 899999999997 588999999877 8999999998775
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-42 Score=354.57 Aligned_cols=219 Identities=21% Similarity=0.338 Sum_probs=186.6
Q ss_pred hhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCC-----CCccEEEECCCcCC-----chhh
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLT-----PQSGSTFVNGSPID-----KAQF 114 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~-----~~~G~I~~~g~~~~-----~~~~ 114 (643)
++++++++++|+.+++|+|+|+++++||+++|+||||||||||+|+|+|+.+ |++|+|.++|+++. ...+
T Consensus 10 ~l~i~~v~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 89 (264)
T PRK14243 10 VLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEV 89 (264)
T ss_pred EEEEeeeEEEECCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHH
Confidence 5788999999988899999999999999999999999999999999999976 37999999998763 1345
Q ss_pred cccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHH
Q 006505 115 RKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFD 194 (643)
Q Consensus 115 ~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~a 194 (643)
++.++|++|++.+++. |+.||+.+....+. .. .+.+++++++++.+++.+..+.. .++.+.+||||||||++||+|
T Consensus 90 ~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~-~~-~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LSgGq~qrv~lara 165 (264)
T PRK14243 90 RRRIGMVFQKPNPFPK-SIYDNIAYGARING-YK-GDMDELVERSLRQAALWDEVKDK-LKQSGLSLSGGQQQRLCIARA 165 (264)
T ss_pred hhhEEEEccCCccccc-cHHHHHHhhhhhcC-cc-hHHHHHHHHHHHHhCchhhHHHH-hcCCcccCCHHHHHHHHHHHH
Confidence 6789999999988884 99999988654321 11 23345677788888875322111 155778999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEe---------CCeEEEecC
Q 006505 195 VIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLA---------NGSVLHHGT 265 (643)
Q Consensus 195 L~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~---------~G~iv~~G~ 265 (643)
|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.++||++++|+ +|++++.|+
T Consensus 166 l~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tvi~vtH~~~-~~~~~~d~v~~l~~~~~~~~~~~g~i~~~~~ 242 (264)
T PRK14243 166 IAVQPEVILMDEPCSALDPISTLRIEELMHELKE--QYTIIIVTHNMQ-QAARVSDMTAFFNVELTEGGGRYGYLVEFDR 242 (264)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEecCHH-HHHHhCCEEEEEecccccccccCceEEEeCC
Confidence 9999999999999999999999999999999975 589999999997 5899999999998 799999999
Q ss_pred hhHHH
Q 006505 266 VDLLS 270 (643)
Q Consensus 266 ~~~~~ 270 (643)
++++.
T Consensus 243 ~~~~~ 247 (264)
T PRK14243 243 TEKIF 247 (264)
T ss_pred HHHHH
Confidence 98874
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=352.26 Aligned_cols=212 Identities=30% Similarity=0.536 Sum_probs=173.4
Q ss_pred hccccccccc--ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEEEE
Q 006505 47 KLEEAADSDG--VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGYV 121 (643)
Q Consensus 47 ~~~~~~~~~~--~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~yv 121 (643)
++++++++|+ .+++|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ..+++.++|+
T Consensus 2 ~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (237)
T cd03252 2 TFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVV 81 (237)
T ss_pred EEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEE
Confidence 4678888885 3679999999999999999999999999999999999999999999999987642 3456789999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHH-----HHHHHHHHHc--CChhhhhhhcCCCcCCCCCHHHHHHHHHHHH
Q 006505 122 TQRDTLFPLLTVEETLMFSAKLRLRLPQAQLR-----ARVKSLVKEL--GLEHVAMARVGDDRVRGISGGERRRVSIGFD 194 (643)
Q Consensus 122 ~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~-----~~v~~~l~~l--gl~~~~~~~vg~~~~~~LSGGerqRv~ia~a 194 (643)
+|++.+++ .||+||+.+... ....+... ....++++.+ +++... +..+.+|||||||||+||++
T Consensus 82 ~q~~~~~~-~tv~~nl~~~~~---~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~-----~~~~~~LSgG~~qrv~lara 152 (237)
T cd03252 82 LQENVLFN-RSIRDNIALADP---GMSMERVIEAAKLAGAHDFISELPEGYDTIV-----GEQGAGLSGGQRQRIAIARA 152 (237)
T ss_pred cCCchhcc-chHHHHhhccCC---CCCHHHHHHHHHHcCcHHHHHhCcccccchh-----hcCCCcCCHHHHHHHHHHHH
Confidence 99988776 699999987431 11111111 1122334433 333222 34678999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 195 VIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 195 L~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
|+.+|++++|||||+|||+.++..+.+.|++++ + |+|||++||+++ ++ +.+|++++|++|++++.|+++++.+
T Consensus 153 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~-~~-~~~d~v~~l~~G~i~~~~~~~~~~~ 225 (237)
T cd03252 153 LIHNPRILIFDEATSALDYESEHAIMRNMHDIC-A-GRTVIIIAHRLS-TV-KNADRIIVMEKGRIVEQGSHDELLA 225 (237)
T ss_pred HhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCCHH-HH-HhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999999999996 3 899999999997 35 5699999999999999999887643
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-42 Score=394.98 Aligned_cols=225 Identities=25% Similarity=0.345 Sum_probs=193.2
Q ss_pred hhhhhccccccccc----ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCC--------
Q 006505 43 EELSKLEEAADSDG----VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPID-------- 110 (643)
Q Consensus 43 ~~~~~~~~~~~~~~----~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~-------- 110 (643)
.++++++++++.|+ .+++|+||||++++||++||+||||||||||+|+|+|+++|++|+|.++|.++.
T Consensus 10 ~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~ 89 (623)
T PRK10261 10 RDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIE 89 (623)
T ss_pred CceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccc
Confidence 45788999999996 357999999999999999999999999999999999999999999999986331
Q ss_pred -----ch---hhc-ccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCC
Q 006505 111 -----KA---QFR-KVSGYVTQRD--TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVR 179 (643)
Q Consensus 111 -----~~---~~~-~~i~yv~Q~~--~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~ 179 (643)
.. .++ +.+|||+|++ .+++.+||.||+.++.+.....+.++.++++.++++.+||.+..+ ..++++.
T Consensus 90 ~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~--~~~~~~~ 167 (623)
T PRK10261 90 LSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQT--ILSRYPH 167 (623)
T ss_pred cccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhh--HHhCCCc
Confidence 11 222 4799999997 688999999999998764323345566678999999999953110 1155788
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCe
Q 006505 180 GISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGS 259 (643)
Q Consensus 180 ~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 259 (643)
+|||||||||+||+||+.+|++|||||||+|||+.++.++.++|++++++.|+|||++|||++ .+.++||+|++|++|+
T Consensus 168 ~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~-~~~~~adri~vl~~G~ 246 (623)
T PRK10261 168 QLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMG-VVAEIADRVLVMYQGE 246 (623)
T ss_pred cCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEeeCCe
Confidence 999999999999999999999999999999999999999999999998766999999999997 5889999999999999
Q ss_pred EEEecChhHHH
Q 006505 260 VLHHGTVDLLS 270 (643)
Q Consensus 260 iv~~G~~~~~~ 270 (643)
+++.|+++++.
T Consensus 247 i~~~g~~~~~~ 257 (623)
T PRK10261 247 AVETGSVEQIF 257 (623)
T ss_pred ecccCCHHHhh
Confidence 99999988764
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-42 Score=385.93 Aligned_cols=215 Identities=24% Similarity=0.348 Sum_probs=188.2
Q ss_pred cccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc----hhhcccEEEEcc
Q 006505 48 LEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK----AQFRKVSGYVTQ 123 (643)
Q Consensus 48 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~----~~~~~~i~yv~Q 123 (643)
++|++++|+++++|+|+|+++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++.. ...++.++|++|
T Consensus 1 ~~nl~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q 80 (491)
T PRK10982 1 MSNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQ 80 (491)
T ss_pred CCceEEEeCCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEec
Confidence 3678889988899999999999999999999999999999999999999999999999998742 234567999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCE
Q 006505 124 RDTLFPLLTVEETLMFSAKLRLR--LPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKV 201 (643)
Q Consensus 124 ~~~l~~~lTv~E~l~~~~~~~~~--~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~i 201 (643)
++.+++.+||+||+.+....... ...++..++++++++.+|+.+.. ++.+.+|||||||||+||++|+.+|++
T Consensus 81 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~LSgGq~qrv~lA~al~~~p~l 155 (491)
T PRK10982 81 ELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDP-----RAKVATLSVSQMQMIEIAKAFSYNAKI 155 (491)
T ss_pred ccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCc-----cCchhhCCHHHHHHHHHHHHHHhCCCE
Confidence 99899999999999875421111 13344456789999999998665 446789999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHH
Q 006505 202 LILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLL 269 (643)
Q Consensus 202 lllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 269 (643)
|||||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.++||++++|++|+++..|++++.
T Consensus 156 llLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tvii~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 156 VIMDEPTSSLTEKEVNHLFTIIRKLKER-GCGIVYISHKME-EIFQLCDEITILRDGQWIATQPLAGL 221 (491)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCHH-HHHHhCCEEEEEECCEEEeecChhhC
Confidence 9999999999999999999999999864 999999999997 58889999999999999999998764
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-42 Score=341.65 Aligned_cols=199 Identities=29% Similarity=0.382 Sum_probs=175.2
Q ss_pred hhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc--hhhcccEEEEcc
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK--AQFRKVSGYVTQ 123 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~--~~~~~~i~yv~Q 123 (643)
+++++++++|+.+++|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ..+++.++|++|
T Consensus 2 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~ 81 (204)
T PRK13538 2 LEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGH 81 (204)
T ss_pred eEEEEEEEEECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeCC
Confidence 467889999988899999999999999999999999999999999999999999999999988743 345678999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEE
Q 006505 124 RDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLI 203 (643)
Q Consensus 124 ~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~ill 203 (643)
++.+++.+|+.||+.+....+. . ..+++++++++.+|+.+..+ ..+..||||||||++||+||+++|++++
T Consensus 82 ~~~~~~~~tv~e~l~~~~~~~~-~---~~~~~~~~~l~~~gl~~~~~-----~~~~~LS~G~~qrl~la~al~~~p~lll 152 (204)
T PRK13538 82 QPGIKTELTALENLRFYQRLHG-P---GDDEALWEALAQVGLAGFED-----VPVRQLSAGQQRRVALARLWLTRAPLWI 152 (204)
T ss_pred ccccCcCCcHHHHHHHHHHhcC-c---cHHHHHHHHHHHcCCHHHhh-----CChhhcCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999998764431 1 23457889999999987664 4678999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEE
Q 006505 204 LDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILML 255 (643)
Q Consensus 204 lDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L 255 (643)
|||||+|||+.++..+.+.|++++++ |.|||++||+++ .+.+..+|++++
T Consensus 153 lDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiii~sh~~~-~i~~~~~~~~~~ 202 (204)
T PRK13538 153 LDEPFTAIDKQGVARLEALLAQHAEQ-GGMVILTTHQDL-PVASDKVRKLRL 202 (204)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHHHC-CCEEEEEecChh-hhccCCceEEec
Confidence 99999999999999999999999764 899999999997 476766788776
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-42 Score=349.92 Aligned_cols=220 Identities=23% Similarity=0.413 Sum_probs=187.9
Q ss_pred hhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCC-----CCccEEEECCCcCCc-----hhhc
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLT-----PQSGSTFVNGSPIDK-----AQFR 115 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~-----~~~G~I~~~g~~~~~-----~~~~ 115 (643)
+.++++++.|+++++|+|+|+++++||+++|+||||||||||+++|+|+.+ |++|+|.+||+++.. ...+
T Consensus 4 l~~~~v~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~ 83 (250)
T PRK14266 4 IEVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELR 83 (250)
T ss_pred EEEEeEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHh
Confidence 457888889988889999999999999999999999999999999999864 379999999988642 2456
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHH
Q 006505 116 KVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDV 195 (643)
Q Consensus 116 ~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL 195 (643)
+.++|++|++.+++. |++||+.+..........+..++++.++++.+|+.+...... +..+..||||||||++||++|
T Consensus 84 ~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~Gq~qrv~laral 161 (250)
T PRK14266 84 KKVGMVFQKPNPFPK-SIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKL-DKSALGLSGGQQQRLCIARTI 161 (250)
T ss_pred hheEEEecCCccCcc-hHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHH-hCCcccCCHHHHHHHHHHHHH
Confidence 789999999988885 999999876543211233445677889999999854322222 557889999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 196 IHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 196 ~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||+++ ++.+.+|++++|++|++++.|+++++.
T Consensus 162 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~~tiii~sh~~~-~~~~~~~~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14266 162 AVSPEVILMDEPCSALDPISTTKIEDLIHKLKE--DYTIVIVTHNMQ-QATRVSKYTSFFLNGEIIESGLTDQIF 233 (250)
T ss_pred HcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEECCHH-HHHhhcCEEEEEECCeEEEeCCHHHHH
Confidence 999999999999999999999999999999953 789999999997 588999999999999999999988763
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-42 Score=344.14 Aligned_cols=203 Identities=23% Similarity=0.302 Sum_probs=179.9
Q ss_pred hhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEcc
Q 006505 44 ELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQ 123 (643)
Q Consensus 44 ~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q 123 (643)
+++.+++++++|+++++++++|+++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.....++.++|++|
T Consensus 10 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q 89 (214)
T PRK13543 10 PLLAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGH 89 (214)
T ss_pred ceEEEeeEEEecCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeec
Confidence 46789999999988899999999999999999999999999999999999999999999999998754344567999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEE
Q 006505 124 RDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLI 203 (643)
Q Consensus 124 ~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~ill 203 (643)
++.+++.+|++||+.+....+. . ...+.++++++.+++.+.. +..+..||||||||++||++++.+|++++
T Consensus 90 ~~~~~~~~t~~e~l~~~~~~~~-~---~~~~~~~~~l~~~~l~~~~-----~~~~~~LS~G~~qrv~laral~~~p~lll 160 (214)
T PRK13543 90 LPGLKADLSTLENLHFLCGLHG-R---RAKQMPGSALAIVGLAGYE-----DTLVRQLSAGQKKRLALARLWLSPAPLWL 160 (214)
T ss_pred CcccccCCcHHHHHHHHHHhcC-C---cHHHHHHHHHHHcCChhhc-----cCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999988754421 1 1234678899999998766 44668999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeC
Q 006505 204 LDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLAN 257 (643)
Q Consensus 204 lDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 257 (643)
|||||+|||+.++..+.+.|++++++ |.|||++|||++ ++.+++|++++++.
T Consensus 161 lDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH~~~-~~~~~~~~i~~l~~ 212 (214)
T PRK13543 161 LDEPYANLDLEGITLVNRMISAHLRG-GGAALVTTHGAY-AAPPVRTRMLTLEA 212 (214)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEecChh-hhhhhcceEEEEee
Confidence 99999999999999999999999875 899999999998 58899999999863
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-42 Score=349.84 Aligned_cols=218 Identities=23% Similarity=0.344 Sum_probs=184.1
Q ss_pred hhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcC--CCCCccEEEECCCcCCc---hhhcc-cE
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGK--LTPQSGSTFVNGSPIDK---AQFRK-VS 118 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~--~~~~~G~I~~~g~~~~~---~~~~~-~i 118 (643)
++++++++++|+++.+|+|+|+++++||+++|+||||||||||+++|+|+ ++|++|+|.++|.++.. ...++ .+
T Consensus 7 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 86 (252)
T CHL00131 7 ILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGI 86 (252)
T ss_pred eEEEEeEEEEeCCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeE
Confidence 56789999999888899999999999999999999999999999999998 57899999999988743 22222 47
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhcC---C---CCHHHHHHHHHHHHHHcCCh-hhhhhhcCCCcCC-CCCHHHHHHHH
Q 006505 119 GYVTQRDTLFPLLTVEETLMFSAKLRL---R---LPQAQLRARVKSLVKELGLE-HVAMARVGDDRVR-GISGGERRRVS 190 (643)
Q Consensus 119 ~yv~Q~~~l~~~lTv~E~l~~~~~~~~---~---~~~~~~~~~v~~~l~~lgl~-~~~~~~vg~~~~~-~LSGGerqRv~ 190 (643)
+|++|++.+++.+|+.|++.+...... . ....+..+++.++++.+|+. +.. ++.+. +||||||||++
T Consensus 87 ~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~~LSgG~~qrv~ 161 (252)
T CHL00131 87 FLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFL-----SRNVNEGFSGGEKKRNE 161 (252)
T ss_pred EEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhh-----ccccccCCCHHHHHHHH
Confidence 899999999999999999987543211 0 11223346778899999996 344 33455 59999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhh-cCEEEEEeCCeEEEecChhHH
Q 006505 191 IGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKM-FNSILMLANGSVLHHGTVDLL 269 (643)
Q Consensus 191 ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~-~D~v~~L~~G~iv~~G~~~~~ 269 (643)
||+||+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||++||+++. +... +|++++|++|++++.|+++.+
T Consensus 162 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~~tH~~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 239 (252)
T CHL00131 162 ILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMT-SENSIILITHYQRL-LDYIKPDYVHVMQNGKIIKTGDAELA 239 (252)
T ss_pred HHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHHH-HHhhhCCEEEEEeCCEEEEecChhhh
Confidence 99999999999999999999999999999999999986 48999999999874 6565 899999999999999998843
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-42 Score=385.62 Aligned_cols=220 Identities=26% Similarity=0.403 Sum_probs=190.6
Q ss_pred hcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCC--CCCccEEEEC-------------------
Q 006505 47 KLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKL--TPQSGSTFVN------------------- 105 (643)
Q Consensus 47 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~--~~~~G~I~~~------------------- 105 (643)
+++|++++|+++.+|+|+|+++++||+++|+||||||||||||+|+|+. +|++|+|.++
T Consensus 2 ~~~~l~~~~~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~ 81 (520)
T TIGR03269 2 EVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEP 81 (520)
T ss_pred EEEEEEEEECCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccccc
Confidence 4688999998889999999999999999999999999999999999997 6999999997
Q ss_pred ----CCcCC----------c---hhhcccEEEEccC-CCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChh
Q 006505 106 ----GSPID----------K---AQFRKVSGYVTQR-DTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEH 167 (643)
Q Consensus 106 ----g~~~~----------~---~~~~~~i~yv~Q~-~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~ 167 (643)
|.++. . ...++.++|++|+ +.+++.+||+||+.+..... +.+.++.++++.++++.+||++
T Consensus 82 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~ 160 (520)
T TIGR03269 82 CPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEI-GYEGKEAVGRAVDLIEMVQLSH 160 (520)
T ss_pred cccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCChh
Confidence 22210 0 1245679999998 67888899999999876432 2344555678999999999987
Q ss_pred hhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHh
Q 006505 168 VAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVK 247 (643)
Q Consensus 168 ~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~ 247 (643)
.. ++.+++|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|++++++.|+|||++|||++ .+.+
T Consensus 161 ~~-----~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~-~~~~ 234 (520)
T TIGR03269 161 RI-----THIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPE-VIED 234 (520)
T ss_pred hh-----hcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHH
Confidence 66 44678999999999999999999999999999999999999999999999997766999999999997 4788
Q ss_pred hcCEEEEEeCCeEEEecChhHHHHHH
Q 006505 248 MFNSILMLANGSVLHHGTVDLLSVSL 273 (643)
Q Consensus 248 ~~D~v~~L~~G~iv~~G~~~~~~~~f 273 (643)
+||++++|++|++++.|++++..+.+
T Consensus 235 ~~d~i~~l~~G~i~~~g~~~~~~~~~ 260 (520)
T TIGR03269 235 LSDKAIWLENGEIKEEGTPDEVVAVF 260 (520)
T ss_pred hcCEEEEEeCCEEeeecCHHHHHHHH
Confidence 99999999999999999998876543
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-42 Score=362.33 Aligned_cols=221 Identities=21% Similarity=0.352 Sum_probs=189.2
Q ss_pred hhhhccccccccc--ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCC-----CCccEEEECCCcCCc-----
Q 006505 44 ELSKLEEAADSDG--VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLT-----PQSGSTFVNGSPIDK----- 111 (643)
Q Consensus 44 ~~~~~~~~~~~~~--~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~-----~~~G~I~~~g~~~~~----- 111 (643)
.++.+++++.+|. .+.+|+|+|++|++||+++|+||||||||||+++|+|+.+ |++|+|.++|+++..
T Consensus 79 ~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~ 158 (329)
T PRK14257 79 NVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISS 158 (329)
T ss_pred ceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 3678899999984 4579999999999999999999999999999999999986 569999999998852
Q ss_pred hhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHH
Q 006505 112 AQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLP-QAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVS 190 (643)
Q Consensus 112 ~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~-~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ 190 (643)
..+++.++||||++.+++ .|++||+.|+.... ... .+..++.+.++++.++|.+..++.+ ++.+..||||||||++
T Consensus 159 ~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~-~~~~~~~~~~~~~~~l~~~~L~~~l~~~~-~~~~~~LSgGqkqRl~ 235 (329)
T PRK14257 159 LELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNN-GINDRKILEKIVEKSLKSAALWDEVKDDL-DKAGNALSGGQQQRLC 235 (329)
T ss_pred HhhhccEEEEecCCccCC-CcHHHHHHhHHHhc-CCChHHHHHHHHHHHHHHcCCcchhhhhh-hCCcccCCHHHHHHHH
Confidence 346778999999999886 69999999865432 122 2233455788899998854333333 4678899999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 191 IGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 191 ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
|||||+.+|+||+|||||+|||+.+...+.+.|+++++ ++|||++||+++ .+.+++|+|++|++|++++.|+++++.
T Consensus 236 LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~--~~Tii~iTH~l~-~i~~~~Driivl~~G~i~e~g~~~~l~ 312 (329)
T PRK14257 236 IARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK--KYSIIIVTHSMA-QAQRISDETVFFYQGWIEEAGETKTIF 312 (329)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999999999874 699999999997 478889999999999999999999875
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-42 Score=354.28 Aligned_cols=220 Identities=23% Similarity=0.342 Sum_probs=186.4
Q ss_pred hhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCC-----CccEEEECCCcCCc-----hh
Q 006505 44 ELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTP-----QSGSTFVNGSPIDK-----AQ 113 (643)
Q Consensus 44 ~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~-----~~G~I~~~g~~~~~-----~~ 113 (643)
+++++++++++|+++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| ++|+|.++|+++.. ..
T Consensus 19 ~~l~~~nl~~~~~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~ 98 (274)
T PRK14265 19 SVFEVEGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVK 98 (274)
T ss_pred ceEEEeeEEEEeCCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHH
Confidence 467899999999988999999999999999999999999999999999999863 58999999988632 24
Q ss_pred hcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHH
Q 006505 114 FRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGF 193 (643)
Q Consensus 114 ~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~ 193 (643)
+++.++|++|++.+++. ||.||+.+....+. . ....++.+++.++.+++....... -+.++..|||||||||+||+
T Consensus 99 ~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~-~-~~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LSgGq~qrv~LAr 174 (274)
T PRK14265 99 LRRQVGMVFQRPNPFPK-SIYENIAFAPRANG-Y-KGNLDELVEDSLRRAAIWEEVKDK-LKEKGTALSGGQQQRLCIAR 174 (274)
T ss_pred HhhcEEEEccCCccccc-cHHHHHHhHHHhcC-c-hHHHHHHHHHHHHHcccchhhHHH-hcCCcccCCHHHHHHHHHHH
Confidence 56789999999988875 99999988654321 1 112334567788888874321111 14577899999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEe---------CCeEEEec
Q 006505 194 DVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLA---------NGSVLHHG 264 (643)
Q Consensus 194 aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~---------~G~iv~~G 264 (643)
||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+++|++++|+ +|++++.|
T Consensus 175 aL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tiii~sH~~~-~~~~~~d~i~~l~~~~~~~~~~~G~~~~~g 251 (274)
T PRK14265 175 AIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE--QYTIIMVTHNMQ-QASRVADWTAFFNTEIDEYGKRRGKLVEFS 251 (274)
T ss_pred HHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHH-HHHHhCCEEEEEecccccccccCceEEEeC
Confidence 99999999999999999999999999999999964 689999999997 5889999999997 89999999
Q ss_pred ChhHHH
Q 006505 265 TVDLLS 270 (643)
Q Consensus 265 ~~~~~~ 270 (643)
+++++.
T Consensus 252 ~~~~~~ 257 (274)
T PRK14265 252 PTEQMF 257 (274)
T ss_pred CHHHHH
Confidence 998874
|
|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=348.70 Aligned_cols=208 Identities=29% Similarity=0.460 Sum_probs=179.5
Q ss_pred cccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEEEEccC
Q 006505 48 LEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGYVTQR 124 (643)
Q Consensus 48 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~yv~Q~ 124 (643)
+++++++ .+|+|+|+++++||+++|+||||||||||+++|+|+.++ +|+|.++|+++.. ...++.++|++|+
T Consensus 3 ~~~l~~~----~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~i~~v~q~ 77 (248)
T PRK03695 3 LNDVAVS----TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARHRAYLSQQ 77 (248)
T ss_pred ccccchh----ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHHhhheEEeccc
Confidence 4566654 389999999999999999999999999999999999864 9999999998743 3345679999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhc-------
Q 006505 125 DTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIH------- 197 (643)
Q Consensus 125 ~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~------- 197 (643)
+.+++.+|++||+.+.... ....++..++++++++.+|+.+.. ++.++.||||||||++||++|+.
T Consensus 78 ~~~~~~~tv~~nl~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~LS~G~~qrv~la~al~~~~~~~~p 150 (248)
T PRK03695 78 QTPPFAMPVFQYLTLHQPD--KTRTEAVASALNEVAEALGLDDKL-----GRSVNQLSGGEWQRVRLAAVVLQVWPDINP 150 (248)
T ss_pred CccCCCccHHHHHHhcCcc--CCCcHHHHHHHHHHHHHcCCHhHh-----cCCcccCCHHHHHHHHHHHHHhccccccCC
Confidence 8888889999999876322 122334456789999999998765 44678999999999999999998
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHH
Q 006505 198 DPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLL 269 (643)
Q Consensus 198 ~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 269 (643)
+|++++|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+++|++++|++|++++.|+++++
T Consensus 151 ~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~-~~tvi~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 220 (248)
T PRK03695 151 AGQLLLLDEPMNSLDVAQQAALDRLLSELCQQ-GIAVVMSSHDLN-HTLRHADRVWLLKQGKLLASGRRDEV 220 (248)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHH
Confidence 67999999999999999999999999999864 899999999997 58899999999999999999988765
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-42 Score=348.64 Aligned_cols=212 Identities=29% Similarity=0.458 Sum_probs=175.8
Q ss_pred hccccccccccc--ceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEEEE
Q 006505 47 KLEEAADSDGVR--RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGYV 121 (643)
Q Consensus 47 ~~~~~~~~~~~~--~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~yv 121 (643)
++++++++|+++ .+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ...++.++|+
T Consensus 2 ~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (234)
T cd03251 2 EFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLV 81 (234)
T ss_pred EEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEe
Confidence 467888888765 79999999999999999999999999999999999999999999999987632 3456789999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHH-----HHHHHHHHc--CChhhhhhhcCCCcCCCCCHHHHHHHHHHHH
Q 006505 122 TQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRA-----RVKSLVKEL--GLEHVAMARVGDDRVRGISGGERRRVSIGFD 194 (643)
Q Consensus 122 ~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~-----~v~~~l~~l--gl~~~~~~~vg~~~~~~LSGGerqRv~ia~a 194 (643)
+|++.+++ .||+||+.+.... ...++..+ .+.+.++.+ ++++.. +..+..||||||||++||++
T Consensus 82 ~q~~~~~~-~tv~enl~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-----~~~~~~LS~G~~qrv~la~a 152 (234)
T cd03251 82 SQDVFLFN-DTVAENIAYGRPG---ATREEVEEAARAANAHEFIMELPEGYDTVI-----GERGVKLSGGQRQRIAIARA 152 (234)
T ss_pred CCCCeecc-ccHHHHhhccCCC---CCHHHHHHHHHHcCcHHHHHhcccCcceee-----ccCCCcCCHHHHHHHHHHHH
Confidence 99998887 5999999875321 11111111 234455554 444333 44678999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 195 VIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 195 L~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
|+.+|++++|||||+|||+.++..+.+.|++++ + |+|||++||+++ ++. .+|++++|++|+++..|+++++.+
T Consensus 153 l~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~-~~~-~~d~v~~l~~G~i~~~~~~~~~~~ 225 (234)
T cd03251 153 LLKDPPILILDEATSALDTESERLVQAALERLM-K-NRTTFVIAHRLS-TIE-NADRIVVLEDGKIVERGTHEELLA 225 (234)
T ss_pred HhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-C-CCEEEEEecCHH-HHh-hCCEEEEecCCeEeeeCCHHHHHH
Confidence 999999999999999999999999999999996 3 899999999997 465 499999999999999999887644
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=351.07 Aligned_cols=223 Identities=21% Similarity=0.355 Sum_probs=187.7
Q ss_pred hhhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCC-----CccEEEECCCcCC-------
Q 006505 43 EELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTP-----QSGSTFVNGSPID------- 110 (643)
Q Consensus 43 ~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~-----~~G~I~~~g~~~~------- 110 (643)
...+++++++++|+++++|+|+|+++++||+++|+|+||||||||+++|+|+.+| ++|+|.++|.++.
T Consensus 14 ~~~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~ 93 (265)
T PRK14252 14 QQKSEVNKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVD 93 (265)
T ss_pred CceEEEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccC
Confidence 3457889999999888999999999999999999999999999999999999875 6999999997653
Q ss_pred chhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHH
Q 006505 111 KAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVS 190 (643)
Q Consensus 111 ~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ 190 (643)
...+++.++|++|++.+++. |++||+.+..........+..++++.++++.+++.+..... -++.+..||||||||++
T Consensus 94 ~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LS~G~~qrv~ 171 (265)
T PRK14252 94 PIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDR-LGDLAFNLSGGQQQRLC 171 (265)
T ss_pred HHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHH-HhCCcccCCHHHHHHHH
Confidence 12456789999999999986 99999988654321112223346778888888874211111 14567899999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 191 IGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 191 ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+++|++++|++|+++..|+.+++.
T Consensus 172 laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~--~~tiiivth~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 248 (265)
T PRK14252 172 IARALATDPEILLFDEPTSALDPIATASIEELISDLKN--KVTILIVTHNMQ-QAARVSDYTAYMYMGELIEFGATDTIF 248 (265)
T ss_pred HHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh--CCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999964 689999999997 588899999999999999999987764
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-42 Score=337.66 Aligned_cols=183 Identities=53% Similarity=0.866 Sum_probs=165.7
Q ss_pred hhcccccccccc------cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCC--CCCccEEEECCCcCCchhhccc
Q 006505 46 SKLEEAADSDGV------RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKL--TPQSGSTFVNGSPIDKAQFRKV 117 (643)
Q Consensus 46 ~~~~~~~~~~~~------~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~--~~~~G~I~~~g~~~~~~~~~~~ 117 (643)
+++++++++|+. +++|+|+|+++++||+++|+||||||||||+++|+|+. +|++|+|.++|+++.....++.
T Consensus 4 l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~ 83 (194)
T cd03213 4 LSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKI 83 (194)
T ss_pred EEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhhe
Confidence 457888888875 68999999999999999999999999999999999999 9999999999998865456778
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhc
Q 006505 118 SGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIH 197 (643)
Q Consensus 118 i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~ 197 (643)
++|++|++.+++.+|++||+.+.... ..||||||||++||+||+.
T Consensus 84 i~~~~q~~~~~~~~t~~~~i~~~~~~-----------------------------------~~LS~G~~qrv~laral~~ 128 (194)
T cd03213 84 IGYVPQDDILHPTLTVRETLMFAAKL-----------------------------------RGLSGGERKRVSIALELVS 128 (194)
T ss_pred EEEccCcccCCCCCcHHHHHHHHHHh-----------------------------------ccCCHHHHHHHHHHHHHHc
Confidence 99999999999999999999764311 0799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEec
Q 006505 198 DPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHG 264 (643)
Q Consensus 198 ~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 264 (643)
+|++++|||||+|||+.++..+.+.|++++++ |+|+|+++|+++.++.+++|++++|++|++++.|
T Consensus 129 ~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~-~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 129 NPSLLFLDEPTSGLDSSSALQVMSLLRRLADT-GRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999764 9999999999964578899999999999998764
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-42 Score=421.81 Aligned_cols=223 Identities=26% Similarity=0.434 Sum_probs=202.1
Q ss_pred hhhhcccccccccc--cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc--hhhcccEE
Q 006505 44 ELSKLEEAADSDGV--RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK--AQFRKVSG 119 (643)
Q Consensus 44 ~~~~~~~~~~~~~~--~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~--~~~~~~i~ 119 (643)
.++++++++++|++ +.+|+|||+.|++||++||+||||||||||+|+|+|+.+|++|+|.++|+++.. ...++.+|
T Consensus 1936 ~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IG 2015 (2272)
T TIGR01257 1936 DILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMG 2015 (2272)
T ss_pred ceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEE
Confidence 35778999999985 679999999999999999999999999999999999999999999999998743 34567899
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCC
Q 006505 120 YVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDP 199 (643)
Q Consensus 120 yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p 199 (643)
|+||++.+++.+||+|++.+.++++ +.++++.+++++++++.+||.+.+|+ ++++||||||||++||+||+.+|
T Consensus 2016 y~pQ~~~L~~~LTv~E~L~l~a~l~-g~~~~~~~~~v~~lLe~lgL~~~~dk-----~~~~LSGGqKqRLslA~ALi~~P 2089 (2272)
T TIGR01257 2016 YCPQFDAIDDLLTGREHLYLYARLR-GVPAEEIEKVANWSIQSLGLSLYADR-----LAGTYSGGNKRKLSTAIALIGCP 2089 (2272)
T ss_pred EEeccccCCCCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCHHHhcC-----ChhhCCHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999887765 33455556788999999999887744 66799999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHHHHH
Q 006505 200 KVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSVSLR 274 (643)
Q Consensus 200 ~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~ 274 (643)
+++||||||+|||+.+++.+++.|++++++ |+|||++||+++ ++.++|||+++|++|+++..|+++++...+.
T Consensus 2090 ~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~-g~TIILtTH~me-e~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~~g 2162 (2272)
T TIGR01257 2090 PLVLLDEPTTGMDPQARRMLWNTIVSIIRE-GRAVVLTSHSME-ECEALCTRLAIMVKGAFQCLGTIQHLKSKFG 2162 (2272)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHHHHhC
Confidence 999999999999999999999999999875 999999999997 6899999999999999999999999987765
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=343.43 Aligned_cols=202 Identities=25% Similarity=0.379 Sum_probs=175.2
Q ss_pred hhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEccCC
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRD 125 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~ 125 (643)
+.+++++++|+.+++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ..+..
T Consensus 23 l~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~---------~~~~~ 93 (224)
T cd03220 23 LGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSL---------LGLGG 93 (224)
T ss_pred hhhhhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchh---------hcccc
Confidence 567899999999999999999999999999999999999999999999999999999999986531 11123
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q 006505 126 TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILD 205 (643)
Q Consensus 126 ~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlD 205 (643)
.+.+.+||+||+.+..... ....++.+++++++++.+|+++..++ .+.+||||||||++||++|+.+|++++||
T Consensus 94 ~~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LSgG~~qrv~laral~~~p~llllD 167 (224)
T cd03220 94 GFNPELTGRENIYLNGRLL-GLSRKEIDEKIDEIIEFSELGDFIDL-----PVKTYSSGMKARLAFAIATALEPDILLID 167 (224)
T ss_pred cCCCCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCChhhhhC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 4456789999998876533 22344455678899999999876644 56799999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEec
Q 006505 206 EPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHG 264 (643)
Q Consensus 206 EPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 264 (643)
|||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+++|++++|++|++++.|
T Consensus 168 EP~~gLD~~~~~~~~~~l~~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 168 EVLAVGDAAFQEKCQRRLRELLKQ-GKTVILVSHDPS-SIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999875 899999999997 578899999999999998765
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-42 Score=384.86 Aligned_cols=226 Identities=28% Similarity=0.445 Sum_probs=190.6
Q ss_pred hhhhhccccccccc-----ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEEC-CCc---CCc--
Q 006505 43 EELSKLEEAADSDG-----VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVN-GSP---IDK-- 111 (643)
Q Consensus 43 ~~~~~~~~~~~~~~-----~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~-g~~---~~~-- 111 (643)
.+++++++++++|+ .+.+|+|+||++++||+++|+||||||||||+|+|+|+.+|++|+|.++ |.+ +..
T Consensus 277 ~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~ 356 (520)
T TIGR03269 277 EPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPG 356 (520)
T ss_pred CceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccc
Confidence 34788999999984 3579999999999999999999999999999999999999999999996 642 211
Q ss_pred ----hhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHH
Q 006505 112 ----AQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERR 187 (643)
Q Consensus 112 ----~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerq 187 (643)
...++.++|++|++.+++.+||.||+.+...+. .+.++.++++.++++.+|+.+.......++++.+|||||||
T Consensus 357 ~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~q 434 (520)
T TIGR03269 357 PDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE--LPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERH 434 (520)
T ss_pred hhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC--CCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHH
Confidence 123567999999998999999999998764332 23333456788999999996410000114577899999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChh
Q 006505 188 RVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVD 267 (643)
Q Consensus 188 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 267 (643)
||+||+||+.+|++|||||||+|||+.++..+++.|++++++.|.|||++|||++ .+.++||++++|++|+++..|+++
T Consensus 435 rv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~G~i~~~g~~~ 513 (520)
T TIGR03269 435 RVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD-FVLDVCDRAALMRDGKIVKIGDPE 513 (520)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHH
Confidence 9999999999999999999999999999999999999998766899999999997 588999999999999999999988
Q ss_pred HHHH
Q 006505 268 LLSV 271 (643)
Q Consensus 268 ~~~~ 271 (643)
++.+
T Consensus 514 ~~~~ 517 (520)
T TIGR03269 514 EIVE 517 (520)
T ss_pred HHHh
Confidence 7654
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-42 Score=315.92 Aligned_cols=216 Identities=33% Similarity=0.484 Sum_probs=196.1
Q ss_pred hhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---------hhhcc
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---------AQFRK 116 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---------~~~~~ 116 (643)
++++|+...||..++|.|++++.++||-+.++||||||||||+|.|.=+..|.+|+..+.|...+- .++|+
T Consensus 3 irv~~in~~yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~ 82 (242)
T COG4161 3 IQLNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRR 82 (242)
T ss_pred eEEcccccccccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHH
Confidence 468899999999999999999999999999999999999999999999999999999999875421 35788
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHh
Q 006505 117 VSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVI 196 (643)
Q Consensus 117 ~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~ 196 (643)
.+|+|+|+..++|++||.||+.-+-.--.+.++++.+.++.++|+.+.|.+.+ |+++-.|||||+|||+|||||+
T Consensus 83 ~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~a-----dr~plhlsggqqqrvaiaralm 157 (242)
T COG4161 83 NVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYA-----DRYPLHLSGGQQQRVAIARALM 157 (242)
T ss_pred hhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhcccccc-----ccCceecccchhhhHHHHHHHh
Confidence 99999999999999999999976532223557888899999999999999888 5588899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhH
Q 006505 197 HDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDL 268 (643)
Q Consensus 197 ~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 268 (643)
.+|++|++||||++|||+-..++.+++++++. .|.|-+++||..+. ..+.+.+|+.|++|++++.|+.+.
T Consensus 158 mkpqvllfdeptaaldpeitaqvv~iikel~~-tgitqvivthev~v-a~k~as~vvyme~g~ive~g~a~~ 227 (242)
T COG4161 158 MEPQVLLFDEPTAALDPEITAQIVSIIKELAE-TGITQVIVTHEVEV-ARKTASRVVYMENGHIVEQGDASC 227 (242)
T ss_pred cCCcEEeecCcccccCHHHHHHHHHHHHHHHh-cCceEEEEEeehhH-HHhhhhheEeeecCeeEeecchhh
Confidence 99999999999999999999999999999997 59999999999974 778999999999999999998753
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-42 Score=395.09 Aligned_cols=212 Identities=25% Similarity=0.403 Sum_probs=181.9
Q ss_pred hhcccccc-cccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEEEE
Q 006505 46 SKLEEAAD-SDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGYV 121 (643)
Q Consensus 46 ~~~~~~~~-~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~yv 121 (643)
++++|++. .++++++|+|+|++++|||.+||+||||||||||+++|+|++ |++|+|.+||+++.. ..+|+.++||
T Consensus 350 i~~~~vsf~~~~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v 428 (588)
T PRK11174 350 IEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWV 428 (588)
T ss_pred EEEEeeEEeccCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEe
Confidence 56788864 455678999999999999999999999999999999999999 999999999988743 5788999999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhh-------hhhhcCCCcCCCCCHHHHHHHHHHHH
Q 006505 122 TQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHV-------AMARVGDDRVRGISGGERRRVSIGFD 194 (643)
Q Consensus 122 ~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~-------~~~~vg~~~~~~LSGGerqRv~ia~a 194 (643)
+|++.+|+. |++|||.++.. ..+ +++++++++..++++. .||.+|+ ....||||||||++||||
T Consensus 429 ~Q~~~LF~~-TI~eNI~~g~~---~~~----~eei~~al~~a~l~~~i~~lp~G~dT~vge-~G~~LSGGQrQRialARA 499 (588)
T PRK11174 429 GQNPQLPHG-TLRDNVLLGNP---DAS----DEQLQQALENAWVSEFLPLLPQGLDTPIGD-QAAGLSVGQAQRLALARA 499 (588)
T ss_pred cCCCcCCCc-CHHHHhhcCCC---CCC----HHHHHHHHHHhCHHHHHHhccccccccccc-CCCCCCHHHHHHHHHHHH
Confidence 999999997 99999988521 122 2355566666665432 3566754 467899999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 195 VIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 195 L~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
|+++|++|+||||||+||+.++..+.+.|+++.+ ++|+|++||+++ ..+.+|+|++|++|++++.|+.+++.+
T Consensus 500 ll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvIiItHrl~--~i~~aD~Iivl~~G~i~e~G~~~eL~~ 572 (588)
T PRK11174 500 LLQPCQLLLLDEPTASLDAHSEQLVMQALNAASR--RQTTLMVTHQLE--DLAQWDQIWVMQDGQIVQQGDYAELSQ 572 (588)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhC--CCEEEEEecChH--HHHhCCEEEEEeCCeEeecCCHHHHHh
Confidence 9999999999999999999999999999999863 899999999995 467899999999999999999998753
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-42 Score=385.75 Aligned_cols=223 Identities=26% Similarity=0.373 Sum_probs=190.0
Q ss_pred hhhcccccccccc----cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCC-----CccEEEECCCcCCc---h
Q 006505 45 LSKLEEAADSDGV----RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTP-----QSGSTFVNGSPIDK---A 112 (643)
Q Consensus 45 ~~~~~~~~~~~~~----~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~-----~~G~I~~~g~~~~~---~ 112 (643)
++++++++++|+. +.+|+|+||++++||+++|+||||||||||+|+|+|+++| ++|+|.++|+++.. .
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 5778999999963 5799999999999999999999999999999999999986 69999999998743 1
Q ss_pred ---hhc-ccEEEEccCCC--CCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHH
Q 006505 113 ---QFR-KVSGYVTQRDT--LFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGER 186 (643)
Q Consensus 113 ---~~~-~~i~yv~Q~~~--l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGer 186 (643)
..+ +.+||++|++. +++.+|++|++.+........+..+..++++++++.+||.+..+. .++++.+||||||
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~--~~~~~~~LSgGe~ 162 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKR--LTDYPHQLSGGER 162 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHH--HhhCCcccCHHHH
Confidence 123 57999999974 677789999988654332223445566789999999999752110 1446789999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecCh
Q 006505 187 RRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTV 266 (643)
Q Consensus 187 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 266 (643)
|||+||+||+.+|++|+|||||+|||+.++..+.++|++++++.|+|||++|||++ .+.++||+|++|++|++++.|++
T Consensus 163 qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~dri~~l~~G~i~~~g~~ 241 (529)
T PRK15134 163 QRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLS-IVRKLADRVAVMQNGRCVEQNRA 241 (529)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHH-HHHHhcCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999999999999998756899999999997 47889999999999999999998
Q ss_pred hHHH
Q 006505 267 DLLS 270 (643)
Q Consensus 267 ~~~~ 270 (643)
+++.
T Consensus 242 ~~~~ 245 (529)
T PRK15134 242 ATLF 245 (529)
T ss_pred HHHh
Confidence 8764
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-42 Score=385.83 Aligned_cols=221 Identities=27% Similarity=0.408 Sum_probs=191.2
Q ss_pred hhhhhccccccccc-----------ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc
Q 006505 43 EELSKLEEAADSDG-----------VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK 111 (643)
Q Consensus 43 ~~~~~~~~~~~~~~-----------~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~ 111 (643)
.+++++++++++|+ .+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+ ++|+|+++|+++..
T Consensus 273 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~ 351 (529)
T PRK15134 273 SPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHN 351 (529)
T ss_pred CCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccc
Confidence 34688999999985 3679999999999999999999999999999999999985 89999999987642
Q ss_pred ---h---hhcccEEEEccCC--CCCCCCCHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCh-hhhhhhcCCCcCCCC
Q 006505 112 ---A---QFRKVSGYVTQRD--TLFPLLTVEETLMFSAKLRLR-LPQAQLRARVKSLVKELGLE-HVAMARVGDDRVRGI 181 (643)
Q Consensus 112 ---~---~~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~~~~~-~~~~~~~~~v~~~l~~lgl~-~~~~~~vg~~~~~~L 181 (643)
. .+++.++|++|++ .+++.+||.||+.++...+.. .+.++.+++++++++.+|+. +.. ++++.+|
T Consensus 352 ~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~L 426 (529)
T PRK15134 352 LNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETR-----HRYPAEF 426 (529)
T ss_pred cchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHH-----hcCCccC
Confidence 1 2356799999996 478889999999987543211 23344556789999999996 345 4477899
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEE
Q 006505 182 SGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVL 261 (643)
Q Consensus 182 SGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv 261 (643)
||||||||+||++|+.+|++|||||||+|||+.++..+++.|++++++.|+|||++|||++ .+.++||++++|++|+++
T Consensus 427 SgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~-~~~~~~d~i~~l~~G~i~ 505 (529)
T PRK15134 427 SGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLH-VVRALCHQVIVLRQGEVV 505 (529)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhcCeEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999998756899999999997 488899999999999999
Q ss_pred EecChhHHH
Q 006505 262 HHGTVDLLS 270 (643)
Q Consensus 262 ~~G~~~~~~ 270 (643)
..|+++++.
T Consensus 506 ~~~~~~~~~ 514 (529)
T PRK15134 506 EQGDCERVF 514 (529)
T ss_pred EEcCHHHHh
Confidence 999988764
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-42 Score=344.46 Aligned_cols=207 Identities=31% Similarity=0.537 Sum_probs=175.5
Q ss_pred hhcccccccccc--cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEEE
Q 006505 46 SKLEEAADSDGV--RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGY 120 (643)
Q Consensus 46 ~~~~~~~~~~~~--~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~y 120 (643)
+++++++++|+. +.+++|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ...++.++|
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (220)
T cd03245 3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGY 82 (220)
T ss_pred EEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEE
Confidence 347788888865 579999999999999999999999999999999999999999999999987632 335678999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcC------CCcCCCCCHHHHHHHHHHHH
Q 006505 121 VTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVG------DDRVRGISGGERRRVSIGFD 194 (643)
Q Consensus 121 v~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg------~~~~~~LSGGerqRv~ia~a 194 (643)
++|++.+++ .|+.||+.+.... .. ++++.++++.+++.+..++... ...+.+||||||||++||++
T Consensus 83 ~~q~~~~~~-~tv~e~l~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~a 154 (220)
T cd03245 83 VPQDVTLFY-GTLRDNITLGAPL---AD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARA 154 (220)
T ss_pred eCCCCcccc-chHHHHhhcCCCC---CC----HHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHH
Confidence 999998887 5999999764211 11 2356678888999876655321 22457999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEec
Q 006505 195 VIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHG 264 (643)
Q Consensus 195 L~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 264 (643)
|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+ +++|++++|++|++++.|
T Consensus 155 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~-~~-~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 155 LLNDPPILLLDEPTSAMDMNSEERLKERLRQLLG--DKTLIIITHRPS-LL-DLVDRIIVMDSGRIVADG 220 (220)
T ss_pred HhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC--CCEEEEEeCCHH-HH-HhCCEEEEEeCCeEeecC
Confidence 9999999999999999999999999999999875 489999999997 34 799999999999998754
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=396.33 Aligned_cols=215 Identities=30% Similarity=0.484 Sum_probs=185.8
Q ss_pred hhhccccccccccc--ceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCC---chhhcccEE
Q 006505 45 LSKLEEAADSDGVR--RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPID---KAQFRKVSG 119 (643)
Q Consensus 45 ~~~~~~~~~~~~~~--~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~---~~~~~~~i~ 119 (643)
-++++|++.+|+.. .+|+|+|++|+|||.+||+|+||||||||+|+|+|+++|.+|+|++||.+++ ...+|+++|
T Consensus 471 ~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig 550 (709)
T COG2274 471 EIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVG 550 (709)
T ss_pred eEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhhee
Confidence 36789999999876 6999999999999999999999999999999999999999999999999874 367899999
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChh-------hhhhhcCCCcCCCCCHHHHHHHHHH
Q 006505 120 YVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEH-------VAMARVGDDRVRGISGGERRRVSIG 192 (643)
Q Consensus 120 yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~-------~~~~~vg~~~~~~LSGGerqRv~ia 192 (643)
||+||+.+|.. |++||+.++. +... .+++.+.++.-|..+ -.++.+| +...+||||||||++||
T Consensus 551 ~V~Q~~~Lf~g-SI~eNi~l~~----p~~~---~e~i~~A~~~ag~~~fI~~lP~gy~t~v~-E~G~~LSGGQrQrlalA 621 (709)
T COG2274 551 YVLQDPFLFSG-SIRENIALGN----PEAT---DEEIIEAAQLAGAHEFIENLPMGYDTPVG-EGGANLSGGQRQRLALA 621 (709)
T ss_pred EEcccchhhcC-cHHHHHhcCC----CCCC---HHHHHHHHHHhCcHHHHHhcccccccccc-cCCCCCCHHHHHHHHHH
Confidence 99999999998 9999998753 2111 223444444444432 2345553 56779999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHHH
Q 006505 193 FDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSVS 272 (643)
Q Consensus 193 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~ 272 (643)
|||+++|+||+||||||+||+.+.+.+.+.|.++.+ |+|+|+++|.++ ..+.||+|++|++|+++.+|+.+|+.+.
T Consensus 622 RaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~--~~T~I~IaHRl~--ti~~adrIiVl~~Gkiv~~gs~~ell~~ 697 (709)
T COG2274 622 RALLSKPKILLLDEATSALDPETEAIILQNLLQILQ--GRTVIIIAHRLS--TIRSADRIIVLDQGKIVEQGSHEELLAQ 697 (709)
T ss_pred HHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhc--CCeEEEEEccch--HhhhccEEEEccCCceeccCCHHHHHHh
Confidence 999999999999999999999999999999999974 899999999986 5799999999999999999999998754
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-42 Score=384.04 Aligned_cols=215 Identities=23% Similarity=0.382 Sum_probs=189.0
Q ss_pred hhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc----hhhcccEEE
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK----AQFRKVSGY 120 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~----~~~~~~i~y 120 (643)
++++++++++|+++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++.. ..+++.++|
T Consensus 4 ~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~ 83 (501)
T PRK11288 4 YLSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAI 83 (501)
T ss_pred eEEEeeeEEEECCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEE
Confidence 5778999999988899999999999999999999999999999999999999999999999988742 234678999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhc-CC-CCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcC
Q 006505 121 VTQRDTLFPLLTVEETLMFSAKLR-LR-LPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHD 198 (643)
Q Consensus 121 v~Q~~~l~~~lTv~E~l~~~~~~~-~~-~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~ 198 (643)
++|++.+++.+||+||+.++.... .. ...++.+++++++++.+|+.+.. ++.+.+|||||||||+||++|+.+
T Consensus 84 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~LSgGq~qrv~laral~~~ 158 (501)
T PRK11288 84 IYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDP-----DTPLKYLSIGQRQMVEIAKALARN 158 (501)
T ss_pred EEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCc-----CCchhhCCHHHHHHHHHHHHHHhC
Confidence 999999999999999999864211 11 13445566789999999997655 446789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecCh
Q 006505 199 PKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTV 266 (643)
Q Consensus 199 p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 266 (643)
|++|||||||+|||+.++..+.+.|++++++ |+|||++|||++ ++.++||++++|++|+++..++.
T Consensus 159 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-g~tiiiitHd~~-~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 159 ARVIAFDEPTSSLSAREIEQLFRVIRELRAE-GRVILYVSHRME-EIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeecCc
Confidence 9999999999999999999999999999864 999999999997 58899999999999999877653
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-42 Score=373.59 Aligned_cols=212 Identities=29% Similarity=0.448 Sum_probs=186.5
Q ss_pred hccccccccccc-ceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCC---chhhcccEEEEc
Q 006505 47 KLEEAADSDGVR-RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPID---KAQFRKVSGYVT 122 (643)
Q Consensus 47 ~~~~~~~~~~~~-~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~---~~~~~~~i~yv~ 122 (643)
++++++..|++. ++++|+|+++++|+.+||+|+||||||||+++|+|+.+|++|+|.+||.+.. ...++++++||+
T Consensus 322 ~~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~ 401 (559)
T COG4988 322 SLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVS 401 (559)
T ss_pred eecceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeC
Confidence 356888888765 8999999999999999999999999999999999999999999999998774 467999999999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhh------hhhcCCCcCCCCCHHHHHHHHHHHHHh
Q 006505 123 QRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVA------MARVGDDRVRGISGGERRRVSIGFDVI 196 (643)
Q Consensus 123 Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~------~~~vg~~~~~~LSGGerqRv~ia~aL~ 196 (643)
|++.+|+. |++||+.++.. ..+ ++.+.+++++.|+.+.. |+.+| +..++|||||+|||++||||+
T Consensus 402 Q~p~lf~g-TireNi~l~~~---~~s----~e~i~~al~~a~l~~~v~~p~GLdt~ig-e~G~~LSgGQ~QRlaLARAll 472 (559)
T COG4988 402 QNPYLFAG-TIRENILLARP---DAS----DEEIIAALDQAGLLEFVPKPDGLDTVIG-EGGAGLSGGQAQRLALARALL 472 (559)
T ss_pred CCCccccc-cHHHHhhccCC---cCC----HHHHHHHHHHhcHHHhhcCCCcccchhc-cCCCCCCHHHHHHHHHHHHhc
Confidence 99999998 99999987531 112 45677788887776544 44453 467889999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 197 HDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 197 ~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
++++++++||||++||.++...+.+.|.++++ ++|+|++||++. ...-+|+|++|++|++++.|.++++.+
T Consensus 473 ~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~--~ktvl~itHrl~--~~~~~D~I~vld~G~l~~~g~~~~L~~ 543 (559)
T COG4988 473 SPASLLLLDEPTAHLDAETEQIILQALQELAK--QKTVLVITHRLE--DAADADRIVVLDNGRLVEQGTHEELSE 543 (559)
T ss_pred CCCCEEEecCCccCCCHhHHHHHHHHHHHHHh--CCeEEEEEcChH--HHhcCCEEEEecCCceeccCCHHHHhh
Confidence 99999999999999999999999999999986 699999999985 467899999999999999999999853
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=337.83 Aligned_cols=190 Identities=35% Similarity=0.545 Sum_probs=164.3
Q ss_pred hhccccccccc----ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCC---CCccEEEECCCcCCc--hhhcc
Q 006505 46 SKLEEAADSDG----VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLT---PQSGSTFVNGSPIDK--AQFRK 116 (643)
Q Consensus 46 ~~~~~~~~~~~----~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~---~~~G~I~~~g~~~~~--~~~~~ 116 (643)
..++|+++.|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ |++|+|.++|+++.. ...++
T Consensus 4 ~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~ 83 (202)
T cd03233 4 LSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPG 83 (202)
T ss_pred EEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcc
Confidence 45677777774 5689999999999999999999999999999999999999 889999999998753 34567
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHh
Q 006505 117 VSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVI 196 (643)
Q Consensus 117 ~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~ 196 (643)
.++|++|++.+++.+||+||+.++.... .++.+..||||||||++||+||+
T Consensus 84 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----------------------------~~~~~~~LS~Ge~qrl~laral~ 134 (202)
T cd03233 84 EIIYVSEEDVHFPTLTVRETLDFALRCK-----------------------------GNEFVRGISGGERKRVSIAEALV 134 (202)
T ss_pred eEEEEecccccCCCCcHHHHHhhhhhhc-----------------------------cccchhhCCHHHHHHHHHHHHHh
Confidence 8999999999999999999998754210 14466799999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEec
Q 006505 197 HDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHG 264 (643)
Q Consensus 197 ~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 264 (643)
.+|++++|||||+|||+.++..+.+.|++++++.+.|+|+++|+...++.+.+|++++|++|++++.|
T Consensus 135 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 135 SRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred hCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 99999999999999999999999999999987556777776655433688999999999999998765
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-42 Score=383.61 Aligned_cols=218 Identities=24% Similarity=0.434 Sum_probs=189.2
Q ss_pred hhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCC--CccEEEECCCcCCch----hhcccEE
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTP--QSGSTFVNGSPIDKA----QFRKVSG 119 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~--~~G~I~~~g~~~~~~----~~~~~i~ 119 (643)
++++|++++|+++++|+|+|+++++||+++|+||||||||||+|+|+|+.+| ++|+|.++|+++... ..++.++
T Consensus 2 l~i~~l~~~~~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 81 (500)
T TIGR02633 2 LEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIV 81 (500)
T ss_pred EEEEeEEEEeCCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEE
Confidence 4678999999888999999999999999999999999999999999999987 799999999887431 2346799
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcC-C--CCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHh
Q 006505 120 YVTQRDTLFPLLTVEETLMFSAKLRL-R--LPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVI 196 (643)
Q Consensus 120 yv~Q~~~l~~~lTv~E~l~~~~~~~~-~--~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~ 196 (643)
||+|++.+++.+||+||+.+...... . ...++.+++++++++.+|+.+..+ ++++++|||||||||+||++|+
T Consensus 82 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----~~~~~~LSgG~~qrv~iA~al~ 157 (500)
T TIGR02633 82 IIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNV----TRPVGDYGGGQQQLVEIAKALN 157 (500)
T ss_pred EEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcc----cCchhhCCHHHHHHHHHHHHHh
Confidence 99999999999999999988654321 1 123445567899999999975431 2357899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHH
Q 006505 197 HDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLL 269 (643)
Q Consensus 197 ~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 269 (643)
.+|++|||||||+|||+.++..+.+.|++++++ |+|||++|||++ ++.++||++++|++|+++..|++++.
T Consensus 158 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviiitHd~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 158 KQARLLILDEPSSSLTEKETEILLDIIRDLKAH-GVACVYISHKLN-EVKAVCDTICVIRDGQHVATKDMSTM 228 (500)
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCcHH-HHHHhCCEEEEEeCCeEeeecCcccC
Confidence 999999999999999999999999999999864 999999999997 58889999999999999999987653
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=335.40 Aligned_cols=182 Identities=41% Similarity=0.709 Sum_probs=163.1
Q ss_pred hhcccccccccc----cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCC--CCCccEEEECCCcCCchhhcccEE
Q 006505 46 SKLEEAADSDGV----RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKL--TPQSGSTFVNGSPIDKAQFRKVSG 119 (643)
Q Consensus 46 ~~~~~~~~~~~~----~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~--~~~~G~I~~~g~~~~~~~~~~~i~ 119 (643)
++++++++.|+. +++|+|+|+++++||+++|+||||||||||+++|+|+. +|++|+|.++|+++. ...++.++
T Consensus 4 l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~-~~~~~~i~ 82 (192)
T cd03232 4 LTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD-KNFQRSTG 82 (192)
T ss_pred EEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH-HHhhhceE
Confidence 467888888864 67999999999999999999999999999999999986 478999999999875 45567899
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCC
Q 006505 120 YVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDP 199 (643)
Q Consensus 120 yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p 199 (643)
|++|++.+++.+|++||+.+...++ .||||||||++||+||+.+|
T Consensus 83 ~~~q~~~~~~~~tv~~~l~~~~~~~-----------------------------------~LSgGe~qrv~la~al~~~p 127 (192)
T cd03232 83 YVEQQDVHSPNLTVREALRFSALLR-----------------------------------GLSVEQRKRLTIGVELAAKP 127 (192)
T ss_pred EecccCccccCCcHHHHHHHHHHHh-----------------------------------cCCHHHhHHHHHHHHHhcCC
Confidence 9999999999999999998643100 79999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeC-CeEEEec
Q 006505 200 KVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLAN-GSVLHHG 264 (643)
Q Consensus 200 ~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~-G~iv~~G 264 (643)
++++|||||+|||+.++..+.+.|++++++ |+|||++||+++.++.+.+|++++|++ |++++.|
T Consensus 128 ~vlllDEP~~~LD~~~~~~l~~~l~~~~~~-~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 128 SILFLDEPTSGLDSQAAYNIVRFLKKLADS-GQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred cEEEEeCCCcCCCHHHHHHHHHHHHHHHHc-CCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 999999999999999999999999999864 899999999997446789999999999 9999865
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-42 Score=345.49 Aligned_cols=213 Identities=33% Similarity=0.479 Sum_probs=176.4
Q ss_pred hhcccccccccc-cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEEEE
Q 006505 46 SKLEEAADSDGV-RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGYV 121 (643)
Q Consensus 46 ~~~~~~~~~~~~-~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~yv 121 (643)
++++|++++|+. +.+++|+|+++++||+++|+|||||||||||++|+|+.+|++|+|.++|.++.. ..+++.++|+
T Consensus 3 l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 82 (229)
T cd03254 3 IEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVV 82 (229)
T ss_pred EEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEe
Confidence 357888888874 579999999999999999999999999999999999999999999999987642 3456789999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhh------cCCCcCCCCCHHHHHHHHHHHHH
Q 006505 122 TQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMAR------VGDDRVRGISGGERRRVSIGFDV 195 (643)
Q Consensus 122 ~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~------vg~~~~~~LSGGerqRv~ia~aL 195 (643)
+|++.+++. |++||+.+.... .. .+++.+.++.+++.+..++. ..+..+..|||||||||+||++|
T Consensus 83 ~q~~~~~~~-tv~~~~~~~~~~---~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al 154 (229)
T cd03254 83 LQDTFLFSG-TIMENIRLGRPN---AT----DEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAM 154 (229)
T ss_pred cCCchhhhh-HHHHHHhccCCC---CC----HHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHH
Confidence 999988886 999999875321 11 12344455555554433221 01345789999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 196 IHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 196 ~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
+.+|++++|||||+|||+.++..+++.|++++ + |+|||++||+++ ++ +.+|++++|++|++++.|+.++..
T Consensus 155 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~-~~-~~~d~i~~l~~g~~~~~~~~~~~~ 225 (229)
T cd03254 155 LRDPKILILDEATSNIDTETEKLIQEALEKLM-K-GRTSIIIAHRLS-TI-KNADKILVLDDGKIIEEGTHDELL 225 (229)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-C-CCEEEEEecCHH-HH-hhCCEEEEEeCCeEEEeCCHHHHH
Confidence 99999999999999999999999999999985 3 899999999997 35 569999999999999999877654
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-42 Score=347.44 Aligned_cols=214 Identities=29% Similarity=0.456 Sum_probs=173.9
Q ss_pred hcccccccccc---cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEEE
Q 006505 47 KLEEAADSDGV---RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGY 120 (643)
Q Consensus 47 ~~~~~~~~~~~---~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~y 120 (643)
+++|++++|+. +++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ...++.++|
T Consensus 2 ~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 81 (238)
T cd03249 2 EFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGL 81 (238)
T ss_pred eEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEE
Confidence 36778888853 469999999999999999999999999999999999999999999999987632 344567999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhh------cCCCcCCCCCHHHHHHHHHHHH
Q 006505 121 VTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMAR------VGDDRVRGISGGERRRVSIGFD 194 (643)
Q Consensus 121 v~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~------vg~~~~~~LSGGerqRv~ia~a 194 (643)
++|++.+++ .||+||+.+....+ ..+ ...+.++..++.+..+.. ..+..+..|||||||||+||++
T Consensus 82 ~~q~~~~~~-~tv~e~l~~~~~~~---~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~a 153 (238)
T cd03249 82 VSQEPVLFD-GTIAENIRYGKPDA---TDE----EVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARA 153 (238)
T ss_pred ECCchhhhh-hhHHHHhhccCCCC---CHH----HHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHH
Confidence 999988887 59999998753211 111 122333444443322111 0144678999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHHH
Q 006505 195 VIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSVS 272 (643)
Q Consensus 195 L~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~ 272 (643)
|+.+|++++|||||+|||+.++..+.+.|++++ + |+|||++||+++ ++ +.||++++|++|++++.|+.+++.+.
T Consensus 154 l~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~-g~~vi~~sh~~~-~~-~~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (238)
T cd03249 154 LLRNPKILLLDEATSALDAESEKLVQEALDRAM-K-GRTTIVIAHRLS-TI-RNADLIAVLQNGQVVEQGTHDELMAQ 227 (238)
T ss_pred HhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCCHH-HH-hhCCEEEEEECCEEEEeCCHHHHhhc
Confidence 999999999999999999999999999999986 4 899999999997 45 48999999999999999998776543
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-41 Score=344.75 Aligned_cols=225 Identities=23% Similarity=0.330 Sum_probs=183.2
Q ss_pred hhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCC--CCCccEEEECCCcCCc---hh-hcccEE
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKL--TPQSGSTFVNGSPIDK---AQ-FRKVSG 119 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~--~~~~G~I~~~g~~~~~---~~-~~~~i~ 119 (643)
++++|++++|+++++|+|+|+++++||+++|+||||||||||+++|+|+. +|++|+|.++|+++.. .. .++.++
T Consensus 2 i~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 81 (248)
T PRK09580 2 LSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIF 81 (248)
T ss_pred eEEEEEEEEeCCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceE
Confidence 45789999998889999999999999999999999999999999999995 6899999999987743 12 235699
Q ss_pred EEccCCCCCCCCCHHHHHHHHHH-hc-CCC----CHHHHHHHHHHHHHHcCCh-hhhhhhcCCCcCC-CCCHHHHHHHHH
Q 006505 120 YVTQRDTLFPLLTVEETLMFSAK-LR-LRL----PQAQLRARVKSLVKELGLE-HVAMARVGDDRVR-GISGGERRRVSI 191 (643)
Q Consensus 120 yv~Q~~~l~~~lTv~E~l~~~~~-~~-~~~----~~~~~~~~v~~~l~~lgl~-~~~~~~vg~~~~~-~LSGGerqRv~i 191 (643)
|++|++.+++.+|+.+++.+... .+ ... ...+..++++++++.+++. +..+ ..+. .||||||||++|
T Consensus 82 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~~~LS~G~~qrv~l 156 (248)
T PRK09580 82 MAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLT-----RSVNVGFSGGEKKRNDI 156 (248)
T ss_pred EEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcc-----cCCCCCCCHHHHHHHHH
Confidence 99999988888888777654321 11 000 1123356678899999985 3332 2343 799999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhh-cCEEEEEeCCeEEEecChhHHH
Q 006505 192 GFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKM-FNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 192 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~-~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
|+||+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++|||++. +... +|++++|++|++++.|+++.+
T Consensus 157 aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tiii~sH~~~~-~~~~~~d~i~~l~~g~i~~~g~~~~~- 233 (248)
T PRK09580 157 LQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRD-GKRSFIIVTHYQRI-LDYIKPDYVHVLYQGRIVKSGDFTLV- 233 (248)
T ss_pred HHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHH-HHhhhCCEEEEEECCeEEEeCCHHHH-
Confidence 9999999999999999999999999999999999976 48999999999873 6665 899999999999999998854
Q ss_pred HHHHHcCC
Q 006505 271 VSLRMMGL 278 (643)
Q Consensus 271 ~~f~~~g~ 278 (643)
+.++..++
T Consensus 234 ~~~~~~~~ 241 (248)
T PRK09580 234 KQLEEQGY 241 (248)
T ss_pred HHHHhcCC
Confidence 33343333
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-41 Score=355.62 Aligned_cols=222 Identities=26% Similarity=0.405 Sum_probs=187.7
Q ss_pred hhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCC-----CCccEEEECCCcCCc-----hh
Q 006505 44 ELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLT-----PQSGSTFVNGSPIDK-----AQ 113 (643)
Q Consensus 44 ~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~-----~~~G~I~~~g~~~~~-----~~ 113 (643)
.++.++|++++|+++.+|+|+|+++++||+++|+|||||||||||++|+|+.+ |++|+|.++|+++.. ..
T Consensus 44 ~~l~i~nl~~~~~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~ 123 (305)
T PRK14264 44 AKLSVEDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVE 123 (305)
T ss_pred ceEEEEEEEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHH
Confidence 46789999999988899999999999999999999999999999999999986 589999999987642 24
Q ss_pred hcccEEEEccCCCCCCCCCHHHHHHHHHHhcC-----------CC-CHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCC
Q 006505 114 FRKVSGYVTQRDTLFPLLTVEETLMFSAKLRL-----------RL-PQAQLRARVKSLVKELGLEHVAMARVGDDRVRGI 181 (643)
Q Consensus 114 ~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~-----------~~-~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~L 181 (643)
.++.++|++|++.+++. ||+||+.+...... .. ..+..++++.++++.+++.+...... +..+++|
T Consensus 124 ~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~L 201 (305)
T PRK14264 124 LRKRVGMVFQSPNPFPK-SIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRL-DDNALGL 201 (305)
T ss_pred HhhceEEEccCCccccc-cHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHh-cCccccC
Confidence 56789999999988885 99999998654211 01 12233567889999998853222222 5578899
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEE-EEEeCCeE
Q 006505 182 SGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSI-LMLANGSV 260 (643)
Q Consensus 182 SGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v-~~L~~G~i 260 (643)
|||||||++||+||+++|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+++|++ ++|++|++
T Consensus 202 SgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~--~~tiiivtH~~~-~i~~~~d~i~~~l~~G~i 278 (305)
T PRK14264 202 SGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE--EYTVVVVTHNMQ-QAARISDQTAVFLTGGEL 278 (305)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEEcCHH-HHHHhcCEEEEEecCCEE
Confidence 99999999999999999999999999999999999999999999975 489999999997 478899997 57899999
Q ss_pred EEecChhHHH
Q 006505 261 LHHGTVDLLS 270 (643)
Q Consensus 261 v~~G~~~~~~ 270 (643)
++.|+++++.
T Consensus 279 ~~~g~~~~~~ 288 (305)
T PRK14264 279 VEYDDTDKIF 288 (305)
T ss_pred EEeCCHHHHH
Confidence 9999987764
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=386.06 Aligned_cols=215 Identities=31% Similarity=0.496 Sum_probs=184.0
Q ss_pred hhhhccccccccccc---ceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhccc
Q 006505 44 ELSKLEEAADSDGVR---RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKV 117 (643)
Q Consensus 44 ~~~~~~~~~~~~~~~---~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~ 117 (643)
..++.+|+..+|..+ .||+|+|+.|++|+.+||+|||||||||++++|.+++.|++|+|++||.++.. +.+|.+
T Consensus 349 g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~ 428 (1228)
T KOG0055|consen 349 GEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQ 428 (1228)
T ss_pred cceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhh
Confidence 356788998888776 59999999999999999999999999999999999999999999999999854 567899
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc-------CChhhhhhhcCCCcCCCCCHHHHHHHH
Q 006505 118 SGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKEL-------GLEHVAMARVGDDRVRGISGGERRRVS 190 (643)
Q Consensus 118 i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l-------gl~~~~~~~vg~~~~~~LSGGerqRv~ 190 (643)
+|.|.|+|.+|.. |++||+.|+.. ..+.+ ++++..+.. .|.+-.+|.+|++.+ +||||||||++
T Consensus 429 iglV~QePvlF~~-tI~eNI~~G~~---dat~~----~i~~a~k~ana~~fi~~lp~g~~T~vge~g~-qLSGGQKQRIA 499 (1228)
T KOG0055|consen 429 IGLVSQEPVLFAT-TIRENIRYGKP---DATRE----EIEEAAKAANAHDFILKLPDGYDTLVGERGV-QLSGGQKQRIA 499 (1228)
T ss_pred cCeeeechhhhcc-cHHHHHhcCCC---cccHH----HHHHHHHHccHHHHHHhhHHhhcccccCCCC-CCChHHHHHHH
Confidence 9999999998885 99999988631 11222 233333332 244556788876655 49999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 191 IGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 191 ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
|||||+.+|+|||||||||+||+.+...+.+.|.+.++ |+|.|+++|+++. + +.+|+|++|++|++++.|+++|+.
T Consensus 500 IARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~--grTTivVaHRLSt-I-rnaD~I~v~~~G~IvE~G~h~ELi 575 (1228)
T KOG0055|consen 500 IARALVRNPKILLLDEATSALDAESERVVQEALDKASK--GRTTIVVAHRLST-I-RNADKIAVMEEGKIVEQGTHDELI 575 (1228)
T ss_pred HHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhc--CCeEEEEeeehhh-h-hccCEEEEEECCEEEEecCHHHHH
Confidence 99999999999999999999999999999999998864 8999999999973 5 559999999999999999999987
Q ss_pred H
Q 006505 271 V 271 (643)
Q Consensus 271 ~ 271 (643)
+
T Consensus 576 ~ 576 (1228)
T KOG0055|consen 576 A 576 (1228)
T ss_pred h
Confidence 5
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=337.10 Aligned_cols=195 Identities=27% Similarity=0.393 Sum_probs=173.7
Q ss_pred hcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc--hhhcccEEEEccC
Q 006505 47 KLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK--AQFRKVSGYVTQR 124 (643)
Q Consensus 47 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~--~~~~~~i~yv~Q~ 124 (643)
++++++++|+++.+|+|+|+++++||+++|+|+||||||||+++|+|+.+|++|+|.++|+++.. ..+++.++|++|+
T Consensus 2 ~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~ 81 (201)
T cd03231 2 EADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHA 81 (201)
T ss_pred EEEEEEEEeCCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEeccc
Confidence 46788899988899999999999999999999999999999999999999999999999988642 3456789999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 006505 125 DTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLIL 204 (643)
Q Consensus 125 ~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illl 204 (643)
+.+++.+|++||+.+..... ..++++++++.+|+.+..+ ..+..||||||||++||++|+.+|++++|
T Consensus 82 ~~~~~~~tv~e~l~~~~~~~-------~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrl~laral~~~p~llll 149 (201)
T cd03231 82 PGIKTTLSVLENLRFWHADH-------SDEQVEEALARVGLNGFED-----RPVAQLSAGQQRRVALARLLLSGRPLWIL 149 (201)
T ss_pred cccCCCcCHHHHHHhhcccc-------cHHHHHHHHHHcCChhhhc-----CchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999999998753211 2456789999999987664 46789999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEE
Q 006505 205 DEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILML 255 (643)
Q Consensus 205 DEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L 255 (643)
||||+|||+.++..+.+.|++++++ |.|+|++||++. +..+.+|+++++
T Consensus 150 DEPt~~LD~~~~~~l~~~l~~~~~~-g~tiii~sH~~~-~~~~~~~~~~~~ 198 (201)
T cd03231 150 DEPTTALDKAGVARFAEAMAGHCAR-GGMVVLTTHQDL-GLSEAGARELDL 198 (201)
T ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCch-hhhhccceeEec
Confidence 9999999999999999999998764 899999999987 578899999887
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=346.97 Aligned_cols=203 Identities=31% Similarity=0.491 Sum_probs=177.4
Q ss_pred hhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEccC
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQR 124 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~ 124 (643)
++++++++++|+++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|++|+|.++| +..++|++|+
T Consensus 4 ~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~--------~~~i~~v~q~ 75 (251)
T PRK09544 4 LVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG--------KLRIGYVPQK 75 (251)
T ss_pred EEEEeceEEEECCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC--------ccCEEEeccc
Confidence 56789999999888999999999999999999999999999999999999999999999987 2359999999
Q ss_pred CCCCCC--CCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEE
Q 006505 125 DTLFPL--LTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVL 202 (643)
Q Consensus 125 ~~l~~~--lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~il 202 (643)
+.+++. .|+.+++.+.. .. ..+++.++++.+|+.+..++ ++..||||||||++||++|+.+|+++
T Consensus 76 ~~~~~~l~~~~~~~~~~~~----~~----~~~~~~~~l~~~gl~~~~~~-----~~~~LSgGq~qrv~laral~~~p~ll 142 (251)
T PRK09544 76 LYLDTTLPLTVNRFLRLRP----GT----KKEDILPALKRVQAGHLIDA-----PMQKLSGGETQRVLLARALLNRPQLL 142 (251)
T ss_pred cccccccChhHHHHHhccc----cc----cHHHHHHHHHHcCChHHHhC-----ChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 887775 47888765321 11 13457889999999877644 67899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 203 ILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 203 llDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
+|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+.+|++++|+ |+++..|+++++.
T Consensus 143 lLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~-~i~~~~d~i~~l~-~~i~~~g~~~~~~ 208 (251)
T PRK09544 143 VLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLH-LVMAKTDEVLCLN-HHICCSGTPEVVS 208 (251)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEC-CceEeeCCHHHHh
Confidence 9999999999999999999999998755899999999997 5889999999996 4799999988763
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=328.17 Aligned_cols=170 Identities=35% Similarity=0.645 Sum_probs=156.9
Q ss_pred hcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc--hhhcccEEEEccC
Q 006505 47 KLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK--AQFRKVSGYVTQR 124 (643)
Q Consensus 47 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~--~~~~~~i~yv~Q~ 124 (643)
++++++++|+.+++|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ..+++.++|++|+
T Consensus 2 ~~~~l~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~ 81 (173)
T cd03230 2 EVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEE 81 (173)
T ss_pred EEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecC
Confidence 36788888887789999999999999999999999999999999999999999999999988743 3456789999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 006505 125 DTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLIL 204 (643)
Q Consensus 125 ~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illl 204 (643)
+.+++.+|+.||+. ||||||||++||++|+.+|++++|
T Consensus 82 ~~~~~~~tv~~~~~------------------------------------------LS~G~~qrv~laral~~~p~illl 119 (173)
T cd03230 82 PSLYENLTVRENLK------------------------------------------LSGGMKQRLALAQALLHDPELLIL 119 (173)
T ss_pred CccccCCcHHHHhh------------------------------------------cCHHHHHHHHHHHHHHcCCCEEEE
Confidence 99999899999873 999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeE
Q 006505 205 DEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSV 260 (643)
Q Consensus 205 DEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 260 (643)
||||+|||+.++..+.+.|++++++ |.|+|++||+++ ++.+++|++++|++|++
T Consensus 120 DEPt~~LD~~~~~~l~~~l~~~~~~-g~tiii~th~~~-~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 120 DEPTSGLDPESRREFWELLRELKKE-GKTILLSSHILE-EAERLCDRVAILNNGRI 173 (173)
T ss_pred eCCccCCCHHHHHHHHHHHHHHHHC-CCEEEEECCCHH-HHHHhCCEEEEEeCCCC
Confidence 9999999999999999999999875 899999999997 57789999999999974
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=381.21 Aligned_cols=219 Identities=21% Similarity=0.371 Sum_probs=188.0
Q ss_pred hhhhccccccccc---ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCC-CCccEEEECCCcCCc----hhhc
Q 006505 44 ELSKLEEAADSDG---VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLT-PQSGSTFVNGSPIDK----AQFR 115 (643)
Q Consensus 44 ~~~~~~~~~~~~~---~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~-~~~G~I~~~g~~~~~----~~~~ 115 (643)
+++++++++++|+ ++.+|+|+||++++||+++|+||||||||||+|+|+|+.+ |++|+|.++|+++.. ...+
T Consensus 258 ~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~ 337 (506)
T PRK13549 258 VILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIA 337 (506)
T ss_pred ceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHH
Confidence 4678999999883 4679999999999999999999999999999999999998 599999999987642 2245
Q ss_pred ccEEEEccCC---CCCCCCCHHHHHHHHHH--hcC-C-CCHHHHHHHHHHHHHHcCCh-hhhhhhcCCCcCCCCCHHHHH
Q 006505 116 KVSGYVTQRD---TLFPLLTVEETLMFSAK--LRL-R-LPQAQLRARVKSLVKELGLE-HVAMARVGDDRVRGISGGERR 187 (643)
Q Consensus 116 ~~i~yv~Q~~---~l~~~lTv~E~l~~~~~--~~~-~-~~~~~~~~~v~~~l~~lgl~-~~~~~~vg~~~~~~LSGGerq 187 (643)
+.++|++|++ .+++.+||.||+.+... ... . ...++.+++++++++.+++. +.. ++++++|||||||
T Consensus 338 ~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~LSgG~kq 412 (506)
T PRK13549 338 QGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASP-----ELAIARLSGGNQQ 412 (506)
T ss_pred CCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCc-----ccccccCCHHHHH
Confidence 6799999995 47888999999987532 111 1 12334456789999999996 445 4467899999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChh
Q 006505 188 RVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVD 267 (643)
Q Consensus 188 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 267 (643)
||+||++|+.+|++|||||||+|||+.++..+.++|++++++ |+|||++|||++ ++.++||++++|++|+++..|+++
T Consensus 413 rv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tvi~~sHd~~-~~~~~~d~v~~l~~G~i~~~~~~~ 490 (506)
T PRK13549 413 KAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQ-GVAIIVISSELP-EVLGLSDRVLVMHEGKLKGDLINH 490 (506)
T ss_pred HHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHC-CCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEeccc
Confidence 999999999999999999999999999999999999999875 999999999997 588999999999999999999876
Q ss_pred HH
Q 006505 268 LL 269 (643)
Q Consensus 268 ~~ 269 (643)
++
T Consensus 491 ~~ 492 (506)
T PRK13549 491 NL 492 (506)
T ss_pred cC
Confidence 64
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-42 Score=389.98 Aligned_cols=215 Identities=23% Similarity=0.354 Sum_probs=185.9
Q ss_pred hhhcccccccccc--cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEE
Q 006505 45 LSKLEEAADSDGV--RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSG 119 (643)
Q Consensus 45 ~~~~~~~~~~~~~--~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~ 119 (643)
.++++|++.+|++ +++|+|+|+++++||.+||+||||||||||+|+|+|+++|++|+|.+||++++. ..+++.++
T Consensus 341 ~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~ 420 (582)
T PRK11176 341 DIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVA 420 (582)
T ss_pred eEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhce
Confidence 3678899988864 679999999999999999999999999999999999999999999999998753 56788999
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhh-------hhhhcCCCcCCCCCHHHHHHHHHH
Q 006505 120 YVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHV-------AMARVGDDRVRGISGGERRRVSIG 192 (643)
Q Consensus 120 yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~-------~~~~vg~~~~~~LSGGerqRv~ia 192 (643)
||||++.+|+. |++|||.++.. + +..+++++++++..|+.+. .|+.+|+ ....||||||||++||
T Consensus 421 ~v~Q~~~lf~~-Ti~~Ni~~~~~---~---~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~-~g~~LSGGqrQRi~LA 492 (582)
T PRK11176 421 LVSQNVHLFND-TIANNIAYART---E---QYSREQIEEAARMAYAMDFINKMDNGLDTVIGE-NGVLLSGGQRQRIAIA 492 (582)
T ss_pred EEccCceeecc-hHHHHHhcCCC---C---CCCHHHHHHHHHHhCcHHHHHhcccccCceeCC-CCCcCCHHHHHHHHHH
Confidence 99999999986 99999986421 1 1123456677777776543 3666764 4578999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 193 FDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 193 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
|||+++|++++||||||+||+.++..+++.|+++.+ ++|+|++||+++ ..+.||+|++|++|++++.|+++++.+
T Consensus 493 Rall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~--~~tvI~VtHr~~--~~~~~D~Ii~l~~g~i~e~g~~~~l~~ 567 (582)
T PRK11176 493 RALLRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHRLS--TIEKADEILVVEDGEIVERGTHAELLA 567 (582)
T ss_pred HHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC--CCEEEEEecchH--HHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999999999999999999999999999853 799999999985 568899999999999999999988753
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=394.37 Aligned_cols=211 Identities=30% Similarity=0.431 Sum_probs=184.6
Q ss_pred hhhccccccccc--ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEE
Q 006505 45 LSKLEEAADSDG--VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSG 119 (643)
Q Consensus 45 ~~~~~~~~~~~~--~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~ 119 (643)
.++++|++.+|+ ++++|+|+|+++++||.+||+||||||||||+|+|+|+++|++|+|++||+++.. ..+|+.+|
T Consensus 451 ~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~ 530 (686)
T TIGR03797 451 AIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLG 530 (686)
T ss_pred eEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccE
Confidence 367899999984 4679999999999999999999999999999999999999999999999998753 57899999
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhh-------hhhcCCCcCCCCCHHHHHHHHHH
Q 006505 120 YVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVA-------MARVGDDRVRGISGGERRRVSIG 192 (643)
Q Consensus 120 yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~-------~~~vg~~~~~~LSGGerqRv~ia 192 (643)
||+||+.+|+. |++|||.++.. .+ ++++.++++..|+.+.. ||.+|+ ....||||||||++||
T Consensus 531 ~v~Q~~~lf~g-TI~eNi~~~~~----~~----~e~i~~al~~a~l~~~i~~lp~G~dt~ige-~G~~LSGGQrQRialA 600 (686)
T TIGR03797 531 VVLQNGRLMSG-SIFENIAGGAP----LT----LDEAWEAARMAGLAEDIRAMPMGMHTVISE-GGGTLSGGQRQRLLIA 600 (686)
T ss_pred EEccCCccCcc-cHHHHHhcCCC----CC----HHHHHHHHHHcCcHHHHHhccccccccccC-CCCCCCHHHHHHHHHH
Confidence 99999999987 99999987521 12 34567778888876543 555653 4578999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 193 FDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 193 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
|||+++|++|+||||||+||+.+..++.+.|+++ ++|+|++||+++ ..+.+|+|++|++|++++.|+++++.+
T Consensus 601 RAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~----~~T~IiItHr~~--~i~~~D~Iivl~~G~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 601 RALVRKPRILLFDEATSALDNRTQAIVSESLERL----KVTRIVIAHRLS--TIRNADRIYVLDAGRVVQQGTYDELMA 673 (686)
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh----CCeEEEEecChH--HHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999875 579999999985 457799999999999999999998753
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-41 Score=335.93 Aligned_cols=198 Identities=28% Similarity=0.440 Sum_probs=172.6
Q ss_pred hhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEccCC
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRD 125 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~ 125 (643)
+++++++++|+++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.....++.++|++|++
T Consensus 3 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 82 (207)
T PRK13539 3 LEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHRN 82 (207)
T ss_pred EEEEeEEEEECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCCC
Confidence 56789999998888999999999999999999999999999999999999999999999998764323677899999998
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q 006505 126 TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILD 205 (643)
Q Consensus 126 ~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlD 205 (643)
.+++.+||+||+.+....+. .. .+++.++++.+|+.+.. +.+++.||||||||++||++|+.+|++++||
T Consensus 83 ~~~~~~tv~~~l~~~~~~~~-~~----~~~~~~~l~~~~l~~~~-----~~~~~~LS~G~~qrl~la~al~~~p~llllD 152 (207)
T PRK13539 83 AMKPALTVAENLEFWAAFLG-GE----ELDIAAALEAVGLAPLA-----HLPFGYLSAGQKRRVALARLLVSNRPIWILD 152 (207)
T ss_pred cCCCCCcHHHHHHHHHHhcC-Cc----HHHHHHHHHHcCCHHHH-----cCChhhcCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 88888999999987654321 11 23578999999998755 4466799999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeC
Q 006505 206 EPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLAN 257 (643)
Q Consensus 206 EPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 257 (643)
|||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+ |+++.+..
T Consensus 153 EPt~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH~~~-~~~~--~~~~~~~~ 200 (207)
T PRK13539 153 EPTAALDAAAVALFAELIRAHLAQ-GGIVIAATHIPL-GLPG--ARELDLGP 200 (207)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCch-hhcc--CcEEeecC
Confidence 999999999999999999999775 999999999997 3554 98887743
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-41 Score=386.64 Aligned_cols=211 Identities=22% Similarity=0.370 Sum_probs=186.1
Q ss_pred hhcccccccccc-cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCC---chhhcccEEEE
Q 006505 46 SKLEEAADSDGV-RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPID---KAQFRKVSGYV 121 (643)
Q Consensus 46 ~~~~~~~~~~~~-~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~---~~~~~~~i~yv 121 (643)
+++++++.+|++ +++|+|+|+++++||.+||+|+||||||||+|+|+|+++|++|+|.+||.+++ ...++++++||
T Consensus 341 i~~~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v 420 (592)
T PRK10790 341 IDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMV 420 (592)
T ss_pred EEEEEEEEEeCCCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEE
Confidence 668888888854 67999999999999999999999999999999999999999999999999874 35788999999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhh-------hhhcCCCcCCCCCHHHHHHHHHHHH
Q 006505 122 TQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVA-------MARVGDDRVRGISGGERRRVSIGFD 194 (643)
Q Consensus 122 ~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~-------~~~vg~~~~~~LSGGerqRv~ia~a 194 (643)
||++.+|++ |++|||.++. +.+ +++++++++.+|+.+.. |+.+|+ ....||||||||++||||
T Consensus 421 ~Q~~~lF~~-Ti~~NI~~~~----~~~----d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e-~g~~LSGGqrQRialARa 490 (592)
T PRK10790 421 QQDPVVLAD-TFLANVTLGR----DIS----EEQVWQALETVQLAELARSLPDGLYTPLGE-QGNNLSVGQKQLLALARV 490 (592)
T ss_pred ccCCccccc-hHHHHHHhCC----CCC----HHHHHHHHHHcCcHHHHHhccccccccccC-CCCCCCHHHHHHHHHHHH
Confidence 999999998 9999998852 112 34577888888876543 455543 557899999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 195 VIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 195 L~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
|+++|++++||||||+||+.+..++.+.|+++++ ++|+|++||+++ ..+.+|+|++|++|+++..|+++++.
T Consensus 491 Ll~~~~illlDEpts~LD~~t~~~i~~~l~~~~~--~~tvIivtHr~~--~l~~~D~ii~l~~G~i~~~G~~~~L~ 562 (592)
T PRK10790 491 LVQTPQILILDEATANIDSGTEQAIQQALAAVRE--HTTLVVIAHRLS--TIVEADTILVLHRGQAVEQGTHQQLL 562 (592)
T ss_pred HHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEecchH--HHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999999999864 699999999985 46789999999999999999999885
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-41 Score=328.58 Aligned_cols=172 Identities=36% Similarity=0.611 Sum_probs=157.3
Q ss_pred hcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc-----hhhcccEEEE
Q 006505 47 KLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-----AQFRKVSGYV 121 (643)
Q Consensus 47 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~-----~~~~~~i~yv 121 (643)
++++++++|+++++++|+|+++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. ...++.++|+
T Consensus 2 ~~~~l~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~ 81 (178)
T cd03229 2 ELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMV 81 (178)
T ss_pred EEEEEEEEECCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEE
Confidence 46788888888889999999999999999999999999999999999999999999999987642 3456789999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCE
Q 006505 122 TQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKV 201 (643)
Q Consensus 122 ~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~i 201 (643)
+|++.+++.+|++||+.+. ||||||||++||++|+.+|++
T Consensus 82 ~q~~~~~~~~t~~~~l~~~----------------------------------------lS~G~~qr~~la~al~~~p~l 121 (178)
T cd03229 82 FQDFALFPHLTVLENIALG----------------------------------------LSGGQQQRVALARALAMDPDV 121 (178)
T ss_pred ecCCccCCCCCHHHheeec----------------------------------------CCHHHHHHHHHHHHHHCCCCE
Confidence 9999999889999987532 999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCe
Q 006505 202 LILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGS 259 (643)
Q Consensus 202 lllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 259 (643)
++|||||+|||+.++..+.+.|++++++.|+|+|++||+++ ++.+++|++++|++|+
T Consensus 122 lilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 122 LLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLD-EAARLADRVVVLRDGK 178 (178)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCCC
Confidence 99999999999999999999999998754799999999997 4777999999999885
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-42 Score=339.83 Aligned_cols=196 Identities=30% Similarity=0.511 Sum_probs=178.9
Q ss_pred ceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc-------hhhcccEEEEccCCCCCCCCCHHH
Q 006505 63 GVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-------AQFRKVSGYVTQRDTLFPLLTVEE 135 (643)
Q Consensus 63 ~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~-------~~~~~~i~yv~Q~~~l~~~lTv~E 135 (643)
++++..+.-.++||-|+||||||||+|+|+|+.+|++|.|.+||+-+.. ...++++|||+||-.|||++||+.
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrg 95 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRG 95 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEec
Confidence 6888888867999999999999999999999999999999999986522 245788999999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Q 006505 136 TLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTS 215 (643)
Q Consensus 136 ~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~ 215 (643)
||.|+.... .....+++.+.||++|.. +++|..|||||||||+|+|||++.|++|++|||.+.||-..
T Consensus 96 NL~YG~~~~-------~~~~fd~iv~lLGI~hLL-----~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~R 163 (352)
T COG4148 96 NLRYGMWKS-------MRAQFDQLVALLGIEHLL-----DRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPR 163 (352)
T ss_pred chhhhhccc-------chHhHHHHHHHhCcHHHH-----hhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccch
Confidence 999986421 345678899999999998 45889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 216 ALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 216 ~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
+.+++-.|++++++.+..|+.+||.++ |+.+++|+|++|++|++...|+.+++..
T Consensus 164 K~EilpylERL~~e~~IPIlYVSHS~~-Ev~RLAd~vV~le~GkV~A~g~~e~v~~ 218 (352)
T COG4148 164 KREILPYLERLRDEINIPILYVSHSLD-EVLRLADRVVVLENGKVKASGPLEEVWG 218 (352)
T ss_pred hhHHHHHHHHHHHhcCCCEEEEecCHH-HHHhhhheEEEecCCeEEecCcHHHHhc
Confidence 999999999999999999999999997 7999999999999999999999998753
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-41 Score=341.12 Aligned_cols=212 Identities=30% Similarity=0.450 Sum_probs=173.6
Q ss_pred hccccccccc-ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEEEEc
Q 006505 47 KLEEAADSDG-VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGYVT 122 (643)
Q Consensus 47 ~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~yv~ 122 (643)
++++++++|+ .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ..+++.++|++
T Consensus 2 ~~~~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~ 81 (236)
T cd03253 2 EFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVP 81 (236)
T ss_pred EEEEEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEEC
Confidence 3677888885 5679999999999999999999999999999999999999999999999987642 34567799999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhh------cCCCcCCCCCHHHHHHHHHHHHHh
Q 006505 123 QRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMAR------VGDDRVRGISGGERRRVSIGFDVI 196 (643)
Q Consensus 123 Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~------vg~~~~~~LSGGerqRv~ia~aL~ 196 (643)
|++.+++ .|++||+.+... . .+.+ .+.+.++..++.+..+.. .-++.++.||||||||++||++|+
T Consensus 82 q~~~~~~-~tv~~nl~~~~~-~--~~~~----~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~ 153 (236)
T cd03253 82 QDTVLFN-DTIGYNIRYGRP-D--ATDE----EVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAIL 153 (236)
T ss_pred CCChhhc-chHHHHHhhcCC-C--CCHH----HHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHh
Confidence 9998886 599999987532 1 1211 133334444443322111 013457899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 197 HDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 197 ~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
.+|++++|||||+|||+.++..+.+.|+++++ |+|||++||+++. + ..+|++++|++|+++..|+.++..
T Consensus 154 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sh~~~~-~-~~~d~~~~l~~g~i~~~~~~~~~~ 223 (236)
T cd03253 154 KNPPILLLDEATSALDTHTEREIQAALRDVSK--GRTTIVIAHRLST-I-VNADKIIVLKDGRIVERGTHEELL 223 (236)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC--CCEEEEEcCCHHH-H-HhCCEEEEEECCEEEeeCCHHHHh
Confidence 99999999999999999999999999999864 8999999999974 5 459999999999999999887654
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-41 Score=378.78 Aligned_cols=214 Identities=22% Similarity=0.409 Sum_probs=183.7
Q ss_pred hhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc----hhhcccEE
Q 006505 44 ELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK----AQFRKVSG 119 (643)
Q Consensus 44 ~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~----~~~~~~i~ 119 (643)
++++++++++.++ .+|+|+|+++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++.. ...++.++
T Consensus 264 ~~l~~~~l~~~~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~ 341 (510)
T PRK09700 264 TVFEVRNVTSRDR--KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMA 341 (510)
T ss_pred cEEEEeCccccCC--CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcE
Confidence 4678899988753 48999999999999999999999999999999999999999999999987643 23456799
Q ss_pred EEccC---CCCCCCCCHHHHHHHHHHhc---C----CC-CHHHHHHHHHHHHHHcCCh-hhhhhhcCCCcCCCCCHHHHH
Q 006505 120 YVTQR---DTLFPLLTVEETLMFSAKLR---L----RL-PQAQLRARVKSLVKELGLE-HVAMARVGDDRVRGISGGERR 187 (643)
Q Consensus 120 yv~Q~---~~l~~~lTv~E~l~~~~~~~---~----~~-~~~~~~~~v~~~l~~lgl~-~~~~~~vg~~~~~~LSGGerq 187 (643)
|++|+ ..+++.+||.||+.+....+ . +. ..+..+++++++++.+|+. +.. ++++.+|||||||
T Consensus 342 ~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~LSgGq~q 416 (510)
T PRK09700 342 YITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSV-----NQNITELSGGNQQ 416 (510)
T ss_pred EccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCc-----cCccccCChHHHH
Confidence 99998 46889999999998753211 0 11 2233345688999999996 555 4467899999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecCh
Q 006505 188 RVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTV 266 (643)
Q Consensus 188 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 266 (643)
||+||++|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++|||++ .+.++||++++|++|+++..++.
T Consensus 417 rv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tvi~vsHd~~-~~~~~~d~i~~l~~G~i~~~~~~ 493 (510)
T PRK09700 417 KVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADD-GKVILMVSSELP-EIITVCDRIAVFCEGRLTQILTN 493 (510)
T ss_pred HHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEcCCHH-HHHhhCCEEEEEECCEEEEEecC
Confidence 999999999999999999999999999999999999999874 999999999997 58899999999999999988865
|
|
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-41 Score=328.83 Aligned_cols=179 Identities=36% Similarity=0.583 Sum_probs=155.6
Q ss_pred cccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc-----hhhcccEEEEccCCC--CC
Q 006505 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-----AQFRKVSGYVTQRDT--LF 128 (643)
Q Consensus 56 ~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~-----~~~~~~i~yv~Q~~~--l~ 128 (643)
+++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ..+++.++|++|++. ++
T Consensus 3 ~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 82 (190)
T TIGR01166 3 GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLF 82 (190)
T ss_pred CccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccc
Confidence 45679999999999999999999999999999999999999999999999988631 234677999999973 45
Q ss_pred CCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q 006505 129 PLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPT 208 (643)
Q Consensus 129 ~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPt 208 (643)
..||+||+.+..... +.+.++.+++++++++.+|+.+..+ +.+.+||||||||++||+||+.+|++++|||||
T Consensus 83 -~~tv~~nl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv~laral~~~p~llllDEPt 155 (190)
T TIGR01166 83 -AADVDQDVAFGPLNL-GLSEAEVERRVREALTAVGASGLRE-----RPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPT 155 (190)
T ss_pred -cccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCchhhhh-----CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 469999999865432 2234455667899999999987664 467899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q 006505 209 SGLDSTSALQIIDMLKVMAETRGRTVILSIHQPG 242 (643)
Q Consensus 209 sgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~ 242 (643)
+|||+.++..+.+.|++++++ |+|||++||+++
T Consensus 156 ~~LD~~~~~~~~~~l~~~~~~-~~tili~sH~~~ 188 (190)
T TIGR01166 156 AGLDPAGREQMLAILRRLRAE-GMTVVISTHDVD 188 (190)
T ss_pred ccCCHHHHHHHHHHHHHHHHc-CCEEEEEeeccc
Confidence 999999999999999999874 999999999986
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=363.20 Aligned_cols=213 Identities=35% Similarity=0.518 Sum_probs=187.7
Q ss_pred hhhcccccccccccc-eeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEEE
Q 006505 45 LSKLEEAADSDGVRR-VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGY 120 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~-iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~y 120 (643)
.++.+|++..|++++ ||+++||+|++||-+||+|+|||||||++|+|.+..+ .+|+|++||+++.. +.+|+.|||
T Consensus 351 ~I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~ 429 (591)
T KOG0057|consen 351 SIEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGV 429 (591)
T ss_pred cEEEEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeE
Confidence 477899999999888 9999999999999999999999999999999999999 89999999998743 678999999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhh-------hhhcCCCcCCCCCHHHHHHHHHHH
Q 006505 121 VTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVA-------MARVGDDRVRGISGGERRRVSIGF 193 (643)
Q Consensus 121 v~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~-------~~~vg~~~~~~LSGGerqRv~ia~ 193 (643)
||||..||.+ ||.+|+.++.. ..+ .++|-++.++.|+.+.. +|.+| +....|||||||||++||
T Consensus 430 VPQd~~LFnd-TIl~NI~YGn~---sas----~eeV~e~~k~a~~hd~i~~l~~GY~T~VG-erG~~LSGGekQrvslaR 500 (591)
T KOG0057|consen 430 VPQDSVLFND-TILYNIKYGNP---SAS----DEEVVEACKRAGLHDVISRLPDGYQTLVG-ERGLMLSGGEKQRVSLAR 500 (591)
T ss_pred eCCcccccch-hHHHHhhcCCC---CcC----HHHHHHHHHHcCcHHHHHhccccchhhHh-hcccccccchHHHHHHHH
Confidence 9999999987 99999998631 112 24566777777776543 34454 456789999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 194 DVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 194 aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
|++.+|+|+++|||||.||+.+..++++.+.+.. .|+|+|++.|+.+ ...-||+|++|++|++...|+.+++..
T Consensus 501 a~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~--~~rTvI~IvH~l~--ll~~~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 501 AFLKDAPILLLDEATSALDSETEREILDMIMDVM--SGRTVIMIVHRLD--LLKDFDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred HHhcCCCeEEecCcccccchhhHHHHHHHHHHhc--CCCeEEEEEecch--hHhcCCEEEEEECCeeEEeccHHHHhh
Confidence 9999999999999999999999999999999954 4899999999985 578899999999999999999999875
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-41 Score=330.74 Aligned_cols=194 Identities=28% Similarity=0.391 Sum_probs=168.4
Q ss_pred hcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc--hhhcccEEEEccC
Q 006505 47 KLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK--AQFRKVSGYVTQR 124 (643)
Q Consensus 47 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~--~~~~~~i~yv~Q~ 124 (643)
++++++++|+++.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ..+++.++|++|+
T Consensus 2 ~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~ 81 (198)
T TIGR01189 2 AARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHL 81 (198)
T ss_pred EEEEEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEeccC
Confidence 46788889988899999999999999999999999999999999999999999999999987643 2355789999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 006505 125 DTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLIL 204 (643)
Q Consensus 125 ~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illl 204 (643)
+.+++.+|+.||+.+....+. . + ++++.++++.+|+.+..+ .++..||||||||++||++++.+|++++|
T Consensus 82 ~~~~~~~tv~~~l~~~~~~~~--~-~--~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv~la~al~~~p~llll 151 (198)
T TIGR01189 82 PGLKPELSALENLHFWAAIHG--G-A--QRTIEDALAAVGLTGFED-----LPAAQLSAGQQRRLALARLWLSRAPLWIL 151 (198)
T ss_pred cccccCCcHHHHHHHHHHHcC--C-c--HHHHHHHHHHcCCHHHhc-----CChhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 988998999999988654331 1 1 346788999999987664 46679999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEE
Q 006505 205 DEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILM 254 (643)
Q Consensus 205 DEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~ 254 (643)
||||+|||+.++..+.+.|++++++ |.|||++||++.. + .+++++.
T Consensus 152 DEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~~sH~~~~-~--~~~~~~~ 197 (198)
T TIGR01189 152 DEPTTALDKAGVALLAGLLRAHLAR-GGIVLLTTHQDLG-L--VEARELR 197 (198)
T ss_pred eCCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEEEccccc-c--cceEEee
Confidence 9999999999999999999999764 8999999999863 2 4566654
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-41 Score=332.18 Aligned_cols=187 Identities=26% Similarity=0.411 Sum_probs=163.4
Q ss_pred hcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcC--CCCCccEEEECCCcCCc---hh-hcccEEE
Q 006505 47 KLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGK--LTPQSGSTFVNGSPIDK---AQ-FRKVSGY 120 (643)
Q Consensus 47 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~--~~~~~G~I~~~g~~~~~---~~-~~~~i~y 120 (643)
.+++++++|+++.+++|+|+++++||+++|+||||||||||+|+|+|. .+|++|+|.+||+++.. .. .++.++|
T Consensus 2 ~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 81 (200)
T cd03217 2 EIKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFL 81 (200)
T ss_pred eEEEEEEEeCCEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEE
Confidence 467888889888899999999999999999999999999999999999 47899999999998753 12 2446999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCC
Q 006505 121 VTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPK 200 (643)
Q Consensus 121 v~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~ 200 (643)
++|++.+++..|+++++. ...+.||||||||++||++|+.+|+
T Consensus 82 v~q~~~~~~~~~~~~~l~-------------------------------------~~~~~LS~G~~qrv~laral~~~p~ 124 (200)
T cd03217 82 AFQYPPEIPGVKNADFLR-------------------------------------YVNEGFSGGEKKRNEILQLLLLEPD 124 (200)
T ss_pred eecChhhccCccHHHHHh-------------------------------------hccccCCHHHHHHHHHHHHHhcCCC
Confidence 999999999888887760 0124799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHh-hcCEEEEEeCCeEEEecChhHHHHHH
Q 006505 201 VLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVK-MFNSILMLANGSVLHHGTVDLLSVSL 273 (643)
Q Consensus 201 illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~-~~D~v~~L~~G~iv~~G~~~~~~~~f 273 (643)
+++|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.+ ++|++++|++|++++.|+.+ +.+.+
T Consensus 125 illlDEPt~~LD~~~~~~l~~~L~~~~~~-~~tiii~sh~~~-~~~~~~~d~i~~l~~G~i~~~~~~~-~~~~~ 195 (200)
T cd03217 125 LAILDEPDSGLDIDALRLVAEVINKLREE-GKSVLIITHYQR-LLDYIKPDRVHVLYDGRIVKSGDKE-LALEI 195 (200)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHH-HHHHhhCCEEEEEECCEEEEEccHH-HHhhh
Confidence 99999999999999999999999999864 899999999997 4666 79999999999999999544 55444
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=375.26 Aligned_cols=217 Identities=29% Similarity=0.518 Sum_probs=187.7
Q ss_pred hhhhccccccccccc---ceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhccc
Q 006505 44 ELSKLEEAADSDGVR---RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKV 117 (643)
Q Consensus 44 ~~~~~~~~~~~~~~~---~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~ 117 (643)
..++.+|++..|..+ +||+|+||+|+|||++||+||||+||||+.++|-.++.|++|+|.+||+|+.+ ..+|++
T Consensus 464 G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~ 543 (716)
T KOG0058|consen 464 GVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRK 543 (716)
T ss_pred ceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHH
Confidence 346778888888765 59999999999999999999999999999999999999999999999999854 568999
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHH-----HHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHH
Q 006505 118 SGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRAR-----VKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIG 192 (643)
Q Consensus 118 i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~-----v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia 192 (643)
||+|.|+|.||.. |++|||.|+.. ..+.++..+. +.+.+. ++.+-.||.|| ++...||||||||++||
T Consensus 544 Ig~V~QEPvLFs~-sI~eNI~YG~~---~~t~e~i~~AAk~ANah~FI~--~~p~gY~T~VG-EkG~qLSGGQKQRIAIA 616 (716)
T KOG0058|consen 544 IGLVGQEPVLFSG-SIRENIAYGLD---NATDEEIEAAAKMANAHEFIT--NFPDGYNTVVG-EKGSQLSGGQKQRIAIA 616 (716)
T ss_pred eeeeeccceeecc-cHHHHHhcCCC---CCCHHHHHHHHHHhChHHHHH--hCccccccccC-CccccccchHHHHHHHH
Confidence 9999999999998 99999999864 2233333221 223333 34556788886 46679999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 193 FDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 193 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
|||++||+||||||.||+||+++...+.+.|.++.+ ++|||++.|.++ ..+.+|+|+++++|++++.|+.+|+.+
T Consensus 617 RALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~--~rTVlvIAHRLS--TV~~Ad~Ivvi~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 617 RALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ--GRTVLVIAHRLS--TVRHADQIVVIDKGRVVEMGTHDELLS 691 (716)
T ss_pred HHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc--CCeEEEEehhhh--HhhhccEEEEEcCCeEEecccHHHHhh
Confidence 999999999999999999999999999999999875 699999999986 468999999999999999999998864
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-41 Score=336.59 Aligned_cols=204 Identities=28% Similarity=0.421 Sum_probs=171.5
Q ss_pred hhcccccccccc-------cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEEC--CC--cCCc---
Q 006505 46 SKLEEAADSDGV-------RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVN--GS--PIDK--- 111 (643)
Q Consensus 46 ~~~~~~~~~~~~-------~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~--g~--~~~~--- 111 (643)
++++|++++|+. +.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++ |. ++..
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 457888888852 479999999999999999999999999999999999999999999998 43 3321
Q ss_pred h---hh-cccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHH
Q 006505 112 A---QF-RKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERR 187 (643)
Q Consensus 112 ~---~~-~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerq 187 (643)
. .. ++.++|++|++.+++.+||+|++.+..... ....++..+++.++++.+|+.+... +..+.+|||||||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~----~~~~~~LS~G~~q 156 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER-GVPREAARARARELLARLNIPERLW----HLPPATFSGGEQQ 156 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCchhhh----hCCcccCCHHHHH
Confidence 1 12 356999999999999999999998865432 2233445567889999999975321 3467899999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEe
Q 006505 188 RVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLA 256 (643)
Q Consensus 188 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 256 (643)
|++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.+++|+++.+.
T Consensus 157 rl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vsH~~~-~~~~~~d~i~~~~ 223 (224)
T TIGR02324 157 RVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKAR-GAALIGIFHDEE-VRELVADRVMDVT 223 (224)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcceeEecC
Confidence 999999999999999999999999999999999999999764 899999999976 4677999998763
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-41 Score=363.83 Aligned_cols=216 Identities=30% Similarity=0.491 Sum_probs=195.8
Q ss_pred hhhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc----hhhcccE
Q 006505 43 EELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK----AQFRKVS 118 (643)
Q Consensus 43 ~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~----~~~~~~i 118 (643)
.++++++|++|+|+..++|+||||++.+||++||+|.||||||||+|+|+|.++|++|+|.+||++... +....-|
T Consensus 6 ~~ll~~~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI 85 (500)
T COG1129 6 PPLLELRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGI 85 (500)
T ss_pred cceeeeecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCc
Confidence 346789999999999999999999999999999999999999999999999999999999999998743 3345679
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHH
Q 006505 119 GYVTQRDTLFPLLTVEETLMFSAKLRLR---LPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDV 195 (643)
Q Consensus 119 ~yv~Q~~~l~~~lTv~E~l~~~~~~~~~---~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL 195 (643)
+.|.|+..+.|+|||.|||.++...+.+ ...+..++++.++|+.+|+.... +..+.+||+||||.|.||+||
T Consensus 86 ~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~-----~~~v~~LsiaqrQ~VeIArAl 160 (500)
T COG1129 86 ATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDP-----DTLVGDLSIAQRQMVEIARAL 160 (500)
T ss_pred EEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCCh-----hhhhhhCCHHHHHHHHHHHHH
Confidence 9999999999999999999887655432 26677888999999999986334 446679999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecC
Q 006505 196 IHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGT 265 (643)
Q Consensus 196 ~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 265 (643)
..++++++|||||+.|+......+.+.+++++++ |.+||++||.++ |++++||||.||.||+.+..++
T Consensus 161 ~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~-Gv~ii~ISHrl~-Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 161 SFDARVLILDEPTAALTVKETERLFDLIRRLKAQ-GVAIIYISHRLD-EVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEcCcHH-HHHHhcCEEEEEeCCEEeeecc
Confidence 9999999999999999999999999999999875 999999999997 7999999999999999998888
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-41 Score=348.05 Aligned_cols=212 Identities=24% Similarity=0.351 Sum_probs=180.3
Q ss_pred hhcccccccc--cccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEEE
Q 006505 46 SKLEEAADSD--GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGY 120 (643)
Q Consensus 46 ~~~~~~~~~~--~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~y 120 (643)
++++|++++| +.+.+|+|+|++|++||+++|+||||||||||+++|+|+.+ .+|+|+++|.++.. ..+++.++|
T Consensus 3 i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~~ 81 (275)
T cd03289 3 MTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFGV 81 (275)
T ss_pred EEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEEE
Confidence 3578888888 45679999999999999999999999999999999999997 78999999988743 456788999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCC------CcCCCCCHHHHHHHHHHHH
Q 006505 121 VTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGD------DRVRGISGGERRRVSIGFD 194 (643)
Q Consensus 121 v~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~------~~~~~LSGGerqRv~ia~a 194 (643)
+||++.+|+. |++||+.... ..+ .+++.+.++.+||.+..++..+. +....||||||||++||||
T Consensus 82 v~q~~~lf~~-tv~~nl~~~~----~~~----~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRa 152 (275)
T cd03289 82 IPQKVFIFSG-TFRKNLDPYG----KWS----DEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARS 152 (275)
T ss_pred ECCCcccchh-hHHHHhhhcc----CCC----HHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHH
Confidence 9999999986 9999996321 112 23567788899998766543321 1234599999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 195 VIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 195 L~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
|+.+|++++|||||++||+.+...+.+.|+++. .++|||+++|+++ .+. .+|+|++|++|++++.|+++++..
T Consensus 153 ll~~p~illlDEpts~LD~~~~~~l~~~l~~~~--~~~tii~isH~~~-~i~-~~dri~vl~~G~i~~~g~~~~l~~ 225 (275)
T cd03289 153 VLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF--ADCTVILSEHRIE-AML-ECQRFLVIEENKVRQYDSIQKLLN 225 (275)
T ss_pred HhcCCCEEEEECccccCCHHHHHHHHHHHHHhc--CCCEEEEEECCHH-HHH-hCCEEEEecCCeEeecCCHHHHhh
Confidence 999999999999999999999999999999874 3899999999996 354 599999999999999999998864
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=364.30 Aligned_cols=214 Identities=31% Similarity=0.479 Sum_probs=190.0
Q ss_pred hhhcccccccccccc--eeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCC---chhhcccEE
Q 006505 45 LSKLEEAADSDGVRR--VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPID---KAQFRKVSG 119 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~--iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~---~~~~~~~i~ 119 (643)
.++++|++.+|.+++ +|+|+|+++++||.+||+|+||||||||+++|+|-++|++|+|.+||.++. ++.+++.++
T Consensus 336 ~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~ 415 (573)
T COG4987 336 ALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETIS 415 (573)
T ss_pred eeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHh
Confidence 578999999998765 999999999999999999999999999999999999999999999999874 345788999
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhh-------hcCCCcCCCCCHHHHHHHHHH
Q 006505 120 YVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMA-------RVGDDRVRGISGGERRRVSIG 192 (643)
Q Consensus 120 yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~-------~vg~~~~~~LSGGerqRv~ia 192 (643)
+++|...+|.+ |+++||.++. +. ..++.+.++++++||++.... .+ ++..+.||||||||++||
T Consensus 416 vl~Qr~hlF~~-Tlr~NL~lA~----~~---AsDEel~~aL~qvgL~~l~~~~p~gl~t~l-ge~G~~LSGGE~rRLAlA 486 (573)
T COG4987 416 VLTQRVHLFSG-TLRDNLRLAN----PD---ASDEELWAALQQVGLEKLLESAPDGLNTWL-GEGGRRLSGGERRRLALA 486 (573)
T ss_pred hhccchHHHHH-HHHHHHhhcC----CC---CCHHHHHHHHHHcCHHHHHHhChhhhhchh-ccCCCcCCchHHHHHHHH
Confidence 99999999997 9999998753 21 123567788999999876533 34 456789999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 193 FDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 193 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
|+|++|.++++|||||.|||+.+..++++.|.+.++ |+|+|++||+... .+.||+|++|++|+++++|.++++..
T Consensus 487 R~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~--~kTll~vTHrL~~--le~~drIivl~~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 487 RALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE--GKTLLMVTHRLRG--LERMDRIIVLDNGKIIEEGTHAELLA 561 (573)
T ss_pred HHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc--CCeEEEEeccccc--HhhcCEEEEEECCeeeecCCHHhhhc
Confidence 999999999999999999999999999999999874 8999999999973 58899999999999999999998864
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-41 Score=383.27 Aligned_cols=213 Identities=33% Similarity=0.498 Sum_probs=184.4
Q ss_pred hhccccccccc-ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEEEE
Q 006505 46 SKLEEAADSDG-VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGYV 121 (643)
Q Consensus 46 ~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~yv 121 (643)
++.+|++.+|+ ++++|+|+|++++|||.+||+||||||||||+|+|+|+++|++|+|.+||+++.. ..+|+.++||
T Consensus 329 I~f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V 408 (567)
T COG1132 329 IEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIV 408 (567)
T ss_pred EEEEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEE
Confidence 67899999999 6899999999999999999999999999999999999999999999999988753 6789999999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC-------hhhhhhhcCCCcCCCCCHHHHHHHHHHHH
Q 006505 122 TQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGL-------EHVAMARVGDDRVRGISGGERRRVSIGFD 194 (643)
Q Consensus 122 ~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl-------~~~~~~~vg~~~~~~LSGGerqRv~ia~a 194 (643)
+||+.+|.. |++||+.++.. ..++++ +.+.++..++ .+-.||.+| +....||||||||++||||
T Consensus 409 ~Qd~~LF~~-TI~~NI~~g~~---~at~ee----i~~a~k~a~~~d~I~~lp~g~dt~vg-e~G~~LSgGQrQrlaiARa 479 (567)
T COG1132 409 SQDPLLFSG-TIRENIALGRP---DATDEE----IEEALKLANAHEFIANLPDGYDTIVG-ERGVNLSGGQRQRLAIARA 479 (567)
T ss_pred cccceeecc-cHHHHHhcCCC---CCCHHH----HHHHHHHhChHHHHHhCcccccceec-CCCccCCHHHHHHHHHHHH
Confidence 999999995 99999998632 123333 3333333332 234577786 6677899999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 195 VIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 195 L~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
++++|++|+||||||+||+.+...+.+.++++.+ |+|+|+++|.++. + +.+|+|++|++|++++.|+++++..
T Consensus 480 ll~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~--~rT~iiIaHRlst-i-~~aD~IiVl~~G~i~e~G~h~eLl~ 552 (567)
T COG1132 480 LLRNPPILILDEATSALDTETEALIQDALKKLLK--GRTTLIIAHRLST-I-KNADRIIVLDNGRIVERGTHEELLA 552 (567)
T ss_pred HhcCCCEEEEeccccccCHHhHHHHHHHHHHHhc--CCEEEEEeccHhH-H-HhCCEEEEEECCEEEEecCHHHHHH
Confidence 9999999999999999999999999999998873 6899999999963 5 4599999999999999999999875
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-41 Score=375.96 Aligned_cols=210 Identities=26% Similarity=0.353 Sum_probs=183.4
Q ss_pred hhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEEEE
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGYV 121 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~yv 121 (643)
+++++|++++|+++.+|+|+|+++++||+++|+||||||||||||+|+|+.+|++|+|.++|.++.. ...++.++|+
T Consensus 3 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~ 82 (490)
T PRK10938 3 SLQISQGTFRLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDE 82 (490)
T ss_pred eEEEEeEEEEcCCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhcee
Confidence 4678999999988889999999999999999999999999999999999999999999999976532 2345669999
Q ss_pred ccCCCC--C-C-----CCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHH
Q 006505 122 TQRDTL--F-P-----LLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGF 193 (643)
Q Consensus 122 ~Q~~~l--~-~-----~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~ 193 (643)
+|++.. + + .+||+|++.+. .+.+++++++++.+|+++.. ++++.+|||||||||+||+
T Consensus 83 ~q~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~~~~l~~~~-----~~~~~~LSgG~~qrv~la~ 148 (490)
T PRK10938 83 WQRNNTDMLSPGEDDTGRTTAEIIQDE---------VKDPARCEQLAQQFGITALL-----DRRFKYLSTGETRKTLLCQ 148 (490)
T ss_pred ccCcchhhcccchhhccccHHHhcccc---------hhHHHHHHHHHHHcCCHhhh-----hCCcccCCHHHHHHHHHHH
Confidence 998642 1 1 47888887532 12345788999999998766 4467899999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 194 DVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 194 aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.+.||++++|++|+++..|++++..
T Consensus 149 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-g~tvii~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~~ 223 (490)
T PRK10938 149 ALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQS-GITLVLVLNRFD-EIPDFVQFAGVLADCTLAETGEREEIL 223 (490)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHhhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999875 999999999997 588999999999999999999988753
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-41 Score=382.95 Aligned_cols=214 Identities=33% Similarity=0.552 Sum_probs=187.5
Q ss_pred hhhcccccccccc--cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEE
Q 006505 45 LSKLEEAADSDGV--RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSG 119 (643)
Q Consensus 45 ~~~~~~~~~~~~~--~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~ 119 (643)
.++++|++.+|++ +++|+|+|++++|||.+||+||||||||||+|+|+|+++|++|+|++||+++.. ..+|+.++
T Consensus 338 ~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 417 (574)
T PRK11160 338 SLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAIS 417 (574)
T ss_pred eEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhhee
Confidence 4678999999854 579999999999999999999999999999999999999999999999998753 56788999
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhh------hhhcCCCcCCCCCHHHHHHHHHHH
Q 006505 120 YVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVA------MARVGDDRVRGISGGERRRVSIGF 193 (643)
Q Consensus 120 yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~------~~~vg~~~~~~LSGGerqRv~ia~ 193 (643)
||+|++.+|+. |++||+.++.. +..++++.++++..++++.. ||.+|+ ....||||||||++|||
T Consensus 418 ~v~Q~~~lf~~-ti~~Ni~~~~~-------~~~~~~i~~al~~~~l~~~i~~p~GldT~vge-~g~~LSgGqrqRialAR 488 (574)
T PRK11160 418 VVSQRVHLFSA-TLRDNLLLAAP-------NASDEALIEVLQQVGLEKLLEDDKGLNAWLGE-GGRQLSGGEQRRLGIAR 488 (574)
T ss_pred EEcccchhhcc-cHHHHhhcCCC-------ccCHHHHHHHHHHcCCHHHHcCccccCchhcC-CCCCCCHHHHHHHHHHH
Confidence 99999999986 99999987531 11235678888999987653 455643 46789999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 194 DVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 194 aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
||+++|++++|||||++||+.++..+.+.|+++. .++|+|+++|+++. .+.+|+|++|++|++++.|+.+++.+
T Consensus 489 all~~~~ililDE~ts~lD~~t~~~i~~~l~~~~--~~~tviiitHr~~~--~~~~d~i~~l~~G~i~~~g~~~~l~~ 562 (574)
T PRK11160 489 ALLHDAPLLLLDEPTEGLDAETERQILELLAEHA--QNKTVLMITHRLTG--LEQFDRICVMDNGQIIEQGTHQELLA 562 (574)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecChhH--HHhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 9999999999999999999999999999999986 38999999999963 46799999999999999999988753
|
|
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=313.82 Aligned_cols=203 Identities=29% Similarity=0.502 Sum_probs=182.0
Q ss_pred ccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEEEEccCC
Q 006505 49 EEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGYVTQRD 125 (643)
Q Consensus 49 ~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~yv~Q~~ 125 (643)
.++-..-+...+|+++|+++.+||..+|.||||||||||+|+++.+.+|++|++++.|++++. +.+|++++|+.|.+
T Consensus 7 kq~~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~p 86 (223)
T COG4619 7 KQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTP 86 (223)
T ss_pred HHHHhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCc
Confidence 344445567889999999999999999999999999999999999999999999999999853 67999999999999
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q 006505 126 TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILD 205 (643)
Q Consensus 126 ~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlD 205 (643)
.||+. ||++|+.|..++|...+ .++...++|+.+++.+.. .++.+..||||||||++|+|.|...|+||+||
T Consensus 87 aLfg~-tVeDNlifP~~~r~rr~---dr~aa~~llar~~l~~~~----L~k~it~lSGGE~QriAliR~Lq~~P~ILLLD 158 (223)
T COG4619 87 ALFGD-TVEDNLIFPWQIRNRRP---DRAAALDLLARFALPDSI----LTKNITELSGGEKQRIALIRNLQFMPKILLLD 158 (223)
T ss_pred ccccc-chhhccccchHHhccCC---ChHHHHHHHHHcCCchhh----hcchhhhccchHHHHHHHHHHhhcCCceEEec
Confidence 99998 99999999988875433 456778899999997643 25577899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeE
Q 006505 206 EPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSV 260 (643)
Q Consensus 206 EPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 260 (643)
||||+||+.++..|-++|.++.+++++.++.+|||++ +..+++|+++-+..|++
T Consensus 159 E~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~d-qa~rha~k~itl~~G~~ 212 (223)
T COG4619 159 EITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKD-QAIRHADKVITLQPGHA 212 (223)
T ss_pred CchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChH-HHhhhhheEEEeccCcc
Confidence 9999999999999999999998667999999999997 57899999999999876
|
|
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-41 Score=326.52 Aligned_cols=172 Identities=28% Similarity=0.507 Sum_probs=155.8
Q ss_pred hhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc----hhhcccEEE
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK----AQFRKVSGY 120 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~----~~~~~~i~y 120 (643)
++++++++++| +|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ...++.++|
T Consensus 4 ~l~~~~l~~~~----~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (182)
T cd03215 4 VLEVRGLSVKG----AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAY 79 (182)
T ss_pred EEEEeccEEEe----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEE
Confidence 46678888887 9999999999999999999999999999999999999999999999988743 234678999
Q ss_pred EccCC---CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhc
Q 006505 121 VTQRD---TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIH 197 (643)
Q Consensus 121 v~Q~~---~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~ 197 (643)
++|++ .+++.+|++||+.+... ||||||||++||+||+.
T Consensus 80 ~~q~~~~~~~~~~~t~~e~l~~~~~--------------------------------------LS~G~~qrl~la~al~~ 121 (182)
T cd03215 80 VPEDRKREGLVLDLSVAENIALSSL--------------------------------------LSGGNQQKVVLARWLAR 121 (182)
T ss_pred ecCCcccCcccCCCcHHHHHHHHhh--------------------------------------cCHHHHHHHHHHHHHcc
Confidence 99984 57888999999976421 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeE
Q 006505 198 DPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSV 260 (643)
Q Consensus 198 ~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 260 (643)
+|++++|||||+|||+.++..+.+.|++++++ |+|+|++||+++ ++.+++|++++|++|++
T Consensus 122 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~~tiii~sh~~~-~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 122 DPRVLILDEPTRGVDVGAKAEIYRLIRELADA-GKAVLLISSELD-ELLGLCDRILVMYEGRI 182 (182)
T ss_pred CCCEEEECCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHH-HHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999999764 899999999997 58899999999999974
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-41 Score=336.37 Aligned_cols=207 Identities=25% Similarity=0.350 Sum_probs=174.1
Q ss_pred hhcccccccccc--cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEEE
Q 006505 46 SKLEEAADSDGV--RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGY 120 (643)
Q Consensus 46 ~~~~~~~~~~~~--~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~y 120 (643)
+++++++++|+. +.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.. ..+++.++|
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (221)
T cd03244 3 IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISI 82 (221)
T ss_pred EEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEE
Confidence 357788888853 579999999999999999999999999999999999999999999999988642 346778999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhh------cCCCcCCCCCHHHHHHHHHHHH
Q 006505 121 VTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMAR------VGDDRVRGISGGERRRVSIGFD 194 (643)
Q Consensus 121 v~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~------vg~~~~~~LSGGerqRv~ia~a 194 (643)
++|++.+++ .|++||+.+... .. .+++.+.++.+++.+..++. ..++.+..||||||||++||++
T Consensus 83 ~~q~~~l~~-~tv~enl~~~~~----~~----~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~lara 153 (221)
T cd03244 83 IPQDPVLFS-GTIRSNLDPFGE----YS----DEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARA 153 (221)
T ss_pred ECCCCcccc-chHHHHhCcCCC----CC----HHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHH
Confidence 999998877 499999964321 11 23466677777776554321 1134778999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecC
Q 006505 195 VIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGT 265 (643)
Q Consensus 195 L~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 265 (643)
|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||+++ ++. .+|++++|++|++++.|+
T Consensus 154 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~~-~~~-~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 154 LLRKSKILVLDEATASVDPETDALIQKTIREAFK--DCTVLTIAHRLD-TII-DSDRILVLDKGRVVEFDS 220 (221)
T ss_pred HhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC--CCEEEEEeCCHH-HHh-hCCEEEEEECCeEEecCC
Confidence 9999999999999999999999999999999863 689999999997 354 599999999999998876
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=330.12 Aligned_cols=194 Identities=25% Similarity=0.367 Sum_probs=169.3
Q ss_pred hhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc--hhhcccEEEEcc
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK--AQFRKVSGYVTQ 123 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~--~~~~~~i~yv~Q 123 (643)
+++++++++|+++++|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|+++|+++.. ..+++.++|++|
T Consensus 2 l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q 81 (200)
T PRK13540 2 LDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGH 81 (200)
T ss_pred EEEEEEEEEeCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEecc
Confidence 467899999988899999999999999999999999999999999999999999999999998743 346778999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEE
Q 006505 124 RDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLI 203 (643)
Q Consensus 124 ~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~ill 203 (643)
+..+++.+||+||+.+..... .. ..++.++++.+++.+..+ .++..||||||||++||++++.+|++++
T Consensus 82 ~~~~~~~~tv~~~~~~~~~~~----~~--~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~~rv~laral~~~p~~li 150 (200)
T PRK13540 82 RSGINPYLTLRENCLYDIHFS----PG--AVGITELCRLFSLEHLID-----YPCGLLSSGQKRQVALLRLWMSKAKLWL 150 (200)
T ss_pred ccccCcCCCHHHHHHHHHhcC----cc--hHHHHHHHHHcCCchhhh-----CChhhcCHHHHHHHHHHHHHhcCCCEEE
Confidence 998888899999998864321 11 246889999999976553 3567999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEE
Q 006505 204 LDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSIL 253 (643)
Q Consensus 204 lDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~ 253 (643)
|||||+|||+.++..+.+.|++++++ |.|||++||++.. .+.+|...
T Consensus 151 lDEP~~~LD~~~~~~l~~~l~~~~~~-~~tiii~sh~~~~--~~~~d~~~ 197 (200)
T PRK13540 151 LDEPLVALDELSLLTIITKIQEHRAK-GGAVLLTSHQDLP--LNKADYEE 197 (200)
T ss_pred EeCCCcccCHHHHHHHHHHHHHHHHc-CCEEEEEeCCchh--ccccchhh
Confidence 99999999999999999999998764 9999999999863 46677544
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-41 Score=374.93 Aligned_cols=218 Identities=23% Similarity=0.402 Sum_probs=186.6
Q ss_pred hhhhcccccccc---cccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCC-CccEEEECCCcCCc----hhhc
Q 006505 44 ELSKLEEAADSD---GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTP-QSGSTFVNGSPIDK----AQFR 115 (643)
Q Consensus 44 ~~~~~~~~~~~~---~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~-~~G~I~~~g~~~~~----~~~~ 115 (643)
++++++|++++| +++.+|+|+||++++||+++|+||||||||||||+|+|+.+| ++|+|.++|+++.. ...+
T Consensus 256 ~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~ 335 (500)
T TIGR02633 256 VILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIR 335 (500)
T ss_pred ceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHh
Confidence 467899999888 356799999999999999999999999999999999999985 89999999988742 2346
Q ss_pred ccEEEEccCC---CCCCCCCHHHHHHHHHH--hcC--CCCHHHHHHHHHHHHHHcCChh-hhhhhcCCCcCCCCCHHHHH
Q 006505 116 KVSGYVTQRD---TLFPLLTVEETLMFSAK--LRL--RLPQAQLRARVKSLVKELGLEH-VAMARVGDDRVRGISGGERR 187 (643)
Q Consensus 116 ~~i~yv~Q~~---~l~~~lTv~E~l~~~~~--~~~--~~~~~~~~~~v~~~l~~lgl~~-~~~~~vg~~~~~~LSGGerq 187 (643)
+.++|++|+. .+++.+||+||+.++.. ... .....+.+++++++++.+++.+ .. +++++.|||||||
T Consensus 336 ~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~LSgGqkq 410 (500)
T TIGR02633 336 AGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASP-----FLPIGRLSGGNQQ 410 (500)
T ss_pred CCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCc-----cCccccCCHHHHH
Confidence 7799999995 58899999999987532 110 1123344567899999999963 34 4467899999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChh
Q 006505 188 RVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVD 267 (643)
Q Consensus 188 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 267 (643)
||+||++|+.+|++|||||||+|||+.++..+++.|++++++ |.|||++|||++ ++.++||++++|++|+++..++.+
T Consensus 411 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviivsHd~~-~~~~~~d~v~~l~~G~i~~~~~~~ 488 (500)
T TIGR02633 411 KAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQE-GVAIIVVSSELA-EVLGLSDRVLVIGEGKLKGDFVNH 488 (500)
T ss_pred HHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhC-CCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEEccc
Confidence 999999999999999999999999999999999999999875 999999999997 588999999999999999887654
Q ss_pred H
Q 006505 268 L 268 (643)
Q Consensus 268 ~ 268 (643)
+
T Consensus 489 ~ 489 (500)
T TIGR02633 489 A 489 (500)
T ss_pred c
Confidence 3
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-41 Score=392.85 Aligned_cols=212 Identities=29% Similarity=0.444 Sum_probs=183.3
Q ss_pred hhhcccccccccc--cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCC---chhhcccEE
Q 006505 45 LSKLEEAADSDGV--RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPID---KAQFRKVSG 119 (643)
Q Consensus 45 ~~~~~~~~~~~~~--~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~---~~~~~~~i~ 119 (643)
.++++|++.+|+. +++|+|+|+++++||.+||+||||||||||+|+|+|+++|++|+|.+||.++. ...+|+.++
T Consensus 477 ~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~ 556 (710)
T TIGR03796 477 YVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVA 556 (710)
T ss_pred eEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhhee
Confidence 3678999999864 67999999999999999999999999999999999999999999999999874 356899999
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhh-------hhhcCCCcCCCCCHHHHHHHHHH
Q 006505 120 YVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVA-------MARVGDDRVRGISGGERRRVSIG 192 (643)
Q Consensus 120 yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~-------~~~vg~~~~~~LSGGerqRv~ia 192 (643)
||+|++.+|+. |++|||.++. ...+ ++++.++++..|+.+.. |+.+|+ ....||||||||++||
T Consensus 557 ~v~Q~~~lf~g-Ti~eNi~l~~---~~~~----~~~i~~al~~~~l~~~i~~lp~gl~t~i~e-~G~~LSGGQrQRiaLA 627 (710)
T TIGR03796 557 MVDQDIFLFEG-TVRDNLTLWD---PTIP----DADLVRACKDAAIHDVITSRPGGYDAELAE-GGANLSGGQRQRLEIA 627 (710)
T ss_pred EEecCChhhhc-cHHHHhhCCC---CCCC----HHHHHHHHHHhCCHHHHHhCcCcccceecc-CCCCCCHHHHHHHHHH
Confidence 99999999986 9999998642 1112 34566677777765433 455653 4678999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 193 FDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 193 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
|||+++|++|+||||||+||+.+..++.+.|++ .++|+|++||+++ ..+.+|+|++|++|++++.|+++++.+
T Consensus 628 Rall~~p~iliLDEptS~LD~~te~~i~~~l~~----~~~T~IiitHrl~--~i~~~D~Iivl~~G~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 628 RALVRNPSILILDEATSALDPETEKIIDDNLRR----RGCTCIIVAHRLS--TIRDCDEIIVLERGKVVQRGTHEELWA 700 (710)
T ss_pred HHHhhCCCEEEEECccccCCHHHHHHHHHHHHh----cCCEEEEEecCHH--HHHhCCEEEEEeCCEEEEecCHHHHHH
Confidence 999999999999999999999999999999975 3899999999986 457799999999999999999998864
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-41 Score=339.23 Aligned_cols=205 Identities=30% Similarity=0.501 Sum_probs=172.7
Q ss_pred hhhhhcccccccccc---cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcc
Q 006505 43 EELSKLEEAADSDGV---RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRK 116 (643)
Q Consensus 43 ~~~~~~~~~~~~~~~---~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~ 116 (643)
.+++++++++++|++ +.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ...++
T Consensus 9 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 88 (226)
T cd03248 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS 88 (226)
T ss_pred CceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHh
Confidence 346788999999864 469999999999999999999999999999999999999999999999987642 34567
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHH-----HHHHHHHHHHHc--CChhhhhhhcCCCcCCCCCHHHHHHH
Q 006505 117 VSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQ-----LRARVKSLVKEL--GLEHVAMARVGDDRVRGISGGERRRV 189 (643)
Q Consensus 117 ~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~-----~~~~v~~~l~~l--gl~~~~~~~vg~~~~~~LSGGerqRv 189 (643)
.++|++|++.+++ .||+||+.+..... ...+ ....++++++.+ |+++.. +..++.|||||||||
T Consensus 89 ~i~~~~q~~~l~~-~tv~~nl~~~~~~~---~~~~~~~~~~~~~~~~~l~~l~~gl~~~~-----~~~~~~LSgG~~qrv 159 (226)
T cd03248 89 KVSLVGQEPVLFA-RSLQDNIAYGLQSC---SFECVKEAAQKAHAHSFISELASGYDTEV-----GEKGSQLSGGQKQRV 159 (226)
T ss_pred hEEEEecccHHHh-hhHHHHhccccCCC---CHHHHHHHHHHcCcHHHHHhccccccchh-----hcCCCcCCHHHHHHH
Confidence 7999999998887 59999998754311 1111 112356788888 676554 446789999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeE
Q 006505 190 SIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSV 260 (643)
Q Consensus 190 ~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 260 (643)
+||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++ +.+|++++|++|++
T Consensus 160 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~~-~~-~~~d~i~~l~~g~i 226 (226)
T cd03248 160 AIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE--RRTVLVIAHRLS-TV-ERADQILVLDGGRI 226 (226)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC--CCEEEEEECCHH-HH-HhCCEEEEecCCcC
Confidence 999999999999999999999999999999999999864 689999999997 46 45999999999874
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=324.94 Aligned_cols=176 Identities=36% Similarity=0.659 Sum_probs=156.3
Q ss_pred cccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEEEEccC
Q 006505 48 LEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGYVTQR 124 (643)
Q Consensus 48 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~yv~Q~ 124 (643)
+++++++|+++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ..+++.++|++|
T Consensus 2 ~~~l~~~~~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q- 80 (180)
T cd03214 2 VENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQ- 80 (180)
T ss_pred eeEEEEEECCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHH-
Confidence 5678888888889999999999999999999999999999999999999999999999988743 234556888888
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 006505 125 DTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLIL 204 (643)
Q Consensus 125 ~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illl 204 (643)
+++.+|+.+.. ++.++.||||||||++|||+|+.+|++++|
T Consensus 81 ----------------------------------~l~~~gl~~~~-----~~~~~~LS~G~~qrl~laral~~~p~llll 121 (180)
T cd03214 81 ----------------------------------ALELLGLAHLA-----DRPFNELSGGERQRVLLARALAQEPPILLL 121 (180)
T ss_pred ----------------------------------HHHHcCCHhHh-----cCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 56677776554 335689999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEec
Q 006505 205 DEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHG 264 (643)
Q Consensus 205 DEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 264 (643)
||||+|||+.++..+.+.|++++++.|+|+|++||+++ ++.+++|++++|++|++++.|
T Consensus 122 DEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 122 DEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLN-LAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred eCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999997654899999999997 477999999999999998654
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-41 Score=389.53 Aligned_cols=215 Identities=30% Similarity=0.507 Sum_probs=186.4
Q ss_pred hhhcccccccccc--cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEE
Q 006505 45 LSKLEEAADSDGV--RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSG 119 (643)
Q Consensus 45 ~~~~~~~~~~~~~--~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~ 119 (643)
.++++|++.+|++ +++|+|+|+++++||.+||+||||||||||+|+|+|+++|++|+|.+||.++.. ..+|+.++
T Consensus 463 ~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~ 542 (694)
T TIGR03375 463 EIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIG 542 (694)
T ss_pred eEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccE
Confidence 3678999999963 579999999999999999999999999999999999999999999999998753 57889999
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhh-------hhhhcCCCcCCCCCHHHHHHHHHH
Q 006505 120 YVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHV-------AMARVGDDRVRGISGGERRRVSIG 192 (643)
Q Consensus 120 yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~-------~~~~vg~~~~~~LSGGerqRv~ia 192 (643)
||+|++.+|+. |++|||.++.. ..+ ++++.++++..++.+. .||.+|+ ....||||||||++||
T Consensus 543 ~v~Q~~~lf~~-TI~eNi~~~~~---~~~----~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e-~G~~LSgGQrQRlalA 613 (694)
T TIGR03375 543 YVPQDPRLFYG-TLRDNIALGAP---YAD----DEEILRAAELAGVTEFVRRHPDGLDMQIGE-RGRSLSGGQRQAVALA 613 (694)
T ss_pred EECCChhhhhh-hHHHHHhCCCC---CCC----HHHHHHHHHHcChHHHHHhCcccccceecC-CCCCCCHHHHHHHHHH
Confidence 99999999987 99999986421 112 3456666777766543 3566654 4678999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHHH
Q 006505 193 FDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSVS 272 (643)
Q Consensus 193 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~ 272 (643)
|||+++|++++||||||+||+.+..++.+.|+++.+ ++|+|++||+++ ..+.||+|++|++|++++.|+++++.+.
T Consensus 614 Rall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~iiItHrl~--~~~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 614 RALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA--GKTLVLVTHRTS--LLDLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCEEEEEecCHH--HHHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 999999999999999999999999999999999863 799999999986 4688999999999999999999998654
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-41 Score=389.76 Aligned_cols=214 Identities=27% Similarity=0.439 Sum_probs=184.7
Q ss_pred hhhccccccccc-ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCC---chhhcccEEE
Q 006505 45 LSKLEEAADSDG-VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPID---KAQFRKVSGY 120 (643)
Q Consensus 45 ~~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~---~~~~~~~i~y 120 (643)
.++++|++.+|+ ++++|+|+|+++++||.+||+||||||||||+|+|+|+++|++|+|++||.++. ...+|+.+||
T Consensus 473 ~I~~~~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~ 552 (708)
T TIGR01193 473 DIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINY 552 (708)
T ss_pred cEEEEEEEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEE
Confidence 367889999996 468999999999999999999999999999999999999999999999998874 3578899999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhh-------hhhhcCCCcCCCCCHHHHHHHHHHH
Q 006505 121 VTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHV-------AMARVGDDRVRGISGGERRRVSIGF 193 (643)
Q Consensus 121 v~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~-------~~~~vg~~~~~~LSGGerqRv~ia~ 193 (643)
|+|++.+|+. |++|||.++... ..+ ++++.++++..++.+. .|+.+|+ ....||||||||++|||
T Consensus 553 v~Q~~~lf~g-TI~eNi~l~~~~--~~~----~~~i~~a~~~a~l~~~i~~lp~gldt~i~e-~G~~LSgGQrQRialAR 624 (708)
T TIGR01193 553 LPQEPYIFSG-SILENLLLGAKE--NVS----QDEIWAACEIAEIKDDIENMPLGYQTELSE-EGSSISGGQKQRIALAR 624 (708)
T ss_pred EecCceehhH-HHHHHHhccCCC--CCC----HHHHHHHHHHhCCHHHHHhcccccCcEecC-CCCCCCHHHHHHHHHHH
Confidence 9999999987 999999875311 112 2345666776666543 3566643 56789999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 194 DVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 194 aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
||+++|++|+||||||+||+.+...+.+.|+++ .|+|+|+++|+++ ..+.+|+|++|++|++++.|+++++.+
T Consensus 625 all~~p~iliLDE~Ts~LD~~te~~i~~~L~~~---~~~T~IiitHr~~--~~~~~D~i~~l~~G~i~~~G~~~~L~~ 697 (708)
T TIGR01193 625 ALLTDSKVLILDESTSNLDTITEKKIVNNLLNL---QDKTIIFVAHRLS--VAKQSDKIIVLDHGKIIEQGSHDELLD 697 (708)
T ss_pred HHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh---cCCEEEEEecchH--HHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999999875 3799999999986 468899999999999999999998754
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=321.82 Aligned_cols=167 Identities=34% Similarity=0.578 Sum_probs=151.9
Q ss_pred hcccccccccc--cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEEEE
Q 006505 47 KLEEAADSDGV--RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGYV 121 (643)
Q Consensus 47 ~~~~~~~~~~~--~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~yv 121 (643)
++++++++|+. +.+++|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ..+++.++|+
T Consensus 2 ~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (173)
T cd03246 2 EVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYL 81 (173)
T ss_pred EEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEE
Confidence 36778888865 569999999999999999999999999999999999999999999999987743 3456789999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCE
Q 006505 122 TQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKV 201 (643)
Q Consensus 122 ~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~i 201 (643)
+|++.+++. ||+||+ ||||||||++||++|+.+|++
T Consensus 82 ~q~~~~~~~-tv~~~l-------------------------------------------LS~G~~qrv~la~al~~~p~~ 117 (173)
T cd03246 82 PQDDELFSG-SIAENI-------------------------------------------LSGGQRQRLGLARALYGNPRI 117 (173)
T ss_pred CCCCccccC-cHHHHC-------------------------------------------cCHHHHHHHHHHHHHhcCCCE
Confidence 999988875 999987 999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeE
Q 006505 202 LILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSV 260 (643)
Q Consensus 202 lllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 260 (643)
++|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+ +.+|++++|++|++
T Consensus 118 lllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~~sh~~~-~~-~~~d~v~~l~~G~i 173 (173)
T cd03246 118 LVLDEPNSHLDVEGERALNQAIAALKAA-GATRIVIAHRPE-TL-ASADRILVLEDGRV 173 (173)
T ss_pred EEEECCccccCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHH-HH-HhCCEEEEEECCCC
Confidence 9999999999999999999999999864 999999999986 35 68999999999974
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=371.22 Aligned_cols=214 Identities=24% Similarity=0.391 Sum_probs=183.1
Q ss_pred hhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc----hhhcccEE
Q 006505 44 ELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK----AQFRKVSG 119 (643)
Q Consensus 44 ~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~----~~~~~~i~ 119 (643)
++++++++++ .+|+|+||++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++.. ...++.+|
T Consensus 256 ~~l~~~~l~~-----~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~ 330 (501)
T PRK10762 256 VRLKVDNLSG-----PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIV 330 (501)
T ss_pred cEEEEeCccc-----CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCE
Confidence 3566777763 47999999999999999999999999999999999999999999999988743 23456799
Q ss_pred EEccCC---CCCCCCCHHHHHHHHHH--hcC--C-CCHHHHHHHHHHHHHHcCCh-hhhhhhcCCCcCCCCCHHHHHHHH
Q 006505 120 YVTQRD---TLFPLLTVEETLMFSAK--LRL--R-LPQAQLRARVKSLVKELGLE-HVAMARVGDDRVRGISGGERRRVS 190 (643)
Q Consensus 120 yv~Q~~---~l~~~lTv~E~l~~~~~--~~~--~-~~~~~~~~~v~~~l~~lgl~-~~~~~~vg~~~~~~LSGGerqRv~ 190 (643)
||+|++ .+++.+||.||+.+... ... + ...++.+++++++++.+|+. +.. ++++.+|||||||||+
T Consensus 331 ~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~LSgGekqrv~ 405 (501)
T PRK10762 331 YISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSM-----EQAIGLLSGGNQQKVA 405 (501)
T ss_pred EecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCc-----cCchhhCCHHHHHHHH
Confidence 999995 57888999999987532 110 1 12334456789999999995 445 4567899999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHH
Q 006505 191 IGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLL 269 (643)
Q Consensus 191 ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 269 (643)
||++|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++|||++ ++.++||++++|++|+++..|+++++
T Consensus 406 lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-g~tviivtHd~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 482 (501)
T PRK10762 406 IARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAE-GLSIILVSSEMP-EVLGMSDRILVMHEGRISGEFTREQA 482 (501)
T ss_pred HHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHC-CCEEEEEcCCHH-HHHhhCCEEEEEECCEEEEEeccccC
Confidence 999999999999999999999999999999999999875 999999999997 58899999999999999999988765
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=381.18 Aligned_cols=213 Identities=32% Similarity=0.512 Sum_probs=183.4
Q ss_pred hhhcccccccccc-cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEEE
Q 006505 45 LSKLEEAADSDGV-RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGY 120 (643)
Q Consensus 45 ~~~~~~~~~~~~~-~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~y 120 (643)
.+++++++.+|+. +++|+|+|++++|||.++|+|+||||||||+|+|+|+++|++|+|.+||+++.. ..+++.++|
T Consensus 334 ~I~~~~vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 413 (588)
T PRK13657 334 AVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAV 413 (588)
T ss_pred eEEEEEEEEEeCCCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEE
Confidence 3678899999864 679999999999999999999999999999999999999999999999988753 567899999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhh-------hhhhcCCCcCCCCCHHHHHHHHHHH
Q 006505 121 VTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHV-------AMARVGDDRVRGISGGERRRVSIGF 193 (643)
Q Consensus 121 v~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~-------~~~~vg~~~~~~LSGGerqRv~ia~ 193 (643)
|||++.+|+. |++||+.++. ...+ ++++.++++..++++. .|+.+|+ ....||||||||++|||
T Consensus 414 v~Q~~~lf~~-Ti~~Ni~~~~---~~~~----d~~i~~al~~~~l~~~i~~lp~gldt~i~~-~g~~LSgGq~QRialAR 484 (588)
T PRK13657 414 VFQDAGLFNR-SIEDNIRVGR---PDAT----DEEMRAAAERAQAHDFIERKPDGYDTVVGE-RGRQLSGGERQRLAIAR 484 (588)
T ss_pred EecCcccccc-cHHHHHhcCC---CCCC----HHHHHHHHHHhCHHHHHHhCcccccchhcC-CCCCCCHHHHHHHHHHH
Confidence 9999999987 9999998752 1112 2345566666666543 3555544 46689999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 194 DVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 194 aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
||+++|++++||||||+||+.++..+.+.|+++.+ ++|+|++||+++ ..+.+|+|++|++|+++..|+.+++.
T Consensus 485 all~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~--~~tvIiitHr~~--~~~~~D~ii~l~~G~i~~~g~~~~l~ 557 (588)
T PRK13657 485 ALLKDPPILILDEATSALDVETEAKVKAALDELMK--GRTTFIIAHRLS--TVRNADRILVFDNGRVVESGSFDELV 557 (588)
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhc--CCEEEEEEecHH--HHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999998753 799999999985 56889999999999999999988875
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=340.40 Aligned_cols=215 Identities=20% Similarity=0.248 Sum_probs=176.3
Q ss_pred hhhhcccccccccc--cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccE
Q 006505 44 ELSKLEEAADSDGV--RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVS 118 (643)
Q Consensus 44 ~~~~~~~~~~~~~~--~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i 118 (643)
..+++++++++|++ +.+|+|+|+++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.. ..+++.+
T Consensus 18 ~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i 97 (257)
T cd03288 18 GEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRL 97 (257)
T ss_pred ceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhE
Confidence 34678899999876 579999999999999999999999999999999999999999999999988743 3467789
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhc------CCCcCCCCCHHHHHHHHHH
Q 006505 119 GYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARV------GDDRVRGISGGERRRVSIG 192 (643)
Q Consensus 119 ~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~v------g~~~~~~LSGGerqRv~ia 192 (643)
+|++|++.+++. |++||+.... ... .+.+.+.++..++.+..+... -+..+..||||||||++||
T Consensus 98 ~~v~q~~~l~~~-tv~~nl~~~~----~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~la 168 (257)
T cd03288 98 SIILQDPILFSG-SIRFNLDPEC----KCT----DDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLA 168 (257)
T ss_pred EEECCCCccccc-HHHHhcCcCC----CCC----HHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHH
Confidence 999999988875 9999985321 111 122334444444443322211 1346689999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 193 FDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 193 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
++|+.+|++++|||||+|||+.++..+.+.|++++ + +.|||++||+++. +. .+|++++|++|+++..|+++++.+
T Consensus 169 ral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~-~~tiii~sh~~~~-~~-~~dri~~l~~G~i~~~g~~~~~~~ 243 (257)
T cd03288 169 RAFVRKSSILIMDEATASIDMATENILQKVVMTAF-A-DRTVVTIAHRVST-IL-DADLVLVLSRGILVECDTPENLLA 243 (257)
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-C-CCEEEEEecChHH-HH-hCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999874 3 8999999999974 55 499999999999999999887643
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-40 Score=349.64 Aligned_cols=188 Identities=34% Similarity=0.575 Sum_probs=168.1
Q ss_pred EECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc-hhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHH
Q 006505 76 IVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-AQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRA 154 (643)
Q Consensus 76 IlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~-~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~ 154 (643)
|+||||||||||||+|+|+.+|++|+|.++|+++.. ...++.++|++|++.+++.+||+||+.|+...+ +.++++.++
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~-~~~~~~~~~ 79 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMR-KVPRAEIKP 79 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhc-CCCHHHHHH
Confidence 689999999999999999999999999999998743 234577999999999999999999999986543 224455567
Q ss_pred HHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEE
Q 006505 155 RVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTV 234 (643)
Q Consensus 155 ~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tv 234 (643)
+++++++.+||++.. ++.+.+|||||||||+|||||+.+|+++||||||+|||+.++..+.+.|++++++.|+||
T Consensus 80 ~~~~~l~~~~l~~~~-----~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~ti 154 (325)
T TIGR01187 80 RVLEALRLVQLEEFA-----DRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITF 154 (325)
T ss_pred HHHHHHHHcCCcchh-----cCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 889999999998766 446789999999999999999999999999999999999999999999999987669999
Q ss_pred EEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 235 ILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 235 i~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
|++|||++ ++.+++|++++|++|+++..|+++++.
T Consensus 155 iivTHd~~-e~~~~~d~i~vl~~G~i~~~g~~~~~~ 189 (325)
T TIGR01187 155 VFVTHDQE-EAMTMSDRIAIMRKGKIAQIGTPEEIY 189 (325)
T ss_pred EEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999997 588999999999999999999998874
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-40 Score=331.75 Aligned_cols=195 Identities=30% Similarity=0.515 Sum_probs=166.8
Q ss_pred EEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEccCCCCC--CCCCHHHHHHHHHHh
Q 006505 66 CKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLF--PLLTVEETLMFSAKL 143 (643)
Q Consensus 66 ~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~--~~lTv~E~l~~~~~~ 143 (643)
+++++||+++|+||||||||||+++|+|+.+|++|+|.+||+++. ..++.++|++|++.++ ..+|+.||+.++...
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~ 78 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG--KGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTG 78 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch--HhhCcEEEecccccccCCCCccHHHHHHhcccc
Confidence 468999999999999999999999999999999999999998763 3457799999998764 347999999875321
Q ss_pred cC---CCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH
Q 006505 144 RL---RLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQII 220 (643)
Q Consensus 144 ~~---~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~ 220 (643)
.. ....+..++++.++++.+|+++.. +..+.+||||||||++||++|+.+|+++++||||+|||+.++..+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~ 153 (223)
T TIGR03771 79 HIGWLRRPCVADFAAVRDALRRVGLTELA-----DRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLT 153 (223)
T ss_pred ccccccCCcHHHHHHHHHHHHHhCCchhh-----cCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence 10 112223345688999999998765 3466799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 221 DMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 221 ~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
+.|++++++ |+|+|++||+++ ++.+++|+++++ +|++++.|+++++.
T Consensus 154 ~~l~~~~~~-~~tvii~sH~~~-~~~~~~d~i~~l-~G~i~~~~~~~~~~ 200 (223)
T TIGR03771 154 ELFIELAGA-GTAILMTTHDLA-QAMATCDRVVLL-NGRVIADGTPQQLQ 200 (223)
T ss_pred HHHHHHHHc-CCEEEEEeCCHH-HHHHhCCEEEEE-CCEEEeecCHHHhc
Confidence 999999864 999999999997 588999999999 89999999988764
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=388.80 Aligned_cols=212 Identities=29% Similarity=0.481 Sum_probs=181.3
Q ss_pred hhhcccccccccc---cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccE
Q 006505 45 LSKLEEAADSDGV---RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVS 118 (643)
Q Consensus 45 ~~~~~~~~~~~~~---~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i 118 (643)
.++++|++.+|++ +++|+|+|++++|||.+||+||||||||||+|+|+|+++|++|+|.+||+++.+ ..+++++
T Consensus 478 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i 557 (711)
T TIGR00958 478 LIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQV 557 (711)
T ss_pred eEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhc
Confidence 3678999999863 579999999999999999999999999999999999999999999999998743 5678899
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhh-------hhhhcCCCcCCCCCHHHHHHHHH
Q 006505 119 GYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHV-------AMARVGDDRVRGISGGERRRVSI 191 (643)
Q Consensus 119 ~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~-------~~~~vg~~~~~~LSGGerqRv~i 191 (643)
+||+|++.+|+. |++|||.++.. ..+ ++++.++++..++.+. .||.+|+ ....||||||||++|
T Consensus 558 ~~v~Q~~~lF~g-TIreNI~~g~~---~~~----~e~i~~al~~a~l~~~i~~lp~GldT~ige-~G~~LSGGQkQRlal 628 (711)
T TIGR00958 558 ALVGQEPVLFSG-SVRENIAYGLT---DTP----DEEIMAAAKAANAHDFIMEFPNGYDTEVGE-KGSQLSGGQKQRIAI 628 (711)
T ss_pred eEEecCcccccc-CHHHHHhcCCC---CCC----HHHHHHHHHHcCCHHHHHhCCCccCCcccC-CCCcCCHHHHHHHHH
Confidence 999999999986 99999987531 112 3456677777777643 3555653 467899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 192 GFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 192 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
||||+++|+|++||||||+||+.+...+.+ .. . . .++|+|+++|+++ ..+.+|+|++|++|++++.|+++++.+
T Consensus 629 ARALl~~p~ILILDEpTSaLD~~te~~i~~-~~-~-~-~~~TvIiItHrl~--~i~~aD~IivL~~G~ive~Gt~~eL~~ 702 (711)
T TIGR00958 629 ARALVRKPRVLILDEATSALDAECEQLLQE-SR-S-R-ASRTVLLIAHRLS--TVERADQILVLKKGSVVEMGTHKQLME 702 (711)
T ss_pred HHHHhcCCCEEEEEccccccCHHHHHHHHH-hh-c-c-CCCeEEEEeccHH--HHHhCCEEEEEECCEEEEeeCHHHHHh
Confidence 999999999999999999999999999988 22 2 2 4899999999986 457899999999999999999998864
|
|
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-40 Score=358.11 Aligned_cols=211 Identities=22% Similarity=0.341 Sum_probs=181.4
Q ss_pred hhhcccccccccc---cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEE
Q 006505 45 LSKLEEAADSDGV---RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYV 121 (643)
Q Consensus 45 ~~~~~~~~~~~~~---~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv 121 (643)
++++++++.+++. +.+|+|+||++++||+++|+|||||||||||++|+|+.+|++|+|.++|.+. ++
T Consensus 21 mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~----------~i 90 (549)
T PRK13545 21 FDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA----------LI 90 (549)
T ss_pred eeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee----------eE
Confidence 5678888888776 4699999999999999999999999999999999999999999999999642 22
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCE
Q 006505 122 TQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKV 201 (643)
Q Consensus 122 ~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~i 201 (643)
.+...+.+.+|++||+.+..... ..+.++..++++++++.+++.+..+ ++++.||||||||++||+||+.+|++
T Consensus 91 ~~~~~l~~~lTV~EnL~l~~~~~-~~~~~e~~e~i~elLe~lgL~~~ld-----~~~~~LSGGQrQRVaLArAL~~~P~L 164 (549)
T PRK13545 91 AISSGLNGQLTGIENIELKGLMM-GLTKEKIKEIIPEIIEFADIGKFIY-----QPVKTYSSGMKSRLGFAISVHINPDI 164 (549)
T ss_pred EeccccCCCCcHHHHHHhhhhhc-CCCHHHHHHHHHHHHHHcCChhHhh-----CCcccCCHHHHHHHHHHHHHHhCCCE
Confidence 23445667789999998755432 2234555667889999999987764 46789999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHHHH
Q 006505 202 LILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSVSL 273 (643)
Q Consensus 202 lllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f 273 (643)
|||||||+|||+.++..+++.|+++++ .|+|||++||+++ .+.++||++++|++|++++.|+++++...+
T Consensus 165 LLLDEPTsgLD~~sr~~LlelL~el~~-~G~TIIIVSHdl~-~i~~l~DrIivL~~GkIv~~G~~~el~~~~ 234 (549)
T PRK13545 165 LVIDEALSVGDQTFTKKCLDKMNEFKE-QGKTIFFISHSLS-QVKSFCTKALWLHYGQVKEYGDIKEVVDHY 234 (549)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEECCHHHHHhhH
Confidence 999999999999999999999999976 4999999999997 588899999999999999999998876543
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-40 Score=328.63 Aligned_cols=196 Identities=25% Similarity=0.354 Sum_probs=166.6
Q ss_pred hhcccccccccc--cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEEE
Q 006505 46 SKLEEAADSDGV--RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGY 120 (643)
Q Consensus 46 ~~~~~~~~~~~~--~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~y 120 (643)
+++++++++|+. +.+++|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ...++.++|
T Consensus 7 l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 86 (207)
T cd03369 7 IEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTI 86 (207)
T ss_pred EEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEE
Confidence 567888888875 479999999999999999999999999999999999999999999999987632 345678999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCC
Q 006505 121 VTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPK 200 (643)
Q Consensus 121 v~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~ 200 (643)
++|++.+++. |++||+.+.. .... +.+.+.++ + +..+..||||||||++|||+|+.+|+
T Consensus 87 v~q~~~~~~~-tv~~~l~~~~----~~~~----~~~~~~l~---~---------~~~~~~LS~G~~qrv~laral~~~p~ 145 (207)
T cd03369 87 IPQDPTLFSG-TIRSNLDPFD----EYSD----EEIYGALR---V---------SEGGLNLSQGQRQLLCLARALLKRPR 145 (207)
T ss_pred EecCCcccCc-cHHHHhcccC----CCCH----HHHHHHhh---c---------cCCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 9999988875 9999996531 1121 12333333 1 34678999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecCh
Q 006505 201 VLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTV 266 (643)
Q Consensus 201 illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 266 (643)
+++|||||+|||+.++..+.+.|++++ + |+|+|++||+++. +.. +|++++|++|+++..|++
T Consensus 146 llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~th~~~~-~~~-~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 146 VLVLDEATASIDYATDALIQKTIREEF-T-NSTILTIAHRLRT-IID-YDKILVMDAGEVKEYDHP 207 (207)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCCHHH-Hhh-CCEEEEEECCEEEecCCC
Confidence 999999999999999999999999984 3 8999999999974 544 999999999999988763
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=321.61 Aligned_cols=173 Identities=32% Similarity=0.552 Sum_probs=155.1
Q ss_pred hccccccccccc--ceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc--hhhcccEEEEc
Q 006505 47 KLEEAADSDGVR--RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK--AQFRKVSGYVT 122 (643)
Q Consensus 47 ~~~~~~~~~~~~--~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~--~~~~~~i~yv~ 122 (643)
++++++++|+.+ ++++|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ..+++.++|++
T Consensus 2 ~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 81 (178)
T cd03247 2 SINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLN 81 (178)
T ss_pred EEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEc
Confidence 356777887664 79999999999999999999999999999999999999999999999987642 34567899999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEE
Q 006505 123 QRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVL 202 (643)
Q Consensus 123 Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~il 202 (643)
|++.+++ .|++||+ +..||||||||++|||+|+.+|+++
T Consensus 82 q~~~~~~-~tv~~~i----------------------------------------~~~LS~G~~qrv~laral~~~p~~l 120 (178)
T cd03247 82 QRPYLFD-TTLRNNL----------------------------------------GRRFSGGERQRLALARILLQDAPIV 120 (178)
T ss_pred cCCeeec-ccHHHhh----------------------------------------cccCCHHHHHHHHHHHHHhcCCCEE
Confidence 9998886 5999987 3589999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEec
Q 006505 203 ILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHG 264 (643)
Q Consensus 203 llDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 264 (643)
+|||||+|||+.++..+++.|++++ + +.|||++||+++. + +.+|++++|++|++++.|
T Consensus 121 llDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~-~-~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 121 LLDEPTVGLDPITERQLLSLIFEVL-K-DKTLIWITHHLTG-I-EHMDKILFLENGKIIMQG 178 (178)
T ss_pred EEECCcccCCHHHHHHHHHHHHHHc-C-CCEEEEEecCHHH-H-HhCCEEEEEECCEEEecC
Confidence 9999999999999999999999985 3 8999999999973 5 579999999999998764
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-39 Score=333.27 Aligned_cols=198 Identities=24% Similarity=0.350 Sum_probs=174.0
Q ss_pred cccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEccCCCCCCCCCHHH
Q 006505 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTVEE 135 (643)
Q Consensus 56 ~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E 135 (643)
..+++|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+ +++++|+..+.+.+|+.|
T Consensus 35 ~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~----------~~~~~~~~~~~~~~tv~e 104 (264)
T PRK13546 35 KTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGE----------VSVIAISAGLSGQLTGIE 104 (264)
T ss_pred CceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCE----------EeEEecccCCCCCCcHHH
Confidence 4567999999999999999999999999999999999999999999999984 356778877788899999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Q 006505 136 TLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTS 215 (643)
Q Consensus 136 ~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~ 215 (643)
|+.+..... ..+.++..+.++++++.+++.+.. +..+++||||||||++||++|+.+|++|+|||||+|||+.+
T Consensus 105 nl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~ 178 (264)
T PRK13546 105 NIEFKMLCM-GFKRKEIKAMTPKIIEFSELGEFI-----YQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTF 178 (264)
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHHHHHcCCchhh-----cCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHH
Confidence 998765432 223445556678889999998766 44678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 216 ALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 216 ~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
+..+.+.|+++++ .|+|||++||+++ ++.+++|++++|++|+++..|+++++.+
T Consensus 179 ~~~l~~~L~~~~~-~g~tiIiisH~~~-~i~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (264)
T PRK13546 179 AQKCLDKIYEFKE-QNKTIFFVSHNLG-QVRQFCTKIAWIEGGKLKDYGELDDVLP 232 (264)
T ss_pred HHHHHHHHHHHHH-CCCEEEEEcCCHH-HHHHHcCEEEEEECCEEEEeCCHHHHHH
Confidence 9999999999976 4999999999987 5788999999999999999999887754
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=377.93 Aligned_cols=213 Identities=26% Similarity=0.431 Sum_probs=184.9
Q ss_pred hhcccccccccc--cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCC---chhhcccEEE
Q 006505 46 SKLEEAADSDGV--RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPID---KAQFRKVSGY 120 (643)
Q Consensus 46 ~~~~~~~~~~~~--~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~---~~~~~~~i~y 120 (643)
++++|++.+|.+ +++|+|+|+++++||.++|+|+||||||||+|+|+|+++|++|+|++||++++ ...+++.++|
T Consensus 331 i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~ 410 (571)
T TIGR02203 331 VEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVAL 410 (571)
T ss_pred EEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceE
Confidence 668899988854 67999999999999999999999999999999999999999999999998864 3567889999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhh-------hhhhcCCCcCCCCCHHHHHHHHHHH
Q 006505 121 VTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHV-------AMARVGDDRVRGISGGERRRVSIGF 193 (643)
Q Consensus 121 v~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~-------~~~~vg~~~~~~LSGGerqRv~ia~ 193 (643)
|+|++.+|+. |++|||.++.. ++..+++++++++.+|+++. .|+.+|+. .+.||||||||++|||
T Consensus 411 v~Q~~~lf~~-Ti~~Ni~~~~~------~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~-g~~LSgGqrQRiaLAR 482 (571)
T TIGR02203 411 VSQDVVLFND-TIANNIAYGRT------EQADRAEIERALAAAYAQDFVDKLPLGLDTPIGEN-GVLLSGGQRQRLAIAR 482 (571)
T ss_pred EccCcccccc-cHHHHHhcCCC------CCCCHHHHHHHHHHcChHHHHHhCcCcccceecCC-CCcCCHHHHHHHHHHH
Confidence 9999999987 99999986521 01123467777888877643 35556543 5689999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 194 DVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 194 aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
+++++|++++||||||+||+.++..+++.|+++++ ++|+|++||+++ ..+.||+|++|++|+++..|+.+++.
T Consensus 483 all~~~~illLDEpts~LD~~~~~~i~~~L~~~~~--~~tiIiitH~~~--~~~~~D~ii~l~~g~i~~~g~~~~l~ 555 (571)
T TIGR02203 483 ALLKDAPILILDEATSALDNESERLVQAALERLMQ--GRTTLVIAHRLS--TIEKADRIVVMDDGRIVERGTHNELL 555 (571)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhC--CCEEEEEehhhH--HHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 99999999999999999999999999999998853 799999999985 57889999999999999999999874
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-40 Score=368.47 Aligned_cols=214 Identities=20% Similarity=0.375 Sum_probs=181.4
Q ss_pred hhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc----hhhcccEEE
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK----AQFRKVSGY 120 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~----~~~~~~i~y 120 (643)
.+++++++. +.+++|+|+++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++.. ...++.++|
T Consensus 257 ~l~~~~~~~----~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 332 (501)
T PRK11288 257 RLRLDGLKG----PGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIML 332 (501)
T ss_pred EEEEecccc----CCcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEE
Confidence 455666652 258999999999999999999999999999999999999999999999987642 234567999
Q ss_pred EccCC---CCCCCCCHHHHHHHHHHhcC---C--CCHHHHHHHHHHHHHHcCCh-hhhhhhcCCCcCCCCCHHHHHHHHH
Q 006505 121 VTQRD---TLFPLLTVEETLMFSAKLRL---R--LPQAQLRARVKSLVKELGLE-HVAMARVGDDRVRGISGGERRRVSI 191 (643)
Q Consensus 121 v~Q~~---~l~~~lTv~E~l~~~~~~~~---~--~~~~~~~~~v~~~l~~lgl~-~~~~~~vg~~~~~~LSGGerqRv~i 191 (643)
++|++ .+++.+|+.||+.+...... . ...+..++.++++++.+|+. +.. ++++..|||||||||+|
T Consensus 333 ~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~LSgGq~qrl~l 407 (501)
T PRK11288 333 CPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSR-----EQLIMNLSGGNQQKAIL 407 (501)
T ss_pred cCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCc-----cCccccCCHHHHHHHHH
Confidence 99996 48899999999987532110 0 02233345788999999994 455 44678999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHH
Q 006505 192 GFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLL 269 (643)
Q Consensus 192 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 269 (643)
|++|+.+|++|||||||+|||+.++.+++++|++++++ |.|||++|||++ ++.++||++++|++|++++.|++++.
T Consensus 408 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviivsHd~~-~~~~~~d~i~~l~~g~i~~~~~~~~~ 483 (501)
T PRK11288 408 GRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQ-GVAVLFVSSDLP-EVLGVADRIVVMREGRIAGELAREQA 483 (501)
T ss_pred HHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhC-CCEEEEECCCHH-HHHhhCCEEEEEECCEEEEEEccccC
Confidence 99999999999999999999999999999999999875 999999999997 58899999999999999999987764
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-40 Score=372.22 Aligned_cols=215 Identities=30% Similarity=0.504 Sum_probs=180.1
Q ss_pred hhhcccccccccc--cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEE
Q 006505 45 LSKLEEAADSDGV--RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSG 119 (643)
Q Consensus 45 ~~~~~~~~~~~~~--~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~ 119 (643)
.++++|++.+|++ +++|+|+|+++++||.++|+||||||||||+|+|+|+++|++|+|.+||+++.. ..+++.++
T Consensus 316 ~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~ 395 (544)
T TIGR01842 316 HLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIG 395 (544)
T ss_pred eEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheE
Confidence 3678899999853 689999999999999999999999999999999999999999999999988743 46788999
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhh-------hhhhcCCCcCCCCCHHHHHHHHHH
Q 006505 120 YVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHV-------AMARVGDDRVRGISGGERRRVSIG 192 (643)
Q Consensus 120 yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~-------~~~~vg~~~~~~LSGGerqRv~ia 192 (643)
||+|++.+|+. |++||+.+... ..+++ ++.+.++..++++. .|+.+| +....||||||||++||
T Consensus 396 ~v~q~~~lf~~-ti~~Ni~~~~~---~~~~~----~~~~~~~~~~~~~~i~~l~~gl~t~~~-~~g~~LSgGq~qrl~lA 466 (544)
T TIGR01842 396 YLPQDVELFPG-TVAENIARFGE---NADPE----KIIEAAKLAGVHELILRLPDGYDTVIG-PGGATLSGGQRQRIALA 466 (544)
T ss_pred EecCCcccccc-cHHHHHhccCC---CCCHH----HHHHHHHHhChHHHHHhCccccccccC-CCcCCCCHHHHHHHHHH
Confidence 99999999987 99999975321 11222 23333444443321 244443 45788999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 193 FDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 193 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
|||+++|++++|||||+|||+.++.++.+.|+++.+ .|+|+|+++|+++ ..+.+|+|++|++|++++.|+++++.+
T Consensus 467 Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~~tvi~ith~~~--~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 467 RALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKA-RGITVVVITHRPS--LLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred HHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhh-CCCEEEEEeCCHH--HHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 999999999999999999999999999999999865 3899999999986 457899999999999999999887753
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=366.28 Aligned_cols=214 Identities=21% Similarity=0.348 Sum_probs=180.8
Q ss_pred hhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCch----hhcccEE
Q 006505 44 ELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKA----QFRKVSG 119 (643)
Q Consensus 44 ~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~----~~~~~i~ 119 (643)
+++++++++. .+|+|+|+++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++... ..++.++
T Consensus 267 ~~l~~~~l~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~ 341 (510)
T PRK15439 267 PVLTVEDLTG-----EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLV 341 (510)
T ss_pred ceEEEeCCCC-----CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcE
Confidence 3677788773 269999999999999999999999999999999999999999999999877431 2346799
Q ss_pred EEccCC---CCCCCCCHHHHHHHHHH--hcCCCCHHHHHHHHHHHHHHcCCh-hhhhhhcCCCcCCCCCHHHHHHHHHHH
Q 006505 120 YVTQRD---TLFPLLTVEETLMFSAK--LRLRLPQAQLRARVKSLVKELGLE-HVAMARVGDDRVRGISGGERRRVSIGF 193 (643)
Q Consensus 120 yv~Q~~---~l~~~lTv~E~l~~~~~--~~~~~~~~~~~~~v~~~l~~lgl~-~~~~~~vg~~~~~~LSGGerqRv~ia~ 193 (643)
|++|++ .+++.+|+.||+..... ..........+++++++++.+|++ +.. ++++++|||||||||+||+
T Consensus 342 ~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~LSgG~kqrl~la~ 416 (510)
T PRK15439 342 YLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHA-----EQAARTLSGGNQQKVLIAK 416 (510)
T ss_pred ECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCc-----cCccccCCcHHHHHHHHHH
Confidence 999984 48888999999864311 111111223345788999999996 555 4467899999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHH
Q 006505 194 DVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLL 269 (643)
Q Consensus 194 aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 269 (643)
+|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++|||++ ++.++||++++|++|+++..|+++++
T Consensus 417 al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~-g~tiIivsHd~~-~i~~~~d~i~~l~~G~i~~~~~~~~~ 490 (510)
T PRK15439 417 CLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQ-NVAVLFISSDLE-EIEQMADRVLVMHQGEISGALTGAAI 490 (510)
T ss_pred HHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhC-CCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEEccccC
Confidence 999999999999999999999999999999999875 999999999997 58899999999999999999877653
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-40 Score=382.27 Aligned_cols=214 Identities=31% Similarity=0.500 Sum_probs=183.2
Q ss_pred hhhccccccccc--ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEE
Q 006505 45 LSKLEEAADSDG--VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSG 119 (643)
Q Consensus 45 ~~~~~~~~~~~~--~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~ 119 (643)
.+++++++.+|+ ++.+|+|+|+++++||.+||+|+||||||||+|+|+|+++|++|+|++||+++.. ..+|+.++
T Consensus 455 ~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~ 534 (694)
T TIGR01846 455 AITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMG 534 (694)
T ss_pred eEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCe
Confidence 367899999985 3569999999999999999999999999999999999999999999999998743 56789999
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhh-------hhhhcCCCcCCCCCHHHHHHHHHH
Q 006505 120 YVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHV-------AMARVGDDRVRGISGGERRRVSIG 192 (643)
Q Consensus 120 yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~-------~~~~vg~~~~~~LSGGerqRv~ia 192 (643)
||+|++.+|+. |++||+.++.. ..+ ++++.++++..++.+. .|+.+|+ ....||||||||++||
T Consensus 535 ~v~q~~~lf~~-ti~eNi~~~~~---~~~----~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~-~g~~LSgGq~qri~lA 605 (694)
T TIGR01846 535 VVLQENVLFSR-SIRDNIALCNP---GAP----FEHVIHAAKLAGAHDFISELPQGYNTEVGE-KGANLSGGQRQRIAIA 605 (694)
T ss_pred EEccCCeehhh-hHHHHHhcCCC---CCC----HHHHHHHHHHcChHHHHHhCcCccCcEecC-CCCCCCHHHHHHHHHH
Confidence 99999999986 99999976421 112 2345566666665543 3555644 4678999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 193 FDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 193 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
|||+++|++++||||||+||+.++..+.+.|+++. .++|+|++||+++ ..+.+|+|++|++|++++.|+++++.+
T Consensus 606 Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~--~~~~~d~ii~l~~G~i~~~g~~~~l~~ 680 (694)
T TIGR01846 606 RALVGNPRILIFDEATSALDYESEALIMRNMREIC--RGRTVIIIAHRLS--TVRACDRIIVLEKGQIAESGRHEELLA 680 (694)
T ss_pred HHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh--CCCEEEEEeCChH--HHHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 99999999999999999999999999999999985 3899999999996 346799999999999999999988753
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=323.33 Aligned_cols=191 Identities=29% Similarity=0.416 Sum_probs=157.6
Q ss_pred hccccccccccc-----ceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEE
Q 006505 47 KLEEAADSDGVR-----RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYV 121 (643)
Q Consensus 47 ~~~~~~~~~~~~-----~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv 121 (643)
+++|++++|+++ .+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++| .++|+
T Consensus 2 ~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g----------~i~~~ 71 (204)
T cd03250 2 SVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG----------SIAYV 71 (204)
T ss_pred EEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC----------EEEEE
Confidence 467888888764 699999999999999999999999999999999999999999999998 59999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhh------cCCCcCCCCCHHHHHHHHHHHHH
Q 006505 122 TQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMAR------VGDDRVRGISGGERRRVSIGFDV 195 (643)
Q Consensus 122 ~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~------vg~~~~~~LSGGerqRv~ia~aL 195 (643)
+|++.+++ .|++||+.+.... .. +...+.++.+++.+..+.. .-+..+.+||||||||++||++|
T Consensus 72 ~q~~~l~~-~t~~enl~~~~~~----~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral 142 (204)
T cd03250 72 SQEPWIQN-GTIRENILFGKPF----DE----ERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAV 142 (204)
T ss_pred ecCchhcc-CcHHHHhccCCCc----CH----HHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHH
Confidence 99998885 5999999874321 11 1233444555554322211 11345789999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCe
Q 006505 196 IHDPKVLILDEPTSGLDSTSALQIID-MLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGS 259 (643)
Q Consensus 196 ~~~p~illlDEPtsgLD~~~~~~i~~-~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 259 (643)
+.+|++++|||||+|||+.++..+.+ ++++++++ |+|||++||+++ .+.. +|++++|++|+
T Consensus 143 ~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~-~~tvi~~sh~~~-~~~~-~d~i~~l~~G~ 204 (204)
T cd03250 143 YSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLN-NKTRILVTHQLQ-LLPH-ADQIVVLDNGR 204 (204)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccC-CCEEEEEeCCHH-HHhh-CCEEEEEeCCC
Confidence 99999999999999999999999998 56777664 899999999997 3555 99999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=367.07 Aligned_cols=216 Identities=31% Similarity=0.462 Sum_probs=189.3
Q ss_pred hhhcccccccccc----cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hh----
Q 006505 45 LSKLEEAADSDGV----RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQ---- 113 (643)
Q Consensus 45 ~~~~~~~~~~~~~----~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~---- 113 (643)
+++++|++++|+. +.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|++|+|.+||+++.. .+
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 5678899988853 579999999999999999999999999999999999999999999999998753 22
Q ss_pred hcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHH
Q 006505 114 FRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGF 193 (643)
Q Consensus 114 ~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~ 193 (643)
.++.++|++|+..+++.+|+.||+.+..... +.+.++.++++.++++.+|+.+..+ ..+..||||||||++|||
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~~l~~lgl~~~~~-----~~~~~LS~Gq~qrv~LAr 157 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYA-GLERKQRLLRAQELLQRLGLEDRVE-----YQPSQLSGGQQQRVSIAR 157 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHCCChhhhc-----CCcccCCHHHHHHHHHHH
Confidence 2467999999999999999999999865432 2244556678899999999987664 467799999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHH
Q 006505 194 DVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLL 269 (643)
Q Consensus 194 aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 269 (643)
+|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|+|++||+++ ..+.+|++++|++|++++.|++++.
T Consensus 158 aL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~-~g~tilivsH~~~--~~~~~d~i~~l~~G~i~~~g~~~~~ 230 (648)
T PRK10535 158 ALMNGGQVILADEPTGALDSHSGEEVMAILHQLRD-RGHTVIIVTHDPQ--VAAQAERVIEIRDGEIVRNPPAQEK 230 (648)
T ss_pred HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEECCCHH--HHHhCCEEEEEECCEEEeecCcccc
Confidence 99999999999999999999999999999999976 4999999999986 3467999999999999999987643
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-40 Score=373.57 Aligned_cols=213 Identities=29% Similarity=0.471 Sum_probs=183.1
Q ss_pred hhhcccccccccc---cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccE
Q 006505 45 LSKLEEAADSDGV---RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVS 118 (643)
Q Consensus 45 ~~~~~~~~~~~~~---~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i 118 (643)
.++++|++.+|+. +.+|+|+|++++|||.++|+||||||||||+|+|+|+++|++|+|.+||.+++. ..+++.+
T Consensus 337 ~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 416 (576)
T TIGR02204 337 EIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARM 416 (576)
T ss_pred eEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhc
Confidence 3678899988854 579999999999999999999999999999999999999999999999988743 5678899
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhh-------hhhcCCCcCCCCCHHHHHHHHH
Q 006505 119 GYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVA-------MARVGDDRVRGISGGERRRVSI 191 (643)
Q Consensus 119 ~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~-------~~~vg~~~~~~LSGGerqRv~i 191 (643)
+|+||++.+|+. |++||+.++.. ..+ ++++.++++..|+.+.. ++.+|+ ....||||||||++|
T Consensus 417 ~~~~Q~~~lf~~-Ti~~Ni~~~~~---~~~----~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~-~g~~LSgGq~Qrl~l 487 (576)
T TIGR02204 417 ALVPQDPVLFAA-SVMENIRYGRP---DAT----DEEVEAAARAAHAHEFISALPEGYDTYLGE-RGVTLSGGQRQRIAI 487 (576)
T ss_pred eEEccCCccccc-cHHHHHhcCCC---CCC----HHHHHHHHHHcCcHHHHHhCCCCCCceeCC-CCCcCCHHHHHHHHH
Confidence 999999999987 99999976421 112 34566777777765433 344543 466899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 192 GFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 192 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
|||++++|++++||||||+||+.++..+++.|+++.+ ++|+|++||+++ ..+.+|+|++|++|+++..|+++++.
T Consensus 488 aRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~--~~t~IiitH~~~--~~~~~d~vi~l~~g~~~~~g~~~~l~ 562 (576)
T TIGR02204 488 ARAILKDAPILLLDEATSALDAESEQLVQQALETLMK--GRTTLIIAHRLA--TVLKADRIVVMDQGRIVAQGTHAELI 562 (576)
T ss_pred HHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhC--CCEEEEEecchH--HHHhCCEEEEEECCEEEeeecHHHHH
Confidence 9999999999999999999999999999999999853 899999999985 46789999999999999999988764
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-39 Score=323.75 Aligned_cols=201 Identities=24% Similarity=0.373 Sum_probs=163.7
Q ss_pred hccccccccc-ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc-------hhhcccE
Q 006505 47 KLEEAADSDG-VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-------AQFRKVS 118 (643)
Q Consensus 47 ~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~-------~~~~~~i 118 (643)
++.++..+|+ .+++++|+|+++++||+++|+|||||||||||++|+|+.+|++|+|.++|+++.. ...++.+
T Consensus 2 ~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 81 (218)
T cd03290 2 QVTNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSV 81 (218)
T ss_pred eeeeeEEecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceE
Confidence 3567777786 4679999999999999999999999999999999999999999999999987632 1235679
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhh------cCCCcCCCCCHHHHHHHHHH
Q 006505 119 GYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMAR------VGDDRVRGISGGERRRVSIG 192 (643)
Q Consensus 119 ~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~------vg~~~~~~LSGGerqRv~ia 192 (643)
+|++|++.+++ .|++||+.+... ... ++..++++.+++.+..+.. .-+..+..||||||||++||
T Consensus 82 ~~~~q~~~~~~-~t~~~nl~~~~~----~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~la 152 (218)
T cd03290 82 AYAAQKPWLLN-ATVEENITFGSP----FNK----QRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVA 152 (218)
T ss_pred EEEcCCCcccc-ccHHHHHhhcCc----CCH----HHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHH
Confidence 99999998874 699999987431 111 2234566667765433211 11346789999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHH--HHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCe
Q 006505 193 FDVIHDPKVLILDEPTSGLDSTSALQIID--MLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGS 259 (643)
Q Consensus 193 ~aL~~~p~illlDEPtsgLD~~~~~~i~~--~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 259 (643)
++|+.+|+++||||||+|||+.++..+++ +++.+.+ .|.|+|++||+++. + ..+|++++|++|+
T Consensus 153 ral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~-~~~tii~~sH~~~~-~-~~~d~i~~l~~G~ 218 (218)
T cd03290 153 RALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQD-DKRTLVLVTHKLQY-L-PHADWIIAMKDGS 218 (218)
T ss_pred HHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhc-CCCEEEEEeCChHH-H-hhCCEEEEecCCC
Confidence 99999999999999999999999999998 6666654 58999999999973 5 5799999999874
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=371.46 Aligned_cols=213 Identities=26% Similarity=0.423 Sum_probs=181.3
Q ss_pred hhcccccccccc--cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEEE
Q 006505 46 SKLEEAADSDGV--RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGY 120 (643)
Q Consensus 46 ~~~~~~~~~~~~--~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~y 120 (643)
+++++++.+|+. +.+|+|+|+++++||.++|+||||||||||+++|+|+++|++|+|.+||+++.. ..+++.++|
T Consensus 314 I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 393 (569)
T PRK10789 314 LDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAV 393 (569)
T ss_pred EEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEE
Confidence 567888888854 579999999999999999999999999999999999999999999999998743 467889999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhh-------hhhhcCCCcCCCCCHHHHHHHHHHH
Q 006505 121 VTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHV-------AMARVGDDRVRGISGGERRRVSIGF 193 (643)
Q Consensus 121 v~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~-------~~~~vg~~~~~~LSGGerqRv~ia~ 193 (643)
|+|++.+|+. |++||+.++.. ..+ ++++++.++..++.+. .|+.+|+ ....||||||||++|||
T Consensus 394 v~q~~~lf~~-ti~~Ni~~~~~---~~~----~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~-~g~~LSgGq~qRi~lAR 464 (569)
T PRK10789 394 VSQTPFLFSD-TVANNIALGRP---DAT----QQEIEHVARLASVHDDILRLPQGYDTEVGE-RGVMLSGGQKQRISIAR 464 (569)
T ss_pred EccCCeeccc-cHHHHHhcCCC---CCC----HHHHHHHHHHcCCHHHHHhCcCcccceecC-CCCcCCHHHHHHHHHHH
Confidence 9999999986 99999986421 112 2345556666665432 3555543 46789999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 194 DVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 194 aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
||+++|++++|||||++||+.++..+.+.|+++. .|+|+|++||+++ ..+.+|+|++|++|+++..|+.+++.+
T Consensus 465 all~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tii~itH~~~--~~~~~d~i~~l~~G~i~~~g~~~~l~~ 538 (569)
T PRK10789 465 ALLLNAEILILDDALSAVDGRTEHQILHNLRQWG--EGRTVIISAHRLS--ALTEASEILVMQHGHIAQRGNHDQLAQ 538 (569)
T ss_pred HHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh--CCCEEEEEecchh--HHHcCCEEEEEeCCEEEEecCHHHHHH
Confidence 9999999999999999999999999999999985 3899999999986 457799999999999999999988753
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=370.98 Aligned_cols=214 Identities=25% Similarity=0.411 Sum_probs=179.8
Q ss_pred hhhcccccccccc-cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEEE
Q 006505 45 LSKLEEAADSDGV-RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGY 120 (643)
Q Consensus 45 ~~~~~~~~~~~~~-~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~y 120 (643)
.++++|++.+|++ +++|+|+|+++++||.++|+||||||||||+++|+|+++|++|+|.+||.++.. ..+++.++|
T Consensus 334 ~i~~~~v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 413 (585)
T TIGR01192 334 AVEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIAT 413 (585)
T ss_pred eEEEEEEEEECCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEE
Confidence 3678999999975 579999999999999999999999999999999999999999999999988743 567889999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhh-------hhhhcCCCcCCCCCHHHHHHHHHHH
Q 006505 121 VTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHV-------AMARVGDDRVRGISGGERRRVSIGF 193 (643)
Q Consensus 121 v~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~-------~~~~vg~~~~~~LSGGerqRv~ia~ 193 (643)
|+|++.+++. |++||+.++.. ..+++ ++.+.++..++.+. .++.+| +....||||||||++|||
T Consensus 414 v~q~~~lf~~-ti~~Ni~~~~~---~~~~~----~~~~a~~~~~~~~~i~~l~~g~~t~~~-~~~~~LSgGq~qrl~lAR 484 (585)
T TIGR01192 414 VFQDAGLFNR-SIRENIRLGRE---GATDE----EVYEAAKAAAAHDFILKRSNGYDTLVG-ERGNRLSGGERQRLAIAR 484 (585)
T ss_pred EccCCccCcc-cHHHHHhcCCC---CCCHH----HHHHHHHHhCcHHHHHhccccccchhc-CCCCCCCHHHHHHHHHHH
Confidence 9999999875 99999987521 11222 23344444444332 234443 457789999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 194 DVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 194 aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
||+.+|++++|||||+|||+.++..+.+.|+++. .++|+|++||+++. + +.+|+|++|++|+++..|+.+++.+
T Consensus 485 all~~p~ililDEpts~LD~~~~~~i~~~l~~~~--~~~tvI~isH~~~~-~-~~~d~i~~l~~G~i~~~g~~~~l~~ 558 (585)
T TIGR01192 485 AILKNAPILVLDEATSALDVETEARVKNAIDALR--KNRTTFIIAHRLST-V-RNADLVLFLDQGRLIEKGSFQELIQ 558 (585)
T ss_pred HHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh--CCCEEEEEEcChHH-H-HcCCEEEEEECCEEEEECCHHHHHH
Confidence 9999999999999999999999999999999885 38999999999963 4 6799999999999999999888753
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=344.81 Aligned_cols=214 Identities=31% Similarity=0.427 Sum_probs=193.9
Q ss_pred hhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc----hhhcccEEE
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK----AQFRKVSGY 120 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~----~~~~~~i~y 120 (643)
.+++++++|.|+...+++|||+++++||+.||+|.||||||||+|+|.|.++|++|+|++||+++.- +..+..||+
T Consensus 4 ~l~~~~itK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGM 83 (501)
T COG3845 4 ALEMRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGM 83 (501)
T ss_pred eEEEeccEEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcE
Confidence 4678899999999999999999999999999999999999999999999999999999999998742 456778999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcC
Q 006505 121 VTQRDTLFPLLTVEETLMFSAKLRL--RLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHD 198 (643)
Q Consensus 121 v~Q~~~l~~~lTv~E~l~~~~~~~~--~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~ 198 (643)
|.|+..|+|++||.||+.++..-.. ....++.+++++++.++.||+-.. +.++.+||-||||||.|-++|..+
T Consensus 84 VhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp-----~~~V~dLsVG~qQRVEIlKaLyr~ 158 (501)
T COG3845 84 VHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDP-----DAKVADLSVGEQQRVEILKALYRG 158 (501)
T ss_pred EeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCc-----cceeecCCcchhHHHHHHHHHhcC
Confidence 9999999999999999998865321 125667788999999999997555 346679999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecC
Q 006505 199 PKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGT 265 (643)
Q Consensus 199 p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 265 (643)
|++|+|||||+-|-|....++++.|++++++ |+|||++||-+. |+.++|||+.||.+|+++..-+
T Consensus 159 a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~-G~tIi~ITHKL~-Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 159 ARLLILDEPTAVLTPQEADELFEILRRLAAE-GKTIIFITHKLK-EVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeccHH-HHHHhhCeeEEEeCCeEEeeec
Confidence 9999999999999999999999999999985 999999999997 7999999999999999887665
|
|
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=313.42 Aligned_cols=165 Identities=39% Similarity=0.620 Sum_probs=149.6
Q ss_pred hccccccccccc--ceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEEEE
Q 006505 47 KLEEAADSDGVR--RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGYV 121 (643)
Q Consensus 47 ~~~~~~~~~~~~--~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~yv 121 (643)
++++++++|+++ .+++|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ..+++.++|+
T Consensus 2 ~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (171)
T cd03228 2 EFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYV 81 (171)
T ss_pred EEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEE
Confidence 467888888775 79999999999999999999999999999999999999999999999987642 3456789999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCE
Q 006505 122 TQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKV 201 (643)
Q Consensus 122 ~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~i 201 (643)
+|++.+++ .|+.||+ ||||||||++||++|+.+|++
T Consensus 82 ~~~~~~~~-~t~~e~l-------------------------------------------LS~G~~~rl~la~al~~~p~l 117 (171)
T cd03228 82 PQDPFLFS-GTIRENI-------------------------------------------LSGGQRQRIAIARALLRDPPI 117 (171)
T ss_pred cCCchhcc-chHHHHh-------------------------------------------hCHHHHHHHHHHHHHhcCCCE
Confidence 99988776 5998886 999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCe
Q 006505 202 LILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGS 259 (643)
Q Consensus 202 lllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 259 (643)
++|||||+|||+.++.++.+.|++++ + ++|||++||+++ ++.. +|++++|++|+
T Consensus 118 lllDEP~~gLD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~-~~~~-~d~~~~l~~g~ 171 (171)
T cd03228 118 LILDEATSALDPETEALILEALRALA-K-GKTVIVIAHRLS-TIRD-ADRIIVLDDGR 171 (171)
T ss_pred EEEECCCcCCCHHHHHHHHHHHHHhc-C-CCEEEEEecCHH-HHHh-CCEEEEEcCCC
Confidence 99999999999999999999999985 3 799999999997 4655 99999999885
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-39 Score=308.74 Aligned_cols=157 Identities=31% Similarity=0.501 Sum_probs=145.1
Q ss_pred hcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc----hhhcccEEEEc
Q 006505 47 KLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK----AQFRKVSGYVT 122 (643)
Q Consensus 47 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~----~~~~~~i~yv~ 122 (643)
++++++++|+++++++|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ...++.++|++
T Consensus 2 ~~~~l~~~~~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~ 81 (163)
T cd03216 2 ELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVY 81 (163)
T ss_pred EEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEE
Confidence 46788899988899999999999999999999999999999999999999999999999988753 22456789998
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEE
Q 006505 123 QRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVL 202 (643)
Q Consensus 123 Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~il 202 (643)
| ||||||||++||++|+.+|+++
T Consensus 82 q---------------------------------------------------------LS~G~~qrl~laral~~~p~il 104 (163)
T cd03216 82 Q---------------------------------------------------------LSVGERQMVEIARALARNARLL 104 (163)
T ss_pred e---------------------------------------------------------cCHHHHHHHHHHHHHhcCCCEE
Confidence 8 9999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEE
Q 006505 203 ILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLH 262 (643)
Q Consensus 203 llDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~ 262 (643)
+|||||+|||+.++..+.+.|++++++ |.|||++||+++ ++.+.+|++++|++|++++
T Consensus 105 llDEP~~~LD~~~~~~l~~~l~~~~~~-~~tiii~sh~~~-~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 105 ILDEPTAALTPAEVERLFKVIRRLRAQ-GVAVIFISHRLD-EVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEe
Confidence 999999999999999999999999864 899999999987 4788999999999999875
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-39 Score=316.83 Aligned_cols=192 Identities=22% Similarity=0.308 Sum_probs=163.6
Q ss_pred hhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEccCC
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRD 125 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~ 125 (643)
+.+++++++|+++.+++ +|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.... ++.++|++|++
T Consensus 2 l~~~~l~~~~~~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~-~~~~~~~~~~~ 79 (195)
T PRK13541 2 LSLHQLQFNIEQKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA-KPYCTYIGHNL 79 (195)
T ss_pred eEEEEeeEEECCcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh-hhhEEeccCCc
Confidence 45788889998766665 99999999999999999999999999999999999999999999875422 45689999998
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q 006505 126 TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILD 205 (643)
Q Consensus 126 ~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlD 205 (643)
.+++..||+||+.+..... . ..++++++++.+++.+..+ +.++.||||||||++||++++.+|++++||
T Consensus 80 ~~~~~~tv~~~l~~~~~~~-~-----~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~~rl~la~al~~~p~~lllD 148 (195)
T PRK13541 80 GLKLEMTVFENLKFWSEIY-N-----SAETLYAAIHYFKLHDLLD-----EKCYSLSSGMQKIVAIARLIACQSDLWLLD 148 (195)
T ss_pred CCCccCCHHHHHHHHHHhc-c-----cHHHHHHHHHHcCCHhhhc-----cChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 8888899999998765332 1 2346788899999987663 467899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEE
Q 006505 206 EPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSIL 253 (643)
Q Consensus 206 EPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~ 253 (643)
|||+|||+.++..+.+.|++.++ .|+|+|++||+++. .+.+|-+.
T Consensus 149 EP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~~--i~~~~~~~ 193 (195)
T PRK13541 149 EVETNLSKENRDLLNNLIVMKAN-SGGIVLLSSHLESS--IKSAQILQ 193 (195)
T ss_pred CCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCccc--cchhheec
Confidence 99999999999999999987765 48999999999863 34567553
|
|
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=321.11 Aligned_cols=211 Identities=31% Similarity=0.461 Sum_probs=189.1
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc--hhhcccEEEEc-cCCCCCCCCCH
Q 006505 57 VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK--AQFRKVSGYVT-QRDTLFPLLTV 133 (643)
Q Consensus 57 ~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~--~~~~~~i~yv~-Q~~~l~~~lTv 133 (643)
...+++|+||+|++|++++++|||||||||+||+|+|++.|++|.|.++|.+.-. +.+-+.+++|+ |...+...+.+
T Consensus 36 ~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~ 115 (325)
T COG4586 36 SIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPA 115 (325)
T ss_pred hhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechh
Confidence 4568999999999999999999999999999999999999999999999987632 45667788877 55677777888
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Q 006505 134 EETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDS 213 (643)
Q Consensus 134 ~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~ 213 (643)
.|.+.....+. ..+.++..++.+.+.+.|+|+... +.+++.||-|||.|+.||.+|+++|++|||||||-|||.
T Consensus 116 ~ds~~v~~~Iy-~Ipd~~F~~r~~~l~eiLdl~~~l-----k~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV 189 (325)
T COG4586 116 LDSLEVLKLIY-EIPDDEFAERLDFLTEILDLEGFL-----KWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDV 189 (325)
T ss_pred hhhHHHHHHHH-hCCHHHHHHHHHHHHHHhcchhhh-----hhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcch
Confidence 88887655443 346788889999999999998776 447899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHHHHH
Q 006505 214 TSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSVSLR 274 (643)
Q Consensus 214 ~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~ 274 (643)
.++..+.+.|++..++++.||+.+||+.+ ++.++||||++|++|+++|+|+.+++.+.|.
T Consensus 190 ~aq~~ir~Flke~n~~~~aTVllTTH~~~-di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f~ 249 (325)
T COG4586 190 NAQANIREFLKEYNEERQATVLLTTHIFD-DIATLCDRVLLIDQGQLVFDGTLAQLQEQFG 249 (325)
T ss_pred hHHHHHHHHHHHHHHhhCceEEEEecchh-hHHHhhhheEEeeCCcEeecccHHHHHHHhC
Confidence 99999999999999999999999999998 5999999999999999999999999987764
|
|
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=307.63 Aligned_cols=219 Identities=29% Similarity=0.495 Sum_probs=196.4
Q ss_pred hhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECC-CcCCc----hhhcccE
Q 006505 44 ELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNG-SPIDK----AQFRKVS 118 (643)
Q Consensus 44 ~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g-~~~~~----~~~~~~i 118 (643)
.++.+++++.++++..+|+|+||++.+||+-+|+|||||||||+|++|+|..+|++|+|+++| .++.. .-.|..|
T Consensus 4 ~iL~~~~vsVsF~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GI 83 (249)
T COG4674 4 IILYLDGVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGI 83 (249)
T ss_pred ceEEEeceEEEEcceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhcc
Confidence 457789999999999999999999999999999999999999999999999999999999999 67654 2346678
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHH
Q 006505 119 GYVTQRDTLFPLLTVEETLMFSAKLRLRL-------PQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSI 191 (643)
Q Consensus 119 ~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~-------~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~i 191 (643)
|--+|.|..|+.+||+|||..+.....+. ...+.+++++++|...||.+.++. ....||.||||++.|
T Consensus 84 GRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~-----~A~~LSHGqKQwLEI 158 (249)
T COG4674 84 GRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDR-----LAALLSHGQKQWLEI 158 (249)
T ss_pred CccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhh-----hhhhhccchhhhhhh
Confidence 99999999999999999999986533221 234456789999999999988755 456899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 192 GFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 192 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
+.-++++|++|+||||++|+--....+.-++|+.++. +++|+++.||+.. +.+++|+|.+|++|.+...|+.+++.
T Consensus 159 GMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~--~hsilVVEHDM~F-vr~~A~~VTVlh~G~VL~EGsld~v~ 234 (249)
T COG4674 159 GMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG--KHSILVVEHDMGF-VREIADKVTVLHEGSVLAEGSLDEVQ 234 (249)
T ss_pred heeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc--CceEEEEeccHHH-HHHhhheeEEEeccceeecccHHHhh
Confidence 9999999999999999999999999999999999985 6899999999986 89999999999999999999998874
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=360.75 Aligned_cols=209 Identities=23% Similarity=0.344 Sum_probs=178.3
Q ss_pred hhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEccCC
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRD 125 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~ 125 (643)
++++|++++|+++++|+|+||++++||+++|+||||||||||||+|+|+.+|++|+|.++|. +.++|++|++
T Consensus 2 l~i~~ls~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~--------~~i~~~~q~~ 73 (530)
T PRK15064 2 LSTANITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN--------ERLGKLRQDQ 73 (530)
T ss_pred EEEEEEEEEeCCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC--------CEEEEEeccC
Confidence 46789999999889999999999999999999999999999999999999999999999873 3489999999
Q ss_pred CCCCCCCHHHHHHHHHH-hc-----------CCC---C----------------HHHHHHHHHHHHHHcCChhhhhhhcC
Q 006505 126 TLFPLLTVEETLMFSAK-LR-----------LRL---P----------------QAQLRARVKSLVKELGLEHVAMARVG 174 (643)
Q Consensus 126 ~l~~~lTv~E~l~~~~~-~~-----------~~~---~----------------~~~~~~~v~~~l~~lgl~~~~~~~vg 174 (643)
.+++.+||+|++.++.. .+ .+. . ..+.+++++++++.+|+.+..+
T Consensus 74 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~---- 149 (530)
T PRK15064 74 FAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQH---- 149 (530)
T ss_pred CcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHh----
Confidence 89999999999987531 00 000 0 0122457889999999975331
Q ss_pred CCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEE
Q 006505 175 DDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILM 254 (643)
Q Consensus 175 ~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~ 254 (643)
++.+.+|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++ .|.|||++|||++ .+.++||++++
T Consensus 150 ~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivsHd~~-~~~~~~d~i~~ 224 (530)
T PRK15064 150 YGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE----RNSTMIIISHDRH-FLNSVCTHMAD 224 (530)
T ss_pred cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh----CCCeEEEEeCCHH-HHHhhcceEEE
Confidence 235789999999999999999999999999999999999999999999863 4899999999997 48899999999
Q ss_pred EeCCeE-EEecChhHHHH
Q 006505 255 LANGSV-LHHGTVDLLSV 271 (643)
Q Consensus 255 L~~G~i-v~~G~~~~~~~ 271 (643)
|++|++ ++.|++++..+
T Consensus 225 l~~g~i~~~~g~~~~~~~ 242 (530)
T PRK15064 225 LDYGELRVYPGNYDEYMT 242 (530)
T ss_pred EeCCEEEEecCCHHHHHH
Confidence 999999 58898877643
|
|
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=318.18 Aligned_cols=195 Identities=19% Similarity=0.252 Sum_probs=162.5
Q ss_pred ceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEE-ECCCcCCchhhcccEEEEccCCCCCCCCCHHHHH
Q 006505 59 RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTF-VNGSPIDKAQFRKVSGYVTQRDTLFPLLTVEETL 137 (643)
Q Consensus 59 ~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~-~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l 137 (643)
++|+|||+++++||+++|+||||||||||+|+|+|+.+|++|+|. ++|... .+.+++.+++.+|++||+
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~----------~~~~~~~l~~~ltv~enl 70 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL----------PLGANSFILPGLTGEENA 70 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee----------ccccccccCCcCcHHHHH
Confidence 479999999999999999999999999999999999999999997 777543 123456788999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHH
Q 006505 138 MFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSAL 217 (643)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~ 217 (643)
.+..... +...++. .+.+.+.+++++..++ .+++||||||||++||++|+.+|++++|||||+++|+.++.
T Consensus 71 ~~~~~~~-~~~~~~~---~~~~~~~~~l~~~~~~-----~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~ 141 (213)
T PRK15177 71 RMMASLY-GLDGDEF---SHFCYQLTQLEQCYTD-----RVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQL 141 (213)
T ss_pred HHHHHHc-CCCHHHH---HHHHHHHhChhHHhhc-----hHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHH
Confidence 9876543 2222222 2334456677766544 56799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHHHHHH
Q 006505 218 QIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSVSLRM 275 (643)
Q Consensus 218 ~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~ 275 (643)
.+.+.|.+..+ ++|+|++||+++ .+.+++|++++|++|++++.|+.+++.++++.
T Consensus 142 ~~~~~l~~~~~--~~~ii~vsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~ 196 (213)
T PRK15177 142 RMQAALACQLQ--QKGLIVLTHNPR-LIKEHCHAFGVLLHGKITMCEDLAQATALFEQ 196 (213)
T ss_pred HHHHHHHHHhh--CCcEEEEECCHH-HHHHhcCeeEEEECCeEEEeCCHHHHHHHHHH
Confidence 99998866543 468999999997 47789999999999999999999998776553
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-39 Score=358.27 Aligned_cols=214 Identities=20% Similarity=0.374 Sum_probs=179.6
Q ss_pred hhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc----hhhcccEE
Q 006505 44 ELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK----AQFRKVSG 119 (643)
Q Consensus 44 ~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~----~~~~~~i~ 119 (643)
++++++|+++++ +.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++.. ...++.++
T Consensus 249 ~~i~~~~l~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~ 326 (491)
T PRK10982 249 VILEVRNLTSLR--QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFA 326 (491)
T ss_pred cEEEEeCccccc--CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCE
Confidence 467888988773 569999999999999999999999999999999999999999999999988743 12356699
Q ss_pred EEccCC---CCCCCCCHHHHHHHH-----HHhcCC-CCHHHHHHHHHHHHHHcCCh-hhhhhhcCCCcCCCCCHHHHHHH
Q 006505 120 YVTQRD---TLFPLLTVEETLMFS-----AKLRLR-LPQAQLRARVKSLVKELGLE-HVAMARVGDDRVRGISGGERRRV 189 (643)
Q Consensus 120 yv~Q~~---~l~~~lTv~E~l~~~-----~~~~~~-~~~~~~~~~v~~~l~~lgl~-~~~~~~vg~~~~~~LSGGerqRv 189 (643)
|++|++ .+++.+|+.+|..+. ... .+ ...+..+++++++++.+++. +.. ++++.+|||||||||
T Consensus 327 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~LSgGq~qrv 400 (491)
T PRK10982 327 LVTEERRSTGIYAYLDIGFNSLISNIRNYKNK-VGLLDNSRMKSDTQWVIDSMRVKTPGH-----RTQIGSLSGGNQQKV 400 (491)
T ss_pred EcCCchhhCCcccCCcHHHheehhhhhhhccc-ccccCcHHHHHHHHHHHHhcCccCCCc-----ccccccCCcHHHHHH
Confidence 999985 468888888774321 111 01 12234456788999999985 333 457789999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChh
Q 006505 190 SIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVD 267 (643)
Q Consensus 190 ~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 267 (643)
+||++|+.+|++|||||||+|||+.++..+++.|++++++ |.|||++|||++ ++.++||++++|++|+++..++.+
T Consensus 401 ~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~-~~tvi~vsHd~~-~~~~~~d~v~~l~~g~i~~~~~~~ 476 (491)
T PRK10982 401 IIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKK-DKGIIIISSEMP-ELLGITDRILVMSNGLVAGIVDTK 476 (491)
T ss_pred HHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHC-CCEEEEECCChH-HHHhhCCEEEEEECCEEEEEEccc
Confidence 9999999999999999999999999999999999999875 999999999997 588999999999999999877553
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=328.78 Aligned_cols=223 Identities=26% Similarity=0.408 Sum_probs=198.6
Q ss_pred hhhhhccccccccc-----------ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc
Q 006505 43 EELSKLEEAADSDG-----------VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK 111 (643)
Q Consensus 43 ~~~~~~~~~~~~~~-----------~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~ 111 (643)
..+++.+++...|. ...++++||+++++||-++|+|.||||||||-.+|.+++++. |+|.++|++++.
T Consensus 274 ~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~ 352 (534)
T COG4172 274 PVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDG 352 (534)
T ss_pred CceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccc
Confidence 34566777665552 246899999999999999999999999999999999998775 999999999853
Q ss_pred ------hhhcccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCC
Q 006505 112 ------AQFRKVSGYVTQRD--TLFPLLTVEETLMFSAKLRLRL-PQAQLRARVKSLVKELGLEHVAMARVGDDRVRGIS 182 (643)
Q Consensus 112 ------~~~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~~~~~~-~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LS 182 (643)
..+|+++-.|+||+ .|-|.+||.|-+.-+.....+. +.+++++++.+.|+++||+... -+++|.+.|
T Consensus 353 ~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~----r~RYPhEFS 428 (534)
T COG4172 353 LSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPAT----RNRYPHEFS 428 (534)
T ss_pred cChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhH----hhcCCcccC
Confidence 34678899999997 5899999999999998877643 7888999999999999997532 166999999
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEE
Q 006505 183 GGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLH 262 (643)
Q Consensus 183 GGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~ 262 (643)
||||||++||||++.+|++++||||||+||-.-+.+++++|+++.++.|.+-+++|||+. -+..+||+|+||++|+||+
T Consensus 429 GGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~-VvrAl~~~viVm~~GkiVE 507 (534)
T COG4172 429 GGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLA-VVRALCHRVIVMRDGKIVE 507 (534)
T ss_pred cchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHHhhceEEEEeCCEEee
Confidence 999999999999999999999999999999999999999999999999999999999997 4888999999999999999
Q ss_pred ecChhHHHH
Q 006505 263 HGTVDLLSV 271 (643)
Q Consensus 263 ~G~~~~~~~ 271 (643)
+|+.+++.+
T Consensus 508 ~G~~~~if~ 516 (534)
T COG4172 508 QGPTEAVFA 516 (534)
T ss_pred eCCHHHHhc
Confidence 999998753
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-39 Score=359.57 Aligned_cols=216 Identities=23% Similarity=0.317 Sum_probs=177.9
Q ss_pred hhhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCC-CccEEEECCCcCCc----hhhccc
Q 006505 43 EELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTP-QSGSTFVNGSPIDK----AQFRKV 117 (643)
Q Consensus 43 ~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~-~~G~I~~~g~~~~~----~~~~~~ 117 (643)
.++++++|++++|+++.+|+|+||++++||+++|+||||||||||+|+|+|+.++ ++|+|+++|+++.. ...++.
T Consensus 258 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 337 (490)
T PRK10938 258 EPRIVLNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKH 337 (490)
T ss_pred CceEEEeceEEEECCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhh
Confidence 3468899999999888899999999999999999999999999999999998775 69999999987532 234567
Q ss_pred EEEEccCCCCCC--CCCHHHHHHHHHHh--cC-CCCHHHHHHHHHHHHHHcCChh-hhhhhcCCCcCCCCCHHHHHHHHH
Q 006505 118 SGYVTQRDTLFP--LLTVEETLMFSAKL--RL-RLPQAQLRARVKSLVKELGLEH-VAMARVGDDRVRGISGGERRRVSI 191 (643)
Q Consensus 118 i~yv~Q~~~l~~--~lTv~E~l~~~~~~--~~-~~~~~~~~~~v~~~l~~lgl~~-~~~~~vg~~~~~~LSGGerqRv~i 191 (643)
++|++|++.++. ..|++|++.+.... .. ....++.+++++++++.+|+.+ .. ++++.+|||||||||+|
T Consensus 338 i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~LSgGq~qrv~l 412 (490)
T PRK10938 338 IGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTA-----DAPFHSLSWGQQRLALI 412 (490)
T ss_pred ceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhc-----cCchhhCCHHHHHHHHH
Confidence 999999876543 35777776543211 00 1112233567899999999986 55 44678999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHh-hcCEEEEEeCCeEEEec
Q 006505 192 GFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVK-MFNSILMLANGSVLHHG 264 (643)
Q Consensus 192 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~-~~D~v~~L~~G~iv~~G 264 (643)
|++|+.+|++|||||||+|||+.++..+.+.|++++++.+.|||++|||++ ++.+ ++|++++|++|++++.-
T Consensus 413 a~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~-~~~~~~~d~v~~l~~G~i~~~~ 485 (490)
T PRK10938 413 VRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAE-DAPACITHRLEFVPDGDIYRYV 485 (490)
T ss_pred HHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchh-hhhhhhheeEEEecCCceEEee
Confidence 999999999999999999999999999999999998753457999999997 4766 58999999999987754
|
|
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-38 Score=306.21 Aligned_cols=228 Identities=26% Similarity=0.377 Sum_probs=199.6
Q ss_pred hhhccccccccccc-ceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCC--CCCccEEEECCCcCCc----hhhccc
Q 006505 45 LSKLEEAADSDGVR-RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKL--TPQSGSTFVNGSPIDK----AQFRKV 117 (643)
Q Consensus 45 ~~~~~~~~~~~~~~-~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~--~~~~G~I~~~g~~~~~----~~~~~~ 117 (643)
+++++|++.+-+.+ .||++||++|++||+.+||||||||||||.++|+|.- ++++|+|.++|+++.. ++.|+-
T Consensus 3 ~L~I~dLhv~v~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~G 82 (251)
T COG0396 3 MLEIKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAG 82 (251)
T ss_pred eeEEeeeEEEecCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcC
Confidence 46788998888884 9999999999999999999999999999999999985 5679999999999854 456777
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHHcCChh-hhhhhcCCCcCCCCCHHHHHHHHHHHH
Q 006505 118 SGYVTQRDTLFPLLTVEETLMFSAKLRLRLP--QAQLRARVKSLVKELGLEH-VAMARVGDDRVRGISGGERRRVSIGFD 194 (643)
Q Consensus 118 i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~--~~~~~~~v~~~l~~lgl~~-~~~~~vg~~~~~~LSGGerqRv~ia~a 194 (643)
+...+|.|.=+|..|+.+.|..+...+.+.. ..+..+++++.++.++++. ..++.+. .++|||||||.-|+..
T Consensus 83 ifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN----~GFSGGEkKR~EilQ~ 158 (251)
T COG0396 83 IFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVN----EGFSGGEKKRNEILQL 158 (251)
T ss_pred CEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccC----CCcCcchHHHHHHHHH
Confidence 8899999999999999999998776533221 2356678899999999986 4544332 4899999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhc--CEEEEEeCCeEEEecChhHHHHH
Q 006505 195 VIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMF--NSILMLANGSVLHHGTVDLLSVS 272 (643)
Q Consensus 195 L~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~--D~v~~L~~G~iv~~G~~~~~~~~ 272 (643)
++.+|++.+||||-||||..+-..+.+.+++++.+ |.+++++||.. .+.++. |+|.+|.+|+|+..|.+ ++.++
T Consensus 159 ~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~-~~~~liITHy~--rll~~i~pD~vhvl~~GrIv~sG~~-el~~~ 234 (251)
T COG0396 159 LLLEPKLAILDEPDSGLDIDALKIVAEGINALREE-GRGVLIITHYQ--RLLDYIKPDKVHVLYDGRIVKSGDP-ELAEE 234 (251)
T ss_pred HhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcC-CCeEEEEecHH--HHHhhcCCCEEEEEECCEEEecCCH-HHHHH
Confidence 99999999999999999999999999999999875 99999999996 477776 99999999999999999 89999
Q ss_pred HHHcCCCC
Q 006505 273 LRMMGLQL 280 (643)
Q Consensus 273 f~~~g~~~ 280 (643)
++..||.|
T Consensus 235 le~~gy~~ 242 (251)
T COG0396 235 LEEKGYDW 242 (251)
T ss_pred HHHhchHH
Confidence 99999864
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-38 Score=327.78 Aligned_cols=203 Identities=28% Similarity=0.389 Sum_probs=167.0
Q ss_pred hhhhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEE
Q 006505 42 QEELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYV 121 (643)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv 121 (643)
..+.++++++++. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|+
T Consensus 36 ~~~~l~i~nls~~--~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g----------~i~yv 103 (282)
T cd03291 36 DDNNLFFSNLCLV--GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG----------RISFS 103 (282)
T ss_pred CCCeEEEEEEEEe--cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC----------EEEEE
Confidence 3345678888775 46799999999999999999999999999999999999999999999988 38999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhh-------hcCCCcCCCCCHHHHHHHHHHHH
Q 006505 122 TQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMA-------RVGDDRVRGISGGERRRVSIGFD 194 (643)
Q Consensus 122 ~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~-------~vg~~~~~~LSGGerqRv~ia~a 194 (643)
+|++.+++. ||+||+.+.... .. .++.+.++.+++.+..+. .+ +..+..||||||||++||++
T Consensus 104 ~q~~~l~~~-tv~enl~~~~~~----~~----~~~~~~l~~~~l~~~l~~~~~~~~~~~-~~~~~~LSgGq~qrv~lAra 173 (282)
T cd03291 104 SQFSWIMPG-TIKENIIFGVSY----DE----YRYKSVVKACQLEEDITKFPEKDNTVL-GEGGITLSGGQRARISLARA 173 (282)
T ss_pred eCccccccc-CHHHHhhccccc----CH----HHHHHHHHHhCCHHHHHhcccccccee-cCCCCcCCHHHHHHHHHHHH
Confidence 999988885 999999864321 11 123344555555443322 11 23467999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 195 VIHDPKVLILDEPTSGLDSTSALQIIDML-KVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 195 L~~~p~illlDEPtsgLD~~~~~~i~~~L-~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
|+.+|++++|||||+|||+.++..+.+.+ ++++ + +.|||++||+++. + ..+|++++|++|++++.|+++++.
T Consensus 174 L~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~-~~tIiiisH~~~~-~-~~~d~i~~l~~G~i~~~g~~~~~~ 246 (282)
T cd03291 174 VYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM-A-NKTRILVTSKMEH-L-KKADKILILHEGSSYFYGTFSELQ 246 (282)
T ss_pred HhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-C-CCEEEEEeCChHH-H-HhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999865 5554 3 7999999999974 4 689999999999999999988764
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-38 Score=321.22 Aligned_cols=190 Identities=24% Similarity=0.311 Sum_probs=158.9
Q ss_pred eeeceEEEEe-----cCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEccCCCCCCCCCHH
Q 006505 60 VLDGVSCKAK-----PWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTVE 134 (643)
Q Consensus 60 iL~~vs~~i~-----~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~ 134 (643)
.++|++++++ +||+++|+||||||||||+++|+|+.+|++|+|.++|+ .++|++|+....+.+||+
T Consensus 9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~---------~i~~~~q~~~~~~~~tv~ 79 (246)
T cd03237 9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD---------TVSYKPQYIKADYEGTVR 79 (246)
T ss_pred ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc---------eEEEecccccCCCCCCHH
Confidence 5566666665 79999999999999999999999999999999999985 589999998777778999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q 006505 135 ETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDST 214 (643)
Q Consensus 135 E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~ 214 (643)
|++.+...... . ..+..+++++.+++.+..+ +.+.+|||||||||+||++|+.+|++++|||||++||+.
T Consensus 80 e~l~~~~~~~~--~---~~~~~~~~l~~l~l~~~~~-----~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~ 149 (246)
T cd03237 80 DLLSSITKDFY--T---HPYFKTEIAKPLQIEQILD-----REVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVE 149 (246)
T ss_pred HHHHHHhhhcc--c---cHHHHHHHHHHcCCHHHhh-----CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 99976433111 1 1234678899999987664 466799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEE--EecChhHH
Q 006505 215 SALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVL--HHGTVDLL 269 (643)
Q Consensus 215 ~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv--~~G~~~~~ 269 (643)
++..+.+.|++++++.|+|||++||+++ .+..++|++++|+++..+ ..+++.++
T Consensus 150 ~~~~l~~~l~~~~~~~~~tiiivsHd~~-~~~~~~d~i~~l~~~~~~~~~~~~~~~~ 205 (246)
T cd03237 150 QRLMASKVIRRFAENNEKTAFVVEHDII-MIDYLADRLIVFEGEPSVNGVANPPQSL 205 (246)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEcCCCeeEEEeCCchHH
Confidence 9999999999998766899999999997 477899999999764333 33455443
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-39 Score=396.69 Aligned_cols=215 Identities=26% Similarity=0.393 Sum_probs=184.7
Q ss_pred hhccccccccc---ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCC-------------------------
Q 006505 46 SKLEEAADSDG---VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTP------------------------- 97 (643)
Q Consensus 46 ~~~~~~~~~~~---~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~------------------------- 97 (643)
+++++++.+|. ++++|+|+|++++||+.+||+||||||||||+++|.|+++|
T Consensus 1166 I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~ 1245 (1466)
T PTZ00265 1166 IEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGD 1245 (1466)
T ss_pred EEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccc
Confidence 67889999995 35799999999999999999999999999999999999998
Q ss_pred -----------------------------CccEEEECCCcCCc---hhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcC
Q 006505 98 -----------------------------QSGSTFVNGSPIDK---AQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRL 145 (643)
Q Consensus 98 -----------------------------~~G~I~~~g~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~ 145 (643)
++|+|++||.++.. ..+|+.+|||+|++.+|+. |++|||.++..
T Consensus 1246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~g-TIreNI~~g~~--- 1321 (1466)
T PTZ00265 1246 EEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNM-SIYENIKFGKE--- 1321 (1466)
T ss_pred cccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccc-cHHHHHhcCCC---
Confidence 59999999998743 6789999999999999986 99999998621
Q ss_pred CCCHHHHHHHHHHHHHHcCChh-------hhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHH
Q 006505 146 RLPQAQLRARVKSLVKELGLEH-------VAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQ 218 (643)
Q Consensus 146 ~~~~~~~~~~v~~~l~~lgl~~-------~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~ 218 (643)
..+. +.++++++..++.+ -.||.+| +....||||||||++|||||+++|+|||||||||+||+.+...
T Consensus 1322 ~at~----eeI~~A~k~A~l~~fI~~LP~GydT~VG-e~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~ 1396 (1466)
T PTZ00265 1322 DATR----EDVKRACKFAAIDEFIESLPNKYDTNVG-PYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKL 1396 (1466)
T ss_pred CCCH----HHHHHHHHHcCCHHHHHhCccccCCccC-CCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHH
Confidence 1122 34666666666543 3477786 4567899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeC----CeEE-EecChhHHHH
Q 006505 219 IIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLAN----GSVL-HHGTVDLLSV 271 (643)
Q Consensus 219 i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~----G~iv-~~G~~~~~~~ 271 (643)
|.+.|+++++..++|+|+++|+++ ..+.||+|++|++ |+++ +.|+++++.+
T Consensus 1397 I~~~L~~~~~~~~~TvIiIaHRls--ti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1397 IEKTIVDIKDKADKTIITIAHRIA--SIKRSDKIVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred HHHHHHHHhccCCCEEEEEechHH--HHHhCCEEEEEeCCCCCCCEEEEecCHHHHHh
Confidence 999999986334899999999985 4678999999999 9955 8999998863
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-38 Score=358.66 Aligned_cols=208 Identities=26% Similarity=0.340 Sum_probs=178.0
Q ss_pred hhhhccccccccc-ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEc
Q 006505 44 ELSKLEEAADSDG-VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVT 122 (643)
Q Consensus 44 ~~~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~ 122 (643)
++++++|++++|+ ++++|+|+||+|++||+++|+||||||||||||+|+|+.+|++|+|.+++. ..+|||+
T Consensus 5 ~~l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~--------~~i~~v~ 76 (556)
T PRK11819 5 YIYTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPG--------IKVGYLP 76 (556)
T ss_pred EEEEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC--------CEEEEEe
Confidence 4678999999998 789999999999999999999999999999999999999999999999752 3599999
Q ss_pred cCCCCCCCCCHHHHHHHHHH-hc------------CCCCH----------------------HHHHHHHHHHHHHcCChh
Q 006505 123 QRDTLFPLLTVEETLMFSAK-LR------------LRLPQ----------------------AQLRARVKSLVKELGLEH 167 (643)
Q Consensus 123 Q~~~l~~~lTv~E~l~~~~~-~~------------~~~~~----------------------~~~~~~v~~~l~~lgl~~ 167 (643)
|++.+++.+||.||+.++.. .+ ..... .+.+++++++++.+|+..
T Consensus 77 Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~ 156 (556)
T PRK11819 77 QEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPP 156 (556)
T ss_pred cCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCc
Confidence 99999999999999987531 00 00000 012456788999999953
Q ss_pred hhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHh
Q 006505 168 VAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVK 247 (643)
Q Consensus 168 ~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~ 247 (643)
. ++++.+|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++ +.|||++|||++ .+.+
T Consensus 157 -~-----~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~----~~tviiisHd~~-~~~~ 225 (556)
T PRK11819 157 -W-----DAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY----PGTVVAVTHDRY-FLDN 225 (556)
T ss_pred -c-----cCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC----CCeEEEEeCCHH-HHHh
Confidence 3 4467899999999999999999999999999999999999999999999876 249999999997 4888
Q ss_pred hcCEEEEEeCCeEE-EecChhHHH
Q 006505 248 MFNSILMLANGSVL-HHGTVDLLS 270 (643)
Q Consensus 248 ~~D~v~~L~~G~iv-~~G~~~~~~ 270 (643)
.+|+|++|++|+++ +.|+.++..
T Consensus 226 ~~d~i~~l~~g~i~~~~g~~~~~~ 249 (556)
T PRK11819 226 VAGWILELDRGRGIPWEGNYSSWL 249 (556)
T ss_pred hcCeEEEEeCCEEEEecCCHHHHH
Confidence 99999999999986 888877643
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-38 Score=303.12 Aligned_cols=161 Identities=35% Similarity=0.462 Sum_probs=144.1
Q ss_pred hccccccccc-ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEccCC
Q 006505 47 KLEEAADSDG-VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRD 125 (643)
Q Consensus 47 ~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~ 125 (643)
++++++++|+ .+++|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|. +.++|++|++
T Consensus 2 ~~~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~--------~~i~~~~q~~ 73 (166)
T cd03223 2 ELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG--------EDLLFLPQRP 73 (166)
T ss_pred EEEEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC--------ceEEEECCCC
Confidence 3677888885 467999999999999999999999999999999999999999999999873 5699999998
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q 006505 126 TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILD 205 (643)
Q Consensus 126 ~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlD 205 (643)
.++ ..|++||+.+. .+..||||||||++||++|+.+|++++||
T Consensus 74 ~~~-~~tv~~nl~~~------------------------------------~~~~LS~G~~~rv~laral~~~p~~lllD 116 (166)
T cd03223 74 YLP-LGTLREQLIYP------------------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLD 116 (166)
T ss_pred ccc-cccHHHHhhcc------------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 765 56999998642 13589999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCC
Q 006505 206 EPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANG 258 (643)
Q Consensus 206 EPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 258 (643)
|||+|||+.++..+.+.|+++ ++|+|++||+++ ..+.+|++++|++|
T Consensus 117 EPt~~LD~~~~~~l~~~l~~~----~~tiiivsh~~~--~~~~~d~i~~l~~~ 163 (166)
T cd03223 117 EATSALDEESEDRLYQLLKEL----GITVISVGHRPS--LWKFHDRVLDLDGE 163 (166)
T ss_pred CCccccCHHHHHHHHHHHHHh----CCEEEEEeCChh--HHhhCCEEEEEcCC
Confidence 999999999999999999875 589999999986 35799999999875
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-39 Score=361.32 Aligned_cols=185 Identities=30% Similarity=0.475 Sum_probs=161.1
Q ss_pred hhcccccccccc-cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCC--chhhcccEEEEc
Q 006505 46 SKLEEAADSDGV-RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPID--KAQFRKVSGYVT 122 (643)
Q Consensus 46 ~~~~~~~~~~~~-~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~--~~~~~~~i~yv~ 122 (643)
++++|++.+|++ +++|+|+|+++++||.+||+||||||||||+|+|+|+++|++|+|.+||.++. ...+|+.++|||
T Consensus 335 I~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~ 414 (529)
T TIGR02868 335 LELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFA 414 (529)
T ss_pred EEEEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEc
Confidence 678999999965 56999999999999999999999999999999999999999999999998765 356788999999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhh-------hhhhcCCCcCCCCCHHHHHHHHHHHHH
Q 006505 123 QRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHV-------AMARVGDDRVRGISGGERRRVSIGFDV 195 (643)
Q Consensus 123 Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~-------~~~~vg~~~~~~LSGGerqRv~ia~aL 195 (643)
|++.+|+. |++|||.++. +. ..++++.++++..++++. .||.+|+ ....||||||||++|||||
T Consensus 415 Q~~~lF~~-TI~eNI~~g~----~~---~~~e~i~~al~~a~l~~~i~~lp~GldT~ige-~G~~LSGGQrQRiaiARal 485 (529)
T TIGR02868 415 QDAHLFDT-TVRDNLRLGR----PD---ATDEELWAALERVGLADWLRSLPDGLDTVLGE-GGARLSGGERQRLALARAL 485 (529)
T ss_pred cCcccccc-cHHHHHhccC----CC---CCHHHHHHHHHHcCCHHHHHhCcccccchhcc-ccCcCCHHHHHHHHHHHHH
Confidence 99999997 9999998752 11 123456778888777643 3677764 5568999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q 006505 196 IHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQP 241 (643)
Q Consensus 196 ~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~ 241 (643)
+++|++|+||||||+||+.+...+.+.|+++. .++|+|+++|++
T Consensus 486 l~~~~iliLDE~TSaLD~~te~~I~~~l~~~~--~~~TvIiItHrl 529 (529)
T TIGR02868 486 LADAPILLLDEPTEHLDAGTESELLEDLLAAL--SGKTVVVITHHL 529 (529)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc--CCCEEEEEecCC
Confidence 99999999999999999999999999999874 379999999985
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-38 Score=356.42 Aligned_cols=203 Identities=24% Similarity=0.321 Sum_probs=177.0
Q ss_pred hhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEcc
Q 006505 44 ELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQ 123 (643)
Q Consensus 44 ~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q 123 (643)
+++++++++++|+++.+|+|+|+++++||+++|+||||||||||||+|+|+.+|++|+|.++|+ +.+||++|
T Consensus 318 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~--------~~i~~~~q 389 (530)
T PRK15064 318 NALEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN--------ANIGYYAQ 389 (530)
T ss_pred ceEEEEeeEEeeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc--------eEEEEEcc
Confidence 4688999999999889999999999999999999999999999999999999999999999873 45999999
Q ss_pred CCC--CCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCh-hhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCC
Q 006505 124 RDT--LFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLE-HVAMARVGDDRVRGISGGERRRVSIGFDVIHDPK 200 (643)
Q Consensus 124 ~~~--l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~-~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~ 200 (643)
++. +++.+|++|++.+... . ...+++++++++.+|+. +.. +.++.+||||||||++||++|+.+|+
T Consensus 390 ~~~~~~~~~~t~~~~~~~~~~---~---~~~~~~~~~~l~~~~l~~~~~-----~~~~~~LSgGq~qrv~la~al~~~p~ 458 (530)
T PRK15064 390 DHAYDFENDLTLFDWMSQWRQ---E---GDDEQAVRGTLGRLLFSQDDI-----KKSVKVLSGGEKGRMLFGKLMMQKPN 458 (530)
T ss_pred cccccCCCCCcHHHHHHHhcc---C---CccHHHHHHHHHHcCCChhHh-----cCcccccCHHHHHHHHHHHHHhcCCC
Confidence 864 5667999999864211 1 11235688999999994 444 45778999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEE-EecChhHHH
Q 006505 201 VLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVL-HHGTVDLLS 270 (643)
Q Consensus 201 illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv-~~G~~~~~~ 270 (643)
+|||||||+|||+.++..+.+.|+++ +.|||++|||++ .+.++||++++|++|+++ +.|++++..
T Consensus 459 lllLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~-~~~~~~d~i~~l~~g~i~~~~g~~~~~~ 524 (530)
T PRK15064 459 VLVMDEPTNHMDMESIESLNMALEKY----EGTLIFVSHDRE-FVSSLATRIIEITPDGVVDFSGTYEEYL 524 (530)
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHC----CCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEcCCCHHHHH
Confidence 99999999999999999999999875 359999999997 588899999999999998 889887654
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-38 Score=358.24 Aligned_cols=203 Identities=21% Similarity=0.312 Sum_probs=173.9
Q ss_pred hhhcccccccccc-cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEEE
Q 006505 45 LSKLEEAADSDGV-RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGY 120 (643)
Q Consensus 45 ~~~~~~~~~~~~~-~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~y 120 (643)
.++++|++.+|++ +++|+|+|+++++||.+||+||||||||||+++|+|+++|++|+|.+||+++.. ..+++.++|
T Consensus 322 ~i~~~~v~f~y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 401 (547)
T PRK10522 322 TLELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSA 401 (547)
T ss_pred eEEEEEEEEEeCCCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEE
Confidence 3678999999964 569999999999999999999999999999999999999999999999998753 467889999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCC--cCCCCCHHHHHHHHHHHHHhcC
Q 006505 121 VTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDD--RVRGISGGERRRVSIGFDVIHD 198 (643)
Q Consensus 121 v~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~--~~~~LSGGerqRv~ia~aL~~~ 198 (643)
|+|++.+|+. |++|| . + +..++.+++.++.+++.+..+. ++. ....||||||||++||||++++
T Consensus 402 v~q~~~lf~~-ti~~n---~-----~---~~~~~~~~~~~~~~~l~~~~~~--~~~~~~G~~LSgGq~qRl~lARal~~~ 467 (547)
T PRK10522 402 VFTDFHLFDQ-LLGPE---G-----K---PANPALVEKWLERLKMAHKLEL--EDGRISNLKLSKGQKKRLALLLALAEE 467 (547)
T ss_pred EecChhHHHH-hhccc---c-----C---chHHHHHHHHHHHcCCchhhhc--cccCCCCCCCCHHHHHHHHHHHHHhcC
Confidence 9999998886 88887 1 1 1223467788999998764432 222 2468999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEe
Q 006505 199 PKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHH 263 (643)
Q Consensus 199 p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 263 (643)
|++|+||||||+||+.++..+.+.|.+..++.|+|+|+++|+++ ..+.+|++++|++|++++.
T Consensus 468 ~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~--~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 468 RDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDH--YFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechH--HHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999998765435899999999985 5688999999999999876
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-38 Score=356.61 Aligned_cols=208 Identities=27% Similarity=0.340 Sum_probs=174.9
Q ss_pred hhhccccccccc-ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEcc
Q 006505 45 LSKLEEAADSDG-VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQ 123 (643)
Q Consensus 45 ~~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q 123 (643)
+++++|++++|+ .+++|+|+|+++++||+++|+|||||||||||++|+|+.+|++|+|.+++. ..+|||+|
T Consensus 4 ~i~~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~--------~~i~~v~Q 75 (552)
T TIGR03719 4 IYTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPG--------IKVGYLPQ 75 (552)
T ss_pred EEEEeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC--------CEEEEEec
Confidence 567899999997 788999999999999999999999999999999999999999999999752 45999999
Q ss_pred CCCCCCCCCHHHHHHHHHHh-c------------CCCCHHH----------------------HHHHHHHHHHHcCChhh
Q 006505 124 RDTLFPLLTVEETLMFSAKL-R------------LRLPQAQ----------------------LRARVKSLVKELGLEHV 168 (643)
Q Consensus 124 ~~~l~~~lTv~E~l~~~~~~-~------------~~~~~~~----------------------~~~~v~~~l~~lgl~~~ 168 (643)
++.+++.+||+||+.++... + ...+.++ ..++++++++.+|+..
T Consensus 76 ~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~- 154 (552)
T TIGR03719 76 EPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPP- 154 (552)
T ss_pred cCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCc-
Confidence 99999999999999875321 0 0001010 1234566777777742
Q ss_pred hhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhh
Q 006505 169 AMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKM 248 (643)
Q Consensus 169 ~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~ 248 (643)
. +.++..|||||||||+||++|+.+|++|||||||++||+.++..+.+.|+++ +.|||++|||++ .+..+
T Consensus 155 ~-----~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~----~~tvIiisHd~~-~~~~~ 224 (552)
T TIGR03719 155 W-----DADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY----PGTVVAVTHDRY-FLDNV 224 (552)
T ss_pred c-----cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC----CCeEEEEeCCHH-HHHhh
Confidence 2 4567899999999999999999999999999999999999999999999865 359999999997 48889
Q ss_pred cCEEEEEeCCeEE-EecChhHHHH
Q 006505 249 FNSILMLANGSVL-HHGTVDLLSV 271 (643)
Q Consensus 249 ~D~v~~L~~G~iv-~~G~~~~~~~ 271 (643)
+|++++|++|+++ +.|+.++..+
T Consensus 225 ~d~v~~l~~g~i~~~~g~~~~~~~ 248 (552)
T TIGR03719 225 AGWILELDRGRGIPWEGNYSSWLE 248 (552)
T ss_pred cCeEEEEECCEEEEecCCHHHHHH
Confidence 9999999999976 7898876543
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-38 Score=315.70 Aligned_cols=187 Identities=29% Similarity=0.439 Sum_probs=165.6
Q ss_pred hhhcccccccccc---------cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhc
Q 006505 45 LSKLEEAADSDGV---------RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFR 115 (643)
Q Consensus 45 ~~~~~~~~~~~~~---------~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~ 115 (643)
+++++|+.+.|.. ..+++||||++++||.++|+|.||||||||-|+|.|+.+|++|+|+++|+++....
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-- 81 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-- 81 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc--
Confidence 3456666655532 37999999999999999999999999999999999999999999999999864321
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHH
Q 006505 116 KVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDV 195 (643)
Q Consensus 116 ~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL 195 (643)
+++..+++.++|+.+|+.... .+++++++|||||||++|||||
T Consensus 82 ---------------------------------~~~~~~~v~elL~~Vgl~~~~----~~ryPhelSGGQrQRi~IARAL 124 (268)
T COG4608 82 ---------------------------------KEERRERVLELLEKVGLPEEF----LYRYPHELSGGQRQRIGIARAL 124 (268)
T ss_pred ---------------------------------hhHHHHHHHHHHHHhCCCHHH----hhcCCcccCchhhhhHHHHHHH
Confidence 344567899999999986421 2568999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 196 IHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 196 ~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
+.+|+++++|||||.||...+.++.++|+++.++.|.|.++++||.+. +..++|||.+|..|++++.|+.+++..
T Consensus 125 al~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~v-v~~isdri~VMy~G~iVE~g~~~~~~~ 199 (268)
T COG4608 125 ALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSV-VRYISDRIAVMYLGKIVEIGPTEEVFS 199 (268)
T ss_pred hhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHh-hhhhcccEEEEecCceeEecCHHHHhh
Confidence 999999999999999999999999999999999999999999999984 888999999999999999999998853
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=358.51 Aligned_cols=198 Identities=31% Similarity=0.511 Sum_probs=170.5
Q ss_pred hhhcccccccccc--cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEE
Q 006505 45 LSKLEEAADSDGV--RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSG 119 (643)
Q Consensus 45 ~~~~~~~~~~~~~--~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~ 119 (643)
.++++|++.+|++ +++|+|+|++++|||.++|+||||||||||+|+|+|+++|++|+|.+||.++.+ ..+|+.++
T Consensus 320 ~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~ 399 (529)
T TIGR02857 320 SLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIA 399 (529)
T ss_pred eEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheE
Confidence 3678999999965 469999999999999999999999999999999999999999999999998743 56789999
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhh-------hhhhcCCCcCCCCCHHHHHHHHHH
Q 006505 120 YVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHV-------AMARVGDDRVRGISGGERRRVSIG 192 (643)
Q Consensus 120 yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~-------~~~~vg~~~~~~LSGGerqRv~ia 192 (643)
||+|++.+|+. |++||+.++.. ..+ ++++.+.++..++.+. .||.+|+ ....||||||||++||
T Consensus 400 ~v~Q~~~lf~~-ti~~Ni~~~~~---~~~----~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e-~g~~LSgGq~qri~la 470 (529)
T TIGR02857 400 WVPQHPFLFAG-TIAENIRLARP---DAS----DAEIRRALERAGLDEFVAALPQGLDTLIGE-GGAGLSGGQAQRLALA 470 (529)
T ss_pred EEcCCCcccCc-CHHHHHhccCC---CCC----HHHHHHHHHHcCcHHHHHhCcccccchhcc-ccccCCHHHHHHHHHH
Confidence 99999999986 99999987531 112 2456677777777543 3556643 5678999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEE
Q 006505 193 FDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILML 255 (643)
Q Consensus 193 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L 255 (643)
|||+++|++++||||||+||+.++..+.+.|+++. .++|+|+++|+++ ..+.+|+|++|
T Consensus 471 Ral~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~--~~~~~d~i~~l 529 (529)
T TIGR02857 471 RAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA--QGRTVLLVTHRLA--LAERADRIVVL 529 (529)
T ss_pred HHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc--CCCEEEEEecCHH--HHHhCCEEEeC
Confidence 99999999999999999999999999999999885 3899999999985 45789999875
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-38 Score=391.10 Aligned_cols=213 Identities=24% Similarity=0.313 Sum_probs=184.6
Q ss_pred hhhcccccccccc--cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEE
Q 006505 45 LSKLEEAADSDGV--RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSG 119 (643)
Q Consensus 45 ~~~~~~~~~~~~~--~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~ 119 (643)
.++++|++.+|+. +++|+|+|++|+|||.+||+||||||||||+++|.|+++|++|+|.+||.++.. ..+|++++
T Consensus 1234 ~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~ 1313 (1495)
T PLN03232 1234 SIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLS 1313 (1495)
T ss_pred cEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcE
Confidence 3678999999953 579999999999999999999999999999999999999999999999998753 67899999
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhh-------hhhhcCCCcCCCCCHHHHHHHHHH
Q 006505 120 YVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHV-------AMARVGDDRVRGISGGERRRVSIG 192 (643)
Q Consensus 120 yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~-------~~~~vg~~~~~~LSGGerqRv~ia 192 (643)
|||||+.+|+. |++|||.+.. ..+ ++++.++++..++.+. .|+.+| +....||||||||++||
T Consensus 1314 iVpQdp~LF~g-TIr~NL~~~~----~~s----deei~~al~~a~l~~~I~~lp~GLdt~v~-e~G~~LSgGQrQrlaLA 1383 (1495)
T PLN03232 1314 IIPQSPVLFSG-TVRFNIDPFS----EHN----DADLWEALERAHIKDVIDRNPFGLDAEVS-EGGENFSVGQRQLLSLA 1383 (1495)
T ss_pred EECCCCeeeCc-cHHHHcCCCC----CCC----HHHHHHHHHHcCCHHHHHhCcCCCCceec-CCCCCCCHHHHHHHHHH
Confidence 99999999997 9999997531 112 3456677777776543 245554 35678999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 193 FDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 193 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
|||+++|+||+||||||+||+.+...+.+.|++.. .++|+|+++|+++. ...+|+|++|++|++++.|+++++.+
T Consensus 1384 RALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~--~~~TvI~IAHRl~t--i~~~DrIlVL~~G~ivE~Gt~~eLl~ 1458 (1495)
T PLN03232 1384 RALLRRSKILVLDEATASVDVRTDSLIQRTIREEF--KSCTMLVIAHRLNT--IIDCDKILVLSSGQVLEYDSPQELLS 1458 (1495)
T ss_pred HHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc--CCCEEEEEeCCHHH--HHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999999875 38999999999963 45699999999999999999999863
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-38 Score=390.00 Aligned_cols=213 Identities=28% Similarity=0.346 Sum_probs=185.0
Q ss_pred hhhcccccccccc--cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEE
Q 006505 45 LSKLEEAADSDGV--RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSG 119 (643)
Q Consensus 45 ~~~~~~~~~~~~~--~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~ 119 (643)
.++++|++.+|.+ +++|+|+|++|+|||.+||+|+||||||||+++|.|+++|++|+|.+||.++.. ..+|++++
T Consensus 1237 ~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~Is 1316 (1622)
T PLN03130 1237 SIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLG 1316 (1622)
T ss_pred cEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccE
Confidence 3678999999964 479999999999999999999999999999999999999999999999998854 67899999
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhh-------hhhhcCCCcCCCCCHHHHHHHHHH
Q 006505 120 YVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHV-------AMARVGDDRVRGISGGERRRVSIG 192 (643)
Q Consensus 120 yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~-------~~~~vg~~~~~~LSGGerqRv~ia 192 (643)
+||||+.+|.. |++|||.... ..+ ++++.++++..++.+. .|+.+| +....||||||||++||
T Consensus 1317 iVpQdp~LF~G-TIreNLd~~~----~~t----deei~~Al~~a~l~~~I~~lp~GLdt~Vg-e~G~nLSgGQrQrlaLA 1386 (1622)
T PLN03130 1317 IIPQAPVLFSG-TVRFNLDPFN----EHN----DADLWESLERAHLKDVIRRNSLGLDAEVS-EAGENFSVGQRQLLSLA 1386 (1622)
T ss_pred EECCCCccccc-cHHHHhCcCC----CCC----HHHHHHHHHHcCcHHHHHhCccccCcccc-CCCCCCCHHHHHHHHHH
Confidence 99999999998 9999997532 112 3456677777766543 355554 35668999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 193 FDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 193 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
|||+++|+||+||||||+||+.+...|.+.|++.. .++|+|+++|+++. ...+|+|++|++|++++.|+++++.+
T Consensus 1387 RALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~--~~~TvI~IAHRL~t--I~~~DrIlVLd~G~IvE~Gt~~eLl~ 1461 (1622)
T PLN03130 1387 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNT--IIDCDRILVLDAGRVVEFDTPENLLS 1461 (1622)
T ss_pred HHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEeCChHH--HHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999875 38999999999973 45699999999999999999999864
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-38 Score=322.73 Aligned_cols=225 Identities=30% Similarity=0.453 Sum_probs=201.8
Q ss_pred hhhhhccccccccc----ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCC-----ccEEEECCCcCC---
Q 006505 43 EELSKLEEAADSDG----VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQ-----SGSTFVNGSPID--- 110 (643)
Q Consensus 43 ~~~~~~~~~~~~~~----~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~-----~G~I~~~g~~~~--- 110 (643)
.++++++|++..++ ...++++|||++++||.+||+|.||||||-..+.+.|+++.. +|+|.|+|+++-
T Consensus 4 ~~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~s 83 (534)
T COG4172 4 MPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAAS 83 (534)
T ss_pred CcceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCC
Confidence 35678889988886 788999999999999999999999999999999999998752 899999999872
Q ss_pred chhh---c-ccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHH
Q 006505 111 KAQF---R-KVSGYVTQRD--TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGG 184 (643)
Q Consensus 111 ~~~~---~-~~i~yv~Q~~--~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGG 184 (643)
+.+. | .+|++++|++ .|.|-.|+.+.+.-..++..+.++++.++++.++|+.+|+.+..... +.+|.+||||
T Consensus 84 e~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl--~~yPHeLSGG 161 (534)
T COG4172 84 ERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRL--DAYPHELSGG 161 (534)
T ss_pred HHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhh--hhCCcccCcc
Confidence 2333 2 4699999997 57888899999988888877778888999999999999998755332 7799999999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEec
Q 006505 185 ERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHG 264 (643)
Q Consensus 185 erqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 264 (643)
|||||.||.||+++|++|+.||||++||...+.+|+++|+++.++.|..++++|||++. +.+++|||+||.+|++++.|
T Consensus 162 qRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~i-Vr~~ADrV~VM~~G~ivE~~ 240 (534)
T COG4172 162 QRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGI-VRKFADRVYVMQHGEIVETG 240 (534)
T ss_pred hhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHH-HHHhhhhEEEEeccEEeecC
Confidence 99999999999999999999999999999999999999999999999999999999985 88899999999999999999
Q ss_pred ChhHHH
Q 006505 265 TVDLLS 270 (643)
Q Consensus 265 ~~~~~~ 270 (643)
+.+++.
T Consensus 241 ~t~~lF 246 (534)
T COG4172 241 TTETLF 246 (534)
T ss_pred cHHHHh
Confidence 988875
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-38 Score=333.81 Aligned_cols=221 Identities=28% Similarity=0.459 Sum_probs=185.6
Q ss_pred hhhhccccccc--ccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccE
Q 006505 44 ELSKLEEAADS--DGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVS 118 (643)
Q Consensus 44 ~~~~~~~~~~~--~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i 118 (643)
..+.++++..- -.++++|+|+||++.+||.++|+||||||||||.|+|.|..+|.+|.|.+||-+++. +++-++|
T Consensus 333 g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hi 412 (580)
T COG4618 333 GALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHI 412 (580)
T ss_pred ceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhcccc
Confidence 34567776533 345789999999999999999999999999999999999999999999999998843 6678899
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHH-----HHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHH
Q 006505 119 GYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQ-----LRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGF 193 (643)
Q Consensus 119 ~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~-----~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~ 193 (643)
||.|||-.||+. ||.|||. ++....+.+. +...+.+++- .+.+-.||.+|+ ....||||||||+++||
T Consensus 413 GYLPQdVeLF~G-TIaeNIa---Rf~~~~d~~kIieAA~lAgvHelIl--~lP~GYdT~iG~-~G~~LSgGQRQRIaLAR 485 (580)
T COG4618 413 GYLPQDVELFDG-TIAENIA---RFGEEADPEKVIEAARLAGVHELIL--RLPQGYDTRIGE-GGATLSGGQRQRIALAR 485 (580)
T ss_pred CcCcccceecCC-cHHHHHH---hccccCCHHHHHHHHHHcChHHHHH--hCcCCccCccCC-CCCCCCchHHHHHHHHH
Confidence 999999999998 9999996 3221112111 1122444443 344556888875 45789999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHHHH
Q 006505 194 DVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSVSL 273 (643)
Q Consensus 194 aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f 273 (643)
||-.+|.+++||||-|+||......+.+.|.+++++ |.|+|+++|.|+ +...+|+|++|++|++-.+|+.+|+...+
T Consensus 486 AlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~r-G~~vvviaHRPs--~L~~~Dkilvl~~G~~~~FG~r~eVLa~~ 562 (580)
T COG4618 486 ALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKAR-GGTVVVIAHRPS--ALASVDKILVLQDGRIAAFGPREEVLAKV 562 (580)
T ss_pred HHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHc-CCEEEEEecCHH--HHhhcceeeeecCChHHhcCCHHHHHHHh
Confidence 999999999999999999999999999999999874 999999999996 68999999999999999999999998775
Q ss_pred H
Q 006505 274 R 274 (643)
Q Consensus 274 ~ 274 (643)
.
T Consensus 563 ~ 563 (580)
T COG4618 563 L 563 (580)
T ss_pred c
Confidence 4
|
|
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-38 Score=309.38 Aligned_cols=217 Identities=31% Similarity=0.471 Sum_probs=188.4
Q ss_pred hhhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc----hhhcccE
Q 006505 43 EELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK----AQFRKVS 118 (643)
Q Consensus 43 ~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~----~~~~~~i 118 (643)
.++++++|++.+|++|+||+|+|++|+|||-.+|+|||||||||||++++|..+|++|.+.+.|+...+ .+.|++|
T Consensus 29 ~~li~l~~v~v~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~I 108 (257)
T COG1119 29 EPLIELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRI 108 (257)
T ss_pred cceEEecceEEEECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHh
Confidence 357899999999999999999999999999999999999999999999999999999999999998743 4679999
Q ss_pred EEEccC--CCCCCCCCHHHHHHHHHH--h-cCC-CCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHH
Q 006505 119 GYVTQR--DTLFPLLTVEETLMFSAK--L-RLR-LPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIG 192 (643)
Q Consensus 119 ~yv~Q~--~~l~~~lTv~E~l~~~~~--~-~~~-~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia 192 (643)
|+|.-. ..+.+..+|+|-+.-+.. . ... ...++..+++..+++.+|+.+.+|+ +...||-||||||-||
T Consensus 109 G~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r-----~~~~LS~Ge~rrvLia 183 (257)
T COG1119 109 GLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADR-----PFGSLSQGEQRRVLIA 183 (257)
T ss_pred CccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccC-----chhhcCHhHHHHHHHH
Confidence 999844 344566788887753321 1 111 2345667889999999999998854 5679999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecC
Q 006505 193 FDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAET-RGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGT 265 (643)
Q Consensus 193 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 265 (643)
|||+.+|.+||||||++|||...+..+.+.|.+++.. .+.++|++||.++ |+...+++++++++|+++++|.
T Consensus 184 RALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~e-Ei~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 184 RALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAE-EIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred HHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchh-hcccccceEEEeeCCceeeccc
Confidence 9999999999999999999999999999999999863 3678999999998 6999999999999999999874
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-38 Score=363.93 Aligned_cols=213 Identities=31% Similarity=0.482 Sum_probs=185.3
Q ss_pred hhccccccccccc---ceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEE
Q 006505 46 SKLEEAADSDGVR---RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSG 119 (643)
Q Consensus 46 ~~~~~~~~~~~~~---~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~ 119 (643)
+..+|+...|..+ +||+|+|+++++|+-+||+|||||||||...+|-..++|++|.|.+||+++.. +.+|+++|
T Consensus 988 I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~ 1067 (1228)
T KOG0055|consen 988 IEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIG 1067 (1228)
T ss_pred EEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcc
Confidence 4577887777654 59999999999999999999999999999999999999999999999999854 56799999
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc-------CChhhhhhhcCCCcCCCCCHHHHHHHHHH
Q 006505 120 YVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKEL-------GLEHVAMARVGDDRVRGISGGERRRVSIG 192 (643)
Q Consensus 120 yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l-------gl~~~~~~~vg~~~~~~LSGGerqRv~ia 192 (643)
.|.|+|.||.. |++|||.|+. .+ .+.++ +.+.++.- +|.+-.||.+|+ +..+||||||||++||
T Consensus 1068 lVsQEP~LF~~-TIrENI~YG~-~~--vs~~e----Ii~Aak~ANaH~FI~sLP~GyDT~vGe-rG~QLSGGQKQRIAIA 1138 (1228)
T KOG0055|consen 1068 LVSQEPVLFNG-TIRENIAYGS-EE--VSEEE----IIEAAKLANAHNFISSLPQGYDTRVGE-RGVQLSGGQKQRIAIA 1138 (1228)
T ss_pred eeccCchhhcc-cHHHHHhccC-CC--CCHHH----HHHHHHHhhhHHHHhcCcCcccCccCc-ccCcCCchHHHHHHHH
Confidence 99999999997 9999999982 11 23333 23333322 456667898975 5568999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 193 FDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 193 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
||+++||+||||||.||+||+++.+.+.+.|.+.. .|+|.|++.|.++ ..+.+|.|.|+++|++++.|+.+++..
T Consensus 1139 RAilRnPkILLLDEATSALDseSErvVQeALd~a~--~gRT~IvIAHRLS--TIqnaD~I~Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1139 RAILRNPKILLLDEATSALDSESERVVQEALDRAM--EGRTTIVIAHRLS--TIQNADVIAVLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred HHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh--cCCcEEEEecchh--hhhcCCEEEEEECCEEEecccHHHHHh
Confidence 99999999999999999999999999999999986 3899999999997 468899999999999999999999875
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=354.01 Aligned_cols=204 Identities=19% Similarity=0.312 Sum_probs=172.7
Q ss_pred hhccccccccccc-----ceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhccc
Q 006505 46 SKLEEAADSDGVR-----RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKV 117 (643)
Q Consensus 46 ~~~~~~~~~~~~~-----~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~ 117 (643)
++++|++.+|+++ ++|+|+|+++++||.++|+||||||||||+++|+|+++|++|+|.+||.++.. ..+++.
T Consensus 338 i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~ 417 (555)
T TIGR01194 338 IELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDL 417 (555)
T ss_pred EEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhh
Confidence 6688999999752 59999999999999999999999999999999999999999999999998854 467889
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhc-CCCcCCCCCHHHHHHHHHHHHHh
Q 006505 118 SGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARV-GDDRVRGISGGERRRVSIGFDVI 196 (643)
Q Consensus 118 i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~v-g~~~~~~LSGGerqRv~ia~aL~ 196 (643)
++||+|++.+|.. |++||+. + +..+++++++++.+++.+..+... |-+....||||||||++||||++
T Consensus 418 i~~v~q~~~lf~~-ti~~n~~-------~---~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall 486 (555)
T TIGR01194 418 FSAIFADFHLFDD-LIGPDEG-------E---HASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWL 486 (555)
T ss_pred CcEEccChhhhhh-hhhcccc-------c---chhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHH
Confidence 9999999999886 8888841 1 123456788999999876543321 22234679999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHH-HHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEe
Q 006505 197 HDPKVLILDEPTSGLDSTSALQIIDMLK-VMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHH 263 (643)
Q Consensus 197 ~~p~illlDEPtsgLD~~~~~~i~~~L~-~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 263 (643)
.+|++++|||||++||+.+...+.+.+. .++. .|+|+|+++|+++ ..+.+|+|++|++|++++.
T Consensus 487 ~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~-~~~tiiiisH~~~--~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 487 EDRPILLFDEWAADQDPAFKRFFYEELLPDLKR-QGKTIIIISHDDQ--YFELADQIIKLAAGCIVKD 551 (555)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHh-CCCEEEEEeccHH--HHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999998664 4544 4899999999985 4689999999999999753
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-38 Score=384.52 Aligned_cols=210 Identities=24% Similarity=0.379 Sum_probs=175.6
Q ss_pred hhhcccccccccc---cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEEC-CCcCCc---hhhccc
Q 006505 45 LSKLEEAADSDGV---RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVN-GSPIDK---AQFRKV 117 (643)
Q Consensus 45 ~~~~~~~~~~~~~---~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~-g~~~~~---~~~~~~ 117 (643)
.++++|++++|+. +++|+|+|+++++||++||+||||||||||+++|+|+++|++|+|++| |.++.. ..+|+.
T Consensus 382 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~ 461 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSK 461 (1466)
T ss_pred cEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHh
Confidence 3678999999975 369999999999999999999999999999999999999999999994 676632 457889
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHHhcC---------CC-----------------------------------------
Q 006505 118 SGYVTQRDTLFPLLTVEETLMFSAKLRL---------RL----------------------------------------- 147 (643)
Q Consensus 118 i~yv~Q~~~l~~~lTv~E~l~~~~~~~~---------~~----------------------------------------- 147 (643)
+|||+|++.+|+. |++|||.++..... ..
T Consensus 462 Ig~V~Q~~~LF~~-TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 540 (1466)
T PTZ00265 462 IGVVSQDPLLFSN-SIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKN 540 (1466)
T ss_pred ccEecccccchhc-cHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccc
Confidence 9999999999985 99999998631000 00
Q ss_pred CHHHHHHHHHHHHHHcCChhhh-------hhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH
Q 006505 148 PQAQLRARVKSLVKELGLEHVA-------MARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQII 220 (643)
Q Consensus 148 ~~~~~~~~v~~~l~~lgl~~~~-------~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~ 220 (643)
..+..++++.++++.+++.+.. ||.+| +.+..||||||||++|||||+.+|+|||||||||+||+.++..+.
T Consensus 541 ~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg-~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~ 619 (1466)
T PTZ00265 541 YQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVG-SNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQ 619 (1466)
T ss_pred cccCCHHHHHHHHHHhCcHHHHHhCccccCceeC-CCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHH
Confidence 0011235677888888876543 45554 457899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCC
Q 006505 221 DMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANG 258 (643)
Q Consensus 221 ~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 258 (643)
+.|++++++.|+|+|+++|+++. + +.||+|++|++|
T Consensus 620 ~~L~~~~~~~g~TvIiIsHrls~-i-~~aD~Iivl~~g 655 (1466)
T PTZ00265 620 KTINNLKGNENRITIIIAHRLST-I-RYANTIFVLSNR 655 (1466)
T ss_pred HHHHHHhhcCCCEEEEEeCCHHH-H-HhCCEEEEEeCC
Confidence 99999976458999999999963 4 789999999986
|
|
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=317.86 Aligned_cols=200 Identities=29% Similarity=0.395 Sum_probs=167.9
Q ss_pred cccccccccc-ceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEE-----------ECCCcCCch--h-
Q 006505 49 EEAADSDGVR-RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTF-----------VNGSPIDKA--Q- 113 (643)
Q Consensus 49 ~~~~~~~~~~-~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~-----------~~g~~~~~~--~- 113 (643)
.+++++|+.+ .+|+|+| .+++||+++|+||||||||||||+|+|+++|++|+|. ++|+++... .
T Consensus 4 ~~~~~~y~~~~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~ 82 (255)
T cd03236 4 DEPVHRYGPNSFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKL 82 (255)
T ss_pred cCcceeecCcchhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHh
Confidence 3567888765 5999999 5999999999999999999999999999999999996 888876431 1
Q ss_pred hc--ccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHH
Q 006505 114 FR--KVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSI 191 (643)
Q Consensus 114 ~~--~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~i 191 (643)
.+ ..++|++|+..+++. ++.+++.+.. + ....++.+.++++.+|+++.. ++.+..||||||||++|
T Consensus 83 ~~~~~~i~~~~~~~~~~~~-~~~~~i~~~l--~----~~~~~~~~~~~l~~~gl~~~~-----~~~~~~LS~G~~qrv~l 150 (255)
T cd03236 83 LEGDVKVIVKPQYVDLIPK-AVKGKVGELL--K----KKDERGKLDELVDQLELRHVL-----DRNIDQLSGGELQRVAI 150 (255)
T ss_pred hhcccceeeecchhccCch-HHHHHHHHHh--c----hhHHHHHHHHHHHHcCCchhh-----cCChhhCCHHHHHHHHH
Confidence 11 247899999888885 8888887642 1 223456788999999998765 34677999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEec
Q 006505 192 GFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHG 264 (643)
Q Consensus 192 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 264 (643)
|++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.++||++++|+ |++.+.|
T Consensus 151 aral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~-~~tIIiiSHd~~-~~~~~ad~i~~l~-~~~~~~~ 220 (255)
T cd03236 151 AAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAED-DNYVLVVEHDLA-VLDYLSDYIHCLY-GEPGAYG 220 (255)
T ss_pred HHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEECCHH-HHHHhCCEEEEEC-CCCCcce
Confidence 99999999999999999999999999999999999874 899999999997 4777999999995 6565544
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-37 Score=350.88 Aligned_cols=205 Identities=26% Similarity=0.383 Sum_probs=173.9
Q ss_pred hhhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEc
Q 006505 43 EELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVT 122 (643)
Q Consensus 43 ~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~ 122 (643)
.+++++++++++|+++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.+++ + ..+||++
T Consensus 322 ~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~-------~~i~~v~ 393 (556)
T PRK11819 322 DKVIEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-T-------VKLAYVD 393 (556)
T ss_pred CeEEEEEeEEEEECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-c-------eEEEEEe
Confidence 3478899999999988999999999999999999999999999999999999999999999954 2 1499999
Q ss_pred cCC-CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChh-hhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCC
Q 006505 123 QRD-TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEH-VAMARVGDDRVRGISGGERRRVSIGFDVIHDPK 200 (643)
Q Consensus 123 Q~~-~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~-~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~ 200 (643)
|+. .+++.+||.||+.+...... ...+ ...++++++.+|+.+ .. ++++.+|||||||||+||++|+.+|+
T Consensus 394 q~~~~~~~~~tv~e~l~~~~~~~~-~~~~--~~~~~~~l~~~~l~~~~~-----~~~~~~LSgG~~qrv~la~al~~~p~ 465 (556)
T PRK11819 394 QSRDALDPNKTVWEEISGGLDIIK-VGNR--EIPSRAYVGRFNFKGGDQ-----QKKVGVLSGGERNRLHLAKTLKQGGN 465 (556)
T ss_pred CchhhcCCCCCHHHHHHhhccccc-cccc--HHHHHHHHHhCCCChhHh-----cCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 996 78889999999988643221 1111 223557899999963 34 44678999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeC-CeEE-EecChhH
Q 006505 201 VLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLAN-GSVL-HHGTVDL 268 (643)
Q Consensus 201 illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~-G~iv-~~G~~~~ 268 (643)
+|||||||+|||+.++..+.+.|+++. | |||++|||++ .+.++||++++|++ |++. +.|+.++
T Consensus 466 lllLDEPt~~LD~~~~~~l~~~l~~~~---~-tvi~vtHd~~-~~~~~~d~i~~l~~~g~~~~~~g~~~~ 530 (556)
T PRK11819 466 VLLLDEPTNDLDVETLRALEEALLEFP---G-CAVVISHDRW-FLDRIATHILAFEGDSQVEWFEGNFQE 530 (556)
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHhCC---C-eEEEEECCHH-HHHHhCCEEEEEECCCeEEEecCCHHH
Confidence 999999999999999999999999862 4 8999999997 58899999999986 7776 5666544
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=385.31 Aligned_cols=213 Identities=25% Similarity=0.301 Sum_probs=185.5
Q ss_pred hhhcccccccccc--cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEE
Q 006505 45 LSKLEEAADSDGV--RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSG 119 (643)
Q Consensus 45 ~~~~~~~~~~~~~--~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~ 119 (643)
-++++|++.+|.+ +.+|+||||+|+|||.+||+|+||||||||+++|.|+++|++|+|.+||.++.. ..+|+.++
T Consensus 1308 ~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~ 1387 (1560)
T PTZ00243 1308 SLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFS 1387 (1560)
T ss_pred eEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcce
Confidence 3678999999865 459999999999999999999999999999999999999999999999999854 67899999
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhh-------hhhhcCCCcCCCCCHHHHHHHHHH
Q 006505 120 YVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHV-------AMARVGDDRVRGISGGERRRVSIG 192 (643)
Q Consensus 120 yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~-------~~~~vg~~~~~~LSGGerqRv~ia 192 (643)
|||||+.+|+. |++|||.... ..+ ++++.++++..++.+. .|+.+|+ ....||||||||++||
T Consensus 1388 iVpQdp~LF~g-TIreNIdp~~----~~s----deeI~~Al~~a~l~~~I~~lp~Gldt~vge-~G~nLSgGQrQrLaLA 1457 (1560)
T PTZ00243 1388 MIPQDPVLFDG-TVRQNVDPFL----EAS----SAEVWAALELVGLRERVASESEGIDSRVLE-GGSNYSVGQRQLMCMA 1457 (1560)
T ss_pred EECCCCccccc-cHHHHhCccc----CCC----HHHHHHHHHHCCChHHHhhCcccccccccC-CcCcCCHHHHHHHHHH
Confidence 99999999997 9999996321 112 3467788888887654 3556653 5578999999999999
Q ss_pred HHHhcC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 193 FDVIHD-PKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 193 ~aL~~~-p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
|||+++ |+||+||||||+||+.+...+.+.|++.. .++|||+++|+++ ....||+|++|++|++++.|+++++.+
T Consensus 1458 RALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~--~~~TvI~IAHRl~--ti~~~DrIlVLd~G~VvE~Gt~~eLl~ 1533 (1560)
T PTZ00243 1458 RALLKKGSGFILMDEATANIDPALDRQIQATVMSAF--SAYTVITIAHRLH--TVAQYDKIIVMDHGAVAEMGSPRELVM 1533 (1560)
T ss_pred HHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC--CCCEEEEEeccHH--HHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999996 89999999999999999999999999864 3799999999985 467899999999999999999999863
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-37 Score=350.41 Aligned_cols=200 Identities=27% Similarity=0.340 Sum_probs=175.2
Q ss_pred hhhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEc
Q 006505 43 EELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVT 122 (643)
Q Consensus 43 ~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~ 122 (643)
.+++++++++++|++. .|+++|+++++||+++|+||||||||||+|+|+|+.+|++|+|.++ ..++|++
T Consensus 338 ~~~l~~~~ls~~~~~~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~----------~~i~y~~ 406 (590)
T PRK13409 338 ETLVEYPDLTKKLGDF-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE----------LKISYKP 406 (590)
T ss_pred ceEEEEcceEEEECCE-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe----------eeEEEec
Confidence 3567899999999765 5999999999999999999999999999999999999999999986 1489999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEE
Q 006505 123 QRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVL 202 (643)
Q Consensus 123 Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~il 202 (643)
|+..+++.+||+|++.+..... .. ...++++++.+++.+.. ++++.+|||||||||+||++|+.+|++|
T Consensus 407 Q~~~~~~~~tv~e~l~~~~~~~---~~---~~~~~~~L~~l~l~~~~-----~~~~~~LSGGe~QRvaiAraL~~~p~ll 475 (590)
T PRK13409 407 QYIKPDYDGTVEDLLRSITDDL---GS---SYYKSEIIKPLQLERLL-----DKNVKDLSGGELQRVAIAACLSRDADLY 475 (590)
T ss_pred ccccCCCCCcHHHHHHHHhhhc---Ch---HHHHHHHHHHCCCHHHH-----hCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 9988888899999998753211 11 23568899999998766 4577899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecCh
Q 006505 203 ILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTV 266 (643)
Q Consensus 203 llDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 266 (643)
||||||+|||+.++..+.+.|++++++.|+|||++|||++ .+..++|++++|+ |++...|..
T Consensus 476 LLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~-~~~~~aDrvivl~-~~~~~~g~~ 537 (590)
T PRK13409 476 LLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIY-MIDYISDRLMVFE-GEPGKHGHA 537 (590)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEc-Ccceeeeec
Confidence 9999999999999999999999998866899999999997 4888999999996 577777663
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=384.74 Aligned_cols=213 Identities=21% Similarity=0.229 Sum_probs=184.7
Q ss_pred hhhcccccccccc--cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEE
Q 006505 45 LSKLEEAADSDGV--RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSG 119 (643)
Q Consensus 45 ~~~~~~~~~~~~~--~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~ 119 (643)
.++++|++.+|.. +++|+|||++|+|||.+||+|+||||||||+++|.|+++|++|+|.+||.++.. ..+|++++
T Consensus 1284 ~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~ 1363 (1522)
T TIGR00957 1284 RVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKIT 1363 (1522)
T ss_pred cEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCe
Confidence 3678999999965 469999999999999999999999999999999999999999999999999854 57899999
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhh-------hhhhcCCCcCCCCCHHHHHHHHHH
Q 006505 120 YVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHV-------AMARVGDDRVRGISGGERRRVSIG 192 (643)
Q Consensus 120 yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~-------~~~~vg~~~~~~LSGGerqRv~ia 192 (643)
|||||+.+|++ |++|||.... ..+ ++.+.++++..++.+. .|+.+| +....||||||||++||
T Consensus 1364 iVpQdp~LF~g-TIr~NLdp~~----~~s----deei~~al~~a~l~~~I~~lp~GLdt~v~-e~G~~LSgGQrQrl~LA 1433 (1522)
T TIGR00957 1364 IIPQDPVLFSG-SLRMNLDPFS----QYS----DEEVWWALELAHLKTFVSALPDKLDHECA-EGGENLSVGQRQLVCLA 1433 (1522)
T ss_pred EECCCCcccCc-cHHHHcCccc----CCC----HHHHHHHHHHcCcHHHHhhCccCCCceec-CCCCcCCHHHHHHHHHH
Confidence 99999999998 9999996211 112 2346677777776543 355554 35568999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 193 FDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 193 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
|||+++|+||+||||||+||+.+...+.+.|++.. .++|||+++|+++ ....+|+|++|++|++++.|+++++.+
T Consensus 1434 RALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~--~~~TvI~IAHRl~--ti~~~DrIlVld~G~IvE~G~~~eLl~ 1508 (1522)
T TIGR00957 1434 RALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF--EDCTVLTIAHRLN--TIMDYTRVIVLDKGEVAEFGAPSNLLQ 1508 (1522)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHH--HHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999999875 3899999999986 356799999999999999999999864
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-37 Score=348.74 Aligned_cols=205 Identities=26% Similarity=0.396 Sum_probs=173.3
Q ss_pred hhhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEc
Q 006505 43 EELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVT 122 (643)
Q Consensus 43 ~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~ 122 (643)
.+++++++++++|+++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.+++ + ..+||++
T Consensus 320 ~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~-------~~i~~v~ 391 (552)
T TIGR03719 320 DKVIEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-T-------VKLAYVD 391 (552)
T ss_pred CeEEEEeeEEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-c-------eEEEEEe
Confidence 3568899999999988999999999999999999999999999999999999999999999954 2 1599999
Q ss_pred cCC-CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChh-hhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCC
Q 006505 123 QRD-TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEH-VAMARVGDDRVRGISGGERRRVSIGFDVIHDPK 200 (643)
Q Consensus 123 Q~~-~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~-~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~ 200 (643)
|++ .+++.+||.|++.++.... ..... +.+++++++.+|+.+ .. ++++.+|||||||||+||++|+.+|+
T Consensus 392 q~~~~~~~~~tv~e~l~~~~~~~-~~~~~--~~~~~~~l~~~~l~~~~~-----~~~~~~LSgGe~qrv~la~al~~~p~ 463 (552)
T TIGR03719 392 QSRDALDPNKTVWEEISGGLDII-QLGKR--EVPSRAYVGRFNFKGSDQ-----QKKVGQLSGGERNRVHLAKTLKSGGN 463 (552)
T ss_pred CCccccCCCCcHHHHHHhhcccc-ccCcc--hHHHHHHHHhCCCChhHh-----cCchhhCCHHHHHHHHHHHHHhhCCC
Confidence 996 4788899999998864322 11111 224567899999963 34 44678999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeC-CeEE-EecChhH
Q 006505 201 VLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLAN-GSVL-HHGTVDL 268 (643)
Q Consensus 201 illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~-G~iv-~~G~~~~ 268 (643)
+|||||||+|||+.++..+.+.|+++. | |||++|||++ .+.++||++++|++ |+++ +.|+.++
T Consensus 464 lllLDEPt~~LD~~~~~~l~~~l~~~~---~-~viivsHd~~-~~~~~~d~i~~l~~~~~~~~~~g~~~~ 528 (552)
T TIGR03719 464 VLLLDEPTNDLDVETLRALEEALLEFA---G-CAVVISHDRW-FLDRIATHILAFEGDSHVEWFEGNYSE 528 (552)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHCC---C-eEEEEeCCHH-HHHHhCCEEEEEECCCeEEEeCCCHHH
Confidence 999999999999999999999999872 4 8999999997 48889999999986 5776 5566543
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-38 Score=330.86 Aligned_cols=248 Identities=25% Similarity=0.382 Sum_probs=200.4
Q ss_pred cceeccc---ccccccccccccccCCCcchhh------hhhhccccccccc-ccceeeceEEEEecCeEEEEECCCCCCH
Q 006505 15 NYNVYTQ---KKETPFKIFTKNQLNDDHHAQE------ELSKLEEAADSDG-VRRVLDGVSCKAKPWEILAIVGPSGAGK 84 (643)
Q Consensus 15 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~aIlG~nGaGK 84 (643)
.|+..++ +-++.++++.++.+..+.+... .-++.+|++..|. +|++|+||||++.||+.+|++||||+||
T Consensus 498 ~YR~iQ~nfiDmEnmfdllkee~eVvd~P~a~pl~~~~G~i~fsnvtF~Y~p~k~vl~disF~v~pGktvAlVG~SGaGK 577 (790)
T KOG0056|consen 498 YYRSIQKNFIDMENMFDLLKEEPEVVDLPGAPPLKVTQGKIEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGK 577 (790)
T ss_pred HHHHHHHhhhhHHHHHHHhhcCchhhcCCCCCCccccCCeEEEEEeEEecCCCCceeecceEEecCCcEEEEECCCCCch
Confidence 4565554 5566666666665544433322 2345678887775 5789999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHH--HHHH
Q 006505 85 SSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRAR--VKSL 159 (643)
Q Consensus 85 STLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~--v~~~ 159 (643)
||++|+|-...+.++|+|.+||+++.. ...|+.||.||||..+|.+ |+..||+|+. ...+.++..+. +..+
T Consensus 578 STimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNd-TI~yNIryak---~~AsneevyaAAkAA~I 653 (790)
T KOG0056|consen 578 STIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFND-TILYNIRYAK---PSASNEEVYAAAKAAQI 653 (790)
T ss_pred hHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecc-eeeeheeecC---CCCChHHHHHHHHHhhH
Confidence 999999999999999999999999854 5789999999999999987 9999998862 22233332221 2222
Q ss_pred HH-HcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEe
Q 006505 160 VK-ELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSI 238 (643)
Q Consensus 160 l~-~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~ 238 (643)
-+ .++..+-.+++||.+ .-.|||||||||+|||+++.+|.+++|||.||+||..+.+.|...|.+++. |+|-|++.
T Consensus 654 HdrIl~fPegY~t~VGER-GLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca--~RTtIVvA 730 (790)
T KOG0056|consen 654 HDRILQFPEGYNTRVGER-GLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA--NRTTIVVA 730 (790)
T ss_pred HHHHhcCchhhhhhhhhc-ccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc--CCceEEEe
Confidence 22 246666678889754 457999999999999999999999999999999999999999999999995 89999999
Q ss_pred cCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 239 HQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 239 H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
|.++. .-.+|.|+++++|+|++.|..+|+..
T Consensus 731 HRLST--ivnAD~ILvi~~G~IvErG~HeeLl~ 761 (790)
T KOG0056|consen 731 HRLST--IVNADLILVISNGRIVERGRHEELLK 761 (790)
T ss_pred eeehh--eecccEEEEEeCCeEeecCcHHHHHh
Confidence 99974 45699999999999999999999864
|
|
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-37 Score=293.20 Aligned_cols=202 Identities=29% Similarity=0.480 Sum_probs=172.4
Q ss_pred cccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchh---hcccEEEEccCC--CCCCC
Q 006505 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQ---FRKVSGYVTQRD--TLFPL 130 (643)
Q Consensus 56 ~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~---~~~~i~yv~Q~~--~l~~~ 130 (643)
..+++|+++|++|.+|+++.|+|.||||||||+|+|+|.+.|++|+|.++|.++++.. ....++-|+||+ ..++.
T Consensus 17 ~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~ 96 (263)
T COG1101 17 LEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPE 96 (263)
T ss_pred hHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCccc
Confidence 3478999999999999999999999999999999999999999999999999997632 234578899997 46999
Q ss_pred CCHHHHHHHHHHhcCC---CC---HHHHHHHHHHHHHHc--CChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEE
Q 006505 131 LTVEETLMFSAKLRLR---LP---QAQLRARVKSLVKEL--GLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVL 202 (643)
Q Consensus 131 lTv~E~l~~~~~~~~~---~~---~~~~~~~v~~~l~~l--gl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~il 202 (643)
||++||+..+.. |.. .+ ....++...+-++.+ ||++..+++ +.-|||||||-++++.|-++.|+||
T Consensus 97 lTieENl~la~~-Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~-----iglLSGGQRQalsL~MAtl~~pkiL 170 (263)
T COG1101 97 LTIEENLALAES-RGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDR-----IGLLSGGQRQALSLLMATLHPPKIL 170 (263)
T ss_pred ccHHHHHHHHHh-cCcccccchhhhHHHHHHHHHHHhhcccchhhhhcCh-----hhhccchHHHHHHHHHHhcCCCcEE
Confidence 999999998754 311 11 223344455556665 567777554 4589999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEec
Q 006505 203 ILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHG 264 (643)
Q Consensus 203 llDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 264 (643)
+|||-|++|||.++..+++.-.++.++.+.|.+|+||.++ ++.++.+|.++|++|+|+.+-
T Consensus 171 LLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~-~Al~yG~RlImLh~G~IvlDv 231 (263)
T COG1101 171 LLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNME-DALDYGNRLIMLHSGKIVLDV 231 (263)
T ss_pred EecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHH-HHHhhCCeEEEEeCCeEEEEc
Confidence 9999999999999999999999999888999999999998 588999999999999999864
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=347.23 Aligned_cols=204 Identities=25% Similarity=0.424 Sum_probs=175.1
Q ss_pred hhhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEc
Q 006505 43 EELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVT 122 (643)
Q Consensus 43 ~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~ 122 (643)
.+++.++++++.|+++.+|+|+|++|++||+++|+||||||||||||+|+|+.+|++|+|.+++. ..+||++
T Consensus 310 ~~~l~~~~l~~~y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------~~igy~~ 381 (638)
T PRK10636 310 NPLLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG--------IKLGYFA 381 (638)
T ss_pred CceEEEEeeEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC--------EEEEEec
Confidence 45788999999999899999999999999999999999999999999999999999999999742 2589999
Q ss_pred cCC--CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChh-hhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCC
Q 006505 123 QRD--TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEH-VAMARVGDDRVRGISGGERRRVSIGFDVIHDP 199 (643)
Q Consensus 123 Q~~--~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~-~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p 199 (643)
|+. .+.+..|+.+++.- .. .....+++.++|+.+++.. .. ++++..|||||||||+||++|+.+|
T Consensus 382 Q~~~~~l~~~~~~~~~~~~---~~----~~~~~~~~~~~L~~~~l~~~~~-----~~~~~~LSgGekqRl~La~~l~~~p 449 (638)
T PRK10636 382 QHQLEFLRADESPLQHLAR---LA----PQELEQKLRDYLGGFGFQGDKV-----TEETRRFSGGEKARLVLALIVWQRP 449 (638)
T ss_pred CcchhhCCccchHHHHHHH---hC----chhhHHHHHHHHHHcCCChhHh-----cCchhhCCHHHHHHHHHHHHHhcCC
Confidence 974 35566788887631 11 1223457889999999953 44 3467899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEE-EecChhHHHH
Q 006505 200 KVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVL-HHGTVDLLSV 271 (643)
Q Consensus 200 ~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv-~~G~~~~~~~ 271 (643)
++|||||||+|||+.++..+.+.|+++ .| |||++|||+. .+.++||++++|++|+++ +.|+.++..+
T Consensus 450 ~lLlLDEPt~~LD~~~~~~l~~~L~~~---~g-tvi~vSHd~~-~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 517 (638)
T PRK10636 450 NLLLLDEPTNHLDLDMRQALTEALIDF---EG-ALVVVSHDRH-LLRSTTDDLYLVHDGKVEPFDGDLEDYQQ 517 (638)
T ss_pred CEEEEcCCCCCCCHHHHHHHHHHHHHc---CC-eEEEEeCCHH-HHHHhCCEEEEEECCEEEEcCCCHHHHHH
Confidence 999999999999999999999999886 24 9999999997 488899999999999997 8899887643
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=375.61 Aligned_cols=212 Identities=24% Similarity=0.311 Sum_probs=184.2
Q ss_pred hhhcccccccccc--cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEE
Q 006505 45 LSKLEEAADSDGV--RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSG 119 (643)
Q Consensus 45 ~~~~~~~~~~~~~--~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~ 119 (643)
.++++|++.+|.. +++|+|+|++|+|||.+||+|+||||||||+++|.|+++ .+|+|.+||.++.. ..+|++++
T Consensus 1217 ~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is 1295 (1490)
T TIGR01271 1217 QMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFG 1295 (1490)
T ss_pred eEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceE
Confidence 3678999999964 689999999999999999999999999999999999987 79999999999854 56899999
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhh-------hhhhcCCCcCCCCCHHHHHHHHHH
Q 006505 120 YVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHV-------AMARVGDDRVRGISGGERRRVSIG 192 (643)
Q Consensus 120 yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~-------~~~~vg~~~~~~LSGGerqRv~ia 192 (643)
||||++.+|+. |++|||.... ..+ ++++.++++..++.+. .|+.+++ ....||||||||++||
T Consensus 1296 ~IpQdp~LF~G-TIR~NLdp~~----~~t----deei~~aL~~~~L~~~i~~lp~GLdt~v~e-~G~nLSgGQrQrL~LA 1365 (1490)
T TIGR01271 1296 VIPQKVFIFSG-TFRKNLDPYE----QWS----DEEIWKVAEEVGLKSVIEQFPDKLDFVLVD-GGYVLSNGHKQLMCLA 1365 (1490)
T ss_pred EEeCCCccCcc-CHHHHhCccc----CCC----HHHHHHHHHHCCCHHHHHhCcccccccccc-CCCcCCHHHHHHHHHH
Confidence 99999999998 9999996321 112 3567788888887643 3555543 4567999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 193 FDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 193 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
|||+++|+||+||||||+||+.+...+.+.|++.. .++|||+++|.++ ....+|+|++|++|++++.|+++++.+
T Consensus 1366 RALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~--~~~TvI~IaHRl~--ti~~~DrIlvL~~G~ivE~g~p~~Ll~ 1440 (1490)
T TIGR01271 1366 RSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF--SNCTVILSEHRVE--ALLECQQFLVIEGSSVKQYDSIQKLLN 1440 (1490)
T ss_pred HHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHH--HHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 99999999999999999999999999999999875 3799999999986 456699999999999999999998863
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=292.50 Aligned_cols=155 Identities=25% Similarity=0.369 Sum_probs=138.9
Q ss_pred ccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEccCCCCC
Q 006505 49 EEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLF 128 (643)
Q Consensus 49 ~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~ 128 (643)
.|++++|+++.+++++ +++++||+++|+||||||||||+|+|+|+.+|++|+|.++|++ ++|++|+..
T Consensus 4 ~~l~~~~~~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~---------i~~~~q~~~-- 71 (177)
T cd03222 4 PDCVKRYGVFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT---------PVYKPQYID-- 71 (177)
T ss_pred CCeEEEECCEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE---------EEEEcccCC--
Confidence 4678899999999985 8999999999999999999999999999999999999999853 788888532
Q ss_pred CCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q 006505 129 PLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPT 208 (643)
Q Consensus 129 ~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPt 208 (643)
||||||||++||++|+.+|++++|||||
T Consensus 72 ----------------------------------------------------LSgGq~qrv~laral~~~p~lllLDEPt 99 (177)
T cd03222 72 ----------------------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPS 99 (177)
T ss_pred ----------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 9999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEe--cChhH
Q 006505 209 SGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHH--GTVDL 268 (643)
Q Consensus 209 sgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~--G~~~~ 268 (643)
+|||+.++..+.+.+++++++.+.|||++||+++ .+.+++|++++|+++..++. |+|..
T Consensus 100 s~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~~~~~~~~~~~~~~ 160 (177)
T cd03222 100 AYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLA-VLDYLSDRIHVFEGEPGVYGIASQPKG 160 (177)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHH-HHHHhCCEEEEEcCCCccceeccCCcc
Confidence 9999999999999999998753499999999997 47789999999998766655 66543
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=359.02 Aligned_cols=223 Identities=30% Similarity=0.520 Sum_probs=205.2
Q ss_pred hhhhcccccccccccc-eeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc----hhhcccE
Q 006505 44 ELSKLEEAADSDGVRR-VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK----AQFRKVS 118 (643)
Q Consensus 44 ~~~~~~~~~~~~~~~~-iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~----~~~~~~i 118 (643)
..+.++++.+.|+.+. +++++|+.|++||+.+++|+|||||||++|+|.|..+|++|++.++|.++.. .+.++.+
T Consensus 563 ~~~~~~~L~k~y~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~i 642 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQL 642 (885)
T ss_pred ceEEEcceeeeecchhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhc
Confidence 4556788889998887 9999999999999999999999999999999999999999999999998853 2478899
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcC
Q 006505 119 GYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHD 198 (643)
Q Consensus 119 ~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~ 198 (643)
||+||+|.+++.+|.+|++.+.++++ +.+.++.++.++.+++.+||.+.+++ .++.+|||+|||+++|.|++.+
T Consensus 643 GyCPQ~d~l~~~lT~rEhL~~~arlr-G~~~~di~~~v~~ll~~~~L~~~~~~-----~~~~ySgG~kRkLs~aialig~ 716 (885)
T KOG0059|consen 643 GYCPQFDALWEELTGREHLEFYARLR-GLPRSDIGSAIEKLLRLVGLGPYANK-----QVRTYSGGNKRRLSFAIALIGD 716 (885)
T ss_pred ccCCchhhhhhhccHHHHHHHHHHHc-CCChhHHHHHHHHHHHHcCChhhhcc-----chhhCCCcchhhHHHHHHHhcC
Confidence 99999999999999999999999987 44566777889999999999998866 5679999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHHHHH
Q 006505 199 PKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSVSLR 274 (643)
Q Consensus 199 p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~ 274 (643)
|++++|||||+|+||.+++.++++++++.+. |+.||+|||.++ |+..+|||+.+|.+|++...|+++++...|.
T Consensus 717 p~vi~LDEPstGmDP~arr~lW~ii~~~~k~-g~aiiLTSHsMe-E~EaLCtR~aImv~G~l~ciGs~q~LKsrfG 790 (885)
T KOG0059|consen 717 PSVILLDEPSTGLDPKARRHLWDIIARLRKN-GKAIILTSHSME-EAEALCTRTAIMVIGQLRCIGSPQELKSRYG 790 (885)
T ss_pred CCEEEecCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEcCCHH-HHHHHhhhhheeecCeeEEecChHHHHhhcC
Confidence 9999999999999999999999999999874 779999999998 7999999999999999999999999987664
|
|
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-36 Score=282.55 Aligned_cols=143 Identities=34% Similarity=0.532 Sum_probs=133.4
Q ss_pred hcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEccCCC
Q 006505 47 KLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDT 126 (643)
Q Consensus 47 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~ 126 (643)
+++++.++|+++.+++++|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+ +.++|++|
T Consensus 2 ~~~~l~~~~~~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~--------~~i~~~~~--- 70 (144)
T cd03221 2 ELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST--------VKIGYFEQ--- 70 (144)
T ss_pred EEEEEEEEECCceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe--------EEEEEEcc---
Confidence 4678888888778999999999999999999999999999999999999999999999984 46899998
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q 006505 127 LFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDE 206 (643)
Q Consensus 127 l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDE 206 (643)
||+|||||++|||+|+.+|+++++||
T Consensus 71 ------------------------------------------------------lS~G~~~rv~laral~~~p~illlDE 96 (144)
T cd03221 71 ------------------------------------------------------LSGGEKMRLALAKLLLENPNLLLLDE 96 (144)
T ss_pred ------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 99999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCe
Q 006505 207 PTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGS 259 (643)
Q Consensus 207 PtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 259 (643)
||+|||+.++..+.+.|+++ ++|+|++||+++ ++.+++|++++|++|+
T Consensus 97 P~~~LD~~~~~~l~~~l~~~----~~til~~th~~~-~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 97 PTNHLDLESIEALEEALKEY----PGTVILVSHDRY-FLDQVATKIIELEDGK 144 (144)
T ss_pred CccCCCHHHHHHHHHHHHHc----CCEEEEEECCHH-HHHHhCCEEEEEeCCC
Confidence 99999999999999999875 479999999997 5788999999999986
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-36 Score=344.58 Aligned_cols=206 Identities=23% Similarity=0.356 Sum_probs=174.2
Q ss_pred hhhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEc
Q 006505 43 EELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVT 122 (643)
Q Consensus 43 ~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~ 122 (643)
.++++++|++++|+++++|+|+|++|++|++++|+||||||||||||+|+|+.+|++|+|.+ |.++ .+||++
T Consensus 317 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~-------~i~y~~ 388 (635)
T PRK11147 317 KIVFEMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL-------EVAYFD 388 (635)
T ss_pred CceEEEeeeEEEECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc-------EEEEEe
Confidence 45788999999999889999999999999999999999999999999999999999999999 5432 489999
Q ss_pred cCC-CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCh-hhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCC
Q 006505 123 QRD-TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLE-HVAMARVGDDRVRGISGGERRRVSIGFDVIHDPK 200 (643)
Q Consensus 123 Q~~-~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~-~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~ 200 (643)
|+. .+++.+||.|++.+.... .... ...+++.++++.+++. +.. +.+++.|||||||||+||++|+.+|+
T Consensus 389 q~~~~l~~~~tv~e~l~~~~~~-~~~~--~~~~~~~~~l~~~~l~~~~~-----~~~~~~LSgGekqRl~la~al~~~p~ 460 (635)
T PRK11147 389 QHRAELDPEKTVMDNLAEGKQE-VMVN--GRPRHVLGYLQDFLFHPKRA-----MTPVKALSGGERNRLLLARLFLKPSN 460 (635)
T ss_pred CcccccCCCCCHHHHHHhhccc-cccc--chHHHHHHHHHhcCCCHHHH-----hChhhhCCHHHHHHHHHHHHHhcCCC
Confidence 985 588999999999875321 1111 1234678899999985 344 34667999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEe-CCeEEE-ecChhHH
Q 006505 201 VLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLA-NGSVLH-HGTVDLL 269 (643)
Q Consensus 201 illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~-~G~iv~-~G~~~~~ 269 (643)
+|||||||+|||+.++..+.+.|+++ +.|||++|||.. .+.++||++++|+ +|++.. .|+.++-
T Consensus 461 lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vSHd~~-~~~~~~d~i~~l~~~g~i~~~~g~y~~y 526 (635)
T PRK11147 461 LLILDEPTNDLDVETLELLEELLDSY----QGTVLLVSHDRQ-FVDNTVTECWIFEGNGKIGRYVGGYHDA 526 (635)
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHhC----CCeEEEEECCHH-HHHHhcCEEEEEeCCCeEEEccCCHHHH
Confidence 99999999999999999999999775 459999999987 4788999999998 798764 5665543
|
|
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=276.59 Aligned_cols=221 Identities=25% Similarity=0.396 Sum_probs=195.5
Q ss_pred hhhcccccccccc---------cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCch---
Q 006505 45 LSKLEEAADSDGV---------RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKA--- 112 (643)
Q Consensus 45 ~~~~~~~~~~~~~---------~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~--- 112 (643)
+++++|++|.+.. ..+++.|||++++|+-+||+|.||||||||.|+|+|..+|++|+|.+||+++.-.
T Consensus 4 LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~ 83 (267)
T COG4167 4 LLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYS 83 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchH
Confidence 4567777777643 3588999999999999999999999999999999999999999999999998432
Q ss_pred hhcccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHH
Q 006505 113 QFRKVSGYVTQRD--TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVS 190 (643)
Q Consensus 113 ~~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ 190 (643)
...++|-+++||+ .+.|.+.+.+-+..+.++......+++.+++.+.|+.+||-+.. + +-++..||-||||||+
T Consensus 84 ~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdh-a---n~~~~~la~~QKQRVa 159 (267)
T COG4167 84 FRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDH-A---NYYPHMLAPGQKQRVA 159 (267)
T ss_pred hhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccc-c---ccchhhcCchhHHHHH
Confidence 2346799999996 47888999999998888776667777888999999999985422 1 4478899999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 191 IGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 191 ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
+||||+-+|+|++.||...+||...+.++.++.-++.++.|.+-|.++.+... +..++|+|+||++|++++.|++.++.
T Consensus 160 LARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~-iKHi~D~viVM~EG~vvE~G~t~~v~ 238 (267)
T COG4167 160 LARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGM-IKHISDQVLVMHEGEVVERGSTADVL 238 (267)
T ss_pred HHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhH-hhhhcccEEEEecCceeecCChhhhh
Confidence 99999999999999999999999999999999999999999999999999984 88899999999999999999998875
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=341.16 Aligned_cols=205 Identities=25% Similarity=0.387 Sum_probs=166.3
Q ss_pred hhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEccCC
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRD 125 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~ 125 (643)
+.++|++++|+++.+|+||||+|++||+++|+||||||||||||+|+|..+|++|+|.++|.. .++|++|++
T Consensus 2 i~i~nls~~~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~--------~i~~~~q~~ 73 (638)
T PRK10636 2 IVFSSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW--------QLAWVNQET 73 (638)
T ss_pred EEEEEEEEEeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC--------EEEEEecCC
Confidence 568899999999999999999999999999999999999999999999999999999998742 378888864
Q ss_pred CCCCCCCHHHHHHHHH-----------------------HhcC---CCCHHHHHHHHHHHHHHcCCh-hhhhhhcCCCcC
Q 006505 126 TLFPLLTVEETLMFSA-----------------------KLRL---RLPQAQLRARVKSLVKELGLE-HVAMARVGDDRV 178 (643)
Q Consensus 126 ~l~~~lTv~E~l~~~~-----------------------~~~~---~~~~~~~~~~v~~~l~~lgl~-~~~~~~vg~~~~ 178 (643)
..+. .|+.+.+.-.. .+.. .....+.+++++++++.+|+. +.. ++++
T Consensus 74 ~~~~-~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~-----~~~~ 147 (638)
T PRK10636 74 PALP-QPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQL-----ERPV 147 (638)
T ss_pred CCCC-CCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhh-----cCch
Confidence 3332 45555432110 0000 000112345788999999996 444 4467
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCC
Q 006505 179 RGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANG 258 (643)
Q Consensus 179 ~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 258 (643)
..|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ +.|||++|||.. .+.++||++++|++|
T Consensus 148 ~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~----~~tviivsHd~~-~l~~~~d~i~~L~~G 222 (638)
T PRK10636 148 SDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY----QGTLILISHDRD-FLDPIVDKIIHIEQQ 222 (638)
T ss_pred hhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC----CCeEEEEeCCHH-HHHHhcCEEEEEeCC
Confidence 799999999999999999999999999999999999999999998764 569999999997 488899999999999
Q ss_pred eEE-EecChhHH
Q 006505 259 SVL-HHGTVDLL 269 (643)
Q Consensus 259 ~iv-~~G~~~~~ 269 (643)
++. |.|+.+..
T Consensus 223 ~i~~~~g~~~~~ 234 (638)
T PRK10636 223 SLFEYTGNYSSF 234 (638)
T ss_pred EEEEecCCHHHH
Confidence 986 67776543
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=340.18 Aligned_cols=206 Identities=21% Similarity=0.354 Sum_probs=170.1
Q ss_pred hhhhccccccccc-ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEc
Q 006505 44 ELSKLEEAADSDG-VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVT 122 (643)
Q Consensus 44 ~~~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~ 122 (643)
++++++++++.|+ .+.+|+|+||++++||+++|+||||||||||||+|+|+.+|++|+|.+++. ..+||++
T Consensus 507 ~~L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~--------~~igyv~ 578 (718)
T PLN03073 507 PIISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAK--------VRMAVFS 578 (718)
T ss_pred ceEEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCc--------eeEEEEe
Confidence 5688999999995 456999999999999999999999999999999999999999999998752 3599999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChh-hhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCE
Q 006505 123 QRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEH-VAMARVGDDRVRGISGGERRRVSIGFDVIHDPKV 201 (643)
Q Consensus 123 Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~-~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~i 201 (643)
|+. .+.+++.++..+......+.. .++++.++++.+|+.+ .. ++++..|||||||||+||++|+.+|++
T Consensus 579 Q~~--~~~l~~~~~~~~~~~~~~~~~---~~~~i~~~L~~~gl~~~~~-----~~~~~~LSgGqkqRvaLAraL~~~p~l 648 (718)
T PLN03073 579 QHH--VDGLDLSSNPLLYMMRCFPGV---PEQKLRAHLGSFGVTGNLA-----LQPMYTLSGGQKSRVAFAKITFKKPHI 648 (718)
T ss_pred ccc--cccCCcchhHHHHHHHhcCCC---CHHHHHHHHHHCCCChHHh-----cCCccccCHHHHHHHHHHHHHhcCCCE
Confidence 985 345566666443221111111 1356788999999963 34 446789999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEE-EecChhHHHHH
Q 006505 202 LILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVL-HHGTVDLLSVS 272 (643)
Q Consensus 202 lllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv-~~G~~~~~~~~ 272 (643)
|||||||+|||+.++..+++.|++. .| |||++|||+. .+.++||++++|++|+++ +.|+.++..++
T Consensus 649 LLLDEPT~~LD~~s~~~l~~~L~~~---~g-tvIivSHd~~-~i~~~~drv~~l~~G~i~~~~g~~~~~~~~ 715 (718)
T PLN03073 649 LLLDEPSNHLDLDAVEALIQGLVLF---QG-GVLMVSHDEH-LISGSVDELWVVSEGKVTPFHGTFHDYKKT 715 (718)
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHHc---CC-EEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCCHHHHHHH
Confidence 9999999999999999998888764 24 9999999997 488899999999999998 78887765443
|
|
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=276.27 Aligned_cols=218 Identities=27% Similarity=0.448 Sum_probs=180.1
Q ss_pred hhhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCC--------ch--
Q 006505 43 EELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPID--------KA-- 112 (643)
Q Consensus 43 ~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~--------~~-- 112 (643)
.|+++++++++.|+...--+||||++.|||+++|+|.|||||||||++|++++.|+.|+|.+..++-. +.
T Consensus 4 ~PLL~V~~lsk~Yg~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeR 83 (258)
T COG4107 4 KPLLSVSGLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAER 83 (258)
T ss_pred CcceeehhhhhhhCCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999764321 11
Q ss_pred --hhcccEEEEccCCC--CCC----CCCHHHHHHH-HHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCH
Q 006505 113 --QFRKVSGYVTQRDT--LFP----LLTVEETLMF-SAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISG 183 (643)
Q Consensus 113 --~~~~~i~yv~Q~~~--l~~----~lTv~E~l~~-~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSG 183 (643)
-.|...|+|.|++. +-. .-.+.|-++- +.+ .-...++.+.++|+++.++..+ + |..++..||
T Consensus 84 R~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~R-----HYG~iR~~a~~WL~~VEI~~~R---i-DD~PrtFSG 154 (258)
T COG4107 84 RRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGAR-----HYGNIRAEAQDWLEEVEIDLDR---I-DDLPRTFSG 154 (258)
T ss_pred HHHhhhccceeecCccccceeeeccCCccchhHHhhhhh-----hhhhHHHHHHHHHHhcccCccc---c-cCcccccch
Confidence 12445799999963 322 2234444331 111 1224566788899999886432 2 568899999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEe
Q 006505 184 GERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHH 263 (643)
Q Consensus 184 GerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 263 (643)
|+|||+.|||-|++.|++.|+||||.|||..-+.++.++++.+..+.|.+++++|||... +.-++||.++|++|++++.
T Consensus 155 GMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~V-arLla~rlmvmk~g~vve~ 233 (258)
T COG4107 155 GMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAV-ARLLADRLMVMKQGQVVES 233 (258)
T ss_pred HHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHH-HHHhhhcceeecCCCEecc
Confidence 999999999999999999999999999999999999999999999999999999999863 5567999999999999999
Q ss_pred cChhHHH
Q 006505 264 GTVDLLS 270 (643)
Q Consensus 264 G~~~~~~ 270 (643)
|-.+.+.
T Consensus 234 GLTDrvL 240 (258)
T COG4107 234 GLTDRVL 240 (258)
T ss_pred ccccccc
Confidence 9887664
|
|
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-35 Score=286.39 Aligned_cols=205 Identities=22% Similarity=0.327 Sum_probs=182.3
Q ss_pred cccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEccCCCCCCCCCH
Q 006505 54 SDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTV 133 (643)
Q Consensus 54 ~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv 133 (643)
......+|+||||++++||.+||+|+||||||||||+|+|.++|++|+|.++|+-...-.+ .-.+-|.+|.
T Consensus 36 ~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~l---------g~Gf~pelTG 106 (249)
T COG1134 36 KVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIEL---------GAGFDPELTG 106 (249)
T ss_pred CcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhc---------ccCCCcccch
Confidence 3456679999999999999999999999999999999999999999999999964321111 1234567999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Q 006505 134 EETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDS 213 (643)
Q Consensus 134 ~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~ 213 (643)
+||+.+-+.+. +.+.++.+++++++++.-+|.+..| .+++.+|.||+-|++.|.+...+|+|||+||-.+--|+
T Consensus 107 reNi~l~~~~~-G~~~~ei~~~~~eIieFaELG~fi~-----~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~ 180 (249)
T COG1134 107 RENIYLRGLIL-GLTRKEIDEKVDEIIEFAELGDFID-----QPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDA 180 (249)
T ss_pred HHHHHHHHHHh-CccHHHHHHHHHHHHHHHHHHHHhh-----CchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCH
Confidence 99999877653 5678999999999999999998884 47899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHHHHHH
Q 006505 214 TSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSVSLRM 275 (643)
Q Consensus 214 ~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~ 275 (643)
.-+++-.+.++++.++ ++|||++|||++ .+.++||++++|++|++...|+++++.++++.
T Consensus 181 ~F~~K~~~rl~e~~~~-~~tiv~VSHd~~-~I~~~Cd~~i~l~~G~i~~~G~~~~vi~~Y~~ 240 (249)
T COG1134 181 AFQEKCLERLNELVEK-NKTIVLVSHDLG-AIKQYCDRAIWLEHGQIRMEGSPEEVIPAYEE 240 (249)
T ss_pred HHHHHHHHHHHHHHHc-CCEEEEEECCHH-HHHHhcCeeEEEeCCEEEEcCCHHHHHHHHHH
Confidence 9999999999999775 799999999998 59999999999999999999999999887764
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=342.06 Aligned_cols=198 Identities=22% Similarity=0.277 Sum_probs=164.6
Q ss_pred hhhccccccccc-ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEcc
Q 006505 45 LSKLEEAADSDG-VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQ 123 (643)
Q Consensus 45 ~~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q 123 (643)
.++++|+++.|+ ++++|+|+|+++++||+++|+||||||||||+|+|+|+++|++|+|.+++ ++.++||+|
T Consensus 451 ~i~~~nv~~~~~~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~--------~~~i~~v~Q 522 (659)
T TIGR00954 451 GIKFENIPLVTPNGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA--------KGKLFYVPQ 522 (659)
T ss_pred eEEEEeeEEECCCCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC--------CCcEEEECC
Confidence 467899998884 56799999999999999999999999999999999999999999998864 457999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcC----CCcCCCCCHHHHHHHHHHHHHhcCC
Q 006505 124 RDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVG----DDRVRGISGGERRRVSIGFDVIHDP 199 (643)
Q Consensus 124 ~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg----~~~~~~LSGGerqRv~ia~aL~~~p 199 (643)
++.+++. |++||+.++.........+..+++++++++.+++++..++..| ......||||||||++|||+|+++|
T Consensus 523 ~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p 601 (659)
T TIGR00954 523 RPYMTLG-TLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKP 601 (659)
T ss_pred CCCCCCc-CHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCC
Confidence 9998887 9999998754221000001123467889999999876654221 1245789999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeC
Q 006505 200 KVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLAN 257 (643)
Q Consensus 200 ~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 257 (643)
++++|||||+|||+.+...+.+.+++ .|+|+|+++|+++ ..+.+|++++|+.
T Consensus 602 ~illLDEpts~LD~~~~~~l~~~l~~----~~~tvI~isH~~~--~~~~~d~il~l~~ 653 (659)
T TIGR00954 602 QFAILDECTSAVSVDVEGYMYRLCRE----FGITLFSVSHRKS--LWKYHEYLLYMDG 653 (659)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHH----cCCEEEEEeCchH--HHHhCCEEEEEeC
Confidence 99999999999999999999998865 3899999999986 3588999999973
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-35 Score=336.48 Aligned_cols=205 Identities=28% Similarity=0.368 Sum_probs=165.2
Q ss_pred hhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEccC
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQR 124 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~ 124 (643)
++++++++++|+.+++|+||||++++|++++|+||||||||||||+|+|+.+|++|+|.++|.. .++|++|+
T Consensus 3 ~l~i~~ls~~~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~--------~~~~l~q~ 74 (635)
T PRK11147 3 LISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDL--------IVARLQQD 74 (635)
T ss_pred EEEEeeEEEEeCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCC--------EEEEeccC
Confidence 4678999999999999999999999999999999999999999999999999999999998732 25677775
Q ss_pred CCCCCCCCHHHHHHH------------------------------HHHhc--CC-CCHHHHHHHHHHHHHHcCChhhhhh
Q 006505 125 DTLFPLLTVEETLMF------------------------------SAKLR--LR-LPQAQLRARVKSLVKELGLEHVAMA 171 (643)
Q Consensus 125 ~~l~~~lTv~E~l~~------------------------------~~~~~--~~-~~~~~~~~~v~~~l~~lgl~~~~~~ 171 (643)
+......+|.+++.. ...+. .. ....+.+++++++++.+|+..
T Consensus 75 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~---- 150 (635)
T PRK11147 75 PPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDP---- 150 (635)
T ss_pred CCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCC----
Confidence 433233455554321 11000 00 001123457889999999862
Q ss_pred hcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCE
Q 006505 172 RVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNS 251 (643)
Q Consensus 172 ~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~ 251 (643)
++++.+|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++ +.|||++|||+. .+.++||+
T Consensus 151 ---~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~----~~tvlivsHd~~-~l~~~~d~ 222 (635)
T PRK11147 151 ---DAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF----QGSIIFISHDRS-FIRNMATR 222 (635)
T ss_pred ---CCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC----CCEEEEEeCCHH-HHHHhcCe
Confidence 4467899999999999999999999999999999999999999999999876 359999999997 48889999
Q ss_pred EEEEeCCeEE-EecChhHH
Q 006505 252 ILMLANGSVL-HHGTVDLL 269 (643)
Q Consensus 252 v~~L~~G~iv-~~G~~~~~ 269 (643)
|++|++|+++ +.|+.++.
T Consensus 223 i~~L~~G~i~~~~g~~~~~ 241 (635)
T PRK11147 223 IVDLDRGKLVSYPGNYDQY 241 (635)
T ss_pred EEEEECCEEEEecCCHHHH
Confidence 9999999997 56887653
|
|
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=269.37 Aligned_cols=191 Identities=27% Similarity=0.367 Sum_probs=169.9
Q ss_pred hhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCC---ccEEEECCCcCCc-hhhcccEEEE
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQ---SGSTFVNGSPIDK-AQFRKVSGYV 121 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~---~G~I~~~g~~~~~-~~~~~~i~yv 121 (643)
..++|++.+-++.-.|.|+|++|.+||++.|||||||||||||..+.|.+.+. +|++++|++.++. ...++++|..
T Consensus 3 l~l~nvsl~l~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiL 82 (213)
T COG4136 3 LCLKNVSLRLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGIL 82 (213)
T ss_pred eeeeeeeecCCCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeee
Confidence 45678888888999999999999999999999999999999999999999886 9999999998864 4567899999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCE
Q 006505 122 TQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKV 201 (643)
Q Consensus 122 ~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~i 201 (643)
+||+.+||+++|.+||.|+..-.. ..+.+++.++..|++.||....+ +.+.+||||||-||++-|+|+..|+.
T Consensus 83 FQD~lLFphlsVg~Nl~fAlp~~~--KG~aRr~~a~aAL~~~gL~g~f~-----~dP~tlSGGQrARvaL~R~Lla~Pk~ 155 (213)
T COG4136 83 FQDALLFPHLSVGQNLLFALPATL--KGNARRNAANAALERSGLDGAFH-----QDPATLSGGQRARVALLRALLAQPKA 155 (213)
T ss_pred ecccccccccccccceEEecCccc--ccHHHHhhHHHHHHHhccchhhh-----cChhhcCcchHHHHHHHHHHHhCcce
Confidence 999999999999999998753222 23355667899999999998774 47789999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCch
Q 006505 202 LILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGF 243 (643)
Q Consensus 202 lllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~ 243 (643)
++||||+|.||..-+.++.+..-.-.+..|..+|.+|||...
T Consensus 156 lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~D 197 (213)
T COG4136 156 LLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQD 197 (213)
T ss_pred eeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEeccccc
Confidence 999999999999999999999877777789999999999863
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=279.64 Aligned_cols=159 Identities=24% Similarity=0.337 Sum_probs=134.3
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEccCCCCCCCCCHHHH
Q 006505 57 VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTVEET 136 (643)
Q Consensus 57 ~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~ 136 (643)
.+++|+|+|+++++|++++|+||||||||||||+|.+ ++|++.++|... ...++.++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~----~~G~v~~~~~~~--~~~~~~~~~~~q------------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY----ASGKARLISFLP--KFSRNKLIFIDQ------------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh----cCCcEEECCccc--ccccccEEEEhH-------------
Confidence 4679999999999999999999999999999999963 689999988732 112345788877
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHcCChhh-hhhhcCCCcCCCCCHHHHHHHHHHHHHhcC--CCEEEEeCCCCCCCH
Q 006505 137 LMFSAKLRLRLPQAQLRARVKSLVKELGLEHV-AMARVGDDRVRGISGGERRRVSIGFDVIHD--PKVLILDEPTSGLDS 213 (643)
Q Consensus 137 l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~-~~~~vg~~~~~~LSGGerqRv~ia~aL~~~--p~illlDEPtsgLD~ 213 (643)
.++++.+++... . +++++.||||||||++||++|+.+ |++++|||||+|||+
T Consensus 68 --------------------~~~l~~~~L~~~~~-----~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~ 122 (176)
T cd03238 68 --------------------LQFLIDVGLGYLTL-----GQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQ 122 (176)
T ss_pred --------------------HHHHHHcCCCcccc-----CCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCH
Confidence 235677787642 3 446789999999999999999999 999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEE
Q 006505 214 TSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLH 262 (643)
Q Consensus 214 ~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~ 262 (643)
.++..+.+.|+++++ .|+|||++||+++. + +.+|++++|.+|+...
T Consensus 123 ~~~~~l~~~l~~~~~-~g~tvIivSH~~~~-~-~~~d~i~~l~~g~~~~ 168 (176)
T cd03238 123 QDINQLLEVIKGLID-LGNTVILIEHNLDV-L-SSADWIIDFGPGSGKS 168 (176)
T ss_pred HHHHHHHHHHHHHHh-CCCEEEEEeCCHHH-H-HhCCEEEEECCCCCCC
Confidence 999999999999976 59999999999863 4 6899999997655433
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-35 Score=274.98 Aligned_cols=188 Identities=29% Similarity=0.429 Sum_probs=167.7
Q ss_pred hhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc--hhhcccEEEEcc
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK--AQFRKVSGYVTQ 123 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~--~~~~~~i~yv~Q 123 (643)
+..++++-..+.+.++.++||++.+||++-|.||||||||||||+|+|+.+|++|+|+++|.+++. +.+++.+-|+-.
T Consensus 3 L~a~~L~~~R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH 82 (209)
T COG4133 3 LEAENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGH 82 (209)
T ss_pred chhhhhhhccCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhc
Confidence 346777888899999999999999999999999999999999999999999999999999998854 346677889999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEE
Q 006505 124 RDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLI 203 (643)
Q Consensus 124 ~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~ill 203 (643)
.+.+-+.+||.|||.|..++.... ....+.+.++.+||....|. +++.||-||||||+|||-+++.+++.|
T Consensus 83 ~~giK~eLTa~ENL~F~~~~~~~~----~~~~i~~Al~~vgL~g~~dl-----p~~~LSAGQqRRvAlArL~ls~~pLWi 153 (209)
T COG4133 83 QPGIKTELTALENLHFWQRFHGSG----NAATIWEALAQVGLAGLEDL-----PVGQLSAGQQRRVALARLWLSPAPLWI 153 (209)
T ss_pred cccccchhhHHHHHHHHHHHhCCC----chhhHHHHHHHcCccccccc-----chhhcchhHHHHHHHHHHHcCCCCcee
Confidence 999999999999999987765431 23468899999999887755 567999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCch
Q 006505 204 LDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGF 243 (643)
Q Consensus 204 lDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~ 243 (643)
||||+++||......+-.++..-+.+ |-.||.+||||..
T Consensus 154 LDEP~taLDk~g~a~l~~l~~~H~~~-GGiVllttHq~l~ 192 (209)
T COG4133 154 LDEPFTALDKEGVALLTALMAAHAAQ-GGIVLLTTHQPLP 192 (209)
T ss_pred ecCcccccCHHHHHHHHHHHHHHhcC-CCEEEEecCCccC
Confidence 99999999999999999999998875 8899999999864
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-35 Score=361.56 Aligned_cols=204 Identities=27% Similarity=0.441 Sum_probs=172.8
Q ss_pred hhhcccccccccc---cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEE
Q 006505 45 LSKLEEAADSDGV---RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYV 121 (643)
Q Consensus 45 ~~~~~~~~~~~~~---~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv 121 (643)
.++++|++.+|+. +++|+|+|+++++||.++|+||||||||||+++|.|.++|.+|.+. .+++.++||
T Consensus 614 ~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~---------~~~~~Iayv 684 (1495)
T PLN03232 614 AISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV---------VIRGSVAYV 684 (1495)
T ss_pred cEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE---------EecCcEEEE
Confidence 3668888888863 5799999999999999999999999999999999999999988763 346789999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhh-------hhhcCCCcCCCCCHHHHHHHHHHHH
Q 006505 122 TQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVA-------MARVGDDRVRGISGGERRRVSIGFD 194 (643)
Q Consensus 122 ~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~-------~~~vg~~~~~~LSGGerqRv~ia~a 194 (643)
+|++.+|.. |++|||.|+.. .+ +++.+++++..++.+.. +|.+|+ ....||||||||++||||
T Consensus 685 ~Q~p~Lf~g-TIreNI~fg~~----~~----~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe-~G~~LSGGQkQRIaLARA 754 (1495)
T PLN03232 685 PQVSWIFNA-TVRENILFGSD----FE----SERYWRAIDVTALQHDLDLLPGRDLTEIGE-RGVNISGGQKQRVSMARA 754 (1495)
T ss_pred cCccccccc-cHHHHhhcCCc----cC----HHHHHHHHHHhCCHHHHHhCCCCCCceecC-CCcccCHHHHHHHHHHHH
Confidence 999999987 99999998632 12 34566777777765432 466654 466899999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 195 VIHDPKVLILDEPTSGLDSTSALQIIDM-LKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 195 L~~~p~illlDEPtsgLD~~~~~~i~~~-L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
+.++|+|++||||||+||+.++.++++. ++... .|+|+|++||+++ ..+.+|+|++|++|++++.|+.+++.+
T Consensus 755 ly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l--~~kT~IlvTH~~~--~l~~aD~Ii~L~~G~i~~~Gt~~eL~~ 828 (1495)
T PLN03232 755 VYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDEL--KGKTRVLVTNQLH--FLPLMDRIILVSEGMIKEEGTFAELSK 828 (1495)
T ss_pred HhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhh--cCCEEEEEECChh--hHHhCCEEEEEeCCEEEEecCHHHHHh
Confidence 9999999999999999999999988765 55543 4899999999986 467899999999999999999998753
|
|
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=275.39 Aligned_cols=153 Identities=42% Similarity=0.718 Sum_probs=140.2
Q ss_pred cccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEEEEccC
Q 006505 48 LEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGYVTQR 124 (643)
Q Consensus 48 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~yv~Q~ 124 (643)
++++.++|.++.+++++|+++++||+++|+||||||||||+++|+|.++|++|+|+++|.++.. ...++.++|++|
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~q- 80 (157)
T cd00267 2 IENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQ- 80 (157)
T ss_pred eEEEEEEeCCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEee-
Confidence 4567778877789999999999999999999999999999999999999999999999987643 345677899998
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 006505 125 DTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLIL 204 (643)
Q Consensus 125 ~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illl 204 (643)
|||||+||++||++++.+|++++|
T Consensus 81 --------------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~il 104 (157)
T cd00267 81 --------------------------------------------------------LSGGQRQRVALARALLLNPDLLLL 104 (157)
T ss_pred --------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCe
Q 006505 205 DEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGS 259 (643)
Q Consensus 205 DEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 259 (643)
||||+|||..++..+.+.++++++. ++|++++||+++ ++...+|+++++++|+
T Consensus 105 DEp~~~lD~~~~~~l~~~l~~~~~~-~~tii~~sh~~~-~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 105 DEPTSGLDPASRERLLELLRELAEE-GRTVIIVTHDPE-LAELAADRVIVLKDGK 157 (157)
T ss_pred eCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHH-HHHHhCCEEEEEeCcC
Confidence 9999999999999999999999875 899999999997 4778889999999875
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-35 Score=331.01 Aligned_cols=190 Identities=27% Similarity=0.408 Sum_probs=160.5
Q ss_pred ccccccccc-ceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEE-----------ECCCcCCch--h--
Q 006505 50 EAADSDGVR-RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTF-----------VNGSPIDKA--Q-- 113 (643)
Q Consensus 50 ~~~~~~~~~-~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~-----------~~g~~~~~~--~-- 113 (643)
+++++|+.+ .+|++++ .+++||+++|+||||||||||||+|+|+++|++|+|. ++|+++... .
T Consensus 78 ~~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~ 156 (590)
T PRK13409 78 EPVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLY 156 (590)
T ss_pred CceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHh
Confidence 377889874 6999999 9999999999999999999999999999999999997 999887431 1
Q ss_pred -hcccEEEEccCCCCCCC---CCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHH
Q 006505 114 -FRKVSGYVTQRDTLFPL---LTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRV 189 (643)
Q Consensus 114 -~~~~i~yv~Q~~~l~~~---lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv 189 (643)
.+..+++.+|.....|. .||+|++... +.+++++++++.+||++..+ +.+.+|||||||||
T Consensus 157 ~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~----------~~~~~~~~~l~~l~l~~~~~-----~~~~~LSgGe~qrv 221 (590)
T PRK13409 157 NGEIKVVHKPQYVDLIPKVFKGKVRELLKKV----------DERGKLDEVVERLGLENILD-----RDISELSGGELQRV 221 (590)
T ss_pred ccCcceeecccchhhhhhhhcchHHHHHHhh----------hHHHHHHHHHHHcCCchhhc-----CChhhCCHHHHHHH
Confidence 12335666665433332 2999998631 13457889999999987764 46779999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCC
Q 006505 190 SIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANG 258 (643)
Q Consensus 190 ~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 258 (643)
+||++|+.+|++|+|||||++||+.++..+.+.|+++++ |+|||+++|+++ .+..++|++++|++|
T Consensus 222 ~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~--g~tvIivsHd~~-~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 222 AIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE--GKYVLVVEHDLA-VLDYLADNVHIAYGE 287 (590)
T ss_pred HHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC--CCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999999999975 899999999997 588999999999863
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=359.18 Aligned_cols=203 Identities=29% Similarity=0.467 Sum_probs=174.3
Q ss_pred hhhcccccccccc---cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCc-cEEEECCCcCCchhhcccEEE
Q 006505 45 LSKLEEAADSDGV---RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQS-GSTFVNGSPIDKAQFRKVSGY 120 (643)
Q Consensus 45 ~~~~~~~~~~~~~---~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~-G~I~~~g~~~~~~~~~~~i~y 120 (643)
.+.++|++.+|+. +++|+|+|+++++||.++|+||||||||||+++|.|.++|.+ |+|.+ ++.++|
T Consensus 614 ~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l----------~~~Iay 683 (1622)
T PLN03130 614 AISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI----------RGTVAY 683 (1622)
T ss_pred ceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE----------cCeEEE
Confidence 4678888888863 579999999999999999999999999999999999999999 99975 456999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhh-------hhhcCCCcCCCCCHHHHHHHHHHH
Q 006505 121 VTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVA-------MARVGDDRVRGISGGERRRVSIGF 193 (643)
Q Consensus 121 v~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~-------~~~vg~~~~~~LSGGerqRv~ia~ 193 (643)
|+|++.++.. |++|||.|+.. . .+++.+++++..+|.+.. +|.+|+ ....||||||||++|||
T Consensus 684 v~Q~p~Lfng-TIreNI~fg~~----~----d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe-~G~~LSGGQKQRIaLAR 753 (1622)
T PLN03130 684 VPQVSWIFNA-TVRDNILFGSP----F----DPERYERAIDVTALQHDLDLLPGGDLTEIGE-RGVNISGGQKQRVSMAR 753 (1622)
T ss_pred EcCccccCCC-CHHHHHhCCCc----c----cHHHHHHHHHHhCcHHHHHhCCCcccccccC-CCCCCCHHHHHHHHHHH
Confidence 9999999986 99999998632 1 245677788877776533 566654 45689999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 194 DVIHDPKVLILDEPTSGLDSTSALQIID-MLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 194 aL~~~p~illlDEPtsgLD~~~~~~i~~-~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
|+.++|+|++||||||+||+.++.++++ .++... .|+|+|++||+++ ..+.+|+|++|++|++++.|+.+++.+
T Consensus 754 Aly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l--~~kTvIlVTH~l~--~l~~aD~Ii~L~~G~i~e~Gt~~eL~~ 828 (1622)
T PLN03130 754 AVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL--RGKTRVLVTNQLH--FLSQVDRIILVHEGMIKEEGTYEELSN 828 (1622)
T ss_pred HHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh--cCCEEEEEECCHh--HHHhCCEEEEEeCCEEEEeCCHHHHHh
Confidence 9999999999999999999999998865 566554 3899999999985 568899999999999999999998753
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=300.35 Aligned_cols=213 Identities=30% Similarity=0.454 Sum_probs=178.5
Q ss_pred cccccccc-cccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEEEEcc
Q 006505 48 LEEAADSD-GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGYVTQ 123 (643)
Q Consensus 48 ~~~~~~~~-~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~yv~Q 123 (643)
.++++..| +.+++|+++||++++|+.+||+||||+||||++++|-..+++.+|.|.+||+++.. ...|+.||.|||
T Consensus 265 F~~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQ 344 (497)
T COG5265 265 FINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQ 344 (497)
T ss_pred EEEEEeeccccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcc
Confidence 34555555 45789999999999999999999999999999999999999999999999998843 568899999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCCHHHHHH-----HHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcC
Q 006505 124 RDTLFPLLTVEETLMFSAKLRLRLPQAQLRA-----RVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHD 198 (643)
Q Consensus 124 ~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~-----~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~ 198 (643)
|..||.+ |...|+.++.. ..+.++..+ .+...++. +.+-.++.||.+. -.|||||||||+|||+++.+
T Consensus 345 DtvLFND-ti~yni~ygr~---~at~eev~aaa~~aqi~~fi~~--lP~gy~t~Vgerg-lklSggekqrvaiar~ilk~ 417 (497)
T COG5265 345 DTVLFND-TIAYNIKYGRP---DATAEEVGAAAEAAQIHDFIQS--LPEGYDTGVGERG-LKLSGGEKQRVAIARTILKN 417 (497)
T ss_pred cceehhh-hHHHHHhccCc---cccHHHHHHHHHHhhhhHHHHh--Cchhhhcccchhe-eeccCchHHHHHHHHHHhcC
Confidence 9999987 99999988631 123333222 22233332 3455678887543 46999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 199 PKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 199 p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
|+||+|||.||+||..+.+++...|+++++ |+|.+++.|.++. + --+|.|+||++|+|++.|..+++..
T Consensus 418 p~il~~deatsaldt~te~~iq~~l~~~~~--~rttlviahrlst-i-~~adeiivl~~g~i~erg~h~~ll~ 486 (497)
T COG5265 418 PPILILDEATSALDTHTEQAIQAALREVSA--GRTTLVIAHRLST-I-IDADEIIVLDNGRIVERGTHEELLA 486 (497)
T ss_pred CCEEEEehhhhHhhhhHHHHHHHHHHHHhC--CCeEEEEeehhhh-c-cCCceEEEeeCCEEEecCcHHHHHH
Confidence 999999999999999999999999999983 8999999999974 4 5699999999999999999999875
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-34 Score=352.49 Aligned_cols=205 Identities=21% Similarity=0.363 Sum_probs=169.6
Q ss_pred hhhcccccccccc--cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEc
Q 006505 45 LSKLEEAADSDGV--RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVT 122 (643)
Q Consensus 45 ~~~~~~~~~~~~~--~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~ 122 (643)
.++++|++..|+. +++|+|+|+++++||+++|+||||||||||+++|+|.++|++|+|.++| .++||+
T Consensus 636 ~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g----------~i~yv~ 705 (1522)
T TIGR00957 636 SITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG----------SVAYVP 705 (1522)
T ss_pred cEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC----------EEEEEc
Confidence 4678899988864 5799999999999999999999999999999999999999999999987 489999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChh-------hhhhhcCCCcCCCCCHHHHHHHHHHHHH
Q 006505 123 QRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEH-------VAMARVGDDRVRGISGGERRRVSIGFDV 195 (643)
Q Consensus 123 Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~-------~~~~~vg~~~~~~LSGGerqRv~ia~aL 195 (643)
|++.+++ .|++||+.|+... .+ ++.+++++..++.+ -.++.+| +.+..||||||||++||||+
T Consensus 706 Q~~~l~~-~Ti~eNI~~g~~~----~~----~~~~~~~~~~~l~~~l~~~~~g~~t~ig-~~g~~LSGGQkqRiaLARAl 775 (1522)
T TIGR00957 706 QQAWIQN-DSLRENILFGKAL----NE----KYYQQVLEACALLPDLEILPSGDRTEIG-EKGVNLSGGQKQRVSLARAV 775 (1522)
T ss_pred CCccccC-CcHHHHhhcCCcc----CH----HHHHHHHHHhCCHHHHHhcCCCCCceec-CCCCCCCHHHHHHHHHHHHH
Confidence 9998876 5999999986321 12 22333333333322 1234454 45789999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 196 IHDPKVLILDEPTSGLDSTSALQIIDMLKVMA-ETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 196 ~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~-~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
.++|++++||||||+||+.++..+.+.+.+.. ...|+|+|++||+++. .+.+|+|++|++|+++..|+++++.+
T Consensus 776 ~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~--l~~~D~ii~l~~G~i~~~g~~~~l~~ 850 (1522)
T TIGR00957 776 YSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISY--LPQVDVIIVMSGGKISEMGSYQELLQ 850 (1522)
T ss_pred hcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhh--hhhCCEEEEecCCeEEeeCCHHHHHh
Confidence 99999999999999999999999999997532 1247999999999963 45699999999999999999988753
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=348.02 Aligned_cols=191 Identities=29% Similarity=0.458 Sum_probs=159.5
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEccCCCCCCCCCHHHH
Q 006505 57 VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTVEET 136 (643)
Q Consensus 57 ~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~ 136 (643)
.+++|+|+|+++++||+++|+|||||||||||++|+|..+|++|+|.++| .++||+|++.+++. ||+||
T Consensus 438 ~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g----------~iayv~Q~~~l~~~-Ti~eN 506 (1490)
T TIGR01271 438 VTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG----------RISFSPQTSWIMPG-TIKDN 506 (1490)
T ss_pred cCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC----------EEEEEeCCCccCCc-cHHHH
Confidence 36799999999999999999999999999999999999999999999998 38999999999986 99999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHcCChhh-------hhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 006505 137 LMFSAKLRLRLPQAQLRARVKSLVKELGLEHV-------AMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTS 209 (643)
Q Consensus 137 l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~-------~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPts 209 (643)
+.|+... .. ++.+++++..+|.+. .+|.+| +.+..||||||||++||||++.+|+++||||||+
T Consensus 507 I~~g~~~----~~----~~~~~~~~~~~L~~~l~~l~~g~~t~vg-~~g~~LSgGqkqRi~lARAl~~~~~illLDep~s 577 (1490)
T TIGR01271 507 IIFGLSY----DE----YRYTSVIKACQLEEDIALFPEKDKTVLG-EGGITLSGGQRARISLARAVYKDADLYLLDSPFT 577 (1490)
T ss_pred HHhcccc----ch----HHHHHHHHHHhHHHHHHhcccccccccc-CcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 9987421 11 122233333333221 134454 3478999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHH-HHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 210 GLDSTSALQIIDM-LKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 210 gLD~~~~~~i~~~-L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
|||+.++.++.+. ++++. .|+|+|++||+++. + +.+|+|++|++|+++..|+++++.+
T Consensus 578 aLD~~~~~~i~~~~l~~~~--~~~tvilvtH~~~~-~-~~ad~ii~l~~g~i~~~g~~~~l~~ 636 (1490)
T TIGR01271 578 HLDVVTEKEIFESCLCKLM--SNKTRILVTSKLEH-L-KKADKILLLHEGVCYFYGTFSELQA 636 (1490)
T ss_pred cCCHHHHHHHHHHHHHHHh--cCCeEEEEeCChHH-H-HhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999984 66665 38999999999963 4 5699999999999999999988753
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=340.65 Aligned_cols=192 Identities=26% Similarity=0.419 Sum_probs=155.7
Q ss_pred cccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEccCCCCCCCCCHHH
Q 006505 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTVEE 135 (643)
Q Consensus 56 ~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E 135 (643)
+.+++|+|+|+++++||+++|+|||||||||||++|+|.++|++|+|.++ +.++|++|++.+++ .|++|
T Consensus 671 ~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~----------~~i~yv~Q~~~l~~-~Tv~e 739 (1560)
T PTZ00243 671 EPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE----------RSIAYVPQQAWIMN-ATVRG 739 (1560)
T ss_pred CCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC----------CeEEEEeCCCccCC-CcHHH
Confidence 55779999999999999999999999999999999999999999999863 46999999998876 59999
Q ss_pred HHHHHHHhcCCCCHHHHH-----HHHHHHHHHc--CChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q 006505 136 TLMFSAKLRLRLPQAQLR-----ARVKSLVKEL--GLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPT 208 (643)
Q Consensus 136 ~l~~~~~~~~~~~~~~~~-----~~v~~~l~~l--gl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPt 208 (643)
|+.|+... ..+... ...++.++.+ |++ +.+ ++.+..||||||||++|||||+.+|++++|||||
T Consensus 740 nI~~~~~~----~~~~~~~~~~~~~l~~~l~~l~~g~~----t~i-~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~ 810 (1560)
T PTZ00243 740 NILFFDEE----DAARLADAVRVSQLEADLAQLGGGLE----TEI-GEKGVNLSGGQKARVSLARAVYANRDVYLLDDPL 810 (1560)
T ss_pred HHHcCChh----hHHHHHHHHHHhhhHHHHHHhhccch----HHh-cCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCcc
Confidence 99985211 111111 1122333443 332 333 3467899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 209 SGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 209 sgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
++||+.++..+++.+..... .|+|+|++||+++. .+.+|+|++|++|++++.|+.+++.
T Consensus 811 saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~--~~~ad~ii~l~~G~i~~~G~~~~l~ 869 (1560)
T PTZ00243 811 SALDAHVGERVVEECFLGAL-AGKTRVLATHQVHV--VPRADYVVALGDGRVEFSGSSADFM 869 (1560)
T ss_pred ccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCCHHH--HHhCCEEEEEECCEEEEecCHHHHH
Confidence 99999999999875432223 38999999999863 4789999999999999999998875
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-33 Score=307.86 Aligned_cols=205 Identities=35% Similarity=0.448 Sum_probs=171.9
Q ss_pred hhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEccC
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQR 124 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~ 124 (643)
++.++++++.|+.+++++|+|+++.+|+.+||+|+||||||||||+|+|...|++|+|...+. -+++|++|+
T Consensus 3 ~i~~~~ls~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~--------~~v~~l~Q~ 74 (530)
T COG0488 3 MITLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG--------LRVGYLSQE 74 (530)
T ss_pred eEEEeeeEEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC--------ceEEEeCCC
Confidence 467889999999999999999999999999999999999999999999999999999987542 248999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCC-----------------------------CHHHHHHHHHHHHHHcCChhhhhhhcCC
Q 006505 125 DTLFPLLTVEETLMFSAKLRLRL-----------------------------PQAQLRARVKSLVKELGLEHVAMARVGD 175 (643)
Q Consensus 125 ~~l~~~lTv~E~l~~~~~~~~~~-----------------------------~~~~~~~~v~~~l~~lgl~~~~~~~vg~ 175 (643)
+.+.+..||.+.+.-+..-.... ..-+.+.+++.++..+|+.+. +
T Consensus 75 ~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~----- 148 (530)
T COG0488 75 PPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-D----- 148 (530)
T ss_pred CCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-c-----
Confidence 99999999999887543210000 000123567788888888764 3
Q ss_pred CcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEE
Q 006505 176 DRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILML 255 (643)
Q Consensus 176 ~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L 255 (643)
+++.+||||||.||+||++|+.+|++|||||||++||..+..-+-+.|++. .| |+|++|||-.. +-+.|++|+-+
T Consensus 149 ~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~---~g-tviiVSHDR~F-Ld~V~t~I~~l 223 (530)
T COG0488 149 RPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY---PG-TVIVVSHDRYF-LDNVATHILEL 223 (530)
T ss_pred CchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC---CC-cEEEEeCCHHH-HHHHhhheEEe
Confidence 366799999999999999999999999999999999999999999999864 47 99999999875 88899999999
Q ss_pred eCCeE-EEecChhH
Q 006505 256 ANGSV-LHHGTVDL 268 (643)
Q Consensus 256 ~~G~i-v~~G~~~~ 268 (643)
+.|++ .|.|+.+.
T Consensus 224 d~g~l~~y~Gny~~ 237 (530)
T COG0488 224 DRGKLTPYKGNYSS 237 (530)
T ss_pred cCCceeEecCCHHH
Confidence 99976 45666554
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-33 Score=320.58 Aligned_cols=215 Identities=22% Similarity=0.263 Sum_probs=162.3
Q ss_pred hhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCC---CCCccEEEECCCcC-----Cc----
Q 006505 44 ELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKL---TPQSGSTFVNGSPI-----DK---- 111 (643)
Q Consensus 44 ~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~---~~~~G~I~~~g~~~-----~~---- 111 (643)
.+++++|++++|+.+++|+|+|++|++|+.+||+||||||||||||+|+|+. .|.+|+|.+.+++. +.
T Consensus 176 ~~I~i~nls~~y~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v 255 (718)
T PLN03073 176 KDIHMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCV 255 (718)
T ss_pred eeEEEceEEEEeCCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHH
Confidence 4678999999999999999999999999999999999999999999999964 57789997655432 11
Q ss_pred --------hhhcccEEEEccCCCCCCCCCHHHHHHHHHHh----------------cCC-CCHHHHHHHHHHHHHHcCCh
Q 006505 112 --------AQFRKVSGYVTQRDTLFPLLTVEETLMFSAKL----------------RLR-LPQAQLRARVKSLVKELGLE 166 (643)
Q Consensus 112 --------~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~----------------~~~-~~~~~~~~~v~~~l~~lgl~ 166 (643)
...++.++|++|++.+... ++.++....... +.. ......++++.++++.+|+.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~q~~~l~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~ 334 (718)
T PLN03073 256 LNTDIERTQLLEEEAQLVAQQRELEFE-TETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFT 334 (718)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHhhhc-ccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCC
Confidence 0012336777776433221 111111100000 000 00112345677788888885
Q ss_pred -hhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHH
Q 006505 167 -HVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRI 245 (643)
Q Consensus 167 -~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i 245 (643)
+.. ++++.+|||||||||+||++|+.+|++|||||||++||+.+...+.+.|+++ +.|||++|||.. .+
T Consensus 335 ~~~~-----~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~----~~tviivsHd~~-~l 404 (718)
T PLN03073 335 PEMQ-----VKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW----PKTFIVVSHARE-FL 404 (718)
T ss_pred hHHH-----hCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc----CCEEEEEECCHH-HH
Confidence 333 3467899999999999999999999999999999999999999999999875 679999999987 47
Q ss_pred HhhcCEEEEEeCCeEE-EecChhHH
Q 006505 246 VKMFNSILMLANGSVL-HHGTVDLL 269 (643)
Q Consensus 246 ~~~~D~v~~L~~G~iv-~~G~~~~~ 269 (643)
.++||++++|++|++. |.|+.++.
T Consensus 405 ~~~~d~i~~l~~g~i~~~~g~~~~~ 429 (718)
T PLN03073 405 NTVVTDILHLHGQKLVTYKGDYDTF 429 (718)
T ss_pred HHhCCEEEEEECCEEEEeCCCHHHH
Confidence 8899999999999996 67876654
|
|
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.6e-31 Score=269.79 Aligned_cols=192 Identities=23% Similarity=0.352 Sum_probs=137.3
Q ss_pred cccceeeceEEEEecCeEEEEECCCCCCHHHHH-HHHhcCCCCCccEEEECC-------------CcCCchhhc-ccEEE
Q 006505 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLL-EILAGKLTPQSGSTFVNG-------------SPIDKAQFR-KVSGY 120 (643)
Q Consensus 56 ~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL-~~l~g~~~~~~G~I~~~g-------------~~~~~~~~~-~~i~y 120 (643)
....+|+|||+++++||+++|+||||||||||+ ..+.. +|++.+.+ ........+ ...++
T Consensus 6 ~~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (226)
T cd03270 6 AREHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYA-----EGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAI 80 (226)
T ss_pred chhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHH-----HHHHHHhhcccchhhhhhcccCccccccccCCCceE
Confidence 456799999999999999999999999999995 44431 23321110 000001111 12344
Q ss_pred EccCCC--CCCCCCHH---HHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChh-hhhhhcCCCcCCCCCHHHHHHHHHHHH
Q 006505 121 VTQRDT--LFPLLTVE---ETLMFSAKLRLRLPQAQLRARVKSLVKELGLEH-VAMARVGDDRVRGISGGERRRVSIGFD 194 (643)
Q Consensus 121 v~Q~~~--l~~~lTv~---E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~-~~~~~vg~~~~~~LSGGerqRv~ia~a 194 (643)
..|++. +.|..+|. |...+...+. ..+...++ .+.++.+++.+ .. +.++.+||||||||++||++
T Consensus 81 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~~~~~~~-~~~l~~~~l~~~~~-----~~~~~~LSgG~~qrv~lara 151 (226)
T cd03270 81 AIDQKTTSRNPRSTVGTVTEIYDYLRLLF---ARVGIRER-LGFLVDVGLGYLTL-----SRSAPTLSGGEAQRIRLATQ 151 (226)
T ss_pred EecCCCCCCCCCccHHHHHHHHHHHHHHh---hhhhHHHH-HHHHHHCCCCcccc-----cCccCcCCHHHHHHHHHHHH
Confidence 444432 34444554 2222221111 11222233 56899999975 24 55788999999999999999
Q ss_pred HhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEE------eCCeEEEec
Q 006505 195 VIHDP--KVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILML------ANGSVLHHG 264 (643)
Q Consensus 195 L~~~p--~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G 264 (643)
|+.+| ++++|||||+|||+.++..+.+.|+++++ .|.|||++||+++ .+ +.||++++| ++|+++++|
T Consensus 152 l~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~-~g~tii~itH~~~-~~-~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 152 IGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRD-LGNTVLVVEHDED-TI-RAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred HHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHh-CCCEEEEEEeCHH-HH-HhCCEEEEeCCCccccCCEEEecC
Confidence 99998 59999999999999999999999999976 4999999999996 34 699999999 999999876
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-32 Score=252.05 Aligned_cols=134 Identities=46% Similarity=0.788 Sum_probs=121.8
Q ss_pred eeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEEEEccCCCCCCCCCHHHHH
Q 006505 61 LDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGYVTQRDTLFPLLTVEETL 137 (643)
Q Consensus 61 L~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~E~l 137 (643)
|+|||+++++||+++|+|+||||||||+++|+|..+|++|+|.++|+++.. ...++.++|++|++.+++.+||+||
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~- 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN- 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 789999999999999999999999999999999999999999999999865 4567899999999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 006505 138 MFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTS 209 (643)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPts 209 (643)
..+++++++++.+++.+..++.+ ++....||||||||++||+||+.+|++++|||||+
T Consensus 80 -------------~~~~~~~~~l~~l~~~~~~~~~~-~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 -------------ESDERIEEVLKKLGLEDLLDRKI-GQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp -------------HHHHHHHHHHHHTTHGGGTGSBG-TSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred -------------ccccccccccccccccccccccc-ccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 23456889999999988777766 34558999999999999999999999999999996
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-31 Score=317.17 Aligned_cols=213 Identities=25% Similarity=0.320 Sum_probs=183.8
Q ss_pred hhhccccccccccc--ceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEE
Q 006505 45 LSKLEEAADSDGVR--RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSG 119 (643)
Q Consensus 45 ~~~~~~~~~~~~~~--~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~ 119 (643)
-++++|++.+|... .+|||||++|+|||.+||+|+.|||||||.++|-.+..|.+|+|.+||.++.. .++|++++
T Consensus 1138 ~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrls 1217 (1381)
T KOG0054|consen 1138 EIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLS 1217 (1381)
T ss_pred eEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCe
Confidence 36789999999765 79999999999999999999999999999999999999999999999999865 67899999
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhh-------hhhcCCCcCCCCCHHHHHHHHHH
Q 006505 120 YVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVA-------MARVGDDRVRGISGGERRRVSIG 192 (643)
Q Consensus 120 yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~-------~~~vg~~~~~~LSGGerqRv~ia 192 (643)
.+||||.+|.+ |+|+||.=. .+-.++++-+.|+..+|.+.. |..+ .+....+|-||||.+++|
T Consensus 1218 IIPQdPvLFsG-TvR~NLDPf--------~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v-~egG~N~SvGQRQLlCLA 1287 (1381)
T KOG0054|consen 1218 IIPQDPVLFSG-TVRFNLDPF--------DEYSDDEIWEALERCQLKDVVSSLPGGLDSEV-SEGGENFSVGQRQLLCLA 1287 (1381)
T ss_pred eeCCCCceecC-ccccccCcc--------cccCHHHHHHHHHHhChHHHHhhCCcCCCcee-cCCCccCChHHHHHHHHH
Confidence 99999999999 999998621 111234566667776665443 2333 345678999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 193 FDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 193 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
|||+++++||+|||+|++.|+.|-..|.+.||+-= .++|||.+.|..+. +. -+|||+||++|+++++|+|.++.+
T Consensus 1288 RALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F--~dcTVltIAHRl~T-Vm-d~DrVlVld~G~v~EfdsP~~Ll~ 1362 (1381)
T KOG0054|consen 1288 RALLRKSKILVLDEATASVDPETDALIQKTIREEF--KDCTVLTIAHRLNT-VM-DSDRVLVLDAGRVVEFDSPAELLS 1362 (1381)
T ss_pred HHHhccCCEEEEecccccCChHHHHHHHHHHHHHh--cCCeEEEEeeccch-hh-hcCeEEEeeCCeEeecCChHHHHh
Confidence 99999999999999999999999999999999865 37999999999984 54 489999999999999999999874
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=301.78 Aligned_cols=203 Identities=30% Similarity=0.470 Sum_probs=173.8
Q ss_pred hhhccccccccc---ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEE
Q 006505 45 LSKLEEAADSDG---VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYV 121 (643)
Q Consensus 45 ~~~~~~~~~~~~---~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv 121 (643)
.+++++.+.+.+ ..+.|+|||+++++|+++||+||-|||||+||.+|.|-.+..+|+|.++|. ++||
T Consensus 518 ~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs----------iaYv 587 (1381)
T KOG0054|consen 518 AIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS----------VAYV 587 (1381)
T ss_pred eEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe----------EEEe
Confidence 455666655543 344899999999999999999999999999999999999999999999985 8999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhh-------hhhcCCCcCCCCCHHHHHHHHHHHH
Q 006505 122 TQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVA-------MARVGDDRVRGISGGERRRVSIGFD 194 (643)
Q Consensus 122 ~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~-------~~~vg~~~~~~LSGGerqRv~ia~a 194 (643)
+|.+.++.. ||||||.|+..+ .+++.+++++...|++.. .|.|| ++.-.||||||||+++|||
T Consensus 588 ~Q~pWI~ng-TvreNILFG~~~--------d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIG-ErGinLSGGQKqRIsLARA 657 (1381)
T KOG0054|consen 588 PQQPWIQNG-TVRENILFGSPY--------DEERYDKVIKACALKKDLEILPFGDLTEIG-ERGINLSGGQKQRISLARA 657 (1381)
T ss_pred ccccHhhCC-cHHHhhhcCccc--------cHHHHHHHHHHccCHhHHhhcCCCCcceec-CCccCCcHhHHHHHHHHHH
Confidence 999999987 999999997543 246777888888776544 34444 4566899999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 195 VIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 195 L~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
+-++++|++||.|.|++|++...++.+..-+-.- +++|+|++|||.. ..+.+|.|++|++|++...|+.+|+.
T Consensus 658 VY~~adIYLLDDplSAVDahvg~~if~~ci~~~L-~~KT~ILVTHql~--~L~~ad~Iivl~~G~I~~~Gty~el~ 730 (1381)
T KOG0054|consen 658 VYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLL-RGKTVILVTHQLQ--FLPHADQIIVLKDGKIVESGTYEELL 730 (1381)
T ss_pred HhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhh-cCCEEEEEeCchh--hhhhCCEEEEecCCeEecccCHHHHH
Confidence 9999999999999999999999999866554333 4899999999974 67899999999999999999999987
|
|
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-30 Score=266.11 Aligned_cols=194 Identities=26% Similarity=0.377 Sum_probs=154.6
Q ss_pred cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHh-----c---CC--CCC-----------ccEEEECCCcCCc-----
Q 006505 58 RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILA-----G---KL--TPQ-----------SGSTFVNGSPIDK----- 111 (643)
Q Consensus 58 ~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~-----g---~~--~~~-----------~G~I~~~g~~~~~----- 111 (643)
..-|+|||..|+.|++++|.|+||||||||++.+. . .. .|. +--|.++..|+..
T Consensus 8 ~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~ 87 (261)
T cd03271 8 ENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSN 87 (261)
T ss_pred hhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCc
Confidence 45689999999999999999999999999998552 1 10 121 1247788777632
Q ss_pred --------hhhcc----------------cEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChh
Q 006505 112 --------AQFRK----------------VSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEH 167 (643)
Q Consensus 112 --------~~~~~----------------~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~ 167 (643)
..+|+ .+.|..++...+..+||.|++.|...+. ..+++.++++.+||..
T Consensus 88 ~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~-------~~~~~~~~L~~vgL~~ 160 (261)
T cd03271 88 PATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP-------KIARKLQTLCDVGLGY 160 (261)
T ss_pred HHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh-------hHHHHHHHHHHcCCch
Confidence 11111 1346666666678899999999876542 1245778999999976
Q ss_pred -hhhhhcCCCcCCCCCHHHHHHHHHHHHHhcC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCch
Q 006505 168 -VAMARVGDDRVRGISGGERRRVSIGFDVIHD---PKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGF 243 (643)
Q Consensus 168 -~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~---p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~ 243 (643)
.. ++.+.+||||||||++||++|+.+ |++++|||||+|||+.....+.+.|++++++ |.|||+++|+++.
T Consensus 161 l~l-----~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~-g~tvIiitH~~~~ 234 (261)
T cd03271 161 IKL-----GQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDK-GNTVVVIEHNLDV 234 (261)
T ss_pred hhh-----cCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHH
Confidence 34 456789999999999999999996 7999999999999999999999999999864 9999999999963
Q ss_pred HHHhhcCEEEEE------eCCeEEEecCh
Q 006505 244 RIVKMFNSILML------ANGSVLHHGTV 266 (643)
Q Consensus 244 ~i~~~~D~v~~L------~~G~iv~~G~~ 266 (643)
+ +.+|+++.| ++|++++.|++
T Consensus 235 -i-~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 235 -I-KCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred -H-HhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 4 679999999 89999999974
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.2e-31 Score=243.79 Aligned_cols=204 Identities=26% Similarity=0.381 Sum_probs=167.1
Q ss_pred hccccccccc-------ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCc--CC-----c-
Q 006505 47 KLEEAADSDG-------VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSP--ID-----K- 111 (643)
Q Consensus 47 ~~~~~~~~~~-------~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~--~~-----~- 111 (643)
.+++++|.+. .-++++|+||+++.||++++=||||||||||||+|-|-+.|++|+|.+.-.. ++ +
T Consensus 6 ~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr 85 (235)
T COG4778 6 NVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPR 85 (235)
T ss_pred eeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChH
Confidence 4555555552 2369999999999999999999999999999999999999999999986432 11 1
Q ss_pred --hh-hcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHH
Q 006505 112 --AQ-FRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRR 188 (643)
Q Consensus 112 --~~-~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqR 188 (643)
-+ .|+.+|||.|--...|..+..|-.+-.+.- .+.+.+..++++..++.+|++.+..- .-.+.+.|||||||
T Consensus 86 ~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~-~gv~~~~a~~~a~~Ll~rLnlperLW----~LaPaTFSGGEqQR 160 (235)
T COG4778 86 EVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLA-RGVPREVARAKAADLLTRLNLPERLW----SLAPATFSGGEQQR 160 (235)
T ss_pred HHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHH-cCCCHHHHHHHHHHHHHHcCCCHHHh----cCCCcccCCchhee
Confidence 12 346689999987778877777776655433 35577778889999999999976442 33678999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeC
Q 006505 189 VSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLAN 257 (643)
Q Consensus 189 v~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 257 (643)
|.|||.++.+-+||+|||||+.||..++..++++|++-+. .|..+|=+-||-+. -...+||++-+..
T Consensus 161 VNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka-~GaAlvGIFHDeev-re~vadR~~~~~~ 227 (235)
T COG4778 161 VNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKA-RGAALVGIFHDEEV-REAVADRLLDVSA 227 (235)
T ss_pred hhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHh-cCceEEEeeccHHH-HHHHhhheeeccc
Confidence 9999999999999999999999999999999999998765 59999999999642 3457999988753
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=275.76 Aligned_cols=213 Identities=23% Similarity=0.433 Sum_probs=180.0
Q ss_pred hhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc----hhhcccEEE
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK----AQFRKVSGY 120 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~----~~~~~~i~y 120 (643)
..++++++... .++|+||++++||+++|-|-=|||+|-|+++|.|..++.+|+|.+||+++.. ...+..++|
T Consensus 263 ~l~v~~l~~~~----~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~ 338 (500)
T COG1129 263 VLEVRNLSGGG----KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAY 338 (500)
T ss_pred EEEEecCCCCC----ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEe
Confidence 34455554322 5799999999999999999999999999999999988999999999998743 356778999
Q ss_pred EccC---CCCCCCCCHHHHHHHHHHhcC----CCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHH
Q 006505 121 VTQR---DTLFPLLTVEETLMFSAKLRL----RLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGF 193 (643)
Q Consensus 121 v~Q~---~~l~~~lTv~E~l~~~~~~~~----~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~ 193 (643)
||.| +.++..++|+||+.++...+. ..+.+..++.+++..+.|++.... . +..+..||||.||||.||+
T Consensus 339 v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s-~---~~~v~~LSGGNQQKVvlar 414 (500)
T COG1129 339 VPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPS-P---EQPIGTLSGGNQQKVVLAR 414 (500)
T ss_pred CCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCC-c---cchhhcCCchhhhhHHHHH
Confidence 9988 468999999999998832221 124455566789999999985321 1 4577899999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChh
Q 006505 194 DVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVD 267 (643)
Q Consensus 194 aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 267 (643)
.|..+|++|||||||.|.|.-++.+|.++++++|++ |++||++|.++. |+..+||||+||++|+++..=+.+
T Consensus 415 wL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~-G~ail~iSSElp-Ell~~~DRIlVm~~Gri~~e~~~~ 486 (500)
T COG1129 415 WLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAE-GKAILMISSELP-ELLGLSDRILVMREGRIVGELDRE 486 (500)
T ss_pred HHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHC-CCEEEEEeCChH-HHHhhCCEEEEEECCEEEEEeccc
Confidence 999999999999999999999999999999999986 999999999997 799999999999999998754444
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-29 Score=280.85 Aligned_cols=206 Identities=29% Similarity=0.387 Sum_probs=172.2
Q ss_pred hhhhhhhcccccccccc-cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEE
Q 006505 41 AQEELSKLEEAADSDGV-RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSG 119 (643)
Q Consensus 41 ~~~~~~~~~~~~~~~~~-~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~ 119 (643)
...+++.++++++.|++ +.+++++||.+.+|+.+||+||||+|||||||+|+|...|.+|+|.+.-. -.+|
T Consensus 317 ~g~~vl~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~--------v~ig 388 (530)
T COG0488 317 LGKLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET--------VKIG 388 (530)
T ss_pred CCCeeEEEeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc--------eEEE
Confidence 34567889999999966 69999999999999999999999999999999999999999999987521 3489
Q ss_pred EEccCC-CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcC
Q 006505 120 YVTQRD-TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHD 198 (643)
Q Consensus 120 yv~Q~~-~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~ 198 (643)
|..|+. .+.+..|+.|++.-.. + +..+..+...|..+++....- .++++.||||||.|+.+|+.++.+
T Consensus 389 yf~Q~~~~l~~~~t~~d~l~~~~----~---~~~e~~~r~~L~~f~F~~~~~----~~~v~~LSGGEk~Rl~La~ll~~~ 457 (530)
T COG0488 389 YFDQHRDELDPDKTVLEELSEGF----P---DGDEQEVRAYLGRFGFTGEDQ----EKPVGVLSGGEKARLLLAKLLLQP 457 (530)
T ss_pred EEEehhhhcCccCcHHHHHHhhC----c---cccHHHHHHHHHHcCCChHHH----hCchhhcCHhHHHHHHHHHHhccC
Confidence 999985 5568889999886432 1 111567889999999974321 346789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEe-cChhHHHH
Q 006505 199 PKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHH-GTVDLLSV 271 (643)
Q Consensus 199 p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~-G~~~~~~~ 271 (643)
|.+|+|||||+.||..+...+.+.|.+. .-|||++|||... +-+++++++.+.+ ++..+ |..++-.+
T Consensus 458 pNvLiLDEPTNhLDi~s~~aLe~aL~~f----~Gtvl~VSHDr~F-l~~va~~i~~~~~-~~~~~~g~y~~y~~ 525 (530)
T COG0488 458 PNLLLLDEPTNHLDIESLEALEEALLDF----EGTVLLVSHDRYF-LDRVATRIWLVED-KVEEFEGGYEDYLE 525 (530)
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHhC----CCeEEEEeCCHHH-HHhhcceEEEEcC-ceeEcCCCHHHHHH
Confidence 9999999999999999999999999875 4599999999985 8899999999998 55444 76655443
|
|
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.6e-30 Score=252.11 Aligned_cols=164 Identities=20% Similarity=0.287 Sum_probs=132.9
Q ss_pred eceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCC---------ccEEEECCCcCCchhhcccEEEEccCCCCCCCCC
Q 006505 62 DGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQ---------SGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLT 132 (643)
Q Consensus 62 ~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~---------~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lT 132 (643)
+++++++++| +++|+||||||||||+++|+|+..+. .|++.++|++......++.++||+|++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 6789999999 99999999999999999999997554 357888887764433457899999998765
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCC
Q 006505 133 VEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVI----HDPKVLILDEPT 208 (643)
Q Consensus 133 v~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~----~~p~illlDEPt 208 (643)
|.. . . .++++++++. .+.. +..+..||||||||++||++++ .+|++++|||||
T Consensus 89 ------~~~--~---~----~~~~~~~l~~---~~~~-----~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~ 145 (197)
T cd03278 89 ------YSI--I---S----QGDVSEIIEA---PGKK-----VQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVD 145 (197)
T ss_pred ------eeE--E---e----hhhHHHHHhC---CCcc-----ccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCc
Confidence 110 0 1 2356666666 2223 4467899999999999999997 467999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeC
Q 006505 209 SGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLAN 257 (643)
Q Consensus 209 sgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 257 (643)
+|||+.++..+.+.|+++++ +.|||++||+++ ..+.+|+++.+..
T Consensus 146 ~~LD~~~~~~l~~~l~~~~~--~~tiIiitH~~~--~~~~~d~v~~~~~ 190 (197)
T cd03278 146 AALDDANVERFARLLKEFSK--ETQFIVITHRKG--TMEAADRLYGVTM 190 (197)
T ss_pred ccCCHHHHHHHHHHHHHhcc--CCEEEEEECCHH--HHhhcceEEEEEe
Confidence 99999999999999999864 689999999986 3578999999974
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-29 Score=255.26 Aligned_cols=187 Identities=18% Similarity=0.301 Sum_probs=138.9
Q ss_pred ccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHh----------------cCCCCCcc--------EEEECCCc
Q 006505 53 DSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILA----------------GKLTPQSG--------STFVNGSP 108 (643)
Q Consensus 53 ~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~----------------g~~~~~~G--------~I~~~g~~ 108 (643)
++|+++.++++++ |++++|+||||||||||+++|+ ++..+++| +|.+++.+
T Consensus 10 ksy~~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~ 84 (243)
T cd03272 10 KSYKDQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSD 84 (243)
T ss_pred cCcccCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCC
Confidence 4677888888887 7899999999999999999998 44455566 77776632
Q ss_pred C----C--chhhcccEEEEccCCCCCC-CCCHHHHHHHHHHhcCCCCHH---HHHHHHHHHHHHcCChhhhhhhcCCCcC
Q 006505 109 I----D--KAQFRKVSGYVTQRDTLFP-LLTVEETLMFSAKLRLRLPQA---QLRARVKSLVKELGLEHVAMARVGDDRV 178 (643)
Q Consensus 109 ~----~--~~~~~~~i~yv~Q~~~l~~-~lTv~E~l~~~~~~~~~~~~~---~~~~~v~~~l~~lgl~~~~~~~vg~~~~ 178 (643)
. . +...++.++|++|+..+++ ..|..|...+...+....... ....++.++ +++.+.. +..+
T Consensus 85 ~~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~l---~~l~~~~-----~~~~ 156 (243)
T cd03272 85 NRFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKINSL---TNMKQDE-----QQEM 156 (243)
T ss_pred CccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHHh---hhccccc-----cccc
Confidence 1 1 1245677899999887777 467777665554432211000 001123333 3443333 4467
Q ss_pred CCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEE
Q 006505 179 RGISGGERRRVSIGFDVIH----DPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILM 254 (643)
Q Consensus 179 ~~LSGGerqRv~ia~aL~~----~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~ 254 (643)
+.||||||||++||++|+. +|+++++||||+|||+.++..+.+.|+++++ ++|||+++|++ ++.+++|++++
T Consensus 157 ~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~--~~~ii~~~h~~--~~~~~~d~i~~ 232 (243)
T cd03272 157 QQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD--GAQFITTTFRP--ELLEVADKFYG 232 (243)
T ss_pred cccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC--CCEEEEEecCH--HHHhhCCEEEE
Confidence 8999999999999999973 5899999999999999999999999999864 78999999996 47799999999
Q ss_pred Ee
Q 006505 255 LA 256 (643)
Q Consensus 255 L~ 256 (643)
|.
T Consensus 233 l~ 234 (243)
T cd03272 233 VK 234 (243)
T ss_pred EE
Confidence 96
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.5e-30 Score=237.24 Aligned_cols=197 Identities=27% Similarity=0.447 Sum_probs=169.4
Q ss_pred eeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEEEEccCCCCCCCCCHHHH
Q 006505 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGYVTQRDTLFPLLTVEET 136 (643)
Q Consensus 60 iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~E~ 136 (643)
-|-.+|+.+..||+.-++|||||||||||-.++|+. |.+|+|.++|.++.. .+..++-+|..|+..-...+.|...
T Consensus 14 RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~Y 92 (248)
T COG4138 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHY 92 (248)
T ss_pred cccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhh
Confidence 367899999999999999999999999999999996 579999999999854 3555667899988665555788888
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhc-----CC--CEEEEeCCCC
Q 006505 137 LMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIH-----DP--KVLILDEPTS 209 (643)
Q Consensus 137 l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~-----~p--~illlDEPts 209 (643)
+.+. . +.++....++++.+.++|++.. .+.+..|||||-|||-+|...+. || ++|+||||.+
T Consensus 93 L~L~----q--P~~~~a~~i~~i~~~L~l~DKL-----~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~ 161 (248)
T COG4138 93 LTLH----Q--PDKTRTELLNDVAGALALDDKL-----GRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMN 161 (248)
T ss_pred hhhc----C--chHHHHHHHHHHHhhhcccchh-----hhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCc
Confidence 7642 2 4466667789999999998766 34667999999999999987664 44 6899999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 210 GLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 210 gLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
+||...+..+-.+|.+++++ |.+||++.||.+. ..+.+|++.+|+.|++...|..+|+.
T Consensus 162 ~LDvAQ~~aLdrll~~~c~~-G~~vims~HDLNh-TLrhA~~~wLL~rG~l~~~G~~~eVl 220 (248)
T COG4138 162 SLDVAQQSALDRLLSALCQQ-GLAIVMSSHDLNH-TLRHAHRAWLLKRGKLLASGRREEVL 220 (248)
T ss_pred chhHHHHHHHHHHHHHHHhC-CcEEEEeccchhh-HHHHHHHHHHHhcCeEEeecchhhhc
Confidence 99999999999999999985 9999999999985 78999999999999999999998874
|
|
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.2e-28 Score=248.77 Aligned_cols=182 Identities=19% Similarity=0.241 Sum_probs=140.0
Q ss_pred CeEEEEECCCCCCHHHHHHHHhcCCCCC-ccEEEECCC-cCCc-----hhhcccEEEEccCC---------CCCCCCCHH
Q 006505 71 WEILAIVGPSGAGKSSLLEILAGKLTPQ-SGSTFVNGS-PIDK-----AQFRKVSGYVTQRD---------TLFPLLTVE 134 (643)
Q Consensus 71 Ge~~aIlG~nGaGKSTLL~~l~g~~~~~-~G~I~~~g~-~~~~-----~~~~~~i~yv~Q~~---------~l~~~lTv~ 134 (643)
..+++|+||||||||||+++|++++.+. .|++...|. ++-. ...+..+++++|++ .+.|.+||.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 4599999999999999999999999876 568888776 3211 11234789999985 345678999
Q ss_pred HHHHHHHHhcCCC-CHHHHHHHHHHHHHHcCChhhhhh---------------hcCCCcCCCCCHHHHHHHHHHHHHh--
Q 006505 135 ETLMFSAKLRLRL-PQAQLRARVKSLVKELGLEHVAMA---------------RVGDDRVRGISGGERRRVSIGFDVI-- 196 (643)
Q Consensus 135 E~l~~~~~~~~~~-~~~~~~~~v~~~l~~lgl~~~~~~---------------~vg~~~~~~LSGGerqRv~ia~aL~-- 196 (643)
+++......+... .++...+++.++|+.+|+...... ...+.++.+||||||||++||++|+
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~ 184 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALL 184 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHh
Confidence 8886543211100 122334688899999998611000 1124578899999999999999998
Q ss_pred --cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEe
Q 006505 197 --HDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLA 256 (643)
Q Consensus 197 --~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 256 (643)
.+|+++++||||+|||+.++..+.+.|++++ + |.|||++||++ ++.+.+|+++-+.
T Consensus 185 ~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~-g~~ii~iSH~~--~~~~~~d~v~~~~ 242 (251)
T cd03273 185 LFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-K-GSQFIVVSLKE--GMFNNANVLFRTR 242 (251)
T ss_pred hccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-C-CCEEEEEECCH--HHHHhCCEEEEEE
Confidence 5789999999999999999999999999985 3 89999999995 5788999998875
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.5e-29 Score=249.34 Aligned_cols=184 Identities=17% Similarity=0.209 Sum_probs=140.0
Q ss_pred cccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEccCCCC
Q 006505 48 LEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTL 127 (643)
Q Consensus 48 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l 127 (643)
++|. +.|+.+.+++++++ ++++|+||||||||||+++|. .++|.+.. ...++.+++++|+..+
T Consensus 8 l~nf-k~~~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~----------~~~G~~~~-~~~~~~i~~~~~~~~~ 70 (212)
T cd03274 8 LENF-KSYAGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSML----------FVFGFRAS-KMRQKKLSDLIHNSAG 70 (212)
T ss_pred EECc-ccCCCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHH----------HHhccCHH-HhhhhhHHHHhcCCCC
Confidence 3443 37888899999987 899999999999999999997 23454431 1112568999999988
Q ss_pred CCCCCHHHHHHHHHHhcC-------CCCHHHHHH--HHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhc-
Q 006505 128 FPLLTVEETLMFSAKLRL-------RLPQAQLRA--RVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIH- 197 (643)
Q Consensus 128 ~~~lTv~E~l~~~~~~~~-------~~~~~~~~~--~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~- 197 (643)
++.+|++|.+.+...... +...+.... ..+++++.+++.+..++ .++.+|+|||||++||++++.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~-----~~~~lS~G~~~r~~la~al~~~ 145 (212)
T cd03274 71 HPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWK-----NISNLSGGEKTLSSLALVFALH 145 (212)
T ss_pred CCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeecccccccc-----chhhcCHHHHHHHHHHHHHHhc
Confidence 999999998766543210 111110000 12556667777665533 567999999999999999974
Q ss_pred ---CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeC
Q 006505 198 ---DPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLAN 257 (643)
Q Consensus 198 ---~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 257 (643)
+|+++++||||+|||+.++..+.+.|+++++ +.|+|++||++ ++.++||++++|..
T Consensus 146 ~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~--~~~~iivs~~~--~~~~~~d~v~~~~~ 204 (212)
T cd03274 146 HYKPTPLYVMDEIDAALDFRNVSIVANYIKERTK--NAQFIVISLRN--NMFELADRLVGIYK 204 (212)
T ss_pred ccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcC--CCEEEEEECcH--HHHHhCCEEEEEEe
Confidence 5799999999999999999999999999863 67888999996 57899999999974
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-27 Score=235.67 Aligned_cols=167 Identities=22% Similarity=0.303 Sum_probs=130.8
Q ss_pred ceEEEEecCeEEEEECCCCCCHHHHHHHHh----cCCCCCccEEEECCCcCCchhhcccEEEEccCC-----CCCCCCCH
Q 006505 63 GVSCKAKPWEILAIVGPSGAGKSSLLEILA----GKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRD-----TLFPLLTV 133 (643)
Q Consensus 63 ~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~----g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~-----~l~~~lTv 133 (643)
..++++.+| +++|+|||||||||||++|. |...|+.|.+..+...+.....+..+++++|++ .....+|+
T Consensus 15 ~~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~ 93 (204)
T cd03240 15 RSEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAI 93 (204)
T ss_pred ceEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhH
Confidence 345667788 99999999999999999995 998888877763222333334456789999987 34455688
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHH------HHHHHHHhcCCCEEEEeCC
Q 006505 134 EETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRR------VSIGFDVIHDPKVLILDEP 207 (643)
Q Consensus 134 ~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqR------v~ia~aL~~~p~illlDEP 207 (643)
.|++.+. ++. .+++.+ ++.++.||+||||| ++||++++.+|+++++|||
T Consensus 94 ~~~~~~~-------~~~----~~~~~~--------------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP 148 (204)
T cd03240 94 LENVIFC-------HQG----ESNWPL--------------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEP 148 (204)
T ss_pred hhceeee-------chH----HHHHHH--------------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCC
Confidence 8888542 111 222222 33568999999996 7899999999999999999
Q ss_pred CCCCCHHHHH-HHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeC
Q 006505 208 TSGLDSTSAL-QIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLAN 257 (643)
Q Consensus 208 tsgLD~~~~~-~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 257 (643)
|++||+.++. .+.+.|++++++.|.|||++||+++ ..+.+|+++.|.+
T Consensus 149 ~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~--~~~~~d~i~~l~~ 197 (204)
T cd03240 149 TTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEE--LVDAADHIYRVEK 197 (204)
T ss_pred ccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHH--HHhhCCEEEEEee
Confidence 9999999999 9999999997644889999999975 4578999999964
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-26 Score=246.95 Aligned_cols=221 Identities=24% Similarity=0.387 Sum_probs=190.3
Q ss_pred hhhhhcccccccccc-cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcC----Cch-hhcc
Q 006505 43 EELSKLEEAADSDGV-RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI----DKA-QFRK 116 (643)
Q Consensus 43 ~~~~~~~~~~~~~~~-~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~----~~~-~~~~ 116 (643)
.+++++++++.+... .+.+++|||++++||+++|.|-.|-|-+.|+.+|+|+.++.+|+|.++|+++ +.. ..+.
T Consensus 255 ~~vL~V~~L~v~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~ 334 (501)
T COG3845 255 EVVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRL 334 (501)
T ss_pred CeEEEEeeeEeecCCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhc
Confidence 457788998766654 5789999999999999999999999999999999999988889999999996 233 3345
Q ss_pred cEEEEccCC---CCCCCCCHHHHHHHHHHhc-----CC-CCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHH
Q 006505 117 VSGYVTQRD---TLFPLLTVEETLMFSAKLR-----LR-LPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERR 187 (643)
Q Consensus 117 ~i~yv~Q~~---~l~~~lTv~E~l~~~~~~~-----~~-~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerq 187 (643)
.++|||+|. .+.+.+|+.||+.+...-+ .+ ...+..++.+.++++++++.... . ..+.+.||||++|
T Consensus 335 G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~-~---~~~a~~LSGGNqQ 410 (501)
T COG3845 335 GLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPS-P---DAPARSLSGGNQQ 410 (501)
T ss_pred CCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCC-C---CcchhhcCCccee
Confidence 689999985 5788999999998865432 11 14566778899999999986322 1 3467899999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChh
Q 006505 188 RVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVD 267 (643)
Q Consensus 188 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 267 (643)
|+-+||+|..+|++|+..+||.|||..+...+.+.|.+.+++ |+.|++++-|++ |+++++|||.+|.+|+++...+++
T Consensus 411 K~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~-G~AVLLiS~dLD-Eil~lsDrIaVi~~Gri~~~~~~~ 488 (501)
T COG3845 411 KLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDA-GKAVLLISEDLD-EILELSDRIAVIYEGRIVGIVPPE 488 (501)
T ss_pred hhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhc-CCEEEEEehhHH-HHHHhhheeeeeeCCceecccccc
Confidence 999999999999999999999999999999999999999885 999999999997 799999999999999999888877
Q ss_pred HH
Q 006505 268 LL 269 (643)
Q Consensus 268 ~~ 269 (643)
++
T Consensus 489 ~~ 490 (501)
T COG3845 489 EA 490 (501)
T ss_pred cC
Confidence 63
|
|
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-26 Score=231.33 Aligned_cols=190 Identities=18% Similarity=0.180 Sum_probs=131.9
Q ss_pred hcccccccccccceeeceEEEEe-cCeEEEEECCCCCCHHHHHHHHhcCC-CCCccEEEECC--CcCCchhhcccEEEEc
Q 006505 47 KLEEAADSDGVRRVLDGVSCKAK-PWEILAIVGPSGAGKSSLLEILAGKL-TPQSGSTFVNG--SPIDKAQFRKVSGYVT 122 (643)
Q Consensus 47 ~~~~~~~~~~~~~iL~~vs~~i~-~Ge~~aIlG~nGaGKSTLL~~l~g~~-~~~~G~I~~~g--~~~~~~~~~~~i~yv~ 122 (643)
+++|.. +|... ++++|... +|++++|+|||||||||||++|++.+ .+..+....+. ..+.....+..+++++
T Consensus 7 ~l~nf~-~y~~~---~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~~f 82 (213)
T cd03279 7 ELKNFG-PFREE---QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSFTF 82 (213)
T ss_pred EEECCc-CcCCc---eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEEEEE
Confidence 345554 44433 56666644 58999999999999999999999643 33334333321 1112223455689999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhc-----
Q 006505 123 QRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIH----- 197 (643)
Q Consensus 123 Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~----- 197 (643)
|++.... ++.+.. ..+.++..+.+ .++..++.+.. ++.+..||||||||++||++|+.
T Consensus 83 ~~~~~~~--~~~r~~--------gl~~~~~~~~~--~l~~g~l~~~l-----~~~~~~lS~G~~~r~~la~al~~~p~~~ 145 (213)
T cd03279 83 QLGGKKY--RVERSR--------GLDYDQFTRIV--LLPQGEFDRFL-----ARPVSTLSGGETFLASLSLALALSEVLQ 145 (213)
T ss_pred EECCeEE--EEEEec--------CCCHHHHHHhh--hhhhcchHHHh-----cCCccccCHHHHHHHHHHHHHHhHHHhh
Confidence 9863211 111111 12222222111 23333444444 45778999999999999999985
Q ss_pred -----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCe
Q 006505 198 -----DPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGS 259 (643)
Q Consensus 198 -----~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 259 (643)
+|++++|||||+|||+.+...+.+.|++++++ |.|||++||+++ .+...+|+++++++|.
T Consensus 146 ~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~-~~tii~itH~~~-~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 146 NRGGARLEALFIDEGFGTLDPEALEAVATALELIRTE-NRMVGVISHVEE-LKERIPQRLEVIKTPG 210 (213)
T ss_pred hccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEECchH-HHHhhCcEEEEEecCC
Confidence 57899999999999999999999999999764 899999999997 4778899999999875
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-27 Score=245.29 Aligned_cols=206 Identities=21% Similarity=0.316 Sum_probs=171.1
Q ss_pred hhhhccccccccccc-ceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEE
Q 006505 44 ELSKLEEAADSDGVR-RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSG 119 (643)
Q Consensus 44 ~~~~~~~~~~~~~~~-~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~ 119 (643)
+-++++|+...|... .-+..||++|++||++-|+|.||||||||++.|.|+++|++|+|++||+|++. +++|+..+
T Consensus 321 ~~lelrnvrfay~~~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfS 400 (546)
T COG4615 321 KTLELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFS 400 (546)
T ss_pred cceeeeeeeeccCcccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHH
Confidence 446677777777554 56889999999999999999999999999999999999999999999999965 57888888
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCC
Q 006505 120 YVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDP 199 (643)
Q Consensus 120 yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p 199 (643)
-|+-|-.+|+.+=-.|+ +...+.++..|+++.+.+...-+-|+-..-.||.|||||+++-.||+-+.
T Consensus 401 avFsDyhLF~~ll~~e~-------------~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR 467 (546)
T COG4615 401 AVFSDYHLFDQLLGPEG-------------KASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEER 467 (546)
T ss_pred HHhhhHhhhHhhhCCcc-------------CCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhC
Confidence 88888888876322221 11235678888888887644322223345689999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEec
Q 006505 200 KVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHG 264 (643)
Q Consensus 200 ~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 264 (643)
+|+++||=-+.-||.-++.+.+.+--+-++.|+||+.+|||- .-+.++||++.+++|++++.-
T Consensus 468 ~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd--~YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 468 DILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDD--HYFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred CeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCc--hhhhhHHHHHHHhcCceeecc
Confidence 999999999999999999998887766666799999999995 468999999999999998764
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-25 Score=273.65 Aligned_cols=204 Identities=22% Similarity=0.383 Sum_probs=152.9
Q ss_pred ceeeceEEEEecCeEEEEECCCCCCHHHHHH---------HHhcCCCCCc----cE----EEECCCcCCc----------
Q 006505 59 RVLDGVSCKAKPWEILAIVGPSGAGKSSLLE---------ILAGKLTPQS----GS----TFVNGSPIDK---------- 111 (643)
Q Consensus 59 ~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~---------~l~g~~~~~~----G~----I~~~g~~~~~---------- 111 (643)
..|+|+|++|++||+++|.|+||||||||++ .|.|...+.. +. |.+|..++..
T Consensus 609 ~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~idQspigr~~rS~~atY~ 688 (1809)
T PRK00635 609 HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHITRDLPGRSQRSIPLTYI 688 (1809)
T ss_pred CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEecCCCCCCCCCCCceeeh
Confidence 4799999999999999999999999999999 5556432211 11 2333333211
Q ss_pred ---hhhc---------cc-----EEEEccC--------------------------------------CCCCCCCCHHHH
Q 006505 112 ---AQFR---------KV-----SGYVTQR--------------------------------------DTLFPLLTVEET 136 (643)
Q Consensus 112 ---~~~~---------~~-----i~yv~Q~--------------------------------------~~l~~~lTv~E~ 136 (643)
..+| +. ..|.++. ...+...||.|+
T Consensus 689 g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~~e~L~~~~~~~tI~ev 768 (1809)
T PRK00635 689 KAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRFLPQVLEVRYKGKNIADI 768 (1809)
T ss_pred hhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCcccCHHHHhhccCCCCHHHH
Confidence 0111 00 1122221 124667899999
Q ss_pred HHHHHHhcC--CCCHHHHHHHHHHHHHHcCChhh-hhhhcCCCcCCCCCHHHHHHHHHHHHHh---cCCCEEEEeCCCCC
Q 006505 137 LMFSAKLRL--RLPQAQLRARVKSLVKELGLEHV-AMARVGDDRVRGISGGERRRVSIGFDVI---HDPKVLILDEPTSG 210 (643)
Q Consensus 137 l~~~~~~~~--~~~~~~~~~~v~~~l~~lgl~~~-~~~~vg~~~~~~LSGGerqRv~ia~aL~---~~p~illlDEPtsg 210 (643)
|.++..-.. ....++..+++ ++++.+||.+. . ++.+.+||||||||++||++|+ .+|++++|||||+|
T Consensus 769 L~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l-----~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsG 842 (1809)
T PRK00635 769 LEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPL-----GRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTG 842 (1809)
T ss_pred HHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhh-----cCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCC
Confidence 988654221 11234455566 58899999764 4 4467899999999999999998 69999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEe------CCeEEEecChhHHHH
Q 006505 211 LDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLA------NGSVLHHGTVDLLSV 271 (643)
Q Consensus 211 LD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~------~G~iv~~G~~~~~~~ 271 (643)
||+.+...+++.|++++++ |.|||+++|+++ .+ +.+|++++|. +|+++..|+++++..
T Consensus 843 LD~~~~~~Ll~lL~~L~~~-G~TVIiIsHdl~-~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~~ 906 (1809)
T PRK00635 843 LHTHDIKALIYVLQSLTHQ-GHTVVIIEHNMH-VV-KVADYVLELGPEGGNLGGYLLASCSPEELIH 906 (1809)
T ss_pred CCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HH-HhCCEEEEEccCCCCCCCEEEEeCCHHHHHh
Confidence 9999999999999999875 999999999997 35 8999999996 789999999988753
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.5e-25 Score=260.28 Aligned_cols=125 Identities=29% Similarity=0.464 Sum_probs=107.3
Q ss_pred CCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChh-hhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCC---CEEEEeC
Q 006505 131 LTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEH-VAMARVGDDRVRGISGGERRRVSIGFDVIHDP---KVLILDE 206 (643)
Q Consensus 131 lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~-~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p---~illlDE 206 (643)
+||.|++.|...+. + ..+..+.++.+||.. .. ++.+.+||||||||+.||++|+.+| ++++|||
T Consensus 792 ltv~E~l~~f~~~~----~---i~~~l~~L~~vgL~~l~l-----~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDE 859 (943)
T PRK00349 792 MTVEEALEFFEAIP----K---IARKLQTLVDVGLGYIKL-----GQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDE 859 (943)
T ss_pred CcHHHHHHHHHhch----h---hhHHHHHHHHCCCCcccc-----cCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEEC
Confidence 78999998875532 1 123467899999975 23 4467899999999999999999999 9999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEE------eCCeEEEecChhHHH
Q 006505 207 PTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILML------ANGSVLHHGTVDLLS 270 (643)
Q Consensus 207 PtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~ 270 (643)
||+|||+.+...+++.|+++.++ |.|||+++|+++. + +.+|+|+.| ++|++++.|+++++.
T Consensus 860 PtsGLD~~~~~~L~~~L~~l~~~-G~TVIiitH~~~~-i-~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~ 926 (943)
T PRK00349 860 PTTGLHFEDIRKLLEVLHRLVDK-GNTVVVIEHNLDV-I-KTADWIIDLGPEGGDGGGEIVATGTPEEVA 926 (943)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCHHH-H-HhCCEEEEecCCcCCCCCEEEEeCCHHHHH
Confidence 99999999999999999999864 9999999999963 4 689999999 789999999998875
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4e-25 Score=244.83 Aligned_cols=195 Identities=29% Similarity=0.337 Sum_probs=160.3
Q ss_pred hhhhccccccccc-ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEc
Q 006505 44 ELSKLEEAADSDG-VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVT 122 (643)
Q Consensus 44 ~~~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~ 122 (643)
..++++|++...+ ++..|++.++.+++||-+.|.||||||||||+|+|+|+.+-.+|+|..- -...+-|+|
T Consensus 391 ~~i~~~nl~l~~p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P--------~~~~~lflp 462 (604)
T COG4178 391 HGITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMP--------ADSALLFLP 462 (604)
T ss_pred ceeEEeeeeEECCCCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecC--------CCCceEEec
Confidence 4567888866543 4689999999999999999999999999999999999999989988552 123478999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcC-CCcCCCCCHHHHHHHHHHHHHhcCCCE
Q 006505 123 QRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVG-DDRVRGISGGERRRVSIGFDVIHDPKV 201 (643)
Q Consensus 123 Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg-~~~~~~LSGGerqRv~ia~aL~~~p~i 201 (643)
|.|.+... |.+|-+.++.... +-.++.+.++|.++||.+..++.-. ++--+.||+|||||+++||.|+++|++
T Consensus 463 Q~PY~p~G-tLre~l~YP~~~~-----~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~ 536 (604)
T COG4178 463 QRPYLPQG-TLREALCYPNAAP-----DFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKW 536 (604)
T ss_pred CCCCCCCc-cHHHHHhCCCCCC-----CCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCE
Confidence 99998888 9999998754321 1234568899999999987755322 224568999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEe
Q 006505 202 LILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLA 256 (643)
Q Consensus 202 lllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 256 (643)
++|||.|++||+.+...+.+++++-. .+.|||.+.|.+. +..+.++.+-+.
T Consensus 537 v~LDEATsALDe~~e~~l~q~l~~~l--p~~tvISV~Hr~t--l~~~h~~~l~l~ 587 (604)
T COG4178 537 VFLDEATSALDEETEDRLYQLLKEEL--PDATVISVGHRPT--LWNFHSRQLELL 587 (604)
T ss_pred EEEecchhccChHHHHHHHHHHHhhC--CCCEEEEeccchh--hHHHHhhheeec
Confidence 99999999999999999999998854 4899999999985 567777765554
|
|
| >COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.5e-25 Score=212.79 Aligned_cols=214 Identities=21% Similarity=0.283 Sum_probs=172.2
Q ss_pred ccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCC----ccEEEECCCcC---Cchhhc----ccEEEEcc
Q 006505 55 DGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQ----SGSTFVNGSPI---DKAQFR----KVSGYVTQ 123 (643)
Q Consensus 55 ~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~----~G~I~~~g~~~---~~~~~~----~~i~yv~Q 123 (643)
.|...++++||+++.+||+-+++|.||||||-..|+|+|..+.. .-...+++.++ ++++.| +.+++++|
T Consensus 17 qG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQ 96 (330)
T COG4170 17 QGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQ 96 (330)
T ss_pred CCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhc
Confidence 46667999999999999999999999999999999999997643 44556676654 223333 45689999
Q ss_pred CCC--CCCCCCHHHHHHHHHHh--cCCC---CHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHh
Q 006505 124 RDT--LFPLLTVEETLMFSAKL--RLRL---PQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVI 196 (643)
Q Consensus 124 ~~~--l~~~lTv~E~l~~~~~~--~~~~---~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~ 196 (643)
++. +-|.-+|...|.-..-. ..+. .-.-+++++-++|.++|+.+..|-. ..++.+|--||-|+|.||.|++
T Consensus 97 eP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM--~SYP~ElTeGE~QKVMIA~A~A 174 (330)
T COG4170 97 EPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIM--RSYPYELTEGECQKVMIAIALA 174 (330)
T ss_pred CchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHH--HhCcchhccCcceeeeeehhhc
Confidence 974 56655665544322110 0010 0112356788999999998766543 5689999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 197 HDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 197 ~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
.+|++|+.||||+.+|+.++.++.++|.++.+..|.||++++||.. .+-++||++-||.-|+-++.++.+++.+
T Consensus 175 nqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~-~is~W~d~i~VlYCGQ~~ESa~~e~l~~ 248 (330)
T COG4170 175 NQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQ-MISQWADKINVLYCGQTVESAPSEELVT 248 (330)
T ss_pred cCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHH-HHHHHhhheEEEEecccccccchhHHhc
Confidence 9999999999999999999999999999999888999999999997 4999999999999999999999888764
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.9e-24 Score=224.84 Aligned_cols=185 Identities=24% Similarity=0.327 Sum_probs=148.2
Q ss_pred ccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEccCCCCC
Q 006505 49 EEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLF 128 (643)
Q Consensus 49 ~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~ 128 (643)
.++.+.++. .-|+-=.+++..||+++++||||-||||+.++|+|.++|++|+ ..+ -.++|=||--.--
T Consensus 346 ~~~~k~~g~-F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~-------~~vSyKPQyI~~~ 413 (591)
T COG1245 346 PDLKKTYGD-FKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EED-------LKVSYKPQYISPD 413 (591)
T ss_pred chheeecCc-eEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Ccc-------ceEeecceeecCC
Confidence 445556653 3455556777888999999999999999999999999999987 111 2378888864333
Q ss_pred CCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q 006505 129 PLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPT 208 (643)
Q Consensus 129 ~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPt 208 (643)
...||++-+.-...-... ......++++-|.|++..++ .+.+|||||.|||+||.+|..++++++||||+
T Consensus 414 ~~gtV~~~l~~~~~~~~~-----~s~~~~ei~~pl~l~~i~e~-----~v~~LSGGELQRvaIaa~L~reADlYllDEPS 483 (591)
T COG1245 414 YDGTVEDLLRSAIRSAFG-----SSYFKTEIVKPLNLEDLLER-----PVDELSGGELQRVAIAAALSREADLYLLDEPS 483 (591)
T ss_pred CCCcHHHHHHHhhhhhcc-----cchhHHhhcCccchHHHHhc-----ccccCCchhHHHHHHHHHhccccCEEEecCch
Confidence 445999988654332111 11234578888999888844 66799999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEe
Q 006505 209 SGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLA 256 (643)
Q Consensus 209 sgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 256 (643)
+.||.+.+..+.+.+++.....++|.+++.||.-. +--++||+++.+
T Consensus 484 A~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~-~dyvsDr~ivF~ 530 (591)
T COG1245 484 AYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYM-IDYVSDRLIVFE 530 (591)
T ss_pred hhccHHHHHHHHHHHHHHHhhcCceEEEEecceeh-hhhhhceEEEEe
Confidence 99999999999999999999889999999999864 555789999885
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5e-25 Score=236.10 Aligned_cols=204 Identities=24% Similarity=0.326 Sum_probs=164.0
Q ss_pred hhhhhhccccccccccc-ceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEE
Q 006505 42 QEELSKLEEAADSDGVR-RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGY 120 (643)
Q Consensus 42 ~~~~~~~~~~~~~~~~~-~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~y 120 (643)
+.+.+.+.|+..+|..+ .++++++|-+.+++.+|++||||+|||||||++.|.+.|..|.|.-.-. ..+++
T Consensus 386 p~pvi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H--------~~~~~ 457 (614)
T KOG0927|consen 386 PPPVIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSH--------NKLPR 457 (614)
T ss_pred CCCeEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccc--------ccchh
Confidence 45677888998888766 6999999999999999999999999999999999999999998854322 22344
Q ss_pred EccC--CCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcC
Q 006505 121 VTQR--DTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHD 198 (643)
Q Consensus 121 v~Q~--~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~ 198 (643)
-.|+ +.+.-..++-|++.=.. +.+...+.+..++.++||....+ +.+++.||+|||+||..|+.++..
T Consensus 458 y~Qh~~e~ldl~~s~le~~~~~~------~~~~~~e~~r~ilgrfgLtgd~q----~~p~~~LS~Gqr~rVlFa~l~~kq 527 (614)
T KOG0927|consen 458 YNQHLAEQLDLDKSSLEFMMPKF------PDEKELEEMRSILGRFGLTGDAQ----VVPMSQLSDGQRRRVLFARLAVKQ 527 (614)
T ss_pred hhhhhHhhcCcchhHHHHHHHhc------cccchHHHHHHHHHHhCCCcccc----ccchhhcccccchhHHHHHHHhcC
Confidence 4554 34444567777765221 11234567889999999985432 347889999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeE-EEecChhH
Q 006505 199 PKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSV-LHHGTVDL 268 (643)
Q Consensus 199 p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i-v~~G~~~~ 268 (643)
|.+|+|||||+|||..+...+-+.|.+. .-+||++|||... +.++++++.+..+|.+ .+.|+...
T Consensus 528 P~lLlLDEPtnhLDi~tid~laeaiNe~----~Ggvv~vSHDfrl-I~qVaeEi~~c~~~~~~~~~G~i~~ 593 (614)
T KOG0927|consen 528 PHLLLLDEPTNHLDIETIDALAEAINEF----PGGVVLVSHDFRL-ISQVAEEIWVCENGTVTKWDGDIEI 593 (614)
T ss_pred CcEEEecCCCcCCCchhHHHHHHHHhcc----CCceeeeechhhH-HHHHHHHhHhhccCceeecCccHHH
Confidence 9999999999999999999999998765 4589999999985 8899999999988765 45565443
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-24 Score=233.17 Aligned_cols=214 Identities=22% Similarity=0.355 Sum_probs=150.0
Q ss_pred hhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccE--EEECCCcCCchh---h-----
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGS--TFVNGSPIDKAQ---F----- 114 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~--I~~~g~~~~~~~---~----- 114 (643)
-+++++++..+.++.+++|+++++.+|+-++|+|+|||||||+|++|+|...|..-+ ++.-.+++.+.. .
T Consensus 75 dvk~~sls~s~~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~~v~~ 154 (614)
T KOG0927|consen 75 DVKIESLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQAVVM 154 (614)
T ss_pred cceeeeeeeccCCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHHHHhh
Confidence 357889999999999999999999999999999999999999999999999886322 222223221110 0
Q ss_pred -----cccEEEEccCCCCC-CCCCHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCh-hhhhhhcCCCcCCCCCHHHH
Q 006505 115 -----RKVSGYVTQRDTLF-PLLTVEETLMFSAKLRL-RLPQAQLRARVKSLVKELGLE-HVAMARVGDDRVRGISGGER 186 (643)
Q Consensus 115 -----~~~i~yv~Q~~~l~-~~lTv~E~l~~~~~~~~-~~~~~~~~~~v~~~l~~lgl~-~~~~~~vg~~~~~~LSGGer 186 (643)
++++.|..++-... +. --.+.+.-. ..|. ....+..+.++.++|..+|.. +..+ +.+.++|||+|
T Consensus 155 ~~~~e~~rle~~~E~l~~~~d~-~~~~~l~~~-~~r~~~~d~~~~~~k~~~il~glgf~~~m~~-----k~~~~~SgGwr 227 (614)
T KOG0927|consen 155 ETDHERKRLEYLAEDLAQACDD-KEKDELDEL-YERLDEMDNDTFEAKAAKILHGLGFLSEMQD-----KKVKDLSGGWR 227 (614)
T ss_pred hhHHHHHHHHHHHHHHHhhccc-hhhhHHHHH-HHHHHhhCchhHHHHHHHHHHhcCCCHhHHH-----HHhhccCchHH
Confidence 11111111100000 00 000000000 0000 112233455666777777753 4443 36689999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCC-EEEEEecCCchHHHhhcCEEEEEeCCe-EEEec
Q 006505 187 RRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGR-TVILSIHQPGFRIVKMFNSILMLANGS-VLHHG 264 (643)
Q Consensus 187 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~-tvi~~~H~~~~~i~~~~D~v~~L~~G~-iv~~G 264 (643)
.|+++||+|..+|++|+|||||+|||..+..-+-+.|.+. .+ ++++++|.-+. +-.+|.+|+-|++++ +.|.|
T Consensus 228 mR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~----d~~~lVi~sh~QDf-ln~vCT~Ii~l~~kkl~~y~G 302 (614)
T KOG0927|consen 228 MRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKY----DRIILVIVSHSQDF-LNGVCTNIIHLDNKKLIYYEG 302 (614)
T ss_pred HHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhc----cCceEEEEecchhh-hhhHhhhhheecccceeeecC
Confidence 9999999999999999999999999999999999988775 33 89999999874 889999999999999 66778
Q ss_pred ChhHHH
Q 006505 265 TVDLLS 270 (643)
Q Consensus 265 ~~~~~~ 270 (643)
+.++..
T Consensus 303 nydqy~ 308 (614)
T KOG0927|consen 303 NYDQYV 308 (614)
T ss_pred CHHHHh
Confidence 877654
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-23 Score=247.13 Aligned_cols=125 Identities=26% Similarity=0.441 Sum_probs=103.7
Q ss_pred CCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhh-hhhhcCCCcCCCCCHHHHHHHHHHHHHhc---CCCEEEEe
Q 006505 130 LLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHV-AMARVGDDRVRGISGGERRRVSIGFDVIH---DPKVLILD 205 (643)
Q Consensus 130 ~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~-~~~~vg~~~~~~LSGGerqRv~ia~aL~~---~p~illlD 205 (643)
.+||.|.+.|...+.. ..+..++++.+||... . ++.+.+|||||+||+.||++|+. +|++++||
T Consensus 789 ~~tv~e~~~f~~~~~~-------i~~~l~~L~~~gL~~l~l-----~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILD 856 (924)
T TIGR00630 789 DMTVEEAYEFFEAVPS-------ISRKLQTLCDVGLGYIKL-----GQPATTLSGGEAQRIKLAKELSKRSTGRTLYILD 856 (924)
T ss_pred CCcHHHHHHHHHhccc-------hhHHHHHHHHcCCCchhh-----cCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEE
Confidence 3577777777654320 1234578889999642 3 45678999999999999999997 59999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEE------eCCeEEEecChhHH
Q 006505 206 EPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILML------ANGSVLHHGTVDLL 269 (643)
Q Consensus 206 EPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~ 269 (643)
|||+|||+.++..+.+.|+++.++ |.|||+++|+++. + +.+|++++| ++|++++.|+++++
T Consensus 857 EPtsgLD~~~~~~L~~~L~~l~~~-G~TVIvi~H~~~~-i-~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 857 EPTTGLHFDDIKKLLEVLQRLVDQ-GNTVVVIEHNLDV-I-KTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHH-H-HhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 999999999999999999999864 9999999999963 4 679999999 79999999998764
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.3e-24 Score=212.07 Aligned_cols=172 Identities=17% Similarity=0.180 Sum_probs=124.6
Q ss_pred eeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcC----CchhhcccEEEEccCCCCCCCCCHHH
Q 006505 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI----DKAQFRKVSGYVTQRDTLFPLLTVEE 135 (643)
Q Consensus 60 iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~----~~~~~~~~i~yv~Q~~~l~~~lTv~E 135 (643)
-++++++++.+| +.+|+|||||||||||.+|......... ...-|... ....-...+.+++|+..++++
T Consensus 11 ~~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~----- 83 (198)
T cd03276 11 CHRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKAS-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDAN----- 83 (198)
T ss_pred ceeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcc-cccccccHHHHhhCCCCeEEEEEEEEcCCccCC-----
Confidence 346788888888 8899999999999999999743322211 00112211 111123457788887665551
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHH----hcCCCEEEEeCCCCCC
Q 006505 136 TLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDV----IHDPKVLILDEPTSGL 211 (643)
Q Consensus 136 ~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL----~~~p~illlDEPtsgL 211 (643)
+ .....+++++++++. .+.. +++++.||+|||||++||+++ +.+|++++|||||+||
T Consensus 84 ----------~-~~~~~~~~~~~~l~~---~~~~-----~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~gl 144 (198)
T cd03276 84 ----------P-LCVLSQDMARSFLTS---NKAA-----VRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFM 144 (198)
T ss_pred ----------c-CCHHHHHHHHHHhcc---cccc-----CCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCccccc
Confidence 1 111123567777776 3333 457789999999999999999 5899999999999999
Q ss_pred CHHHHHHHHHHHHHHHHh--CCCEEEEEecCCchHHHhhcCEEEEEeCCe
Q 006505 212 DSTSALQIIDMLKVMAET--RGRTVILSIHQPGFRIVKMFNSILMLANGS 259 (643)
Q Consensus 212 D~~~~~~i~~~L~~l~~~--~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 259 (643)
|+.++..+.+.|++++++ .+.|||+++|+++ ++.++ |+|.+|..|+
T Consensus 145 D~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~-~i~~~-d~v~~~~~~~ 192 (198)
T cd03276 145 DMVNRKISTDLLVKEAKKQPGRQFIFITPQDIS-GLASS-DDVKVFRMKD 192 (198)
T ss_pred CHHHHHHHHHHHHHHHhcCCCcEEEEEECCccc-ccccc-cceeEEEecC
Confidence 999999999999998654 2468999999997 46655 9999998765
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.7e-24 Score=220.12 Aligned_cols=181 Identities=14% Similarity=0.169 Sum_probs=123.1
Q ss_pred ecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCc-C-Cc--------hhhcccEEEEccCCCC-CCCCCHHHHH
Q 006505 69 KPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSP-I-DK--------AQFRKVSGYVTQRDTL-FPLLTVEETL 137 (643)
Q Consensus 69 ~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~-~-~~--------~~~~~~i~yv~Q~~~l-~~~lTv~E~l 137 (643)
.++ +++|+|||||||||||++|++...+..|++..++.. . .. ....-.+.|..|++.. .-..++++..
T Consensus 21 ~~~-~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~ 99 (247)
T cd03275 21 FDR-FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGS 99 (247)
T ss_pred CCC-eEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCc
Confidence 344 999999999999999999999987777777654421 1 00 0112223444444321 1111222111
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhh---------hhcCC--------CcCCCCCHHHHHHHHHHHHHhcC--
Q 006505 138 MFSAKLRLRLPQAQLRARVKSLVKELGLEHVAM---------ARVGD--------DRVRGISGGERRRVSIGFDVIHD-- 198 (643)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~---------~~vg~--------~~~~~LSGGerqRv~ia~aL~~~-- 198 (643)
. ..+... +....+.++++++.+|+..... +.+.+ ..+..||||||||++||++++.+
T Consensus 100 ~---~~~ing-k~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~ 175 (247)
T cd03275 100 S---SYRING-KVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSY 175 (247)
T ss_pred e---EEEECC-EEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhcc
Confidence 0 001111 1112345678889899853211 11112 23489999999999999999875
Q ss_pred --CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeC
Q 006505 199 --PKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLAN 257 (643)
Q Consensus 199 --p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 257 (643)
|+++++||||+|||+.++..+.+.|++++++ |.+||++||++ ++.+.+|++++|..
T Consensus 176 ~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~-g~~vi~isH~~--~~~~~~d~i~~~~~ 233 (247)
T cd03275 176 QPAPFFVLDEVDAALDNTNVGKVASYIREQAGP-NFQFIVISLKE--EFFSKADALVGVYR 233 (247)
T ss_pred CCCCEEEEecccccCCHHHHHHHHHHHHHhccC-CcEEEEEECCH--HHHhhCCeEEEEEe
Confidence 8999999999999999999999999999864 89999999996 46789999999964
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.9e-25 Score=215.26 Aligned_cols=208 Identities=23% Similarity=0.379 Sum_probs=190.9
Q ss_pred HHHHHHHHHHHHHhhcChHHH-HHHHHHHHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHHHHHH-hHHHHHHHhh
Q 006505 365 KETIILTHRFSKNIFRTKELF-ACRTIQMLISGIVLGSIFHNVKDDLTGTEEKVGLFAFILTFLLSCTT-EALPIFLQER 442 (643)
Q Consensus 365 ~Q~~~l~~R~~~~~~Rd~~~~-~~r~~~~i~~~li~G~~f~~l~~~~~~~~~r~g~lf~~~~~~~~~~~-~~~~~f~~er 442 (643)
+|++.+++|+++..+|||.+. ..+++..+++++++|.+|.+++++.++. ++.|++++.+...++... +....+..||
T Consensus 1 ~q~~~l~~r~~~~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (210)
T PF01061_consen 1 RQIWALLRREFKRFWRNPFLGLIWSLIFPLLLLLIFGFIFGKLGNSQDGF-NRPGLIFGSIIFSFFSSISGSSISFERER 79 (210)
T ss_pred CHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHhccccccccc-ccceeeehhhHHhhhhhcccchhhhhhhc
Confidence 599999999999999999888 9999999999999999999998555555 778888887777764444 3447888999
Q ss_pred HHHHHHhCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 006505 443 EILMKETSCGSYRVSSYAIANGLVYLPFLLILAILFSVPLYWIVGLNPNLMAFFHFLLLIWLILYTANSVVVCFSALVPN 522 (643)
Q Consensus 443 ~v~~rE~~~~~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~~~~~l~~~~~~s~~~~i~~~~~~ 522 (643)
..+.||+.++.|++.+|.+|+.+.+++..++.++++.++.|++.|++.+ +|+.+++.+++..+++.++|.++++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~g~~~~~~~~~ 157 (210)
T PF01061_consen 80 GTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE--SFFLFLLILLLSILCSSGLGLLLAALFPS 157 (210)
T ss_pred cccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc--cchheecccccccccccccccccccchhh
Confidence 9999999999999999999999999999999999999999999999988 77888888888899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCccchhhhhhccChhHHHHHHHHHHhh
Q 006505 523 FIVGNSVISGVMGSFFLFSGYFISKHGIPDYWIFMHYISLFKYPFEQFLINEF 575 (643)
Q Consensus 523 ~~~a~~~~~~~~~~~~lfsGf~i~~~~ip~~~~Wl~yiSp~~y~~eal~~nef 575 (643)
...+..+.+++..+++++||.+.|.+.+|+|++|+.|+||++|++|++..++|
T Consensus 158 ~~~~~~~~~~~~~~~~~~sg~~~p~~~lP~~~~~i~~~~P~~~~~~~~r~~~f 210 (210)
T PF01061_consen 158 FRDASAISSLILLLLFFLSGVFFPLSSLPSWLRWISYLNPLTYAVEALRAALF 210 (210)
T ss_pred hhhhhhhhhhcccccccceeeecchHHChHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999886
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-22 Score=211.28 Aligned_cols=193 Identities=28% Similarity=0.397 Sum_probs=156.3
Q ss_pred hhhhhhhcccccccc-cccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEE
Q 006505 41 AQEELSKLEEAADSD-GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSG 119 (643)
Q Consensus 41 ~~~~~~~~~~~~~~~-~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~ 119 (643)
...|++-+.+++..| +.++++++++|-|.-...+||+||||.||||||++|.|-+.|..|+..-| .|-+||
T Consensus 582 L~PPvLGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKn--------hrL~iG 653 (807)
T KOG0066|consen 582 LNPPVLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKN--------HRLRIG 653 (807)
T ss_pred CCCCeeecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhcc--------ceeeee
Confidence 445677888999898 77889999999999999999999999999999999999999999987433 345689
Q ss_pred EEccCC--CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhc
Q 006505 120 YVTQRD--TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIH 197 (643)
Q Consensus 120 yv~Q~~--~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~ 197 (643)
+.-|.. .|-..-|.-|.|.-.. .+ +. +.+...|-.+||...++|. .+..||||||-||++|.--+.
T Consensus 654 ~FdQh~~E~L~~Eetp~EyLqr~F--Nl--py----q~ARK~LG~fGL~sHAHTi----kikdLSGGQKaRValaeLal~ 721 (807)
T KOG0066|consen 654 WFDQHANEALNGEETPVEYLQRKF--NL--PY----QEARKQLGTFGLASHAHTI----KIKDLSGGQKARVALAELALG 721 (807)
T ss_pred chhhhhHHhhccccCHHHHHHHhc--CC--Ch----HHHHHHhhhhhhhhccceE----eeeecCCcchHHHHHHHHhcC
Confidence 888863 4555667777775332 22 22 3455778899998777764 578999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCC
Q 006505 198 DPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANG 258 (643)
Q Consensus 198 ~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 258 (643)
.|++|||||||++||..+...+.+.|++. +-.||+++||-+. +.+.--.++|+.+.
T Consensus 722 ~PDvlILDEPTNNLDIESIDALaEAIney----~GgVi~VsHDeRL-i~eT~C~LwVvE~Q 777 (807)
T KOG0066|consen 722 GPDVLILDEPTNNLDIESIDALAEAINEY----NGGVIMVSHDERL-IVETDCNLWVVENQ 777 (807)
T ss_pred CCCEEEecCCCCCcchhhHHHHHHHHHhc----cCcEEEEecccce-eeecCceEEEEccC
Confidence 99999999999999999999999998775 4579999999875 55544466666553
|
|
| >KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.4e-22 Score=190.26 Aligned_cols=209 Identities=23% Similarity=0.304 Sum_probs=165.1
Q ss_pred hhhccccccccc-ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc------------
Q 006505 45 LSKLEEAADSDG-VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK------------ 111 (643)
Q Consensus 45 ~~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~------------ 111 (643)
.++++++..+|. ..+++-|+|++++.|..+.++|.||||||||||+|+|..-...|.|.++|++.-.
T Consensus 13 aievsgl~f~y~~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgdl~Y 92 (291)
T KOG2355|consen 13 AIEVSGLQFKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGDLSY 92 (291)
T ss_pred eEEEeccEEecccCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCceeE
Confidence 467888888875 3589999999999999999999999999999999999987778999999987521
Q ss_pred --hhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHH
Q 006505 112 --AQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRV 189 (643)
Q Consensus 112 --~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv 189 (643)
.+|.+.++.-- +-.+-...++.+-| |+..- .+ -++-+++++.|+++- ..+...+|-|||+||
T Consensus 93 LGgeW~~~~~~ag-evplq~D~sae~mi-fgV~g----~d---p~Rre~LI~iLDIdl-------~WRmHkvSDGqrRRV 156 (291)
T KOG2355|consen 93 LGGEWSKTVGIAG-EVPLQGDISAEHMI-FGVGG----DD---PERREKLIDILDIDL-------RWRMHKVSDGQRRRV 156 (291)
T ss_pred ecccccccccccc-cccccccccHHHHH-hhccC----CC---hhHhhhhhhheeccc-------eEEEeeccccchhhh
Confidence 12333333333 21222345665543 44321 11 145567777777653 235678999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHH
Q 006505 190 SIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLL 269 (643)
Q Consensus 190 ~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 269 (643)
.|+..|++.=++|+|||-|-.||..++.++++.+++-++++|.||+..||-.+- +..+..+++.+++|+++-.-+.++.
T Consensus 157 QicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDG-Le~Wpthl~yi~~Gkl~~~l~~~~i 235 (291)
T KOG2355|consen 157 QICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDG-LETWPTHLVYIKSGKLVDNLKYQKI 235 (291)
T ss_pred HHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccc-hhhcchhEEEecCCeeeeccccchh
Confidence 999999999999999999999999999999999999999999999999999874 8899999999999999875555444
Q ss_pred H
Q 006505 270 S 270 (643)
Q Consensus 270 ~ 270 (643)
.
T Consensus 236 ~ 236 (291)
T KOG2355|consen 236 K 236 (291)
T ss_pred h
Confidence 3
|
|
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.8e-22 Score=213.56 Aligned_cols=202 Identities=23% Similarity=0.262 Sum_probs=158.8
Q ss_pred hhhhccccccccc--ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEE
Q 006505 44 ELSKLEEAADSDG--VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYV 121 (643)
Q Consensus 44 ~~~~~~~~~~~~~--~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv 121 (643)
..+++++++.... +..+++|+|++|+.|+-+.|.||||||||+|||+++|+.+..+|.+.--.+.-. +.+-|+
T Consensus 432 n~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~-----~~lffl 506 (659)
T KOG0060|consen 432 NAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGP-----KDLFFL 506 (659)
T ss_pred ceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCC-----CceEEe
Confidence 4556666654443 456788899999999999999999999999999999999989999975433211 457899
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcC------CCcCCCCCHHHHHHHHHHHHH
Q 006505 122 TQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVG------DDRVRGISGGERRRVSIGFDV 195 (643)
Q Consensus 122 ~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg------~~~~~~LSGGerqRv~ia~aL 195 (643)
||.|.+.-+ |.||.+.|+..--.+..+...++++.+.|+.++|.|..+..=| -+....||+||+||++.||.+
T Consensus 507 PQrPYmt~G-TLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLf 585 (659)
T KOG0060|consen 507 PQRPYMTLG-TLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLF 585 (659)
T ss_pred cCCCCcccc-chhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHH
Confidence 999987766 9999998874321122222234577888888888877643211 123567999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeC
Q 006505 196 IHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLAN 257 (643)
Q Consensus 196 ~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 257 (643)
.++|++-+|||.||++|......+.+.+++ .|.|.|-+.|..+ +.+.=|.++-|+.
T Consensus 586 y~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~----~giT~iSVgHRkS--L~kfHd~~L~~~g 641 (659)
T KOG0060|consen 586 YHKPKFAILDECTSAVTEDVEGALYRKCRE----MGITFISVGHRKS--LWKFHDYVLRMDG 641 (659)
T ss_pred hcCCceEEeechhhhccHHHHHHHHHHHHH----cCCeEEEeccHHH--HHhhhhEEEEecC
Confidence 999999999999999999999888887765 4999999999986 5677788888864
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-22 Score=217.19 Aligned_cols=202 Identities=20% Similarity=0.300 Sum_probs=147.2
Q ss_pred hhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEccCC
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRD 125 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~ 125 (643)
+.+++....||.+.+|++-++++..|.-++++||||+|||||||+|+. |+|. |-++. ++.+ --+++-..
T Consensus 81 i~~~~fdLa~G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~--~f~ve-qE~~--g~~t~~~~ 149 (582)
T KOG0062|consen 81 IHIDNFDLAYGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVS--GFHVE-QEVR--GDDTEALQ 149 (582)
T ss_pred eeeeeeeeeecchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcC--ccCch-hhee--ccchHHHh
Confidence 456778889999999999999999999999999999999999999997 3332 22321 1121 12444332
Q ss_pred CCCCCCCHHHHHHH-HHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 006505 126 TLFPLLTVEETLMF-SAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLIL 204 (643)
Q Consensus 126 ~l~~~lTv~E~l~~-~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illl 204 (643)
......|.++.+.. -..+. ...+.++...++|..+|.++... .++.+++|||=|-|+++||||..+|+||||
T Consensus 150 ~~l~~D~~~~dfl~~e~~l~---~~~~l~ei~~~~L~glGFt~emq----~~pt~slSGGWrMrlaLARAlf~~pDlLLL 222 (582)
T KOG0062|consen 150 SVLESDTERLDFLAEEKELL---AGLTLEEIYDKILAGLGFTPEMQ----LQPTKSLSGGWRMRLALARALFAKPDLLLL 222 (582)
T ss_pred hhhhccHHHHHHHHhhhhhh---ccchHHHHHHHHHHhCCCCHHHH----hccccccCcchhhHHHHHHHHhcCCCEEee
Confidence 22222244443322 11111 11123344455899999876442 347789999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeE-EEecChhHHH
Q 006505 205 DEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSV-LHHGTVDLLS 270 (643)
Q Consensus 205 DEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i-v~~G~~~~~~ 270 (643)
||||+.||..+..-+-+.|+.+ +.|+|++|||-+. +-..|..|+-+++-++ .|.|+.++..
T Consensus 223 DEPTNhLDv~av~WLe~yL~t~----~~T~liVSHDr~F-Ln~V~tdIIH~~~~kL~~YkGN~~~Fv 284 (582)
T KOG0062|consen 223 DEPTNHLDVVAVAWLENYLQTW----KITSLIVSHDRNF-LNTVCTDIIHLENLKLDYYKGNYSQFV 284 (582)
T ss_pred cCCcccchhHHHHHHHHHHhhC----CceEEEEeccHHH-HHHHHHHHHHHhhhhhhhhcCcHHHHH
Confidence 9999999999999999988764 5899999999775 7778888888877665 4667766654
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.9e-21 Score=204.68 Aligned_cols=170 Identities=32% Similarity=0.478 Sum_probs=128.8
Q ss_pred EecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCch---h---------hcc------cEEEEcc----CC
Q 006505 68 AKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKA---Q---------FRK------VSGYVTQ----RD 125 (643)
Q Consensus 68 i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~---~---------~~~------~i~yv~Q----~~ 125 (643)
.++|++++|+||||-||||-+|+|+|.+.|.=|+- ++.|-..+ . +++ ++..=+| -+
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~--~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iP 174 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELKPNLGRY--EDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIP 174 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCC--CCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHH
Confidence 57999999999999999999999999999986642 33221110 0 110 1122222 22
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q 006505 126 TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILD 205 (643)
Q Consensus 126 ~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlD 205 (643)
..+.. ||.|-|.- .+.+-..+++.+.|+|++..|+ .+++|||||-||++||.+++++++++++|
T Consensus 175 k~~KG-~v~elLk~----------~de~g~~devve~l~L~nvl~r-----~v~~LSGGELQr~aIaa~l~rdADvY~FD 238 (591)
T COG1245 175 KVVKG-KVGELLKK----------VDERGKFDEVVERLGLENVLDR-----DVSELSGGELQRVAIAAALLRDADVYFFD 238 (591)
T ss_pred HHhcc-hHHHHHHh----------hhhcCcHHHHHHHhcchhhhhh-----hhhhcCchHHHHHHHHHHHhccCCEEEEc
Confidence 22333 56555431 1112357889999999998855 56799999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeC
Q 006505 206 EPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLAN 257 (643)
Q Consensus 206 EPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 257 (643)
||||-||...+....+.++++++. +++||++.||+.. +--++|-|.++..
T Consensus 239 EpsSyLDi~qRl~~ar~Irel~~~-~k~ViVVEHDLav-LD~lsD~vhI~YG 288 (591)
T COG1245 239 EPSSYLDIRQRLNAARVIRELAED-GKYVIVVEHDLAV-LDYLSDFVHILYG 288 (591)
T ss_pred CCcccccHHHHHHHHHHHHHHhcc-CCeEEEEechHHH-HHHhhheeEEEec
Confidence 999999999999999999999985 8999999999862 4446899988863
|
|
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.85 E-value=2e-21 Score=192.57 Aligned_cols=147 Identities=20% Similarity=0.217 Sum_probs=111.0
Q ss_pred eeeceEEEEecCe-EEEEECCCCCCHHHHHHHHh--------cCCCCCccEEEECCCcCCchhhcccEEEEccCCCCCCC
Q 006505 60 VLDGVSCKAKPWE-ILAIVGPSGAGKSSLLEILA--------GKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPL 130 (643)
Q Consensus 60 iL~~vs~~i~~Ge-~~aIlG~nGaGKSTLL~~l~--------g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~ 130 (643)
-.-++|+++.+|+ +++|.||||||||||||+|+ |..-|.... ..++|+.|.-..
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~--------------~~~~~~~~~~~~--- 78 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEG--------------SSLPVFENIFAD--- 78 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCcccccc--------------ccCcCccEEEEe---
Confidence 3558999999995 89999999999999999998 433332100 113333332111
Q ss_pred CCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q 006505 131 LTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSG 210 (643)
Q Consensus 131 lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsg 210 (643)
++.++.. +.....+|+||||++.++++ +.+|+++++|||++|
T Consensus 79 --------------------------------lg~~~~l-----~~~~s~fs~g~~~~~~i~~~-~~~p~llllDEp~~g 120 (200)
T cd03280 79 --------------------------------IGDEQSI-----EQSLSTFSSHMKNIARILQH-ADPDSLVLLDELGSG 120 (200)
T ss_pred --------------------------------cCchhhh-----hcCcchHHHHHHHHHHHHHh-CCCCcEEEEcCCCCC
Confidence 1111111 22346899999999999987 489999999999999
Q ss_pred CCHHHHHHHH-HHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEec
Q 006505 211 LDSTSALQII-DMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHG 264 (643)
Q Consensus 211 LD~~~~~~i~-~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 264 (643)
||+.....+. ..++++.+ .|.|+|++||+. ++.+++|++..|++|++.+.+
T Consensus 121 lD~~~~~~i~~~~l~~l~~-~~~~vi~~tH~~--~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 121 TDPVEGAALAIAILEELLE-RGALVIATTHYG--ELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred CCHHHHHHHHHHHHHHHHh-cCCEEEEECCHH--HHHHHHhcCCCeEEEEEEEec
Confidence 9999999996 46788765 489999999984 578999999999999998874
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a |
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.9e-21 Score=205.37 Aligned_cols=199 Identities=25% Similarity=0.316 Sum_probs=161.6
Q ss_pred hhhhhhcccccccccccc--eeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEE
Q 006505 42 QEELSKLEEAADSDGVRR--VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSG 119 (643)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~--iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~ 119 (643)
..|.+++..+...|.... ++.+++..++.-+-.+++|+||+||||++|++.|-..|..|.+.+++ |.+++
T Consensus 359 ~~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~--------r~ri~ 430 (582)
T KOG0062|consen 359 SPPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP--------RLRIK 430 (582)
T ss_pred CCCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc--------cceec
Confidence 346778888888886655 99999999999999999999999999999999999999999887653 45688
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCC
Q 006505 120 YVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDP 199 (643)
Q Consensus 120 yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p 199 (643)
|-.|...=+-.+.|.+ +.+..+.+-+.+ ++.+++-+..+||+... ..+.+.+||||||-||++|.....+|
T Consensus 431 ~f~Qhhvd~l~~~v~~-vd~~~~~~pG~~----~ee~r~hl~~~Gl~g~l----a~~si~~LSGGQKsrvafA~~~~~~P 501 (582)
T KOG0062|consen 431 YFAQHHVDFLDKNVNA-VDFMEKSFPGKT----EEEIRRHLGSFGLSGEL----ALQSIASLSGGQKSRVAFAACTWNNP 501 (582)
T ss_pred chhHhhhhHHHHHhHH-HHHHHHhCCCCC----HHHHHHHHHhcCCCchh----hhccccccCCcchhHHHHHHHhcCCC
Confidence 9999754333344433 333344443333 34567888999997432 13357899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEE
Q 006505 200 KVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLH 262 (643)
Q Consensus 200 ~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~ 262 (643)
.+|+|||||+.||..+-..+.+.|+.. +-.||++|||.+. +...|+.+.+.++|++.-
T Consensus 502 hlLVLDEPTNhLD~dsl~AL~~Al~~F----~GGVv~VSHd~~f-i~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 502 HLLVLDEPTNHLDRDSLGALAKALKNF----NGGVVLVSHDEEF-ISSLCKELWVVEDGKVTP 559 (582)
T ss_pred cEEEecCCCccccHHHHHHHHHHHHhc----CCcEEEEECcHHH-HhhcCceeEEEcCCcEEe
Confidence 999999999999999999999999875 4479999999885 888999999999999864
|
|
| >cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.8e-21 Score=191.59 Aligned_cols=168 Identities=23% Similarity=0.319 Sum_probs=110.1
Q ss_pred eceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCC-------------------ccEE--EECCCcCCchhhcccEEE
Q 006505 62 DGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQ-------------------SGST--FVNGSPIDKAQFRKVSGY 120 (643)
Q Consensus 62 ~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~-------------------~G~I--~~~g~~~~~~~~~~~i~y 120 (643)
+++.+.+.+| +.+|+|||||||||||.+|.-..-.. ++.| .+++.+. ...++..+.+
T Consensus 15 ~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~~r~~~~~~~i~~g~~~~~v~~~~~~~~~-~~~~~n~~~~ 92 (213)
T cd03277 15 DETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEFVKRGCDEGTIEIELYGNPG-NIQVDNLCQF 92 (213)
T ss_pred ceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCccccccccCHHHHhhCCCCcEEEEEEEEeCCC-ccccCCceEE
Confidence 5566676666 88999999999999999987544211 1111 1111000 0112222334
Q ss_pred EccCCC-CCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHH----
Q 006505 121 VTQRDT-LFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDV---- 195 (643)
Q Consensus 121 v~Q~~~-l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL---- 195 (643)
++|+.. -+..+++.|.+ ..++-. ..+.+..+.+||||||||+.++.+|
T Consensus 93 ~~q~~~~~~~~~~~~e~l-----------------------~~~~~~----~~~~~~~~~~LS~G~~q~~~i~~~la~~~ 145 (213)
T cd03277 93 LPQDRVGEFAKLSPIELL-----------------------VKFREG----EQLQELDPHHQSGGERSVSTMLYLLSLQE 145 (213)
T ss_pred EchHHHHHHHhCChHhHh-----------------------eeeecC----CCccccchhhccccHHHHHHHHHHHHHHh
Confidence 555432 23333443332 111100 0011335679999999998877554
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCC-CEEEEEecCCchHHHhhcC--EEEEEeCCe
Q 006505 196 IHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRG-RTVILSIHQPGFRIVKMFN--SILMLANGS 259 (643)
Q Consensus 196 ~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g-~tvi~~~H~~~~~i~~~~D--~v~~L~~G~ 259 (643)
+.+|+++++||||+|||+.++..+++.|++++++.| .|+|++||++.. ..+.+| +|++|++|+
T Consensus 146 ~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~-~~~~~~~~~v~~l~~g~ 211 (213)
T cd03277 146 LTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLP-GLNYHEKMTVLCVYNGP 211 (213)
T ss_pred ccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhcc-CCcccCceEEEEEecCc
Confidence 589999999999999999999999999999976434 589999999863 667776 788888886
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.9e-21 Score=197.44 Aligned_cols=186 Identities=25% Similarity=0.377 Sum_probs=147.0
Q ss_pred ccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcC--------CCCCccEEEECCCcCCchhhcccEEEEccCC-
Q 006505 55 DGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGK--------LTPQSGSTFVNGSPIDKAQFRKVSGYVTQRD- 125 (643)
Q Consensus 55 ~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~--------~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~- 125 (643)
.....+|+|+|++++||++++|+|+|||||||||++|+|. ++|++|.|.+--.. ..+.+|-+.
T Consensus 393 ~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt--------~~a~iPge~E 464 (593)
T COG2401 393 VIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT--------VSALIPGEYE 464 (593)
T ss_pred eeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccc--------hhhccCcccc
Confidence 3456799999999999999999999999999999999996 45778888663211 235566542
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q 006505 126 TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILD 205 (643)
Q Consensus 126 ~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlD 205 (643)
.-|..-|+.|.+.- ... +.....++|++.|+.+..- -....++||-|||.|+.||.++...|.+++.|
T Consensus 465 p~f~~~tilehl~s-----~tG----D~~~AveILnraGlsDAvl---yRr~f~ELStGQKeR~KLAkllaerpn~~~iD 532 (593)
T COG2401 465 PEFGEVTILEHLRS-----KTG----DLNAAVEILNRAGLSDAVL---YRRKFSELSTGQKERAKLAKLLAERPNVLLID 532 (593)
T ss_pred cccCchhHHHHHhh-----ccC----chhHHHHHHHhhccchhhh---hhccHhhcCcchHHHHHHHHHHhcCCCcEEhh
Confidence 23445677776631 111 1234668999999975331 13467899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhh-cCEEEEEeCCeEE
Q 006505 206 EPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKM-FNSILMLANGSVL 261 (643)
Q Consensus 206 EPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~-~D~v~~L~~G~iv 261 (643)
|--+.||+.++..+.+-+.+++++.|.|++++||.|+. +-.+ =|+++++.=|++.
T Consensus 533 EF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv-~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 533 EFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEV-GNALRPDTLILVGYGKVP 588 (593)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHH-HhccCCceeEEeeccccc
Confidence 99999999999999999999999999999999999974 5556 4888888766543
|
|
| >cd03283 ABC_MutS-like MutS-like homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.9e-20 Score=183.96 Aligned_cols=148 Identities=19% Similarity=0.263 Sum_probs=109.3
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEccCCCCCCCCCHHHH
Q 006505 57 VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTVEET 136 (643)
Q Consensus 57 ~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~ 136 (643)
++.+++|+++.. |++++|+||||||||||+|+|+|... +...|.++... .+++|.+.+++.+|+.|+
T Consensus 13 ~~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-----l~~~G~~v~a~------~~~~q~~~l~~~~~~~d~ 79 (199)
T cd03283 13 EKRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-----LAQAGAPVCAS------SFELPPVKIFTSIRVSDD 79 (199)
T ss_pred CCeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-----HHHcCCEEecC------ccCcccceEEEeccchhc
Confidence 346888887775 79999999999999999999988543 12355554221 366787889999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Q 006505 137 LMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSA 216 (643)
Q Consensus 137 l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~ 216 (643)
+.++... ..++ .+++.++++.+++ .+|+++++|||++|+|+..+
T Consensus 80 l~~~~s~----~~~e-~~~~~~iL~~~~~-------------------------------~~p~llllDEp~~glD~~~~ 123 (199)
T cd03283 80 LRDGISY----FYAE-LRRLKEIVEKAKK-------------------------------GEPVLFLLDEIFKGTNSRER 123 (199)
T ss_pred cccccCh----HHHH-HHHHHHHHHhccC-------------------------------CCCeEEEEecccCCCCHHHH
Confidence 9775321 1222 2557777776652 68999999999999999999
Q ss_pred HHHH-HHHHHHHHhCCCEEEEEecCCchHHHhh--cCEEEEE
Q 006505 217 LQII-DMLKVMAETRGRTVILSIHQPGFRIVKM--FNSILML 255 (643)
Q Consensus 217 ~~i~-~~L~~l~~~~g~tvi~~~H~~~~~i~~~--~D~v~~L 255 (643)
..+. ..++++++ .|.|+|++||+++. +..+ .++|-.+
T Consensus 124 ~~l~~~ll~~l~~-~~~tiiivTH~~~~-~~~~~~~~~v~~~ 163 (199)
T cd03283 124 QAASAAVLKFLKN-KNTIGIISTHDLEL-ADLLDLDSAVRNY 163 (199)
T ss_pred HHHHHHHHHHHHH-CCCEEEEEcCcHHH-HHhhhcCCCeEEE
Confidence 8875 47888876 48999999999863 4433 3444443
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid |
| >cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.81 E-value=4e-20 Score=186.08 Aligned_cols=155 Identities=17% Similarity=0.206 Sum_probs=118.6
Q ss_pred cccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEE-EEccCCCCCCCCCHH
Q 006505 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSG-YVTQRDTLFPLLTVE 134 (643)
Q Consensus 56 ~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~-yv~Q~~~l~~~lTv~ 134 (643)
+.+.+.+|++++..+|++++|.||||+||||||++++-. .+..++| |||.+...++
T Consensus 15 ~~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~------------------~~la~~g~~vpa~~~~~~----- 71 (222)
T cd03285 15 DVAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVI------------------VLMAQIGCFVPCDSADIP----- 71 (222)
T ss_pred CCCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHH------------------HHHHHhCCCcCcccEEEe-----
Confidence 445789999999999999999999999999999999821 1222333 6665432221
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHH--hcCCCEEEEeCC---CC
Q 006505 135 ETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDV--IHDPKVLILDEP---TS 209 (643)
Q Consensus 135 E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL--~~~p~illlDEP---ts 209 (643)
.+++++..+|+++. ..+++|.|+++++.+++++ +.+|+++||||| |+
T Consensus 72 --------------------~~~~il~~~~l~d~--------~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~ 123 (222)
T cd03285 72 --------------------IVDCILARVGASDS--------QLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTS 123 (222)
T ss_pred --------------------ccceeEeeeccccc--------hhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCC
Confidence 12334555565532 2468999999999999999 899999999999 99
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecC
Q 006505 210 GLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGT 265 (643)
Q Consensus 210 gLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 265 (643)
+||+.+.... .++.+.++.|.++|++||+ .++.+++|++..+++|++...++
T Consensus 124 ~lD~~~~~~~--il~~l~~~~~~~vlisTH~--~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 124 TYDGFGLAWA--IAEYIATQIKCFCLFATHF--HELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred hHHHHHHHHH--HHHHHHhcCCCeEEEEech--HHHHHHhhcCCCeEEEEEEEEEe
Confidence 9999888543 3355544348999999997 36889999999999999987764
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.3e-19 Score=172.59 Aligned_cols=74 Identities=22% Similarity=0.326 Sum_probs=68.5
Q ss_pred CCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEe
Q 006505 181 ISGGERRRVSIGFDVI----HDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLA 256 (643)
Q Consensus 181 LSGGerqRv~ia~aL~----~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 256 (643)
||||||||++||++++ .+|+++++|||+++||+..+..+.+.|++++++ |.|+|+++|+++ ..+.+|+++.+.
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~-g~tiIiiSH~~~--~~~~adrvi~i~ 171 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKH-TSQFIVITLKKE--MFENADKLIGVL 171 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEECCHH--HHhhCCeEEEEE
Confidence 9999999999999996 699999999999999999999999999999864 899999999975 457899999997
Q ss_pred C
Q 006505 257 N 257 (643)
Q Consensus 257 ~ 257 (643)
+
T Consensus 172 ~ 172 (178)
T cd03239 172 F 172 (178)
T ss_pred E
Confidence 5
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.2e-18 Score=213.61 Aligned_cols=198 Identities=22% Similarity=0.317 Sum_probs=146.6
Q ss_pred ceeeceEEEEecCeEEEEECCCCCCHHHHHHHHh----------cCCCCCccEEEECCCcCCc-------------hhhc
Q 006505 59 RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILA----------GKLTPQSGSTFVNGSPIDK-------------AQFR 115 (643)
Q Consensus 59 ~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~----------g~~~~~~G~I~~~g~~~~~-------------~~~~ 115 (643)
.=|+||+.+|+-|.+++|.|.||||||||++-.. |. ..-+--|.+|..|+.. ..+|
T Consensus 1504 nNLk~v~v~iPlg~l~~vTGVSGSGKStLi~~~l~~~l~~~l~~g~-~~~~~vi~vdQspIgrt~RS~paTY~g~fd~IR 1582 (1809)
T PRK00635 1504 HTIQNLNVSAPLHSLVAISGVSGSGKTSLLLEGFYKQACALIEKGP-SVFSEIIFLDSHPQISSQRSDISTYFDIAPSLR 1582 (1809)
T ss_pred ccCCcceeeccCCcEEEEeCCCCCcHHHHHHHHHHHHHHHHhcccc-cccCcEEEEeCCCCCCCCCCchhhhhhhHHHHH
Confidence 3489999999999999999999999999997333 11 1113457777776621 0111
Q ss_pred ccE-------------------------------EEEccCCCCC--------------------------------CCCC
Q 006505 116 KVS-------------------------------GYVTQRDTLF--------------------------------PLLT 132 (643)
Q Consensus 116 ~~i-------------------------------~yv~Q~~~l~--------------------------------~~lT 132 (643)
+.. |++.=+-.++ -.||
T Consensus 1583 ~lFA~~~~ak~rg~~~~~FSfN~~~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e~L~v~~~gk~I~dvL~mt 1662 (1809)
T PRK00635 1583 NFYASLTQAKALNISASMFSTNTKQGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPLAQEVVYEGKHFGQLLQTP 1662 (1809)
T ss_pred HHHhcCHHHHHcCCCcccccccCCCCCCCCCccCceEEEecccCCCcccCCCCCCCcCCCHHHHhheeCCCCHHHHhcCC
Confidence 110 1211111111 2357
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcC---CCEEEEeCCCC
Q 006505 133 VEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHD---PKVLILDEPTS 209 (643)
Q Consensus 133 v~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~---p~illlDEPts 209 (643)
|.|.+.|.... .+-.+.-+.|..+||.-.. . ++...+|||||.||+-||.+|..+ +.+++|||||+
T Consensus 1663 v~ea~~~F~~~-------~~i~~~L~~L~~vGLgYl~---L-Gq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~ 1731 (1809)
T PRK00635 1663 IEEVAETFPFL-------KKIQKPLQALIDNGLGYLP---L-GQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIAT 1731 (1809)
T ss_pred HHHHHHHhhcc-------HHHHHHHHHHHHcCCCeee---C-CCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCC
Confidence 77776665321 1233456788888987543 2 567789999999999999999875 78999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEe------CCeEEEecChhHHHH
Q 006505 210 GLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLA------NGSVLHHGTVDLLSV 271 (643)
Q Consensus 210 gLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~------~G~iv~~G~~~~~~~ 271 (643)
||++.....+++.|+++.+. |.|||++.|+++ +.+.||.|+=|- .|++++.|+|+++.+
T Consensus 1732 GLh~~d~~~Ll~~l~~L~~~-g~tvivieH~~~--~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~ 1796 (1809)
T PRK00635 1732 SLDNQQKSALLVQLRTLVSL-GHSVIYIDHDPA--LLKQADYLIEMGPGSGKTGGKILFSGPPKDISA 1796 (1809)
T ss_pred CCCHHHHHHHHHHHHHHHhc-CCeEEEEeCCHH--HHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhh
Confidence 99999999999999999974 999999999984 677899999983 589999999999864
|
|
| >KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=6e-20 Score=195.97 Aligned_cols=172 Identities=26% Similarity=0.375 Sum_probs=133.9
Q ss_pred cccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEccCCCCCCCCCHHH
Q 006505 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTVEE 135 (643)
Q Consensus 56 ~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E 135 (643)
....++..++|.++||--+.|+||||||||+|.|+|+|+.+...|.... | .+..+-|+||.|..-.. |.+|
T Consensus 493 ~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~---P-----~~~~mFYIPQRPYms~g-tlRD 563 (728)
T KOG0064|consen 493 AGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSI---P-----RPNNIFYIPQRPYMSGG-TLRD 563 (728)
T ss_pred CcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeec---C-----CCcceEeccCCCccCcC-cccc
Confidence 4456889999999999999999999999999999999999886665543 1 12348899999876533 7777
Q ss_pred HHHHHHHhcCCCCHHHH------HHHHHHHHHHcCChhhhhhhcCC----CcCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q 006505 136 TLMFSAKLRLRLPQAQL------RARVKSLVKELGLEHVAMARVGD----DRVRGISGGERRRVSIGFDVIHDPKVLILD 205 (643)
Q Consensus 136 ~l~~~~~~~~~~~~~~~------~~~v~~~l~~lgl~~~~~~~vg~----~~~~~LSGGerqRv~ia~aL~~~p~illlD 205 (643)
.+-++ .+.++. ++..+.+|+.+.|++...+-.|= .....||||||||++.||.+-++|+.-+||
T Consensus 564 QIIYP------dS~e~~~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLD 637 (728)
T KOG0064|consen 564 QIIYP------DSSEQMKRKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLD 637 (728)
T ss_pred eeecC------CcHHHHHhcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhh
Confidence 77653 222221 24566788888888776554331 123469999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhh
Q 006505 206 EPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKM 248 (643)
Q Consensus 206 EPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~ 248 (643)
|.||+..+.....+.+..+ ..|.+.|-++|+|+ ++.+
T Consensus 638 EcTsAvsidvE~~i~~~ak----~~gi~llsithrps--lwk~ 674 (728)
T KOG0064|consen 638 ECTSAVSIDVEGKIFQAAK----DAGISLLSITHRPS--LWKY 674 (728)
T ss_pred hhhcccccchHHHHHHHHH----hcCceEEEeecCcc--HHHH
Confidence 9999999988877776654 46999999999997 4554
|
|
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.9e-18 Score=193.19 Aligned_cols=127 Identities=29% Similarity=0.493 Sum_probs=103.9
Q ss_pred CCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCC---CEEEEeCC
Q 006505 131 LTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDP---KVLILDEP 207 (643)
Q Consensus 131 lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p---~illlDEP 207 (643)
|||.|...|.... + .-.+.-+.|..+||.-.. . .++..+|||||.|||-+|.+|.... .+++||||
T Consensus 784 MTveEA~~FF~~~----p---~I~rkLqtL~dVGLgYi~---L-GQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEP 852 (935)
T COG0178 784 MTVEEALEFFEAI----P---KIARKLQTLVDVGLGYIK---L-GQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEP 852 (935)
T ss_pred ccHHHHHHHHhcc----h---HHHHHHHHHHHcCcceEe---c-CCccccccchHHHHHHHHHHHhhccCCCeEEEeCCC
Confidence 5677766665431 1 123344567777876432 2 5677899999999999999999876 89999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEE------eCCeEEEecChhHHHH
Q 006505 208 TSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILML------ANGSVLHHGTVDLLSV 271 (643)
Q Consensus 208 tsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~~ 271 (643)
|+||-.....++++.|.++.+. |.|||++.|+++ +.+.+|.|+=| ..|+++..|+|+++.+
T Consensus 853 TTGLH~~Di~kLl~VL~rLvd~-GnTViVIEHNLd--VIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 853 TTGLHFDDIKKLLEVLHRLVDK-GNTVIVIEHNLD--VIKTADWIIDLGPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecccc--eEeecCEEEEcCCCCCCCCceEEEecCHHHHHh
Confidence 9999999999999999999985 999999999985 78999999998 3589999999999864
|
|
| >cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.4e-19 Score=182.45 Aligned_cols=76 Identities=24% Similarity=0.375 Sum_probs=68.6
Q ss_pred CCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEE
Q 006505 179 RGISGGERRRVSIGFDVIH----DPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILM 254 (643)
Q Consensus 179 ~~LSGGerqRv~ia~aL~~----~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~ 254 (643)
..||||||||+++|++++. +|+++++||||+|||+.+...+.+.|+++++ +.|+|++||++. +.+.+|++++
T Consensus 169 ~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~--~~tii~isH~~~--~~~~~d~~~~ 244 (276)
T cd03241 169 KIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR--SHQVLCITHLPQ--VAAMADNHFL 244 (276)
T ss_pred hhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC--CCEEEEEechHH--HHHhcCcEEE
Confidence 3599999999999987654 9999999999999999999999999999864 789999999985 5689999999
Q ss_pred EeCC
Q 006505 255 LANG 258 (643)
Q Consensus 255 L~~G 258 (643)
|.+|
T Consensus 245 l~~~ 248 (276)
T cd03241 245 VEKE 248 (276)
T ss_pred EEEe
Confidence 9875
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.2e-19 Score=167.76 Aligned_cols=140 Identities=21% Similarity=0.295 Sum_probs=102.1
Q ss_pred eceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEccCCCCCCCCCHHHHHHHHH
Q 006505 62 DGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTVEETLMFSA 141 (643)
Q Consensus 62 ~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~ 141 (643)
...+..+.++.++.|+|||||||||+++++....-...|.+... ... +.-.++++....+
T Consensus 12 ~~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~-~~~------~~g~~~~~~~~~~------------- 71 (162)
T cd03227 12 VPNDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRR-SGV------KAGCIVAAVSAEL------------- 71 (162)
T ss_pred eccEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhcc-Ccc------cCCCcceeeEEEE-------------
Confidence 34455555667999999999999999999876654433333221 000 0001122211111
Q ss_pred HhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHH
Q 006505 142 KLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIH----DPKVLILDEPTSGLDSTSAL 217 (643)
Q Consensus 142 ~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~----~p~illlDEPtsgLD~~~~~ 217 (643)
+. ...+||+||+||+++|++|.. +|+++++|||++|+|+....
T Consensus 72 -----------------------i~----------~~~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~ 118 (162)
T cd03227 72 -----------------------IF----------TRLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQ 118 (162)
T ss_pred -----------------------eh----------heeeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHH
Confidence 00 012499999999999999987 78999999999999999999
Q ss_pred HHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeC
Q 006505 218 QIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLAN 257 (643)
Q Consensus 218 ~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 257 (643)
.+.+.+.++.++ |.++|++||+++ +.+.+|+++.|+.
T Consensus 119 ~l~~~l~~~~~~-~~~vii~TH~~~--~~~~~d~~~~l~~ 155 (162)
T cd03227 119 ALAEAILEHLVK-GAQVIVITHLPE--LAELADKLIHIKK 155 (162)
T ss_pred HHHHHHHHHHhc-CCEEEEEcCCHH--HHHhhhhEEEEEE
Confidence 999999998776 899999999985 5678999999964
|
These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. |
| >cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-18 Score=173.34 Aligned_cols=155 Identities=17% Similarity=0.181 Sum_probs=105.3
Q ss_pred ceEEEEecCeEEEEECCCCCCHHHHHHHHhcCC-CCCccEEEECCCcCCchhhcccEEEEccCCCCCCCCCHHHHHHHHH
Q 006505 63 GVSCKAKPWEILAIVGPSGAGKSSLLEILAGKL-TPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTVEETLMFSA 141 (643)
Q Consensus 63 ~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~-~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~ 141 (643)
..++++.+|++++|+|||||||||||++|++.. .+..|... . ..+..++|..|. +..++..+++
T Consensus 21 ~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~------~--~~~~~i~~~dqi---~~~~~~~d~i---- 85 (202)
T cd03243 21 PNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFV------P--AESASIPLVDRI---FTRIGAEDSI---- 85 (202)
T ss_pred eeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCc------c--ccccccCCcCEE---EEEecCcccc----
Confidence 345556689999999999999999999999543 22222211 0 011223332221 1111111110
Q ss_pred HhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH
Q 006505 142 KLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIID 221 (643)
Q Consensus 142 ~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~ 221 (643)
....+.+|++++ |++.+.+++.+|+++++||||+|+|+.....+..
T Consensus 86 ---------------------------------~~~~s~~~~e~~-~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~ 131 (202)
T cd03243 86 ---------------------------------SDGRSTFMAELL-ELKEILSLATPRSLVLIDELGRGTSTAEGLAIAY 131 (202)
T ss_pred ---------------------------------cCCceeHHHHHH-HHHHHHHhccCCeEEEEecCCCCCCHHHHHHHHH
Confidence 112345565555 4777788899999999999999999999988865
Q ss_pred -HHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHH
Q 006505 222 -MLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLL 269 (643)
Q Consensus 222 -~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 269 (643)
+++.+.+ .+.++|++||++ ++.+.+|++..++.|++...++..+.
T Consensus 132 ~ll~~l~~-~~~~vi~~tH~~--~~~~~~~~~~~l~~~~~~~~~~~~~~ 177 (202)
T cd03243 132 AVLEHLLE-KGCRTLFATHFH--ELADLPEQVPGVKNLHMEELITTGGL 177 (202)
T ss_pred HHHHHHHh-cCCeEEEECChH--HHHHHhhcCCCeEEEEEEEEecCCee
Confidence 4666665 489999999996 46788999999999999988875443
|
Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.5e-17 Score=196.15 Aligned_cols=134 Identities=26% Similarity=0.455 Sum_probs=109.7
Q ss_pred CCCCCHHHHHHHHHHhcCCCC--------HHHHHHHHHHHHHHcCChhh-hhhhcCCCcCCCCCHHHHHHHHHHHHHhcC
Q 006505 128 FPLLTVEETLMFSAKLRLRLP--------QAQLRARVKSLVKELGLEHV-AMARVGDDRVRGISGGERRRVSIGFDVIHD 198 (643)
Q Consensus 128 ~~~lTv~E~l~~~~~~~~~~~--------~~~~~~~v~~~l~~lgl~~~-~~~~vg~~~~~~LSGGerqRv~ia~aL~~~ 198 (643)
+-.+||.|.+.|.-.+..+.. -++..++++ .|+.+||.+. . ++.+.+|||||||||.||++|..+
T Consensus 434 ~~~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~l~l-----~r~~~~LSgGE~QRv~LA~aL~~~ 507 (943)
T PRK00349 434 VSELSIGEALEFFENLKLSEQEAKIAEPILKEIRERLK-FLVDVGLDYLTL-----SRSAGTLSGGEAQRIRLATQIGSG 507 (943)
T ss_pred HhcCcHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH-HhhccccCCCCC-----CCchhhCCHHHHHHHHHHHHHhhC
Confidence 456899999998554432211 013344453 6788888754 4 457789999999999999999999
Q ss_pred C--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEE------eCCeEEEecChhHHH
Q 006505 199 P--KVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILML------ANGSVLHHGTVDLLS 270 (643)
Q Consensus 199 p--~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~ 270 (643)
| ++++|||||+|||+..+.++.+.|+++++ .|.|||+++|+++ ++ ..+|+|++| ++|++++.|+++++.
T Consensus 508 ~~~~llILDEPtagLd~~~~~~L~~~L~~L~~-~G~TVIvVeH~~~-~i-~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~ 584 (943)
T PRK00349 508 LTGVLYVLDEPSIGLHQRDNDRLIETLKHLRD-LGNTLIVVEHDED-TI-RAADYIVDIGPGAGVHGGEVVASGTPEEIM 584 (943)
T ss_pred CCCcEEEecCCccCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHH-HH-HhCCEEEEeccccCCCCCEEeeccCHHHHh
Confidence 7 99999999999999999999999999976 4999999999987 35 579999999 999999999998874
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.2e-17 Score=193.05 Aligned_cols=134 Identities=24% Similarity=0.436 Sum_probs=106.9
Q ss_pred CCCCCHHHHHHHHHHhcCCCC-H-------HHHHHHHHHHHHHcCChhh-hhhhcCCCcCCCCCHHHHHHHHHHHHHhcC
Q 006505 128 FPLLTVEETLMFSAKLRLRLP-Q-------AQLRARVKSLVKELGLEHV-AMARVGDDRVRGISGGERRRVSIGFDVIHD 198 (643)
Q Consensus 128 ~~~lTv~E~l~~~~~~~~~~~-~-------~~~~~~v~~~l~~lgl~~~-~~~~vg~~~~~~LSGGerqRv~ia~aL~~~ 198 (643)
+-.|||.|.+.|...+..... . ++..+++ +.+..+||... . ++.+.+|||||+|||.||++|+.+
T Consensus 432 ~~~~~v~~~~~~~~~l~~~~~~~~ia~~i~~~i~~rl-~~L~~vgL~~l~l-----~r~~~tLSGGE~QRv~LA~aL~~~ 505 (924)
T TIGR00630 432 VSELSIREAHEFFNQLDLTPEEKKIAEEILKEIKERL-GFLIDVGLDYLTL-----SRAAGTLSGGEAQRIRLATQIGSG 505 (924)
T ss_pred HhcCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HhHhhcccccccc-----CCCcCcCCHHHHHHHHHHHHHhhC
Confidence 346899999888766532211 1 1112222 23566777543 3 557789999999999999999998
Q ss_pred C--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEE------eCCeEEEecChhHHH
Q 006505 199 P--KVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILML------ANGSVLHHGTVDLLS 270 (643)
Q Consensus 199 p--~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~ 270 (643)
| ++++|||||+|||+.+...+.+.|++++++ |.|||+++|+++ .+ ..+|+|++| ++|++++.|+++++.
T Consensus 506 ~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~-G~TVIvVeHd~~-~i-~~aD~vi~LgpgaG~~~G~Iv~~g~~~el~ 582 (924)
T TIGR00630 506 LTGVLYVLDEPSIGLHQRDNERLINTLKRLRDL-GNTVIVVEHDEE-TI-RAADYVIDIGPGAGIHGGEVVASGTPEEIL 582 (924)
T ss_pred CCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhC-CCEEEEEECCHH-HH-hhCCEEEEecccccCCCCEEeeccCHHHHh
Confidence 6 899999999999999999999999999875 999999999986 34 589999999 899999999998874
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.73 E-value=9.8e-19 Score=182.70 Aligned_cols=212 Identities=24% Similarity=0.335 Sum_probs=151.8
Q ss_pred hhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcC---CCCC------ccEEEECCCcCCc---hh
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGK---LTPQ------SGSTFVNGSPIDK---AQ 113 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~---~~~~------~G~I~~~g~~~~~---~~ 113 (643)
+++++...+-.++.++.|-|+.|-.|..++++||||-||||||+.|+.+ ++|. +-+|..+..+.-. ..
T Consensus 265 IKiEnF~ISA~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl~a 344 (807)
T KOG0066|consen 265 IKIENFDISAQGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLKA 344 (807)
T ss_pred ceeeeeeeecccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHHHh
Confidence 4566666677778899999999999999999999999999999999986 3332 3344443332100 00
Q ss_pred hcccEEEEccCCCC-----CCCCCHHHHHHHH-HHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHH
Q 006505 114 FRKVSGYVTQRDTL-----FPLLTVEETLMFS-AKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERR 187 (643)
Q Consensus 114 ~~~~i~yv~Q~~~l-----~~~lTv~E~l~~~-~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerq 187 (643)
-.++...+..++.| -...|+.|-+.-. ..+|. ......+.++..+|.-||.+.... +++....|||=|-
T Consensus 345 D~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELra-iGA~sAEarARRILAGLGFskEMQ----~rPt~kFSGGWRM 419 (807)
T KOG0066|consen 345 DKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRA-IGADSAEARARRILAGLGFSKEMQ----ERPTTKFSGGWRM 419 (807)
T ss_pred hHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHH-hccccchhHHHHHHhhcCCChhHh----cCCccccCCceee
Confidence 01112222211111 2345777766532 23332 112234567788999999876542 4466789999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEE-ecCh
Q 006505 188 RVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLH-HGTV 266 (643)
Q Consensus 188 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~-~G~~ 266 (643)
||++||||..+|-+|.|||||+.||..+..-+-+.|+.+ .+|.++++||-.. +-+.|..|+.|++-++-| .|+.
T Consensus 420 RvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgW----kKTLLIVSHDQgF-LD~VCtdIIHLD~qkLhyYrGNY 494 (807)
T KOG0066|consen 420 RVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQGF-LDSVCTDIIHLDNQKLHYYRGNY 494 (807)
T ss_pred ehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhh----hheeEEEecccch-HHHHHHHHhhhhhhhhhhhcchH
Confidence 999999999999999999999999999988888888776 4699999999885 788999999999887654 4554
Q ss_pred h
Q 006505 267 D 267 (643)
Q Consensus 267 ~ 267 (643)
.
T Consensus 495 ~ 495 (807)
T KOG0066|consen 495 T 495 (807)
T ss_pred H
Confidence 3
|
|
| >cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage | Back alignment and domain information |
|---|
Probab=99.71 E-value=9.1e-17 Score=166.68 Aligned_cols=78 Identities=15% Similarity=0.272 Sum_probs=63.4
Q ss_pred cCCCCCHHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHh
Q 006505 177 RVRGISGGERRRVSIGFDVI---------HDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVK 247 (643)
Q Consensus 177 ~~~~LSGGerqRv~ia~aL~---------~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~ 247 (643)
...-+|+||||++++|++|+ .+|+++++||||++||+..+..+.+.|+++ +. +++++|+.. .+.+
T Consensus 180 ~~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~----~q-~ii~~~~~~-~~~~ 253 (270)
T cd03242 180 AADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGR----VQ-TFVTTTDLA-DFDA 253 (270)
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcC----CC-EEEEeCCch-hccc
Confidence 34568999999999999985 799999999999999999999999999764 33 455555544 3566
Q ss_pred hc---CEEEEEeCCeE
Q 006505 248 MF---NSILMLANGSV 260 (643)
Q Consensus 248 ~~---D~v~~L~~G~i 260 (643)
++ ++++.+++|++
T Consensus 254 ~~~~~~~i~~l~~g~i 269 (270)
T cd03242 254 LWLRRAQIFRVDAGTL 269 (270)
T ss_pred hhccCccEEEEeCcEE
Confidence 66 68999999985
|
When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.5e-17 Score=161.75 Aligned_cols=142 Identities=15% Similarity=0.228 Sum_probs=103.6
Q ss_pred cccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccE-EEEccCCCCCCCCCHH
Q 006505 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVS-GYVTQRDTLFPLLTVE 134 (643)
Q Consensus 56 ~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i-~yv~Q~~~l~~~lTv~ 134 (643)
.++.+.+|+++++++|++++|+||||+||||+++++++.. +..++ .|| +...+.+++.
T Consensus 14 ~~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~------------------~la~~G~~v---pa~~~~l~~~ 72 (204)
T cd03282 14 KKNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA------------------IMAQIGCFV---PAEYATLPIF 72 (204)
T ss_pred CCcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH------------------HHHHcCCCc---chhhcCccCh
Confidence 4567999999999999999999999999999999999873 11122 244 3344556777
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q 006505 135 ETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDST 214 (643)
Q Consensus 135 E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~ 214 (643)
|++.... +..+.. .+..+.+|+|++|+ +.+.+++++|+++++|||++|+|+.
T Consensus 73 d~I~~~~----------------------~~~d~~-----~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~ 124 (204)
T cd03282 73 NRLLSRL----------------------SNDDSM-----ERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSA 124 (204)
T ss_pred hheeEec----------------------CCcccc-----chhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHH
Confidence 7664221 111111 12345789999965 5667788999999999999999998
Q ss_pred HHHHH-HHHHHHHHHhCCCEEEEEecCCchHHHhhc
Q 006505 215 SALQI-IDMLKVMAETRGRTVILSIHQPGFRIVKMF 249 (643)
Q Consensus 215 ~~~~i-~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~ 249 (643)
....+ ...++.+.+. |.++|++||+.+ +.+.+
T Consensus 125 ~~~~l~~~il~~l~~~-~~~~i~~TH~~~--l~~~~ 157 (204)
T cd03282 125 DGFAISLAILECLIKK-ESTVFFATHFRD--IAAIL 157 (204)
T ss_pred HHHHHHHHHHHHHHhc-CCEEEEECChHH--HHHHh
Confidence 76665 4567777764 999999999975 34443
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >TIGR02858 spore_III_AA stage III sporulation protein AA | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.3e-16 Score=161.44 Aligned_cols=140 Identities=21% Similarity=0.266 Sum_probs=99.9
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc----hhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCC
Q 006505 72 EILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK----AQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRL 147 (643)
Q Consensus 72 e~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~----~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~ 147 (643)
.-++|+||||||||||+++|+|.++|++|+|.++|+++.. .++.+.++++||++ +.+.++|.++..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~r~~v~~~~~--------- 181 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGIRTDVLDGCP--------- 181 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhccccccc-ccccccccccch---------
Confidence 5789999999999999999999999999999999998742 34555678899865 344556655421
Q ss_pred CHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 006505 148 PQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMA 227 (643)
Q Consensus 148 ~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~ 227 (643)
+.+ |+ .+.....+|+++++|||++ ...+..+++.+
T Consensus 182 -k~~--------------------------------~~-----~~~i~~~~P~villDE~~~------~e~~~~l~~~~- 216 (270)
T TIGR02858 182 -KAE--------------------------------GM-----MMLIRSMSPDVIVVDEIGR------EEDVEALLEAL- 216 (270)
T ss_pred -HHH--------------------------------HH-----HHHHHhCCCCEEEEeCCCc------HHHHHHHHHHH-
Confidence 000 10 1222336999999999974 33345555554
Q ss_pred HhCCCEEEEEecCCchHHH------------hhcCEEEEEeCCeEEEecChhHH
Q 006505 228 ETRGRTVILSIHQPGFRIV------------KMFNSILMLANGSVLHHGTVDLL 269 (643)
Q Consensus 228 ~~~g~tvi~~~H~~~~~i~------------~~~D~v~~L~~G~iv~~G~~~~~ 269 (643)
+ .|.|+|+++|+++.+-. .+|||+++|++|+ ..|.++++
T Consensus 217 ~-~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i 267 (270)
T TIGR02858 217 H-AGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAV 267 (270)
T ss_pred h-CCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeec
Confidence 3 49999999998653222 5689999999887 56665543
|
Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. |
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.1e-15 Score=160.23 Aligned_cols=178 Identities=24% Similarity=0.360 Sum_probs=138.5
Q ss_pred ccceeeceEEEEecC-----eEEEEECCCCCCHHHHHHHHhcCCCCCcc-EEEECCCcCCchhhcccEEEEccCCCCCCC
Q 006505 57 VRRVLDGVSCKAKPW-----EILAIVGPSGAGKSSLLEILAGKLTPQSG-STFVNGSPIDKAQFRKVSGYVTQRDTLFPL 130 (643)
Q Consensus 57 ~~~iL~~vs~~i~~G-----e~~aIlG~nGaGKSTLL~~l~g~~~~~~G-~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~ 130 (643)
.+..+.+..+.|+.| |++..+|.||.|||||+++++|+++|++| +|-. -.++|=||.-.--..
T Consensus 348 m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~-----------lnVSykpqkispK~~ 416 (592)
T KOG0063|consen 348 MKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPV-----------LNVSYKPQKISPKRE 416 (592)
T ss_pred ceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCcccc-----------cceeccccccCcccc
Confidence 345677888888877 57899999999999999999999999854 3311 236777776433233
Q ss_pred CCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q 006505 131 LTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSG 210 (643)
Q Consensus 131 lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsg 210 (643)
-||++.+.-- .| +.-...+-+.++++-|.+++..|+ .+.+|||||+|||++|..|-..+++++.|||.+-
T Consensus 417 ~tvR~ll~~k--Ir---~ay~~pqF~~dvmkpL~ie~i~dq-----evq~lSggelQRval~KOGGKpAdvYliDEpsAy 486 (592)
T KOG0063|consen 417 GTVRQLLHTK--IR---DAYMHPQFVNDVMKPLQIENIIDQ-----EVQGLSGGELQRVALALCLGKPADVYLIDEPSAY 486 (592)
T ss_pred chHHHHHHHH--hH---hhhcCHHHHHhhhhhhhHHHHHhH-----HhhcCCchhhHHHHHHHhcCCCCceEEecCchhh
Confidence 4888876532 12 111223568889999999888755 5679999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEe
Q 006505 211 LDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLA 256 (643)
Q Consensus 211 LD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 256 (643)
||+..+...-+.+++.--+.++|-.++.||.-. .--++|||++..
T Consensus 487 lDSeQRi~AskvikRfilhakktafvVEhdfIm-aTYladrvivf~ 531 (592)
T KOG0063|consen 487 LDSEQRIIASKVIKRFILHAKKTAFVVEHDFIM-ATYLADRVIVFE 531 (592)
T ss_pred cChHHHHHHHHHHHHHHHhccchhhhhhhHHHH-HHhhcceeEEEe
Confidence 999999999999988766668999999999643 234689988764
|
|
| >cd03284 ABC_MutS1 MutS1 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.1e-16 Score=155.70 Aligned_cols=160 Identities=19% Similarity=0.171 Sum_probs=109.2
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEccCCCCCCCCCHHHH
Q 006505 57 VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTVEET 136 (643)
Q Consensus 57 ~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~ 136 (643)
.+.+.+|++++.++ ++++|.||||||||||||+|++..-.. + .|..+.. .+..++++.| +++.+++.|+
T Consensus 17 ~~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~--~---~g~~vp~--~~~~i~~~~~---i~~~~~~~~~ 85 (216)
T cd03284 17 EPFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALLA--Q---IGSFVPA--SKAEIGVVDR---IFTRIGASDD 85 (216)
T ss_pred CceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHh--c---cCCeecc--ccceecceee---EeccCCchhh
Confidence 45689999999988 999999999999999999998754221 1 1222211 1245667654 5677777777
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC---CCCCCH
Q 006505 137 LMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEP---TSGLDS 213 (643)
Q Consensus 137 l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEP---tsgLD~ 213 (643)
+..+.. . . ..|.++++-+...+.+|++++|||| |+++|.
T Consensus 86 ls~g~s------~-----f---------------------------~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~ 127 (216)
T cd03284 86 LAGGRS------T-----F---------------------------MVEMVETANILNNATERSLVLLDEIGRGTSTYDG 127 (216)
T ss_pred hccCcc------h-----H---------------------------HHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHH
Confidence 643210 0 0 1233334444444679999999999 888887
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHH
Q 006505 214 TSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLL 269 (643)
Q Consensus 214 ~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 269 (643)
... ....++.+.+..+.++|++||+. ++.+++|++.-+.+|++...+..+++
T Consensus 128 ~~~--~~~il~~l~~~~~~~vi~~TH~~--~l~~l~~~~~~v~~~~~~~~~~~~~l 179 (216)
T cd03284 128 LSI--AWAIVEYLHEKIGAKTLFATHYH--ELTELEGKLPRVKNFHVAVKEKGGGV 179 (216)
T ss_pred HHH--HHHHHHHHHhccCCcEEEEeCcH--HHHHHhhcCCCeEEEEEEEEeeCCeE
Confidence 653 23344445443488999999996 57889998888888998887766654
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam |
| >TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein | Back alignment and domain information |
|---|
Probab=99.56 E-value=1e-12 Score=133.46 Aligned_cols=226 Identities=14% Similarity=0.134 Sum_probs=162.4
Q ss_pred HHHHHhhcChHHHHHHHHHHHHHHHHHHHHhccC-CCC--hhhH----HHHHHHHHHHHHHHHHHHHhHHHHH-HHhhHH
Q 006505 373 RFSKNIFRTKELFACRTIQMLISGIVLGSIFHNV-KDD--LTGT----EEKVGLFAFILTFLLSCTTEALPIF-LQEREI 444 (643)
Q Consensus 373 R~~~~~~Rd~~~~~~r~~~~i~~~li~G~~f~~l-~~~--~~~~----~~r~g~lf~~~~~~~~~~~~~~~~f-~~er~v 444 (643)
|+++..+|||..+..-+++.+++.+++|.++-.. +.+ ..|. +--.|++.+........ ...... -.|+.+
T Consensus 1 re~~~~~r~~~~~~~~l~~Pl~~~~~~~~~~~~~~~~~~~~~g~~y~~fl~~G~~~~~~~~~~~~--~~~~~~~~~~~g~ 78 (236)
T TIGR01247 1 RELKRFIRSRSRIVGSILNPLLWLIFFGKGWSGAFRFPMIFGGVDYMTYLVPGIVAMTVFNMSFF--SGISVIWDRQFGF 78 (236)
T ss_pred CchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCcHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHhCH
Confidence 6788899999999999999999999999987543 111 1121 11123333222222211 122221 123333
Q ss_pred HHHHhCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHH
Q 006505 445 LMKETSCGSYRVSSYAIANGLVYLPFLLILAILFSVPLYWIVGLNPNLMAFFHFLLLIWLILYTANSVVVCFSALVPNFI 524 (643)
Q Consensus 445 ~~rE~~~~~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~~~~~l~~~~~~s~~~~i~~~~~~~~ 524 (643)
+.| ....-.++..|++||.+.+++..++..+++..+.|++.+++. ..++.+++..++..++..++|.++++..++.+
T Consensus 79 ~~~-~~~~P~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~~--~~~~~~~~~~~l~~~~~~~lg~~l~~~~~~~~ 155 (236)
T TIGR01247 79 LKE-ILVAPASRVEMIVGRILGGSTVAMIQGAIILALSFIVAILKP--SGVIPTLVLAFIVGVALSGLGVAIAARMDSME 155 (236)
T ss_pred HHH-HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 333 333345688999999999999999999999999998877554 34555555666677788999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCCccchhhhhhccChhHHHHHHHHHHhhCCCCccccccCCccccchHHHHHhcCCCC
Q 006505 525 VGNSVISGVMGSFFLFSGYFISKHGIPDYWIFMHYISLFKYPFEQFLINEFSDSDKCLQYIFGKCVVKGEDVLREAGYEE 604 (643)
Q Consensus 525 ~a~~~~~~~~~~~~lfsGf~i~~~~ip~~~~Wl~yiSp~~y~~eal~~nef~~~~~C~~~~~~~c~~~G~~~L~~~g~~~ 604 (643)
.++.+.+.+..+++.+||.+.|.+.+|+|++|+.+++|++|+.|++-..-.++. ..
T Consensus 156 ~~~~i~~~~~~~l~~lsG~~~P~~~~P~~~~~i~~~~P~~~~~~~~r~~~~~~~------------------------~~ 211 (236)
T TIGR01247 156 GFQIIMSMLMLPMFFLSGAFYPITTMPAWMQGLAKINPLTYAVDGARYYLAGVS------------------------PT 211 (236)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCHHhCHHHHHHHHHHCcHHHHHHHHHHHHhCCC------------------------cc
Confidence 999999999999999999999999999999999999999999998654333221 01
Q ss_pred CChHHHHHHHHHHHHHHHHHHHH
Q 006505 605 ESSWRNLVIMVGFILIYRFISYV 627 (643)
Q Consensus 605 ~~~w~~~~il~~~~~~~~~l~~~ 627 (643)
.+.|.++++++.+.+++.+++..
T Consensus 212 ~~~~~~~~~l~~~~~~~~~l~~~ 234 (236)
T TIGR01247 212 FPLEQDLLVLTLLAVIFVGIAAV 234 (236)
T ss_pred cchHHHHHHHHHHHHHHHHHHHH
Confidence 23567889999988888776543
|
This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK00064 recF recombination protein F; Reviewed | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.2e-13 Score=147.07 Aligned_cols=79 Identities=18% Similarity=0.362 Sum_probs=66.9
Q ss_pred cCCCCCHHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHh
Q 006505 177 RVRGISGGERRRVSIGFDVI---------HDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVK 247 (643)
Q Consensus 177 ~~~~LSGGerqRv~ia~aL~---------~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~ 247 (643)
....+|+||+|++++|+.|+ .+|++++||||+++||+..+..+.+.+.++ +..+++++|+++ .+..
T Consensus 270 ~~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~----~~qv~it~~~~~-~~~~ 344 (361)
T PRK00064 270 AADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL----GAQVFITTTDLE-DLAD 344 (361)
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc----CCEEEEEcCChh-hhhh
Confidence 44679999999999999885 799999999999999999999999988753 457899999876 3555
Q ss_pred hc--CEEEEEeCCeE
Q 006505 248 MF--NSILMLANGSV 260 (643)
Q Consensus 248 ~~--D~v~~L~~G~i 260 (643)
.+ ++++.+++|++
T Consensus 345 ~~~~~~i~~v~~G~i 359 (361)
T PRK00064 345 LLENAKIFHVEQGKI 359 (361)
T ss_pred hhccCcEEEEeCCEE
Confidence 53 57999999986
|
|
| >smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family | Back alignment and domain information |
|---|
Probab=99.53 E-value=6e-15 Score=144.51 Aligned_cols=84 Identities=14% Similarity=0.162 Sum_probs=60.2
Q ss_pred cCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEE
Q 006505 177 RVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQII-DMLKVMAETRGRTVILSIHQPGFRIVKMFNSILML 255 (643)
Q Consensus 177 ~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~-~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L 255 (643)
..+.+|+|++|...+.. .+.+|+++++|||++|+|+.....+. ..++.+.++.+.++|++||++ ++.+++|+---+
T Consensus 58 ~~s~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~--~l~~~~~~~~~v 134 (185)
T smart00534 58 GLSTFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYH--ELTKLADEHPGV 134 (185)
T ss_pred cccHHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHHHhhcCccc
Confidence 34578888776433333 34599999999999999999888775 556777653489999999997 467888754444
Q ss_pred eCCeEEEe
Q 006505 256 ANGSVLHH 263 (643)
Q Consensus 256 ~~G~iv~~ 263 (643)
.++++...
T Consensus 135 ~~~~~~~~ 142 (185)
T smart00534 135 RNLHMSAD 142 (185)
T ss_pred eEEEEEEE
Confidence 44554443
|
|
| >PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression [] | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.1e-15 Score=148.15 Aligned_cols=88 Identities=24% Similarity=0.458 Sum_probs=65.7
Q ss_pred HHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q 006505 154 ARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVI----HDPKVLILDEPTSGLDSTSALQIIDMLKVMAET 229 (643)
Q Consensus 154 ~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~----~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~ 229 (643)
+.+.+.++..++.. ..+|||||.+++||.-|+ .++++++||||.++||...+..+.++|+++.+
T Consensus 121 ~~~~~~l~~~~i~~-----------~~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~- 188 (220)
T PF02463_consen 121 KDLEELLPEVGISP-----------EFLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK- 188 (220)
T ss_dssp HHHHHHHHCTTTTT-----------TGS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT-
T ss_pred cccccccccccccc-----------cccccccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 44556666655532 389999999999997663 47899999999999999999999999999864
Q ss_pred CCCEEEEEecCCchHHHhhcCEEEEEe
Q 006505 230 RGRTVILSIHQPGFRIVKMFNSILMLA 256 (643)
Q Consensus 230 ~g~tvi~~~H~~~~~i~~~~D~v~~L~ 256 (643)
+.-+|++||++ ..++.+|+.+.+.
T Consensus 189 -~~Q~ii~Th~~--~~~~~a~~~~~v~ 212 (220)
T PF02463_consen 189 -QSQFIITTHNP--EMFEDADKLIGVT 212 (220)
T ss_dssp -TSEEEEE-S-H--HHHTT-SEEEEEE
T ss_pred -ccccccccccc--ccccccccccccc
Confidence 57899999997 4789999887764
|
The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A .... |
| >cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.1e-13 Score=138.67 Aligned_cols=135 Identities=21% Similarity=0.204 Sum_probs=90.9
Q ss_pred cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhc--CCCCCccEEEECCCcCCchhhcccEEEEccCCCCC-CCCCHH
Q 006505 58 RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAG--KLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLF-PLLTVE 134 (643)
Q Consensus 58 ~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g--~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~-~~lTv~ 134 (643)
+.+=+|+++.=..+.+++|.||||+|||||||.++. .. +..|...... .-.++|..|....+ ...++.
T Consensus 16 ~~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~--------~~~~~~~d~i~~~l~~~~si~ 86 (213)
T cd03281 16 SFVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD--------SATIGLVDKIFTRMSSRESVS 86 (213)
T ss_pred ceEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC--------CcEEeeeeeeeeeeCCccChh
Confidence 345566665432238999999999999999999984 33 4456554321 12366776653221 112222
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q 006505 135 ETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDST 214 (643)
Q Consensus 135 E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~ 214 (643)
+++ +.. .-|-||++++++++.+|+++++|||++|+|+.
T Consensus 87 ~~~----------------------------S~f--------------~~el~~l~~~l~~~~~~slvllDE~~~gtd~~ 124 (213)
T cd03281 87 SGQ----------------------------SAF--------------MIDLYQVSKALRLATRRSLVLIDEFGKGTDTE 124 (213)
T ss_pred hcc----------------------------chH--------------HHHHHHHHHHHHhCCCCcEEEeccccCCCCHH
Confidence 211 100 24678999999999999999999999999998
Q ss_pred HHHHH-HHHHHHHHHh--CCCEEEEEecCCch
Q 006505 215 SALQI-IDMLKVMAET--RGRTVILSIHQPGF 243 (643)
Q Consensus 215 ~~~~i-~~~L~~l~~~--~g~tvi~~~H~~~~ 243 (643)
....+ ...++++++. .+.++|++||+++.
T Consensus 125 ~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l 156 (213)
T cd03281 125 DGAGLLIATIEHLLKRGPECPRVIVSTHFHEL 156 (213)
T ss_pred HHHHHHHHHHHHHHhcCCCCcEEEEEcChHHH
Confidence 65555 5688888763 13589999999863
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.6e-14 Score=124.08 Aligned_cols=74 Identities=18% Similarity=0.135 Sum_probs=62.7
Q ss_pred cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEEEEccCCCCCCCCCHH
Q 006505 58 RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGYVTQRDTLFPLLTVE 134 (643)
Q Consensus 58 ~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~ 134 (643)
+.+|+++++++++||+++|+||||||||||++++. +|++.++|.++.. ...++..+|++|+ ++.. |++
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~~-ti~ 72 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLEI-RLR 72 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cchh-hHH
Confidence 56899999999999999999999999999999986 7899999988743 3455667888887 5544 999
Q ss_pred HHHHHH
Q 006505 135 ETLMFS 140 (643)
Q Consensus 135 E~l~~~ 140 (643)
|||.++
T Consensus 73 ~Ni~~~ 78 (107)
T cd00820 73 LNIFLI 78 (107)
T ss_pred hhceee
Confidence 999873
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >TIGR01291 nodJ ABC-2 type transporter, NodJ family | Back alignment and domain information |
|---|
Probab=99.45 E-value=4e-11 Score=123.31 Aligned_cols=236 Identities=13% Similarity=0.039 Sum_probs=162.5
Q ss_pred HHHHHHHHHHHhhcC-hHHHHHHHHHHHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHHHH----H-HhHH-HHHH
Q 006505 367 TIILTHRFSKNIFRT-KELFACRTIQMLISGIVLGSIFHNVKDDLTGTEEKVGLFAFILTFLLSC----T-TEAL-PIFL 439 (643)
Q Consensus 367 ~~~l~~R~~~~~~Rd-~~~~~~r~~~~i~~~li~G~~f~~l~~~~~~~~~r~g~lf~~~~~~~~~----~-~~~~-~~f~ 439 (643)
...+++|+++..+|+ |..+...+++.++.-+++|..+-....+..| .+.. -|+......++ + .... ..+.
T Consensus 7 ~~~~~~R~~~~~~r~~~~~~~~~~~~P~~~l~~fg~~~~~~~~~~~g-~~y~--~f~~pg~l~~~~~~~~~~~~~~~~~~ 83 (253)
T TIGR01291 7 WAAVWRRNALAWKKVAAASVLGNLADPLIYLFGLGVGLGKMVGSVDG-VSYA--AFLAAGMVATSAMTASTFETIYATFA 83 (253)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhccccCC-CCHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345779999999999 9999999999999999999887543221122 1211 22222221111 1 1111 1222
Q ss_pred H--hhHHHHHHhCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006505 440 Q--EREILMKETSCGSYRVSSYAIANGLVYLPFLLILAILFSVPLYWIVGLNPNLMAFFHFLLLIWLILYTANSVVVCFS 517 (643)
Q Consensus 440 ~--er~v~~rE~~~~~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~~~~~l~~~~~~s~~~~i~ 517 (643)
. |+..+.|-+..-. ++..+.+||++.+.-..++..++...+.++ .|..+. ...+..+..+++..++..++|.++|
T Consensus 84 ~~r~~g~~~~l~~~Pv-~~~~~~~g~~~~~~~~~~~~~~ii~~~~~~-~g~~~~-~~~l~~~~~~ll~~l~~~~lg~~~a 160 (253)
T TIGR01291 84 RMRVTRTWEAMLYTPI-TVGDIVLGEVAWAATKASLAGTIIGVVTAT-LGYIEW-WSLIYILPVIALTGLAFASLSMLVA 160 (253)
T ss_pred HHHHcccHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhchh-hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 3333333333332 778999999999988888877766655544 344433 3344444555667777789999999
Q ss_pred hccCCHHHHHHHHHHHHHHHHHhhccccCCCCccchhhhhhccChhHHHHHHHHHHhhCCCCccccccCCccccchHHHH
Q 006505 518 ALVPNFIVGNSVISGVMGSFFLFSGYFISKHGIPDYWIFMHYISLFKYPFEQFLINEFSDSDKCLQYIFGKCVVKGEDVL 597 (643)
Q Consensus 518 ~~~~~~~~a~~~~~~~~~~~~lfsGf~i~~~~ip~~~~Wl~yiSp~~y~~eal~~nef~~~~~C~~~~~~~c~~~G~~~L 597 (643)
++.++.+.+..+...+..|++.+||.+.|.+.+|.|++|+.++||+.|+.|++-..-+++.
T Consensus 161 ~~~~~~~~~~~i~~~i~~pl~flSg~~~P~~~mP~~lq~i~~~nPlt~~v~~~R~~~~g~~------------------- 221 (253)
T TIGR01291 161 ALAPSYAYFAFYQSLVITPMLFLSGVVFPVFQLNDVIQGMTHFLPLAHSIDDIRPVMLGGP------------------- 221 (253)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHhcCHHhChHHHHHHHHHCcHHHHHHHHHHHHhCCC-------------------
Confidence 9999999998888999999999999999999999999999999999999999644433211
Q ss_pred HhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 006505 598 REAGYEEESSWRNLVIMVGFILIYRFISYVILRFRC 633 (643)
Q Consensus 598 ~~~g~~~~~~w~~~~il~~~~~~~~~l~~~~L~~~~ 633 (643)
..+.|.+++++.++.+++..++...+|+|.
T Consensus 222 ------~~~~~~~~~~l~~~~vv~~~la~~~fr~~~ 251 (253)
T TIGR01291 222 ------GTQVGLHLGALCLYAVVPFFISAALLRRRL 251 (253)
T ss_pred ------cHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 112356788888888888888777766543
|
Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins. |
| >TIGR01069 mutS2 MutS2 family protein | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.6e-13 Score=160.27 Aligned_cols=136 Identities=22% Similarity=0.330 Sum_probs=95.8
Q ss_pred cceeec-----eEEEEecC-eEEEEECCCCCCHHHHHHHHhcC-CCCCccEEEECCCcCCchhhcccEEEEccCCC-CCC
Q 006505 58 RRVLDG-----VSCKAKPW-EILAIVGPSGAGKSSLLEILAGK-LTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDT-LFP 129 (643)
Q Consensus 58 ~~iL~~-----vs~~i~~G-e~~aIlG~nGaGKSTLL~~l~g~-~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~-l~~ 129 (643)
.+++++ +|+.+.+| ++++|.||||+|||||||+|+|. +.+..| .+||.... .++
T Consensus 303 hPll~~~~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G------------------~~Vpa~~~~~~~ 364 (771)
T TIGR01069 303 HPLLKEPKVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSG------------------IPIPANEHSEIP 364 (771)
T ss_pred CceecCCceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhC------------------CCccCCcccccc
Confidence 355544 78888888 99999999999999999999987 222222 14444321 111
Q ss_pred CCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 006505 130 LLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTS 209 (643)
Q Consensus 130 ~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPts 209 (643)
+.+.+. . ..+ .+ + .+ .+..+++|+|+++++.|++.+ .+|+++|+|||++
T Consensus 365 ---~~d~i~--~--~i~--~~---~---si---------------~~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~ 413 (771)
T TIGR01069 365 ---YFEEIF--A--DIG--DE---Q---SI---------------EQNLSTFSGHMKNISAILSKT-TENSLVLFDELGA 413 (771)
T ss_pred ---chhhee--e--ecC--hH---h---HH---------------hhhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCC
Confidence 111110 0 000 00 0 00 113468999999999998876 8999999999999
Q ss_pred CCCHHHHHHH-HHHHHHHHHhCCCEEEEEecCCch
Q 006505 210 GLDSTSALQI-IDMLKVMAETRGRTVILSIHQPGF 243 (643)
Q Consensus 210 gLD~~~~~~i-~~~L~~l~~~~g~tvi~~~H~~~~ 243 (643)
|+|+.....+ ..+++.+++ .|.++|++||+.+.
T Consensus 414 GtD~~eg~ala~aiLe~l~~-~g~~viitTH~~eL 447 (771)
T TIGR01069 414 GTDPDEGSALAISILEYLLK-QNAQVLITTHYKEL 447 (771)
T ss_pred CCCHHHHHHHHHHHHHHHHh-cCCEEEEECChHHH
Confidence 9999999999 577888876 59999999999764
|
Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function. |
| >TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.7e-11 Score=122.86 Aligned_cols=222 Identities=12% Similarity=0.068 Sum_probs=146.0
Q ss_pred hcChHHHHHHHHHHHHHHHHHHHHhccCCCChhhHHH-HHHHHHHHHHHHHHHHHhHHHHHHH--hhHHHHHHhCCCCCC
Q 006505 379 FRTKELFACRTIQMLISGIVLGSIFHNVKDDLTGTEE-KVGLFAFILTFLLSCTTEALPIFLQ--EREILMKETSCGSYR 455 (643)
Q Consensus 379 ~Rd~~~~~~r~~~~i~~~li~G~~f~~l~~~~~~~~~-r~g~lf~~~~~~~~~~~~~~~~f~~--er~v~~rE~~~~~Y~ 455 (643)
+|||..+..-+.+.+++-++.+.+|-+.. +.+..+. ..|.+-+...+. +.+..--.... |+..+.|=+..- .+
T Consensus 2 ~r~p~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~er~~G~l~rl~~~P-~~ 77 (232)
T TIGR00025 2 LRVGAQIILTMFIPITFMVGLNLLPGGSV-THNRGATFIPVLMALAAIST--AFTGQAIAVARDRRYGALKRLGATP-LP 77 (232)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhcCCcc-CCcchhHhhHHHHHHHHHHH--HHHHHHHHHHHHHHhCHHHHHhcCC-Cc
Confidence 69999999999999998888888775421 1112211 222221111111 11111112223 334555555444 47
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhccC---CHHHHHHHHHH
Q 006505 456 VSSYAIANGLVYLPFLLILAILFSVPLYWIVGLNPNLMAFFHFLLLIWLILYTANSVVVCFSALVP---NFIVGNSVISG 532 (643)
Q Consensus 456 ~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~~~~~l~~~~~~s~~~~i~~~~~---~~~~a~~~~~~ 532 (643)
+..|+++|.+..++..++..+++. +++++.|++.....+ ..++...+....+.+++.+++++++ +.+.+..+...
T Consensus 78 ~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~ 155 (232)
T TIGR00025 78 RLGILAGRSLAVVARVFLQTLILL-VIGFVLGFRFAGGAL-TALTLGAVIIALGTALFAALGLVAGGTLQAEIVLAVANL 155 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCcCCchH-HHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 899999999989898877765554 556778988654332 3333444555566667777777764 45555777888
Q ss_pred HHHHHHHhhccccCCCCccchhhhhhccChhHHHHHHHHHHhhCCCCccccccCCccccchHHHHHhcCCCCCChHHHHH
Q 006505 533 VMGSFFLFSGYFISKHGIPDYWIFMHYISLFKYPFEQFLINEFSDSDKCLQYIFGKCVVKGEDVLREAGYEEESSWRNLV 612 (643)
Q Consensus 533 ~~~~~~lfsGf~i~~~~ip~~~~Wl~yiSp~~y~~eal~~nef~~~~~C~~~~~~~c~~~G~~~L~~~g~~~~~~w~~~~ 612 (643)
...+++++||.+.|.+.+|.|++|+.+++|++|+.+++-..-.++. +....|.+++
T Consensus 156 ~~~p~~~lSG~~~P~~~mP~~lq~i~~~~P~t~~~~~~r~~~~~~~------------------------~~~~~~~~~~ 211 (232)
T TIGR00025 156 VWFIFALLSAGLVPLNLIPTWIKWFVRVQPSSYATEALRQAATVSV------------------------DTFGAVRDLV 211 (232)
T ss_pred HHHHHHHHhheeeecccccHHHHHHHHhCcHHHHHHHHHHHHcCCC------------------------ChhhHHHHHH
Confidence 8889999999999999999999999999999999998754332211 1223577888
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 006505 613 IMVGFILIYRFISYVILR 630 (643)
Q Consensus 613 il~~~~~~~~~l~~~~L~ 630 (643)
+++++.+++..++....|
T Consensus 212 ~l~~~~~v~~~la~~~~~ 229 (232)
T TIGR00025 212 VVLAFWVALAALAAIRLR 229 (232)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 888888887776666544
|
This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance. |
| >TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.9e-12 Score=126.67 Aligned_cols=151 Identities=15% Similarity=0.088 Sum_probs=124.0
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 006505 454 YRVSSYAIANGLVYLPFLLILAILFSVPLYWIVGLNPNLMAFFHFLLLIWLILYTANSVVVCFSALVPNFIVGNSVISGV 533 (643)
Q Consensus 454 Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~~~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~ 533 (643)
-+...++++|.+..++..+++++++..+.|++.|++.. +++.+++..++..++..+++.++++++++...+. ..+.
T Consensus 57 ~~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~~~~--~~~~~~l~~~l~~~~~~~lg~~l~~~~~~~~~~~--~~~~ 132 (208)
T TIGR03062 57 ARSWRIALAKLLPGGLIGVLQAIILYGVLILGLGLDPA--HPPATFGFAILTSLTFMAIIQFLVALFGNVGRFL--ALVL 132 (208)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC--CHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHH--HHHH
Confidence 34567799999999999999999999999999999864 4667777788888999999999999999765443 3344
Q ss_pred HHHHHHhhccccCCCCccchhhhhhccChhHHHHHHHHHHhhCCCCccccccCCccccchHHHHHhcCCCCCChHHHHHH
Q 006505 534 MGSFFLFSGYFISKHGIPDYWIFMHYISLFKYPFEQFLINEFSDSDKCLQYIFGKCVVKGEDVLREAGYEEESSWRNLVI 613 (643)
Q Consensus 534 ~~~~~lfsGf~i~~~~ip~~~~Wl~yiSp~~y~~eal~~nef~~~~~C~~~~~~~c~~~G~~~L~~~g~~~~~~w~~~~i 613 (643)
+.+.++++|.+.|.+.+|.|++|+.|++|++|+.+++-...+++. ..+.|.++++
T Consensus 133 ~~~~~~~sG~~~P~~~~P~~~~~i~~~~P~t~~~~~~r~~~~~~~-------------------------~~~~~~~~~~ 187 (208)
T TIGR03062 133 LVLQLGSSGGTFPIELLPAFFQAIHPFLPMTYSVNGLRQLISGGN-------------------------DGTLWQAVAV 187 (208)
T ss_pred HHHHHccCCCccchhhCHHHHHHhhhhCcHHHHHHHHHHHHhCCc-------------------------HHHHHHHHHH
Confidence 556777899999999999999999999999999999976665431 1235788999
Q ss_pred HHHHHHHHHHHHHHHHhhcc
Q 006505 614 MVGFILIYRFISYVILRFRC 633 (643)
Q Consensus 614 l~~~~~~~~~l~~~~L~~~~ 633 (643)
++++.+++.+++....|+|+
T Consensus 188 L~~~~~v~~~la~~~~~~~~ 207 (208)
T TIGR03062 188 LLLILVVFLALSLLSARRKR 207 (208)
T ss_pred HHHHHHHHHHHHHHHHhhhc
Confidence 99999999888888776554
|
This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057. |
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.6e-14 Score=146.16 Aligned_cols=166 Identities=27% Similarity=0.417 Sum_probs=120.4
Q ss_pred ecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEE----------------------EccCCC
Q 006505 69 KPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGY----------------------VTQRDT 126 (643)
Q Consensus 69 ~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~y----------------------v~Q~~~ 126 (643)
+||++.+++|.||-||||-|++++|..+|.-|.- +. +..|...++| =||.-.
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~--~~----pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd 171 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRY--DN----PPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVD 171 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCC--CC----CcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHH
Confidence 5899999999999999999999999999974431 11 0111111111 011100
Q ss_pred CCC---CCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEE
Q 006505 127 LFP---LLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLI 203 (643)
Q Consensus 127 l~~---~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~ill 203 (643)
.+| ..+|.+++. ....++..+++++.+.|++..++ .+..|||||-||.+||.+.+++.++.+
T Consensus 172 ~ipr~~k~~v~~~l~----------~~~~r~~~~~~~~~~~L~~~~~r-----e~~~lsggelqrfaia~~~vq~advyM 236 (592)
T KOG0063|consen 172 QIPRAVKGTVGSLLD----------RKDERDNKEEVCDQLDLNNLLDR-----EVEQLSGGELQRFAIAMVCVQKADVYM 236 (592)
T ss_pred HHHHHHHHHHHHHHH----------HHhhcccHHHHHHHHHHhhHHHh-----hhhhcccchhhhhhhhhhhhhhcceeE
Confidence 001 012322221 12223356778888888887755 456999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeC
Q 006505 204 LDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLAN 257 (643)
Q Consensus 204 lDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 257 (643)
+|||.+-||...+..-...++.+... ++=||++.||++. +--+.|-+.+|..
T Consensus 237 FDEpSsYLDVKQRLkaA~~IRsl~~p-~~YiIVVEHDLsV-LDylSDFiCcLYG 288 (592)
T KOG0063|consen 237 FDEPSSYLDVKQRLKAAITIRSLINP-DRYIIVVEHDLSV-LDYLSDFICCLYG 288 (592)
T ss_pred ecCCcccchHHHhhhHHHHHHHhhCC-CCeEEEEEeechH-HHhhhcceeEEec
Confidence 99999999999999999999999874 8899999999973 4446788888863
|
|
| >cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.43 E-value=9.3e-13 Score=132.35 Aligned_cols=142 Identities=22% Similarity=0.227 Sum_probs=92.6
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhc-CCCCCccEEEECCCcCCchhhcccEEEEccCCCCCCCCCHHH
Q 006505 57 VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAG-KLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTVEE 135 (643)
Q Consensus 57 ~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g-~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E 135 (643)
.+.+.+|+++.+++|++++|.||||+||||+++++++ ...+..|..... +...-.-+.+...-+..+|.+..+++
T Consensus 17 ~~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a-~~~~~~~~~~i~~~~~~~d~~~~~~S--- 92 (222)
T cd03287 17 KSFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPA-SSATLSIFDSVLTRMGASDSIQHGMS--- 92 (222)
T ss_pred CCEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEc-CceEEeccceEEEEecCccccccccc---
Confidence 3578999999999999999999999999999999999 556667775443 11110111111111221221111111
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Q 006505 136 TLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTS 215 (643)
Q Consensus 136 ~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~ 215 (643)
.| ..|-+|++-...-+++|+++|+|||.+|.|+..
T Consensus 93 --tF-------------------------------------------~~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d 127 (222)
T cd03287 93 --TF-------------------------------------------MVELSETSHILSNCTSRSLVILDELGRGTSTHD 127 (222)
T ss_pred --hH-------------------------------------------HHHHHHHHHHHHhCCCCeEEEEccCCCCCChhh
Confidence 01 123334444444456899999999999998777
Q ss_pred HHHH-HHHHHHHHHhCCCEEEEEecCCchHHHhhc
Q 006505 216 ALQI-IDMLKVMAETRGRTVILSIHQPGFRIVKMF 249 (643)
Q Consensus 216 ~~~i-~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~ 249 (643)
...+ ...++.+.+..+.++|++||+++ +.++.
T Consensus 128 ~~~i~~~il~~l~~~~~~~~i~~TH~~~--l~~~~ 160 (222)
T cd03287 128 GIAIAYATLHYLLEEKKCLVLFVTHYPS--LGEIL 160 (222)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEcccHH--HHHHH
Confidence 7765 56777777644889999999985 44444
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.1e-10 Score=119.88 Aligned_cols=236 Identities=13% Similarity=0.126 Sum_probs=161.2
Q ss_pred HHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhccC-CC------Ch---hhHHHHHHHHHHHHHHHHHHHHh
Q 006505 364 FKETIILTHRFSKNIFRTKELFACRTIQMLISGIVLGSIFHNV-KD------DL---TGTEEKVGLFAFILTFLLSCTTE 433 (643)
Q Consensus 364 ~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~~li~G~~f~~l-~~------~~---~~~~~r~g~lf~~~~~~~~~~~~ 433 (643)
+++++.+++|+++...|||..+..-+++.+++-+++|.+|-.. +. +. -...--.|++-+...+..+..
T Consensus 1 ~~~~~~l~~rel~~~~r~~~~~~~~ll~Pl~~l~~f~~~f~~~~~~~~~~~~~~~~~y~~fl~pGi~~~~~~~~~~~~-- 78 (253)
T TIGR03861 1 LICFNGIVLREALRFVQQRSRFLSALVRPLLWLLVFAAGFRAALGISIIEPYDTYITYEVYIVPGLCCMILLFNGMQS-- 78 (253)
T ss_pred ChHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHh--
Confidence 4678999999999999999999999999999999999998442 11 00 011122233222222222111
Q ss_pred HHH-HHHHhhHHHHHHhCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHH
Q 006505 434 ALP-IFLQEREILMKETSCGSYRVSSYAIANGLVYLPFLLILAILFSVPLYWIVGLNPNLMAFFHFLLLIWLILYTANSV 512 (643)
Q Consensus 434 ~~~-~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~~~~~l~~~~~~s~ 512 (643)
+.. ..-.|+..+.+=+... -+...+.+++++..+-..+++.+++..+.+. .|.+......+.....+++..++..++
T Consensus 79 ~~~~~~~r~~g~~~~l~~~p-~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~-~g~~~~~~~~l~~~~~~~l~~~~~~~l 156 (253)
T TIGR03861 79 SLSMVYDREMGSMRVLLTSP-LPRPFLLFCKLLASALISLLQVYAFLAIAAL-VGVQPPVWGYVSVLPALVLVAFMLGAL 156 (253)
T ss_pred hhHhHHhHhcCHHHHHhhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHHH
Confidence 111 1222333444444444 4777899999999988888877665555543 366555444444444556666778899
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHHHHHhhccccCCCCc---cchhhhhhccChhHHHHHHHHHHhhCCCCccccccCCcc
Q 006505 513 VVCFSALVPNFIVGNSVISGVMGSFFLFSGYFISKHGI---PDYWIFMHYISLFKYPFEQFLINEFSDSDKCLQYIFGKC 589 (643)
Q Consensus 513 ~~~i~~~~~~~~~a~~~~~~~~~~~~lfsGf~i~~~~i---p~~~~Wl~yiSp~~y~~eal~~nef~~~~~C~~~~~~~c 589 (643)
|.++|+++++.+.+..+.++++.+++..||.+.|.+.+ |.|++|+.++||+.|..|++=.- +.+.
T Consensus 157 gl~la~l~~~~~~~~~i~~~~~~~l~flSgi~~p~~~~~~~p~~l~~i~~~nPl~~~i~~~R~~-~~g~----------- 224 (253)
T TIGR03861 157 GLALSNLIRQLENFAGVMNFVIFPMFFLSSALYPLWKMQEASTWLYWICALNPFTHAVELVRFA-LYGQ----------- 224 (253)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHhhHhhhhhhcccccHHHHHHHHhCcHHHHHHHHHHH-HhCC-----------
Confidence 99999999999888888888888999999999998766 88999999999999999887422 1110
Q ss_pred ccchHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHhh
Q 006505 590 VVKGEDVLREAGYEEESSWRNLVIMVGFILIYRFISYVILRF 631 (643)
Q Consensus 590 ~~~G~~~L~~~g~~~~~~w~~~~il~~~~~~~~~l~~~~L~~ 631 (643)
..|..+++++++.+++..++....|+
T Consensus 225 ----------------~~~~~~~~~~~~~~v~~~~~~~~fr~ 250 (253)
T TIGR03861 225 ----------------LNLPALGWTLGATTLFTLLAFWGFDP 250 (253)
T ss_pred ----------------cchhHHHHHHHHHHHHHHHHHHHhhc
Confidence 02556677777777777776665543
|
Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis. |
| >PRK07721 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=99.41 E-value=7e-12 Score=137.45 Aligned_cols=174 Identities=17% Similarity=0.258 Sum_probs=116.2
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcC---C--------chhhcccEEEEccCC
Q 006505 57 VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI---D--------KAQFRKVSGYVTQRD 125 (643)
Q Consensus 57 ~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~---~--------~~~~~~~i~yv~Q~~ 125 (643)
+..+++++ +.+.+|+.++|+|+||+|||||+++|+|..+++.|.|.+.|+.- . ...+++.+.++.+.+
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~ 223 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSD 223 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCC
Confidence 35689999 99999999999999999999999999999999999999966543 2 123567788998654
Q ss_pred CCCCCCCHHHHHH--HHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHH-HHHhcCCCEE
Q 006505 126 TLFPLLTVEETLM--FSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIG-FDVIHDPKVL 202 (643)
Q Consensus 126 ~l~~~lTv~E~l~--~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia-~aL~~~p~il 202 (643)
. ++.+-.. +.+ -.+.|.+..-|-+ .. + ..-.++ |.+=| |++. +
T Consensus 224 ~-----~~~~r~~~~~~a------------~~iAEyfr~~g~~-Vl---l---~~Dslt-----r~A~A~rEis-----l 269 (438)
T PRK07721 224 Q-----PALMRIKGAYTA------------TAIAEYFRDQGLN-VM---L---MMDSVT-----RVAMAQREIG-----L 269 (438)
T ss_pred C-----CHHHHHHHHHHH------------HHHHHHHHHCCCc-EE---E---EEeChH-----HHHHHHHHHH-----H
Confidence 3 1211111 111 0111222222211 00 0 000111 00000 1110 1
Q ss_pred EEeCC--CCCCCHHHHHHHHHHHHHHHH-hCCC-----EEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhH
Q 006505 203 ILDEP--TSGLDSTSALQIIDMLKVMAE-TRGR-----TVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDL 268 (643)
Q Consensus 203 llDEP--tsgLD~~~~~~i~~~L~~l~~-~~g~-----tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 268 (643)
.+.|| |+|+|+.....+.++++++.+ +.|. ||++.+||++. .++|++..+.+|+++..++.++
T Consensus 270 ~~ge~P~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e---~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 270 AVGEPPTTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE---PIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred hcCCCCccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc---hhhhhEEEecCEEEEEeccHHH
Confidence 12343 679999999999999999874 3475 99999999973 7899999999999999998765
|
|
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=5e-13 Score=133.74 Aligned_cols=44 Identities=18% Similarity=0.292 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHHHH
Q 006505 185 ERRRVSIGFDVIHDPKVLILDEPT-----SGLDSTSALQIIDMLKVMAE 228 (643)
Q Consensus 185 erqRv~ia~aL~~~p~illlDEPt-----sgLD~~~~~~i~~~L~~l~~ 228 (643)
|++++.||++++.+|+++++|||| +|||+.+...+.+.++++++
T Consensus 157 ~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 157 EKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred HHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999 99999999999999999875
|
|
| >cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.3e-12 Score=133.47 Aligned_cols=176 Identities=19% Similarity=0.214 Sum_probs=106.8
Q ss_pred EEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCcc--EEEE--CCC-cCCchhhccc---EEEEccCCCCCCCC---CHH
Q 006505 66 CKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSG--STFV--NGS-PIDKAQFRKV---SGYVTQRDTLFPLL---TVE 134 (643)
Q Consensus 66 ~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G--~I~~--~g~-~~~~~~~~~~---i~yv~Q~~~l~~~l---Tv~ 134 (643)
..+.+||.++|+||+|+|||||++.|++......+ .+.+ -|+ ..+..++.+. +-.+.+-+. .+.. ..+
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~-~~~~~~~~~~ 89 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDE-PPERHVQVAE 89 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCC-CHHHHHHHHH
Confidence 46889999999999999999999999998776532 3221 222 1222222222 222333232 1110 000
Q ss_pred HHHHHHHHhcC-CCC----HHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHH--------HHHHHHHHHHhcCCCE
Q 006505 135 ETLMFSAKLRL-RLP----QAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGE--------RRRVSIGFDVIHDPKV 201 (643)
Q Consensus 135 E~l~~~~~~~~-~~~----~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGe--------rqRv~ia~aL~~~p~i 201 (643)
.-+..+..++. +.. -++. .+..+..++ ++......+|||+ +||+++|+++..+++|
T Consensus 90 ~~~~~a~~~~~~G~~vll~iDei-~r~a~a~~e----------v~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsI 158 (249)
T cd01128 90 MVLEKAKRLVEHGKDVVILLDSI-TRLARAYNT----------VVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSL 158 (249)
T ss_pred HHHHHHHHHHHCCCCEEEEEECH-HHhhhhhhh----------ccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCce
Confidence 11111111100 000 0000 011111111 2233456689999 9999999999999999
Q ss_pred EEEeCCCCCCCHHHHHH-HHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeE
Q 006505 202 LILDEPTSGLDSTSALQ-IIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSV 260 (643)
Q Consensus 202 lllDEPtsgLD~~~~~~-i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 260 (643)
.+| ||+.+|+.+... ++ +.++.. .+.|.|+.+|+.. ....+|.|.+|++|+.
T Consensus 159 t~l--~T~~~d~~~~~~~~i--~~~~~~-~~~~~ivls~~la--~~~~~paI~vl~s~sr 211 (249)
T cd01128 159 TII--ATALVDTGSRMDDVI--FEEFKG-TGNMELVLDRRLA--ERRIFPAIDILKSGTR 211 (249)
T ss_pred EEe--eeheecCCCcccchH--HHHHhc-CCCcEEEEchHHh--hCCCCCeEEEcCCCCc
Confidence 999 999999655543 54 455543 4789999999985 4689999999999987
|
It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain. |
| >TIGR00634 recN DNA repair protein RecN | Back alignment and domain information |
|---|
Probab=99.29 E-value=6e-12 Score=143.57 Aligned_cols=77 Identities=25% Similarity=0.376 Sum_probs=70.1
Q ss_pred CCCCHHHHHHHHHHHHHhcC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEE
Q 006505 179 RGISGGERRRVSIGFDVIHD----PKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILM 254 (643)
Q Consensus 179 ~~LSGGerqRv~ia~aL~~~----p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~ 254 (643)
+.+||||+||++||++++.. |+++++||||+|||+.++..+.+.|+++++ +++||++||+|. +...+|++++
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~--~~~vi~iTH~~~--~~~~ad~~~~ 514 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE--RHQVLCVTHLPQ--VAAHADAHFK 514 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEEChHH--HHHhcCeEEE
Confidence 46899999999999999985 699999999999999999999999999973 799999999985 4578999999
Q ss_pred EeCCe
Q 006505 255 LANGS 259 (643)
Q Consensus 255 L~~G~ 259 (643)
|++|.
T Consensus 515 l~k~~ 519 (563)
T TIGR00634 515 VEKEG 519 (563)
T ss_pred EEEcc
Confidence 98764
|
All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair. |
| >TIGR00611 recf recF protein | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.7e-11 Score=130.71 Aligned_cols=60 Identities=20% Similarity=0.346 Sum_probs=55.3
Q ss_pred CCCCHHHHHHHHHHHHHhc---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q 006505 179 RGISGGERRRVSIGFDVIH---------DPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPG 242 (643)
Q Consensus 179 ~~LSGGerqRv~ia~aL~~---------~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~ 242 (643)
..+|.||+|++.||..|+. +|+|+|||||+++||+..+..+++.|++. |.+|++|+|+++
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~----~~qv~it~~~~~ 342 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL----GVQVFVTAISLD 342 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc----CCEEEEEecChh
Confidence 3689999999999999999 99999999999999999999999999753 679999999975
|
All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK10869 recombination and repair protein; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.4e-11 Score=139.66 Aligned_cols=77 Identities=23% Similarity=0.421 Sum_probs=69.7
Q ss_pred CCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEE
Q 006505 179 RGISGGERRRVSIGFDVIH----DPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILM 254 (643)
Q Consensus 179 ~~LSGGerqRv~ia~aL~~----~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~ 254 (643)
+.+||||+||++||++++. +|+++++|||++|||..++..+.+.|+++++ +.+||++||+|. +..++|+.++
T Consensus 429 k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~--~~qvi~iTH~~~--~~~~ad~~~~ 504 (553)
T PRK10869 429 KVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE--STQVMCVTHLPQ--VAGCGHQHFF 504 (553)
T ss_pred hhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEecCHH--HHHhCCEEEE
Confidence 3589999999999999997 5899999999999999999999999999974 699999999985 5689999999
Q ss_pred EeCCe
Q 006505 255 LANGS 259 (643)
Q Consensus 255 L~~G~ 259 (643)
++++.
T Consensus 505 v~k~~ 509 (553)
T PRK10869 505 VSKET 509 (553)
T ss_pred Eeccc
Confidence 98753
|
|
| >PRK15066 inner membrane transport permease; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=5e-09 Score=107.94 Aligned_cols=241 Identities=12% Similarity=0.134 Sum_probs=151.8
Q ss_pred HHHHHHHHHHHHHHhhcChHH-HHHHHHHHHHHHHHHHHHhccCCCChhhH----HHHHHHHHHHHHHHHHHHHhHHHHH
Q 006505 364 FKETIILTHRFSKNIFRTKEL-FACRTIQMLISGIVLGSIFHNVKDDLTGT----EEKVGLFAFILTFLLSCTTEALPIF 438 (643)
Q Consensus 364 ~~Q~~~l~~R~~~~~~Rd~~~-~~~r~~~~i~~~li~G~~f~~l~~~~~~~----~~r~g~lf~~~~~~~~~~~~~~~~f 438 (643)
|+-++.+.+|+.+...||+.. +..-+++.++..++.|.++-....+..+. .--.|++-+....... ......+
T Consensus 7 ~~~~~~l~~re~~~~~r~~~~~ll~pli~~~~~~~vfg~~~~~~~~~~~~~~y~~fl~pGll~~~~~~~~~--~~~~~~i 84 (257)
T PRK15066 7 WIALKTIVRKEIRRFLRIWVQTLVPPVITMTLYFLIFGNLIGSRIGEMGGFSYMQFIVPGLIMMSVITNSY--SNVASSF 84 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccccCCCCCCcHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 677889999999999999854 44555566666677776652210111111 1111322222221111 1111223
Q ss_pred HHhhHH-HHHHhCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006505 439 LQEREI-LMKETSCGSYRVSSYAIANGLVYLPFLLILAILFSVPLYWIVGLNPNLMAFFHFLLLIWLILYTANSVVVCFS 517 (643)
Q Consensus 439 ~~er~v-~~rE~~~~~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~~~~~l~~~~~~s~~~~i~ 517 (643)
..+|.. ..++...---++..+.+++++...-..++..++..++.+...|.+... ...++..+++........|.++|
T Consensus 85 ~~~~~~~~~~~l~vtp~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~~~--~~~~l~~~ll~~~~f~~~gl~~a 162 (257)
T PRK15066 85 FSAKFQRNIEELLVSPVPNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQVHH--WGIVLLTVLLTAILFSLGGLINA 162 (257)
T ss_pred HHHHHhhhHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 333311 012212223577889999999887777766666555555544666432 23333333343444445588888
Q ss_pred hccCCHHHHHHHHHHHHHHHHHhhccccCCCCccchhhhhhccChhHHHHHHHHHHhhCCCCccccccCCccccchHHHH
Q 006505 518 ALVPNFIVGNSVISGVMGSFFLFSGYFISKHGIPDYWIFMHYISLFKYPFEQFLINEFSDSDKCLQYIFGKCVVKGEDVL 597 (643)
Q Consensus 518 ~~~~~~~~a~~~~~~~~~~~~lfsGf~i~~~~ip~~~~Wl~yiSp~~y~~eal~~nef~~~~~C~~~~~~~c~~~G~~~L 597 (643)
.+.++.+....+.+.++.+++..||.+.|.+++|.|++|+.++||+.|..|++=..-++
T Consensus 163 ~~~~~~~~~~~i~~~~~~pl~flSgi~~p~~~lP~~l~~i~~~nPlt~~v~~~R~~~~g--------------------- 221 (257)
T PRK15066 163 VFAKSFDDISIIPTFVLTPLTYLGGVFYSISLLPPFWQGVSKLNPIVYMVNAFRYGFLG--------------------- 221 (257)
T ss_pred HHHccHHHHHHHHHHHHHHHHHHcchhccHHhChHHHHHHHHHCcHHHHHHHHHHHHcC---------------------
Confidence 88999888888889999999999999999999999999999999999999987432221
Q ss_pred HhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 006505 598 REAGYEEESSWRNLVIMVGFILIYRFISYVILRFRC 633 (643)
Q Consensus 598 ~~~g~~~~~~w~~~~il~~~~~~~~~l~~~~L~~~~ 633 (643)
......|.++++++++.+++..++....|+++
T Consensus 222 ----~~~~~~~~~l~~l~~~~~v~~~la~~~~~r~~ 253 (257)
T PRK15066 222 ----ISDVPLWLAFAVLLVFIVVLYLLAWYLLERGR 253 (257)
T ss_pred ----CCCccHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 11123578889999999888888777765443
|
|
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.2e-11 Score=141.54 Aligned_cols=79 Identities=23% Similarity=0.383 Sum_probs=70.2
Q ss_pred cCCCCCHHHHHHHHHHHHHh----------cCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHH
Q 006505 177 RVRGISGGERRRVSIGFDVI----------HDPKVLILDEPT-SGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRI 245 (643)
Q Consensus 177 ~~~~LSGGerqRv~ia~aL~----------~~p~illlDEPt-sgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i 245 (643)
.+..||||||||++||++|+ .+|++++||||| ++||+.+...+.+.|+++ + |.|||++||++. .
T Consensus 465 ~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~-~~~iiiish~~~--~ 539 (562)
T PHA02562 465 SYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--K-DTNVFVISHKDH--D 539 (562)
T ss_pred ChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--C-CCeEEEEECchh--c
Confidence 56789999999999999887 599999999998 789999999999999998 3 899999999975 4
Q ss_pred HhhcCEEEEEeC-CeE
Q 006505 246 VKMFNSILMLAN-GSV 260 (643)
Q Consensus 246 ~~~~D~v~~L~~-G~i 260 (643)
.+.+|++++|.+ |+.
T Consensus 540 ~~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 540 PQKFDRHLKMEKVGRF 555 (562)
T ss_pred hhhhhcEEEEEEECCe
Confidence 678999999986 554
|
|
| >TIGR00618 sbcc exonuclease SbcC | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.6e-11 Score=149.76 Aligned_cols=82 Identities=23% Similarity=0.287 Sum_probs=75.2
Q ss_pred CCcCCCCCHHHHHHHHHHHHHhc----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchH
Q 006505 175 DDRVRGISGGERRRVSIGFDVIH----------DPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFR 244 (643)
Q Consensus 175 ~~~~~~LSGGerqRv~ia~aL~~----------~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~ 244 (643)
++.+++|||||++||+||++|+. +|++||+||||+|||+.+...+++.|+++.+ .|++|++|||+++.
T Consensus 945 ~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~-~g~~i~iisH~~~~- 1022 (1042)
T TIGR00618 945 VRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIRE-GSKMIGIISHVPEF- 1022 (1042)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCcHHH-
Confidence 45788999999999999999985 7999999999999999999999999999987 59999999999974
Q ss_pred HHhhcCEEEEEeCC
Q 006505 245 IVKMFNSILMLANG 258 (643)
Q Consensus 245 i~~~~D~v~~L~~G 258 (643)
...++|+|.|++.|
T Consensus 1023 ~~~~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1023 RERIPHRILVKKTN 1036 (1042)
T ss_pred HHhhCCEEEEEECC
Confidence 78899999999754
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.25 E-value=9.3e-12 Score=146.01 Aligned_cols=83 Identities=22% Similarity=0.270 Sum_probs=65.2
Q ss_pred cCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEE
Q 006505 177 RVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIID-MLKVMAETRGRTVILSIHQPGFRIVKMFNSILML 255 (643)
Q Consensus 177 ~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~-~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L 255 (643)
..+++|+|++|++.|++++ ++|+++|+|||++|+|+.....+.. +++.+.+ .|.++|++||+++. ....+|+..++
T Consensus 387 ~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~-~~~~vIitTH~~el-~~~~~~~~~v~ 463 (782)
T PRK00409 387 SLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRK-RGAKIIATTHYKEL-KALMYNREGVE 463 (782)
T ss_pred chhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHH-CCCEEEEECChHHH-HHHHhcCCCeE
Confidence 4568999999999999988 8999999999999999999988865 6777766 48999999999753 33344544433
Q ss_pred eCCeEEEe
Q 006505 256 ANGSVLHH 263 (643)
Q Consensus 256 ~~G~iv~~ 263 (643)
++.+.+.
T Consensus 464 -~~~~~~d 470 (782)
T PRK00409 464 -NASVEFD 470 (782)
T ss_pred -EEEEEEe
Confidence 5566553
|
|
| >PRK08533 flagellar accessory protein FlaH; Reviewed | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.1e-11 Score=120.74 Aligned_cols=150 Identities=17% Similarity=0.199 Sum_probs=91.2
Q ss_pred EEecCeEEEEECCCCCCHHHH-HHHHhcCCCCCccEEEECCCcCCchhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcC
Q 006505 67 KAKPWEILAIVGPSGAGKSSL-LEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRL 145 (643)
Q Consensus 67 ~i~~Ge~~aIlG~nGaGKSTL-L~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~ 145 (643)
-+++|++++|.|+|||||||| ++.+++..++... +.|+..+ .|..+.+.....+..
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~-----------------~~yi~~e------~~~~~~~~~~~~~g~ 76 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYS-----------------VSYVSTQ------LTTTEFIKQMMSLGY 76 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCc-----------------EEEEeCC------CCHHHHHHHHHHhCC
Confidence 489999999999999999999 7999987654322 2344321 244444444332221
Q ss_pred CCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCC----CHHHHH
Q 006505 146 RLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVI----HDPKVLILDEPTSGL----DSTSAL 217 (643)
Q Consensus 146 ~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~----~~p~illlDEPtsgL----D~~~~~ 217 (643)
. - ++.... +.-... +.. ..+|+++.++-.+.+.+- .+|+++++||||+++ |+....
T Consensus 77 ~--~-------~~~~~~-~~l~~~-----~~~-~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~ 140 (230)
T PRK08533 77 D--I-------NKKLIS-GKLLYI-----PVY-PLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVN 140 (230)
T ss_pred c--h-------HHHhhc-CcEEEE-----Eec-ccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHH
Confidence 1 0 011000 100000 111 235666655544444332 369999999999999 888888
Q ss_pred HHHHHHHHHHHhCCCEEEEEecCCchH------HHhhcCEEEEEe
Q 006505 218 QIIDMLKVMAETRGRTVILSIHQPGFR------IVKMFNSILMLA 256 (643)
Q Consensus 218 ~i~~~L~~l~~~~g~tvi~~~H~~~~~------i~~~~D~v~~L~ 256 (643)
++.+.++++++. |.|+++++|+.... +..++|-|+.|+
T Consensus 141 ~l~~~l~~l~~~-g~tvi~t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 141 DLMAFFKRISSL-NKVIILTANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred HHHHHHHHHHhC-CCEEEEEecccccccccceeEEEeeeEEEEEE
Confidence 999999999875 88877766543210 123457777775
|
|
| >PRK14079 recF recombination protein F; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.7e-10 Score=122.44 Aligned_cols=76 Identities=20% Similarity=0.305 Sum_probs=62.5
Q ss_pred CCCCHHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhc
Q 006505 179 RGISGGERRRVSIGFDVI---------HDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMF 249 (643)
Q Consensus 179 ~~LSGGerqRv~ia~aL~---------~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~ 249 (643)
.-+|+||+|++.+|..|+ .+|++++||||+++||...+..+.+.|.+. ..++|-+++.+ +.+
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~----~q~~it~t~~~-----~~~ 332 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASL----PQAIVAGTEAP-----PGA 332 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcC----CcEEEEcCCCC-----CCC
Confidence 358999999999999998 899999999999999999999999888643 23455555433 578
Q ss_pred CEEEEEeCCeEEEe
Q 006505 250 NSILMLANGSVLHH 263 (643)
Q Consensus 250 D~v~~L~~G~iv~~ 263 (643)
|+++.+.+|++.-.
T Consensus 333 ~~~~~~~~~~~~~~ 346 (349)
T PRK14079 333 ALTLRIEAGVFTPE 346 (349)
T ss_pred ceEEEEeccEecCC
Confidence 99999999887543
|
|
| >cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.8e-11 Score=119.66 Aligned_cols=136 Identities=21% Similarity=0.237 Sum_probs=89.8
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCC-ccEEEECCCcCCchhhcccEEEEccCCCCCCCCCHHH
Q 006505 57 VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQ-SGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTVEE 135 (643)
Q Consensus 57 ~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~-~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E 135 (643)
.+.+-+|+++..++|++++|.||||+||||+++++++..--. . |..+..+. ..++++ +.++..+...|
T Consensus 16 ~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~------G~~vpa~~--~~i~~~---~~i~~~~~~~d 84 (218)
T cd03286 16 SSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQM------GMDVPAKS--MRLSLV---DRIFTRIGARD 84 (218)
T ss_pred CCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHc------CCccCccc--cEeccc---cEEEEecCccc
Confidence 467899999999999999999999999999999998863211 1 11111110 011111 12222222222
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCC--HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Q 006505 136 TLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGIS--GGERRRVSIGFDVIHDPKVLILDEPTSGLDS 213 (643)
Q Consensus 136 ~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LS--GGerqRv~ia~aL~~~p~illlDEPtsgLD~ 213 (643)
++.. ++| ..|-+|++-....+++|+++++|||.+|+|+
T Consensus 85 ~~~~----------------------------------------~~StF~~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~ 124 (218)
T cd03286 85 DIMK----------------------------------------GESTFMVELSETANILRHATPDSLVILDELGRGTST 124 (218)
T ss_pred cccc----------------------------------------CcchHHHHHHHHHHHHHhCCCCeEEEEecccCCCCc
Confidence 2210 111 1234444444445678999999999999999
Q ss_pred HHHHHHHHH-HHHHHHhCCCEEEEEecCCch
Q 006505 214 TSALQIIDM-LKVMAETRGRTVILSIHQPGF 243 (643)
Q Consensus 214 ~~~~~i~~~-L~~l~~~~g~tvi~~~H~~~~ 243 (643)
.....+... ++.+.+..+.++|++||+++.
T Consensus 125 ~dg~~la~ail~~L~~~~~~~~i~~TH~~el 155 (218)
T cd03286 125 HDGYAIAHAVLEYLVKKVKCLTLFSTHYHSL 155 (218)
T ss_pred hHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 999988888 777776448999999999863
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.4e-11 Score=123.72 Aligned_cols=64 Identities=27% Similarity=0.497 Sum_probs=54.4
Q ss_pred CCCCCHHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q 006505 178 VRGISGGERRRVSIGFDVIHDP---KVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPG 242 (643)
Q Consensus 178 ~~~LSGGerqRv~ia~aL~~~p---~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~ 242 (643)
...+|.|+||.+.++..+...+ .++++|||-++|+|..+..+++.|++.++ .+.-||+|||.|.
T Consensus 234 ~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~-~~~QviitTHSp~ 300 (303)
T PF13304_consen 234 LSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSK-KNIQVIITTHSPF 300 (303)
T ss_dssp GS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGG-GSSEEEEEES-GG
T ss_pred eccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCc-cCCEEEEeCccch
Confidence 4567999999999998888766 89999999999999999999999988876 4889999999985
|
|
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.9e-10 Score=129.81 Aligned_cols=137 Identities=23% Similarity=0.405 Sum_probs=103.8
Q ss_pred CCCCCHHHHHHHHHHhcCCCCH-HHHHHHHHHH------HHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCC-
Q 006505 128 FPLLTVEETLMFSAKLRLRLPQ-AQLRARVKSL------VKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDP- 199 (643)
Q Consensus 128 ~~~lTv~E~l~~~~~~~~~~~~-~~~~~~v~~~------l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p- 199 (643)
+..+++.|.+.|...+.+...+ .-.++.+.++ |..+||.-.. .++...+|||||.||+-+|..+-++=
T Consensus 426 ~~~msi~~~~~f~~~l~l~~~~~~ia~~ilkei~~RL~fL~~VGL~YLt----L~R~a~TLSGGEaQRIRLAtqiGS~Lt 501 (935)
T COG0178 426 ISEMSIADALEFFENLKLSEKEKKIAEPILKEIKERLGFLVDVGLGYLT----LSRSAGTLSGGEAQRIRLATQIGSGLT 501 (935)
T ss_pred HhhccHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHcCcCccc----ccccCCCcChhHHHHHHHHHHhcccce
Confidence 3456788888887666532211 1111222232 3334654321 15567899999999999999997763
Q ss_pred -CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEE------eCCeEEEecChhHHHH
Q 006505 200 -KVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILML------ANGSVLHHGTVDLLSV 271 (643)
Q Consensus 200 -~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~~ 271 (643)
=+++||||+-||-+..-.++++.|+++.+ .|-|+|++.||+ +....+|+|+=| +.|+|++.|+++++.+
T Consensus 502 GVlYVLDEPSIGLHqrDn~rLi~tL~~LRD-lGNTviVVEHDe--dti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~ 577 (935)
T COG0178 502 GVLYVLDEPSIGLHQRDNERLIETLKRLRD-LGNTVIVVEHDE--DTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLA 577 (935)
T ss_pred eeEEEecCCccCCChhhHHHHHHHHHHHHh-cCCeEEEEecCH--HHHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHh
Confidence 36899999999999999999999999987 499999999997 478999999987 4689999999999864
|
|
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.5e-10 Score=112.83 Aligned_cols=81 Identities=21% Similarity=0.235 Sum_probs=66.3
Q ss_pred CCcCCCCCHHHHH------HHHHHHHHhcCCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHHhCCCEEEEEecCCch--
Q 006505 175 DDRVRGISGGERR------RVSIGFDVIHDPKVLILDEPTSGLD---STSALQIIDMLKVMAETRGRTVILSIHQPGF-- 243 (643)
Q Consensus 175 ~~~~~~LSGGerq------Rv~ia~aL~~~p~illlDEPtsgLD---~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~-- 243 (643)
+..+..+|+|++| +.........+|+++++|||++.+| ......+.+.++.+++. |.|+|+++|+...
T Consensus 66 d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~-g~tvi~v~~~~~~~~ 144 (187)
T cd01124 66 DADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRF-GVTTLLTSEQSGLEG 144 (187)
T ss_pred ecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHC-CCEEEEEeccccCCC
Confidence 4466789999998 4444455667999999999999999 88888889999998874 9999999998753
Q ss_pred ------HHHhhcCEEEEEe
Q 006505 244 ------RIVKMFNSILMLA 256 (643)
Q Consensus 244 ------~i~~~~D~v~~L~ 256 (643)
.+..++|.++.|+
T Consensus 145 ~~~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 145 TGFGGGDVEYLVDGVIRLR 163 (187)
T ss_pred cccCcCceeEeeeEEEEEE
Confidence 1567899999987
|
A related protein is found in archaea. |
| >TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 | Back alignment and domain information |
|---|
Probab=99.17 E-value=7.2e-11 Score=124.87 Aligned_cols=141 Identities=13% Similarity=0.155 Sum_probs=97.8
Q ss_pred eEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhh--cccEEEEccCCC-CCCCCCHHHHHHHH
Q 006505 64 VSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQF--RKVSGYVTQRDT-LFPLLTVEETLMFS 140 (643)
Q Consensus 64 vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~--~~~i~yv~Q~~~-l~~~lTv~E~l~~~ 140 (643)
+++.+++|+.++|.||+|||||||+++|++..++..|.+.+++.. +... +..+.++.+... -....|..
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~--El~~~~~~~~~l~~~~~~~~~~~~~~~------ 208 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTR--EIFLPHPNYVHLFYSKGGQGLAKVTPK------ 208 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCcc--ccCCCCCCEEEEEecCCCCCcCccCHH------
Confidence 567888999999999999999999999999999988888885321 1111 122332222100 00011111
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH
Q 006505 141 AKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQII 220 (643)
Q Consensus 141 ~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~ 220 (643)
-.+..+|-.+|+++++|||.+ .+..
T Consensus 209 ------------------------------------------------~~l~~~Lr~~pd~ii~gE~r~-------~e~~ 233 (308)
T TIGR02788 209 ------------------------------------------------DLLQSCLRMRPDRIILGELRG-------DEAF 233 (308)
T ss_pred ------------------------------------------------HHHHHHhcCCCCeEEEeccCC-------HHHH
Confidence 123445677999999999996 3456
Q ss_pred HHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 221 DMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 221 ~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
+.++.+.. .+.+++.|+|..+ ..+..||+..|..|++...|.+.+..
T Consensus 234 ~~l~a~~~-g~~~~i~T~Ha~~--~~~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 234 DFIRAVNT-GHPGSITTLHAGS--PEEAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred HHHHHHhc-CCCeEEEEEeCCC--HHHHHHHHHHHhhccccccCCCHHHH
Confidence 67777653 2346799999987 46779999999999988888777665
|
The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA. |
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.7e-11 Score=118.76 Aligned_cols=79 Identities=16% Similarity=0.234 Sum_probs=64.5
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCC--CCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEE
Q 006505 178 VRGISGGERRRVSIGFDVIHDPKVLILDEP--TSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILML 255 (643)
Q Consensus 178 ~~~LSGGerqRv~ia~aL~~~p~illlDEP--tsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L 255 (643)
...+||+++.+..+++..+.+|+++++||| +.++| ..+.+.+.++.+ .|+++|+++|+. .+...+|++..+
T Consensus 76 ~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~----~~~~~~l~~~~~-~~~~~i~v~h~~--~~~~~~~~i~~~ 148 (174)
T PRK13695 76 VVNLEDLERIGIPALERALEEADVIIIDEIGKMELKS----PKFVKAVEEVLD-SEKPVIATLHRR--SVHPFVQEIKSR 148 (174)
T ss_pred EEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhh----HHHHHHHHHHHh-CCCeEEEEECch--hhHHHHHHHhcc
Confidence 456999999999999999999999999995 44444 345666666664 589999999994 366789999999
Q ss_pred eCCeEEEe
Q 006505 256 ANGSVLHH 263 (643)
Q Consensus 256 ~~G~iv~~ 263 (643)
.+|++.+.
T Consensus 149 ~~~~i~~~ 156 (174)
T PRK13695 149 PGGRVYEL 156 (174)
T ss_pred CCcEEEEE
Confidence 99998765
|
|
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.1e-10 Score=108.13 Aligned_cols=129 Identities=19% Similarity=0.264 Sum_probs=78.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHH
Q 006505 73 ILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQL 152 (643)
Q Consensus 73 ~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~ 152 (643)
+++|.||||+||||+++.+++...+..|.|.+-+.+..... ..+... ...
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~-------------------~~~~~~---~~~-------- 50 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEE-------------------LTERLI---GES-------- 50 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHH-------------------HHHHHh---hhh--------
Confidence 47899999999999999999987665555544333221111 111100 000
Q ss_pred HHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC----------CCCHHHHHHHHHH
Q 006505 153 RARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTS----------GLDSTSALQIIDM 222 (643)
Q Consensus 153 ~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPts----------gLD~~~~~~i~~~ 222 (643)
.....+...+ -.......+.++.++...+.+...+|+++++|||++ +.|......+.++
T Consensus 51 ---~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l 119 (165)
T cd01120 51 ---LKGALDNLII--------VFATADDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELREL 119 (165)
T ss_pred ---hccccccEEE--------EEcCCCCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 0000000000 011222345666677888888999999999999994 4555555666666
Q ss_pred HHHHHHhCCCEEEEEecCCch
Q 006505 223 LKVMAETRGRTVILSIHQPGF 243 (643)
Q Consensus 223 L~~l~~~~g~tvi~~~H~~~~ 243 (643)
+... ++.+.|+|+++|.++.
T Consensus 120 ~~~~-~~~~~~vv~~~~~~~~ 139 (165)
T cd01120 120 LERA-RKGGVTVIFTLQVPSG 139 (165)
T ss_pred HHHH-hcCCceEEEEEecCCc
Confidence 5554 4469999999998864
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >PRK13830 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.1e-09 Score=129.95 Aligned_cols=69 Identities=25% Similarity=0.270 Sum_probs=60.4
Q ss_pred hcCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHH---------hhcCEEEEEeCCeEEEecC
Q 006505 196 IHDPKVLILDEPTSGL-DSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIV---------KMFNSILMLANGSVLHHGT 265 (643)
Q Consensus 196 ~~~p~illlDEPtsgL-D~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~---------~~~D~v~~L~~G~iv~~G~ 265 (643)
..+|+++++|||+.+| |+..+..+.+.++++.+. |.+++++||+++. +. +.||.+++|.+|++...|.
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~-~~~vil~Tq~~~d-~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~ 727 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKA-NCAVVLATQSISD-AERSGIIDVLKESCPTKICLPNGAAREPGT 727 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHH-HhcCchHHHHHhcCCeEEECCCccccccch
Confidence 5799999999999999 799999999999999875 8999999999974 43 6899999999999876664
Q ss_pred h
Q 006505 266 V 266 (643)
Q Consensus 266 ~ 266 (643)
.
T Consensus 728 ~ 728 (818)
T PRK13830 728 R 728 (818)
T ss_pred H
Confidence 3
|
|
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.5e-10 Score=137.45 Aligned_cols=79 Identities=23% Similarity=0.348 Sum_probs=69.4
Q ss_pred CcCCCCCHHHHHH------HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhc
Q 006505 176 DRVRGISGGERRR------VSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMF 249 (643)
Q Consensus 176 ~~~~~LSGGerqR------v~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~ 249 (643)
.++..|||||+++ +++|++++.+|+++++||||+|||+..+..+.+.|+.+++. +.+||++||++. +...|
T Consensus 784 ~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~-~~~iiiith~~~--~~~~~ 860 (880)
T PRK03918 784 RPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRK-IPQVIIVSHDEE--LKDAA 860 (880)
T ss_pred CChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhc-CCEEEEEECCHH--HHHhC
Confidence 4678899999995 55556788999999999999999999999999999998764 789999999974 67899
Q ss_pred CEEEEEeC
Q 006505 250 NSILMLAN 257 (643)
Q Consensus 250 D~v~~L~~ 257 (643)
|++++|..
T Consensus 861 d~~~~l~~ 868 (880)
T PRK03918 861 DYVIRVSL 868 (880)
T ss_pred CeEEEEEe
Confidence 99999973
|
|
| >PRK10246 exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.9e-10 Score=137.13 Aligned_cols=80 Identities=25% Similarity=0.286 Sum_probs=70.8
Q ss_pred CcCCCCCHHHHHHHHHHHHHhc--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHh
Q 006505 176 DRVRGISGGERRRVSIGFDVIH--------DPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVK 247 (643)
Q Consensus 176 ~~~~~LSGGerqRv~ia~aL~~--------~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~ 247 (643)
+++++|||||+++++||++|+. +|++||+||||+|||+.+...+++.|..+++. |+||+++||.... ..+
T Consensus 945 r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~-g~~v~iisH~~~l-~~~ 1022 (1047)
T PRK10246 945 RDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNAS-GKTIGVISHVEAM-KER 1022 (1047)
T ss_pred CCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHC-CCEEEEEecHHHH-HHh
Confidence 5789999999999999999995 89999999999999999999999999999874 9999999998753 455
Q ss_pred hcCEEEEEeC
Q 006505 248 MFNSILMLAN 257 (643)
Q Consensus 248 ~~D~v~~L~~ 257 (643)
+-.+|.|-..
T Consensus 1023 i~~qi~V~k~ 1032 (1047)
T PRK10246 1023 IPVQIKVKKI 1032 (1047)
T ss_pred ccceEEEEEC
Confidence 6667777754
|
|
| >COG3910 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.6e-09 Score=101.99 Aligned_cols=82 Identities=22% Similarity=0.428 Sum_probs=61.8
Q ss_pred cCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhh-cCE
Q 006505 173 VGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKM-FNS 251 (643)
Q Consensus 173 vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~-~D~ 251 (643)
+|.+.....|.||-=---+.+. ..+.-+++||||-++|.+.-+.++...|++++++ |.-+|+.||.|= +..+ --.
T Consensus 122 ~~~~sLh~~SHGEsf~~i~~~r-f~~~GiYiLDEPEa~LSp~RQlella~l~~la~s-GaQ~IiATHSPi--LlAiP~A~ 197 (233)
T COG3910 122 YGGRSLHHMSHGESFLAIFHNR-FNGQGIYILDEPEAALSPSRQLELLAILRDLADS-GAQIIIATHSPI--LLAIPGAE 197 (233)
T ss_pred cCCcchhhhccchHHHHHHHHH-hccCceEEecCccccCCHHHHHHHHHHHHHHHhc-CCeEEEEecChh--heeCCCcE
Confidence 3445556789998654444433 4577899999999999999999999999999986 999999999984 2332 245
Q ss_pred EEEEeCC
Q 006505 252 ILMLANG 258 (643)
Q Consensus 252 v~~L~~G 258 (643)
|+-++.+
T Consensus 198 I~~~~~~ 204 (233)
T COG3910 198 IYEISES 204 (233)
T ss_pred EEEEecC
Confidence 5555544
|
|
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=8.2e-10 Score=133.11 Aligned_cols=79 Identities=23% Similarity=0.384 Sum_probs=68.3
Q ss_pred CcCCCCCHHHHHHHHH------HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhC-C-CEEEEEecCCchHHHh
Q 006505 176 DRVRGISGGERRRVSI------GFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETR-G-RTVILSIHQPGFRIVK 247 (643)
Q Consensus 176 ~~~~~LSGGerqRv~i------a~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~-g-~tvi~~~H~~~~~i~~ 247 (643)
..+..||||||+|++| |++++.+|++++|||||+|||+.....+.++++...+.. | .|||++||++. ..+
T Consensus 797 ~~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~--~~~ 874 (895)
T PRK01156 797 EGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRE--LLS 874 (895)
T ss_pred CccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchH--HHH
Confidence 3578999999999975 489999999999999999999999999999998654433 3 48999999985 458
Q ss_pred hcCEEEEEe
Q 006505 248 MFNSILMLA 256 (643)
Q Consensus 248 ~~D~v~~L~ 256 (643)
.||+++.+.
T Consensus 875 ~~d~ii~~~ 883 (895)
T PRK01156 875 VADVAYEVK 883 (895)
T ss_pred hcCeEEEEE
Confidence 999999997
|
|
| >PRK06793 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=99.01 E-value=8.2e-10 Score=120.43 Aligned_cols=156 Identities=19% Similarity=0.137 Sum_probs=112.1
Q ss_pred cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEccCCCCCCCCCHHHHH
Q 006505 58 RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTVEETL 137 (643)
Q Consensus 58 ~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l 137 (643)
..+++++ +.+.+||.++|+|+||+|||||+++|+|..+++.|.|.+.|+.. .+|+|.+
T Consensus 144 iraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg---------------------~ev~e~~ 201 (432)
T PRK06793 144 IKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERG---------------------REVKDFI 201 (432)
T ss_pred CEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCc---------------------ccHHHHH
Confidence 4578875 99999999999999999999999999999999888777666432 3566654
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHh-------cCCCEEEEeCCCCC
Q 006505 138 MFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVI-------HDPKVLILDEPTSG 210 (643)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~-------~~p~illlDEPtsg 210 (643)
..... .-|+.+ +.+ =....+-|.|+|+|++.+.+.+ .++-++++|+||+.
T Consensus 202 ~~~l~-------------------~~gl~~---tvv-v~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~ 258 (432)
T PRK06793 202 RKELG-------------------EEGMRK---SVV-VVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRF 258 (432)
T ss_pred HHHhh-------------------hcccce---eEE-EEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHH
Confidence 32111 111111 000 0234678999999999998887 78999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecCh
Q 006505 211 LDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTV 266 (643)
Q Consensus 211 LD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 266 (643)
.|+. .++-..+.+.... |.+..+.+|-+ .+.+-+ -...+|.+...+..
T Consensus 259 a~A~--reisl~~~e~p~~-G~~~~~~s~l~--~L~ERa---g~~~~GSiT~~~tv 306 (432)
T PRK06793 259 ADAR--RSVDIAVKELPIG-GKTLLMESYMK--KLLERS---GKTQKGSITGIYTV 306 (432)
T ss_pred HHHH--HHHHHHhcCCCCC-Ceeeeeeccch--hHHHHh---ccCCCcceEEEEEE
Confidence 9996 6666666666543 88888888843 244433 33567887666543
|
|
| >TIGR03238 dnd_assoc_3 dnd system-associated protein 3 | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.5e-10 Score=124.17 Aligned_cols=51 Identities=25% Similarity=0.349 Sum_probs=47.0
Q ss_pred cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCcc-EEEECCCcCC
Q 006505 58 RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSG-STFVNGSPID 110 (643)
Q Consensus 58 ~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G-~I~~~g~~~~ 110 (643)
+.+|++||+++++||+++|+|||||||||||+ +|+..|++| +|.++|+++.
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~ 70 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSF 70 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECC
Confidence 46899999999999999999999999999999 788888877 8999999874
|
cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A. |
| >COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1e-07 Score=97.86 Aligned_cols=234 Identities=16% Similarity=0.213 Sum_probs=151.2
Q ss_pred HHHhhcChHHHHHHHHHHHHHHHHHHHHhccCC------CChhh--HHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHH
Q 006505 375 SKNIFRTKELFACRTIQMLISGIVLGSIFHNVK------DDLTG--TEEKVGLFAFILTFLLSCTTEALPIFLQEREILM 446 (643)
Q Consensus 375 ~~~~~Rd~~~~~~r~~~~i~~~li~G~~f~~l~------~~~~~--~~~r~g~lf~~~~~~~~~~~~~~~~f~~er~v~~ 446 (643)
+......+.....+....++.+...+..+.+.+ ....+ ...-.|.+.+...+.........-.-..++..+.
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 121 (286)
T COG0842 42 FQVLVDASALIIAPILYLIIFGLLFGLREGLSGRLYHWSNPSLDYLAFIVPGVILMSVLFSGIFSFSSALFREREFGTLE 121 (286)
T ss_pred heeeeecccchhHHHHHHHHHHHHHHHHHHHhhccceecCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHhHHhhCcHH
Confidence 444445555555555556666666666655543 11111 1122333333333332222221111113444445
Q ss_pred HHhCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCCHHH
Q 006505 447 KETSCGSYRVSSYAIANGLVYLPFLLILAILFSVPLYWIVGLNPNLMAFFHFLLLIWLILYTANSVVVCFS-ALVPNFIV 525 (643)
Q Consensus 447 rE~~~~~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~~~~~l~~~~~~s~~~~i~-~~~~~~~~ 525 (643)
|=..+...+ ..+++++.+...-...+...+...++.+..| ......+..+..++.+......++|.+++ ...++.+.
T Consensus 122 ~~~~sp~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~ 199 (286)
T COG0842 122 RLLVSPVSR-LFILLGKIVPYLVVASLIAGLVLLVIAFLLG-VPFLGSLLLLLLLLLLLLLATVALGLLLSTFAKSQLQC 199 (286)
T ss_pred HHHhCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 545555433 5677777777777776666666666666667 33334455666666777777788888666 36677788
Q ss_pred HHHHHHHHHHHHHHhhccccCCCCccchhhhhhccChhHHHHHHHHHHhhCCCCccccccCCccccchHHHHHhcCCCCC
Q 006505 526 GNSVISGVMGSFFLFSGYFISKHGIPDYWIFMHYISLFKYPFEQFLINEFSDSDKCLQYIFGKCVVKGEDVLREAGYEEE 605 (643)
Q Consensus 526 a~~~~~~~~~~~~lfsGf~i~~~~ip~~~~Wl~yiSp~~y~~eal~~nef~~~~~C~~~~~~~c~~~G~~~L~~~g~~~~ 605 (643)
+..+...+..++..++|.+.|.+.+|.|++|+.+++|.+|+.+++-.....+. ..+
T Consensus 200 ~~~~~~~~~~~~~~l~g~~~p~~~~p~~~~~i~~~~P~t~~~~~~~~~~~~~~------------------------~~~ 255 (286)
T COG0842 200 ASAVGNLLILPLGFLSGVFFPLELLPAWLQGISYINPLTYAIDALRYVYLGGW------------------------RND 255 (286)
T ss_pred HHHHHHHHHHHHHHHccccCchhhhHHHHHHHHHHccHHHHHHHHHHHHhCCC------------------------chh
Confidence 88888888999999999999999999999999999999999999866555432 111
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 006505 606 SSWRNLVIMVGFILIYRFISYVILRFRCS 634 (643)
Q Consensus 606 ~~w~~~~il~~~~~~~~~l~~~~L~~~~~ 634 (643)
..|.++++++++.+++.+++...++++.+
T Consensus 256 ~~~~~~~~l~~~~~v~~~~~~~~~~~~~~ 284 (286)
T COG0842 256 GIWISLLILLLFAVVFLLLGLLLLRRRRK 284 (286)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 26889999999999999998888877654
|
|
| >PRK06067 flagellar accessory protein FlaH; Validated | Back alignment and domain information |
|---|
Probab=98.92 E-value=9.8e-09 Score=104.26 Aligned_cols=162 Identities=20% Similarity=0.246 Sum_probs=96.3
Q ss_pred eeece-EEEEecCeEEEEECCCCCCHHHHHHHHh-cCCCCCccEEEECCCcCCchhhcccEEEEccCCCCCCCCCHHHHH
Q 006505 60 VLDGV-SCKAKPWEILAIVGPSGAGKSSLLEILA-GKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTVEETL 137 (643)
Q Consensus 60 iL~~v-s~~i~~Ge~~aIlG~nGaGKSTLL~~l~-g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l 137 (643)
-|+.+ .+=+++|+++.|.|++|||||||...++ +..+ ..+ .+.|+..+. +..+-+
T Consensus 13 ~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~-~g~----------------~~~y~~~e~------~~~~~~ 69 (234)
T PRK06067 13 ELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALK-QGK----------------KVYVITTEN------TSKSYL 69 (234)
T ss_pred HHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHh-CCC----------------EEEEEEcCC------CHHHHH
Confidence 34443 5679999999999999999999998875 2211 111 234444321 233322
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCC---CC
Q 006505 138 MFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIH--DPKVLILDEPTSG---LD 212 (643)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~--~p~illlDEPtsg---LD 212 (643)
.-...+ +..-. +.+. -|.....+... ......|.++++.+.....++. +|+++++||||+. .|
T Consensus 70 ~~~~~~--g~~~~-------~~~~-~g~l~i~~~~~--~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~ 137 (234)
T PRK06067 70 KQMESV--KIDIS-------DFFL-WGYLRIFPLNT--EGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAE 137 (234)
T ss_pred HHHHHC--CCChh-------HHHh-CCCceEEeccc--cccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCC
Confidence 221111 11100 0000 00000000000 1122456788999999999987 9999999999964 55
Q ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEecCCch------HHHhhcCEEEEEeC
Q 006505 213 STSALQIIDMLKVMAETRGRTVILSIHQPGF------RIVKMFNSILMLAN 257 (643)
Q Consensus 213 ~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~------~i~~~~D~v~~L~~ 257 (643)
.....++++.++.+++ .|.|+++++|+... .+..++|-++.|+.
T Consensus 138 ~~~~~~~l~~l~~l~~-~g~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~~ 187 (234)
T PRK06067 138 EDDILNFLTEAKNLVD-LGKTILITLHPYAFSEELLSRIRSICDVYLKLRA 187 (234)
T ss_pred HHHHHHHHHHHHHHHh-CCCEEEEEecCCcCCHHHHHHHHhheEEEEEEEe
Confidence 5555666666777776 48999999998753 13456677777763
|
|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.9e-09 Score=134.28 Aligned_cols=72 Identities=19% Similarity=0.295 Sum_probs=63.3
Q ss_pred cCCCCCHHHHH------HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH----hCCCEEEEEecCCchHHH
Q 006505 177 RVRGISGGERR------RVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAE----TRGRTVILSIHQPGFRIV 246 (643)
Q Consensus 177 ~~~~LSGGerq------Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~----~~g~tvi~~~H~~~~~i~ 246 (643)
..+.||||||| |++||++++.+|++|+|||||+|||+.+...+.+.|.++.. ..|.|||++||++.. +.
T Consensus 1196 ~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~-~~ 1274 (1311)
T TIGR00606 1196 MRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDF-VE 1274 (1311)
T ss_pred CCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHH-HH
Confidence 34689999999 99999999999999999999999999999999999988742 247899999999974 66
Q ss_pred hhc
Q 006505 247 KMF 249 (643)
Q Consensus 247 ~~~ 249 (643)
.++
T Consensus 1275 ~~~ 1277 (1311)
T TIGR00606 1275 LLG 1277 (1311)
T ss_pred HHh
Confidence 654
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.8e-09 Score=133.44 Aligned_cols=77 Identities=19% Similarity=0.347 Sum_probs=68.3
Q ss_pred CcCCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCE
Q 006505 176 DRVRGISGGERRRVSIGFDVI----HDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNS 251 (643)
Q Consensus 176 ~~~~~LSGGerqRv~ia~aL~----~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~ 251 (643)
..+..||||||+|++||++++ .+|++++|||||+|||+.+...+.++|+.+++ +.++|++||++. ....||+
T Consensus 1085 ~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~--~~~~i~~sh~~~--~~~~~d~ 1160 (1179)
T TIGR02168 1085 QNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK--NTQFIVITHNKG--TMEVADQ 1160 (1179)
T ss_pred ccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc--CCEEEEEEcChh--HHHHhhh
Confidence 467899999999999999984 67799999999999999999999999999874 578999999986 4578999
Q ss_pred EEEEe
Q 006505 252 ILMLA 256 (643)
Q Consensus 252 v~~L~ 256 (643)
++.+.
T Consensus 1161 ~~~~~ 1165 (1179)
T TIGR02168 1161 LYGVT 1165 (1179)
T ss_pred Heeee
Confidence 98764
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. |
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=98.88 E-value=9.1e-09 Score=101.95 Aligned_cols=119 Identities=21% Similarity=0.383 Sum_probs=75.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC-ccEEEECCCcCCchhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHH
Q 006505 73 ILAIVGPSGAGKSSLLEILAGKLTPQ-SGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQ 151 (643)
Q Consensus 73 ~~aIlG~nGaGKSTLL~~l~g~~~~~-~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~ 151 (643)
+++|.||+||||||+++.|.+...+. .|.|...+.++.. ......+++.|...
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~-~~~~~~~~i~q~~v------------------------- 56 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEF-VHESKRSLINQREV------------------------- 56 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccc-cccCccceeeeccc-------------------------
Confidence 78999999999999999998887643 5676655444311 00111112222110
Q ss_pred HHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCC
Q 006505 152 LRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRG 231 (643)
Q Consensus 152 ~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g 231 (643)
|. ....++ -+++++|..+|+++++|||. |..+...++ +.+. .|
T Consensus 57 ------------g~-----------~~~~~~------~~i~~aLr~~pd~ii~gEir---d~e~~~~~l----~~a~-~G 99 (198)
T cd01131 57 ------------GL-----------DTLSFE------NALKAALRQDPDVILVGEMR---DLETIRLAL----TAAE-TG 99 (198)
T ss_pred ------------CC-----------CccCHH------HHHHHHhcCCcCEEEEcCCC---CHHHHHHHH----HHHH-cC
Confidence 00 000111 14677888999999999996 665443333 3444 49
Q ss_pred CEEEEEecCCchHHHhhcCEEEEEe
Q 006505 232 RTVILSIHQPGFRIVKMFNSILMLA 256 (643)
Q Consensus 232 ~tvi~~~H~~~~~i~~~~D~v~~L~ 256 (643)
..++.|+|.++ ..+..||++.+.
T Consensus 100 ~~v~~t~Ha~~--~~~~~~Rl~~l~ 122 (198)
T cd01131 100 HLVMSTLHTNS--AAKTIDRIIDVF 122 (198)
T ss_pred CEEEEEecCCc--HHHHHhHHHhhc
Confidence 99999999986 357789987764
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >cd01125 repA Hexameric Replicative Helicase RepA | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.2e-08 Score=104.07 Aligned_cols=137 Identities=24% Similarity=0.384 Sum_probs=83.9
Q ss_pred CeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECC-CcCCchhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCH
Q 006505 71 WEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNG-SPIDKAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQ 149 (643)
Q Consensus 71 Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g-~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~ 149 (643)
|++..|.||+|+|||||.-.++=-.. +|.=.+.+ .... -...+-|+.=++ +.
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va--~G~~~~g~~~~~~---~~~~Vlyi~~Ed----------------------~~ 53 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMA--LGKNLFGGGLKVT---EPGRVVYLSAED----------------------PR 53 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHh--cCccccCCccccC---CCceEEEEECCC----------------------CH
Confidence 77899999999999999887763211 12111110 1100 012344444221 12
Q ss_pred HHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHH----------------HHhcCCCEEEEeCCCC----
Q 006505 150 AQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGF----------------DVIHDPKVLILDEPTS---- 209 (643)
Q Consensus 150 ~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~----------------aL~~~p~illlDEPts---- 209 (643)
++..+++..+...+++.+..+... ..+|+.|++.+++ ....+|+++++| |++
T Consensus 54 ~~i~~Rl~~i~~~~~~~~~~~rl~-------~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~~~~ 125 (239)
T cd01125 54 EEIHRRLEAILQHLEPDDAGDRLF-------IDSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVSFHG 125 (239)
T ss_pred HHHHHHHHHHHhhcCCcCcccceE-------EeccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHHhCC
Confidence 333445556666555443322111 1244455444332 235799999999 765
Q ss_pred --CCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q 006505 210 --GLDSTSALQIIDMLKVMAETRGRTVILSIHQPG 242 (643)
Q Consensus 210 --gLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~ 242 (643)
.+|+.....+++.|++++++.|.|||+++|..-
T Consensus 126 ~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 126 VSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 479999999999999999888999999999874
|
RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent. |
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.3e-07 Score=85.75 Aligned_cols=118 Identities=31% Similarity=0.459 Sum_probs=79.2
Q ss_pred cCeEEEEECCCCCCHHHHHHHHhcCCCCCc-cEEEECCCcCCchhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCC
Q 006505 70 PWEILAIVGPSGAGKSSLLEILAGKLTPQS-GSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLP 148 (643)
Q Consensus 70 ~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~-G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~ 148 (643)
+|..+.|.||+|+||||+++.|+....... +-+.++......... ....
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~------------ 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVL------------------DQLL------------ 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCH------------------HHHH------------
Confidence 467899999999999999999999876543 445554432211000 0000
Q ss_pred HHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-----HH
Q 006505 149 QAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIID-----ML 223 (643)
Q Consensus 149 ~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~-----~L 223 (643)
.. ..........+++..+..+.++--.+|+++++||+..-.+......... ..
T Consensus 51 -----------------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~ 108 (148)
T smart00382 51 -----------------LI-----IVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLL 108 (148)
T ss_pred -----------------hh-----hhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHH
Confidence 00 0011223567777888777777777789999999999999998887765 22
Q ss_pred HHHHHhCCCEEEEEec
Q 006505 224 KVMAETRGRTVILSIH 239 (643)
Q Consensus 224 ~~l~~~~g~tvi~~~H 239 (643)
.......+..+|+++|
T Consensus 109 ~~~~~~~~~~~i~~~~ 124 (148)
T smart00382 109 LLLKSEKNLTVILTTN 124 (148)
T ss_pred HHHHhcCCCEEEEEeC
Confidence 3333345788999998
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
Probab=98.80 E-value=6.9e-09 Score=128.36 Aligned_cols=77 Identities=16% Similarity=0.250 Sum_probs=68.9
Q ss_pred cCCCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEE
Q 006505 177 RVRGISGGERRRVSIGFDVIH----DPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSI 252 (643)
Q Consensus 177 ~~~~LSGGerqRv~ia~aL~~----~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v 252 (643)
.+..||||||++++||.+++. +|++++||||++|||+.....+.++|+++++ +..+|++||++. ....||++
T Consensus 1071 ~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~--~~~~i~~t~~~~--~~~~~d~~ 1146 (1164)
T TIGR02169 1071 RLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG--EAQFIVVSLRSP--MIEYADRA 1146 (1164)
T ss_pred cchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC--CCeEEEEECcHH--HHHhccee
Confidence 567899999999999999984 7899999999999999999999999999864 578999999974 56899999
Q ss_pred EEEeC
Q 006505 253 LMLAN 257 (643)
Q Consensus 253 ~~L~~ 257 (643)
+.+..
T Consensus 1147 ~~~~~ 1151 (1164)
T TIGR02169 1147 IGVTM 1151 (1164)
T ss_pred EeEEE
Confidence 88753
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. |
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.6e-08 Score=111.85 Aligned_cols=151 Identities=18% Similarity=0.255 Sum_probs=93.0
Q ss_pred ceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEccCCCCCCCCCHHHHHH
Q 006505 59 RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTVEETLM 138 (643)
Q Consensus 59 ~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~ 138 (643)
.++++.+..+++|++++++||||+||||++..|++.+....|. +.++++.+|. ...++.|+|.
T Consensus 244 ~~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~--------------~kV~LI~~Dt---~RigA~EQLr 306 (484)
T PRK06995 244 PVLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGA--------------SKVALLTTDS---YRIGGHEQLR 306 (484)
T ss_pred hhccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCC--------------CeEEEEeCCc---cchhHHHHHH
Confidence 3566777788899999999999999999999999987554442 2478888875 3468999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHH-HHHHHHHHhcCC-----CEEEEeCCCCCCC
Q 006505 139 FSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERR-RVSIGFDVIHDP-----KVLILDEPTSGLD 212 (643)
Q Consensus 139 ~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerq-Rv~ia~aL~~~p-----~illlDEPtsgLD 212 (643)
+.++... .+........+......++.+.....+ .+...+++. .+.-..+++.++ .+|+||.++.+
T Consensus 307 ~~AeilG-Vpv~~~~~~~Dl~~aL~~L~d~d~VLI-----DTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~-- 378 (484)
T PRK06995 307 IYGKILG-VPVHAVKDAADLRLALSELRNKHIVLI-----DTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG-- 378 (484)
T ss_pred HHHHHhC-CCeeccCCchhHHHHHHhccCCCeEEe-----CCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH--
Confidence 8776542 211111222333444455655433323 333222322 233444455554 68999999888
Q ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEec
Q 006505 213 STSALQIIDMLKVMAETRGRTVILSIH 239 (643)
Q Consensus 213 ~~~~~~i~~~L~~l~~~~g~tvi~~~H 239 (643)
..+.+.++.... .+.+=++.|+
T Consensus 379 ----~~l~~i~~~f~~-~~~~g~IlTK 400 (484)
T PRK06995 379 ----DTLNEVVQAYRG-PGLAGCILTK 400 (484)
T ss_pred ----HHHHHHHHHhcc-CCCCEEEEeC
Confidence 334445555544 3555444454
|
|
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.7e-08 Score=121.58 Aligned_cols=78 Identities=31% Similarity=0.460 Sum_probs=67.4
Q ss_pred cCCCCCHHHHH------HHHHHHHHhcC-----C-CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCC-EEEEEecCCch
Q 006505 177 RVRGISGGERR------RVSIGFDVIHD-----P-KVLILDEPTSGLDSTSALQIIDMLKVMAETRGR-TVILSIHQPGF 243 (643)
Q Consensus 177 ~~~~LSGGerq------Rv~ia~aL~~~-----p-~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~-tvi~~~H~~~~ 243 (643)
.+..||||||+ |++++++++.+ | +++++||||++||+.....+.+.|+.+++. |. +||++||++.
T Consensus 778 ~~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~-~~~qviiish~~~- 855 (880)
T PRK02224 778 EPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRL-GVEQIVVVSHDDE- 855 (880)
T ss_pred ChhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhc-CCCeEEEEECChH-
Confidence 46789999999 89999888863 3 679999999999999999999999999764 54 8999999986
Q ss_pred HHHhhcCEEEEEeC
Q 006505 244 RIVKMFNSILMLAN 257 (643)
Q Consensus 244 ~i~~~~D~v~~L~~ 257 (643)
....+|+++.+.+
T Consensus 856 -~~~~ad~~~~~~~ 868 (880)
T PRK02224 856 -LVGAADDLVRVEK 868 (880)
T ss_pred -HHHhcCeeEEeec
Confidence 4578999999964
|
|
| >PRK13891 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.6e-07 Score=112.07 Aligned_cols=55 Identities=24% Similarity=0.253 Sum_probs=48.7
Q ss_pred HHHHHhcCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHh
Q 006505 191 IGFDVIHDPKVLILDEPTSGL-DSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVK 247 (643)
Q Consensus 191 ia~aL~~~p~illlDEPtsgL-D~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~ 247 (643)
|++++..+|+++++|||+.+| |+..+..+.+.++.+++. |.+++++||+++. +.+
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~-g~~vil~TQs~~d-~~~ 735 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKA-NCLVLMATQSLSD-AAN 735 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHH-Hhh
Confidence 567788999999999999999 799999999999999874 8999999999974 554
|
|
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.1e-08 Score=97.15 Aligned_cols=84 Identities=15% Similarity=0.142 Sum_probs=62.1
Q ss_pred eeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEccCC--CCCCCCCHHHHH
Q 006505 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRD--TLFPLLTVEETL 137 (643)
Q Consensus 60 iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~--~l~~~lTv~E~l 137 (643)
..+=+.+.+++|+.++|+||||||||||+++|+|+.+|+.|.|.+++..-.....+..++++.|.+ ...+..|..+.+
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 93 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLL 93 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHH
Confidence 334455678899999999999999999999999999999999999774321112234466666543 346677888888
Q ss_pred HHHHHh
Q 006505 138 MFSAKL 143 (643)
Q Consensus 138 ~~~~~~ 143 (643)
..+.+.
T Consensus 94 ~~~lR~ 99 (186)
T cd01130 94 RSALRM 99 (186)
T ss_pred HHHhcc
Confidence 766543
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >TIGR01248 drrC daunorubicin resistance protein C | Back alignment and domain information |
|---|
Probab=98.68 E-value=5.7e-07 Score=85.29 Aligned_cols=131 Identities=12% Similarity=-0.030 Sum_probs=96.8
Q ss_pred HHHhhHHHHHHhCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccHH--HHHHHHHHHHHHHHHHHHHHHH
Q 006505 438 FLQEREILMKETSCGSYRVSSYAIANGLVYLPFLLILAILFSVPLYWIVGLNPNLM--AFFHFLLLIWLILYTANSVVVC 515 (643)
Q Consensus 438 f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~--~f~~f~~~~~l~~~~~~s~~~~ 515 (643)
.-.|+..+.|-+..-. +++.|+++|++...-..+++.++..++.+. .|.+.+.. ..+.+++...+.......++..
T Consensus 14 ~dr~~G~~~~l~~tP~-~~~~~~~g~~l~~~~~~~~~~~ii~~v~~~-~g~~~~~~~~~~~~~~~~~~l~~~~f~~l~~~ 91 (152)
T TIGR01248 14 IDREIGLLSRLWVLPI-HRASALLARIIAETIRAFIGTILILAIALA-LGFRFRNGVAAALLFLLIPSIFGIAFAALVMA 91 (152)
T ss_pred HHHHhHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356677777777665 788999999999999999998877777754 48877632 2233333334444455566666
Q ss_pred HHhccCCHHHHHHHHHHHHHHHHHhhccccCCCCccchhhhhhccChhHHHHHHHH
Q 006505 516 FSALVPNFIVGNSVISGVMGSFFLFSGYFISKHGIPDYWIFMHYISLFKYPFEQFL 571 (643)
Q Consensus 516 i~~~~~~~~~a~~~~~~~~~~~~lfsGf~i~~~~ip~~~~Wl~yiSp~~y~~eal~ 571 (643)
++...++.+..+ ....+..|+...||.+.|.+++|.|++|+.+++|++|+.|++=
T Consensus 92 ~a~~~~~~~~~~-~~~~v~~pl~flsg~~~P~~~mP~wlq~ia~~~Plt~~~~~~R 146 (152)
T TIGR01248 92 MALRKEGRFAME-ALELAQAAAAFLNPGATPIKLFPDWAQPLIAHQPISPAIEACA 146 (152)
T ss_pred HHHHcCCHHHHH-HHHHHHHHHHHHhhhhcCHHhCcHHHHHHHhhCCccHHHHHHH
Confidence 665566665433 4466777888899999999999999999999999999999874
|
The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters. |
| >TIGR02655 circ_KaiC circadian clock protein KaiC | Back alignment and domain information |
|---|
Probab=98.67 E-value=7.7e-09 Score=116.07 Aligned_cols=166 Identities=16% Similarity=0.164 Sum_probs=104.5
Q ss_pred eeece-EEEEecCeEEEEECCCCCCHHHHHHHH--hcCCCCCccEEEECCCcCCchhhc---ccEEEEccCCCCCCCCCH
Q 006505 60 VLDGV-SCKAKPWEILAIVGPSGAGKSSLLEIL--AGKLTPQSGSTFVNGSPIDKAQFR---KVSGYVTQRDTLFPLLTV 133 (643)
Q Consensus 60 iL~~v-s~~i~~Ge~~aIlG~nGaGKSTLL~~l--~g~~~~~~G~I~~~g~~~~~~~~~---~~i~yv~Q~~~l~~~lTv 133 (643)
-|+.+ .+=+++|..+.|.||+|||||||..-. .|..+..+..+++...+. +.+++ +..|+-.++..--.
T Consensus 9 gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~-~~~l~~~~~~~G~~~~~~~~~g---- 83 (484)
T TIGR02655 9 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEES-PQDIIKNARSFGWDLQKLVDEG---- 83 (484)
T ss_pred hHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecC-HHHHHHHHHHcCCCHHHHhhcC----
Confidence 35554 567999999999999999999999866 466555666777765432 22222 23344333211000
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHH--HHHhcCCCEEEEeCCCCCC
Q 006505 134 EETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIG--FDVIHDPKVLILDEPTSGL 211 (643)
Q Consensus 134 ~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia--~aL~~~p~illlDEPtsgL 211 (643)
++.+ +. ..+. .....+++.+++++..++ ....+|+|++|||.|+ .++...|+..
T Consensus 84 --~l~~---~~-~~~~----~~~~~~~~~~~l~~~l~~-----i~~~ls~g~~qRVvIDSl~aL~~~~~~~--------- 139 (484)
T TIGR02655 84 --KLFI---LD-ASPD----PEGQDVVGGFDLSALIER-----INYAIRKYKAKRVSIDSVTAVFQQYDAV--------- 139 (484)
T ss_pred --ceEE---Ee-cCch----hccccccccCCHHHHHHH-----HHHHHHHhCCcEEEEeehhHhhhhcCch---------
Confidence 0000 00 0000 011123455566655544 3468999999999999 6666665543
Q ss_pred CHHHHHHHHHHHHHHHHhCCCEEEEEecCCchH-------H-HhhcCEEEEEe
Q 006505 212 DSTSALQIIDMLKVMAETRGRTVILSIHQPGFR-------I-VKMFNSILMLA 256 (643)
Q Consensus 212 D~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~-------i-~~~~D~v~~L~ 256 (643)
...+..+.++++.+++ .|+|+|+++|+++.. + ..++|.|+.|+
T Consensus 140 -~~~r~~l~~Li~~L~~-~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 140 -SVVRREIFRLVARLKQ-IGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred -HHHHHHHHHHHHHHHH-CCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 4677888999988876 599999999987521 1 44789999987
|
Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. |
| >TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.7e-08 Score=100.63 Aligned_cols=165 Identities=21% Similarity=0.173 Sum_probs=85.8
Q ss_pred eeece-EEEEecCeEEEEECCCCCCHHHHHHHHh--cCCCCCccEEEECCCcCCch--hhcccEEEEccCCCCCCCCCHH
Q 006505 60 VLDGV-SCKAKPWEILAIVGPSGAGKSSLLEILA--GKLTPQSGSTFVNGSPIDKA--QFRKVSGYVTQRDTLFPLLTVE 134 (643)
Q Consensus 60 iL~~v-s~~i~~Ge~~aIlG~nGaGKSTLL~~l~--g~~~~~~G~I~~~g~~~~~~--~~~~~i~yv~Q~~~l~~~lTv~ 134 (643)
-|+++ .+-+++|++++|.||+|+|||||...++ +. .+.++.+++........ ...+..++.+|+....+.+.+.
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~-~~g~~~~~is~e~~~~~i~~~~~~~g~~~~~~~~~~~l~i~ 86 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGL-RDGDPVIYVTTEESRESIIRQAAQFGMDFEKAIEEGKLVII 86 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHH-hcCCeEEEEEccCCHHHHHHHHHHhCCCHHHHhhcCCEEEE
Confidence 35553 5679999999999999999999988654 43 44566677776432111 1122345544432111222221
Q ss_pred HHHHHH----HHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q 006505 135 ETLMFS----AKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSG 210 (643)
Q Consensus 135 E~l~~~----~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsg 210 (643)
|.+... ... ...+.++..+++.++++..+... .+.++-.+..+++|||+
T Consensus 87 d~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~------------------------~~vvIDsl~~l~~~~~~-- 139 (229)
T TIGR03881 87 DALMKEKEDEWSL-RELSIEELLNKVIEAKKYLGYGH------------------------ARLVIDSMSAFWLDKPA-- 139 (229)
T ss_pred Ecccccccccccc-ccCCHHHHHHHHHHHHHhhccCc------------------------eEEEecCchhhhccChH--
Confidence 111000 000 01122333333444433332210 11223333444445542
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEecCCch-------HHHhhcCEEEEEe
Q 006505 211 LDSTSALQIIDMLKVMAETRGRTVILSIHQPGF-------RIVKMFNSILMLA 256 (643)
Q Consensus 211 LD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~-------~i~~~~D~v~~L~ 256 (643)
...++...|++.+++.|.|+|+++|.... .+..++|.|+.|+
T Consensus 140 ----~~r~~~~~l~~~l~~~~~tvil~~~~~~~~~~~~~~~~~~l~D~vI~L~ 188 (229)
T TIGR03881 140 ----MARKYSYYLKRVLNRWNFTILLTSQYAITTSQAFGFGIEHVADGIIRFR 188 (229)
T ss_pred ----HHHHHHHHHHHHHHhCCCEEEEEecccccCCCCcccceEEEEeEEEEEE
Confidence 34455555666656679999999996431 2345688888886
|
Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain. |
| >PRK07196 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.62 E-value=4e-08 Score=107.39 Aligned_cols=174 Identities=19% Similarity=0.210 Sum_probs=110.6
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCc---cEEEECCCcCCc---h------hhcccEEEEccC
Q 006505 57 VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQS---GSTFVNGSPIDK---A------QFRKVSGYVTQR 124 (643)
Q Consensus 57 ~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~---G~I~~~g~~~~~---~------~~~~~i~yv~Q~ 124 (643)
+..+++++ +.+.+||.++|+|+||+|||||+++|+|..+++. |.|-.+|+++.. . ..|..+++++|+
T Consensus 142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d 220 (434)
T PRK07196 142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPAD 220 (434)
T ss_pred ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCC
Confidence 45799999 9999999999999999999999999999998875 445555555422 1 124468999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 006505 125 DTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLIL 204 (643)
Q Consensus 125 ~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illl 204 (643)
...+..+++.|++.+.+...... .+.|--+++ .+...++. -+++ ++ .+
T Consensus 221 ~s~~~rl~a~e~a~~iAEyfr~~-----g~~Vll~~D--sltr~a~A------~REi--------sl-----------~~ 268 (434)
T PRK07196 221 ESPLMRIKATELCHAIATYYRDK-----GHDVLLLVD--SLTRYAMA------QREI--------AL-----------SL 268 (434)
T ss_pred CChhhhHHHHHHHHHHHHHhhhc-----cCCEEEeec--chhHHHhh------hhHH--------HH-----------hc
Confidence 99999999999998776543110 000100000 01111100 0111 11 12
Q ss_pred eCC--CCCCCHHHHHHHHHHHHHHHHhC--C-CEEEEEecCCchHHHh-hcCEEEEEeCCeEEEe
Q 006505 205 DEP--TSGLDSTSALQIIDMLKVMAETR--G-RTVILSIHQPGFRIVK-MFNSILMLANGSVLHH 263 (643)
Q Consensus 205 DEP--tsgLD~~~~~~i~~~L~~l~~~~--g-~tvi~~~H~~~~~i~~-~~D~v~~L~~G~iv~~ 263 (643)
.|| +.|-.+..-..+-+++.+..+.. | .|.+-+..-+..++-+ .+|.+.-+-||+++-.
T Consensus 269 ge~P~~~Gyp~svf~~l~~l~ERag~~~~~GSIT~~~tVl~~~dD~~dpi~d~~~~ilDG~ivLs 333 (434)
T PRK07196 269 GEPPATKGYPPSAFSIIPRLAESAGNSSGNGTMTAIYTVLAEGDDQQDPIVDCARAVLDGHIVLS 333 (434)
T ss_pred CCCCcccCcCHHHHHHhHHHHHHhhcCCCCEEeeeeeEEEccCCCCCCchhHhhhhhcceEEEEc
Confidence 344 33777777777888887764322 2 4666666544433322 5677777889999874
|
|
| >TIGR01026 fliI_yscN ATPase FliI/YscN family | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.8e-07 Score=101.47 Aligned_cols=176 Identities=18% Similarity=0.245 Sum_probs=110.2
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc-----------hhhcccEEEEccCC
Q 006505 57 VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-----------AQFRKVSGYVTQRD 125 (643)
Q Consensus 57 ~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~-----------~~~~~~i~yv~Q~~ 125 (643)
+..+++++ +.+.+||.++|+|+||+|||||+++|+|..+++.|.+...|+.-.+ ..+++.+.++.+.+
T Consensus 150 Gi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~d 228 (440)
T TIGR01026 150 GVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATSD 228 (440)
T ss_pred eeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeecchHHHHHHHHHhcccccceEEEEEECCC
Confidence 45789999 9999999999999999999999999999999988877776654321 11233344444433
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCH-HHHHHHHHHHHHhcCCCEEEE
Q 006505 126 TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISG-GERRRVSIGFDVIHDPKVLIL 204 (643)
Q Consensus 126 ~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSG-GerqRv~ia~aL~~~p~illl 204 (643)
. ++.+-..-+ . ... .+.+.+..-|-+ .. + ....++- -|-+| .|+ +.+
T Consensus 229 ~-----~p~~r~~~~-~--------~a~-t~AE~frd~G~~-Vl---l---~~DslTr~A~A~R-Eis---------l~~ 276 (440)
T TIGR01026 229 Q-----SPLLRLKGA-Y--------VAT-AIAEYFRDQGKD-VL---L---LMDSVTRFAMAQR-EIG---------LAA 276 (440)
T ss_pred C-----CHHHHHHHH-H--------HHH-HHHHHHHHCCCC-EE---E---EEeChHHHHHHHH-HHH---------Hhc
Confidence 2 222211100 0 000 111222222311 00 0 0011110 01111 011 234
Q ss_pred eCC--CCCCCHHHHHHHHHHHHHHHHhCCC-------EEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHH
Q 006505 205 DEP--TSGLDSTSALQIIDMLKVMAETRGR-------TVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLL 269 (643)
Q Consensus 205 DEP--tsgLD~~~~~~i~~~L~~l~~~~g~-------tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 269 (643)
.|| +.|+|+.....+.+++.+.... +. ||++.+||.+ ..++|++.-+.+|+++.++..++.
T Consensus 277 ge~P~~~Gypp~~~~~l~~l~ERag~~-~~GSIT~i~tVl~~~~d~~---dpi~d~~~~i~dG~ivLsr~la~~ 346 (440)
T TIGR01026 277 GEPPATKGYTPSVFSTLPRLLERAGAS-GKGSITAFYTVLVEGDDMN---EPIADSVRGILDGHIVLSRALAQR 346 (440)
T ss_pred CCCCcccccChhHHHHHHHHHHHhccC-CCCeeeEEEEEEccCcCCC---cchhhhhccccceEEEEecchhhC
Confidence 565 4599999999999999998754 77 8999999975 357899999999999999887654
|
This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins. |
| >TIGR01420 pilT_fam pilus retraction protein PilT | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.4e-07 Score=98.40 Aligned_cols=123 Identities=23% Similarity=0.432 Sum_probs=78.0
Q ss_pred EecCeEEEEECCCCCCHHHHHHHHhcCCC-CCccEEEECCCcCCchhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCC
Q 006505 68 AKPWEILAIVGPSGAGKSSLLEILAGKLT-PQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLR 146 (643)
Q Consensus 68 i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~-~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~ 146 (643)
.+++.++.|.||+||||||+|++|.+... +..|.|..-+.++... .....+.+.|..
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~-~~~~~~~i~q~e--------------------- 176 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYV-HRNKRSLINQRE--------------------- 176 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhh-ccCccceEEccc---------------------
Confidence 35788999999999999999999998665 3466666554443110 000111111110
Q ss_pred CCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 006505 147 LPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVM 226 (643)
Q Consensus 147 ~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l 226 (643)
.|.. ..+ -.-+++.+|-.+|+++++||+. |+.++...++ .
T Consensus 177 ----------------vg~~-------------~~~----~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~----a 216 (343)
T TIGR01420 177 ----------------VGLD-------------TLS----FANALRAALREDPDVILIGEMR---DLETVELALT----A 216 (343)
T ss_pred ----------------cCCC-------------CcC----HHHHHHHhhccCCCEEEEeCCC---CHHHHHHHHH----H
Confidence 0000 000 1123556788899999999997 8888865444 3
Q ss_pred HHhCCCEEEEEecCCchHHHhhcCEEEEE
Q 006505 227 AETRGRTVILSIHQPGFRIVKMFNSILML 255 (643)
Q Consensus 227 ~~~~g~tvi~~~H~~~~~i~~~~D~v~~L 255 (643)
+. .|.+|+.|+|-.+ .....+|++-|
T Consensus 217 a~-tGh~v~~T~Ha~~--~~~~~~Rl~~~ 242 (343)
T TIGR01420 217 AE-TGHLVFGTLHTNS--AAQTIERIIDV 242 (343)
T ss_pred HH-cCCcEEEEEcCCC--HHHHHHHHHHh
Confidence 44 4999999999976 34667777655
|
This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. |
| >PRK06002 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.7e-07 Score=102.54 Aligned_cols=81 Identities=21% Similarity=0.193 Sum_probs=63.9
Q ss_pred hhhcccccccc-cccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECC---CcCCc-------hh
Q 006505 45 LSKLEEAADSD-GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNG---SPIDK-------AQ 113 (643)
Q Consensus 45 ~~~~~~~~~~~-~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g---~~~~~-------~~ 113 (643)
..+.+++++.+ .+..+++.++ .+.+||.++|+||||+|||||+++|+++.+|+.|.|.+.| +++.. ..
T Consensus 139 ~~~r~~v~~~l~TGi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~l~~~ 217 (450)
T PRK06002 139 AMTRARVETGLRTGVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDTLADN 217 (450)
T ss_pred CeEeecceEEcCCCcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHHHHHh
Confidence 34556666666 3467888886 9999999999999999999999999999999999998865 44421 11
Q ss_pred hcccEEEEccCCC
Q 006505 114 FRKVSGYVTQRDT 126 (643)
Q Consensus 114 ~~~~i~yv~Q~~~ 126 (643)
.++.+++|+|.+.
T Consensus 218 r~rtI~vV~qsd~ 230 (450)
T PRK06002 218 LKKAVAVVATSDE 230 (450)
T ss_pred hCCeEEEEEcCCC
Confidence 2457999999875
|
|
| >PRK05399 DNA mismatch repair protein MutS; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.1e-07 Score=109.42 Aligned_cols=139 Identities=18% Similarity=0.249 Sum_probs=86.8
Q ss_pred cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEccCCCCCCCCCHHHHH
Q 006505 58 RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTVEETL 137 (643)
Q Consensus 58 ~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l 137 (643)
..+=+|+++. +.+.++.|.|||++||||+||.++-..- +.+.-+|||-+..-+ ++.+.
T Consensus 595 ~~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~i-----------------lAq~G~~VPa~~a~i---~~~d~- 652 (854)
T PRK05399 595 PFVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVL-----------------LAQIGSFVPAESARI---GIVDR- 652 (854)
T ss_pred ceEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHH-----------------HHhcCCceeccceEe---cccCe-
Confidence 3466777777 6778999999999999999999874410 111112444322111 11111
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHh--cCCCEEEEeCC---CCCCC
Q 006505 138 MFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVI--HDPKVLILDEP---TSGLD 212 (643)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~--~~p~illlDEP---tsgLD 212 (643)
++.++|-. |....+.|-=+.....++..|- ++++++++||| |+.+|
T Consensus 653 ---------------------I~triga~--------d~i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~d 703 (854)
T PRK05399 653 ---------------------IFTRIGAS--------DDLASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYD 703 (854)
T ss_pred ---------------------eeeccCcc--------cccccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcch
Confidence 11111211 2233466766666666666554 48999999999 88888
Q ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCE
Q 006505 213 STSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNS 251 (643)
Q Consensus 213 ~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~ 251 (643)
..+ ....+++.+.+..|.+++++||.. ++.+++++
T Consensus 704 g~a--ia~aile~l~~~~~~~~l~aTH~~--el~~l~~~ 738 (854)
T PRK05399 704 GLS--IAWAVAEYLHDKIGAKTLFATHYH--ELTELEEK 738 (854)
T ss_pred hHH--HHHHHHHHHHhcCCceEEEEechH--HHHHHhhh
Confidence 544 345566666664468999999995 56777765
|
|
| >PRK13898 type IV secretion system ATPase VirB4; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.4e-06 Score=101.77 Aligned_cols=49 Identities=27% Similarity=0.304 Sum_probs=43.4
Q ss_pred HHhcCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHHhCCCEEEEEecCCch
Q 006505 194 DVIHDPKVLILDEPTSGLD-STSALQIIDMLKVMAETRGRTVILSIHQPGF 243 (643)
Q Consensus 194 aL~~~p~illlDEPtsgLD-~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~ 243 (643)
.+..+|.++++|||...|| +..+..+.+.++.+.+ .|..++++||+++.
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK-~~~~~i~~TQ~~~d 687 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRK-LNTFVIFATQSVED 687 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHH
Confidence 3456899999999999999 8889999999999976 48899999999863
|
|
| >COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.45 E-value=4.7e-07 Score=109.27 Aligned_cols=79 Identities=23% Similarity=0.401 Sum_probs=69.8
Q ss_pred CcCCCCCHHHHHHHHHHHHHh------cC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHh
Q 006505 176 DRVRGISGGERRRVSIGFDVI------HD--PKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVK 247 (643)
Q Consensus 176 ~~~~~LSGGerqRv~ia~aL~------~~--p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~ 247 (643)
..+..|||||+-.++||.+|+ .+ -++++|||||..||+.+...+++.|..+... +.+|++|||+. +..+
T Consensus 811 r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~-~~qiiIISH~e--el~e 887 (908)
T COG0419 811 RPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSD-GRQIIIISHVE--ELKE 887 (908)
T ss_pred cccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhc-CCeEEEEeChH--HHHH
Confidence 478899999999888877664 35 6899999999999999999999999999875 89999999997 4678
Q ss_pred hcCEEEEEeC
Q 006505 248 MFNSILMLAN 257 (643)
Q Consensus 248 ~~D~v~~L~~ 257 (643)
.+|.++.+..
T Consensus 888 ~~~~~i~V~k 897 (908)
T COG0419 888 RADVRIRVKK 897 (908)
T ss_pred hCCeEEEEEe
Confidence 9999999874
|
|
| >PRK09825 idnK D-gluconate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.8e-07 Score=91.00 Aligned_cols=66 Identities=21% Similarity=0.343 Sum_probs=47.8
Q ss_pred cCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCch-hhc-ccEEEEccCCCCCCCCCHHHHHHH
Q 006505 70 PWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKA-QFR-KVSGYVTQRDTLFPLLTVEETLMF 139 (643)
Q Consensus 70 ~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~-~~~-~~i~yv~Q~~~l~~~lTv~E~l~~ 139 (643)
+||+++|+|+||||||||+++|+|++.+ +.++|.++... ..+ ...++.+|+...++..++.++..+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 69 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASY 69 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHH
Confidence 6999999999999999999999999876 57888776432 222 235666776555555555555544
|
|
| >cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.4e-07 Score=93.12 Aligned_cols=113 Identities=20% Similarity=0.197 Sum_probs=65.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHH
Q 006505 73 ILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQL 152 (643)
Q Consensus 73 ~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~ 152 (643)
+++|.||||||||||.++|++++ ..|. +.++++|+.+ ..++..+....... ....+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~----------------~~v~~~D~~~-~~~~~~~~~~~~~~-~~~~~~~~~ 60 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPK----------------VVIISQDSYY-KDLSHEELEERKNN-NYDHPDAFD 60 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCC----------------eEEEEecccc-cccccccHHHhccC-CCCCCCccc
Confidence 58999999999999999999987 2222 2344444322 11222222211110 001111111
Q ss_pred HHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Q 006505 153 RARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDS 213 (643)
Q Consensus 153 ~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~ 213 (643)
.+...+.++.+...+.. ..+....|.|++++..+ .+.+|+++++|+|..+.++
T Consensus 61 ~~~~~~~l~~l~~~~~~-----~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 61 FDLLISHLQDLKNGKSV-----EIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred HHHHHHHHHHHHCCCCE-----eccccccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 22334555555543322 23456788888776555 5688999999999999886
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. |
| >TIGR00416 sms DNA repair protein RadA | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.6e-06 Score=96.47 Aligned_cols=144 Identities=22% Similarity=0.266 Sum_probs=86.1
Q ss_pred eeece-EEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccE-EEECCCcCCchhhc---ccEEEEccCCCCCCCCCHH
Q 006505 60 VLDGV-SCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGS-TFVNGSPIDKAQFR---KVSGYVTQRDTLFPLLTVE 134 (643)
Q Consensus 60 iL~~v-s~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~-I~~~g~~~~~~~~~---~~i~yv~Q~~~l~~~lTv~ 134 (643)
-|+.+ .+=+.+|+++.|.|++|+|||||+..++.......+. +++.+++.. .+++ +++++..+
T Consensus 82 ~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~-~qi~~ra~rlg~~~~----------- 149 (454)
T TIGR00416 82 ELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESL-QQIKMRAIRLGLPEP----------- 149 (454)
T ss_pred HHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCH-HHHHHHHHHcCCChH-----------
Confidence 35555 4679999999999999999999999988765443333 355554321 1111 11111111
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHH-hcCCCEEEEeCCCCCC--
Q 006505 135 ETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDV-IHDPKVLILDEPTSGL-- 211 (643)
Q Consensus 135 E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL-~~~p~illlDEPtsgL-- 211 (643)
++. +. .+.+- + .|..++ -.+|+++++|.-++=.
T Consensus 150 -~l~--------------------------~~------------~e~~~-~----~I~~~i~~~~~~~vVIDSIq~l~~~ 185 (454)
T TIGR00416 150 -NLY--------------------------VL------------SETNW-E----QICANIEEENPQACVIDSIQTLYSP 185 (454)
T ss_pred -HeE--------------------------Ec------------CCCCH-H----HHHHHHHhcCCcEEEEecchhhccc
Confidence 000 00 00000 0 011111 1478999999876521
Q ss_pred --C-----HHHHHHHHHHHHHHHHhCCCEEEEEecCCch-------HHHhhcCEEEEEeCCe
Q 006505 212 --D-----STSALQIIDMLKVMAETRGRTVILSIHQPGF-------RIVKMFNSILMLANGS 259 (643)
Q Consensus 212 --D-----~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~-------~i~~~~D~v~~L~~G~ 259 (643)
+ ....++++..|.+++++.|.|++++.|.... .+..++|.|+.|+.++
T Consensus 186 ~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~~~ 247 (454)
T TIGR00416 186 DISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDR 247 (454)
T ss_pred ccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEEeccC
Confidence 1 2334567777888888899999999996431 1456899999998654
|
The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)). |
| >cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases | Back alignment and domain information |
|---|
Probab=98.31 E-value=4.8e-06 Score=86.29 Aligned_cols=163 Identities=16% Similarity=0.101 Sum_probs=86.2
Q ss_pred cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCC-ccEEEECCCcCCchhhc-ccEEEEccCCCCCCCCCHHH
Q 006505 58 RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQ-SGSTFVNGSPIDKAQFR-KVSGYVTQRDTLFPLLTVEE 135 (643)
Q Consensus 58 ~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~-~G~I~~~g~~~~~~~~~-~~i~yv~Q~~~l~~~lTv~E 135 (643)
.+.|+++.+-+.+|+++.|.|++|+|||||+..++...... ...|.+-..+.+..++. +..+.....+...+. +.
T Consensus 17 ~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~~~~~~~r~~~~~~~~~~~~~~-~~-- 93 (271)
T cd01122 17 FPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPVVRTARRLLGQYAGKRLHLPD-TV-- 93 (271)
T ss_pred cceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccCHHHHHHHHHHHHhCCCcccCC-cc--
Confidence 45789998999999999999999999999999887554322 22333322221111111 111100000100000 00
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHh--cCCCEEEEeCCCCCCCH
Q 006505 136 TLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVI--HDPKVLILDEPTSGLDS 213 (643)
Q Consensus 136 ~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~--~~p~illlDEPtsgLD~ 213 (643)
. ... .++++++++.+.-.+.. .+-+ .....+ -.+-+..++.++ .+|+++++|..+.-.+.
T Consensus 94 --------~-~~~----~~~~~~~~~~~~~~~~l--~i~d-~~~~~~--~~~i~~~i~~~~~~~~~~~vvID~l~~l~~~ 155 (271)
T cd01122 94 --------F-IYT----LEEFDAAFDEFEGTGRL--FMYD-SFGEYS--MDSVLEKVRYMAVSHGIQHIIIDNLSIMVSD 155 (271)
T ss_pred --------c-ccc----HHHHHHHHHHhcCCCcE--EEEc-CCCccC--HHHHHHHHHHHHhcCCceEEEECCHHHHhcc
Confidence 0 001 12233333333110000 0001 111111 234445555554 47999999998764432
Q ss_pred -------H-HHHHHHHHHHHHHHhCCCEEEEEecCC
Q 006505 214 -------T-SALQIIDMLKVMAETRGRTVILSIHQP 241 (643)
Q Consensus 214 -------~-~~~~i~~~L~~l~~~~g~tvi~~~H~~ 241 (643)
. ...+++..|++++++.|.||++++|-.
T Consensus 156 ~~~~~~~~~~~~~~~~~L~~la~~~~vtvll~sq~~ 191 (271)
T cd01122 156 ERASGDERKALDEIMTKLRGFATEHGIHITLVSHLR 191 (271)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHhCCEEEEEeccc
Confidence 1 245778889999998999999999854
|
Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands. |
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.31 E-value=9.2e-07 Score=95.44 Aligned_cols=78 Identities=21% Similarity=0.226 Sum_probs=61.0
Q ss_pred eeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEccCCCCCCCCCHHHHHHH
Q 006505 61 LDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTVEETLMF 139 (643)
Q Consensus 61 L~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~ 139 (643)
++.+.-.+++|+.++|+|+||+|||||+++|+|...+.+|+|.+++........++.+.+++|+..++++ ....++.+
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~Dt-pG~~~~~l 262 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHPLPSGGLLIDT-PGMRELQL 262 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEEecCCCeecCC-Cchhhhcc
Confidence 4455556779999999999999999999999999999999999987543333345678999998877764 44555443
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.7e-06 Score=106.99 Aligned_cols=162 Identities=17% Similarity=0.287 Sum_probs=90.4
Q ss_pred eEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCC-CccEEEECCCcCCchhhcccEEEEccCCCCCCCCCHHHHHHHHHH
Q 006505 64 VSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTP-QSGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTVEETLMFSAK 142 (643)
Q Consensus 64 vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~-~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~ 142 (643)
+++..+++++++|.|++|+|||||++++++.... .+|.+++++..+... .. .+-.++... .+...
T Consensus 200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~--~~--~~~~~~~~~-------~~~~~--- 265 (1153)
T PLN03210 200 LHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKS--ME--IYSSANPDD-------YNMKL--- 265 (1153)
T ss_pred HccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccc--hh--hcccccccc-------cchhH---
Confidence 4567788999999999999999999999776544 489999876322110 00 010111000 01000
Q ss_pred hcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q 006505 143 LRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDM 222 (643)
Q Consensus 143 ~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~ 222 (643)
...++.+.++++..++. +..+ ++.|+| |..++-+++||+- |... .++.
T Consensus 266 -------~l~~~~l~~il~~~~~~-----------~~~~-~~~~~~------L~~krvLLVLDdv----~~~~---~l~~ 313 (1153)
T PLN03210 266 -------HLQRAFLSEILDKKDIK-----------IYHL-GAMEER------LKHRKVLIFIDDL----DDQD---VLDA 313 (1153)
T ss_pred -------HHHHHHHHHHhCCCCcc-----------cCCH-HHHHHH------HhCCeEEEEEeCC----CCHH---HHHH
Confidence 00122334444443331 1122 566666 3355667888984 4333 3444
Q ss_pred HHHHHH--hCCCEEEEEecCCchHHHhh-cCEEEEEeCCeEEEecChhHHHHHHHHcCC
Q 006505 223 LKVMAE--TRGRTVILSIHQPGFRIVKM-FNSILMLANGSVLHHGTVDLLSVSLRMMGL 278 (643)
Q Consensus 223 L~~l~~--~~g~tvi~~~H~~~~~i~~~-~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~ 278 (643)
|+...+ ..|.+||+|||+... +... +|+++.+.. =+.+++.+.|....+
T Consensus 314 L~~~~~~~~~GsrIIiTTrd~~v-l~~~~~~~~~~v~~------l~~~ea~~LF~~~Af 365 (1153)
T PLN03210 314 LAGQTQWFGSGSRIIVITKDKHF-LRAHGIDHIYEVCL------PSNELALEMFCRSAF 365 (1153)
T ss_pred HHhhCccCCCCcEEEEEeCcHHH-HHhcCCCeEEEecC------CCHHHHHHHHHHHhc
Confidence 443322 248899999999753 3333 577665531 134567777766544
|
syringae 6; Provisional |
| >TIGR02680 conserved hypothetical protein TIGR02680 | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.1e-06 Score=109.48 Aligned_cols=61 Identities=23% Similarity=0.473 Sum_probs=53.7
Q ss_pred cCCCCCHHHHHHHH----HHHH--------HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q 006505 177 RVRGISGGERRRVS----IGFD--------VIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQP 241 (643)
Q Consensus 177 ~~~~LSGGerqRv~----ia~a--------L~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~ 241 (643)
...+||||||||+. +|++ +..+|++++|||||+|||+.+...++++++++ |.++|++||..
T Consensus 1244 ~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l----~~~~i~~s~~~ 1316 (1353)
T TIGR02680 1244 RFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL----DLDFVMTSERE 1316 (1353)
T ss_pred cccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh----CCCEEEEccch
Confidence 46899999999996 4644 55899999999999999999999999999876 78899999885
|
Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length. |
| >PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.4e-06 Score=77.05 Aligned_cols=59 Identities=25% Similarity=0.477 Sum_probs=48.3
Q ss_pred ccccc--cCCccccchHHHHH-hcCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 006505 580 KCLQY--IFGKCVVKGEDVLR-EAGYEEESSWRNLVIMVGFILIYRFISYVILRFRCSQRSF 638 (643)
Q Consensus 580 ~C~~~--~~~~c~~~G~~~L~-~~g~~~~~~w~~~~il~~~~~~~~~l~~~~L~~~~~~~~~ 638 (643)
.|.-. ..|...++|++||+ +|+++.+|+|||++|+++|+++|.++.++++.+.+.....
T Consensus 18 ~C~~~Ga~~G~~~V~G~~YL~~~y~y~~sh~WRN~GIli~f~i~f~~~~~~~~e~~~~~~~~ 79 (103)
T PF06422_consen 18 VCAVVGAQPGSTYVSGDDYLEESYGYSYSHRWRNFGILIAFWIFFIVLTLLATEFIKFEKSG 79 (103)
T ss_pred ccCCCCCCCCccEEeHHHHHhhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHhcccCCC
Confidence 57432 23556689999997 7999999999999999999999999999999876654443
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane |
| >PRK13873 conjugal transfer ATPase TrbE; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.5e-05 Score=95.25 Aligned_cols=47 Identities=30% Similarity=0.330 Sum_probs=42.0
Q ss_pred HhcCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q 006505 195 VIHDPKVLILDEPTSGLD-STSALQIIDMLKVMAETRGRTVILSIHQPG 242 (643)
Q Consensus 195 L~~~p~illlDEPtsgLD-~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~ 242 (643)
+-.+|+++++|||+.+|| +..+..+.+.++.+.+. |.+++++||+++
T Consensus 632 ~~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~-~~~~i~~TQ~~~ 679 (811)
T PRK13873 632 FDGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKK-NVSVIFATQSLA 679 (811)
T ss_pred hcCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHc-CCEEEEEECCHH
Confidence 345899999999999999 78899999999999874 899999999986
|
|
| >cd01121 Sms Sms (bacterial radA) DNA repair protein | Back alignment and domain information |
|---|
Probab=98.23 E-value=5.7e-06 Score=89.61 Aligned_cols=143 Identities=22% Similarity=0.309 Sum_probs=83.6
Q ss_pred eece-EEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEE-EECCCcCCchhhc---ccEEEEccCCCCCCCCCHHH
Q 006505 61 LDGV-SCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGST-FVNGSPIDKAQFR---KVSGYVTQRDTLFPLLTVEE 135 (643)
Q Consensus 61 L~~v-s~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I-~~~g~~~~~~~~~---~~i~yv~Q~~~l~~~lTv~E 135 (643)
|+.+ .+=+.+|+++.|.|++|+|||||+..++.......|.+ ++.+++.. .+++ +++++..++..++..
T Consensus 71 LD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~-~qi~~Ra~rlg~~~~~l~l~~e----- 144 (372)
T cd01121 71 LDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESP-EQIKLRADRLGISTENLYLLAE----- 144 (372)
T ss_pred HHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCH-HHHHHHHHHcCCCcccEEEEcc-----
Confidence 4443 35699999999999999999999999987765544454 34444321 1111 111111110000000
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC----CC
Q 006505 136 TLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTS----GL 211 (643)
Q Consensus 136 ~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPts----gL 211 (643)
..++++++ . .--.+|+++++|+-.+ .+
T Consensus 145 ------------------~~le~I~~-----------------------------~--i~~~~~~lVVIDSIq~l~~~~~ 175 (372)
T cd01121 145 ------------------TNLEDILA-----------------------------S--IEELKPDLVIIDSIQTVYSSEL 175 (372)
T ss_pred ------------------CcHHHHHH-----------------------------H--HHhcCCcEEEEcchHHhhcccc
Confidence 00000100 0 0124799999999643 33
Q ss_pred C-----HHHHHHHHHHHHHHHHhCCCEEEEEecCCch-------HHHhhcCEEEEEeCC
Q 006505 212 D-----STSALQIIDMLKVMAETRGRTVILSIHQPGF-------RIVKMFNSILMLANG 258 (643)
Q Consensus 212 D-----~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~-------~i~~~~D~v~~L~~G 258 (643)
| ....+++...|.+++++.|.|++++.|-... .+..++|.|+.++.+
T Consensus 176 ~~~~g~~~qvr~~~~~L~~lak~~~itvilvghvtk~g~~aG~~~leh~vD~Vi~le~~ 234 (372)
T cd01121 176 TSAPGSVSQVRECTAELMRFAKERNIPIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGD 234 (372)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCcccCcccchhhceEEEEEEcC
Confidence 3 2334566777888888889999999884221 256788999988743
|
This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules. |
| >PF12679 ABC2_membrane_2: ABC-2 family transporter protein | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00044 Score=71.39 Aligned_cols=231 Identities=16% Similarity=0.218 Sum_probs=118.5
Q ss_pred HHHHHHHHHhhcChHHHHHHHHHHHH-HHHHHHHHhccCCCC--hhhHHHHHHHH----------------HHHHHHHHH
Q 006505 369 ILTHRFSKNIFRTKELFACRTIQMLI-SGIVLGSIFHNVKDD--LTGTEEKVGLF----------------AFILTFLLS 429 (643)
Q Consensus 369 ~l~~R~~~~~~Rd~~~~~~r~~~~i~-~~li~G~~f~~l~~~--~~~~~~r~g~l----------------f~~~~~~~~ 429 (643)
.+.|+.++..+|+|.....-.+..++ ..+..-..+.....+ ........+.. ++......+
T Consensus 2 ~i~~~E~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 81 (277)
T PF12679_consen 2 AIAKKEFRELFRSRRFWILLIIFLLLLFILAFYPILQAQAQSQAFQTQELIPALENLQSFNFAESAKFFFSIVSFLGPLF 81 (277)
T ss_pred hhHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHhhhhhhhhhhHHHHHHHHHHHH
Confidence 57899999999999887776666555 222222222211111 11111111110 011111111
Q ss_pred HHHhHHHHHHHhhHHHHHHhCCCC--------CChHHHHHHHHHHHHHHHHH---HH-HHhhh-hhhcc-ccccccHHHH
Q 006505 430 CTTEALPIFLQEREILMKETSCGS--------YRVSSYAIANGLVYLPFLLI---LA-ILFSV-PLYWI-VGLNPNLMAF 495 (643)
Q Consensus 430 ~~~~~~~~f~~er~v~~rE~~~~~--------Y~~~~y~la~~l~~lP~~~~---~~-~if~~-i~Y~m-~gl~~~~~~f 495 (643)
..+ .--..+-+|+++|. ++...++++|.++-....++ .. +.+.+ ..++. .|.+.+...+
T Consensus 82 ~~~-------l~~~~ia~E~e~gTi~~lls~PisR~~i~~gK~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (277)
T PF12679_consen 82 AII-------LASDLIAGERERGTIELLLSKPISRSEILLGKFLAAILFSLLLLIALLVGYLLTLVLIAISGIPIDLSSF 154 (277)
T ss_pred HHH-------HHHHHHHhccccCEeeHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHH
Confidence 111 12334455555542 57789999999998877432 11 11111 12222 3445555555
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhcccc-CCCCccchh-----hhhhccChhHHH
Q 006505 496 FHFLLLIWLILY---TANSVVVCFSALVPNFIVGNSVISGVMGSFFLFSGYFI-SKHGIPDYW-----IFMHYISLFKYP 566 (643)
Q Consensus 496 ~~f~~~~~l~~~---~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lfsGf~i-~~~~ip~~~-----~Wl~yiSp~~y~ 566 (643)
+...+...+..+ +..+++.++|+++++...|..+...+............ ..++. .+. ..+.+++|..+
T Consensus 155 ~~~~~~~~~~~~~~~~~~sl~~~~S~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~- 232 (277)
T PF12679_consen 155 LLLLLLFVLLLLAVLVFISLGLLISSLFRSSASAILASLGLLFLLFFLYPIIVFSIANS-EALPWVISPNLSFLSPFSP- 232 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhhhhHhHHHHcChHHH-
Confidence 554443333333 45899999999999988888766554443322222222 11111 122 23466666543
Q ss_pred HHHHHHHhhCCCCccccccCCccccchHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHhh
Q 006505 567 FEQFLINEFSDSDKCLQYIFGKCVVKGEDVLREAGYEEESSWRNLVIMVGFILIYRFISYVILRF 631 (643)
Q Consensus 567 ~eal~~nef~~~~~C~~~~~~~c~~~G~~~L~~~g~~~~~~w~~~~il~~~~~~~~~l~~~~L~~ 631 (643)
++.+......+.. .....|.++++++++.+++..+++..+++
T Consensus 233 ~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~v~l~la~~~F~r 274 (277)
T PF12679_consen 233 FNLLIGSILGGGF-----------------------VWLSTWPSLLILLAYTLVFLALAYYRFQR 274 (277)
T ss_pred HHHHHHHhhcccc-----------------------chhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2222222222110 00456888999999999999998855543
|
|
| >COG1682 TagG ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00054 Score=70.82 Aligned_cols=207 Identities=14% Similarity=0.124 Sum_probs=131.6
Q ss_pred HHHHHHHHHHHHHHHhhcChHH-HHHHHHHHHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHH-HHHH-H-HhHHHHH
Q 006505 363 RFKETIILTHRFSKNIFRTKEL-FACRTIQMLISGIVLGSIFHNVKDDLTGTEEKVGLFAFILTF-LLSC-T-TEALPIF 438 (643)
Q Consensus 363 ~~~Q~~~l~~R~~~~~~Rd~~~-~~~r~~~~i~~~li~G~~f~~l~~~~~~~~~r~g~lf~~~~~-~~~~-~-~~~~~~f 438 (643)
.++-.+.|.+|+.+..+|+... ..--++..+++.++++.+|-.+-... .-+..-.+...+.. .++. + ..+...+
T Consensus 16 ~~~li~~L~~~eik~Ryr~s~LG~~W~~l~P~~~~~~~~~vf~~l~~~~--~~~~~~~l~~G~~~w~f~~~~i~~~~~s~ 93 (263)
T COG1682 16 YRRLIGALVKREIKTRYRRSVLGYLWSLLNPLLMILVYTLVFGALLRSP--GLNFLAYLLAGLILWFFFSEAISEGAGSV 93 (263)
T ss_pred HHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHhCC--CcchHHHHHHHHHHHHHHHHHHHhHHHHh
Confidence 3566778999999999988652 23344444444444444442221111 11111111111111 1111 1 2244556
Q ss_pred HHhhHHHHHHhCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006505 439 LQEREILMKETSCGSYRVSSYAIANGLVYLPFLLILAILFSVPLYWIVGLNPNLMAFFHFLLLIWLILYTANSVVVCFSA 518 (643)
Q Consensus 439 ~~er~v~~rE~~~~~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~~~~~l~~~~~~s~~~~i~~ 518 (643)
.+...++.|-+ .++..+.+++++.++-...+..++....+-|.-+.. +. +.+.......+..+.+.++|.++|.
T Consensus 94 ~~n~~li~k~~----~p~~~~~~~~~~~~~~~~~i~~iiil~~~i~~~~~~-s~-~~l~~~~~l~~l~l~~~g~~l~~a~ 167 (263)
T COG1682 94 VANAALIKKIN----FPPLILPVARTLSRLFNFLIHLIIILIFLIILGVEP-SW-HWLLLLPALLLLILFSVGLGLILAS 167 (263)
T ss_pred hhhHHHHhCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-cH-HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66666665432 388899999999998888777766666655555444 33 3444444556666777788888888
Q ss_pred ccCCHHHHHHHHHHHHHHHHHhhccccCCCCccchhhhhhccChhHHHHHHHHHHhhCC
Q 006505 519 LVPNFIVGNSVISGVMGSFFLFSGYFISKHGIPDYWIFMHYISLFKYPFEQFLINEFSD 577 (643)
Q Consensus 519 ~~~~~~~a~~~~~~~~~~~~lfsGf~i~~~~ip~~~~Wl~yiSp~~y~~eal~~nef~~ 577 (643)
++.-+.--.-+.+.++-+++..+|.+-+.+.+|.-++|+.++||+.+-.|.+=..-+++
T Consensus 168 l~v~fRD~~~i~~~v~~~~f~~sPIi~~~~~~p~~~~~~~~~NP~~~iie~~R~~~~~~ 226 (263)
T COG1682 168 LGVRFRDLGQILGVVLQLLFFLSPIIYPVSNLPEQLRELVLLNPLTHIIESFRAPLLGG 226 (263)
T ss_pred HhhhcccHHHHHHHHHHHHHHhCceeeehhhccHHHHHHHHHCcHHHHHHHHHHHHhCC
Confidence 77555544455566677788899999999999999999999999999999886655554
|
|
| >PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=98.19 E-value=2.5e-05 Score=84.43 Aligned_cols=80 Identities=21% Similarity=0.320 Sum_probs=65.3
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC-----CHHHHHH----------HHHHHHHHHHhCCCEEEEEecCCch
Q 006505 179 RGISGGERRRVSIGFDVIHDPKVLILDEPTSGL-----DSTSALQ----------IIDMLKVMAETRGRTVILSIHQPGF 243 (643)
Q Consensus 179 ~~LSGGerqRv~ia~aL~~~p~illlDEPtsgL-----D~~~~~~----------i~~~L~~l~~~~g~tvi~~~H~~~~ 243 (643)
..=||-.-|=.+|..||=..+++||+||=||+- |...+.- +.+.++++.++.|.+.|+++--..
T Consensus 321 ~~ASGSTSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Ggsg- 399 (448)
T PF09818_consen 321 ENASGSTSQAANIMEALEAGARLLLIDEDTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVSTILVVGGSG- 399 (448)
T ss_pred cCCCchHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCceEEEEeccch-
Confidence 357999999999999999999999999999964 4444433 467788887778998888886655
Q ss_pred HHHhhcCEEEEEeCCe
Q 006505 244 RIVKMFNSILMLANGS 259 (643)
Q Consensus 244 ~i~~~~D~v~~L~~G~ 259 (643)
+.++.+|+|++|++=+
T Consensus 400 dy~~vAD~Vi~Md~Y~ 415 (448)
T PF09818_consen 400 DYFDVADRVIMMDEYR 415 (448)
T ss_pred hhHhhCCEEEEecCcc
Confidence 5889999999998744
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases. |
| >TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00088 Score=68.45 Aligned_cols=219 Identities=12% Similarity=0.133 Sum_probs=122.9
Q ss_pred HHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhcc---CC-CChhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhH
Q 006505 368 IILTHRFSKNIFRTKELFACRTIQMLISGIVLGSIFHN---VK-DDLTGTEEKVGLFAFILTFLLSCTTEALPIFLQERE 443 (643)
Q Consensus 368 ~~l~~R~~~~~~Rd~~~~~~r~~~~i~~~li~G~~f~~---l~-~~~~~~~~r~g~lf~~~~~~~~~~~~~~~~f~~er~ 443 (643)
+.+.||.++...|.|.....-.+..++.|+.. ..|.+ .. .+.++.+.-.+.. ...+......-+ -.
T Consensus 2 ~~i~~kEl~~~f~sp~~yv~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~f~~~--~~~~~~~~p~l~-------~~ 71 (240)
T TIGR03518 2 KAIFKKEFNSFFSSPIGYLVIAVFLLANGLFL-WVFPGDFNILDYGYADLTPFFSLA--PWVFLFLIPAIT-------MR 71 (240)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH-HHHhhhhhHHhcCcchHHHHHHHH--HHHHHHHHHHHH-------HH
Confidence 46889999999999998887777777777442 22211 11 1112222211111 111111111112 24
Q ss_pred HHHHHhCCCCC--------ChHHHHHHHHHHHHHHHHHHHH---Hhhhhhhcccc--ccccHHHHHHHHHHHHHHHHHHH
Q 006505 444 ILMKETSCGSY--------RVSSYAIANGLVYLPFLLILAI---LFSVPLYWIVG--LNPNLMAFFHFLLLIWLILYTAN 510 (643)
Q Consensus 444 v~~rE~~~~~Y--------~~~~y~la~~l~~lP~~~~~~~---if~~i~Y~m~g--l~~~~~~f~~f~~~~~l~~~~~~ 510 (643)
.+.+||++|.. +...+.++|.++-+-..++..+ ++....++... -..+...++...+..++...+..
T Consensus 72 ~ia~Er~~GTle~Llt~Pvs~~~ivlgK~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 151 (240)
T TIGR03518 72 SFAEERKLGTLELLLTRPISDWQIILGKYLGSLTLVILALLPTLLYVFTIYQLGNPVGNLDIGSTFGSYIGLLLLGSVYT 151 (240)
T ss_pred HHHHHHHcCHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHH
Confidence 44556666653 4678899999988655544332 22222222211 12245555555555566677888
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHHHhhccccCCCCc--cchhhhhhccChhHHHHHHHHHHhhCCCCccccccCCc
Q 006505 511 SVVVCFSALVPNFIVGNSVISGVMGSFFLFSGYFISKHGI--PDYWIFMHYISLFKYPFEQFLINEFSDSDKCLQYIFGK 588 (643)
Q Consensus 511 s~~~~i~~~~~~~~~a~~~~~~~~~~~~lfsGf~i~~~~i--p~~~~Wl~yiSp~~y~~eal~~nef~~~~~C~~~~~~~ 588 (643)
++|.++|+++.+...|..++..+. +.++.|+.. ..++ |++.+|+.|+||..|-.+.. ++.
T Consensus 152 aig~~iSsl~~~q~~a~~~~~~~~--~~l~~~~~~-l~~~~~~~~~~~l~~~sp~~~~~~~~-----~g~---------- 213 (240)
T TIGR03518 152 AIGLFASSLTENQIVAFIIAVFLC--FLFYFGFDG-LASLLWGGSAYTISELGLSYHYESIS-----RGV---------- 213 (240)
T ss_pred HHHHHHHHHhchHHHHHHHHHHHH--HHHHHHHHH-HhhhcchhHHHHHHHcCHHHHHHHHH-----cCc----------
Confidence 999999999999888765443322 222223221 2333 78899999999977743322 111
Q ss_pred cccchHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHhh
Q 006505 589 CVVKGEDVLREAGYEEESSWRNLVIMVGFILIYRFISYVILRF 631 (643)
Q Consensus 589 c~~~G~~~L~~~g~~~~~~w~~~~il~~~~~~~~~l~~~~L~~ 631 (643)
. .|.++...+.+.+++..++...++.
T Consensus 214 --i---------------~~~~~v~~~~~~~~~l~l~~~~~~~ 239 (240)
T TIGR03518 214 --I---------------DSRDVIYFLSITVLFLALTKLQLKS 239 (240)
T ss_pred --c---------------cHhHHHHHHHHHHHHHHHHHHHHhc
Confidence 0 1467777777777777777666654
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.9e-06 Score=85.94 Aligned_cols=74 Identities=26% Similarity=0.370 Sum_probs=52.1
Q ss_pred ecCeEEEEECCCCCCHHHHHHHHhcCCCCCccE----EEECCCcCCchhhcccEEEEccCCCCCCCCCHHHHHHHHHHhc
Q 006505 69 KPWEILAIVGPSGAGKSSLLEILAGKLTPQSGS----TFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLR 144 (643)
Q Consensus 69 ~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~----I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~ 144 (643)
.+..+++|.||||||||||.+.|++++++.+|. |.+++..... ..+...+++++.+ .++..++.+.+.+...++
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~~~-~~~~~~g~~~~~~-~~~~~d~~~~~~~l~~l~ 108 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLDN-AVLDAHGLRPRKG-APETFDVAGLAALLRRLR 108 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccCCH-HHHHhcccccccC-CCCCCCHHHHHHHHHHHH
Confidence 346799999999999999999999999999998 5556543322 2333457776543 345667777666544443
|
|
| >PRK06315 type III secretion system ATPase; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=4.6e-06 Score=91.58 Aligned_cols=108 Identities=19% Similarity=0.218 Sum_probs=71.1
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCC-CccEEEECC---CcCCc---hhhc---ccEEEE-----
Q 006505 57 VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTP-QSGSTFVNG---SPIDK---AQFR---KVSGYV----- 121 (643)
Q Consensus 57 ~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~-~~G~I~~~g---~~~~~---~~~~---~~i~yv----- 121 (643)
...+++++ +.+.+||.++|+|+||+|||||+++|+|..++ +.|.|.+.| +++.. ..++ ...+++
T Consensus 151 Gi~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats 229 (442)
T PRK06315 151 GVRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTS 229 (442)
T ss_pred eEEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCC
Confidence 35688988 99999999999999999999999999998844 457777755 44421 1111 234455
Q ss_pred ccCCC--CCCCCCHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHcCCh
Q 006505 122 TQRDT--LFPLLTVEETLMFSAKLRLRL--PQAQLRARVKSLVKELGLE 166 (643)
Q Consensus 122 ~Q~~~--l~~~lTv~E~l~~~~~~~~~~--~~~~~~~~v~~~l~~lgl~ 166 (643)
+|++. +.+.+ +...+.-..+.+... ...+...++.+++++++|.
T Consensus 230 ~q~p~~rlnp~~-va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~ 277 (442)
T PRK06315 230 DQSSQLRLNAAY-VGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLA 277 (442)
T ss_pred CCCHHHHhhHHH-HHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcC
Confidence 78752 34433 444444333322111 2345567888899998884
|
|
| >PRK08149 ATP synthase SpaL; Validated | Back alignment and domain information |
|---|
Probab=98.14 E-value=3.4e-06 Score=92.31 Aligned_cols=69 Identities=20% Similarity=0.262 Sum_probs=56.9
Q ss_pred cccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCc---cEEEECCCcCCc--h-----hhcccEEEEccCC
Q 006505 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQS---GSTFVNGSPIDK--A-----QFRKVSGYVTQRD 125 (643)
Q Consensus 56 ~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~---G~I~~~g~~~~~--~-----~~~~~i~yv~Q~~ 125 (643)
.+..+++++ +.+.+||.++|+|+||+|||||+++|++...++. |.|-.+|+++.. . ...+++++|....
T Consensus 137 tGi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~s 215 (428)
T PRK08149 137 TGVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATS 215 (428)
T ss_pred CCcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECC
Confidence 345799999 9999999999999999999999999999998886 999999988743 1 1235677777653
|
|
| >PRK10078 ribose 1,5-bisphosphokinase; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=2.3e-06 Score=83.79 Aligned_cols=37 Identities=32% Similarity=0.479 Sum_probs=31.7
Q ss_pred CeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCC
Q 006505 71 WEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPID 110 (643)
Q Consensus 71 Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~ 110 (643)
|++++|+||||||||||+++|++...+ .+.+++..+.
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~~ 38 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYIT 38 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEECC
Confidence 789999999999999999999998765 5777776554
|
|
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.6e-06 Score=68.89 Aligned_cols=38 Identities=34% Similarity=0.602 Sum_probs=30.8
Q ss_pred eeceEEEEec-CeEEEEECCCCCCHHHHHHHHhcCCCCC
Q 006505 61 LDGVSCKAKP-WEILAIVGPSGAGKSSLLEILAGKLTPQ 98 (643)
Q Consensus 61 L~~vs~~i~~-Ge~~aIlG~nGaGKSTLL~~l~g~~~~~ 98 (643)
.++.++++.+ |++++|.|||||||||||++|.=.+-+.
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~~ 50 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYGN 50 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 4556777776 5699999999999999999998666553
|
|
| >TIGR02903 spore_lon_C ATP-dependent protease, Lon family | Back alignment and domain information |
|---|
Probab=98.11 E-value=9.1e-06 Score=93.77 Aligned_cols=110 Identities=19% Similarity=0.273 Sum_probs=71.1
Q ss_pred cCeEEEEECCCCCCHHHHHHHHhcCCCCCcc--------EEEECCCcCCchhhcccEEEEccCCCCCCCCCHHHHHHHHH
Q 006505 70 PWEILAIVGPSGAGKSSLLEILAGKLTPQSG--------STFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTVEETLMFSA 141 (643)
Q Consensus 70 ~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G--------~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~ 141 (643)
..+.++|+||||+|||||.+++.+..++..| -|.+||..+.. ..+. + ++-.+.
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~-d~~~----------------i-~~~llg- 234 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRW-DPRE----------------V-TNPLLG- 234 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccC-CHHH----------------H-hHHhcC-
Confidence 3457999999999999999999998765433 36666544310 0000 0 011111
Q ss_pred HhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH
Q 006505 142 KLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIID 221 (643)
Q Consensus 142 ~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~ 221 (643)
...+...+.+.+.++..|+.+.. +..+..+||| +|+||| +..||+..+..+.+
T Consensus 235 -----~~~~~~~~~a~~~l~~~gl~~~~-----~g~v~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~ 287 (615)
T TIGR02903 235 -----SVHDPIYQGARRDLAETGVPEPK-----TGLVTDAHGG----------------VLFIDE-IGELDPLLQNKLLK 287 (615)
T ss_pred -----CccHHHHHHHHHHHHHcCCCchh-----cCchhhcCCC----------------eEEEec-cccCCHHHHHHHHH
Confidence 01111123345567778876554 2355678888 999999 79999999999998
Q ss_pred HHHH
Q 006505 222 MLKV 225 (643)
Q Consensus 222 ~L~~ 225 (643)
.|++
T Consensus 288 ~Le~ 291 (615)
T TIGR02903 288 VLED 291 (615)
T ss_pred HHhh
Confidence 8864
|
Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC. |
| >TIGR00554 panK_bact pantothenate kinase, bacterial type | Back alignment and domain information |
|---|
Probab=98.11 E-value=2.8e-06 Score=88.74 Aligned_cols=72 Identities=19% Similarity=0.232 Sum_probs=52.4
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCC--CCccEEEECCCcCC--chhhcccEEEEccCCCCCCCCCHHHHHHHHHHhc
Q 006505 72 EILAIVGPSGAGKSSLLEILAGKLT--PQSGSTFVNGSPID--KAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLR 144 (643)
Q Consensus 72 e~~aIlG~nGaGKSTLL~~l~g~~~--~~~G~I~~~g~~~~--~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~ 144 (643)
.++||.||||||||||.++|.+++. |++|+|.+-+.+-- ....++..++. |+..+++.+++.+.+.+-..++
T Consensus 63 ~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~~l~~~g~~-~~~g~P~s~D~~~l~~~L~~Lk 138 (290)
T TIGR00554 63 YIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQVLKERNLM-KKKGFPESYDMHRLVKFLSDLK 138 (290)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHHHHHHcCCc-cccCCChhccHHHHHHHHHHHH
Confidence 6999999999999999999999987 67888776444321 12223345543 6666778888888887766554
|
Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model. |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 643 | ||||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 1e-17 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 2e-17 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 2e-17 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 8e-17 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 1e-16 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 1e-16 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 1e-16 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 1e-16 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 2e-16 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 4e-16 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 7e-16 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 7e-16 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 7e-16 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 9e-16 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 2e-15 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 2e-15 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 2e-15 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 3e-15 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 4e-15 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 4e-15 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 4e-15 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 7e-15 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 7e-15 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 1e-14 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 1e-14 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 2e-14 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 4e-14 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 6e-14 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 6e-14 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 1e-13 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 2e-13 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-13 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 3e-13 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 3e-13 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 4e-13 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 4e-13 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 7e-13 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 7e-13 | ||
| 1g29_1 | 372 | Malk Length = 372 | 2e-12 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 3e-12 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 6e-12 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 8e-12 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 9e-12 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 1e-11 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 2e-11 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-11 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 3e-11 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 3e-11 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 1e-10 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 4e-10 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 2e-09 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 3e-09 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 6e-09 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 7e-09 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 7e-09 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 7e-09 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 2e-08 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 3e-08 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 3e-08 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 4e-08 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 4e-08 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 5e-08 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 7e-08 | ||
| 4fwi_B | 334 | Crystal Structure Of The Nucleotide-binding Domain | 7e-08 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 1e-07 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 2e-07 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 2e-07 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 2e-07 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 4e-07 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 5e-07 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 5e-07 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 6e-07 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 9e-07 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 1e-06 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 1e-06 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 2e-06 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 5e-06 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 5e-06 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 5e-06 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 6e-06 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 7e-06 | ||
| 4dbl_C | 249 | Crystal Structure Of E159q Mutant Of Btucdf Length | 8e-06 | ||
| 3j16_B | 608 | Models Of Ribosome-Bound Dom34p And Rli1p And Their | 9e-06 | ||
| 4fi3_C | 249 | Structure Of Vitamin B12 Transporter Btucd-F In A N | 1e-05 | ||
| 2pjz_A | 263 | The Crystal Structure Of Putative Cobalt Transport | 4e-05 | ||
| 2qi9_C | 249 | Abc-Transporter Btucd In Complex With Its Periplasm | 5e-05 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 6e-05 | ||
| 1l7v_C | 249 | Bacterial Abc Transporter Involved In B12 Uptake Le | 7e-05 | ||
| 1sgw_A | 214 | Putative Abc Transporter (Atp-Binding Protein) From | 8e-05 |
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249 | Back alignment and structure |
|
| >pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their Ribosomal Binding Partners Length = 608 | Back alignment and structure |
|
| >pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A Nucleotide-Bound State Length = 249 | Back alignment and structure |
|
| >pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp- Binding Protein (cbio-2), St1066 Length = 263 | Back alignment and structure |
|
| >pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic Binding Protein Btuf Length = 249 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake Length = 249 | Back alignment and structure |
|
| >pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From Pyrococcus Furiosus Pfu-867808-001 Length = 214 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 643 | |||
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 8e-46 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 1e-43 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 3e-39 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 4e-35 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 9e-35 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 2e-34 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 6e-32 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 2e-29 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 2e-29 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 5e-26 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 3e-29 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 2e-28 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 4e-24 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 2e-28 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 8e-27 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 6e-28 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 1e-27 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 6e-26 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 2e-25 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 1e-24 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 3e-24 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 6e-23 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 6e-23 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 7e-23 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 2e-22 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 4e-22 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 6e-22 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 8e-22 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 9e-22 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 3e-21 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 4e-21 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 2e-20 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 2e-18 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 7e-20 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 9e-20 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 1e-19 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 2e-19 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 4e-19 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 7e-19 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 1e-18 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 2e-17 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 2e-17 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 1e-16 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 2e-16 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 2e-16 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 3e-16 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 7e-15 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 2e-14 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 8e-14 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 9e-09 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 8e-07 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 2e-13 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-13 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 6e-04 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 1e-11 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 2e-09 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 2e-08 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 1e-06 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 6e-05 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 5e-04 |
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 162 bits (412), Expect = 8e-46
Identities = 54/186 (29%), Positives = 96/186 (51%), Gaps = 9/186 (4%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK--AQ 113
G + +L G+S + + EI ++GP+GAGK++ L I++ + P SG V G + + +
Sbjct: 26 GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHE 85
Query: 114 FRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARV 173
RK+ Y+ + + + E L F A +++ V+ + GL
Sbjct: 86 VRKLISYLPEEAGAYRNMQGIEYLRFVAGFY-ASSSSEIEEMVERATEIAGLGEKI---- 140
Query: 174 GDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRT 233
DRV S G R++ I ++ +P++ ILDEPTSGLD +A ++ +LK ++ G T
Sbjct: 141 -KDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ-EGLT 198
Query: 234 VILSIH 239
+++S H
Sbjct: 199 ILVSSH 204
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 154 bits (392), Expect = 1e-43
Identities = 37/204 (18%), Positives = 88/204 (43%), Gaps = 16/204 (7%)
Query: 58 RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKV 117
+ VL+ ++ + ++ GP+G GK++LL+ ++ L P G NG PI K +
Sbjct: 22 KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKV--KGK 79
Query: 118 SGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDR 177
++ + + ++VE+ L A L + + + ++ + + + +
Sbjct: 80 IFFLPEEIIVPRKISVEDYLKAVASLY-GVKVN--KNEIMDALESVEVLDL------KKK 130
Query: 178 VRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILS 237
+ +S G RRV + ++ + ++ +LD+P +D S +++ + + + +G +I S
Sbjct: 131 LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISS 190
Query: 238 IHQPGFRIVKMFNSILMLANGSVL 261
+ + L S
Sbjct: 191 RE-----ELSYCDVNENLHKYSTK 209
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 145 bits (367), Expect = 3e-39
Identities = 53/221 (23%), Positives = 100/221 (45%), Gaps = 17/221 (7%)
Query: 58 RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-----A 112
+ +L +S + + + G +GAGK++LL IL SG+ + G K
Sbjct: 34 KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAE 93
Query: 113 QFRKVSGYVTQR--DTLFPLLTVEETLM---FSAKLRLRLPQAQLRARVKSLVKELGLEH 167
R+ G+V+ + V + ++ F + + ++R L+K +G+
Sbjct: 94 TVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSA 153
Query: 168 VAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMA 227
A + +S GE++RV I ++ P+VLILDEP +GLD + ++ +L ++
Sbjct: 154 KA-----QQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLS 208
Query: 228 ET-RGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVD 267
++ +I H I F+ IL+L +G + G V+
Sbjct: 209 DSYPTLAMIYVTHFIEE-ITANFSKILLLKDGQSIQQGAVE 248
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 133 bits (336), Expect = 4e-35
Identities = 72/236 (30%), Positives = 123/236 (52%), Gaps = 20/236 (8%)
Query: 58 RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-----A 112
L G++ K E+ AI+G +G GKS+L + G L P SG + PID
Sbjct: 21 THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIM 80
Query: 113 QFRKVSGYVTQR--DTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAM 170
+ R+ G V Q + LF +V + + F A ++LP+ ++R RV + +K G+EH+
Sbjct: 81 KLRESIGIVFQDPDNQLF-SASVYQDVSFGAV-NMKLPEDEIRKRVDNALKRTGIEHLK- 137
Query: 171 ARVGDDRVRGISGGERRRVSIGFDVIH-DPKVLILDEPTSGLDSTSALQIIDMLKVMAET 229
D +S G+++RV+I V+ +PKVLILDEPT+GLD +I+ +L M +
Sbjct: 138 ----DKPTHCLSFGQKKRVAIA-GVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKE 192
Query: 230 RGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTV-DLLSVS--LRMMGLQLPM 282
G T+I++ H + +++ ++ G V+ G ++ + +R + L+LP
Sbjct: 193 LGITIIIATHDIDI-VPLYCDNVFVMKEGRVILQGNPKEVFAEKEVIRKVNLRLPR 247
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 131 bits (332), Expect = 9e-35
Identities = 52/228 (22%), Positives = 92/228 (40%), Gaps = 36/228 (15%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFR 115
L +S + + EIL +VGP+GAGKS+LL +AG +T GS G P++
Sbjct: 11 AESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSGKGSIQFAGQPLEAWSAT 69
Query: 116 KVS---GYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMAR 172
K++ Y++Q+ T V L + + + + + L L+
Sbjct: 70 KLALHRAYLSQQQTPPFATPVWHYLTLH-----QHDKTR-TELLNDVAGALALDDKL--- 120
Query: 173 VGDDRVRGISGGERRRVSI-------GFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKV 225
+SGGE +RV + ++L+LDEP + LD + +L
Sbjct: 121 --GRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSA 178
Query: 226 MAETRGRTVILSIHQPGF------RIVKMFNSILMLANGSVLHHGTVD 267
+++ +G +++S H R +L G +L G +
Sbjct: 179 LSQ-QGLAIVMSSHDLNHTLRHAHRAW-------LLKGGKMLASGRRE 218
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 2e-34
Identities = 53/219 (24%), Positives = 97/219 (44%), Gaps = 26/219 (11%)
Query: 55 DGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQF 114
+ ++ +ILA++G +G GKS+LL++L G P G V +
Sbjct: 15 QAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV---------Y 65
Query: 115 RKVSGYVTQR-DTLFPLLTVEETLMF--SAKL-RLRLPQAQLRARVKSLVKELGLEHVAM 170
+ + G+V Q + F +V + ++ S + P++ + L L H+A
Sbjct: 66 QSI-GFVPQFFSSPFAY-SVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAK 123
Query: 171 ARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETR 230
+SGG+R+ + I + + K+++LDEPTS LD + ++ +L +A+++
Sbjct: 124 REFTS-----LSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQ 178
Query: 231 GRTVILSIHQPG--FRIVKMFNSILMLANGSVLHHGTVD 267
TV+ + HQP I N L+L N G
Sbjct: 179 NMTVVFTTHQPNQVVAI---ANKTLLL-NKQNFKFGETR 213
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 123 bits (312), Expect = 6e-32
Identities = 62/214 (28%), Positives = 104/214 (48%), Gaps = 18/214 (8%)
Query: 58 RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKV 117
++ L+ VS E L + G +G+GKS+LL+I+AG + P SG +G + R+
Sbjct: 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRN 79
Query: 118 SGYVTQRDTLFP-----LLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMAR 172
G Q +P V + + F+ ++ P VK ++ +GL+ +
Sbjct: 80 IGIAFQ----YPEDQFFAERVFDEVAFA--VKNFYPDRDPVPLVKKAMEFVGLDFDSFK- 132
Query: 173 VGDDRVRGISGGERRRVSIGFDVI-HDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRG 231
D +SGGE+RRV+I VI H+P +LILDEP GLD ++ +++ G
Sbjct: 133 --DRVPFFLSGGEKRRVAIA-SVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKT-LG 188
Query: 232 RTVILSIHQPGFRIVKMFNSILMLANGSVLHHGT 265
+TVIL H ++ + +++L G + GT
Sbjct: 189 KTVILISHDIET-VINHVDRVVVLEKGKKVFDGT 221
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 115 bits (291), Expect = 2e-29
Identities = 61/204 (29%), Positives = 101/204 (49%), Gaps = 21/204 (10%)
Query: 59 RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKL-TPQSGSTFVNGSPIDK------ 111
+L G+S K E ++I+G SG+GKS+LL IL G L P G F+ G +D
Sbjct: 18 EILKGISLSVKKGEFVSIIGASGSGKSTLLYIL-GLLDAPTEGKVFLEGKEVDYTNEKEL 76
Query: 112 AQFRKVS-GYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAM 170
+ R G+V Q L P LT E ++ P+ + + R + L+ ELGL
Sbjct: 77 SLLRNRKLGFVFQFHYLIPELTALENVIVPMLKM-GKPKKEAKERGEYLLSELGLGDKL- 134
Query: 171 ARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETR 230
+ +SGGE++RV+I + ++P +L DEPT LDS + +++D+ + E
Sbjct: 135 ----SRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINE-G 189
Query: 231 GRTVILSIHQPGF-----RIVKMF 249
G ++++ H+ R ++M
Sbjct: 190 GTSIVMVTHERELAELTHRTLEMK 213
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 122 bits (308), Expect = 2e-29
Identities = 54/248 (21%), Positives = 101/248 (40%), Gaps = 39/248 (15%)
Query: 7 CEIEAIGINYNVYTQKKET--PFKIFTKNQLNDDH----HAQEELSKLEEAADSDGV--- 57
+ Y ++++ K T F + L D++ + +KL E D +
Sbjct: 299 HVVYGEPGVYGIFSKPKGTRNGINEFLQGYLKDENVRFRPYEIRFTKLSERVDVERETLV 358
Query: 58 ----------RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGS 107
L+ + + E++ IVGP+G GK++ +++LAG P G + +
Sbjct: 359 EYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLT 418
Query: 108 PIDKAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEH 167
K Q+ K TV E + S +L + + +K LG+
Sbjct: 419 VAYKPQYIKAE----------YEGTVYE--LLSKIDSSKLNSNFYKTEL---LKPLGIID 463
Query: 168 VAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMA 227
+ D V +SGGE +RV+I ++ D + +LDEP++ LD L + ++ +
Sbjct: 464 LY-----DRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLM 518
Query: 228 ETRGRTVI 235
E +T +
Sbjct: 519 EKNEKTAL 526
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 112 bits (281), Expect = 5e-26
Identities = 48/196 (24%), Positives = 87/196 (44%), Gaps = 23/196 (11%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQ------SGSTFVNGSPI 109
GV + K ++ IVGP+G GK++ ++ILAG+L P S +
Sbjct: 102 GVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRG 161
Query: 110 DKAQ--FRKVSGYVTQRDTLFPLL----TVEETLMFSAKLRLRLPQAQLRARVKSLVKEL 163
++ Q F ++ + P++ K+R L + + + +VKEL
Sbjct: 162 NELQNYFERLKN-----GEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKEL 216
Query: 164 GLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDML 223
LE+V + +SGGE +RV+I ++ DEP+S LD L++ ++
Sbjct: 217 ELENVLDRELHQ-----LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVI 271
Query: 224 KVMAETRGRTVILSIH 239
+ +A G+ V++ H
Sbjct: 272 RRLAN-EGKAVLVVEH 286
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 3e-29
Identities = 61/207 (29%), Positives = 104/207 (50%), Gaps = 24/207 (11%)
Query: 59 RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKL-TPQSGSTFVNGSPIDK------ 111
L V+ K E ++I+GPSG+GKS++L I+ G L P G +++ +
Sbjct: 19 YALKNVNLNIKEGEFVSIMGPSGSGKSTMLNII-GCLDKPTEGEVYIDNIKTNDLDDDEL 77
Query: 112 AQFR-KVSGYVTQRDTLFPLLT----VEETLMFSAKLRLRLPQAQLRARVKSLVKELGLE 166
+ R G+V Q+ L PLLT VE L+F R + + R R +K LE
Sbjct: 78 TKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKY--RGAMSGEERRKRALECLKMAELE 135
Query: 167 HVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVM 226
R + + +SGG+++RV+I + ++P +++ D+PT LDS + +I+ +LK +
Sbjct: 136 E----RFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKL 191
Query: 227 AETRGRTVILSIHQPGF-----RIVKM 248
E G+TV++ H RI+ +
Sbjct: 192 NEEDGKTVVVVTHDINVARFGERIIYL 218
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 118 bits (299), Expect = 2e-28
Identities = 44/178 (24%), Positives = 81/178 (45%), Gaps = 20/178 (11%)
Query: 58 RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKV 117
L+ + K E++ IVGP+G GK++ +++LAG P G + + K Q+ K
Sbjct: 299 SFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKA 358
Query: 118 SGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDR 177
T++ LL+ ++ + L+K LG+ + D
Sbjct: 359 D----YEGTVYELLS-----------KIDASKLNSNFYKTELLKPLGIIDLY-----DRE 398
Query: 178 VRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVI 235
V +SGGE +RV+I ++ D + +LDEP++ LD L + ++ + E +T +
Sbjct: 399 VNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTAL 456
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 4e-24
Identities = 52/212 (24%), Positives = 95/212 (44%), Gaps = 31/212 (14%)
Query: 43 EELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQ---- 98
E+L + + GV + K ++ IVGP+G GKS+ ++ILAG+L P
Sbjct: 21 EQLEE--DCVHRYGVNAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGD 78
Query: 99 --SGSTFVNGSPIDKAQ--FRKVSGYVTQRDTLFPL-------LTVEETLMFSAKLRLRL 147
S + ++ Q F K+ + P+ L + K+ L
Sbjct: 79 NDSWDGVIRAFRGNELQNYFEKLKN-----GEIRPVVKPQYVDLIPK---AVKGKVIELL 130
Query: 148 PQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEP 207
+A +++ +VK L LE+V + ++ +SGGE +RV+I ++ + DEP
Sbjct: 131 KKADETGKLEEVVKALELENVL-----EREIQHLSGGELQRVAIAAALLRNATFYFFDEP 185
Query: 208 TSGLDSTSALQIIDMLKVMAETRGRTVILSIH 239
+S LD L ++ ++E G++V++ H
Sbjct: 186 SSYLDIRQRLNAARAIRRLSE-EGKSVLVVEH 216
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 2e-28
Identities = 42/177 (23%), Positives = 73/177 (41%), Gaps = 18/177 (10%)
Query: 59 RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVS 118
L + +AK EI+ I+GP+G GK++ IL G++T GS +
Sbjct: 282 FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQIL--------- 332
Query: 119 GYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRV 178
Y QR TV++ L ++K L + + K L L + + V
Sbjct: 333 SYKPQRIFPNYDGTVQQYLENASKDALSTSSW----FFEEVTKRLNLHRLL-----ESNV 383
Query: 179 RGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVI 235
+SGGE +++ I + + + +LD+P+S LD + +K + R
Sbjct: 384 NDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTF 440
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 113 bits (286), Expect = 8e-27
Identities = 34/182 (18%), Positives = 75/182 (41%), Gaps = 20/182 (10%)
Query: 69 KPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQR---- 124
K IL ++G +G GK+++L+ILAG++ P G N ++ G
Sbjct: 23 KNNTILGVLGKNGVGKTTVLKILAGEIIPNFGD--PNSKVGKDEVLKRFRGKEIYNYFKE 80
Query: 125 ---DTLFPLLTVEET----LMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDR 177
+ L + ++ + L + R + + + L + ++ +
Sbjct: 81 LYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLW-----NKD 135
Query: 178 VRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILS 237
+SGG +R+ + ++ + V I D+P+S LD + + ++ + + + VI+
Sbjct: 136 ANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK--NKYVIVV 193
Query: 238 IH 239
H
Sbjct: 194 DH 195
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 6e-28
Identities = 47/183 (25%), Positives = 84/183 (45%), Gaps = 18/183 (9%)
Query: 58 RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKV 117
R L+ ++ + E + I+GP+G+GK++LL ++G L P SG+ F+NG + K R
Sbjct: 18 RFSLENINLEVNG-EKVIILGPNGSGKTTLLRAISG-LLPYSGNIFINGMEVRK--IRNY 73
Query: 118 SGYVTQRDTLFPL-LTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDD 176
Y T + + +TV + + +L+ L R ++K L L + R
Sbjct: 74 IRYSTNLPEAYEIGVTVNDIVYLYEELK-GLD----RDLFLEMLKALKLGEEILRR---- 124
Query: 177 RVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVIL 236
++ +S G+ V + P+++ LDEP +D+ I +K G+ IL
Sbjct: 125 KLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEY----GKEGIL 180
Query: 237 SIH 239
H
Sbjct: 181 VTH 183
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 1e-27
Identities = 41/178 (23%), Positives = 74/178 (41%), Gaps = 20/178 (11%)
Query: 58 RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKV 117
VL+ + EIL ++G +G GK++L+++LAG L P G + K Q
Sbjct: 365 DFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQK--- 421
Query: 118 SGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDR 177
TV + + + PQ +VK L ++ + D
Sbjct: 422 IAPKFP-------GTVRQLFFKKIRGQFLNPQ-----FQTDVVKPLRIDDII-----DQE 464
Query: 178 VRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVI 235
V+ +SGGE +RV+I + + ++DEP++ LDS + +++ +T
Sbjct: 465 VQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAF 522
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 6e-26
Identities = 49/185 (26%), Positives = 79/185 (42%), Gaps = 26/185 (14%)
Query: 72 EILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSP---IDKAQFRKVSGYVT------ 122
++L +VG +G GKS+ L+ILAGK P G I + ++ Y T
Sbjct: 104 QVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDD 163
Query: 123 -------QRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGD 175
Q P ++ + +L L+L + VK +K L LE+V
Sbjct: 164 IKAIIKPQYVDNIPR-AIKGPVQKVGEL-LKLRMEKSPEDVKRYIKILQLENVL------ 215
Query: 176 DR-VRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTV 234
R + +SGGE +R +IG + + V + DEP+S LD L +++ + + V
Sbjct: 216 KRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLA-PTKYV 274
Query: 235 ILSIH 239
I H
Sbjct: 275 ICVEH 279
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 2e-25
Identities = 52/163 (31%), Positives = 83/163 (50%), Gaps = 13/163 (7%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQF- 114
VL+ +S P EIL I+G SG GK++LL LAG P SG ++G I
Sbjct: 15 QNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTN 74
Query: 115 -----RKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVA 169
R++ GY+ Q LFP LTV + + + AQ R R++++ LE
Sbjct: 75 LPVRERRL-GYLVQEGVLFPHLTVYRNIAYGLGNG-KGRTAQERQRIEAM-----LELTG 127
Query: 170 MARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLD 212
++ + +SGG+++R ++ + DP++++LDEP S LD
Sbjct: 128 ISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALD 170
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 1e-24
Identities = 48/160 (30%), Positives = 88/160 (55%), Gaps = 9/160 (5%)
Query: 55 DGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK--A 112
G R + GVS + + E++ ++GPSG+GK+++L ++AG P G ++ G +
Sbjct: 25 PGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP 84
Query: 113 QFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMAR 172
Q R V G V Q LF +TV + + F + + R+P+ ++ ARV+ L L + +
Sbjct: 85 QKRNV-GLVFQNYALFQHMTVYDNVSFGLREK-RVPKDEMDARVREL-----LRFMRLES 137
Query: 173 VGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLD 212
+ +SGG+++RV++ + P+VL+ DEP + +D
Sbjct: 138 YANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAID 177
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 103 bits (260), Expect = 3e-24
Identities = 59/219 (26%), Positives = 106/219 (48%), Gaps = 15/219 (6%)
Query: 55 DGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKA-- 112
+ L+ VS +I ++G SGAGKS+L+ + P GS V+G +
Sbjct: 38 TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSE 97
Query: 113 ----QFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHV 168
+ R+ G + Q L TV + +L P+ +++ RV L+ +GL
Sbjct: 98 SELTKARRQIGMIFQHFNLLSSRTVFGNVALPLEL-DNTPKDEVKRRVTELLSLVGLGDK 156
Query: 169 AMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAE 228
D +SGG+++RV+I + +PKVL+ D+ TS LD + I+++LK +
Sbjct: 157 H-----DSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINR 211
Query: 229 TRGRTVILSIHQPGFRIVK-MFNSILMLANGSVLHHGTV 266
G T++L H+ +VK + + + +++NG ++ TV
Sbjct: 212 RLGLTILLITHE--MDVVKRICDCVAVISNGELIEQDTV 248
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 97.2 bits (243), Expect = 6e-23
Identities = 65/224 (29%), Positives = 108/224 (48%), Gaps = 28/224 (12%)
Query: 55 DGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQ- 113
D ++L +S +A+P I+A GPSG GKS++ +L P +G ++G PID
Sbjct: 12 DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISL 71
Query: 114 --FRKVSGYVTQRDTLFPLLTVEETLMFSAKL---RLRLPQAQLRARVKSLVKEL--GLE 166
+R G+V+Q + T+ E L + + L Q A +S V+ + L
Sbjct: 72 ENWRSQIGFVSQDSAIMA-GTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLN 130
Query: 167 HVAMARVGDDRVRGI--SGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDML- 223
VG+ RG+ SGG+R+R++I + +PK+L+LDE T+ LDS S + L
Sbjct: 131 ----TEVGE---RGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALD 183
Query: 224 KVMAETRGRTVILSIHQPGFRI--VKMFNSILMLANGSVLHHGT 265
+M +GRT ++ H R+ + + I + G + G
Sbjct: 184 SLM---KGRTTLVIAH----RLSTIVDADKIYFIEKGQITGSGK 220
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 97.6 bits (244), Expect = 6e-23
Identities = 51/221 (23%), Positives = 104/221 (47%), Gaps = 23/221 (10%)
Query: 61 LDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVS-- 118
LDGVS ++ I+GP+G+GKS+L+ ++ G L G + I + ++
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 119 GYV-T-QRDTLFPLLTVEETLM-----------FSAKLRLRLPQ-AQLRARVKSLVKELG 164
G V T Q +TV E L+ S + +P+ ++ + +++ L
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK 142
Query: 165 LEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLK 224
L H+ D + +SGG+ + V IG ++ +PK++++DEP +G+ A I + +
Sbjct: 143 LSHLY-----DRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVL 197
Query: 225 VMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGT 265
+ +G T ++ H+ ++ + + ++ NG ++ G
Sbjct: 198 ELKA-KGITFLIIEHRLDI-VLNYIDHLYVMFNGQIIAEGR 236
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 96.8 bits (242), Expect = 7e-23
Identities = 48/143 (33%), Positives = 83/143 (58%), Gaps = 11/143 (7%)
Query: 72 EILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK--AQFRKVSGYVTQRDTLFP 129
+ ++GP+GAGKS LE++AG + P G +NG+ I + R + G+V Q LFP
Sbjct: 25 DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGI-GFVPQDYALFP 83
Query: 130 LLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRV 189
L+V + + LR + + + RV+ + ++LG+ H+ D + +SGGER+RV
Sbjct: 84 HLSVYRNIAYG--LR-NVERVERDRRVREMAEKLGIAHLL-----DRKPARLSGGERQRV 135
Query: 190 SIGFDVIHDPKVLILDEPTSGLD 212
++ ++ P++L+LDEP S +D
Sbjct: 136 ALARALVIQPRLLLLDEPLSAVD 158
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 96.1 bits (240), Expect = 2e-22
Identities = 58/220 (26%), Positives = 97/220 (44%), Gaps = 28/220 (12%)
Query: 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQ---FRK 116
VL G++ P ++ A+VGP+G+GKS++ +L P G ++G P+ +
Sbjct: 34 VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT 93
Query: 117 VSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKE-------LGLEHVA 169
V Q LF + E + + L + + ++ E G
Sbjct: 94 QVAAVGQEPLLFGR-SFRENIAYG------LTRTPTMEEITAVAMESGAHDFISGFPQGY 146
Query: 170 MARVGDDRVRGI--SGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMA 227
VG+ G SGG+R+ V++ +I P++LILD TS LD+ + L++ +L
Sbjct: 147 DTEVGE---TGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESP 203
Query: 228 ETRGRTVILSIHQPGFRI--VKMFNSILMLANGSVLHHGT 265
E RTV+L ++ + + IL L GSV GT
Sbjct: 204 EWASRTVLLITQ----QLSLAERAHHILFLKEGSVCEQGT 239
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 95.4 bits (238), Expect = 4e-22
Identities = 58/206 (28%), Positives = 103/206 (50%), Gaps = 21/206 (10%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI-----D 110
G VL G++ + E++ ++GPSG+GKS+ L L G ++G + +
Sbjct: 35 GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTN 94
Query: 111 KAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAM 170
+ R+ G V QR LFP +TV + + + P+ + A+ L+ ++GL+ A
Sbjct: 95 LNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAH 154
Query: 171 ARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAE-- 228
A +SGG+ +RV+I + +PK+++ DEPTS LD + ++L VM +
Sbjct: 155 AYPDS-----LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPE---MVGEVLSVMKQLA 206
Query: 229 TRGRTVILSIHQPGF------RIVKM 248
G T+++ H+ GF R++ M
Sbjct: 207 NEGMTMVVVTHEMGFAREVGDRVLFM 232
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 95.8 bits (239), Expect = 6e-22
Identities = 66/236 (27%), Positives = 106/236 (44%), Gaps = 42/236 (17%)
Query: 55 DGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQ- 113
R L VS P + LA+VGPSGAGKS++L +L SG ++G I +
Sbjct: 64 ADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQ 123
Query: 114 --FRKVSGYVTQRDTLF------------PLLTVEETLMFSAKLRLRLPQAQLRARVKSL 159
R G V Q LF +E + +A+ A + + +
Sbjct: 124 ASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDE-VEAAAQA------AGIHDAIMAF 176
Query: 160 VKELGLEHVAMARVGDDRVRG--ISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSAL 217
+ G +VG+ RG +SGGE++RV+I ++ P +++LDE TS LD+++
Sbjct: 177 PE--GYR----TQVGE---RGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNER 227
Query: 218 QIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNS--ILMLANGSVLHHGT-VDLLS 270
I L + RT I+ H R+ + N+ IL++ +G ++ G LLS
Sbjct: 228 AIQASLAKVC--ANRTTIVVAH----RLSTVVNADQILVIKDGCIVERGRHEALLS 277
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 96.5 bits (241), Expect = 8e-22
Identities = 50/155 (32%), Positives = 87/155 (56%), Gaps = 12/155 (7%)
Query: 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK--AQFRKV 117
LD +S K + E I+GP+GAGK+ LE++AG P SG ++G + + +
Sbjct: 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDI 74
Query: 118 SGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDR 177
+V Q +LFP + V++ L F +++ ++ + RV ++L +EH+ D
Sbjct: 75 -AFVYQNYSLFPHMNVKKNLEFGMRMK-KIKDPK---RVLDTARDLKIEHLL-----DRN 124
Query: 178 VRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLD 212
+SGGE++RV++ ++ +PK+L+LDEP S LD
Sbjct: 125 PLTLSGGEQQRVALARALVTNPKILLLDEPLSALD 159
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 94.1 bits (235), Expect = 9e-22
Identities = 63/231 (27%), Positives = 111/231 (48%), Gaps = 53/231 (22%)
Query: 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQ---FRK 116
+LD ++ K E++ IVG SG+GKS+L +++ P++G ++G + A R+
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRR 83
Query: 117 VSGYVTQRDTLF------------PLLTVEETLMFSAKLR------LRLPQAQLRARVKS 158
G V Q + L P ++VE+ ++++AKL L +
Sbjct: 84 QVGVVLQDNVLLNRSIIDNISLANPGMSVEK-VIYAAKLAGAHDFISELRE--------- 133
Query: 159 LVKELGLEHVAMARVGDDRVRGI--SGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSA 216
G VG+ +G SGG+R+R++I ++++PK+LI DE TS LD S
Sbjct: 134 -----GYN----TIVGE---QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESE 181
Query: 217 LQIIDMLKVMAETRGRTVILSIHQPGFRI--VKMFNSILMLANGSVLHHGT 265
I+ + + +GRTVI+ H R+ VK + I+++ G ++ G
Sbjct: 182 HVIMRNMHKIC--KGRTVIIIAH----RLSTVKNADRIIVMEKGKIVEQGK 226
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 93.0 bits (232), Expect = 3e-21
Identities = 59/236 (25%), Positives = 102/236 (43%), Gaps = 50/236 (21%)
Query: 53 DSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQ----SGSTFVNGSP 108
R L ++ A+VG +G+GKS++ KL + G + G
Sbjct: 28 PKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIA-----KLLYRFYDAEGDIKIGGKN 82
Query: 109 I---DKAQFRKVSGYVTQRDTLF------------PLLTVEETLMFSAKLRLRLPQAQLR 153
+ ++ R + G V Q LF T EE ++ + K AQL
Sbjct: 83 VNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEE-VIKATKS------AQLY 135
Query: 154 ARVKSLVKELGLEHVAMARVGDDRVRGI--SGGERRRVSIGFDVIHDPKVLILDEPTSGL 211
+++L + VG+ +G+ SGGER+R++I ++ DPK++I DE TS L
Sbjct: 136 DFIEAL--PKKWD----TIVGN---KGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSL 186
Query: 212 DSTSALQIIDMLKVMAETRGRTVILSIHQPGFRI--VKMFNSILMLANGSVLHHGT 265
DS + ++ + + RT+I+ H R+ + SI++L G ++ GT
Sbjct: 187 DSKTEYLFQKAVEDLR--KNRTLIIIAH----RLSTISSAESIILLNKGKIVEKGT 236
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 94.6 bits (236), Expect = 4e-21
Identities = 50/164 (30%), Positives = 82/164 (50%), Gaps = 12/164 (7%)
Query: 55 DGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQF 114
G LD V+ + E I+GPSGAGK++ + I+AG P +G + + +
Sbjct: 15 KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGK 74
Query: 115 RKVS------GYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHV 168
V G V Q L+P LT E + F ++ + ++R RV+ + K L + HV
Sbjct: 75 LIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM-KMSKEEIRKRVEEVAKILDIHHV 133
Query: 169 AMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLD 212
+ R +SG +++RV++ ++ DP +L+LDEP S LD
Sbjct: 134 L-----NHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLD 172
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 95.9 bits (239), Expect = 2e-20
Identities = 66/222 (29%), Positives = 110/222 (49%), Gaps = 31/222 (13%)
Query: 59 RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFR 115
VL G+S + K + LA+VG SG GKS+++++L P +GS F++G I + R
Sbjct: 1047 PVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLR 1106
Query: 116 KVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVK-----SLVKEL--GLEHV 168
G V+Q LF ++ E + + R + ++ K + L
Sbjct: 1107 AQLGIVSQEPILFD-CSIAENIAYGDNSR-VVSYEEIVRAAKEANIHQFIDSLPDKYNT- 1163
Query: 169 AMARVGDDRVRG--ISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDML-KV 225
RVGD +G +SGG+++R++I ++ P +L+LDE TS LD+ S + + L K
Sbjct: 1164 ---RVGD---KGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA 1217
Query: 226 MAETRGRTVILSIHQPGFRI--VKMFNSILMLANGSVLHHGT 265
GRT I+ H R+ ++ + I+++ NG V HGT
Sbjct: 1218 R---EGRTCIVIAH----RLSTIQNADLIVVIQNGKVKEHGT 1252
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 88.6 bits (220), Expect = 2e-18
Identities = 59/220 (26%), Positives = 103/220 (46%), Gaps = 27/220 (12%)
Query: 58 RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQ---F 114
++L G++ K K + +A+VG SG GKS+ ++++ P G ++G I
Sbjct: 403 VQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYL 462
Query: 115 RKVSGYVTQRDTLFPLLTVEETLMF--SAKLRLRLPQAQLRARVKSLVKEL--GLEHVAM 170
R++ G V+Q LF T+ E + + + +A A + +L +
Sbjct: 463 REIIGVVSQEPVLFAT-TIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFD---- 517
Query: 171 ARVGDDRVRGI--SGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDML-KVMA 227
VG+ RG SGG+++R++I ++ +PK+L+LDE TS LD+ S + L K
Sbjct: 518 TLVGE---RGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR- 573
Query: 228 ETRGRTVILSIHQPGFRI--VKMFNSILMLANGSVLHHGT 265
GRT I+ H R+ V+ + I G ++ G
Sbjct: 574 --EGRTTIVIAH----RLSTVRNADVIAGFDGGVIVEQGN 607
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 88.0 bits (219), Expect = 7e-20
Identities = 55/215 (25%), Positives = 98/215 (45%), Gaps = 22/215 (10%)
Query: 54 SDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQ 113
+G VL ++ K + ++LA+ G +GAGK+SLL ++ G+L P G +G
Sbjct: 17 EEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------ 70
Query: 114 FRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELG-LEHVAMAR 172
+ +Q + P T++E ++F ++ ++A L +++
Sbjct: 71 ----ISFCSQFSWIMP-GTIKENIIFGVSYDEYRYRSVIKA--CQLEEDISKFAEKDNIV 123
Query: 173 VGDDRVRGI--SGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETR 230
+G+ GI SGG+R R+S+ V D + +LD P LD + +I + V
Sbjct: 124 LGE---GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESC-VCKLMA 179
Query: 231 GRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGT 265
+T IL + +K + IL+L GS +GT
Sbjct: 180 NKTRILVTSKMEH--LKKADKILILHEGSSYFYGT 212
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 88.4 bits (220), Expect = 9e-20
Identities = 59/206 (28%), Positives = 100/206 (48%), Gaps = 25/206 (12%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---- 111
G VL GVS +A+ ++++I+G SG+GKS+ L + P G+ VNG I+
Sbjct: 17 GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDK 76
Query: 112 ------------AQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSL 159
R V Q L+ +TV E +M + L L + R R
Sbjct: 77 DGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKY 136
Query: 160 VKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQI 219
+ ++G++ A + +SGG+++RVSI + +P VL+ DEPTS LD +
Sbjct: 137 LAKVGIDERAQGKYPVH----LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPE---LV 189
Query: 220 IDMLKVMAE--TRGRTVILSIHQPGF 243
++L++M + G+T+++ H+ GF
Sbjct: 190 GEVLRIMQQLAEEGKTMVVVTHEMGF 215
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 87.2 bits (217), Expect = 1e-19
Identities = 48/212 (22%), Positives = 98/212 (46%), Gaps = 26/212 (12%)
Query: 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSG 119
L+G++ ++A+VG G GKSSLL L ++ G + GS
Sbjct: 20 TLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGS----------VA 69
Query: 120 YVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELG-LEHVAMARVGDDRV 178
YV Q+ + ++ E ++F +L ++ ++A +L+ +L L +G+
Sbjct: 70 YVPQQAWIQN-DSLRENILFGCQLEEPYYRSVIQA--CALLPDLEILPSGDRTEIGE--- 123
Query: 179 RGI--SGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAET---RGRT 233
+G+ SGG+++RVS+ V + + + D+P S +D+ I + V+ + +T
Sbjct: 124 KGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFE--NVIGPKGMLKNKT 181
Query: 234 VILSIHQPGFRIVKMFNSILMLANGSVLHHGT 265
IL H + + + I++++ G + G+
Sbjct: 182 RILVTHSMSY--LPQVDVIIVMSGGKISEMGS 211
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 91.1 bits (227), Expect = 2e-19
Identities = 53/186 (28%), Positives = 92/186 (49%), Gaps = 16/186 (8%)
Query: 58 RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI---DKAQF 114
+ L VS + +A+VG SG+GKS++ + SGS ++G +
Sbjct: 356 KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNL 415
Query: 115 RKVSGYVTQRDTLFPLLTVEETLMFSAKL---RLRLPQAQLRARVKSLVKEL--GLEHVA 169
R+ V+Q LF T+ + ++A+ R ++ QA +A ++ + GL+ V
Sbjct: 416 RRHFALVSQNVHLFN-DTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTV- 473
Query: 170 MARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAET 229
+G++ +SGG+R+RV+I ++ D VLILDE TS LD+ S I L +
Sbjct: 474 ---IGENGTS-LSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDEL--Q 527
Query: 230 RGRTVI 235
+ +TV+
Sbjct: 528 KNKTVL 533
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 90.3 bits (225), Expect = 4e-19
Identities = 48/186 (25%), Positives = 87/186 (46%), Gaps = 16/186 (8%)
Query: 58 RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI---DKAQF 114
L ++ K + +A+VG SG+GKS++ ++ G ++G + A
Sbjct: 356 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASL 415
Query: 115 RKVSGYVTQRDTLFPLLTVEETLMF---SAKLRLRLPQAQLRARVKSLVKEL--GLEHVA 169
R V+Q LF TV + + R ++ +A A + ++ GL+ +
Sbjct: 416 RNQVALVSQNVHLFND-TVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTI- 473
Query: 170 MARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAET 229
+G++ V +SGG+R+R++I ++ D +LILDE TS LD+ S I L +
Sbjct: 474 ---IGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDEL--Q 527
Query: 230 RGRTVI 235
+ RT +
Sbjct: 528 KNRTSL 533
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 86.6 bits (215), Expect = 7e-19
Identities = 58/235 (24%), Positives = 102/235 (43%), Gaps = 23/235 (9%)
Query: 34 QLNDDHHAQEELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAG 93
Q N++ L + S VL ++ K + ++LA+ G +GAGK+SLL ++ G
Sbjct: 27 QNNNNRKTSNGDDSLSFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMG 86
Query: 94 KLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLR 153
+L P G +G +S + +Q + P T++E ++ + R
Sbjct: 87 ELEPSEGKIKHSGR---------IS-FCSQNSWIMP-GTIKENIIGVSYDEYRYRSV--- 132
Query: 154 ARVKSLVKELG-LEHVAMARVGDDRVRGI--SGGERRRVSIGFDVIHDPKVLILDEPTSG 210
+ L +++ +G+ GI SGG+R R+S+ V D + +LD P
Sbjct: 133 IKACQLEEDISKFAEKDNIVLGE---GGITLSGGQRARISLARAVYKDADLYLLDSPFGY 189
Query: 211 LDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGT 265
LD + +I + V +T IL + +K + IL+L GS +GT
Sbjct: 190 LDVLTEKEIFESC-VCKLMANKTRILVTSKMEH--LKKADKILILHEGSSYFYGT 241
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 83.4 bits (207), Expect = 2e-17
Identities = 53/172 (30%), Positives = 92/172 (53%), Gaps = 17/172 (9%)
Query: 47 KLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNG 106
++ G + +DGVS + K E +A++GPSG GK++ L +LAG P SG + +
Sbjct: 5 RVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDD 64
Query: 107 ------SPIDKAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLV 160
P R+V V Q L+P +TV E + F + R R+ + ++ RV +
Sbjct: 65 VLVNDIPPKY----REVG-MVFQNYALYPHMTVFENIAFPLRAR-RISKDEVEKRVVEIA 118
Query: 161 KELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLD 212
++L ++++ D + +SGG+++RV++ ++ PKVL+ DEP S LD
Sbjct: 119 RKLLIDNLL-----DRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLD 165
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 83.0 bits (206), Expect = 2e-17
Identities = 52/160 (32%), Positives = 89/160 (55%), Gaps = 17/160 (10%)
Query: 59 RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNG------SPIDKA 112
L+ ++ K K E +A++GPSG+GKS+LL +AG P SG + + P D
Sbjct: 17 TALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKD-- 74
Query: 113 QFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMAR 172
R V V Q L+P +TV + + F +LR + P+ ++ +V+ + K L ++ +
Sbjct: 75 --RNVG-LVFQNWALYPHMTVYKNIAFPLELR-KAPREEIDKKVREVAKMLHIDKLL--- 127
Query: 173 VGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLD 212
+ +SGG+++RV+I ++ +P+VL+LDEP S LD
Sbjct: 128 --NRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLD 165
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 81.5 bits (202), Expect = 1e-16
Identities = 46/160 (28%), Positives = 83/160 (51%), Gaps = 17/160 (10%)
Query: 59 RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNG------SPIDKA 112
++ ++ K E L ++GPSG GK++ L ++AG P G + P D
Sbjct: 25 TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKD-- 82
Query: 113 QFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMAR 172
R +S V Q ++P +TV E + F K++ + P+ ++ RV+ + L +E +
Sbjct: 83 --RNIS-MVFQSYAVWPHMTVYENIAFPLKIK-KFPKDEIDKRVRWAAELLQIEELL--- 135
Query: 173 VGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLD 212
+ +SGG+R+RV++ ++ +P VL++DEP S LD
Sbjct: 136 --NRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLD 173
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 80.7 bits (200), Expect = 2e-16
Identities = 48/163 (29%), Positives = 87/163 (53%), Gaps = 17/163 (10%)
Query: 59 RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI-DKAQFRKV 117
+ +S + K E + ++GPSG GK++ L ++AG P G ++ + D + V
Sbjct: 17 TAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFV 76
Query: 118 SGYVTQRD--------TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVA 169
RD L+P +TV + + F KLR ++P+ ++ RV+ + + LGL +
Sbjct: 77 PP--KDRDIAMVFQSYALYPHMTVYDNIAFPLKLR-KVPRQEIDQRVREVAELLGLTELL 133
Query: 170 MARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLD 212
+ + R +SGG+R+RV++G ++ P+V ++DEP S LD
Sbjct: 134 -----NRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLD 171
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 81.9 bits (203), Expect = 2e-16
Identities = 63/231 (27%), Positives = 107/231 (46%), Gaps = 41/231 (17%)
Query: 54 SDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI---D 110
+D +L ++ + E +A VG SG GKS+L+ ++ SG ++G I
Sbjct: 350 NDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFL 409
Query: 111 KAQFRKVSGYVTQRDTLF------------PLLTVEETLMFSAKLRLRLPQAQLRARVKS 158
R G V Q + LF P T EE ++ +AK+ A
Sbjct: 410 TGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEE-VVEAAKM----------ANAHD 458
Query: 159 LVKEL--GLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSA 216
+ L G + VG+ V+ +SGG+++R+SI +++P +LILDE TS LD S
Sbjct: 459 FIMNLPQGYDTE----VGERGVK-LSGGQKQRLSIARIFLNNPPILILDEATSALDLESE 513
Query: 217 LQIIDMLKVMAETRGRTVILSIHQPGFRI--VKMFNSILMLANGSVLHHGT 265
I + L V+++ RT ++ H R+ + + I+++ NG ++ GT
Sbjct: 514 SIIQEALDVLSK--DRTTLIVAH----RLSTITHADKIVVIENGHIVETGT 558
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 77.9 bits (193), Expect = 3e-16
Identities = 50/197 (25%), Positives = 88/197 (44%), Gaps = 35/197 (17%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFR 115
G + G+ K +I+ ++G +GAGK++ L +AG + Q G NG I
Sbjct: 17 GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAH 76
Query: 116 KVS----GYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQ------------LRARVKSL 159
++ V + +FP LTV E LM A R + L+ R+K L
Sbjct: 77 VINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQL 136
Query: 160 VKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQI 219
L SGGE++ ++IG ++ PK+L++DEP+ GL ++
Sbjct: 137 GGTL------------------SGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEV 178
Query: 220 IDMLKVMAETRGRTVIL 236
++++ + + G T++L
Sbjct: 179 FEVIQKINQE-GTTILL 194
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 75.9 bits (187), Expect = 7e-15
Identities = 60/287 (20%), Positives = 113/287 (39%), Gaps = 40/287 (13%)
Query: 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRK 116
+L+ +S P + + ++G +G+GKS+LL L G ++G D Q+RK
Sbjct: 36 ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNT-EGEIQIDGVSWDSITLEQWRK 94
Query: 117 VSGYVTQRDTLF---------PLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEH 167
G + Q+ +F P + ++ + LR+ ++ L+
Sbjct: 95 AFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKV-----ADEVGLRSVIEQF--PGKLDF 147
Query: 168 VAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMA 227
V + G +S G ++ + + V+ K+L+LDEP++ LD + I LK
Sbjct: 148 V-LVDGGCV----LSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLK--Q 200
Query: 228 ETRGRTVILSIHQPGFRIVKMFNS--ILMLANGSVLHHGT-VDLL----SVSLRMMGLQL 280
TVIL RI M L++ V + + ++L +
Sbjct: 201 AFADCTVILCEA----RIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFVAGFIGSP 256
Query: 281 PMHVNVVEFAIESIDLIQEQRKIQQENQPRMMLPATQQQKKAEEGES 327
M+ V+ +ID Q Q ++ N+ ++ LP + + S
Sbjct: 257 KMNFLPVKVTATAID--QVQVELPMPNRQQVWLPVESRDVQVGANMS 301
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 75.3 bits (186), Expect = 2e-14
Identities = 64/223 (28%), Positives = 104/223 (46%), Gaps = 37/223 (16%)
Query: 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI---DKAQFRK 116
VL GV+ KP ++A++G +G+GKS+L+ ++ + P+ G V+ + R
Sbjct: 358 VLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRG 417
Query: 117 VSGYVTQRDTLFPLLTVEETLMF------SAKLRLRLPQAQLRARVKSLVKELGLEHVAM 170
V Q LF T++E L + ++ AQ+ + S G + +
Sbjct: 418 HISAVPQETVLFS-GTIKENLKWGREDATDDEIVEAAKIAQIHDFIIS--LPEGYDSR-V 473
Query: 171 ARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSAL------QIIDMLK 224
R G R SGG+++R+SI ++ PKVLILD D TS++ +I+D LK
Sbjct: 474 ERGG----RNFSGGQKQRLSIARALVKKPKVLILD------DCTSSVDPITEKRILDGLK 523
Query: 225 VMAETRGRTVILSIHQPGFRI--VKMFNSILMLANGSVLHHGT 265
T+G T + I Q +I + + IL+L G V GT
Sbjct: 524 --RYTKGCTTFI-ITQ---KIPTALLADKILVLHEGKVAGFGT 560
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 73.9 bits (181), Expect = 8e-14
Identities = 41/206 (19%), Positives = 79/206 (38%), Gaps = 33/206 (16%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFR 115
G + +L+ + K I GP+G GKS+L+ +A ++ +
Sbjct: 446 GAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGF-------PTQEECR-- 496
Query: 116 KVSGYVTQR-DTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVG 174
+ YV D +V + + S + +K + E G +A
Sbjct: 497 --TVYVEHDIDGTHSDTSVLDFVFESG--------VGTKEAIKDKLIEFGFTDEMIAM-- 544
Query: 175 DDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTV 234
+ +SGG + ++++ V+ + +L+LDEPT+ LD+ + +++ L T G T
Sbjct: 545 --PISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLN----TCGITS 598
Query: 235 ILSIHQPGF--RIVKMFNSILMLANG 258
I H F + I+
Sbjct: 599 ITISHDSVFLDNVC---EYIINYEGL 621
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 57.7 bits (139), Expect = 9e-09
Identities = 30/135 (22%), Positives = 56/135 (41%), Gaps = 15/135 (11%)
Query: 133 VEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIG 192
V E M A + R ++ LGL+ ++ R+RG+SGG++ ++ +
Sbjct: 858 VAEVDMKEALASGQFRPLT-RKEIEEHCSMLGLDPEIVS---HSRIRGLSGGQKVKLVLA 913
Query: 193 FDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAE---TRGRTVILSIHQPGFRIVKMF 249
P +++LDEPT+ LD D L +++ VI+ H F +
Sbjct: 914 AGTWQRPHLIVLDEPTNYLD-------RDSLGALSKALKEFEGGVIIITHSAEF-TKNLT 965
Query: 250 NSILMLANGSVLHHG 264
+ + +G + G
Sbjct: 966 EEVWAVKDGRMTPSG 980
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 51.6 bits (123), Expect = 8e-07
Identities = 20/97 (20%), Positives = 44/97 (45%), Gaps = 10/97 (10%)
Query: 42 QEELSKLEEAADS--DGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQS 99
Q+ + K+ + + ++ + +A++GP+GAGKS+L+ +L G+L P S
Sbjct: 668 QKAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTS 727
Query: 100 GSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTVEET 136
G + + ++ Y+ Q +++T
Sbjct: 728 GE-------VYTHENCRI-AYIKQHAFAHIESHLDKT 756
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 71.4 bits (176), Expect = 2e-13
Identities = 55/159 (34%), Positives = 82/159 (51%), Gaps = 17/159 (10%)
Query: 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNG------SPIDKAQ 113
V ++ E + VGPSG GKS+LL ++AG T SG F+ P +
Sbjct: 18 VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAE--- 74
Query: 114 FRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARV 173
R V G V Q L+P L+V E + F KL + + RV + + L L H+ + R
Sbjct: 75 -RGV-GMVFQSYALYPHLSVAENMSFGLKLA-GAKKEVINQRVNQVAEVLQLAHL-LDR- 129
Query: 174 GDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLD 212
+ + +SGG+R+RV+IG ++ +P V +LDEP S LD
Sbjct: 130 ---KPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 71.8 bits (175), Expect = 4e-13
Identities = 50/420 (11%), Positives = 127/420 (30%), Gaps = 104/420 (24%)
Query: 15 NYNVYTQKKETPFKIFTKNQLNDDHHA--QEELSKLEEAADSDGVRRVLDGVSCKAKPWE 72
+Y ++++ +++ NQ+ ++ + KL +A + +P +
Sbjct: 108 MTRMYIEQRD---RLYNDNQVFAKYNVSRLQPYLKLRQAL-------------LELRPAK 151
Query: 73 ILAIVGPSGAGKSSL-LEILAGKLTPQSGSTFVNGSP-----IDKAQFRKVSGYVTQRDT 126
+ I G G+GK+ + L++ ++ +
Sbjct: 152 NVLIDGVLGSGKTWVALDVC-------LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204
Query: 127 LFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGER 186
L + T ++L ++A ++ L+K E+ + V + V+
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL--VLLN-VQ------N 255
Query: 187 RRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIV 246
+ F++ K+L+ T Q+ D L T + L H
Sbjct: 256 AKAWNAFNL--SCKILLT---------TRFKQVTDFLSAATTTH---ISLDHHSMTL--- 298
Query: 247 KMFNSILMLANGSVLHHGTVDL----LSVSLRMMGLQLPMHVNVV-EFAIESIDLIQEQR 301
+L L DL L+ + P ++++ E + + +
Sbjct: 299 TPDEVKSLLLK--YLDCRPQDLPREVLTTN--------PRRLSIIAESIRDGLATWDNWK 348
Query: 302 KIQQENQPRMMLPATQQQKKAEEGESRSGKFTLQQLFQQSKVIDEEIMNVGIEIPRD--- 358
+ + ++ + + AE +++F + IP
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAE----------YRKMFD-----RLSVFPPSAHIPTILLS 393
Query: 359 --FANSRFKETIILTHRFSKNIFRTKELFACRTIQMLISGIVLGSIFHNVKDDLTGTEEK 416
+ + + +++ ++ K L + + IS ++ +L E
Sbjct: 394 LIWFDVIKSDVMVVVNKLHK-----YSLVEKQPKESTIS-------IPSIYLELKVKLEN 441
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.1 bits (98), Expect = 6e-04
Identities = 78/549 (14%), Positives = 152/549 (27%), Gaps = 195/549 (35%)
Query: 193 FDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSI 252
FD + D P S L II A + + ++ +V+ F
Sbjct: 33 FDCKD-----VQDMPKSILSKEEIDHIIMSKD--AVSGTLRLFWTLLSKQEEMVQKFVEE 85
Query: 253 LMLAN----GSVLHHGTVDLLSVSLRMMGLQLPMHVNVVEFAIESIDLIQEQRKIQQENQ 308
++ N S + ++ + + ++ + FA ++ +Q K++Q
Sbjct: 86 VLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ--- 142
Query: 309 PRMMLPATQQQKKAE----EGESRSGKFTL------------------------------ 334
A + + A+ +G SGK +
Sbjct: 143 ------ALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPE 196
Query: 335 ------QQLFQQ-----------SKVIDEEIMNVGIEIPRDFANSRFKET-IILTHRFSK 376
Q+L Q S I I ++ E+ R + ++ ++L + +
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA 256
Query: 377 NIFRTKELFA--CRTI-----QMLISGIVLGSIFHNVKDDLTGT---EEKVGLFAFILTF 426
+ F C+ + + + + + H D + T +E L
Sbjct: 257 KAWNA---FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY--- 310
Query: 427 LLSCTTEALPIFLQEREILMKETSCGSYRVSSYAIANGLVYLPFLL-ILAILFSVPL--- 482
L C + LP RE + T+ P L I+A L
Sbjct: 311 -LDCRPQDLP-----RE--VLTTN------------------PRRLSIIAESIRDGLATW 344
Query: 483 -YW---------------IVGLNPNLM-----AFFHF----------LLLIW--LILYTA 509
W + L P F L LIW +I
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV 404
Query: 510 NSVVVCFSALVPNFIVGNSVI--SGVMGSFFLFSGYFISKHGIPDYWIFMH------YIS 561
VV N + S++ + + S Y K + + +H Y
Sbjct: 405 MVVV--------NKLHKYSLVEKQPKESTISIPSIYLELKVKLENE-YALHRSIVDHYNI 455
Query: 562 LFKYPFEQFLINEFSDSDKCLQYIFGKCVVKGEDV---LREAGYEEESSWRNLVIMVGFI 618
+ + + + D QY + + L+ + E + F
Sbjct: 456 PKTFDSDDLIPP-YLD-----QYFY-------SHIGHHLKNIEHPERMT--------LFR 494
Query: 619 LIY---RFI 624
+++ RF+
Sbjct: 495 MVFLDFRFL 503
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 66.8 bits (164), Expect = 1e-11
Identities = 64/232 (27%), Positives = 105/232 (45%), Gaps = 51/232 (21%)
Query: 58 RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI---DKAQF 114
+ VL ++ KP + +A+VGP+G+GK++++ +L G V+G I ++
Sbjct: 368 KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSL 427
Query: 115 RKVSGYVTQRDT-LFPLLTVEETLMFS------------AKLRLRLPQAQLRARVKSLVK 161
R G V Q DT LF TV+E L + AKL +K
Sbjct: 428 RSSIGIVLQ-DTILFS-TTVKENLKYGNPGATDEEIKEAAKL----------THSDHFIK 475
Query: 162 EL--GLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQI 219
L G E V D +S G+R+ ++I + +PK+LILDE TS +D+ + I
Sbjct: 476 HLPEGYETVL-----TDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSI 530
Query: 220 ID-MLKVMAETRGRT--VI---LSIHQPGFRIVKMFNSILMLANGSVLHHGT 265
M K+M G+T +I L+ +K + I++L +G ++ G
Sbjct: 531 QAAMWKLM---EGKTSIIIAHRLN-------TIKNADLIIVLRDGEIVEMGK 572
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 57.9 bits (141), Expect = 2e-09
Identities = 58/190 (30%), Positives = 90/190 (47%), Gaps = 44/190 (23%)
Query: 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQ----SGSTFVNG------SPI 109
+L GV+ E+ A++GP+GAGKS+L +ILAG P+ G ++G SP
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGD--PEYTVERGEILLDGENILELSPD 75
Query: 110 DKAQFRKVSGYVTQRDTLF---------PLLTVEETL--MFSAKLRLRLPQAQLRARVKS 158
++A R LF P +T+ L AKL + A+ +VK
Sbjct: 76 ERA-----------RKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKK 124
Query: 159 LVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQ 218
++ L + ++R ++ G SGGE++R I ++ +P +LDE SGLD
Sbjct: 125 ALELLDWDESYLSRYLNE---GFSGGEKKRNEILQLLVLEPTYAVLDETDSGLD------ 175
Query: 219 IIDMLKVMAE 228
ID LKV+A
Sbjct: 176 -IDALKVVAR 184
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 55.2 bits (134), Expect = 2e-08
Identities = 54/195 (27%), Positives = 85/195 (43%), Gaps = 50/195 (25%)
Query: 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQ----SGSTFVNG------SPI 109
+L G+S P E+ AI+GP+G+GKS+L LAG+ G+ G SP
Sbjct: 35 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGR--EDYEVTGGTVEFKGKDLLALSPE 92
Query: 110 DKAQFRKVSGYVTQRDTLF---------PLLTVEETL--MFSAKLRLR----LPQAQLRA 154
D+A + +F P ++ + L +A R L + +
Sbjct: 93 DRA-----------GEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQD 141
Query: 155 RVKSLVKELGLEHVAMAR-VGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDS 213
++ + L + + R V G SGGE++R I + +P++ ILDE SGLD
Sbjct: 142 LMEEKIALLKMPEDLLTRSVNV----GFSGGEKKRNDILQMAVLEPELCILDESDSGLD- 196
Query: 214 TSALQIIDMLKVMAE 228
ID LKV+A+
Sbjct: 197 ------IDALKVVAD 205
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 1e-06
Identities = 24/115 (20%), Positives = 44/115 (38%), Gaps = 12/115 (10%)
Query: 131 LTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRV- 189
E A+ + ++ V L + R + +SGGER +
Sbjct: 13 KIGELASEIFAEFTEGKYSEVVVRAEENKV-RLFVVWEGKER----PLTFLSGGERIALG 67
Query: 190 -----SIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIH 239
++ + + +LILDEPT LD ++I +++ + + VIL H
Sbjct: 68 LAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK-KIPQVILVSH 121
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 44.7 bits (105), Expect = 6e-05
Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 9/91 (9%)
Query: 182 SGGERRRV------SIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVI 235
SGGER + ++ + + +LILDEPT LD ++I +++ + VI
Sbjct: 250 SGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK-IPQVI 308
Query: 236 LSIHQPGFRIVKMFNSILMLANGSVLHHGTV 266
L H + ++ ++ + V
Sbjct: 309 LVSHDEEL--KDAADHVIRISLENGSSKVEV 337
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A Length = 279 | Back alignment and structure |
|---|
Score = 41.2 bits (96), Expect = 5e-04
Identities = 31/179 (17%), Positives = 56/179 (31%), Gaps = 38/179 (21%)
Query: 73 ILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLT 132
+ A+V P GAGKS L LA ++ G + + ++ L
Sbjct: 32 VGALVSPGGAGKSMLALQLAAQIA--GGPDLLEVGE------------LPTGPVIY--LP 75
Query: 133 VEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIG 192
E+ P + R+ +L L E G I
Sbjct: 76 AED------------PPTAIHHRLHALGAHLSAEERQAVADGLLIQPLIGSLPNIMAPEW 123
Query: 193 FDVI----HDPKVLILDEPTSGL-----DSTSALQIIDMLKVMAETRGRTVILSIHQPG 242
FD + ++++LD S Q+I ++ +A G +++ +H
Sbjct: 124 FDGLKRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVF-LHHAS 181
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 643 | ||||
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 1e-44 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 2e-43 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 9e-42 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 2e-41 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 1e-38 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 9e-38 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 1e-37 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 3e-37 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 2e-36 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 7e-36 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 7e-36 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 7e-35 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 2e-34 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 9e-34 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 1e-33 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 2e-33 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 2e-33 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 2e-31 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 3e-30 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 3e-27 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 1e-11 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 2e-07 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 4e-07 |
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 157 bits (399), Expect = 1e-44
Identities = 52/213 (24%), Positives = 102/213 (47%), Gaps = 8/213 (3%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-AQF 114
G ++ ++ K E L ++GPSG GK++ L ++AG P G + +
Sbjct: 17 GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK 76
Query: 115 RKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVG 174
+ V Q ++P +TV E + F K++ + P+ ++ RV+ + L +E +
Sbjct: 77 DRNISMVFQSYAVWPHMTVYENIAFPLKIK-KFPKDEIDKRVRWAAELLQIEELL----- 130
Query: 175 DDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTV 234
+ +SGG+R+RV++ ++ +P VL++DEP S LD+ + + +K + + T
Sbjct: 131 NRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTT 190
Query: 235 ILSIHQPGFRIVKMFNSILMLANGSVLHHGTVD 267
I H + M + I ++ G +L G+
Sbjct: 191 IYVTHDQVE-AMTMGDRIAVMNRGQLLQIGSPT 222
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 153 bits (389), Expect = 2e-43
Identities = 57/223 (25%), Positives = 107/223 (47%), Gaps = 15/223 (6%)
Query: 53 DSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKA 112
+ + L V+ K E ++I+GPSG+GKS++L I+ P G +++ +
Sbjct: 13 MGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDL 72
Query: 113 QFRKVS-------GYVTQRDTLFPLLTVEETLMFSAKLRLR--LPQAQLRARVKSLVKEL 163
+++ G+V Q+ L PLLT E + + R + + R R +K
Sbjct: 73 DDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMA 132
Query: 164 GLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDML 223
LE R + + +SGG+++RV+I + ++P +++ D+PT LDS + +I+ +L
Sbjct: 133 ELEE----RFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLL 188
Query: 224 KVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTV 266
K + E G+TV++ H + I+ L +G V +
Sbjct: 189 KKLNEEDGKTVVVVTHDINV--ARFGERIIYLKDGEVEREEKL 229
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 149 bits (379), Expect = 9e-42
Identities = 62/228 (27%), Positives = 110/228 (48%), Gaps = 22/228 (9%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---- 111
G VL GVS +A+ ++++I+G SG+GKS+ L + P G+ VNG I+
Sbjct: 13 GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDK 72
Query: 112 ------------AQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSL 159
R V Q L+ +TV E +M + L L + R R
Sbjct: 73 DGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKY 132
Query: 160 VKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQI 219
+ ++G++ A + +SGG+++RVSI + +P VL+ DEPTS LD ++
Sbjct: 133 LAKVGIDERAQGK----YPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEV 188
Query: 220 IDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVD 267
+ +++ +AE G+T+++ H+ GF + + ++ L G + G +
Sbjct: 189 LRIMQQLAE-EGKTMVVVTHEMGF-ARHVSSHVIFLHQGKIEEEGDPE 234
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 148 bits (375), Expect = 2e-41
Identities = 58/221 (26%), Positives = 106/221 (47%), Gaps = 13/221 (5%)
Query: 53 DSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI--- 109
+ L+ VS +I ++G SGAGKS+L+ + P GS V+G +
Sbjct: 13 QGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTL 72
Query: 110 ---DKAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLE 166
+ + R+ G + Q L TV + +L P+ +++ RV L+ +GL
Sbjct: 73 SESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD-NTPKDEVKRRVTELLSLVGLG 131
Query: 167 HVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVM 226
D +SGG+++RV+I + +PKVL+ DE TS LD + I+++LK +
Sbjct: 132 DKH-----DSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDI 186
Query: 227 AETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVD 267
G T++L H+ + ++ + + +++NG ++ TV
Sbjct: 187 NRRLGLTILLITHEMDV-VKRICDCVAVISNGELIEQDTVS 226
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 140 bits (354), Expect = 1e-38
Identities = 60/214 (28%), Positives = 110/214 (51%), Gaps = 10/214 (4%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNG--SPIDKAQ 113
G + +L G+S + + EI ++GP+GAGK++ L I++ + P SG V G + +
Sbjct: 13 GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHE 72
Query: 114 FRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARV 173
RK+ Y+ + + + E L F A +++ V+ + GL
Sbjct: 73 VRKLISYLPEEAGAYRNMQGIEYLRFVAGFY-ASSSSEIEEMVERATEIAGLGEKI---- 127
Query: 174 GDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRT 233
DRV S G R++ I ++ +P++ ILDEPTSGLD +A ++ +LK ++ G T
Sbjct: 128 -KDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ-EGLT 185
Query: 234 VILSIHQPGFRIVKMFNSILMLANGSVLHHGTVD 267
+++S H + + + I ++ NG+++ GTV+
Sbjct: 186 ILVSSHNMLE-VEFLCDRIALIHNGTIVETGTVE 218
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 138 bits (350), Expect = 9e-38
Identities = 48/228 (21%), Positives = 99/228 (43%), Gaps = 23/228 (10%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPID----K 111
G + LDGVS ++ I+GP+G+GKS+L+ ++ G L G + I
Sbjct: 15 GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPA 74
Query: 112 AQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLP------------QAQLRARVKSL 159
+ Q +TV E L+ P + ++ + +
Sbjct: 75 ELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKI 134
Query: 160 VKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQI 219
++ L L H+ D + +SGG+ + V IG ++ +PK++++DEP +G+ A I
Sbjct: 135 LEFLKLSHLY-----DRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDI 189
Query: 220 IDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVD 267
+ + + +G T ++ H+ ++ + + ++ NG ++ G +
Sbjct: 190 FNHVLELKA-KGITFLIIEHRLDI-VLNYIDHLYVMFNGQIIAEGRGE 235
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 138 bits (349), Expect = 1e-37
Identities = 58/222 (26%), Positives = 102/222 (45%), Gaps = 17/222 (7%)
Query: 55 DGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI---DK 111
D +L ++ + E +A VG SG GKS+L+ ++ SG ++G I
Sbjct: 28 DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLT 87
Query: 112 AQFRKVSGYVTQRDTLFPLLTVEETLMFSAKL--RLRLPQAQLRARVKSLVKEL--GLEH 167
R G V Q+D + TV+E ++ + +A A + L G +
Sbjct: 88 GSLRNQIGLV-QQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDT 146
Query: 168 VAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMA 227
+R +SGG+++R+SI +++P +LILDE TS LD S I + L V++
Sbjct: 147 EV-----GERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS 201
Query: 228 ETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLL 269
+ RT ++ H+ + + I+++ NG ++ GT L
Sbjct: 202 --KDRTTLIVAHRLST--ITHADKIVVIENGHIVETGTHREL 239
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 137 bits (346), Expect = 3e-37
Identities = 56/215 (26%), Positives = 98/215 (45%), Gaps = 6/215 (2%)
Query: 58 RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI---DKAQF 114
VL G++ +P E+ A+VGP+G+GKS++ +L P G ++G P+ +
Sbjct: 27 VLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYL 86
Query: 115 RKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVG 174
+ V Q +F +++E + + + + + A +
Sbjct: 87 HRQVAAVGQEPQVFGR-SLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEV 145
Query: 175 DDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTV 234
D+ +SGG+R+ V++ +I P VLILD+ TS LD+ S LQ+ +L E R+V
Sbjct: 146 DEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSV 205
Query: 235 ILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLL 269
+L V+ + IL L G++ GT L
Sbjct: 206 LLITQHLSL--VEQADHILFLEGGAIREGGTHQQL 238
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 134 bits (339), Expect = 2e-36
Identities = 50/217 (23%), Positives = 97/217 (44%), Gaps = 16/217 (7%)
Query: 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRK 116
L ++ K + +A+VG SG+GKS++ ++ G ++G + + A R
Sbjct: 30 ALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRN 89
Query: 117 VSGYVTQRDTLFPLLTVEETLMF--SAKLRLRLPQAQLRARVKSLVKEL--GLEHVAMAR 172
V+Q LF R ++ +A A + ++ GL+ +
Sbjct: 90 QVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTII--- 146
Query: 173 VGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGR 232
+ +SGG+R+R++I ++ D +LILDE TS LD+ S I L + + R
Sbjct: 147 --GENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ--KNR 202
Query: 233 TVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLL 269
T ++ H+ ++ + I+++ +G ++ GT L
Sbjct: 203 TSLVIAHRLST--IEQADEIVVVEDGIIVERGTHSEL 237
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 134 bits (338), Expect = 7e-36
Identities = 49/212 (23%), Positives = 87/212 (41%), Gaps = 16/212 (7%)
Query: 58 RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKV 117
VL ++ + E+LAI G +G+GK+SLL ++ G+L G +G
Sbjct: 49 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRV--------- 99
Query: 118 SGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDR 177
+ +Q + P T++E ++F + + +G +
Sbjct: 100 -SFCSQFSWIMP-GTIKENIIFGVSYD-EYRYKSVVKACQLQQDITKFAEQDNTVLG-EG 155
Query: 178 VRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILS 237
+SGG+R R+S+ V D + +LD P LD + Q+ + V +T IL
Sbjct: 156 GVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFE-SCVCKLMANKTRILV 214
Query: 238 IHQPGFRIVKMFNSILMLANGSVLHHGTVDLL 269
+ ++ + IL+L GS +GT L
Sbjct: 215 TSKMEH--LRKADKILILHQGSSYFYGTFSEL 244
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 133 bits (335), Expect = 7e-36
Identities = 56/218 (25%), Positives = 99/218 (45%), Gaps = 8/218 (3%)
Query: 55 DGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK--- 111
D ++L +S +A+P I+A GPSG GKS++ +L P +G ++G PID
Sbjct: 12 DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISL 71
Query: 112 AQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMA 171
+R G+V+Q + T+ E L + + + + +
Sbjct: 72 ENWRSQIGFVSQDSAIMA-GTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLN 130
Query: 172 RVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRG 231
+R ISGG+R+R++I + +PK+L+LDE T+ LDS S + L + +G
Sbjct: 131 TEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM--KG 188
Query: 232 RTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLL 269
RT ++ H+ + + I + G + G + L
Sbjct: 189 RTTLVIAHRLST--IVDADKIYFIEKGQITGSGKHNEL 224
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 128 bits (324), Expect = 7e-35
Identities = 35/182 (19%), Positives = 83/182 (45%), Gaps = 11/182 (6%)
Query: 58 RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKV 117
+ VL+ ++ + ++ GP+G GK++LL+ ++ L P G NG PI K +
Sbjct: 14 KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKV--KGK 71
Query: 118 SGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDR 177
++ + + ++VE+ L A L + + ++ + + + +
Sbjct: 72 IFFLPEEIIVPRKISVEDYLKAVASLY---GVKVNKNEIMDALESVEVLDLK------KK 122
Query: 178 VRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILS 237
+ +S G RRV + ++ + ++ +LD+P +D S +++ + + + +G +I S
Sbjct: 123 LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISS 182
Query: 238 IH 239
Sbjct: 183 RE 184
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 128 bits (323), Expect = 2e-34
Identities = 58/219 (26%), Positives = 108/219 (49%), Gaps = 14/219 (6%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI------ 109
G + +S + K E + ++GPSG GK++ L ++AG P G ++ +
Sbjct: 14 GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKG 73
Query: 110 -DKAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHV 168
+ V Q L+P +TV + + F KLR ++P+ ++ RV+ + + LGL +
Sbjct: 74 IFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR-KVPRQEIDQRVREVAELLGLTEL 132
Query: 169 AMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAE 228
+ + R +SGG+R+RV++G ++ P+V ++DEP S LD+ +++ LK +
Sbjct: 133 L-----NRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQR 187
Query: 229 TRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVD 267
G T I H + M + I ++ G + G+ D
Sbjct: 188 QLGVTTIYVTHDQVE-AMTMGDRIAVMNRGVLQQVGSPD 225
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 126 bits (319), Expect = 9e-34
Identities = 65/213 (30%), Positives = 104/213 (48%), Gaps = 8/213 (3%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI-DKAQF 114
G V ++ E + VGPSG GKS+LL ++AG T SG F+ + D
Sbjct: 11 GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA 70
Query: 115 RKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVG 174
+ G V Q L+P L+V E + F KL + + RV + + L L H+
Sbjct: 71 ERGVGMVFQSYALYPHLSVAENMSFGLKLA-GAKKEVINQRVNQVAEVLQLAHLL----- 124
Query: 175 DDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTV 234
D + + +SGG+R+RV+IG ++ +P V +LDEP S LD+ +Q+ + + + GRT+
Sbjct: 125 DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTM 184
Query: 235 ILSIHQPGFRIVKMFNSILMLANGSVLHHGTVD 267
I H + + + I++L G V G
Sbjct: 185 IYVTHDQVE-AMTLADKIVVLDAGRVAQVGKPL 216
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 126 bits (318), Expect = 1e-33
Identities = 51/216 (23%), Positives = 97/216 (44%), Gaps = 12/216 (5%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---- 111
G + G+ K +I+ ++G +GAGK++ L +AG + Q G NG I
Sbjct: 17 GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAH 76
Query: 112 AQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMA 171
R V + +FP LTV E LM A R + +K ++ + +
Sbjct: 77 VINRMGIALVPEGRRIFPELTVYENLMMGAYNRKD------KEGIKRDLEWIFSLFPRLK 130
Query: 172 RVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRG 231
+SGGE++ ++IG ++ PK+L++DEP+ GL ++ ++++ + + G
Sbjct: 131 ERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ-EG 189
Query: 232 RTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVD 267
T++L +K+ + +L G ++ G
Sbjct: 190 TTILLVEQNALG-ALKVAHYGYVLETGQIVLEGKAS 224
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 126 bits (317), Expect = 2e-33
Identities = 52/222 (23%), Positives = 92/222 (41%), Gaps = 24/222 (10%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---A 112
L +S + + EIL +VGP+GAGKS+LL +AG +T GS G P++
Sbjct: 10 AESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSGKGSIQFAGQPLEAWSAT 68
Query: 113 QFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMAR 172
+ Y++Q+ T V L + R + + L L+
Sbjct: 69 KLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTR------TELLNDVAGALALDDKL--- 119
Query: 173 VGDDRVRGISGGERRRVSIGFDVIH-------DPKVLILDEPTSGLDSTSALQIIDMLKV 225
+SGGE +RV + V+ ++L+LDEP + LD + +L
Sbjct: 120 --GRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSA 177
Query: 226 MAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVD 267
+ + +G +++S H ++ + +L G +L G +
Sbjct: 178 LCQ-QGLAIVMSSHDLNH-TLRHAHRAWLLKGGKMLASGRRE 217
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 126 bits (317), Expect = 2e-33
Identities = 54/217 (24%), Positives = 105/217 (48%), Gaps = 9/217 (4%)
Query: 54 SDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI---D 110
+LD ++ K E++ IVG SG+GKS+L +++ P++G ++G + D
Sbjct: 12 KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALAD 71
Query: 111 KAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAM 170
R+ G V Q + L ++ + A + + + A++ +
Sbjct: 72 PNWLRRQVGVVLQDNVLLNRSIIDNISL--ANPGMSVEKVIYAAKLAGAHDFISELREGY 129
Query: 171 ARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETR 230
+ ++ G+SGG+R+R++I ++++PK+LI DE TS LD S I+ + + +
Sbjct: 130 NTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC--K 187
Query: 231 GRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVD 267
GRTVI+ H+ VK + I+++ G ++ G
Sbjct: 188 GRTVIIIAHRLST--VKNADRIIVMEKGKIVEQGKHK 222
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 120 bits (301), Expect = 2e-31
Identities = 60/220 (27%), Positives = 108/220 (49%), Gaps = 15/220 (6%)
Query: 55 DGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPID---- 110
G LD V+ + E I+GPSGAGK++ + I+AG P +G + + +
Sbjct: 15 KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGK 74
Query: 111 ---KAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEH 167
+ RK+ G V Q L+P LT E + F ++ + ++R RV+ + K L + H
Sbjct: 75 LIVPPEDRKI-GMVFQTWALYPNLTAFENIAFPLTNM-KMSKEEIRKRVEEVAKILDIHH 132
Query: 168 VAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMA 227
V + R +SG +++RV++ ++ DP +L+LDEP S LD+ ++K +
Sbjct: 133 VL-----NHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQ 187
Query: 228 ETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVD 267
G T+++ H P I + + + +L G ++ G +
Sbjct: 188 SRLGVTLLVVSHDPAD-IFAIADRVGVLVKGKLVQVGKPE 226
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 116 bits (292), Expect = 3e-30
Identities = 62/209 (29%), Positives = 109/209 (52%), Gaps = 11/209 (5%)
Query: 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI-DKAQFRKVS 118
LD +S K + E I+GP+GAGK+ LE++AG P SG ++G + D + +
Sbjct: 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDI 74
Query: 119 GYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRV 178
+V Q +LFP + V++ L F +R+ + + RV ++L +EH+ D
Sbjct: 75 AFVYQNYSLFPHMNVKKNLEF----GMRMKKIKDPKRVLDTARDLKIEHLL-----DRNP 125
Query: 179 RGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSI 238
+SGGE++RV++ ++ +PK+L+LDEP S LD + +ML V+ + TV+
Sbjct: 126 LTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHIT 185
Query: 239 HQPGFRIVKMFNSILMLANGSVLHHGTVD 267
H M + I ++ +G ++ G +
Sbjct: 186 HDQTE-ARIMADRIAVVMDGKLIQVGKPE 213
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 108 bits (271), Expect = 3e-27
Identities = 51/197 (25%), Positives = 102/197 (51%), Gaps = 10/197 (5%)
Query: 72 EILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-AQFRKVSGYVTQRDTLFPL 130
+ ++GP+GAGKS LE++AG + P G +NG+ I R+ G+V Q LFP
Sbjct: 25 DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPH 84
Query: 131 LTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVS 190
L+V + + + + + + RV+ + ++LG+ H+ D + +SGGER+RV+
Sbjct: 85 LSVYRNIAYGLR---NVERVERDRRVREMAEKLGIAHLL-----DRKPARLSGGERQRVA 136
Query: 191 IGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFN 250
+ ++ P++L+LDEP S +D + +++ L+ + ++ H + +
Sbjct: 137 LARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIE-AAMLAD 195
Query: 251 SILMLANGSVLHHGTVD 267
+ ++ NG ++ G +
Sbjct: 196 EVAVMLNGRIVEKGKLK 212
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 61.5 bits (148), Expect = 1e-11
Identities = 19/194 (9%), Positives = 52/194 (26%), Gaps = 32/194 (16%)
Query: 74 LAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTV 133
+ I G G GK++L++ + +L ++ + + + R
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKR--------TGFRIITTEG 54
Query: 134 EETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGF 193
++ + S + + + +
Sbjct: 55 KKKIFSSKFFTSKKLVGSYGV--------------------NVQYFEELAIPILERAYRE 94
Query: 194 DVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSIL 253
KV+I+DE + + D+++ + V+ +I + I
Sbjct: 95 AKKDRRKVIIIDEIGKMELFSK--KFRDLVRQIMHDPNVNVVATIPIRDV--HPLVKEIR 150
Query: 254 MLANGSVLHHGTVD 267
L ++ +
Sbjct: 151 RLPGAVLIELTPEN 164
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 643 | |||
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.88 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.75 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 99.66 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.62 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.41 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 99.24 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 98.38 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 98.34 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 98.25 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 97.87 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 97.67 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.58 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.41 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.26 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 97.18 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 97.17 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.15 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 97.05 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.99 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.99 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 96.93 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.92 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 96.91 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.86 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 96.81 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 96.78 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.76 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.75 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.73 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.72 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 96.65 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.65 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 96.62 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 96.61 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.61 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 96.59 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.55 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 96.54 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 96.51 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 96.5 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 96.49 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 96.49 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 96.48 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 96.38 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 96.27 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 96.26 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 96.24 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 96.23 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 96.22 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 96.22 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 96.17 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 96.16 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 96.15 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.12 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 96.11 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 96.08 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 96.08 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 96.06 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 96.05 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 96.04 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 95.99 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 95.98 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 95.96 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 95.95 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 95.94 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 95.94 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 95.92 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 95.91 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 95.9 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 95.9 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 95.88 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 95.87 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 95.86 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 95.85 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 95.82 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 95.8 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 95.78 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 95.76 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 95.73 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 95.71 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 95.71 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 95.7 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 95.7 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 95.65 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 95.63 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 95.58 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 95.57 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 95.57 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 95.56 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 95.56 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 95.53 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 95.51 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 95.49 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.49 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 95.45 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.44 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 95.43 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 95.43 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.42 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 95.42 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 95.42 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 95.31 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 95.31 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 95.3 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 95.29 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 95.28 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 95.27 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 95.19 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 95.04 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 95.03 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 94.95 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 94.91 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 94.89 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.84 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.83 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 94.81 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 94.8 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 94.79 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 94.77 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 94.75 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 94.67 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 94.65 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 94.49 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 94.46 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 94.45 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 94.45 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 94.43 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 94.39 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 94.37 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 94.31 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 94.31 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 94.3 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 94.24 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 94.19 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 94.16 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 94.15 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 94.13 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 94.05 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 94.03 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 94.02 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 93.99 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 93.97 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 93.89 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 93.82 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 93.76 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 93.76 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 93.74 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 93.67 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 93.67 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 93.67 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 93.61 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 93.59 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 93.59 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 93.58 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 93.54 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 93.53 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.51 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 93.45 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 93.44 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 93.44 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 93.4 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.34 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 93.31 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 93.26 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 93.26 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 93.24 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 93.23 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 93.23 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 93.17 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 93.16 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 93.11 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 93.08 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 93.0 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 92.9 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 92.87 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 92.85 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 92.82 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 92.79 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 92.79 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 92.68 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 92.67 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 92.65 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 92.62 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 92.59 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 92.58 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 92.5 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 92.44 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 92.4 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 92.38 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 92.36 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 92.32 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 92.32 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 92.23 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 92.2 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 92.19 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 92.12 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 92.01 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 91.87 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 91.64 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 91.63 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 91.47 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 91.39 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 91.3 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 91.11 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 91.09 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 90.86 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 90.85 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 90.39 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 90.25 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 90.17 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 89.82 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 89.72 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 89.58 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 89.57 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 88.81 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 88.69 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 88.62 | |
| d1ii2a1 | 323 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 88.58 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 88.38 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 88.19 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 87.46 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 87.38 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 87.3 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 86.86 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 86.63 | |
| d1lkxa_ | 684 | Myosin S1, motor domain {Dictyostelium discoideum, | 85.99 | |
| d1d0xa2 | 712 | Myosin S1, motor domain {Dictyostelium discoideum | 85.2 | |
| d1br2a2 | 710 | Myosin S1, motor domain {Chicken (Gallus gallus), | 85.0 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 84.13 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 83.99 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 83.91 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 83.28 | |
| d2mysa2 | 794 | Myosin S1, motor domain {Chicken (Gallus gallus), | 82.73 | |
| d1w7ja2 | 730 | Myosin S1, motor domain {Chicken (Gallus gallus), | 81.95 | |
| d1kk8a2 | 789 | Myosin S1, motor domain {Bay scallop (Aequipecten | 81.49 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 80.77 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 80.12 |
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=0 Score=393.47 Aligned_cols=219 Identities=25% Similarity=0.427 Sum_probs=202.6
Q ss_pred HHCCCCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCC-HHHCCCEEEECCC
Q ss_conf 100123232134210010479984680999988999888999998965989996189999970890-3110347898259
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-AQFRKVSGYVTQR 124 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~is~~i~~Ge~~ai~GpsGsGKSTLl~~L~g~~~~~~G~I~~~g~~~~~-~~~r~~~~yV~Q~ 124 (643)
++++++.+.++...+|+|||+++++||+++|+||||||||||+++|+|+++|++|+|.++|++++. ...++.+|||+|+
T Consensus 7 I~v~nlsk~yg~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~ 86 (239)
T d1v43a3 7 VKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQS 86 (239)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC-
T ss_pred EEEEEEEEEECCEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCCCCEEEEEEEC
T ss_conf 99987999999999981306788799899999999982999999997589998787999164135477000158998003
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 88899999999999998704999899999999999999399012231107976787797898999999998409987898
Q 006505 125 DTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLIL 204 (643)
Q Consensus 125 ~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~g~~~~~~lSgGerqRvsia~aL~~~p~illl 204 (643)
+.+|+++||+||+.|++..+ +.++++.+++++++++.++|++.+ +..+..||||||||++||+||+.+|++|+|
T Consensus 87 ~~l~~~ltv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~LSGGq~QRvaiAraL~~~P~iLll 160 (239)
T d1v43a3 87 YAVWPHMTVYENIAFPLKIK-KFPKDEIDKRVRWAAELLQIEELL-----NRYPAQLSGGQRQRVAVARAIVVEPDVLLM 160 (239)
T ss_dssp -----CCCHHHHHHTTCC---CCCHHHHHHHHHHHHHHTTCGGGT-----TSCTTTCCSSCHHHHHHHHHHTTCCSEEEE
T ss_pred HHHCCCCHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCCHHHH-----CCCHHHCCHHHHHHHHHHHHHCCCCCCEEE
T ss_conf 35342220999999999873-999999999999999875985566-----099546999998899997664049982430
Q ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCEEEEECCHHHHHH
Q ss_conf 1999999999999999999999971998999980588558986268799981982898539567999
Q 006505 205 DEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 205 DEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~~~~~~D~i~~l~~G~~~~~G~~~~~~~ 271 (643)
||||+|||+.++.++++.+++++++.|+|++++||++. ++.+++|++++|++|+++..|+++++..
T Consensus 161 DEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~-~a~~~~dri~vm~~G~iv~~G~~~el~~ 226 (239)
T d1v43a3 161 DEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNRGQLLQIGSPTEVYL 226 (239)
T ss_dssp ESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 68866689899989999999998731980799948999-9998699999998999999859999986
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=0 Score=389.71 Aligned_cols=219 Identities=27% Similarity=0.475 Sum_probs=201.6
Q ss_pred HHCCCCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCH-------HHCCCE
Q ss_conf 1001232321342100104799846809999889998889999989659899961899999708903-------110347
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKA-------QFRKVS 118 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~is~~i~~Ge~~ai~GpsGsGKSTLl~~L~g~~~~~~G~I~~~g~~~~~~-------~~r~~~ 118 (643)
++++++++.++...+|+|+|+.+++||+++|+||||||||||+++|+|+.+|++|+|.++|+++... ..++.+
T Consensus 4 i~v~nl~k~yg~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~r~i 83 (240)
T d1g2912 4 VRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDI 83 (240)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSE
T ss_pred EEEEEEEEEECCEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEECCCCHHHHCCCCCCCC
T ss_conf 89986999989999985606688699899999999980999999996487889898999999803566444245322551
Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 89825988899999999999998704999899999999999999399012231107976787797898999999998409
Q 006505 119 GYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHD 198 (643)
Q Consensus 119 ~yV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~g~~~~~~lSgGerqRvsia~aL~~~ 198 (643)
|||+|++.+++.+||+||+.++...+ +.++++.+++++++++.++|++.. +..+..||||||||++||+||+.+
T Consensus 84 g~v~Q~~~L~~~ltV~eni~~~~~~~-~~~~~e~~~~v~~~l~~~~l~~~~-----~~~p~~LSGGqkQRv~IAraL~~~ 157 (240)
T d1g2912 84 AMVFQSYALYPHMTVYDNIAFPLKLR-KVPRQEIDQRVREVAELLGLTELL-----NRKPRELSGGQRQRVALGRAIVRK 157 (240)
T ss_dssp EEECSCCCCCTTSCHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHTCGGGT-----TCCGGGSCHHHHHHHHHHHHHHTC
T ss_pred EECCCCHHHCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCCHHHH-----CCCHHHCCHHHHHHHHHHHHHHCC
T ss_conf 20022122231011667633068772-999899999999999875996676-----299334999999999999998269
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCEEEEECCHHHHHH
Q ss_conf 9878981999999999999999999999971998999980588558986268799981982898539567999
Q 006505 199 PKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 199 p~illlDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~~~~~~D~i~~l~~G~~~~~G~~~~~~~ 271 (643)
|++|+|||||+|||+.++.++++.|+++.++.|+|||+++|+++ ++..++|++++|++|++++.|+++++..
T Consensus 158 P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~-~~~~~~drv~vm~~G~iv~~G~~~el~~ 229 (240)
T d1g2912 158 PQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNRGVLQQVGSPDEVYD 229 (240)
T ss_dssp CSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHH-HHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 98898258876569899989999999998636988999959999-9999699999998999999859999982
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=395.06 Aligned_cols=218 Identities=30% Similarity=0.474 Sum_probs=200.4
Q ss_pred HCCCCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCC-HHHCCCEEEECCCC
Q ss_conf 00123232134210010479984680999988999888999998965989996189999970890-31103478982598
Q 006505 47 KLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-AQFRKVSGYVTQRD 125 (643)
Q Consensus 47 ~~~~~~~~~~~~~iL~~is~~i~~Ge~~ai~GpsGsGKSTLl~~L~g~~~~~~G~I~~~g~~~~~-~~~r~~~~yV~Q~~ 125 (643)
++++++++++...+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ...++.+|||+|++
T Consensus 2 ev~nv~k~yg~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~ 81 (232)
T d2awna2 2 QLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSY 81 (232)
T ss_dssp EEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGGGTCEEEECSSC
T ss_pred EEEEEEEEECCEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHCEEEEECCCC
T ss_conf 99999999899999811177886998999998999829999999965878888889999997788864443222343342
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 88999999999999987049998999999999999993990122311079767877978989999999984099878981
Q 006505 126 TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILD 205 (643)
Q Consensus 126 ~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~g~~~~~~lSgGerqRvsia~aL~~~p~illlD 205 (643)
.+++.+||+||+.|++..+ +.++++.+++++++++.++|.+.. +..+..||||||||++||+||+.+|++++||
T Consensus 82 ~l~~~~tv~eni~~~~~~~-~~~~~~~~~~v~~~l~~~~l~~~~-----~~~~~~LSGGqkQRvaiAraL~~~P~illlD 155 (232)
T d2awna2 82 ALYPHLSVAENMSFGLKLA-GAKKEVINQRVNQVAEVLQLAHLL-----DRKPKALSGGQRQRVAIGRTLVAEPSVFLLD 155 (232)
T ss_dssp CC----------------------CHHHHHHHHHHHHC--------------------------CHHHHHHTCCSEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCCHHHH-----HCCHHHCCHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 0264333788978999875-998899999999999757886566-----4896569999999999999970399889975
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCEEEEECCHHHHHH
Q ss_conf 999999999999999999999971998999980588558986268799981982898539567999
Q 006505 206 EPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 206 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~~~~~~D~i~~l~~G~~~~~G~~~~~~~ 271 (643)
|||+|||+.++.++++.|+++.++.|+|||+++|++. ++.+++||+++|++|+++..|+++++..
T Consensus 156 EPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~-~a~~~~dri~vm~~G~iv~~G~~~el~~ 220 (232)
T d2awna2 156 EPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDAGRVAQVGKPLELYH 220 (232)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEECCEEEEEECHHHHHH
T ss_conf 8887889889989999999998742987999948999-9999699999997999999808999973
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=0 Score=390.06 Aligned_cols=218 Identities=27% Similarity=0.444 Sum_probs=197.4
Q ss_pred HCCCCCCCC--CCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCC------HHHCCCE
Q ss_conf 001232321--34210010479984680999988999888999998965989996189999970890------3110347
Q 006505 47 KLEEAADSD--GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK------AQFRKVS 118 (643)
Q Consensus 47 ~~~~~~~~~--~~~~iL~~is~~i~~Ge~~ai~GpsGsGKSTLl~~L~g~~~~~~G~I~~~g~~~~~------~~~r~~~ 118 (643)
+++++++.| +...+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ...|+.+
T Consensus 5 ~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr~i 84 (242)
T d1oxxk2 5 IVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKI 84 (242)
T ss_dssp EEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCE
T ss_pred EEEEEEEEECCCCEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEECCCHHHCCHHHCCC
T ss_conf 99757999889998998040789879989999989998099999999758688874599999995137311153120451
Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 89825988899999999999998704999899999999999999399012231107976787797898999999998409
Q 006505 119 GYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHD 198 (643)
Q Consensus 119 ~yV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~g~~~~~~lSgGerqRvsia~aL~~~ 198 (643)
|||+|+..++|++||+||+.|++..+ +.++++.+++++++++.+||++.. +..+..|||||||||+|||||+.+
T Consensus 85 g~vfQ~~~L~p~ltv~eni~~~l~~~-~~~~~~~~~~v~~~l~~~gL~~~~-----~~~p~~LSGGqkQRvaiARaL~~~ 158 (242)
T d1oxxk2 85 GMVFQTWALYPNLTAFENIAFPLTNM-KMSKEEIRKRVEEVAKILDIHHVL-----NHFPRELSGAQQQRVALARALVKD 158 (242)
T ss_dssp EEEETTSCCCTTSCHHHHHHGGGTTS-SCCHHHHHHHHHHHHHHTTCGGGT-----TSCGGGSCHHHHHHHHHHHHHTTC
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHCCHHHHH-----HCCHHHCCHHHHHHHHHHHHHHHC
T ss_conf 47730433466665777766556761-379999999999998665917666-----489545999998589987577604
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCEEEEECCHHHHHH
Q ss_conf 9878981999999999999999999999971998999980588558986268799981982898539567999
Q 006505 199 PKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 199 p~illlDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~~~~~~D~i~~l~~G~~~~~G~~~~~~~ 271 (643)
|++||+||||+|||+.++.++++.|+++.++.|+|+|++||+++ ++.+++|++++|++|+++..|+++++..
T Consensus 159 P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~-~~~~~~dri~vm~~G~iv~~g~~~el~~ 230 (242)
T d1oxxk2 159 PSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVKGKLVQVGKPEDLYD 230 (242)
T ss_dssp CSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHH-HHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 66145447866799899889989999998635987999979999-9999699999998999999869999986
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=385.86 Aligned_cols=217 Identities=28% Similarity=0.448 Sum_probs=195.0
Q ss_pred HCCCCCCCCCCC----CEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCC------HHHCC
Q ss_conf 001232321342----10010479984680999988999888999998965989996189999970890------31103
Q 006505 47 KLEEAADSDGVR----RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK------AQFRK 116 (643)
Q Consensus 47 ~~~~~~~~~~~~----~iL~~is~~i~~Ge~~ai~GpsGsGKSTLl~~L~g~~~~~~G~I~~~g~~~~~------~~~r~ 116 (643)
+++++.+.++.. .+|+|+|+.+++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ..+|+
T Consensus 3 ~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~rr 82 (240)
T d3dhwc1 3 KLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARR 82 (240)
T ss_dssp EEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHHH
T ss_pred EEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEECCEEEEECCHHHHHHHHC
T ss_conf 99827999699981489861505788699799998999898889999875886366773288676852087555115541
Q ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 47898259888999999999999987049998999999999999993990122311079767877978989999999984
Q 006505 117 VSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVI 196 (643)
Q Consensus 117 ~~~yV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~g~~~~~~lSgGerqRvsia~aL~ 196 (643)
.+|||||+..+++.+||+||+.+++..+ +.++++.++++.++++.+||++.. +..+..|||||||||+||+||+
T Consensus 83 ~ig~VfQ~~~l~~~~tv~eni~~~l~~~-~~~~~~~~~~v~~~L~~vgL~~~~-----~~~~~~LSGG~~QRvaiAraL~ 156 (240)
T d3dhwc1 83 QIGMIFQHFNLLSSRTVFGNVALPLELD-NTPKDEVKRRVTELLSLVGLGDKH-----DSYPSNLSGGQKQRVAIARALA 156 (240)
T ss_dssp HEEECCSSCCCCTTSBHHHHHHHHHHTT-TCCTTHHHHHHHHHHHHHSTTTTT-----SSCBSCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCCCHHH-----HCCHHHCCHHHHHHHHHHHHHC
T ss_conf 6643022522279964999999999984-999899999999999976990355-----4894349999998999864010
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCEEEEECCHHHHH
Q ss_conf 09987898199999999999999999999997199899998058855898626879998198289853956799
Q 006505 197 HDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 197 ~~p~illlDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~~~~~~D~i~~l~~G~~~~~G~~~~~~ 270 (643)
.+|++|++||||+|||+.++.++++.|+++.++.|+||++++|++. .+..++||+++|++|++++.|+++++.
T Consensus 157 ~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~-~~~~~~dri~vl~~G~iv~~G~~~ei~ 229 (240)
T d3dhwc1 157 SNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISNGELIEQDTVSEVF 229 (240)
T ss_dssp TCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHH-HHHHHCSEEEEEETTEEEEEEETTTTT
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHH-HHHHHCCEEEEEECCEEEEECCHHHHH
T ss_conf 5898687446556589888567999999998646978999838999-999869999999799999987999997
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=0 Score=385.20 Aligned_cols=215 Identities=28% Similarity=0.465 Sum_probs=194.7
Q ss_pred HHCCCCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCC-HHHCCCEEEECCC
Q ss_conf 100123232134210010479984680999988999888999998965989996189999970890-3110347898259
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-AQFRKVSGYVTQR 124 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~is~~i~~Ge~~ai~GpsGsGKSTLl~~L~g~~~~~~G~I~~~g~~~~~-~~~r~~~~yV~Q~ 124 (643)
+++++++++++. .+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ...++.+|||+|+
T Consensus 2 i~v~nlsk~y~~-~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~~r~ig~v~Q~ 80 (229)
T d3d31a2 2 IEIESLSRKWKN-FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQN 80 (229)
T ss_dssp EEEEEEEEECSS-CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTT
T ss_pred EEEEEEEEEECC-EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHCCEEECCC
T ss_conf 899989999499-7884337898799899999899982999999996476888788999567346521657405615121
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 88899999999999998704999899999999999999399012231107976787797898999999998409987898
Q 006505 125 DTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLIL 204 (643)
Q Consensus 125 ~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~g~~~~~~lSgGerqRvsia~aL~~~p~illl 204 (643)
..+|+++||+||+.|+...+.... .+++.++++.+++++.. +..+..|||||||||+|||||+.+|++|||
T Consensus 81 ~~l~~~~tV~enl~~~~~~~~~~~----~~~~~~~l~~~~l~~~~-----~~~~~~LSGG~~QRvaiAraL~~~P~iLll 151 (229)
T d3d31a2 81 YSLFPHMNVKKNLEFGMRMKKIKD----PKRVLDTARDLKIEHLL-----DRNPLTLSGGEQQRVALARALVTNPKILLL 151 (229)
T ss_dssp CCCCTTSCHHHHHHHHHHHHCCCC----HHHHHHHHHHTTCTTTT-----TSCGGGSCHHHHHHHHHHHHTTSCCSEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHCCCCH----HHHHHHHHHHHCCHHHH-----HCCHHHCCHHHHCCHHHHHHHHCCCCCEEE
T ss_conf 111746657788888776405538----99999999982565557-----589554799984014030434436771443
Q ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCEEEEECCHHHHHH
Q ss_conf 1999999999999999999999971998999980588558986268799981982898539567999
Q 006505 205 DEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 205 DEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~~~~~~D~i~~l~~G~~~~~G~~~~~~~ 271 (643)
||||+|||+.++.++.+.++++.++.|.||++++|+++ ++.+++|++++|.+|++++.|+++++..
T Consensus 152 DEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~-~~~~~~drv~vm~~G~iv~~g~~~el~~ 217 (229)
T d3d31a2 152 DEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMDGKLIQVGKPEEIFE 217 (229)
T ss_dssp ESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESSSCEEEEECHHHHHS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHH-HHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 47876799899999999999998647968999749999-9999699999997999999869999986
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=372.03 Aligned_cols=220 Identities=28% Similarity=0.432 Sum_probs=199.0
Q ss_pred HHCCCCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCC--------------
Q ss_conf 100123232134210010479984680999988999888999998965989996189999970890--------------
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-------------- 111 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~is~~i~~Ge~~ai~GpsGsGKSTLl~~L~g~~~~~~G~I~~~g~~~~~-------------- 111 (643)
++++++.+.++...+|+||||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++..
T Consensus 3 Lev~nl~k~yg~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~~~~ 82 (258)
T d1b0ua_ 3 LHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKN 82 (258)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHH
T ss_pred EEEEEEEEEECCEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEEECCCCCCCHHCCCCCHH
T ss_conf 99997899989999881506688699799999899982999999997476678997799999933677520000235176
Q ss_pred --HHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHH
Q ss_conf --311034789825988899999999999998704999899999999999999399012231107976787797898999
Q 006505 112 --AQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRV 189 (643)
Q Consensus 112 --~~~r~~~~yV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~g~~~~~~lSgGerqRv 189 (643)
...++.+|||+|+..+++.+||.||+.++.....+.++++.++++.++++.+++.+... +..+..|||||||||
T Consensus 83 ~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----~~~p~~LSGG~~QRv 158 (258)
T d1b0ua_ 83 QLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQ----GKYPVHLSGGQQQRV 158 (258)
T ss_dssp HHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHH----TSCGGGSCHHHHHHH
T ss_pred HHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHH----CCCCCCCCHHHHHHH
T ss_conf 7999745448998332314110102136565787629998999999999999829952443----068220567788898
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCEEEEECCHHHH
Q ss_conf 99999840998789819999999999999999999999719989999805885589862687999819828985395679
Q 006505 190 SIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLL 269 (643)
Q Consensus 190 sia~aL~~~p~illlDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~~~~~~D~i~~l~~G~~~~~G~~~~~ 269 (643)
+||+||+.+|+++++||||+|||+.++.++++.|+++++ +|+||++++|++. ++..++||+++|.+|++++.|+++++
T Consensus 159 ~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~-~g~til~vtHdl~-~~~~~adri~vm~~G~iv~~g~~~ev 236 (258)
T d1b0ua_ 159 SIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE-EGKTMVVVTHEMG-FARHVSSHVIFLHQGKIEEEGDPEQV 236 (258)
T ss_dssp HHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-TTCCEEEECSCHH-HHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCC-CCCCEEEEECCHH-HHHHHCCEEEEEECCEEEEECCHHHH
T ss_conf 999998439987885245556887888899876554103-6883389948999-99986999999979999998499999
Q ss_pred HH
Q ss_conf 99
Q 006505 270 SV 271 (643)
Q Consensus 270 ~~ 271 (643)
..
T Consensus 237 ~~ 238 (258)
T d1b0ua_ 237 FG 238 (258)
T ss_dssp HH
T ss_pred HH
T ss_conf 83
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=0 Score=368.62 Aligned_cols=232 Identities=28% Similarity=0.430 Sum_probs=207.0
Q ss_pred HHCCCCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCC--HHHCCCEEEECC
Q ss_conf 100123232134210010479984680999988999888999998965989996189999970890--311034789825
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK--AQFRKVSGYVTQ 123 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~is~~i~~Ge~~ai~GpsGsGKSTLl~~L~g~~~~~~G~I~~~g~~~~~--~~~r~~~~yV~Q 123 (643)
+.++++.++++.+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ...++.++||||
T Consensus 3 I~v~nl~k~yg~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~i~~vpq 82 (238)
T d1vpla_ 3 VVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPE 82 (238)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECT
T ss_pred EEEEEEEEEECCEEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCHHHHHHHEEEEEE
T ss_conf 89995899999999980625688489799999999999999999996698878887999867244683988721867500
Q ss_pred CCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 98889999999999999870499989999999999999939901223110797678779789899999999840998789
Q 006505 124 RDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLI 203 (643)
Q Consensus 124 ~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~g~~~~~~lSgGerqRvsia~aL~~~p~ill 203 (643)
++.+++++|+.||+.|.+.++ +.++.+..+.++.+++.+++.+..+ ..++.+|||||||++||+||+.+|++++
T Consensus 83 ~~~~~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~lSgG~~qrv~iA~al~~~p~ill 156 (238)
T d1vpla_ 83 EAGAYRNMQGIEYLRFVAGFY-ASSSSEIEEMVERATEIAGLGEKIK-----DRVSTYSKGMVRKLLIARALMVNPRLAI 156 (238)
T ss_dssp TCCCCTTSBHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHCCGGGGG-----SBGGGCCHHHHHHHHHHHHHTTCCSEEE
T ss_pred CCCCCCCCCHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCCHHHHH-----HHHHHCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 154687866778889899861-7998999999999998679788885-----0453379989899999999865999887
Q ss_pred EECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCEEEEECCHHHHHHHHHHCCCCCCCC
Q ss_conf 81999999999999999999999971998999980588558986268799981982898539567999998749999999
Q 006505 204 LDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSVSLRMMGLQLPMH 283 (643)
Q Consensus 204 lDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~~~~~~D~i~~l~~G~~~~~G~~~~~~~~f~~~g~~~p~~ 283 (643)
|||||+|||+.++.++.+++++++++ |+||++++|+++ ++..+|||+++|++|++++.|+++++...+. .
T Consensus 157 LDEPt~gLD~~~~~~i~~~i~~~~~~-g~tii~~tH~l~-~~~~~~drv~vl~~G~iv~~g~~~el~~~~~--------~ 226 (238)
T d1vpla_ 157 LDEPTSGLDVLNAREVRKILKQASQE-GLTILVSSHNML-EVEFLCDRIALIHNGTIVETGTVEELKERYK--------A 226 (238)
T ss_dssp EESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEEECCHH-HHTTTCSEEEEEETTEEEEEEEHHHHHHHTT--------C
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCHH-HHHHHCCEEEEEECCEEEEECCHHHHHHCCC--------C
T ss_conf 33798897989999999999999965-998999959899-9999699999998999999928999986528--------7
Q ss_pred CCHHHHHHHH
Q ss_conf 9946799883
Q 006505 284 VNVVEFAIES 293 (643)
Q Consensus 284 ~n~ad~~l~~ 293 (643)
.+..+.+.++
T Consensus 227 ~~~~~~f~~~ 236 (238)
T d1vpla_ 227 QNIEEVFEEV 236 (238)
T ss_dssp SSHHHHHHHH
T ss_pred CHHHHHHHHH
T ss_conf 6699999985
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=0 Score=369.25 Aligned_cols=213 Identities=28% Similarity=0.489 Sum_probs=186.6
Q ss_pred HCCCCCCCCCC----CCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCC---H---HH-C
Q ss_conf 00123232134----210010479984680999988999888999998965989996189999970890---3---11-0
Q 006505 47 KLEEAADSDGV----RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---A---QF-R 115 (643)
Q Consensus 47 ~~~~~~~~~~~----~~iL~~is~~i~~Ge~~ai~GpsGsGKSTLl~~L~g~~~~~~G~I~~~g~~~~~---~---~~-r 115 (643)
+++++.+.|+. ..+|+|+|+.+++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. . .+ +
T Consensus 3 ~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r~ 82 (230)
T d1l2ta_ 3 KLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRR 82 (230)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHH
T ss_pred EEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCEEEECCEECCCCCHHHCCHHHC
T ss_conf 99907999489982089871337788499799998899998216557506887777662699999857688555123125
Q ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHCCCHH-HHHHHCCCCCCCCCCHHHHHHHHHH
Q ss_conf 347898259888999999999999987049--9989999999999999939901-2231107976787797898999999
Q 006505 116 KVSGYVTQRDTLFPLLTVEETLMFSAKLRL--RLPQAQLRARVKSLVKELGLEH-VAMARVGDDRVRGISGGERRRVSIG 192 (643)
Q Consensus 116 ~~~~yV~Q~~~l~~~lTV~E~l~f~~~l~~--~~~~~~~~~~v~~~l~~lgL~~-~~~~~~g~~~~~~lSgGerqRvsia 192 (643)
+.+|||+|++.+++.+||+||+.++...+. ..+.++..+++.+.++.++|.+ .. +..|..|||||||||+||
T Consensus 83 ~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----~~~p~~LSGGqkQRvaIA 157 (230)
T d1l2ta_ 83 DKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFA-----NHKPNQLSGGQQQRVAIA 157 (230)
T ss_dssp HHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGT-----TCCGGGSCHHHHHHHHHH
T ss_pred CEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHH-----CCCHHHCCHHHHHHHHHH
T ss_conf 557788041241768668887757888722478999999999999887624234553-----488023899999999987
Q ss_pred HHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCEEEEECCH
Q ss_conf 99840998789819999999999999999999999719989999805885589862687999819828985395
Q 006505 193 FDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTV 266 (643)
Q Consensus 193 ~aL~~~p~illlDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~~~~~~D~i~~l~~G~~~~~G~~ 266 (643)
+||+.+|++|++||||+|||+.++.++++.|+++.++.|+|+|+++|+++ ..++|||+++|.+|+++..|++
T Consensus 158 raL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~--~a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 158 RALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHH--HHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHH--HHHHCCEEEEEECCEEEEECCC
T ss_conf 56522788899468765469899999999999999843999999878889--9986998999989999995257
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=0 Score=365.50 Aligned_cols=218 Identities=24% Similarity=0.388 Sum_probs=191.7
Q ss_pred HHHCCCCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCC---HH-HCCCEEE
Q ss_conf 3100123232134210010479984680999988999888999998965989996189999970890---31-1034789
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQ-FRKVSGY 120 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~is~~i~~Ge~~ai~GpsGsGKSTLl~~L~g~~~~~~G~I~~~g~~~~~---~~-~r~~~~y 120 (643)
+++++++.+.++...+|+|+||.+++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. .. .|..++|
T Consensus 6 ~Lev~~l~k~yg~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~gi~~ 85 (240)
T d1ji0a_ 6 VLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIAL 85 (240)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEE
T ss_pred EEEEEEEEEEECCEEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHCCCC
T ss_conf 79996189998998888302578889979999999998599999999678888803898424434466088888742355
Q ss_pred ECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC-CCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 8259888999999999999987049998999999999999993-990122311079767877978989999999984099
Q 006505 121 VTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKEL-GLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDP 199 (643)
Q Consensus 121 V~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~~g~~~~~~lSgGerqRvsia~aL~~~p 199 (643)
++|+..+|+.+||+||+.+.+.... .++..++.++++++.+ ++.+.. +..+..||||||||++||+||+.+|
T Consensus 86 ~~q~~~l~~~ltv~en~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~LSGG~~Qrv~iAraL~~~P 158 (240)
T d1ji0a_ 86 VPEGRRIFPELTVYENLMMGAYNRK--DKEGIKRDLEWIFSLFPRLKERL-----KQLGGTLSGGEQQMLAIGRALMSRP 158 (240)
T ss_dssp ECSSCCCCTTSBHHHHHHGGGTTCC--CSSHHHHHHHHHHHHCHHHHTTT-----TSBSSSSCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHCHHHHH-----HCCHHHCCHHHHHHHHHHHHHHHCC
T ss_conf 6765545776369999998887327--88899999999998741768887-----5854338999999999999998299
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCEEEEECCHHHHHH
Q ss_conf 878981999999999999999999999971998999980588558986268799981982898539567999
Q 006505 200 KVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 200 ~illlDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~~~~~~D~i~~l~~G~~~~~G~~~~~~~ 271 (643)
++|+|||||+|||+.++.++.+.+++++++ |+||++++|+++ ++.+++|++++|++|++++.|+++++.+
T Consensus 159 ~lLllDEPt~gLD~~~~~~i~~~i~~l~~~-g~til~~tH~l~-~~~~~~drv~vl~~G~iv~~g~~~el~~ 228 (240)
T d1ji0a_ 159 KLLMMDEPSLGLAPILVSEVFEVIQKINQE-GTTILLVEQNAL-GALKVAHYGYVLETGQIVLEGKASELLD 228 (240)
T ss_dssp SEEEEECTTTTCCHHHHHHHHHHHHHHHHT-TCCEEEEESCHH-HHHHHCSEEEEEETTEEEEEEEHHHHHT
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCHH-HHHHHCCEEEEEECCEEEEECCHHHHHC
T ss_conf 874003988679999999999999999968-998999958899-9999699999998999999848999842
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=0 Score=365.13 Aligned_cols=221 Identities=22% Similarity=0.387 Sum_probs=195.7
Q ss_pred HHHCCCCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCC---HH-HCCCEEE
Q ss_conf 3100123232134210010479984680999988999888999998965989996189999970890---31-1034789
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQ-FRKVSGY 120 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~is~~i~~Ge~~ai~GpsGsGKSTLl~~L~g~~~~~~G~I~~~g~~~~~---~~-~r~~~~y 120 (643)
+++++++++.++...+|+|||+++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .. .+..++|
T Consensus 4 iL~v~nlsk~yg~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi~~ 83 (254)
T d1g6ha_ 4 ILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVR 83 (254)
T ss_dssp EEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEE
T ss_pred EEEEEEEEEEECCEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCHHHHHHHHHCCCC
T ss_conf 69997789997996887121799889979999999998499999999779768873799999966405699999833872
Q ss_pred ECCCCCCCCCCCHHHHHHHHHHHCC-----------C-CCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHH
Q ss_conf 8259888999999999999987049-----------9-989999999999999939901223110797678779789899
Q 006505 121 VTQRDTLFPLLTVEETLMFSAKLRL-----------R-LPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRR 188 (643)
Q Consensus 121 V~Q~~~l~~~lTV~E~l~f~~~l~~-----------~-~~~~~~~~~v~~~l~~lgL~~~~~~~~g~~~~~~lSgGerqR 188 (643)
+||+..+++.+||.||+.++...+. . ..+++..+++.++++.+++.+.. +..+..||||||||
T Consensus 84 v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~LSgG~~Qr 158 (254)
T d1g6ha_ 84 TFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLY-----DRKAGELSGGQMKL 158 (254)
T ss_dssp CCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGT-----TSBGGGSCHHHHHH
T ss_pred CCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHC-----CCCHHHCCCHHHHH
T ss_conf 5776424788742321430133303450456654213532899999999998761963020-----59535699188889
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCEEEEECCHHH
Q ss_conf 99999984099878981999999999999999999999971998999980588558986268799981982898539567
Q 006505 189 VSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDL 268 (643)
Q Consensus 189 vsia~aL~~~p~illlDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~~~~~~D~i~~l~~G~~~~~G~~~~ 268 (643)
|+||+||+.+|++|+|||||+|||+.++.++.+.|+++++ +|+||++++|+++ ++.++|||+++|++|+++..|++++
T Consensus 159 v~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~-~g~til~vsHdl~-~~~~~~Drv~vm~~G~iv~~g~~~e 236 (254)
T d1g6ha_ 159 VEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA-KGITFLIIEHRLD-IVLNYIDHLYVMFNGQIIAEGRGEE 236 (254)
T ss_dssp HHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSCCS-TTGGGCSEEEEEETTEEEEEEESHH
T ss_pred HHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCHH-HHHHHCCEEEEEECCEEEEEECHHH
T ss_conf 9999999759272324397656999999999999999997-8998999947699-9998699999996998999966899
Q ss_pred HHHH
Q ss_conf 9999
Q 006505 269 LSVS 272 (643)
Q Consensus 269 ~~~~ 272 (643)
....
T Consensus 237 ~~~~ 240 (254)
T d1g6ha_ 237 EIKN 240 (254)
T ss_dssp HHHH
T ss_pred HHHC
T ss_conf 8654
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=0 Score=365.46 Aligned_cols=207 Identities=27% Similarity=0.497 Sum_probs=186.4
Q ss_pred CCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCC-HHHCCCEEEECCCCCCCCCC
Q ss_conf 32134210010479984680999988999888999998965989996189999970890-31103478982598889999
Q 006505 53 DSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-AQFRKVSGYVTQRDTLFPLL 131 (643)
Q Consensus 53 ~~~~~~~iL~~is~~i~~Ge~~ai~GpsGsGKSTLl~~L~g~~~~~~G~I~~~g~~~~~-~~~r~~~~yV~Q~~~l~~~l 131 (643)
++.+...+ |+|+.++ +|+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ...++.+|||+|++.++|++
T Consensus 9 k~~g~~~~--~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~l 85 (240)
T d2onka1 9 KRLGNFRL--NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHL 85 (240)
T ss_dssp EEETTEEE--EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTS
T ss_pred EEECCEEE--EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCCEEECCCHHHCCCC
T ss_conf 99899999--9999749-97999997999809999999973999896289999999886998992852252314435220
Q ss_pred CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 99999999987049998999999999999993990122311079767877978989999999984099878981999999
Q 006505 132 TVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGL 211 (643)
Q Consensus 132 TV~E~l~f~~~l~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~g~~~~~~lSgGerqRvsia~aL~~~p~illlDEPTsgL 211 (643)
||+||+.|+.+ ..++.+.+++++++++.+||.+.. +..+..|||||||||+||+||+.+|++++|||||+||
T Consensus 86 tV~enl~~~l~---~~~~~~~~~~v~~~l~~~gl~~~~-----~~~~~~LSGG~kQRvaiAral~~~P~illlDEPts~L 157 (240)
T d2onka1 86 SVYRNIAYGLR---NVERVERDRRVREMAEKLGIAHLL-----DRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAV 157 (240)
T ss_dssp CHHHHHHTTCT---TSCHHHHHHHHHHHHHTTTCTTTT-----TCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSC
T ss_pred HHHHHHHHHHC---CCCHHHHHHHHHHHHHHCCCHHHH-----HCCHHHCCHHHHHHHHHHHHHHCCCCCEEECCCCCCC
T ss_conf 15576665323---367788999999999863837566-----5794448999989999987775167706752865558
Q ss_pred CHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCEEEEECCHHHHHH
Q ss_conf 999999999999999971998999980588558986268799981982898539567999
Q 006505 212 DSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 212 D~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~~~~~~D~i~~l~~G~~~~~G~~~~~~~ 271 (643)
|+.++..+.+.+++++++.|.|||+++|+++ ++.+++|++++|++|+++..|+++++..
T Consensus 158 D~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~-~~~~~adri~vm~~G~ii~~G~~~el~~ 216 (240)
T d2onka1 158 DLKTKGVLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLNGRIVEKGKLKELFS 216 (240)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEECCEEEEEECHHHHHC
T ss_conf 8799999999999998743976999818999-9999699999998999999906999832
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=354.69 Aligned_cols=219 Identities=26% Similarity=0.444 Sum_probs=179.1
Q ss_pred HHCCCCCCCCC---CCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCC---CHHHCCCEE
Q ss_conf 10012323213---421001047998468099998899988899999896598999618999997089---031103478
Q 006505 46 SKLEEAADSDG---VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPID---KAQFRKVSG 119 (643)
Q Consensus 46 ~~~~~~~~~~~---~~~iL~~is~~i~~Ge~~ai~GpsGsGKSTLl~~L~g~~~~~~G~I~~~g~~~~---~~~~r~~~~ 119 (643)
++.++....|. .+.+|+|+|+.+++||+++|+||||||||||+++|+|+++|++|+|.+||+++. ...+|+.++
T Consensus 12 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 91 (251)
T d1jj7a_ 12 VQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQVA 91 (251)
T ss_dssp EEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEE
T ss_pred EEEEEEEEECCCCCCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCHHHHHHHHHHHH
T ss_conf 99999899889999997674438998499899999999984999999986143787689988998531101378887765
Q ss_pred EECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHH-----HHHHHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 982598889999999999999870499989999-----999999999939901223110797678779789899999999
Q 006505 120 YVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQL-----RARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFD 194 (643)
Q Consensus 120 yV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~-----~~~v~~~l~~lgL~~~~~~~~g~~~~~~lSgGerqRvsia~a 194 (643)
||+|++.+|+. ||+||+.++...+ ....+. .....+.++.+ .+-.++.+ ++.+..||||||||++||||
T Consensus 92 ~v~Q~~~lf~~-tv~eni~~g~~~~--~~~~~~~~~~~~~~~~~~i~~l--~~g~~~~i-~~~~~~LSGGqkQRvaiARa 165 (251)
T d1jj7a_ 92 AVGQEPQVFGR-SLQENIAYGLTQK--PTMEEITAAAVKSGAHSFISGL--PQGYDTEV-DEAGSQLSGGQRQAVALARA 165 (251)
T ss_dssp EECSSCCCCSS-BHHHHHHCSCSSC--CCHHHHHHHHHHHTCHHHHHTS--TTGGGCBC-CSSCSSSCHHHHHHHHHHHH
T ss_pred HCCCCCCCCCC-CHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHHC--CCCCHHHH-HCCCCCCCHHHCEEEEEEEC
T ss_conf 40456500276-3465545421013--0278899999999899999856--12111367-51676689547048998604
Q ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCEEEEECCHHHHHHH
Q ss_conf 840998789819999999999999999999999719989999805885589862687999819828985395679999
Q 006505 195 VIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSVS 272 (643)
Q Consensus 195 L~~~p~illlDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~~~~~~D~i~~l~~G~~~~~G~~~~~~~~ 272 (643)
|+.+|++++|||||++||+.++.++++.|+++.++.++|+|+++|+++ ..+.+|+|++|++|++++.|+++++.+.
T Consensus 166 l~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~--~~~~aDrI~vl~~G~iv~~Gt~~eLl~~ 241 (251)
T d1jj7a_ 166 LIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLS--LVEQADHILFLEGGAIREGGTHQQLMEK 241 (251)
T ss_dssp HTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHH--HHHTCSEEEEEETTEEEEEECHHHHHHH
T ss_pred CCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH--HHHHCCEEEEEECCEEEEECCHHHHHHC
T ss_conf 456870787167576568536899999999976506989999959799--9985999999989999998899999859
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=347.22 Aligned_cols=210 Identities=27% Similarity=0.438 Sum_probs=173.8
Q ss_pred CCCCCCC--CCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCC---CHHHCCCEEEECC
Q ss_conf 1232321--3421001047998468099998899988899999896598999618999997089---0311034789825
Q 006505 49 EEAADSD--GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPID---KAQFRKVSGYVTQ 123 (643)
Q Consensus 49 ~~~~~~~--~~~~iL~~is~~i~~Ge~~ai~GpsGsGKSTLl~~L~g~~~~~~G~I~~~g~~~~---~~~~r~~~~yV~Q 123 (643)
++++..| +.+.+|+|+|+.+++||.+||+||||||||||+++|+|+++|++|+|.+||+++. ...+|+.++||+|
T Consensus 5 ~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q 84 (241)
T d2pmka1 5 RNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQ 84 (241)
T ss_dssp EEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECS
T ss_pred EEEEEEECCCCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEEECCCCHHHHHCEEEEEEC
T ss_conf 99999908999603742489984999999999999989999999973578888899999999440024655352889824
Q ss_pred CCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCH-------HHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 9888999999999999987049998999999999999993990-------122311079767877978989999999984
Q 006505 124 RDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLE-------HVAMARVGDDRVRGISGGERRRVSIGFDVI 196 (643)
Q Consensus 124 ~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~~g~~~~~~lSgGerqRvsia~aL~ 196 (643)
++.+|+. ||+||+.++.. ..+.++ +.+.++..++. .-.++.+ ++.+..||||||||++|||||+
T Consensus 85 ~~~lf~~-Ti~eNi~~~~~---~~~~~~----~~~~~~~~~~~~~i~~~~~~~~t~i-~~~g~~LSGGq~QRvalARal~ 155 (241)
T d2pmka1 85 DNVLLNR-SIIDNISLANP---GMSVEK----VIYAAKLAGAHDFISELREGYNTIV-GEQGAGLSGGQRQRIAIARALV 155 (241)
T ss_dssp SCCCTTS-BHHHHHCTTST---TCCHHH----HHHHHHHHTCHHHHTTSTTGGGSBC-STTTTCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCC-CCCCCCCCCCC---CCCHHH----HHHHHHHHHHHHHHHHHHCCHHHHC-CCCCCCCCHHHHHHHHHHHHHH
T ss_conf 4655784-00035223575---543888----9999999755788876320134432-7878866988989875443444
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCEEEEECCHHHHHH
Q ss_conf 099878981999999999999999999999971998999980588558986268799981982898539567999
Q 006505 197 HDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 197 ~~p~illlDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~~~~~~D~i~~l~~G~~~~~G~~~~~~~ 271 (643)
.+|++++||||||+||+.++..+++.|+++.+ ++|+|+++|+++ ..+.+|+|++|++|+++..|+++++..
T Consensus 156 ~~p~ililDEpts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l~--~~~~~D~i~vl~~G~Iv~~G~~~ell~ 226 (241)
T d2pmka1 156 NNPKILIFDEATSALDYESEHVIMRNMHKICK--GRTVIIIAHRLS--TVKNADRIIVMEKGKIVEQGKHKELLS 226 (241)
T ss_dssp TCCSEEEECCCCSCCCHHHHHHHHHHHHHHHT--TSEEEEECSSGG--GGTTSSEEEEEETTEEEEEECHHHHHH
T ss_pred CCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHC--CCEEEEEECCHH--HHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 16513556477655598999999999999858--998999978899--998499999998999999889999982
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=354.03 Aligned_cols=214 Identities=27% Similarity=0.467 Sum_probs=176.8
Q ss_pred HCCCCCCCC-CCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCC---HHHCCCEEEEC
Q ss_conf 001232321-34210010479984680999988999888999998965989996189999970890---31103478982
Q 006505 47 KLEEAADSD-GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGYVT 122 (643)
Q Consensus 47 ~~~~~~~~~-~~~~iL~~is~~i~~Ge~~ai~GpsGsGKSTLl~~L~g~~~~~~G~I~~~g~~~~~---~~~r~~~~yV~ 122 (643)
+++++...| +.+.+|+|+|+++++||++||+||||||||||+++|+|+++|++|+|.+||++++. ..+|+.++||+
T Consensus 3 e~knvsf~Y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~ 82 (242)
T d1mv5a_ 3 SARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVS 82 (242)
T ss_dssp EEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEEC
T ss_pred EEEEEEEECCCCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCEEECCCCHHHHHHHEEEEC
T ss_conf 99988998799984142258998599999999999997999999999960989877988998844246788874367975
Q ss_pred CCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC-------CHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 598889999999999999870499989999999999999939-------9012231107976787797898999999998
Q 006505 123 QRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELG-------LEHVAMARVGDDRVRGISGGERRRVSIGFDV 195 (643)
Q Consensus 123 Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~~g~~~~~~lSgGerqRvsia~aL 195 (643)
|++.+|+. |++||+.++... ..+..+ +.+.++..+ +.+..++.++ +.+..||||||||++|||||
T Consensus 83 Q~~~lf~~-ti~eNi~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~-~~g~~LSGGqkQRv~iARal 154 (242)
T d1mv5a_ 83 QDSAIMAG-TIRENLTYGLEG--DYTDED----LWQVLDLAFARSFVENMPDQLNTEVG-ERGVKISGGQRQRLAIARAF 154 (242)
T ss_dssp CSSCCCCE-EHHHHTTSCTTS--CSCHHH----HHHHHHHHTCTTTTTSSTTGGGCEES-TTSBCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCC-CHHHHEECCCCC--CCCHHH----HHHHHHHHHHHHHHCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHH
T ss_conf 66545785-345430124455--542356----77899999755542037421015236-87898799999999999998
Q ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCEEEEECCHHHHHHH
Q ss_conf 40998789819999999999999999999999719989999805885589862687999819828985395679999
Q 006505 196 IHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSVS 272 (643)
Q Consensus 196 ~~~p~illlDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~~~~~~D~i~~l~~G~~~~~G~~~~~~~~ 272 (643)
+.+|+|++|||||++||+.++..+++.|++++ +|+|+|+++|+++ ....||+|++|++|++++.|+++++.+.
T Consensus 155 ~~~p~ililDEpts~LD~~~~~~i~~~l~~l~--~~~Tvi~itH~l~--~~~~~D~i~vl~~G~iv~~G~~~eLl~~ 227 (242)
T d1mv5a_ 155 LRNPKILMLDEATASLDSESESMVQKALDSLM--KGRTTLVIAHRLS--TIVDADKIYFIEKGQITGSGKHNELVAT 227 (242)
T ss_dssp HHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH--TTSEEEEECCSHH--HHHHCSEEEEEETTEECCCSCHHHHHHH
T ss_pred HCCCCEEEECCCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCHH--HHHHCCEEEEEECCEEEEECCHHHHHHC
T ss_conf 52998999658865569889999988788871--7998999978799--9984999999989999999999999868
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=341.90 Aligned_cols=215 Identities=22% Similarity=0.341 Sum_probs=177.8
Q ss_pred HHCCCCCCCCC--CCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCC---HHHCCCEEE
Q ss_conf 10012323213--4210010479984680999988999888999998965989996189999970890---311034789
Q 006505 46 SKLEEAADSDG--VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGY 120 (643)
Q Consensus 46 ~~~~~~~~~~~--~~~iL~~is~~i~~Ge~~ai~GpsGsGKSTLl~~L~g~~~~~~G~I~~~g~~~~~---~~~r~~~~y 120 (643)
++.++++..|. ...+|+|+|+.+++||.+||+||||||||||+++|+|+++|++|+|.+||+++.. ..+|+.++|
T Consensus 14 I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 93 (253)
T d3b60a1 14 LEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVAL 93 (253)
T ss_dssp EEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEE
T ss_pred EEEEEEEEEECCCCCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHEEEE
T ss_conf 99998899929999763533289985999999999999859999999862168884689878801211106654206879
Q ss_pred ECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHH-------HHHHCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 825988899999999999998704999899999999999999399012-------2311079767877978989999999
Q 006505 121 VTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHV-------AMARVGDDRVRGISGGERRRVSIGF 193 (643)
Q Consensus 121 V~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~~g~~~~~~lSgGerqRvsia~ 193 (643)
|+|++.++.. |+++|+.++..- ..+.+ ++.+.++..++.+. .++.+ ++.+..||||||||++|||
T Consensus 94 v~Q~~~l~~~-ti~~n~~~~~~~--~~~~~----~i~~a~~~~~l~~~i~~l~~gl~t~~-~~~~~~LSGGqkQRvaiAR 165 (253)
T d3b60a1 94 VSQNVHLFND-TVANNIAYARTE--EYSRE----QIEEAARMAYAMDFINKMDNGLDTII-GENGVLLSGGQRQRIAIAR 165 (253)
T ss_dssp ECSSCCCCSS-BHHHHHHTTTTS--CCCHH----HHHHHHHTTTCHHHHHHSTTGGGSBC-CTTSCSSCHHHHHHHHHHH
T ss_pred EEECCCCCCC-CHHHHHHHCCCC--CCCHH----HHHHHHHHHHHHHHHHHCCCCCHHHH-CCCCCCCCHHHHHHHHHHH
T ss_conf 9502544786-202433205722--08999----99999999817999973554410143-4888984999999999999
Q ss_pred HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCEEEEECCHHHHHHH
Q ss_conf 9840998789819999999999999999999999719989999805885589862687999819828985395679999
Q 006505 194 DVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSVS 272 (643)
Q Consensus 194 aL~~~p~illlDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~~~~~~D~i~~l~~G~~~~~G~~~~~~~~ 272 (643)
||+.+|++++||||||+||+.++..+++.|+++.+ ++|+|+++|+++ ..+.||+|++|++|++++.|+++++...
T Consensus 166 al~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l~--~~~~~D~v~vl~~G~Iv~~G~~~eLl~~ 240 (253)
T d3b60a1 166 ALLRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHRLS--TIEQADEIVVVEDGIIVERGTHSELLAQ 240 (253)
T ss_dssp HHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT--TSEEEEECSCGG--GTTTCSEEEEEETTEEEEEECHHHHHHH
T ss_pred HHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEECCHH--HHHHCCEEEEEECCEEEEECCHHHHHHC
T ss_conf 99549988995164445898899999999987522--788999988799--9985999999989999998899999868
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=339.60 Aligned_cols=214 Identities=27% Similarity=0.414 Sum_probs=179.4
Q ss_pred HHCCCCCCCCC--CCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCC---CHHHCCCEEE
Q ss_conf 10012323213--421001047998468099998899988899999896598999618999997089---0311034789
Q 006505 46 SKLEEAADSDG--VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPID---KAQFRKVSGY 120 (643)
Q Consensus 46 ~~~~~~~~~~~--~~~iL~~is~~i~~Ge~~ai~GpsGsGKSTLl~~L~g~~~~~~G~I~~~g~~~~---~~~~r~~~~y 120 (643)
++.+++...|. .+++|+|+|+.+++||.+||+||||||||||+++|+|+++|++|+|.++|.++. ...+|+.++|
T Consensus 17 I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~ 96 (255)
T d2hyda1 17 IDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGL 96 (255)
T ss_dssp EEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEE
T ss_pred EEEEEEEEEECCCCCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCHHHHHHEEEE
T ss_conf 99998899959999760644389983998999988999809999999971278630001539987530788886341456
Q ss_pred ECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHH-------HHHHCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 825988899999999999998704999899999999999999399012-------2311079767877978989999999
Q 006505 121 VTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHV-------AMARVGDDRVRGISGGERRRVSIGF 193 (643)
Q Consensus 121 V~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~~g~~~~~~lSgGerqRvsia~ 193 (643)
|+|++.+|+. ||+||+.++.. ..+. +.+.+.++..++.+. .++.+ ++.+..||||||||++|||
T Consensus 97 v~Q~~~lf~~-Ti~eNi~~g~~---~~~~----~~~~~al~~~~l~~~i~~lp~gl~t~i-~~~g~~LSgGq~QRi~iAR 167 (255)
T d2hyda1 97 VQQDNILFSD-TVKENILLGRP---TATD----EEVVEAAKMANAHDFIMNLPQGYDTEV-GERGVKLSGGQKQRLSIAR 167 (255)
T ss_dssp ECSSCCCCSS-BHHHHHGGGCS---SCCH----HHHHHHHHHTTCHHHHHTSTTGGGCBC-CGGGTTSCHHHHHHHHHHH
T ss_pred EECCCCCCCC-CHHHHHHCCCC---CCCH----HHHHHHHHHHCCHHHHHHCCCCCCCHH-CCCCCCCCHHHHHHHHHHH
T ss_conf 5101568998-79999851586---7999----999999999697999973624201033-3888984999999999999
Q ss_pred HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCEEEEECCHHHHHHH
Q ss_conf 9840998789819999999999999999999999719989999805885589862687999819828985395679999
Q 006505 194 DVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSVS 272 (643)
Q Consensus 194 aL~~~p~illlDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~~~~~~D~i~~l~~G~~~~~G~~~~~~~~ 272 (643)
||+.+|++++|||||++||+.++..+++.|+++. +++|+|+++|+++ ....||+|++|++|+++..|+++++...
T Consensus 168 al~~~p~ililDEpts~LD~~t~~~i~~~l~~l~--~~~TvI~itH~~~--~~~~~D~ii~l~~G~iv~~G~~~eLl~~ 242 (255)
T d2hyda1 168 IFLNNPPILILDEATSALDLESESIIQEALDVLS--KDRTTLIVAHRLS--TITHADKIVVIENGHIVETGTHRELIAK 242 (255)
T ss_dssp HHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT--TTSEEEEECSSGG--GTTTCSEEEEEETTEEEEEECHHHHHHT
T ss_pred HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH--CCCEEEEEECCHH--HHHHCCEEEEEECCEEEEECCHHHHHHC
T ss_conf 9855998999837654479779999999999875--3888999968999--9985999999989999998899999868
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=0 Score=322.41 Aligned_cols=194 Identities=26% Similarity=0.360 Sum_probs=160.3
Q ss_pred CCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHCCCEEEECCCCCCCCCCCHH
Q ss_conf 13421001047998468099998899988899999896598999618999997089031103478982598889999999
Q 006505 55 DGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTVE 134 (643)
Q Consensus 55 ~~~~~iL~~is~~i~~Ge~~ai~GpsGsGKSTLl~~L~g~~~~~~G~I~~~g~~~~~~~~r~~~~yV~Q~~~l~~~lTV~ 134 (643)
..++++|+|+|+.+++||++||+||||||||||+++|+|+++|++|+|.++| +++||+|+..+++. ||+
T Consensus 46 ~~g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g----------~i~~v~Q~~~l~~~-tv~ 114 (281)
T d1r0wa_ 46 LVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG----------RVSFCSQFSWIMPG-TIK 114 (281)
T ss_dssp HTTCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS----------CEEEECSSCCCCSE-EHH
T ss_pred CCCCEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC----------EEEEEECCCCCCCC-EEE
T ss_conf 8997677375999859999999989998299999999579747882899999----------99998164302676-032
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHC-------CCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 99999987049998999999999999993-------99012231107976787797898999999998409987898199
Q 006505 135 ETLMFSAKLRLRLPQAQLRARVKSLVKEL-------GLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEP 207 (643)
Q Consensus 135 E~l~f~~~l~~~~~~~~~~~~v~~~l~~l-------gL~~~~~~~~g~~~~~~lSgGerqRvsia~aL~~~p~illlDEP 207 (643)
||+.++... .... ..++++.. .+.+..++.+ ++.+..||||||||++|||||+.+|+|++||||
T Consensus 115 eni~~~~~~----~~~~----~~~~~~~~~~~~~i~~l~~~~~~~~-~~~~~~LSgGqkQRv~lARaL~~~p~illLDEP 185 (281)
T d1r0wa_ 115 ENIIFGVSY----DEYR----YKSVVKACQLQQDITKFAEQDNTVL-GEGGVTLSGGQRARISLARAVYKDADLYLLDSP 185 (281)
T ss_dssp HHHTTTSCC----CHHH----HHHHHHHTTCHHHHTTSTTGGGCEE-CTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESC
T ss_pred CCCCCCCCC----CCHH----HHHHHHHHHHHHHHHHCHHHHHHHH-HHHCCCCCHHHHHHHHHHHHHHHCCCCHHHCCC
T ss_conf 142033345----6057----9999999776999984612332355-554237799999999999999869635133385
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCEEEEECCHHHHHH
Q ss_conf 9999999999999999999971998999980588558986268799981982898539567999
Q 006505 208 TSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 208 TsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~~~~~~D~i~~l~~G~~~~~G~~~~~~~ 271 (643)
|++||+.+...+++.+..... .++|+|+++|+++ ..+.||+|++|++|++++.|+++++..
T Consensus 186 ts~LD~~~~~~i~~~~~~~~~-~~~tvi~itH~~~--~l~~aDrI~vl~~G~i~~~Gt~~eL~~ 246 (281)
T d1r0wa_ 186 FGYLDVFTEEQVFESCVCKLM-ANKTRILVTSKME--HLRKADKILILHQGSSYFYGTFSELQS 246 (281)
T ss_dssp CCSSCHHHHHHHHHHCCCCCT-TTSEEEEECSCHH--HHHTCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECHHH--HHHHCCEEEEEECCEEEEECCHHHHHC
T ss_conf 544898999999999998862-8999999925289--998599999998999999878999960
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=314.41 Aligned_cols=199 Identities=25% Similarity=0.391 Sum_probs=174.1
Q ss_pred CCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCC---HHHCCCEEEECCCCCCCCCCCHH
Q ss_conf 210010479984680999988999888999998965989996189999970890---31103478982598889999999
Q 006505 58 RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGYVTQRDTLFPLLTVE 134 (643)
Q Consensus 58 ~~iL~~is~~i~~Ge~~ai~GpsGsGKSTLl~~L~g~~~~~~G~I~~~g~~~~~---~~~r~~~~yV~Q~~~l~~~lTV~ 134 (643)
...|++||+.+++||+++|+||||||||||+++|+|+. |++|+|.++|+++.. ...+...+|++|+.......++.
T Consensus 12 ~~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 90 (231)
T d1l7vc_ 12 STRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVW 90 (231)
T ss_dssp TTTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBHH
T ss_pred CCEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEECCEECCCCCHHHHHHHCEEEECCCCCCCCCCHH
T ss_conf 71555888899489899999899980999999994887-99559999999998699899986402451213577442098
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHC-------CCCEEEEECC
Q ss_conf 999999870499989999999999999939901223110797678779789899999999840-------9987898199
Q 006505 135 ETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIH-------DPKVLILDEP 207 (643)
Q Consensus 135 E~l~f~~~l~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~g~~~~~~lSgGerqRvsia~aL~~-------~p~illlDEP 207 (643)
+++.+...- +...++++++++.+++.+.. +..+..||||||||++||++|+. +|++++||||
T Consensus 91 ~~~~~~~~~------~~~~~~~~~~~~~~~l~~~~-----~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEP 159 (231)
T d1l7vc_ 91 HYLTLHQHD------KTRTELLNDVAGALALDDKL-----GRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEP 159 (231)
T ss_dssp HHHHHHCSC------TTCHHHHHHHHHHTTCTTTT-----TSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSC
T ss_pred HHHHHCCCH------HHHHHHHHHHHHHCCCHHHH-----CCCHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCC
T ss_conf 876410014------66899999999865987676-----7684456998899999999998517133899889997187
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCEEEEECCHHHHH
Q ss_conf 999999999999999999997199899998058855898626879998198289853956799
Q 006505 208 TSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 208 TsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~~~~~~D~i~~l~~G~~~~~G~~~~~~ 270 (643)
|+|||+.++..+.+.++++++ +|+||++++|+++ ++.+.+|++++|++|++++.|+++++.
T Consensus 160 t~gLD~~~~~~i~~~i~~l~~-~g~tii~vtHdl~-~~~~~~dri~vl~~G~iv~~G~~~ev~ 220 (231)
T d1l7vc_ 160 MNSLDVAQQSALDKILSALCQ-QGLAIVMSSHDLN-HTLRHAHRAWLLKGGKMLASGRREEVL 220 (231)
T ss_dssp STTCCHHHHHHHHHHHHHHHH-TTCEEEECCCCHH-HHHHHCSBCCBEETTEECCCSBHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCHH-HHHHHCCEEEEEECCEEEEECCHHHHH
T ss_conf 777898999999999999986-7999999967799-999979999999799899988999981
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=8.4e-45 Score=293.66 Aligned_cols=194 Identities=18% Similarity=0.315 Sum_probs=162.4
Q ss_pred HHCCCCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHCCCEEEECCCC
Q ss_conf 10012323213421001047998468099998899988899999896598999618999997089031103478982598
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRD 125 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~is~~i~~Ge~~ai~GpsGsGKSTLl~~L~g~~~~~~G~I~~~g~~~~~~~~r~~~~yV~Q~~ 125 (643)
+++++++..++ +++|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.+||+++. ..+..++|++|+.
T Consensus 3 lev~~ls~~y~-~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~--~~~~~i~~~~~~~ 79 (200)
T d1sgwa_ 3 LEIRDLSVGYD-KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT--KVKGKIFFLPEEI 79 (200)
T ss_dssp EEEEEEEEESS-SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG--GGGGGEEEECSSC
T ss_pred EEEEEEEEEEC-CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHH--HHCCCEEEEEECC
T ss_conf 99998999939-92884208898599899999999971999999996620567788999989626--7367089995013
Q ss_pred CCCCCCCHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 8899999999999998704999-899999999999999399012231107976787797898999999998409987898
Q 006505 126 TLFPLLTVEETLMFSAKLRLRL-PQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLIL 204 (643)
Q Consensus 126 ~l~~~lTV~E~l~f~~~l~~~~-~~~~~~~~v~~~l~~lgL~~~~~~~~g~~~~~~lSgGerqRvsia~aL~~~p~illl 204 (643)
.++..+|+.|++.+.+.+.... .+ +.+.+.++.+++.+.. ..+..||||||||++||++|+.+|++++|
T Consensus 80 ~~~~~~t~~~~l~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~------~~~~~LSgG~~qrv~ia~al~~~~~llll 149 (200)
T d1sgwa_ 80 IVPRKISVEDYLKAVASLYGVKVNK----NEIMDALESVEVLDLK------KKLGELSQGTIRRVQLASTLLVNAEIYVL 149 (200)
T ss_dssp CCCTTSBHHHHHHHHHHHTTCCCCH----HHHHHHHHHTTCCCTT------SBGGGSCHHHHHHHHHHHHTTSCCSEEEE
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCCH----HHHHHHHHHCCCCCCC------CCCCCCCCCHHHHHHHHHHHHCCCCEEEE
T ss_conf 5788828999999999754886379----9999999874885630------12686897188889999988649989998
Q ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEEC
Q ss_conf 19999999999999999999999719989999805885589862687999819
Q 006505 205 DEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLAN 257 (643)
Q Consensus 205 DEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~~~~~~D~i~~l~~ 257 (643)
||||+|||+.++..+++.++++.++.+.+|+.+.|+. .+||.+..|.+
T Consensus 150 DEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~l-----~~~D~~~~l~~ 197 (200)
T d1sgwa_ 150 DDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL-----SYCDVNENLHK 197 (200)
T ss_dssp ESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC-----TTSSEEEEGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECHH-----HHCCHHHHEEE
T ss_conf 6862016999999999999999867999999991625-----44161234010
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.66 E-value=2.9e-15 Score=110.07 Aligned_cols=75 Identities=16% Similarity=0.263 Sum_probs=63.2
Q ss_pred CCCCCHHHHHHHHHHHHH----HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEE
Q ss_conf 787797898999999998----4099878981999999999999999999999971998999980588558986268799
Q 006505 178 VRGISGGERRRVSIGFDV----IHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSIL 253 (643)
Q Consensus 178 ~~~lSgGerqRvsia~aL----~~~p~illlDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~~~~~~D~i~ 253 (643)
...+|||||.++++|..+ ..++++++||||+++||+.....+.+.|++++. .+.-+|++||+| .+.+.+|+.+
T Consensus 330 ~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~-~~~Q~I~iTH~~--~~~~~ad~~~ 406 (427)
T d1w1wa_ 330 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN-PDLQFIVISLKN--TMFEKSDALV 406 (427)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB-TTBEEEEECSCH--HHHTTCSEEE
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCCEEEEEECCH--HHHHHCCCEE
T ss_conf 3332230479999999999954799977999688777899999999999999728-998899995878--9997366179
Q ss_pred EE
Q ss_conf 98
Q 006505 254 ML 255 (643)
Q Consensus 254 ~l 255 (643)
..
T Consensus 407 ~V 408 (427)
T d1w1wa_ 407 GV 408 (427)
T ss_dssp EE
T ss_pred EE
T ss_conf 99
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.62 E-value=1.1e-17 Score=125.16 Aligned_cols=157 Identities=13% Similarity=0.156 Sum_probs=104.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHCCCEEEEC--CCCC--CCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 99998899988899999896598999618999997089031103478982--5988--8999999999999987049998
Q 006505 73 ILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVT--QRDT--LFPLLTVEETLMFSAKLRLRLP 148 (643)
Q Consensus 73 ~~ai~GpsGsGKSTLl~~L~g~~~~~~G~I~~~g~~~~~~~~r~~~~yV~--Q~~~--l~~~lTV~E~l~f~~~l~~~~~ 148 (643)
-++|+||||||||||+++++|.+++..|.+...+.+......+ .++.. ..+. .....+..+. .+..
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~------~~~~-- 71 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKR--TGFRIITTEGKKKIFSSKFFTSK------KLVG-- 71 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------C--CEEEEEETTCCEEEEEETTCCCS------SEET--
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH------HHHH--
T ss_conf 8999989993899999999814888864699877132888876--53112336677788754113455------4430--
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999399012231107976787797898999999998409987898199999999999999999999997
Q 006505 149 QAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAE 228 (643)
Q Consensus 149 ~~~~~~~v~~~l~~lgL~~~~~~~~g~~~~~~lSgGerqRvsia~aL~~~p~illlDEPTsgLD~~~~~~i~~~L~~l~~ 228 (643)
..+. +.....+++|+++|.++++++..+|+++++|||... ........+.+.++.+
T Consensus 72 -------------~~~~---------~~~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~--~~~~~~~~~~l~~~l~ 127 (178)
T d1ye8a1 72 -------------SYGV---------NVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKM--ELFSKKFRDLVRQIMH 127 (178)
T ss_dssp -------------TEEE---------CHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTT--GGGCHHHHHHHHHHHT
T ss_pred -------------HHHC---------CCCHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCC--CHHHHHHHHHHHHHHC
T ss_conf -------------2303---------762566532013789999997409974230277731--0045799999998750
Q ss_pred HCCCEEEEEECCCCHHHHHHCCEEEEEECCEEEEECC
Q ss_conf 1998999980588558986268799981982898539
Q 006505 229 TRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGT 265 (643)
Q Consensus 229 ~~g~tii~~~H~~~~~~~~~~D~i~~l~~G~~~~~G~ 265 (643)
..+.++++++|+.. ....+|++..+.+|+++.-++
T Consensus 128 ~~~~~il~~~h~~~--~~~~~~~i~~~~~~~i~~v~~ 162 (178)
T d1ye8a1 128 DPNVNVVATIPIRD--VHPLVKEIRRLPGAVLIELTP 162 (178)
T ss_dssp CTTSEEEEECCSSC--CSHHHHHHHTCTTCEEEECCT
T ss_pred CCCCEEEEEECCHH--HHHHHCEEEEEECCEEEEECC
T ss_conf 57978999974477--898636599871999999899
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.41 E-value=4.3e-12 Score=90.36 Aligned_cols=79 Identities=24% Similarity=0.327 Sum_probs=65.5
Q ss_pred CCCCCCHHHHHHHHHHHHH----HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEE
Q ss_conf 6787797898999999998----409987898199999999999999999999997199899998058855898626879
Q 006505 177 RVRGISGGERRRVSIGFDV----IHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSI 252 (643)
Q Consensus 177 ~~~~lSgGerqRvsia~aL----~~~p~illlDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~~~~~~D~i 252 (643)
....+|+|||+...++..+ ...|+++++|||-++|++.....+.+.|+..++ +.-+|++||.|. +.+.+|++
T Consensus 216 ~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~--~~QviitTHsp~--~~~~~d~~ 291 (308)
T d1e69a_ 216 KLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK--HTQFIVITHNKI--VMEAADLL 291 (308)
T ss_dssp BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT--TSEEEEECCCTT--GGGGCSEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEECCHH--HHHHCCCE
T ss_conf 01102577766777776655654226744554320335797899999999998554--887999989889--99732428
Q ss_pred EE--EECCE
Q ss_conf 99--81982
Q 006505 253 LM--LANGS 259 (643)
Q Consensus 253 ~~--l~~G~ 259 (643)
+. +.+|.
T Consensus 292 ~~v~~~~g~ 300 (308)
T d1e69a_ 292 HGVTMVNGV 300 (308)
T ss_dssp EEEEESSSC
T ss_pred EEEEEECCE
T ss_conf 999996999
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.38 E-value=5.5e-07 Score=58.60 Aligned_cols=135 Identities=15% Similarity=0.130 Sum_probs=73.5
Q ss_pred CEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCC-CCCCEEEECCCCCCCHHHCCCEEEECCCCCCCCCCCHHHHH
Q ss_conf 10010479984680999988999888999998965989-99618999997089031103478982598889999999999
Q 006505 59 RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLT-PQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTVEETL 137 (643)
Q Consensus 59 ~iL~~is~~i~~Ge~~ai~GpsGsGKSTLl~~L~g~~~-~~~G~I~~~g~~~~~~~~r~~~~yV~Q~~~l~~~lTV~E~l 137 (643)
.+=+|+++. +.+.++.|.|||.+||||+||.++=..- ...| -.+..+ .+-++--|.++..+...|++
T Consensus 30 ~VpNdi~l~-~~~~~~iiTGpN~~GKSt~lk~i~l~~~laq~G------~~VpA~-----~a~~~~~d~I~~~~~~~d~~ 97 (234)
T d1wb9a2 30 FIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIG------SYVPAQ-----KVEIGPIDRIFTRVGAADDL 97 (234)
T ss_dssp CCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTT------CCBSSS-----EEEECCCCEEEEEEC-----
T ss_pred CCCEEEEEC-CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCC------CEEECC-----CEECCCCHHHEEEECCCCCC
T ss_conf 264057988-995399995467313689999879999998729------767417-----66613442023487467534
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHH
Q ss_conf 99987049998999999999999993990122311079767877978989999999984099878981999999999999
Q 006505 138 MFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSAL 217 (643)
Q Consensus 138 ~f~~~l~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~g~~~~~~lSgGerqRvsia~aL~~~p~illlDEPTsgLD~~~~~ 217 (643)
.-+. +-=..|-+|++-...-..+..++++||+.+|=++....
T Consensus 98 ~~~~--------------------------------------S~F~~E~~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ 139 (234)
T d1wb9a2 98 ASGR--------------------------------------STFMVEMTETANILHNATEYSLVLMDEIGRGTSTYDGL 139 (234)
T ss_dssp --------------------------------------------CHHHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHH
T ss_pred CCCH--------------------------------------HHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHH
T ss_conf 3653--------------------------------------18999999999999745466088532223587745666
Q ss_pred HHHH-HHHHHHHHCCCEEEEEECCCCH
Q ss_conf 9999-9999997199899998058855
Q 006505 218 QIID-MLKVMAETRGRTVILSIHQPGF 243 (643)
Q Consensus 218 ~i~~-~L~~l~~~~g~tii~~~H~~~~ 243 (643)
.+.. .++.+..+.+..+++++|....
T Consensus 140 ~l~~a~l~~l~~~~~~~~i~tTH~~~l 166 (234)
T d1wb9a2 140 SLAWACAENLANKIKALTLFATHYFEL 166 (234)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECSCGGG
T ss_pred HHHHHHHHHHHCCCCCEEEEECCHHHH
T ss_conf 789876454320454428985246877
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.34 E-value=1.9e-06 Score=55.20 Aligned_cols=63 Identities=16% Similarity=0.220 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHHHCCCEEEEEECCCCHHHHHHC
Q ss_conf 8989999999984099878981999999999999999-99999997199899998058855898626
Q 006505 184 GERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQII-DMLKVMAETRGRTVILSIHQPGFRIVKMF 249 (643)
Q Consensus 184 GerqRvsia~aL~~~p~illlDEPTsgLD~~~~~~i~-~~L~~l~~~~g~tii~~~H~~~~~~~~~~ 249 (643)
.|-+|++-....+.+..++++||+.+|=|+.....+. ..++.+.+. +..++++||.. ++..+.
T Consensus 100 ~el~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~-~~~~i~tTH~~--eL~~l~ 163 (224)
T d1ewqa2 100 VEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHER-RAYTLFATHYF--ELTALG 163 (224)
T ss_dssp HHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHH-TCEEEEECCCH--HHHTCC
T ss_pred HHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHHC-CCCEEEEEECH--HHHHHH
T ss_conf 86788987750289772785545456862332002588888888623-76137865202--333221
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=98.25 E-value=5.1e-05 Score=46.38 Aligned_cols=159 Identities=21% Similarity=0.164 Sum_probs=75.6
Q ss_pred CEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHCCCEEEECCCCCCCCCCCHHHHHH
Q ss_conf 10010479984680999988999888999998965989996189999970890311034789825988899999999999
Q 006505 59 RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTVEETLM 138 (643)
Q Consensus 59 ~iL~~is~~i~~Ge~~ai~GpsGsGKSTLl~~L~g~~~~~~G~I~~~g~~~~~~~~r~~~~yV~Q~~~l~~~lTV~E~l~ 138 (643)
+-|+++.+=+.+|+++.|.|++|+|||||+.-++-......| ..+.|+.- .++..+...
T Consensus 23 ~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g---------------~~v~~~s~------E~~~~~~~~ 81 (277)
T d1cr2a_ 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMG---------------KKVGLAML------EESVEETAE 81 (277)
T ss_dssp TTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSC---------------CCEEEEES------SSCHHHHHH
T ss_pred HHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCC---------------CCEEEEEE------CCCHHHHHH
T ss_conf 668887469789808999947999799999999972655336---------------63457640------111135776
Q ss_pred HHHHH--CCCC--CHHH-----HHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC-
Q ss_conf 99870--4999--8999-----999999999993990122311079767877978989999999984099878981999-
Q 006505 139 FSAKL--RLRL--PQAQ-----LRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPT- 208 (643)
Q Consensus 139 f~~~l--~~~~--~~~~-----~~~~v~~~l~~lgL~~~~~~~~g~~~~~~lSgGerqRvsia~aL~~~p~illlDEPT- 208 (643)
-.... ..+. .... ..++.++..+.+.-...... ..........+.....-...--.+|+++++|--+
T Consensus 82 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~vvID~l~~ 158 (277)
T d1cr2a_ 82 DLIGLHNRVRLRQSDSLKREIIENGKFDQWFDELFGNDTFHL---YDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISI 158 (277)
T ss_dssp HHHHHHTTCCGGGCHHHHHHHHHTSHHHHHHHHHHSSSCEEE---ECCC-CCCHHHHHHHHHHHHHTTCCSEEEEEEEEC
T ss_pred HHHHHHHCCCCHHHCCCCCCHHHHHHHHHHHHHHHCCCEEEE---ECCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCC
T ss_conf 999986458710101222221456778889887403521466---21433106899999865432136762599705421
Q ss_pred ----CCC--CHHHHHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf ----999--999999999999999971998999980588
Q 006505 209 ----SGL--DSTSALQIIDMLKVMAETRGRTVILSIHQP 241 (643)
Q Consensus 209 ----sgL--D~~~~~~i~~~L~~l~~~~g~tii~~~H~~ 241 (643)
.+- +......++..|++++++.+.+|++++|--
T Consensus 159 l~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~vi~~~q~~ 197 (277)
T d1cr2a_ 159 VVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLK 197 (277)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCC
T ss_conf 203465443067789999999997650165520310356
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=97.87 E-value=0.00019 Score=42.86 Aligned_cols=156 Identities=19% Similarity=0.209 Sum_probs=76.6
Q ss_pred CCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHCCCEEEECCCCCCCCCCCHHHHH
Q ss_conf 21001047998468099998899988899999896598999618999997089031103478982598889999999999
Q 006505 58 RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTVEETL 137 (643)
Q Consensus 58 ~~iL~~is~~i~~Ge~~ai~GpsGsGKSTLl~~L~g~~~~~~G~I~~~g~~~~~~~~r~~~~yV~Q~~~l~~~lTV~E~l 137 (643)
.-++.+ +.||+++.|.|++|+|||||+-.++.... .|.-.+.+... -...+-|+.-++. .. .+.+-+
T Consensus 20 d~li~G----~~pg~~~~i~G~~G~GKS~l~l~la~~ia--~g~~~~~~~~~----~~~~vl~~~~E~~--~~-~~~~Rl 86 (274)
T d1nlfa_ 20 DYVLPN----MVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDLLEVGEL----PTGPVIYLPAEDP--PT-AIHHRL 86 (274)
T ss_dssp CEEETT----EETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCTTCCCCC----CCCCEEEEESSSC--HH-HHHHHH
T ss_pred HHHHCC----CCCCCEEEEEECCCCCHHHHHHHHHHHHH--CCCCCCCCCCC----CCCCEEEEECCCH--HH-HHHHHH
T ss_conf 898689----55895899992899989999999999997--69972111235----7873689851234--99-999999
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-----CCC
Q ss_conf 999870499989999999999999939901223110797678779789899999999840998789819999-----999
Q 006505 138 MFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTS-----GLD 212 (643)
Q Consensus 138 ~f~~~l~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~g~~~~~~lSgGerqRvsia~aL~~~p~illlDEPTs-----gLD 212 (643)
. .+....+..... .....+.+.... ......-....+.-...-..+|+++++|--+. --|
T Consensus 87 ~---~~~~~~~~~~~~----~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~lvviD~l~~~~~~~~~~ 151 (274)
T d1nlfa_ 87 H---ALGAHLSAEERQ----AVADGLLIQPLI--------GSLPNIMAPEWFDGLKRAAEGRRLMVLDTLRRFHIEEENA 151 (274)
T ss_dssp H---HHHTTSCHHHHH----HHHHHEEECCCT--------TSCCCTTSHHHHHHHHHHHTTCSEEEEECGGGGCCSCTTC
T ss_pred H---HHHHCCCHHHHH----CCCCCCEECCCC--------CCCCHHHHHHHHHHHHHHCCCCCEEECCCHHHHCCCCCCC
T ss_conf 9---986236866653----123332321456--------7420357899999988752676589628135422665232
Q ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 99999999999999971998999980588
Q 006505 213 STSALQIIDMLKVMAETRGRTVILSIHQP 241 (643)
Q Consensus 213 ~~~~~~i~~~L~~l~~~~g~tii~~~H~~ 241 (643)
.....+++..|+.+++..+.+++++.|..
T Consensus 152 ~~~~~~~~~~l~~la~~~~~~vi~v~H~~ 180 (274)
T d1nlfa_ 152 SGPMAQVIGRMEAIAADTGCSIVFLHHAS 180 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHCCEEEEEEEC-
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEHHHHCC
T ss_conf 25689999887777644797540131005
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=97.67 E-value=0.00064 Score=39.54 Aligned_cols=154 Identities=12% Similarity=0.093 Sum_probs=82.2
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 79984680999988999888999998965989996189999970890311034789825988899999999999998704
Q 006505 65 SCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLR 144 (643)
Q Consensus 65 s~~i~~Ge~~ai~GpsGsGKSTLl~~L~g~~~~~~G~I~~~g~~~~~~~~r~~~~yV~Q~~~l~~~lTV~E~l~f~~~l~ 144 (643)
.+=+++|.++.|.||+|+|||||..-++....-.. ..+.|+.-+ .+..+........
T Consensus 20 ~GGi~~gsl~li~G~pGsGKT~l~~qia~~~~~~~----------------~~~~~is~e------~~~~~~~~~~~~~- 76 (242)
T d1tf7a2 20 GGGFFKDSIILATGATGTGKTLLVSRFVENACANK----------------ERAILFAYE------ESRAQLLRNAYSW- 76 (242)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTT----------------CCEEEEESS------SCHHHHHHHHHTT-
T ss_pred CCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHC----------------CCCCEEECC------CCHHHHHHHHHHC-
T ss_conf 68986984999991899999999999999998723----------------244112126------7999999999982-
Q ss_pred CCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHH-HHCCCCEEEEECCCC---CCCHHHHHHHH
Q ss_conf 99989999999999999939901223110797678779789899999999-840998789819999---99999999999
Q 006505 145 LRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFD-VIHDPKVLILDEPTS---GLDSTSALQII 220 (643)
Q Consensus 145 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~~g~~~~~~lSgGerqRvsia~a-L~~~p~illlDEPTs---gLD~~~~~~i~ 220 (643)
+....+ + ...+..... +.........+.- -.+..+ --.+|++++.|--+. +.+.......+
T Consensus 77 -~~~~~~-------~-~~~~~~~~~-----~~~~~~~~~~~~~-~~i~~~i~~~~~~~vviDs~~~~~~~~~~~~~~~~~ 141 (242)
T d1tf7a2 77 -GMDFEE-------M-ERQNLLKIV-----CAYPESAGLEDHL-QIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFV 141 (242)
T ss_dssp -SCCHHH-------H-HHTTSEEEC-----CCCGGGSCHHHHH-HHHHHHHHTTCCSEEEEECHHHHTSSSCHHHHHHHH
T ss_pred -CCCHHH-------H-HHCCCEEEE-----EEECCHHHHHHHH-HHHHHHHHHCCCCEEEEECCHHHHCCCCHHHHHHHH
T ss_conf -998699-------8-545861799-----7300010179999-999999984088533220431430489999999999
Q ss_pred HHHHHHHHHCCCEEEEEECCCC---------HHHHHHCCEEEEEE
Q ss_conf 9999999719989999805885---------58986268799981
Q 006505 221 DMLKVMAETRGRTVILSIHQPG---------FRIVKMFNSILMLA 256 (643)
Q Consensus 221 ~~L~~l~~~~g~tii~~~H~~~---------~~~~~~~D~i~~l~ 256 (643)
..|.+++++.+.+++++.|... ..+...+|.++.+.
T Consensus 142 ~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~ 186 (242)
T d1tf7a2 142 IGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQ 186 (242)
T ss_dssp HHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEE
T ss_pred HHHHHHHHHCCCEEEEEEEEEEECCCCCCCCCCEEEECCEEEEEE
T ss_conf 999999998698399998567512554457764046421699999
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.58 E-value=2.9e-05 Score=47.87 Aligned_cols=35 Identities=31% Similarity=0.337 Sum_probs=30.3
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 68099998899988899999896598999618999
Q 006505 70 PWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFV 104 (643)
Q Consensus 70 ~Ge~~ai~GpsGsGKSTLl~~L~g~~~~~~G~I~~ 104 (643)
+|+.++++|+||+|||||+|.|.+...-..|+|.-
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~ 128 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSE 128 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHCCCCCC
T ss_conf 69808997889877888877305355501068420
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.41 E-value=3.9e-05 Score=47.05 Aligned_cols=26 Identities=27% Similarity=0.575 Sum_probs=23.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 80999988999888999998965989
Q 006505 71 WEILAIVGPSGAGKSSLLEILAGKLT 96 (643)
Q Consensus 71 Ge~~ai~GpsGsGKSTLl~~L~g~~~ 96 (643)
|.++.|+|||||||||+.+.|....+
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 74999989999999999999984589
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.26 E-value=0.00011 Score=44.35 Aligned_cols=36 Identities=28% Similarity=0.338 Sum_probs=27.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCC
Q ss_conf 68099998899988899999896598999618999997
Q 006505 70 PWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGS 107 (643)
Q Consensus 70 ~Ge~~ai~GpsGsGKSTLl~~L~g~~~~~~G~I~~~g~ 107 (643)
.|+++.|.||+||||||+.+.|+.... .--+.+++.
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg--~~~~~~~~d 38 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPG--VPKVHFHSD 38 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSS--SCEEEECTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHC--CCEEEECHH
T ss_conf 985999988999988999999999959--997990689
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=97.18 E-value=3.1e-05 Score=47.67 Aligned_cols=36 Identities=28% Similarity=0.338 Sum_probs=30.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 680999988999888999998965989996189999
Q 006505 70 PWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVN 105 (643)
Q Consensus 70 ~Ge~~ai~GpsGsGKSTLl~~L~g~~~~~~G~I~~~ 105 (643)
+|+.++++|+||+|||||+|.|.+...-..|+|.-.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~ 131 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEH 131 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHHCCCCCC
T ss_conf 356499987787348789875151767640355533
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=97.17 E-value=0.00014 Score=43.57 Aligned_cols=27 Identities=37% Similarity=0.511 Sum_probs=24.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 680999988999888999998965989
Q 006505 70 PWEILAIVGPSGAGKSSLLEILAGKLT 96 (643)
Q Consensus 70 ~Ge~~ai~GpsGsGKSTLl~~L~g~~~ 96 (643)
.|.++.|+||||+|||||.+.|....+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 980999999999999999999986398
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.15 E-value=0.00014 Score=43.69 Aligned_cols=24 Identities=42% Similarity=0.553 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999988999888999998965989
Q 006505 73 ILAIVGPSGAGKSSLLEILAGKLT 96 (643)
Q Consensus 73 ~~ai~GpsGsGKSTLl~~L~g~~~ 96 (643)
+++|+|++|||||||++.|...+.
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~ 27 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALC 27 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899991899989999999999999
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=97.05 E-value=0.00021 Score=42.57 Aligned_cols=27 Identities=33% Similarity=0.522 Sum_probs=24.3
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 468099998899988899999896598
Q 006505 69 KPWEILAIVGPSGAGKSSLLEILAGKL 95 (643)
Q Consensus 69 ~~Ge~~ai~GpsGsGKSTLl~~L~g~~ 95 (643)
+.+.++.|+||+||||||+.+.|+..+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 987189998999989899999999986
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.99 E-value=0.00025 Score=42.06 Aligned_cols=28 Identities=18% Similarity=0.192 Sum_probs=24.8
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4680999988999888999998965989
Q 006505 69 KPWEILAIVGPSGAGKSSLLEILAGKLT 96 (643)
Q Consensus 69 ~~Ge~~ai~GpsGsGKSTLl~~L~g~~~ 96 (643)
++|.++.|+|++||||||+-+.|+..+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9976999889999999999999999986
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.99 E-value=0.0083 Score=32.59 Aligned_cols=160 Identities=14% Similarity=0.039 Sum_probs=74.1
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHC-CCCCCCCEEEECCCCCCCHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 79984680999988999888999998965-98999618999997089031103478982598889999999999999870
Q 006505 65 SCKAKPWEILAIVGPSGAGKSSLLEILAG-KLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKL 143 (643)
Q Consensus 65 s~~i~~Ge~~ai~GpsGsGKSTLl~~L~g-~~~~~~G~I~~~g~~~~~~~~r~~~~yV~Q~~~l~~~lTV~E~l~f~~~l 143 (643)
++=+++|+++.|.|++|+|||+|.--++. ....... .+.|+.-+ .+..+........
T Consensus 20 ~GGi~~G~~~~I~G~~G~GKT~la~~~~~~~~~~~~~----------------~~~~~s~e------~~~~~~~~~~~~~ 77 (242)
T d1tf7a1 20 HGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDE----------------PGVFVTFE------ETPQDIIKNARSF 77 (242)
T ss_dssp TSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCC----------------CEEEEESS------SCHHHHHHHHGGG
T ss_pred CCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCC----------------CCCCCCCC------CCHHHHHHHHHHC
T ss_conf 6899698399999479999999999999999985688----------------74201266------7999999999984
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHH-HHHHHHHHH--CCCCEEEEECCCCCC----CHHHH
Q ss_conf 49998999999999999993990122311079767877978989-999999984--099878981999999----99999
Q 006505 144 RLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERR-RVSIGFDVI--HDPKVLILDEPTSGL----DSTSA 216 (643)
Q Consensus 144 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~g~~~~~~lSgGerq-Rvsia~aL~--~~p~illlDEPTsgL----D~~~~ 216 (643)
. .... ................ .......+..... -+.-....+ .+|++++.|--+.-. +....
T Consensus 78 ~--~~~~-------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~viiD~~~~l~~~~~~~~~~ 147 (242)
T d1tf7a1 78 G--WDLA-------KLVDEGKLFILDASPD-PEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVV 147 (242)
T ss_dssp T--CCHH-------HHHHTTSEEEEECCCC-SSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHH
T ss_pred C--CCHH-------HHHHHCCHHHHHHCCC-HHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHH
T ss_conf 9--9848-------9887143024442103-3544443024589999999999886312220020788998760572678
Q ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCH--------HHHHHCCEEEEEE
Q ss_conf 999999999997199899998058855--------8986268799981
Q 006505 217 LQIIDMLKVMAETRGRTVILSIHQPGF--------RIVKMFNSILMLA 256 (643)
Q Consensus 217 ~~i~~~L~~l~~~~g~tii~~~H~~~~--------~~~~~~D~i~~l~ 256 (643)
...+..+.+.+++.+.+++++.|.... .....+|.++.+.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 195 (242)
T d1tf7a1 148 RRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILR 195 (242)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEE
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEECCEEEEEE
T ss_conf 999999999998639716884210255422246762335362999988
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=96.93 E-value=1.3e-05 Score=50.00 Aligned_cols=35 Identities=20% Similarity=0.286 Sum_probs=28.9
Q ss_pred EEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 001047998468099998899988899999896598
Q 006505 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKL 95 (643)
Q Consensus 60 iL~~is~~i~~Ge~~ai~GpsGsGKSTLl~~L~g~~ 95 (643)
-.++.++.+.+| ++.|+|||||||||++++|.-.+
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L 48 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTAL 48 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred CEEEEEEECCCC-EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 870279974998-08998899998799999999996
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.92 E-value=0.00015 Score=43.47 Aligned_cols=26 Identities=23% Similarity=0.404 Sum_probs=22.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 09999889998889999989659899
Q 006505 72 EILAIVGPSGAGKSSLLEILAGKLTP 97 (643)
Q Consensus 72 e~~ai~GpsGsGKSTLl~~L~g~~~~ 97 (643)
++++|+|++|||||||++.|...+..
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~ 27 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVR 27 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 09999809999899999999999986
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=96.91 E-value=0.0039 Score=34.66 Aligned_cols=44 Identities=18% Similarity=0.252 Sum_probs=32.7
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCC-CCCCCCEEEECCCCC
Q ss_conf 99846809999889998889999989659-899961899999708
Q 006505 66 CKAKPWEILAIVGPSGAGKSSLLEILAGK-LTPQSGSTFVNGSPI 109 (643)
Q Consensus 66 ~~i~~Ge~~ai~GpsGsGKSTLl~~L~g~-~~~~~G~I~~~g~~~ 109 (643)
+=+++|.++.|.||+|+|||||.-.++.- ..++.--++++....
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~~ 93 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 93 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 996673589980577747899999999998708987999865445
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.86 E-value=0.0004 Score=40.80 Aligned_cols=28 Identities=32% Similarity=0.492 Sum_probs=24.4
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4680999988999888999998965989
Q 006505 69 KPWEILAIVGPSGAGKSSLLEILAGKLT 96 (643)
Q Consensus 69 ~~Ge~~ai~GpsGsGKSTLl~~L~g~~~ 96 (643)
++|-.+.|.||+||||||+.+.|+..+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 9988899982899988999999999858
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.81 E-value=0.00037 Score=41.02 Aligned_cols=27 Identities=30% Similarity=0.433 Sum_probs=23.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 680999988999888999998965989
Q 006505 70 PWEILAIVGPSGAGKSSLLEILAGKLT 96 (643)
Q Consensus 70 ~Ge~~ai~GpsGsGKSTLl~~L~g~~~ 96 (643)
..+++.|.||+||||||+.+.|+..+.
T Consensus 2 ~~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 2 TTRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 985999989999998999999999728
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=96.78 E-value=0.00047 Score=40.33 Aligned_cols=23 Identities=35% Similarity=0.598 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998899988899999896598
Q 006505 73 ILAIVGPSGAGKSSLLEILAGKL 95 (643)
Q Consensus 73 ~~ai~GpsGsGKSTLl~~L~g~~ 95 (643)
+++|+||.|||||||++.|....
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~ 24 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYL 24 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89999189983999999999988
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.76 E-value=0.00039 Score=40.84 Aligned_cols=25 Identities=36% Similarity=0.542 Sum_probs=22.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 0999988999888999998965989
Q 006505 72 EILAIVGPSGAGKSSLLEILAGKLT 96 (643)
Q Consensus 72 e~~ai~GpsGsGKSTLl~~L~g~~~ 96 (643)
..++|.||+|+|||||.+.|+..+.
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~~ 32 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVFN 32 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 2899989999989999999999849
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.75 E-value=0.00043 Score=40.60 Aligned_cols=24 Identities=38% Similarity=0.527 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999988999888999998965989
Q 006505 73 ILAIVGPSGAGKSSLLEILAGKLT 96 (643)
Q Consensus 73 ~~ai~GpsGsGKSTLl~~L~g~~~ 96 (643)
++||-||+|||||||.+.|+..+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999789887899999999999836
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.73 E-value=0.00012 Score=44.15 Aligned_cols=36 Identities=19% Similarity=0.242 Sum_probs=27.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCC
Q ss_conf 099998899988899999896598999618999997
Q 006505 72 EILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGS 107 (643)
Q Consensus 72 e~~ai~GpsGsGKSTLl~~L~g~~~~~~G~I~~~g~ 107 (643)
+.+.|.||+|+|||||++.++..+....+.+.+.+.
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~~ 37 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYT 37 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEEC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 699998899971999999999999977997999984
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.72 E-value=0.00043 Score=40.60 Aligned_cols=36 Identities=11% Similarity=0.222 Sum_probs=28.3
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 468099998899988899999896598999618999
Q 006505 69 KPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFV 104 (643)
Q Consensus 69 ~~Ge~~ai~GpsGsGKSTLl~~L~g~~~~~~G~I~~ 104 (643)
+.+.-+.|.||.||||||++++|.+..++..--|.+
T Consensus 164 ~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivti 199 (323)
T d1g6oa_ 164 AIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI 199 (323)
T ss_dssp HHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred HHCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEEC
T ss_conf 837888999403566257899986530145623311
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.65 E-value=0.00034 Score=41.19 Aligned_cols=27 Identities=15% Similarity=0.369 Sum_probs=23.0
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 809999889998889999989659899
Q 006505 71 WEILAIVGPSGAGKSSLLEILAGKLTP 97 (643)
Q Consensus 71 Ge~~ai~GpsGsGKSTLl~~L~g~~~~ 97 (643)
..+++|.|++||||||+.+.|+..+..
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~ 27 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMDNLRK 27 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 988999899998989999999999987
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.65 E-value=0.00052 Score=40.06 Aligned_cols=32 Identities=38% Similarity=0.729 Sum_probs=24.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 09999889998889999989659899961899999
Q 006505 72 EILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNG 106 (643)
Q Consensus 72 e~~ai~GpsGsGKSTLl~~L~g~~~~~~G~I~~~g 106 (643)
.++.|.||+||||||+.+.|+..+. +.+.++|
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~---~~~~~~~ 34 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD---NSAYIEG 34 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS---SEEEEEH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC---CCEEEEH
T ss_conf 0899989999998999999999809---9889830
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.62 E-value=0.00075 Score=39.07 Aligned_cols=25 Identities=24% Similarity=0.460 Sum_probs=21.4
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8099998899988899999896598
Q 006505 71 WEILAIVGPSGAGKSSLLEILAGKL 95 (643)
Q Consensus 71 Ge~~ai~GpsGsGKSTLl~~L~g~~ 95 (643)
...+.|+||||+||+||++.|....
T Consensus 3 ~k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 3 RKTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHC
T ss_conf 7719999989999999999999709
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.61 E-value=0.0007 Score=39.28 Aligned_cols=46 Identities=17% Similarity=0.195 Sum_probs=31.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHCCCEEEECCCCCCCC
Q ss_conf 999988999888999998965989996189999970890311034789825988899
Q 006505 73 ILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLFP 129 (643)
Q Consensus 73 ~~ai~GpsGsGKSTLl~~L~g~~~~~~G~I~~~g~~~~~~~~r~~~~yV~Q~~~l~~ 129 (643)
++||.||+||||||+-+.|+..+.. ... ......+..+.+|+.+.+
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~---------~~~--~~~~~~~~vi~~D~yy~~ 49 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQ---------NEV--DYRQKQVVILSQDSFYRV 49 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTG---------GGS--CGGGCSEEEEEGGGGBCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCH---------HCC--CCCCCCEEEEECCCCCCC
T ss_conf 9999899978799999999999641---------013--457884399934653224
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.61 E-value=0.00077 Score=39.03 Aligned_cols=33 Identities=27% Similarity=0.382 Sum_probs=23.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCC
Q ss_conf 099998899988899999896598999618999997
Q 006505 72 EILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGS 107 (643)
Q Consensus 72 e~~ai~GpsGsGKSTLl~~L~g~~~~~~G~I~~~g~ 107 (643)
+++.|.||+||||||+.+.|.... .|...++..
T Consensus 3 klIii~G~pGsGKTTla~~L~~~~---~~~~~~~~d 35 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAKN---PGFYNINRD 35 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS---TTEEEECHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC---CCCEEECHH
T ss_conf 799998999999999999999957---997996039
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.59 E-value=0.00069 Score=39.33 Aligned_cols=24 Identities=46% Similarity=0.708 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999988999888999998965989
Q 006505 73 ILAIVGPSGAGKSSLLEILAGKLT 96 (643)
Q Consensus 73 ~~ai~GpsGsGKSTLl~~L~g~~~ 96 (643)
.+.|+||||||||||.+.|+...+
T Consensus 3 pIvl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 699989999998999999997488
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.55 E-value=0.00063 Score=39.56 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999988999888999998965989
Q 006505 73 ILAIVGPSGAGKSSLLEILAGKLT 96 (643)
Q Consensus 73 ~~ai~GpsGsGKSTLl~~L~g~~~ 96 (643)
.++|+|++|+|||||++.|.|...
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~~ 48 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRKN 48 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC--
T ss_pred EEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 999989999879999998529874
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=96.54 E-value=0.00075 Score=39.10 Aligned_cols=23 Identities=35% Similarity=0.497 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998899988899999896598
Q 006505 73 ILAIVGPSGAGKSSLLEILAGKL 95 (643)
Q Consensus 73 ~~ai~GpsGsGKSTLl~~L~g~~ 95 (643)
.+.|+||+||||||+.+.|+..+
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 79898999999899999999997
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=96.51 E-value=0.00088 Score=38.67 Aligned_cols=26 Identities=15% Similarity=0.336 Sum_probs=22.5
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 68099998899988899999896598
Q 006505 70 PWEILAIVGPSGAGKSSLLEILAGKL 95 (643)
Q Consensus 70 ~Ge~~ai~GpsGsGKSTLl~~L~g~~ 95 (643)
+..++.|+||+||||||+.+.|+..+
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99489998999998899999999997
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.50 E-value=0.00047 Score=40.38 Aligned_cols=27 Identities=30% Similarity=0.283 Sum_probs=23.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 680999988999888999998965989
Q 006505 70 PWEILAIVGPSGAGKSSLLEILAGKLT 96 (643)
Q Consensus 70 ~Ge~~ai~GpsGsGKSTLl~~L~g~~~ 96 (643)
.|.++.|.|++||||||+-+.|+..+.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 996999889999999999999999997
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.49 E-value=0.0013 Score=37.71 Aligned_cols=30 Identities=20% Similarity=0.181 Sum_probs=26.4
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 998468099998899988899999896598
Q 006505 66 CKAKPWEILAIVGPSGAGKSSLLEILAGKL 95 (643)
Q Consensus 66 ~~i~~Ge~~ai~GpsGsGKSTLl~~L~g~~ 95 (643)
+-+++|+++.|.||+|+|||||..-++...
T Consensus 18 GGi~~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 18 GGIETGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 898599799999589999999999999999
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.49 E-value=0.00087 Score=38.70 Aligned_cols=23 Identities=48% Similarity=0.683 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998899988899999896598
Q 006505 73 ILAIVGPSGAGKSSLLEILAGKL 95 (643)
Q Consensus 73 ~~ai~GpsGsGKSTLl~~L~g~~ 95 (643)
.+.|+||||||||||.+.|....
T Consensus 2 pIvl~GPsGsGK~tl~~~L~~~~ 24 (190)
T d1lvga_ 2 PVVLSGPSGAGKSTLLKKLFQEH 24 (190)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHC
T ss_conf 19999999999999999999748
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.48 E-value=0.0016 Score=37.07 Aligned_cols=23 Identities=39% Similarity=0.553 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998899988899999896598
Q 006505 73 ILAIVGPSGAGKSSLLEILAGKL 95 (643)
Q Consensus 73 ~~ai~GpsGsGKSTLl~~L~g~~ 95 (643)
-++|+|++|+|||||++.|.|..
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999997787
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.38 E-value=0.0012 Score=37.74 Aligned_cols=26 Identities=27% Similarity=0.436 Sum_probs=22.9
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 68099998899988899999896598
Q 006505 70 PWEILAIVGPSGAGKSSLLEILAGKL 95 (643)
Q Consensus 70 ~Ge~~ai~GpsGsGKSTLl~~L~g~~ 95 (643)
+-.++.|+||+||||||+.+.|+..+
T Consensus 7 ~~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 7 QVSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 97289998999999899999999985
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=96.27 E-value=0.0014 Score=37.49 Aligned_cols=23 Identities=48% Similarity=0.681 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998899988899999896598
Q 006505 73 ILAIVGPSGAGKSSLLEILAGKL 95 (643)
Q Consensus 73 ~~ai~GpsGsGKSTLl~~L~g~~ 95 (643)
.+.|+||+||||||+-+.|+..+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 49998999999999999999996
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=96.26 E-value=0.0015 Score=37.16 Aligned_cols=24 Identities=38% Similarity=0.639 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999988999888999998965989
Q 006505 73 ILAIVGPSGAGKSSLLEILAGKLT 96 (643)
Q Consensus 73 ~~ai~GpsGsGKSTLl~~L~g~~~ 96 (643)
+++|.||+||||||.-+.|+..+.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999789998798999999999969
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.24 E-value=0.00084 Score=38.79 Aligned_cols=22 Identities=32% Similarity=0.573 Sum_probs=19.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998899988899999896598
Q 006505 74 LAIVGPSGAGKSSLLEILAGKL 95 (643)
Q Consensus 74 ~ai~GpsGsGKSTLl~~L~g~~ 95 (643)
+||+|++++|||||++.|.|..
T Consensus 4 VaiiG~~nvGKSSLin~L~~~~ 25 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSAK 25 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEEC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998999987999999996899
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=96.23 E-value=0.014 Score=31.28 Aligned_cols=42 Identities=19% Similarity=0.318 Sum_probs=30.9
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCCCC-CCCCEEEECCC
Q ss_conf 9984680999988999888999998965989-99618999997
Q 006505 66 CKAKPWEILAIVGPSGAGKSSLLEILAGKLT-PQSGSTFVNGS 107 (643)
Q Consensus 66 ~~i~~Ge~~ai~GpsGsGKSTLl~~L~g~~~-~~~G~I~~~g~ 107 (643)
+=++.|.++-+.||+|+|||||.-.++.... ++.--+++|..
T Consensus 52 GGip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE 94 (268)
T d1xp8a1 52 GGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE 94 (268)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 9866754789805876522799999999997079989999887
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.22 E-value=0.0011 Score=38.14 Aligned_cols=28 Identities=32% Similarity=0.460 Sum_probs=24.4
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8468099998899988899999896598
Q 006505 68 AKPWEILAIVGPSGAGKSSLLEILAGKL 95 (643)
Q Consensus 68 i~~Ge~~ai~GpsGsGKSTLl~~L~g~~ 95 (643)
++.+.++.|+||+||||||+.+.|+..+
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 4678289998999998799999999986
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.22 E-value=0.0019 Score=36.65 Aligned_cols=25 Identities=36% Similarity=0.569 Sum_probs=22.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999889998889999989659899
Q 006505 73 ILAIVGPSGAGKSSLLEILAGKLTP 97 (643)
Q Consensus 73 ~~ai~GpsGsGKSTLl~~L~g~~~~ 97 (643)
-++|+|.+|+|||||+|.|.|...-
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~~~ 82 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIGNE 82 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTT
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 7999899999789999999588867
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.17 E-value=0.0015 Score=37.29 Aligned_cols=23 Identities=39% Similarity=0.671 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998899988899999896598
Q 006505 73 ILAIVGPSGAGKSSLLEILAGKL 95 (643)
Q Consensus 73 ~~ai~GpsGsGKSTLl~~L~g~~ 95 (643)
.++|+|++|+|||||++.|.+..
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999988999999996799
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=96.16 E-value=0.0017 Score=36.92 Aligned_cols=22 Identities=41% Similarity=0.634 Sum_probs=19.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998899988899999896598
Q 006505 74 LAIVGPSGAGKSSLLEILAGKL 95 (643)
Q Consensus 74 ~ai~GpsGsGKSTLl~~L~g~~ 95 (643)
+.|+|++||||||+.+.|+..+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998899999999983
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.15 E-value=0.0019 Score=36.55 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998899988899999896598
Q 006505 73 ILAIVGPSGAGKSSLLEILAGKL 95 (643)
Q Consensus 73 ~~ai~GpsGsGKSTLl~~L~g~~ 95 (643)
++.|+||+||||||..+.|+..+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99997999999899999999986
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=96.12 E-value=0.0022 Score=36.15 Aligned_cols=27 Identities=30% Similarity=0.396 Sum_probs=22.9
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 468099998899988899999896598
Q 006505 69 KPWEILAIVGPSGAGKSSLLEILAGKL 95 (643)
Q Consensus 69 ~~Ge~~ai~GpsGsGKSTLl~~L~g~~ 95 (643)
++|--+.|+||+||||||.-+.|+..+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 996389998999998899999999986
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.11 E-value=0.0019 Score=36.53 Aligned_cols=24 Identities=38% Similarity=0.508 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999988999888999998965989
Q 006505 73 ILAIVGPSGAGKSSLLEILAGKLT 96 (643)
Q Consensus 73 ~~ai~GpsGsGKSTLl~~L~g~~~ 96 (643)
.++++|++|+|||||++.|.|...
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~~ 25 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKKK 25 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC---
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 899999999989999999967775
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=96.08 E-value=0.0018 Score=36.68 Aligned_cols=36 Identities=33% Similarity=0.410 Sum_probs=26.1
Q ss_pred EEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 001047998468099998899988899999896598
Q 006505 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKL 95 (643)
Q Consensus 60 iL~~is~~i~~Ge~~ai~GpsGsGKSTLl~~L~g~~ 95 (643)
+|+.+.-.-...-.++|.||.|||||||++.|...+
T Consensus 43 ll~~~~~~~~~~~~IgitG~pGaGKSTLi~~l~~~~ 78 (327)
T d2p67a1 43 LLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLL 78 (327)
T ss_dssp HHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 999865316983289743899998999999999999
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=96.08 E-value=0.0018 Score=36.65 Aligned_cols=45 Identities=24% Similarity=0.310 Sum_probs=31.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHCCCEEEECCCCCCCCC
Q ss_conf 09999889998889999989659899961899999708903110347898259888999
Q 006505 72 EILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPL 130 (643)
Q Consensus 72 e~~ai~GpsGsGKSTLl~~L~g~~~~~~G~I~~~g~~~~~~~~r~~~~yV~Q~~~l~~~ 130 (643)
=++||.|++||||||+-+.|...+... .-...+..+.+|+.+.+.
T Consensus 81 ~iIGIaG~sgSGKSTla~~L~~lL~~~--------------~~~~~v~~Is~D~F~~~~ 125 (308)
T d1sq5a_ 81 YIISIAGSVAVGKSTTARVLQALLSRW--------------PEHRRVELITTDGFLHPN 125 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHTTS--------------TTCCCEEEEEGGGGBCCH
T ss_pred EEEEEECCCCCCCCHHHHHHHHHHHHH--------------CCCCCEEEEEEEEEECCC
T ss_conf 899996899998768999999997304--------------689965999521568984
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=96.06 E-value=0.0017 Score=36.93 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998899988899999896598
Q 006505 73 ILAIVGPSGAGKSSLLEILAGKL 95 (643)
Q Consensus 73 ~~ai~GpsGsGKSTLl~~L~g~~ 95 (643)
.+.|+||+||||||+.+.|+..+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998899999899999999987
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.05 E-value=0.002 Score=36.49 Aligned_cols=34 Identities=18% Similarity=0.259 Sum_probs=25.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 809999889998889999989659899961899999
Q 006505 71 WEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNG 106 (643)
Q Consensus 71 Ge~~ai~GpsGsGKSTLl~~L~g~~~~~~G~I~~~g 106 (643)
...+.+.||+|+|||||.+.|++.... +-+.+|+
T Consensus 32 P~~ilL~GpPGtGKT~la~~la~~~~~--~~~~i~~ 65 (273)
T d1gvnb_ 32 PTAFLLGGQPGSGKTSLRSAIFEETQG--NVIVIDN 65 (273)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTTT--CCEEECT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHC--CEEEEEC
T ss_conf 979998897998899999999998651--5489832
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.04 E-value=0.0016 Score=36.98 Aligned_cols=23 Identities=39% Similarity=0.557 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998899988899999896598
Q 006505 73 ILAIVGPSGAGKSSLLEILAGKL 95 (643)
Q Consensus 73 ~~ai~GpsGsGKSTLl~~L~g~~ 95 (643)
-++|+|++|+|||||++.|.|..
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999988999999996898
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=95.99 E-value=0.002 Score=36.43 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998899988899999896598
Q 006505 73 ILAIVGPSGAGKSSLLEILAGKL 95 (643)
Q Consensus 73 ~~ai~GpsGsGKSTLl~~L~g~~ 95 (643)
.+.++|++||||||+-+.|+..+
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 88998899998899999999994
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.98 E-value=0.0017 Score=36.94 Aligned_cols=27 Identities=30% Similarity=0.375 Sum_probs=24.1
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 680999988999888999998965989
Q 006505 70 PWEILAIVGPSGAGKSSLLEILAGKLT 96 (643)
Q Consensus 70 ~Ge~~ai~GpsGsGKSTLl~~L~g~~~ 96 (643)
.+.+++|-|+.||||||+++.|+..+.
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 998899987888779999999999973
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.96 E-value=0.0027 Score=35.68 Aligned_cols=23 Identities=48% Similarity=0.715 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998899988899999896598
Q 006505 73 ILAIVGPSGAGKSSLLEILAGKL 95 (643)
Q Consensus 73 ~~ai~GpsGsGKSTLl~~L~g~~ 95 (643)
.++++|.+|+|||||+|.|.|..
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~~ 29 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQK 29 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999799998999999995898
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=95.95 E-value=0.0027 Score=35.63 Aligned_cols=24 Identities=46% Similarity=0.772 Sum_probs=22.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999988999888999998965989
Q 006505 73 ILAIVGPSGAGKSSLLEILAGKLT 96 (643)
Q Consensus 73 ~~ai~GpsGsGKSTLl~~L~g~~~ 96 (643)
+++|.||+||||+|+-+.|+..+.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899779998898999999999969
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.94 E-value=0.0028 Score=35.57 Aligned_cols=25 Identities=32% Similarity=0.372 Sum_probs=21.2
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 4680999988999888999998965
Q 006505 69 KPWEILAIVGPSGAGKSSLLEILAG 93 (643)
Q Consensus 69 ~~Ge~~ai~GpsGsGKSTLl~~L~g 93 (643)
+.-+++.++|++||||||+.+-++.
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9998999989999989999999997
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=95.94 E-value=0.0028 Score=35.52 Aligned_cols=23 Identities=48% Similarity=0.648 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998899988899999896598
Q 006505 73 ILAIVGPSGAGKSSLLEILAGKL 95 (643)
Q Consensus 73 ~~ai~GpsGsGKSTLl~~L~g~~ 95 (643)
.++++|.+|+|||||++.|.|..
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999999999999996888
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.92 E-value=0.0029 Score=35.42 Aligned_cols=30 Identities=27% Similarity=0.236 Sum_probs=25.9
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 799846809999889998889999989659
Q 006505 65 SCKAKPWEILAIVGPSGAGKSSLLEILAGK 94 (643)
Q Consensus 65 s~~i~~Ge~~ai~GpsGsGKSTLl~~L~g~ 94 (643)
.+=+++|+++.|.||+|+|||||.--++..
T Consensus 28 ~GGi~~G~~~li~G~pGsGKT~l~lq~~~~ 57 (251)
T d1szpa2 28 GGGVETGSITELFGEFRTGKSQLCHTLAVT 57 (251)
T ss_dssp TSSEESSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 799869969999838999889999999998
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=95.91 E-value=0.0023 Score=36.04 Aligned_cols=25 Identities=24% Similarity=0.228 Sum_probs=22.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8099998899988899999896598
Q 006505 71 WEILAIVGPSGAGKSSLLEILAGKL 95 (643)
Q Consensus 71 Ge~~ai~GpsGsGKSTLl~~L~g~~ 95 (643)
.-+++|-|+.||||||+++.|+...
T Consensus 9 p~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 9 PFTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 6199988999988899999999870
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=95.90 E-value=0.0029 Score=35.42 Aligned_cols=27 Identities=30% Similarity=0.386 Sum_probs=22.9
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 468099998899988899999896598
Q 006505 69 KPWEILAIVGPSGAGKSSLLEILAGKL 95 (643)
Q Consensus 69 ~~Ge~~ai~GpsGsGKSTLl~~L~g~~ 95 (643)
...-.++|.||.|||||||++.|...+
T Consensus 49 ~~~~~igitG~pGaGKSTli~~l~~~~ 75 (323)
T d2qm8a1 49 GRAIRVGITGVPGVGKSTTIDALGSLL 75 (323)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 981598611799888999999999987
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.90 E-value=0.0032 Score=35.15 Aligned_cols=41 Identities=24% Similarity=0.258 Sum_probs=30.2
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCCC--CCCEEEECCCCC
Q ss_conf 46809999889998889999989659899--961899999708
Q 006505 69 KPWEILAIVGPSGAGKSSLLEILAGKLTP--QSGSTFVNGSPI 109 (643)
Q Consensus 69 ~~Ge~~ai~GpsGsGKSTLl~~L~g~~~~--~~G~I~~~g~~~ 109 (643)
++|.++-+.|.|||||||+.+.|...+.. ..-.+.++|..+
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~i 64 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 64 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHH
T ss_conf 9986999989999998999999998877742750899753678
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.88 E-value=0.0027 Score=35.66 Aligned_cols=22 Identities=32% Similarity=0.540 Sum_probs=19.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998899988899999896598
Q 006505 74 LAIVGPSGAGKSSLLEILAGKL 95 (643)
Q Consensus 74 ~ai~GpsGsGKSTLl~~L~g~~ 95 (643)
+.|+||+||||||+.+.|+..+
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998899999899999999987
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.87 E-value=0.0027 Score=35.62 Aligned_cols=22 Identities=41% Similarity=0.551 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998899988899999896598
Q 006505 74 LAIVGPSGAGKSSLLEILAGKL 95 (643)
Q Consensus 74 ~ai~GpsGsGKSTLl~~L~g~~ 95 (643)
+.++|++||||||+.+.|+..+
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8998899998899999999984
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=95.86 E-value=0.0017 Score=36.86 Aligned_cols=22 Identities=41% Similarity=0.557 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998899988899999896598
Q 006505 74 LAIVGPSGAGKSSLLEILAGKL 95 (643)
Q Consensus 74 ~ai~GpsGsGKSTLl~~L~g~~ 95 (643)
+||+|++++|||||++.|.|..
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998999998999999996899
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=95.85 E-value=0.0028 Score=35.51 Aligned_cols=25 Identities=32% Similarity=0.453 Sum_probs=21.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 0999988999888999998965989
Q 006505 72 EILAIVGPSGAGKSSLLEILAGKLT 96 (643)
Q Consensus 72 e~~ai~GpsGsGKSTLl~~L~g~~~ 96 (643)
.++.|.|++||||||+.+.|+.++.
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 1999989899898999999999998
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=95.82 E-value=0.0027 Score=35.65 Aligned_cols=25 Identities=28% Similarity=0.513 Sum_probs=21.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999889998889999989659899
Q 006505 73 ILAIVGPSGAGKSSLLEILAGKLTP 97 (643)
Q Consensus 73 ~~ai~GpsGsGKSTLl~~L~g~~~~ 97 (643)
-++|+|.+|+|||||+|.|.|....
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~~~ 58 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGERVV 58 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSCCS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCE
T ss_conf 8999899998699999998589841
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.80 E-value=0.0059 Score=33.51 Aligned_cols=31 Identities=16% Similarity=0.252 Sum_probs=26.6
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 7998468099998899988899999896598
Q 006505 65 SCKAKPWEILAIVGPSGAGKSSLLEILAGKL 95 (643)
Q Consensus 65 s~~i~~Ge~~ai~GpsGsGKSTLl~~L~g~~ 95 (643)
++-+++|+++.|.|++|+|||||.--++-..
T Consensus 28 ~GGl~~G~l~~i~G~~G~GKT~~~l~~a~~~ 58 (258)
T d2i1qa2 28 GGGLESQSVTEFAGVFGSGKTQIMHQSCVNL 58 (258)
T ss_dssp TSSEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 7986288599999179999899999999999
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=95.78 E-value=0.0028 Score=35.54 Aligned_cols=22 Identities=36% Similarity=0.608 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999889998889999989659
Q 006505 73 ILAIVGPSGAGKSSLLEILAGK 94 (643)
Q Consensus 73 ~~ai~GpsGsGKSTLl~~L~g~ 94 (643)
++||.|++||||||+.+.|..+
T Consensus 5 IIgitG~~gSGKstva~~l~~~ 26 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRSW 26 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999898877899999999987
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=95.76 E-value=0.0014 Score=37.48 Aligned_cols=39 Identities=18% Similarity=0.236 Sum_probs=29.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHCCCEEEECCCCCC
Q ss_conf 9999889998889999989659899961899999708903110347898259888
Q 006505 73 ILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTL 127 (643)
Q Consensus 73 ~~ai~GpsGsGKSTLl~~L~g~~~~~~G~I~~~g~~~~~~~~r~~~~yV~Q~~~l 127 (643)
++||.|+|||||||+.+.|...... . .-....+.+|+.+
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~~--------------~--~v~~~iI~~Dsfy 44 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFRR--------------E--GVKAVSIEGDAFH 44 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHH--------------H--TCCEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH--------------C--CCCEEEEECCCCC
T ss_conf 9999899978099999999999715--------------6--9976999477787
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.73 E-value=0.0035 Score=34.95 Aligned_cols=28 Identities=25% Similarity=0.306 Sum_probs=24.3
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4680999988999888999998965989
Q 006505 69 KPWEILAIVGPSGAGKSSLLEILAGKLT 96 (643)
Q Consensus 69 ~~Ge~~ai~GpsGsGKSTLl~~L~g~~~ 96 (643)
+.|.+++|-|+.||||||+.+.|+..+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9805999989988899999999999998
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.71 E-value=0.0039 Score=34.65 Aligned_cols=25 Identities=24% Similarity=0.418 Sum_probs=21.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 0999988999888999998965989
Q 006505 72 EILAIVGPSGAGKSSLLEILAGKLT 96 (643)
Q Consensus 72 e~~ai~GpsGsGKSTLl~~L~g~~~ 96 (643)
.++.++|++||||||+.+.|+..+.
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 8999989999999999999999997
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.71 E-value=0.0021 Score=36.26 Aligned_cols=23 Identities=35% Similarity=0.553 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998899988899999896598
Q 006505 73 ILAIVGPSGAGKSSLLEILAGKL 95 (643)
Q Consensus 73 ~~ai~GpsGsGKSTLl~~L~g~~ 95 (643)
-++|+|++|+|||||++.+.+-.
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999989899999996788
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.70 E-value=0.0028 Score=35.54 Aligned_cols=43 Identities=14% Similarity=0.248 Sum_probs=30.9
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHC-CCCCCCCEEEECCCC
Q ss_conf 9984680999988999888999998965-989996189999970
Q 006505 66 CKAKPWEILAIVGPSGAGKSSLLEILAG-KLTPQSGSTFVNGSP 108 (643)
Q Consensus 66 ~~i~~Ge~~ai~GpsGsGKSTLl~~L~g-~~~~~~G~I~~~g~~ 108 (643)
+=++.|.++.+.||+|+|||||.-.++. ....+.--|++|...
T Consensus 55 gG~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~ 98 (269)
T d1mo6a1 55 GGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEH 98 (269)
T ss_dssp SSBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 98666336999648874889999999998754898899998976
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.70 E-value=0.0047 Score=34.13 Aligned_cols=28 Identities=29% Similarity=0.388 Sum_probs=24.3
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 7998468099998899988899999896
Q 006505 65 SCKAKPWEILAIVGPSGAGKSSLLEILA 92 (643)
Q Consensus 65 s~~i~~Ge~~ai~GpsGsGKSTLl~~L~ 92 (643)
.+=+++|+++.|.||+|+|||||.--++
T Consensus 30 ~GGlp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 30 GGGIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp TSSEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 6995588799998589898899999999
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=95.65 E-value=0.0041 Score=34.47 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998899988899999896598
Q 006505 73 ILAIVGPSGAGKSSLLEILAGKL 95 (643)
Q Consensus 73 ~~ai~GpsGsGKSTLl~~L~g~~ 95 (643)
.+.|+||+||||||+.+.|+..+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899998799999999987
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=95.63 E-value=0.0035 Score=34.92 Aligned_cols=117 Identities=19% Similarity=0.257 Sum_probs=68.4
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 46809999889998889999989659899961899999708903110347898259888999999999999987049998
Q 006505 69 KPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLP 148 (643)
Q Consensus 69 ~~Ge~~ai~GpsGsGKSTLl~~L~g~~~~~~G~I~~~g~~~~~~~~r~~~~yV~Q~~~l~~~lTV~E~l~f~~~l~~~~~ 148 (643)
.++.++.+.||.||||||.+..+.........+|.-=..|+.. .+++.+ ...
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiEdPiE~---------------~~~~~~---------q~~---- 207 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEF---------------DIDGIG---------QTQ---- 207 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCS---------------CCSSSE---------EEE----
T ss_pred HHHCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCC---------------CCCCCC---------EEE----
T ss_conf 4105489876787774477999866625787469996267434---------------567887---------026----
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999399012231107976787797898999999998409987898199999999999999999999997
Q 006505 149 QAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAE 228 (643)
Q Consensus 149 ~~~~~~~v~~~l~~lgL~~~~~~~~g~~~~~~lSgGerqRvsia~aL~~~p~illlDEPTsgLD~~~~~~i~~~L~~l~~ 228 (643)
... ..|+.---++..+|-.+|++++..|.. |+.++...+ +.+.
T Consensus 208 ----------------v~~--------------~~~~~~~~~l~~~lR~dPDvi~igEiR---d~~ta~~a~----~aa~ 250 (401)
T d1p9ra_ 208 ----------------VNP--------------RVDMTFARGLRAILRQDPDVVMVGEIR---DLETAQIAV----QASL 250 (401)
T ss_dssp ----------------CBG--------------GGTBCHHHHHHHHGGGCCSEEEESCCC---SHHHHHHHH----HHHH
T ss_pred ----------------ECC--------------CCCCCHHHHHHHHHHHCCCEEEECCCC---CHHHHHHHH----HHHH
T ss_conf ----------------558--------------767799999999984138889845768---759999999----9972
Q ss_pred HCCCEEEEEECCCCHHHHHHCCEEE
Q ss_conf 1998999980588558986268799
Q 006505 229 TRGRTVILSIHQPGFRIVKMFNSIL 253 (643)
Q Consensus 229 ~~g~tii~~~H~~~~~~~~~~D~i~ 253 (643)
.|..|+.+.|-.+ .....+|+.
T Consensus 251 -tGhlV~tTlHa~~--a~~~~~Rl~ 272 (401)
T d1p9ra_ 251 -TGHLVMSTLHTNT--AVGAVTRLR 272 (401)
T ss_dssp -TTCEEEEEECCSS--SHHHHHHHH
T ss_pred -CCCEEEEEECCCC--HHHHHHHHH
T ss_conf -4985899833676--676654321
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.58 E-value=0.0042 Score=34.45 Aligned_cols=23 Identities=43% Similarity=0.639 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998899988899999896598
Q 006505 73 ILAIVGPSGAGKSSLLEILAGKL 95 (643)
Q Consensus 73 ~~ai~GpsGsGKSTLl~~L~g~~ 95 (643)
-+.|+||+||||||+-+.|+..+
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999799999999998
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.57 E-value=0.0037 Score=34.77 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998899988899999896598
Q 006505 73 ILAIVGPSGAGKSSLLEILAGKL 95 (643)
Q Consensus 73 ~~ai~GpsGsGKSTLl~~L~g~~ 95 (643)
-++|+|++|+|||||++.+.+-.
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~ 24 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQ 24 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999989899999998099
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=95.57 E-value=0.0036 Score=34.82 Aligned_cols=26 Identities=27% Similarity=0.465 Sum_probs=21.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 68099998899988899999896598
Q 006505 70 PWEILAIVGPSGAGKSSLLEILAGKL 95 (643)
Q Consensus 70 ~Ge~~ai~GpsGsGKSTLl~~L~g~~ 95 (643)
|+.-+.+.||+|+|||.|.++|+...
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~~ 73 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKLA 73 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 98669998999988889999986213
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=95.56 E-value=0.0038 Score=34.72 Aligned_cols=22 Identities=32% Similarity=0.385 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998899988899999896598
Q 006505 74 LAIVGPSGAGKSSLLEILAGKL 95 (643)
Q Consensus 74 ~ai~GpsGsGKSTLl~~L~g~~ 95 (643)
+.++|++|+|||||++.+.+-.
T Consensus 3 ivlvG~~~vGKSsLi~~l~~~~ 24 (160)
T d1r8sa_ 3 ILMVGLDAAGKTTILYKLKLGE 24 (160)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999989899999996598
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.56 E-value=0.0045 Score=34.25 Aligned_cols=27 Identities=26% Similarity=0.412 Sum_probs=23.9
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 680999988999888999998965989
Q 006505 70 PWEILAIVGPSGAGKSSLLEILAGKLT 96 (643)
Q Consensus 70 ~Ge~~ai~GpsGsGKSTLl~~L~g~~~ 96 (643)
.|.+++|-|+.||||||+.+.|+..+.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 987899989988879999999999999
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.53 E-value=0.004 Score=34.60 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998899988899999896598
Q 006505 73 ILAIVGPSGAGKSSLLEILAGKL 95 (643)
Q Consensus 73 ~~ai~GpsGsGKSTLl~~L~g~~ 95 (643)
-++++|++|+|||||++.+.+-.
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.51 E-value=0.0055 Score=33.71 Aligned_cols=25 Identities=28% Similarity=0.543 Sum_probs=21.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 0999988999888999998965989
Q 006505 72 EILAIVGPSGAGKSSLLEILAGKLT 96 (643)
Q Consensus 72 e~~ai~GpsGsGKSTLl~~L~g~~~ 96 (643)
..+.+.||+|+||||+.++++....
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 4499987999988899999999987
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=95.49 E-value=0.0052 Score=33.84 Aligned_cols=25 Identities=48% Similarity=0.561 Sum_probs=21.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8099998899988899999896598
Q 006505 71 WEILAIVGPSGAGKSSLLEILAGKL 95 (643)
Q Consensus 71 Ge~~ai~GpsGsGKSTLl~~L~g~~ 95 (643)
|=-++++|++++|||||++.|.|..
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9899998999998999999996888
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=95.49 E-value=0.0047 Score=34.12 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998899988899999896598
Q 006505 73 ILAIVGPSGAGKSSLLEILAGKL 95 (643)
Q Consensus 73 ~~ai~GpsGsGKSTLl~~L~g~~ 95 (643)
-+.|+||+||||||+-+.|+..+
T Consensus 8 rIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHB
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 69998899998799999999997
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=95.45 E-value=0.0059 Score=33.52 Aligned_cols=22 Identities=23% Similarity=0.587 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999889998889999989659
Q 006505 73 ILAIVGPSGAGKSSLLEILAGK 94 (643)
Q Consensus 73 ~~ai~GpsGsGKSTLl~~L~g~ 94 (643)
++||.|+.||||||+.+.+...
T Consensus 4 iIgITG~igSGKStv~~~l~~~ 25 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTDL 25 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9998888878899999999987
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=95.44 E-value=0.0067 Score=33.19 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999988999888999998965989
Q 006505 73 ILAIVGPSGAGKSSLLEILAGKLT 96 (643)
Q Consensus 73 ~~ai~GpsGsGKSTLl~~L~g~~~ 96 (643)
-++++|++|+|||||++.+.+...
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~~ 27 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGEDV 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 999999999899999999808998
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.43 E-value=0.0062 Score=33.39 Aligned_cols=28 Identities=21% Similarity=0.192 Sum_probs=25.1
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 9984680999988999888999998965
Q 006505 66 CKAKPWEILAIVGPSGAGKSSLLEILAG 93 (643)
Q Consensus 66 ~~i~~Ge~~ai~GpsGsGKSTLl~~L~g 93 (643)
+=+++|+++.|.||+|+|||+|.-.++.
T Consensus 32 GGip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 32 GGIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9976897999988998878899999999
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.43 E-value=0.0042 Score=34.45 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998899988899999896598
Q 006505 73 ILAIVGPSGAGKSSLLEILAGKL 95 (643)
Q Consensus 73 ~~ai~GpsGsGKSTLl~~L~g~~ 95 (643)
.+.|+||+||||||..+.|+..+
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998799999899999999986
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=95.42 E-value=0.0045 Score=34.25 Aligned_cols=23 Identities=35% Similarity=0.469 Sum_probs=20.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99988999888999998965989
Q 006505 74 LAIVGPSGAGKSSLLEILAGKLT 96 (643)
Q Consensus 74 ~ai~GpsGsGKSTLl~~L~g~~~ 96 (643)
++|+|++|+|||||++.+.+...
T Consensus 8 I~ivG~~~vGKSSLi~~~~~~~~ 30 (169)
T d1upta_ 8 ILILGLDGAGKTTILYRLQVGEV 30 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHSSC
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99999999899999999967987
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=95.42 E-value=0.0052 Score=33.83 Aligned_cols=26 Identities=31% Similarity=0.392 Sum_probs=21.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 68099998899988899999896598
Q 006505 70 PWEILAIVGPSGAGKSSLLEILAGKL 95 (643)
Q Consensus 70 ~Ge~~ai~GpsGsGKSTLl~~L~g~~ 95 (643)
.+..+.|.||+|+|||||++.++...
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 59879998699982999999999977
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.42 E-value=0.0053 Score=33.79 Aligned_cols=28 Identities=32% Similarity=0.445 Sum_probs=25.2
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 6809999889998889999989659899
Q 006505 70 PWEILAIVGPSGAGKSSLLEILAGKLTP 97 (643)
Q Consensus 70 ~Ge~~ai~GpsGsGKSTLl~~L~g~~~~ 97 (643)
.|.++++-|+.||||||+.+.|+..+..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~ 29 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP 29 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 7689999899888699999999999971
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=95.31 E-value=0.0046 Score=34.21 Aligned_cols=112 Identities=11% Similarity=0.083 Sum_probs=55.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCH
Q ss_conf 68099998899988899999896598999618999997089031103478982598889999999999999870499989
Q 006505 70 PWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQ 149 (643)
Q Consensus 70 ~Ge~~ai~GpsGsGKSTLl~~L~g~~~~~~G~I~~~g~~~~~~~~r~~~~yV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~ 149 (643)
.+.+++++||+|+||||.+-=|+.+... ..+.++.+.-|..-. --.|.|.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~~----------------~g~kV~lit~Dt~R~---gA~eQL~----------- 54 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQN----------------LGKKVMFCAGDTFRA---AGGTQLS----------- 54 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT----------------TTCCEEEECCCCSST---THHHHHH-----------
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHH----------------CCCCEEEEEECCCCC---CCHHHHH-----------
T ss_conf 9779999899999889999999999997----------------799079998136665---4026676-----------
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-CCCHHHHHHHHHHHHHH
Q ss_conf 999999999999939901223110797678779789899999999840998789819999-99999999999999999
Q 006505 150 AQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTS-GLDSTSALQIIDMLKVM 226 (643)
Q Consensus 150 ~~~~~~v~~~l~~lgL~~~~~~~~g~~~~~~lSgGerqRvsia~aL~~~p~illlDEPTs-gLD~~~~~~i~~~L~~l 226 (643)
.+.+.+++.-.. ..... .-.+.-+-.+..+-..+-+++|.|-|=. -.|.....++.++.+..
T Consensus 55 --------~~a~~l~i~~~~-----~~~~~--d~~~~~~~~~~~~~~~~~d~ilIDTaGr~~~d~~l~~el~~~~~~~ 117 (207)
T d1okkd2 55 --------EWGKRLSIPVIQ-----GPEGT--DPAALAYDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAI 117 (207)
T ss_dssp --------HHHHHHTCCEEC-----CCTTC--CHHHHHHHHHHHHHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHH
T ss_pred --------HCCCCCCCEEEE-----CCCCC--CHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf --------405456823896-----16774--2788999989999987999997175222311277888877777776
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.31 E-value=0.0059 Score=33.52 Aligned_cols=22 Identities=32% Similarity=0.693 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998899988899999896598
Q 006505 74 LAIVGPSGAGKSSLLEILAGKL 95 (643)
Q Consensus 74 ~ai~GpsGsGKSTLl~~L~g~~ 95 (643)
+.|+||.||||||+.+.|+..+
T Consensus 5 Ivl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 5 MVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999999899999999996
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=95.30 E-value=0.0024 Score=35.89 Aligned_cols=24 Identities=42% Similarity=0.508 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999988999888999998965989
Q 006505 73 ILAIVGPSGAGKSSLLEILAGKLT 96 (643)
Q Consensus 73 ~~ai~GpsGsGKSTLl~~L~g~~~ 96 (643)
-++|+|++++|||||+|.|.+...
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~~ 41 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQKS 41 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 899988999989999999858985
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.29 E-value=0.0067 Score=33.19 Aligned_cols=52 Identities=29% Similarity=0.333 Sum_probs=33.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHCCCEEEECCCCCCCCCCCHHHHHHH
Q ss_conf 09999889998889999989659899961899999708903110347898259888999999999999
Q 006505 72 EILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTVEETLMF 139 (643)
Q Consensus 72 e~~ai~GpsGsGKSTLl~~L~g~~~~~~G~I~~~g~~~~~~~~r~~~~yV~Q~~~l~~~lTV~E~l~f 139 (643)
=++||-|+.|||||||.+.|...+.. .......+..+..||... |-.|-..+
T Consensus 28 ~iIGi~G~qGSGKSTl~~~l~~~L~~-------------~~~~~~~v~~iS~DdfY~---t~~~r~~L 79 (286)
T d1odfa_ 28 LFIFFSGPQGSGKSFTSIQIYNHLME-------------KYGGEKSIGYASIDDFYL---THEDQLKL 79 (286)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH-------------HHGGGSCEEEEEGGGGBC---CHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH-------------HHCCCCCEEEECCCCCCC---CHHHHHHH
T ss_conf 89983799878899999999999998-------------727786067635677778---88999998
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=95.28 E-value=0.0053 Score=33.80 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=20.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998899988899999896598
Q 006505 74 LAIVGPSGAGKSSLLEILAGKL 95 (643)
Q Consensus 74 ~ai~GpsGsGKSTLl~~L~g~~ 95 (643)
+||+|+..||||||++.|.+..
T Consensus 8 IaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCHHHHHHHHHHHC
T ss_conf 9999077870999999999743
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.27 E-value=0.0062 Score=33.37 Aligned_cols=23 Identities=39% Similarity=0.586 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998899988899999896598
Q 006505 73 ILAIVGPSGAGKSSLLEILAGKL 95 (643)
Q Consensus 73 ~~ai~GpsGsGKSTLl~~L~g~~ 95 (643)
.+.|.||+|+||||+.++++...
T Consensus 47 ~lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 69997899974879999999998
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=95.19 E-value=0.0071 Score=33.02 Aligned_cols=22 Identities=36% Similarity=0.584 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999889998889999989659
Q 006505 73 ILAIVGPSGAGKSSLLEILAGK 94 (643)
Q Consensus 73 ~~ai~GpsGsGKSTLl~~L~g~ 94 (643)
++||.|+.||||||..+++..+
T Consensus 5 iIgitG~igSGKStv~~~l~~~ 26 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFADL 26 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9997898868899999999987
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=95.04 E-value=0.019 Score=30.33 Aligned_cols=34 Identities=26% Similarity=0.180 Sum_probs=26.3
Q ss_pred CEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 10010479984680999988999888999998965
Q 006505 59 RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAG 93 (643)
Q Consensus 59 ~iL~~is~~i~~Ge~~ai~GpsGsGKSTLl~~L~g 93 (643)
..+|.....+ .|.-+.|.||||+||||+.-.|..
T Consensus 4 ~~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 4 AQIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred CEEEEEEEEE-CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 3178999999-999999981899998999999998
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=95.03 E-value=0.0063 Score=33.32 Aligned_cols=25 Identities=36% Similarity=0.696 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999889998889999989659899
Q 006505 73 ILAIVGPSGAGKSSLLEILAGKLTP 97 (643)
Q Consensus 73 ~~ai~GpsGsGKSTLl~~L~g~~~~ 97 (643)
-+.+.||+|+||||+.++++.....
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~~ 61 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQT 61 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCC
T ss_conf 4898799997388999999850388
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=94.95 E-value=0.011 Score=31.93 Aligned_cols=34 Identities=29% Similarity=0.440 Sum_probs=24.7
Q ss_pred EEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 001047998468099998899988899999896598
Q 006505 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKL 95 (643)
Q Consensus 60 iL~~is~~i~~Ge~~ai~GpsGsGKSTLl~~L~g~~ 95 (643)
.++++.. ++..-+.+.||+|+|||++.+.|+...
T Consensus 36 ~~~~~g~--~~~~~iLL~GppGtGKT~la~~iA~~~ 69 (256)
T d1lv7a_ 36 RFQKLGG--KIPKGVLMVGPPGTGKTLLAKAIAGEA 69 (256)
T ss_dssp GC-------CCCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHCCC--CCCCEEEEECCCCCCCCHHHHHHHHHC
T ss_conf 9998699--988867866899888228999999982
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=94.91 E-value=0.0088 Score=32.43 Aligned_cols=22 Identities=32% Similarity=0.694 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999889998889999989659
Q 006505 73 ILAIVGPSGAGKSSLLEILAGK 94 (643)
Q Consensus 73 ~~ai~GpsGsGKSTLl~~L~g~ 94 (643)
++||+|...||||||++.|.+.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 7999969985499999999823
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=94.89 E-value=0.0071 Score=33.01 Aligned_cols=24 Identities=29% Similarity=0.562 Sum_probs=21.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999988999888999998965989
Q 006505 73 ILAIVGPSGAGKSSLLEILAGKLT 96 (643)
Q Consensus 73 ~~ai~GpsGsGKSTLl~~L~g~~~ 96 (643)
=+.++||+|+|||-|.+.||+...
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~ 74 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLAN 74 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 479989999889999999998738
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=94.84 E-value=0.0085 Score=32.54 Aligned_cols=22 Identities=27% Similarity=0.528 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999889998889999989659
Q 006505 73 ILAIVGPSGAGKSSLLEILAGK 94 (643)
Q Consensus 73 ~~ai~GpsGsGKSTLl~~L~g~ 94 (643)
-++++|++|+|||||++.+.+-
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998989999999719
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=94.83 E-value=0.0084 Score=32.57 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998899988899999896598
Q 006505 73 ILAIVGPSGAGKSSLLEILAGKL 95 (643)
Q Consensus 73 ~~ai~GpsGsGKSTLl~~L~g~~ 95 (643)
-++++|.+|+|||||++.|.+..
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~~ 39 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMNE 39 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999989899999996688
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=94.81 E-value=0.0087 Score=32.47 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=20.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 099998899988899999896598
Q 006505 72 EILAIVGPSGAGKSSLLEILAGKL 95 (643)
Q Consensus 72 e~~ai~GpsGsGKSTLl~~L~g~~ 95 (643)
.-+.+.||+|+|||++.+.|+...
T Consensus 41 ~~vLL~GppGtGKT~la~alA~~~ 64 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAAKIAEES 64 (246)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 079988969998899999986201
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=94.80 E-value=0.011 Score=31.93 Aligned_cols=28 Identities=21% Similarity=0.306 Sum_probs=23.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 6809999889998889999989659899
Q 006505 70 PWEILAIVGPSGAGKSSLLEILAGKLTP 97 (643)
Q Consensus 70 ~Ge~~ai~GpsGsGKSTLl~~L~g~~~~ 97 (643)
+...+.|.||+|+||||+++.++..+..
T Consensus 42 ~~~~lll~GppGtGKT~l~~~l~~~l~~ 69 (276)
T d1fnna2 42 HYPRATLLGRPGTGKTVTLRKLWELYKD 69 (276)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 8881688898999899999999999754
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=94.79 E-value=0.009 Score=32.37 Aligned_cols=22 Identities=41% Similarity=0.815 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998899988899999896598
Q 006505 74 LAIVGPSGAGKSSLLEILAGKL 95 (643)
Q Consensus 74 ~ai~GpsGsGKSTLl~~L~g~~ 95 (643)
+.+.||+|.||||+.+++++..
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~ 59 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHEL 59 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8988979987888999999984
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.77 E-value=0.009 Score=32.38 Aligned_cols=28 Identities=29% Similarity=0.481 Sum_probs=23.2
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8468099998899988899999896598
Q 006505 68 AKPWEILAIVGPSGAGKSSLLEILAGKL 95 (643)
Q Consensus 68 i~~Ge~~ai~GpsGsGKSTLl~~L~g~~ 95 (643)
+++..-+.+.||+|+|||+|.+.+++..
T Consensus 38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 38 MTPSKGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CCCCCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 9988757887899876304778878771
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.75 E-value=0.01 Score=32.02 Aligned_cols=22 Identities=36% Similarity=0.658 Sum_probs=19.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998899988899999896598
Q 006505 74 LAIVGPSGAGKSSLLEILAGKL 95 (643)
Q Consensus 74 ~ai~GpsGsGKSTLl~~L~g~~ 95 (643)
+.+.||+|+||||+.++++..+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998499999999997
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=94.67 E-value=0.023 Score=29.88 Aligned_cols=35 Identities=29% Similarity=0.210 Sum_probs=26.2
Q ss_pred CEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 100104799846809999889998889999989659
Q 006505 59 RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGK 94 (643)
Q Consensus 59 ~iL~~is~~i~~Ge~~ai~GpsGsGKSTLl~~L~g~ 94 (643)
..+|. +...-.|.-+.|.|+||+||||+.-.|..+
T Consensus 3 ~~lH~-~~v~~~g~gvl~~G~sG~GKStlal~l~~~ 37 (176)
T d1kkma_ 3 RSMHG-VLVDIYGLGVLITGDSGVGKSETALELVQR 37 (176)
T ss_dssp EEEEE-EEEEETTEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CEEEE-EEEEECCEEEEEEECCCCCHHHHHHHHHHC
T ss_conf 32899-999999999999808999989999999985
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=94.65 E-value=0.015 Score=31.06 Aligned_cols=109 Identities=16% Similarity=0.160 Sum_probs=53.9
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCH
Q ss_conf 68099998899988899999896598999618999997089031103478982598889999999999999870499989
Q 006505 70 PWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQ 149 (643)
Q Consensus 70 ~Ge~~ai~GpsGsGKSTLl~~L~g~~~~~~G~I~~~g~~~~~~~~r~~~~yV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~ 149 (643)
...++.++||+|+||||.+-=|+.++.. + .+.++.+.-|..- + -..|
T Consensus 9 ~~~vi~lvGp~GvGKTTTiaKLA~~~~~--------------~--g~kV~lit~Dt~R-~--gA~e-------------- 55 (207)
T d1ls1a2 9 DRNLWFLVGLQGSGKTTTAAKLALYYKG--------------K--GRRPLLVAADTQR-P--AARE-------------- 55 (207)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHH--------------T--TCCEEEEECCSSC-H--HHHH--------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH--------------C--CCCEEEEECCCCC-C--HHHH--------------
T ss_conf 9868999899999889999999999997--------------7--9927999544346-4--0888--------------
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC-CCCCHHHHHHHHHHH
Q ss_conf 99999999999993990122311079767877978989999999984099878981999-999999999999999
Q 006505 150 AQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPT-SGLDSTSALQIIDML 223 (643)
Q Consensus 150 ~~~~~~v~~~l~~lgL~~~~~~~~g~~~~~~lSgGerqRvsia~aL~~~p~illlDEPT-sgLD~~~~~~i~~~L 223 (643)
....+-+.+++.-.. ...+. +--+-.+-++..+...+-+++|.|-|= +..|.....++.++.
T Consensus 56 -----QL~~~a~~l~v~~~~-----~~~~~--~~~~~~~~~~~~~~~~~~d~vlIDTaGr~~~d~~~~~el~~~~ 118 (207)
T d1ls1a2 56 -----QLRLLGEKVGVPVLE-----VMDGE--SPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLK 118 (207)
T ss_dssp -----HHHHHHHHHTCCEEE-----CCTTC--CHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHH
T ss_pred -----HHHHHHHHCCCCCCC-----CCCCC--HHHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHH
T ss_conf -----899999862886311-----12442--0367888898887633676403345442000036688999998
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.49 E-value=0.014 Score=31.12 Aligned_cols=24 Identities=46% Similarity=0.776 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999988999888999998965989
Q 006505 73 ILAIVGPSGAGKSSLLEILAGKLT 96 (643)
Q Consensus 73 ~~ai~GpsGsGKSTLl~~L~g~~~ 96 (643)
+++|-|+-||||||+++.|...+.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899989987899999999999998
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=94.46 E-value=0.016 Score=30.75 Aligned_cols=29 Identities=21% Similarity=0.285 Sum_probs=25.4
Q ss_pred EEECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 98468099998899988899999896598
Q 006505 67 KAKPWEILAIVGPSGAGKSSLLEILAGKL 95 (643)
Q Consensus 67 ~i~~Ge~~ai~GpsGsGKSTLl~~L~g~~ 95 (643)
..+||.++.+-|+=|||||||.+.++.-+
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~l 57 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 57998299996687765889999987642
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=94.45 E-value=0.012 Score=31.55 Aligned_cols=23 Identities=39% Similarity=0.694 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998899988899999896598
Q 006505 73 ILAIVGPSGAGKSSLLEILAGKL 95 (643)
Q Consensus 73 ~~ai~GpsGsGKSTLl~~L~g~~ 95 (643)
-+.+.||+|+|||++.+.++...
T Consensus 44 giLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHC
T ss_conf 48876689888359999999873
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.45 E-value=0.014 Score=31.22 Aligned_cols=23 Identities=26% Similarity=0.515 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998899988899999896598
Q 006505 73 ILAIVGPSGAGKSSLLEILAGKL 95 (643)
Q Consensus 73 ~~ai~GpsGsGKSTLl~~L~g~~ 95 (643)
-+.+.||+|+|||++.++++...
T Consensus 40 giLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 40 GILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCCHHHHHHHHHHH
T ss_conf 46876699888308999999874
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.43 E-value=0.011 Score=31.79 Aligned_cols=26 Identities=50% Similarity=0.657 Sum_probs=22.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 68099998899988899999896598
Q 006505 70 PWEILAIVGPSGAGKSSLLEILAGKL 95 (643)
Q Consensus 70 ~Ge~~ai~GpsGsGKSTLl~~L~g~~ 95 (643)
|=-+++|+||-++|||||||.|.|..
T Consensus 31 ~v~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 31 PMVVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred CEEEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 87999988999997999999980998
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.39 E-value=0.013 Score=31.41 Aligned_cols=22 Identities=36% Similarity=0.588 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998899988899999896598
Q 006505 74 LAIVGPSGAGKSSLLEILAGKL 95 (643)
Q Consensus 74 ~ai~GpsGsGKSTLl~~L~g~~ 95 (643)
++++|++|+|||||++.+.+-.
T Consensus 5 i~~vG~~~vGKSsLi~~~~~~~ 26 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVNDK 26 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999969899999997098
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=94.37 E-value=0.011 Score=31.89 Aligned_cols=96 Identities=17% Similarity=0.198 Sum_probs=52.3
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 46809999889998889999989659899961899999708903110347898259888999999999999987049998
Q 006505 69 KPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLP 148 (643)
Q Consensus 69 ~~Ge~~ai~GpsGsGKSTLl~~L~g~~~~~~G~I~~~g~~~~~~~~r~~~~yV~Q~~~l~~~lTV~E~l~f~~~l~~~~~ 148 (643)
++..+++++||+|+||||.+-=|+.++.. -.+.++.+.-|..-
T Consensus 9 ~~p~vi~lvGptGvGKTTTiAKLAa~~~~----------------~~~kV~lit~Dt~R--------------------- 51 (213)
T d1vmaa2 9 EPPFVIMVVGVNGTGKTTSCGKLAKMFVD----------------EGKSVVLAAADTFR--------------------- 51 (213)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHH----------------TTCCEEEEEECTTC---------------------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHH----------------CCCCEEEEEECCCC---------------------
T ss_conf 99989999899999889999999999997----------------79906999601334---------------------
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 9999999999999939901223110797678779789899999999840998789819999
Q 006505 149 QAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTS 209 (643)
Q Consensus 149 ~~~~~~~v~~~l~~lgL~~~~~~~~g~~~~~~lSgGerqRvsia~aL~~~p~illlDEPTs 209 (643)
.-..++...+.+.+++.-.. ... +-.--.-.+-..+.+...+-+++|.|-|=.
T Consensus 52 -~gA~eQL~~~a~~l~i~~~~-----~~~--~~d~~~~~~~~~~~~~~~~~d~ilIDTaGr 104 (213)
T d1vmaa2 52 -AAAIEQLKIWGERVGATVIS-----HSE--GADPAAVAFDAVAHALARNKDVVIIDTAGR 104 (213)
T ss_dssp -HHHHHHHHHHHHHHTCEEEC-----CST--TCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred -CCHHHHHHHHHHHCCCCCCC-----CCC--CCCHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf -20467888776432764103-----677--776899878878999876999899824553
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=94.31 E-value=0.011 Score=31.77 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998899988899999896598
Q 006505 73 ILAIVGPSGAGKSSLLEILAGKL 95 (643)
Q Consensus 73 ~~ai~GpsGsGKSTLl~~L~g~~ 95 (643)
-++++|++|+|||||++.+.+..
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~~ 40 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASED 40 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999989999999996487
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.31 E-value=0.031 Score=29.00 Aligned_cols=21 Identities=38% Similarity=0.574 Sum_probs=18.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999889998889999989659
Q 006505 74 LAIVGPSGAGKSSLLEILAGK 94 (643)
Q Consensus 74 ~ai~GpsGsGKSTLl~~L~g~ 94 (643)
++++|.+|+|||||++-+.+-
T Consensus 5 i~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998997989999999709
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.30 E-value=0.014 Score=31.28 Aligned_cols=21 Identities=38% Similarity=0.529 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999889998889999989659
Q 006505 74 LAIVGPSGAGKSSLLEILAGK 94 (643)
Q Consensus 74 ~ai~GpsGsGKSTLl~~L~g~ 94 (643)
++++|++|+|||||++.+.+-
T Consensus 8 i~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999991989999999739
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=94.24 E-value=0.0079 Score=32.74 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=20.7
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8099998899988899999896598
Q 006505 71 WEILAIVGPSGAGKSSLLEILAGKL 95 (643)
Q Consensus 71 Ge~~ai~GpsGsGKSTLl~~L~g~~ 95 (643)
-.+++++||+|+||||.+-=|+.++
T Consensus 9 p~vi~lvGptGvGKTTTiAKLA~~~ 33 (211)
T d2qy9a2 9 PFVILMVGVNGVGKTTTIGKLARQF 33 (211)
T ss_dssp TEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 9799998999999899999999999
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=94.19 E-value=0.021 Score=30.15 Aligned_cols=27 Identities=33% Similarity=0.565 Sum_probs=22.9
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 468099998899988899999896598
Q 006505 69 KPWEILAIVGPSGAGKSSLLEILAGKL 95 (643)
Q Consensus 69 ~~Ge~~ai~GpsGsGKSTLl~~L~g~~ 95 (643)
+|...+.++||+|+|||.|.+.|+..+
T Consensus 50 ~p~~~~lf~Gp~GvGKT~lak~la~~l 76 (315)
T d1r6bx3 50 KPVGSFLFAGPTGVGKTEVTVQLSKAL 76 (315)
T ss_dssp SCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 876589997787500699999998633
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.16 E-value=0.0029 Score=35.44 Aligned_cols=23 Identities=39% Similarity=0.511 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998899988899999896598
Q 006505 73 ILAIVGPSGAGKSSLLEILAGKL 95 (643)
Q Consensus 73 ~~ai~GpsGsGKSTLl~~L~g~~ 95 (643)
-++++|++++|||||++.|.|..
T Consensus 2 kI~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.15 E-value=0.018 Score=30.48 Aligned_cols=21 Identities=33% Similarity=0.537 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999889998889999989659
Q 006505 74 LAIVGPSGAGKSSLLEILAGK 94 (643)
Q Consensus 74 ~ai~GpsGsGKSTLl~~L~g~ 94 (643)
++++|++|+|||||++.+.+-
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999991989999999619
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=94.13 E-value=0.016 Score=30.77 Aligned_cols=97 Identities=15% Similarity=0.144 Sum_probs=52.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCH
Q ss_conf 68099998899988899999896598999618999997089031103478982598889999999999999870499989
Q 006505 70 PWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQ 149 (643)
Q Consensus 70 ~Ge~~ai~GpsGsGKSTLl~~L~g~~~~~~G~I~~~g~~~~~~~~r~~~~yV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~ 149 (643)
...+++++||+|+||||.+-=|+..+. .-.+.++.+.-|..-.. -.
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~~----------------~~g~kV~lit~Dt~R~g---a~--------------- 56 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFYK----------------KKGFKVGLVGADVYRPA---AL--------------- 56 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHHH----------------HTTCCEEEEECCCSSHH---HH---------------
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH----------------HCCCCEEEEEEECCCCC---HH---------------
T ss_conf 998999989999998999999999999----------------77993699972023551---56---------------
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCH
Q ss_conf 9999999999999399012231107976787797898999999998409987898199999999
Q 006505 150 AQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDS 213 (643)
Q Consensus 150 ~~~~~~v~~~l~~lgL~~~~~~~~g~~~~~~lSgGerqRvsia~aL~~~p~illlDEPTsgLD~ 213 (643)
++.+.+.+.+|+.-.. ......+ -.-.+=++..+...+-+++|.| |.|..+
T Consensus 57 ----eQL~~~a~~l~v~~~~-----~~~~~~~--~~~~~~a~~~~~~~~~d~IlID--TaGr~~ 107 (211)
T d1j8yf2 57 ----EQLQQLGQQIGVPVYG-----EPGEKDV--VGIAKRGVEKFLSEKMEIIIVD--TAGRHG 107 (211)
T ss_dssp ----HHHHHHHHHHTCCEEC-----CTTCCCH--HHHHHHHHHHHHHTTCSEEEEE--CCCSCC
T ss_pred ----HHHHHHCCCCCCCEEE-----CCCCHHH--HHHHHHHHHHHHCCCCCEEEEE--CCCCCC
T ss_conf ----7898740146842230-----2441024--4789999987402677369985--377676
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.05 E-value=0.016 Score=30.74 Aligned_cols=21 Identities=38% Similarity=0.694 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999889998889999989659
Q 006505 74 LAIVGPSGAGKSSLLEILAGK 94 (643)
Q Consensus 74 ~ai~GpsGsGKSTLl~~L~g~ 94 (643)
++++|++|+|||||++.+.+-
T Consensus 7 i~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999990989999999829
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.03 E-value=0.018 Score=30.44 Aligned_cols=43 Identities=14% Similarity=0.278 Sum_probs=27.4
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCH
Q ss_conf 9987898199999999999999999999997199899998058855
Q 006505 198 DPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGF 243 (643)
Q Consensus 198 ~p~illlDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~ 243 (643)
+.+++++||.- ++....+..+...+.... ....+++++++.+.
T Consensus 101 ~~kviiiDe~d-~~~~~~~~~ll~~~e~~~--~~~~~i~~~~~~~~ 143 (224)
T d1sxjb2 101 KHKIVILDEAD-SMTAGAQQALRRTMELYS--NSTRFAFACNQSNK 143 (224)
T ss_dssp CCEEEEEESGG-GSCHHHHHTTHHHHHHTT--TTEEEEEEESCGGG
T ss_pred CEEEEEEECCC-CCCHHHHHHHHHHCCCCC--CCEEEEECCCCHHH
T ss_conf 35999982443-232157787752011233--33366531474302
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.02 E-value=0.014 Score=31.16 Aligned_cols=21 Identities=43% Similarity=0.616 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999889998889999989659
Q 006505 74 LAIVGPSGAGKSSLLEILAGK 94 (643)
Q Consensus 74 ~ai~GpsGsGKSTLl~~L~g~ 94 (643)
++++|++|+|||||++.+.+-
T Consensus 6 i~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 6 LVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999997998999999999809
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=93.99 E-value=0.033 Score=28.89 Aligned_cols=35 Identities=29% Similarity=0.170 Sum_probs=26.7
Q ss_pred CEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 100104799846809999889998889999989659
Q 006505 59 RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGK 94 (643)
Q Consensus 59 ~iL~~is~~i~~Ge~~ai~GpsGsGKSTLl~~L~g~ 94 (643)
+.+|. ++..-.|.-+.|.|+||+||||+.-.+..+
T Consensus 4 t~~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~~~ 38 (169)
T d1ko7a2 4 TSLHG-VLVDVYGVGVLITGDSGIGKSETALELIKR 38 (169)
T ss_dssp EEEES-EEEEETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEE-EEEEECCEEEEEEECCCCCHHHHHHHHHHC
T ss_conf 04889-999999999999808999999999999984
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=93.97 E-value=0.019 Score=30.33 Aligned_cols=33 Identities=27% Similarity=0.310 Sum_probs=27.6
Q ss_pred CEEEEEECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 047998468099998899988899999896598
Q 006505 63 GVSCKAKPWEILAIVGPSGAGKSSLLEILAGKL 95 (643)
Q Consensus 63 ~is~~i~~Ge~~ai~GpsGsGKSTLl~~L~g~~ 95 (643)
|.=+.+..|+-.+|.|++|+|||||+..++...
T Consensus 35 D~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~ 67 (289)
T d1xpua3 35 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 67 (289)
T ss_dssp HHHSCCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred EECCCCCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 412564578755686799988789999999977
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.89 E-value=0.023 Score=29.80 Aligned_cols=21 Identities=33% Similarity=0.602 Sum_probs=18.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999889998889999989659
Q 006505 74 LAIVGPSGAGKSSLLEILAGK 94 (643)
Q Consensus 74 ~ai~GpsGsGKSTLl~~L~g~ 94 (643)
++++|++|+|||||++-+..-
T Consensus 9 I~vvG~~~vGKSSli~~~~~~ 29 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVTN 29 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999997999999999849
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.82 E-value=0.019 Score=30.34 Aligned_cols=20 Identities=30% Similarity=0.577 Sum_probs=17.9
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99988999888999998965
Q 006505 74 LAIVGPSGAGKSSLLEILAG 93 (643)
Q Consensus 74 ~ai~GpsGsGKSTLl~~L~g 93 (643)
++++|++|+|||||++-+.+
T Consensus 5 v~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999899598999999982
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.76 E-value=0.036 Score=28.60 Aligned_cols=22 Identities=32% Similarity=0.481 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999889998889999989659
Q 006505 73 ILAIVGPSGAGKSSLLEILAGK 94 (643)
Q Consensus 73 ~~ai~GpsGsGKSTLl~~L~g~ 94 (643)
-++++|++|+|||||++-+.+-
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998997899999999719
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=93.76 E-value=0.009 Score=32.39 Aligned_cols=26 Identities=31% Similarity=0.431 Sum_probs=23.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 09999889998889999989659899
Q 006505 72 EILAIVGPSGAGKSSLLEILAGKLTP 97 (643)
Q Consensus 72 e~~ai~GpsGsGKSTLl~~L~g~~~~ 97 (643)
.-+.|.||.|+|||||.+.+++++++
T Consensus 29 h~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 29 GGVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 70899889985299999999873798
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.74 E-value=0.024 Score=29.75 Aligned_cols=23 Identities=35% Similarity=0.640 Sum_probs=20.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99988999888999998965989
Q 006505 74 LAIVGPSGAGKSSLLEILAGKLT 96 (643)
Q Consensus 74 ~ai~GpsGsGKSTLl~~L~g~~~ 96 (643)
++++|++|+|||||++.+.+...
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~~~ 26 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGVED 26 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC--
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99989899399999999818856
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.67 E-value=0.021 Score=30.05 Aligned_cols=21 Identities=43% Similarity=0.662 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999889998889999989659
Q 006505 74 LAIVGPSGAGKSSLLEILAGK 94 (643)
Q Consensus 74 ~ai~GpsGsGKSTLl~~L~g~ 94 (643)
++++|++|+|||||++.+.+-
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999993999999999629
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=93.67 E-value=0.15 Score=24.71 Aligned_cols=161 Identities=11% Similarity=0.072 Sum_probs=74.5
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCH
Q ss_conf 68099998899988899999896598999618999997089031103478982598889999999999999870499989
Q 006505 70 PWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQ 149 (643)
Q Consensus 70 ~Ge~~ai~GpsGsGKSTLl~~L~g~~~~~~G~I~~~g~~~~~~~~r~~~~yV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~ 149 (643)
...+++|.|..|.|||||.+.+...... . ...+...+.+|.-... ++.
T Consensus 43 ~~~~v~I~GmgGiGKTtLA~~v~~~~~~-----------~-~~~~f~~~~Wv~vs~~-~~~------------------- 90 (277)
T d2a5yb3 43 DSFFLFLHGRAGSGKSVIASQALSKSDQ-----------L-IGINYDSIVWLKDSGT-APK------------------- 90 (277)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHCSS-----------T-BTTTBSEEEEEECCCC-STT-------------------
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHH-----------H-HHHCCCEEEEEEECCC-CCH-------------------
T ss_conf 8408999779978889999999985565-----------5-4012764899993687-777-------------------
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCC-CCEEEEECCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999399012231107976787797898999999998409-987898199999999999999999999997
Q 006505 150 AQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHD-PKVLILDEPTSGLDSTSALQIIDMLKVMAE 228 (643)
Q Consensus 150 ~~~~~~v~~~l~~lgL~~~~~~~~g~~~~~~lSgGerqRvsia~aL~~~-p~illlDEPTsgLD~~~~~~i~~~L~~l~~ 228 (643)
..........+..++-.+.. +.....-....+.+..+..+.+.+ +-+++||.-- |. .. ++....
T Consensus 91 ~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~L~~kr~LlVLDDv~---~~-~~------~~~~~~ 155 (277)
T d2a5yb3 91 STFDLFTDILLMLKSEDDLL-----NFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVV---QE-ET------IRWAQE 155 (277)
T ss_dssp HHHHHHHHHHHHHTTTSCCT-----TCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEEC---CH-HH------HHHHHH
T ss_pred HHHHHHHHHHHHHHCCHHHC-----CCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCHHH---HH-HH------HHHHCC
T ss_conf 78999999999872202202-----78632123369999999999844688167525066---77-66------555204
Q ss_pred HCCCEEEEEECCCCHHHHHHCCEEEEEECCEEEEECCHHHHHHHHHHCCCCCCCC
Q ss_conf 1998999980588558986268799981982898539567999998749999999
Q 006505 229 TRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSVSLRMMGLQLPMH 283 (643)
Q Consensus 229 ~~g~tii~~~H~~~~~~~~~~D~i~~l~~G~~~~~G~~~~~~~~f~~~g~~~p~~ 283 (643)
.|.-||+||-+.+. .....+....+.= ..=+.+++.+-|...++..|..
T Consensus 156 -~~srilvTTR~~~v-~~~~~~~~~~~~l----~~L~~~ea~~Lf~~~~~~~~~~ 204 (277)
T d2a5yb3 156 -LRLRCLVTTRDVEI-SNAASQTCEFIEV----TSLEIDECYDFLEAYGMPMPVG 204 (277)
T ss_dssp -TTCEEEEEESBGGG-GGGCCSCEEEEEC----CCCCHHHHHHHHHHTSCCCC--
T ss_pred -CCCEEEEEEEHHHH-HHHCCCCCCEEEC----CCCCHHHHHHHHHHHHCCCCCC
T ss_conf -57559999644899-9863788716877----8899799999999984776674
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.67 E-value=0.02 Score=30.17 Aligned_cols=44 Identities=16% Similarity=0.239 Sum_probs=31.0
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCH
Q ss_conf 09987898199999999999999999999997199899998058855
Q 006505 197 HDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGF 243 (643)
Q Consensus 197 ~~p~illlDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~ 243 (643)
.+.+++++||.-. |.......+.+.+.... ....+|++++++..
T Consensus 130 ~~~~iiiide~d~-l~~~~~~~l~~~~e~~~--~~~~~Il~tn~~~~ 173 (252)
T d1sxje2 130 HRYKCVIINEANS-LTKDAQAALRRTMEKYS--KNIRLIMVCDSMSP 173 (252)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHHST--TTEEEEEEESCSCS
T ss_pred CCCEEEEECCCCC-CCCCCCHHHHCCCCCCC--CCCCCEEEECCCCC
T ss_conf 8724999424333-45431112210022135--66430001021110
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.61 E-value=0.019 Score=30.42 Aligned_cols=21 Identities=38% Similarity=0.419 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999988999888999998965
Q 006505 73 ILAIVGPSGAGKSSLLEILAG 93 (643)
Q Consensus 73 ~~ai~GpsGsGKSTLl~~L~g 93 (643)
-++++|++|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899298999999971
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.59 E-value=0.024 Score=29.72 Aligned_cols=41 Identities=12% Similarity=0.215 Sum_probs=28.2
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 98789819999999999999999999999719989999805885
Q 006505 199 PKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPG 242 (643)
Q Consensus 199 p~illlDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~ 242 (643)
.+++++||.- .+.......+.+.+.... ....++++++++.
T Consensus 100 ~kiiiiDe~d-~~~~~~~~~Ll~~le~~~--~~~~~~~~~~~~~ 140 (227)
T d1sxjc2 100 FKLIILDEAD-AMTNAAQNALRRVIERYT--KNTRFCVLANYAH 140 (227)
T ss_dssp CEEEEETTGG-GSCHHHHHHHHHHHHHTT--TTEEEEEEESCGG
T ss_pred EEEEEEECCC-CCHHHHHHHHHHHHHHCC--CCEEECCCCCCHH
T ss_conf 1899996632-000237899998863112--0023201267087
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.59 E-value=0.034 Score=28.81 Aligned_cols=23 Identities=39% Similarity=0.716 Sum_probs=20.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99988999888999998965989
Q 006505 74 LAIVGPSGAGKSSLLEILAGKLT 96 (643)
Q Consensus 74 ~ai~GpsGsGKSTLl~~L~g~~~ 96 (643)
+.++|.+|+|||||++.+.+...
T Consensus 6 v~lvG~~~vGKTsLi~~~~~~~~ 28 (172)
T d2g3ya1 6 VVLIGEQGVGKSTLANIFAGVHD 28 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHCCCC
T ss_pred EEEECCCCCCHHHHHHHHHHCCC
T ss_conf 99999899299999999972867
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.58 E-value=0.03 Score=29.14 Aligned_cols=35 Identities=23% Similarity=0.277 Sum_probs=23.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 09999889998889999989659899961899999
Q 006505 72 EILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNG 106 (643)
Q Consensus 72 e~~ai~GpsGsGKSTLl~~L~g~~~~~~G~I~~~g 106 (643)
-++.|.|.=|||||||++-+....+...=.|..|.
T Consensus 4 Pv~iitGFLGaGKTTll~~lL~~~~~~riaVI~Ne 38 (222)
T d1nija1 4 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENE 38 (222)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSS
T ss_pred CEEEEEECCCCCHHHHHHHHHHCCCCCCEEEEEEC
T ss_conf 88998648889999999999856789837999736
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.54 E-value=0.019 Score=30.30 Aligned_cols=21 Identities=43% Similarity=0.665 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999889998889999989659
Q 006505 74 LAIVGPSGAGKSSLLEILAGK 94 (643)
Q Consensus 74 ~ai~GpsGsGKSTLl~~L~g~ 94 (643)
++++|+.|+|||||++.+.+-
T Consensus 9 ivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999990989999999619
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=93.53 E-value=0.023 Score=29.83 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=20.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998899988899999896598
Q 006505 74 LAIVGPSGAGKSSLLEILAGKL 95 (643)
Q Consensus 74 ~ai~GpsGsGKSTLl~~L~g~~ 95 (643)
+||+|.+.+|||||++.|+|-.
T Consensus 3 v~lvG~pn~GKStlfn~lt~~~ 24 (319)
T d1wxqa1 3 IGVVGKPNVGKSTFFSAATLVD 24 (319)
T ss_dssp EEEEECTTSSHHHHHHHHHC--
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 7688999998999999997889
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.51 E-value=0.024 Score=29.74 Aligned_cols=21 Identities=43% Similarity=0.708 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999889998889999989659
Q 006505 74 LAIVGPSGAGKSSLLEILAGK 94 (643)
Q Consensus 74 ~ai~GpsGsGKSTLl~~L~g~ 94 (643)
++++|.+|+|||||++-+.+-
T Consensus 5 v~vvG~~~vGKSSLi~~l~~~ 25 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVNK 25 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999991989999999719
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.45 E-value=0.02 Score=30.16 Aligned_cols=21 Identities=24% Similarity=0.604 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999889998889999989659
Q 006505 74 LAIVGPSGAGKSSLLEILAGK 94 (643)
Q Consensus 74 ~ai~GpsGsGKSTLl~~L~g~ 94 (643)
++++|++|+|||||++.+.+-
T Consensus 8 i~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999991989999999729
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=93.44 E-value=0.025 Score=29.65 Aligned_cols=26 Identities=38% Similarity=0.668 Sum_probs=22.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC-CC
Q ss_conf 999988999888999998965989-99
Q 006505 73 ILAIVGPSGAGKSSLLEILAGKLT-PQ 98 (643)
Q Consensus 73 ~~ai~GpsGsGKSTLl~~L~g~~~-~~ 98 (643)
.++++|.-+||||||++.|.|..- |.
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~~lP~ 52 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRDFLPR 52 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSCCCCC
T ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCC
T ss_conf 599981898979999999968997887
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=93.44 E-value=0.013 Score=31.35 Aligned_cols=21 Identities=38% Similarity=0.539 Sum_probs=18.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999889998889999989659
Q 006505 74 LAIVGPSGAGKSSLLEILAGK 94 (643)
Q Consensus 74 ~ai~GpsGsGKSTLl~~L~g~ 94 (643)
++++|++|+|||||++.+.+-
T Consensus 20 I~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 20 ILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp EEEEEETTSSHHHHHHHTCCS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999999889999887338
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.40 E-value=0.021 Score=30.09 Aligned_cols=21 Identities=38% Similarity=0.634 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999889998889999989659
Q 006505 74 LAIVGPSGAGKSSLLEILAGK 94 (643)
Q Consensus 74 ~ai~GpsGsGKSTLl~~L~g~ 94 (643)
++++|++|+|||||++.+.+-
T Consensus 5 i~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999996789999999868
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.34 E-value=0.022 Score=29.92 Aligned_cols=22 Identities=36% Similarity=0.483 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999889998889999989659
Q 006505 73 ILAIVGPSGAGKSSLLEILAGK 94 (643)
Q Consensus 73 ~~ai~GpsGsGKSTLl~~L~g~ 94 (643)
-++++|.+|+|||||++-+.+-
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~ 28 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQS 28 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999999997999999999739
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=93.31 E-value=0.018 Score=30.43 Aligned_cols=23 Identities=26% Similarity=0.527 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998899988899999896598
Q 006505 73 ILAIVGPSGAGKSSLLEILAGKL 95 (643)
Q Consensus 73 ~~ai~GpsGsGKSTLl~~L~g~~ 95 (643)
++.+.||+|.||||+++.++..+
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89967899989999999999998
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.26 E-value=0.027 Score=29.41 Aligned_cols=21 Identities=48% Similarity=0.697 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999889998889999989659
Q 006505 74 LAIVGPSGAGKSSLLEILAGK 94 (643)
Q Consensus 74 ~ai~GpsGsGKSTLl~~L~g~ 94 (643)
++++|..|+|||||++.+.+-
T Consensus 10 i~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 10 ILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998990889999999719
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.26 E-value=0.028 Score=29.34 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999889998889999989659
Q 006505 73 ILAIVGPSGAGKSSLLEILAGK 94 (643)
Q Consensus 73 ~~ai~GpsGsGKSTLl~~L~g~ 94 (643)
-++++|++|+|||||++-+.+.
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998993999999999719
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.24 E-value=0.028 Score=29.31 Aligned_cols=21 Identities=24% Similarity=0.441 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999889998889999989659
Q 006505 74 LAIVGPSGAGKSSLLEILAGK 94 (643)
Q Consensus 74 ~ai~GpsGsGKSTLl~~L~g~ 94 (643)
++++|++|+|||||++-+.+-
T Consensus 5 v~liG~~~vGKTsLl~~~~~~ 25 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCAG 25 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999992989999999739
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=93.23 E-value=0.029 Score=29.23 Aligned_cols=28 Identities=25% Similarity=0.438 Sum_probs=21.9
Q ss_pred EEEEECCCCCCHHHHHHHHH-CCCCCCCC
Q ss_conf 99998899988899999896-59899961
Q 006505 73 ILAIVGPSGAGKSSLLEILA-GKLTPQSG 100 (643)
Q Consensus 73 ~~ai~GpsGsGKSTLl~~L~-g~~~~~~G 100 (643)
-+.++|++|+|||||++-+. +...|+-|
T Consensus 8 KilllG~~~vGKTsll~~~~~~~~~pTiG 36 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMRILHVVLTSG 36 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCC
T ss_conf 79999899998899999895098278888
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.23 E-value=0.025 Score=29.58 Aligned_cols=23 Identities=48% Similarity=0.667 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998899988899999896598
Q 006505 73 ILAIVGPSGAGKSSLLEILAGKL 95 (643)
Q Consensus 73 ~~ai~GpsGsGKSTLl~~L~g~~ 95 (643)
.++++|.-.||||||+++|.|..
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 69997689897999999996898
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=93.17 E-value=0.038 Score=28.48 Aligned_cols=30 Identities=10% Similarity=0.284 Sum_probs=23.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 0999988999888999998965989996189999
Q 006505 72 EILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVN 105 (643)
Q Consensus 72 e~~ai~GpsGsGKSTLl~~L~g~~~~~~G~I~~~ 105 (643)
.++||.|+-||||||..+.|...+ |-..++
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e~~----g~~~i~ 31 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMSNY----SAVKYQ 31 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS----CEEECC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC----CCEEEC
T ss_conf 899997999988999999999868----985980
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.16 E-value=0.029 Score=29.25 Aligned_cols=21 Identities=43% Similarity=0.653 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999889998889999989659
Q 006505 74 LAIVGPSGAGKSSLLEILAGK 94 (643)
Q Consensus 74 ~ai~GpsGsGKSTLl~~L~g~ 94 (643)
++++|.+|+|||||++.+.+.
T Consensus 7 ivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999994989999999729
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=93.11 E-value=0.03 Score=29.13 Aligned_cols=40 Identities=23% Similarity=0.206 Sum_probs=30.9
Q ss_pred EEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE-ECCCCC
Q ss_conf 9846809999889998889999989659899961899-999708
Q 006505 67 KAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTF-VNGSPI 109 (643)
Q Consensus 67 ~i~~Ge~~ai~GpsGsGKSTLl~~L~g~~~~~~G~I~-~~g~~~ 109 (643)
.++++..+.+.||+|+|||++.+.|++... |.+. +|+.+.
T Consensus 150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~---~~~i~in~s~~ 190 (362)
T d1svma_ 150 NIPKKRYWLFKGPIDSGKTTLAAALLELCG---GKALNVNLPLD 190 (362)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHC---CEEECCSSCTT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCC---CCEEEEECCCH
T ss_conf 899767699989999888999999999859---97899977420
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.08 E-value=0.034 Score=28.79 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=22.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 0999988999888999998965989
Q 006505 72 EILAIVGPSGAGKSSLLEILAGKLT 96 (643)
Q Consensus 72 e~~ai~GpsGsGKSTLl~~L~g~~~ 96 (643)
.+++|=|+-||||||+++.|+..+.
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 1999989988859999999999873
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=93.00 E-value=0.026 Score=29.48 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999889998889999989659
Q 006505 73 ILAIVGPSGAGKSSLLEILAGK 94 (643)
Q Consensus 73 ~~ai~GpsGsGKSTLl~~L~g~ 94 (643)
-+||+|.+.+|||||+++|++-
T Consensus 12 kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 7999789999899999999778
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.90 E-value=0.028 Score=29.33 Aligned_cols=22 Identities=36% Similarity=0.516 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999889998889999989659
Q 006505 73 ILAIVGPSGAGKSSLLEILAGK 94 (643)
Q Consensus 73 ~~ai~GpsGsGKSTLl~~L~g~ 94 (643)
-+.++|++|+|||||++.+.+-
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998993889999999719
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.87 E-value=0.033 Score=28.84 Aligned_cols=22 Identities=27% Similarity=0.382 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999889998889999989659
Q 006505 73 ILAIVGPSGAGKSSLLEILAGK 94 (643)
Q Consensus 73 ~~ai~GpsGsGKSTLl~~L~g~ 94 (643)
-++++|.+|+|||||++.+.+.
T Consensus 7 KivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999997999999999749
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.85 E-value=0.035 Score=28.75 Aligned_cols=21 Identities=29% Similarity=0.571 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999889998889999989659
Q 006505 74 LAIVGPSGAGKSSLLEILAGK 94 (643)
Q Consensus 74 ~ai~GpsGsGKSTLl~~L~g~ 94 (643)
++++|.+|+|||||++-+..-
T Consensus 7 i~lvG~~~vGKTsli~rl~~~ 27 (167)
T d1z0ja1 7 VCLLGDTGVGKSSIMWRFVED 27 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998994999999999739
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=92.82 E-value=0.048 Score=27.87 Aligned_cols=23 Identities=35% Similarity=0.583 Sum_probs=20.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99988999888999998965989
Q 006505 74 LAIVGPSGAGKSSLLEILAGKLT 96 (643)
Q Consensus 74 ~ai~GpsGsGKSTLl~~L~g~~~ 96 (643)
+|++|.-.+|||||++.|.|...
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~~ 30 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVWT 30 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCCC
T ss_pred EEEEECCCCCHHHHHHHHHHHHH
T ss_conf 99993458849999999970344
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=92.79 E-value=0.02 Score=30.17 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999988999888999998965989
Q 006505 73 ILAIVGPSGAGKSSLLEILAGKLT 96 (643)
Q Consensus 73 ~~ai~GpsGsGKSTLl~~L~g~~~ 96 (643)
-+.++|++|+|||||++.+.+-..
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~~~ 37 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLGQS 37 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999999999878999999844888
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=92.79 E-value=0.033 Score=28.89 Aligned_cols=21 Identities=43% Similarity=0.654 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999988999888999998965
Q 006505 73 ILAIVGPSGAGKSSLLEILAG 93 (643)
Q Consensus 73 ~~ai~GpsGsGKSTLl~~L~g 93 (643)
-++|+|+.|+|||||...|..
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~ 24 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLY 24 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999994889809999999999
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.68 E-value=0.031 Score=29.03 Aligned_cols=21 Identities=29% Similarity=0.466 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999889998889999989659
Q 006505 74 LAIVGPSGAGKSSLLEILAGK 94 (643)
Q Consensus 74 ~ai~GpsGsGKSTLl~~L~g~ 94 (643)
++++|.+|+|||||++.+.+-
T Consensus 3 v~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 3 LVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998990989999999849
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=92.67 E-value=0.072 Score=26.76 Aligned_cols=32 Identities=22% Similarity=0.283 Sum_probs=24.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 99998899988899999896598999618999
Q 006505 73 ILAIVGPSGAGKSSLLEILAGKLTPQSGSTFV 104 (643)
Q Consensus 73 ~~ai~GpsGsGKSTLl~~L~g~~~~~~G~I~~ 104 (643)
.+.|=|+-|+||||+++.|+..+....+.+.+
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~~~~v~~~ 39 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASGGSPTLYF 39 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGCSSCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCEEEE
T ss_conf 99998886678999999999986569976998
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.65 E-value=0.039 Score=28.40 Aligned_cols=28 Identities=25% Similarity=0.475 Sum_probs=21.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC--CCCCCCC
Q ss_conf 999988999888999998965--9899961
Q 006505 73 ILAIVGPSGAGKSSLLEILAG--KLTPQSG 100 (643)
Q Consensus 73 ~~ai~GpsGsGKSTLl~~L~g--~~~~~~G 100 (643)
-+.++|.+|+|||||++-+.- -..|+.|
T Consensus 4 KivllG~~~vGKTsll~r~~f~~~~~pTiG 33 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMRIIHGQDPTKG 33 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCEEE
T ss_conf 999998999998999998846898887241
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.62 E-value=0.038 Score=28.46 Aligned_cols=21 Identities=24% Similarity=0.409 Sum_probs=18.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999889998889999989659
Q 006505 74 LAIVGPSGAGKSSLLEILAGK 94 (643)
Q Consensus 74 ~ai~GpsGsGKSTLl~~L~g~ 94 (643)
++++|.+|+|||||++.+.+-
T Consensus 6 ivlvG~~~vGKTsLi~r~~~~ 26 (167)
T d1z08a1 6 VVLLGEGCVGKTSLVLRYCEN 26 (167)
T ss_dssp EEEECCTTSCHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999993989999999829
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=92.59 E-value=0.061 Score=27.21 Aligned_cols=34 Identities=18% Similarity=0.271 Sum_probs=24.8
Q ss_pred EECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 01047998468099998899988899999896598
Q 006505 61 LDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKL 95 (643)
Q Consensus 61 L~~is~~i~~Ge~~ai~GpsGsGKSTLl~~L~g~~ 95 (643)
.+-+....++| ++.+.||+|+|||.|.+.|++..
T Consensus 114 ~~~~~~~~~~g-~~l~~G~pG~GKT~la~ala~~~ 147 (321)
T d1w44a_ 114 AEFGGHRYASG-MVIVTGKGNSGKTPLVHALGEAL 147 (321)
T ss_dssp EEETTEEEESE-EEEEECSSSSCHHHHHHHHHHHH
T ss_pred HHHHHCCCCCC-EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 98861436886-38887799850889999999986
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.58 E-value=0.033 Score=28.90 Aligned_cols=21 Identities=38% Similarity=0.686 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999889998889999989659
Q 006505 74 LAIVGPSGAGKSSLLEILAGK 94 (643)
Q Consensus 74 ~ai~GpsGsGKSTLl~~L~g~ 94 (643)
++++|..|+|||||++.+.+-
T Consensus 8 I~lvG~~~vGKTsll~~~~~~ 28 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIEK 28 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999990999999999709
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.50 E-value=0.041 Score=28.28 Aligned_cols=22 Identities=45% Similarity=0.597 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999889998889999989659
Q 006505 73 ILAIVGPSGAGKSSLLEILAGK 94 (643)
Q Consensus 73 ~~ai~GpsGsGKSTLl~~L~g~ 94 (643)
-+.++|++|+|||+|++-+.+-
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998997899999999739
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.44 E-value=0.042 Score=28.20 Aligned_cols=21 Identities=38% Similarity=0.499 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999988999888999998965
Q 006505 73 ILAIVGPSGAGKSSLLEILAG 93 (643)
Q Consensus 73 ~~ai~GpsGsGKSTLl~~L~g 93 (643)
-+.++|.+|+|||||++.+.+
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899598999999970
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.40 E-value=0.036 Score=28.60 Aligned_cols=22 Identities=36% Similarity=0.487 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999889998889999989659
Q 006505 73 ILAIVGPSGAGKSSLLEILAGK 94 (643)
Q Consensus 73 ~~ai~GpsGsGKSTLl~~L~g~ 94 (643)
-++++|.+|+|||||++-+.+-
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~~ 29 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQS 29 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999997996989999999739
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.38 E-value=0.042 Score=28.19 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999889998889999989659
Q 006505 73 ILAIVGPSGAGKSSLLEILAGK 94 (643)
Q Consensus 73 ~~ai~GpsGsGKSTLl~~L~g~ 94 (643)
-++++|.+|+|||||++-+.+-
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=92.36 E-value=0.041 Score=28.27 Aligned_cols=36 Identities=33% Similarity=0.401 Sum_probs=24.3
Q ss_pred EEEEEECCCCCCHHHHHHHHH-CCCCCCCCEEEECCC
Q ss_conf 099998899988899999896-598999618999997
Q 006505 72 EILAIVGPSGAGKSSLLEILA-GKLTPQSGSTFVNGS 107 (643)
Q Consensus 72 e~~ai~GpsGsGKSTLl~~L~-g~~~~~~G~I~~~g~ 107 (643)
.-+.|+|++|||||++++.+. .....+.+-|.+|.+
T Consensus 51 ~H~~I~G~tGsGKT~~l~~li~~~~~~g~~~iiiD~k 87 (433)
T d1e9ra_ 51 RHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPN 87 (433)
T ss_dssp GCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEET
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 6589990799968999999999998479988999687
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.32 E-value=0.024 Score=29.70 Aligned_cols=21 Identities=33% Similarity=0.591 Sum_probs=18.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999889998889999989659
Q 006505 74 LAIVGPSGAGKSSLLEILAGK 94 (643)
Q Consensus 74 ~ai~GpsGsGKSTLl~~L~g~ 94 (643)
++++|.+|+|||||++.+.+-
T Consensus 9 i~vvG~~~vGKTsLi~~l~~~ 29 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSED 29 (173)
T ss_dssp EEEECCCCC------------
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999994999999999709
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.32 E-value=0.044 Score=28.12 Aligned_cols=20 Identities=40% Similarity=0.649 Sum_probs=17.9
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99988999888999998965
Q 006505 74 LAIVGPSGAGKSSLLEILAG 93 (643)
Q Consensus 74 ~ai~GpsGsGKSTLl~~L~g 93 (643)
++++|++|+|||||++.+.+
T Consensus 9 i~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999299999999971
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=92.23 E-value=0.043 Score=28.15 Aligned_cols=21 Identities=24% Similarity=0.289 Sum_probs=18.6
Q ss_pred EEEEEECCCCCCHHHHHHHHH
Q ss_conf 099998899988899999896
Q 006505 72 EILAIVGPSGAGKSSLLEILA 92 (643)
Q Consensus 72 e~~ai~GpsGsGKSTLl~~L~ 92 (643)
+-++|+|..|||||||...|.
T Consensus 7 Rni~i~gh~~~GKTtL~e~ll 27 (276)
T d2bv3a2 7 RNIGIAAHIDAGKTTTTERIL 27 (276)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHH
T ss_conf 299999589899899999999
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.20 E-value=0.026 Score=29.51 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999889998889999989659
Q 006505 73 ILAIVGPSGAGKSSLLEILAGK 94 (643)
Q Consensus 73 ~~ai~GpsGsGKSTLl~~L~g~ 94 (643)
-++++|++|+|||||++.+.+-
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC--
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990889999999849
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.19 E-value=0.046 Score=27.96 Aligned_cols=22 Identities=36% Similarity=0.459 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999889998889999989659
Q 006505 73 ILAIVGPSGAGKSSLLEILAGK 94 (643)
Q Consensus 73 ~~ai~GpsGsGKSTLl~~L~g~ 94 (643)
-++++|.+|+|||||++-+.+-
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994989999999859
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=92.12 E-value=0.048 Score=27.88 Aligned_cols=21 Identities=33% Similarity=0.434 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999988999888999998965
Q 006505 73 ILAIVGPSGAGKSSLLEILAG 93 (643)
Q Consensus 73 ~~ai~GpsGsGKSTLl~~L~g 93 (643)
-++++|.+|+|||||++-+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899588999999972
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.01 E-value=0.048 Score=27.85 Aligned_cols=21 Identities=33% Similarity=0.491 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999889998889999989659
Q 006505 74 LAIVGPSGAGKSSLLEILAGK 94 (643)
Q Consensus 74 ~ai~GpsGsGKSTLl~~L~g~ 94 (643)
++++|.+|+|||||++.+..-
T Consensus 12 i~lvG~~~vGKTsLi~r~~~~ 32 (185)
T d2atxa1 12 CVVVGDGAVGKTCLLMSYAND 32 (185)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999998999999999649
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.87 E-value=0.042 Score=28.21 Aligned_cols=29 Identities=21% Similarity=0.343 Sum_probs=23.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf 99998899988899999896598999618
Q 006505 73 ILAIVGPSGAGKSSLLEILAGKLTPQSGS 101 (643)
Q Consensus 73 ~~ai~GpsGsGKSTLl~~L~g~~~~~~G~ 101 (643)
-+.++|.+|+|||||++-+..-.-|+.|-
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~~t~~~ 32 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHEAGTGI 32 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCSE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCE
T ss_conf 99999999988899999884089797247
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=91.64 E-value=0.059 Score=27.28 Aligned_cols=23 Identities=35% Similarity=0.404 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998899988899999896598
Q 006505 73 ILAIVGPSGAGKSSLLEILAGKL 95 (643)
Q Consensus 73 ~~ai~GpsGsGKSTLl~~L~g~~ 95 (643)
-+||+|-+.+|||||++.|++-.
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~~ 26 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKAG 26 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 48888999998899999997799
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.63 E-value=0.049 Score=27.78 Aligned_cols=22 Identities=27% Similarity=0.382 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999889998889999989659
Q 006505 73 ILAIVGPSGAGKSSLLEILAGK 94 (643)
Q Consensus 73 ~~ai~GpsGsGKSTLl~~L~g~ 94 (643)
-++++|++|+|||||++.+.+-
T Consensus 5 KvvllG~~~vGKTSli~r~~~~ 26 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTTN 26 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999996999999999719
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.47 E-value=0.075 Score=26.66 Aligned_cols=32 Identities=19% Similarity=0.266 Sum_probs=26.2
Q ss_pred CEEEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 04799846809999889998889999989659
Q 006505 63 GVSCKAKPWEILAIVGPSGAGKSSLLEILAGK 94 (643)
Q Consensus 63 ~is~~i~~Ge~~ai~GpsGsGKSTLl~~L~g~ 94 (643)
|.=..+..|+-.+|.|++|+|||||+..++..
T Consensus 60 D~l~pigkGQr~~If~~~g~GKt~l~~~i~~~ 91 (276)
T d2jdid3 60 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 91 (276)
T ss_dssp HHHSCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred EEECCCCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 10256367887776679998989999999998
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=91.39 E-value=0.069 Score=26.87 Aligned_cols=49 Identities=10% Similarity=0.196 Sum_probs=37.1
Q ss_pred HHCCCCEEEEECCCCC-CCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHH
Q ss_conf 8409987898199999-9999999999999999971998999980588558
Q 006505 195 VIHDPKVLILDEPTSG-LDSTSALQIIDMLKVMAETRGRTVILSIHQPGFR 244 (643)
Q Consensus 195 L~~~p~illlDEPTsg-LD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~ 244 (643)
.+...+++++|+--.= -+...+..+..++..... .|+.+|+++..+..+
T Consensus 94 ~~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~-~~~~iiits~~~p~~ 143 (213)
T d1l8qa2 94 MYKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYL-LEKQIILASDRHPQK 143 (213)
T ss_dssp HHHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHH-TTCEEEEEESSCGGG
T ss_pred HHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHH-CCCEEEEECCCCCHH
T ss_conf 87621301011265505865778899999998763-166389954875100
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=91.30 E-value=0.08 Score=26.46 Aligned_cols=27 Identities=37% Similarity=0.714 Sum_probs=23.0
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 468099998899988899999896598
Q 006505 69 KPWEILAIVGPSGAGKSSLLEILAGKL 95 (643)
Q Consensus 69 ~~Ge~~ai~GpsGsGKSTLl~~L~g~~ 95 (643)
+|.....+.||+|+|||.+.+.|+..+
T Consensus 51 kp~~~~lf~Gp~G~GKt~lak~la~~l 77 (315)
T d1qvra3 51 RPIGSFLFLGPTGVGKTELAKTLAATL 77 (315)
T ss_dssp SCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 876699997888624899999999983
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=91.11 E-value=0.071 Score=26.80 Aligned_cols=21 Identities=24% Similarity=0.336 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999988999888999998965
Q 006505 73 ILAIVGPSGAGKSSLLEILAG 93 (643)
Q Consensus 73 ~~ai~GpsGsGKSTLl~~L~g 93 (643)
-++++|..++|||||++.|..
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHH
T ss_conf 999994789849999999999
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.09 E-value=0.071 Score=26.79 Aligned_cols=21 Identities=33% Similarity=0.558 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999889998889999989659
Q 006505 74 LAIVGPSGAGKSSLLEILAGK 94 (643)
Q Consensus 74 ~ai~GpsGsGKSTLl~~L~g~ 94 (643)
++++|.+|+|||+|++-+..-
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 6 LVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999998998999999999709
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=90.86 E-value=0.065 Score=27.03 Aligned_cols=36 Identities=19% Similarity=0.331 Sum_probs=26.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCC
Q ss_conf 999988999888999998965989996189999970
Q 006505 73 ILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSP 108 (643)
Q Consensus 73 ~~ai~GpsGsGKSTLl~~L~g~~~~~~G~I~~~g~~ 108 (643)
.+.|=|+-|+||||+++.|+..+......+.+-..|
T Consensus 7 rI~IEG~iGsGKSTl~~~L~~~l~~~g~~v~~~~EP 42 (331)
T d1osna_ 7 RIYLDGAYGIGKTTAAEEFLHHFAITPNRILLIGEP 42 (331)
T ss_dssp EEEEEESSSSCTTHHHHHHHHTTTTSGGGEEEECCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 999988877889999999999873468856997176
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.85 E-value=0.073 Score=26.73 Aligned_cols=21 Identities=38% Similarity=0.668 Sum_probs=17.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999988999888999998965
Q 006505 73 ILAIVGPSGAGKSSLLEILAG 93 (643)
Q Consensus 73 ~~ai~GpsGsGKSTLl~~L~g 93 (643)
-+.++|.+|+|||+|++-+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999598999999972
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=90.39 E-value=0.083 Score=26.39 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999988999888999998965989
Q 006505 73 ILAIVGPSGAGKSSLLEILAGKLT 96 (643)
Q Consensus 73 ~~ai~GpsGsGKSTLl~~L~g~~~ 96 (643)
.+.|=|+-|+||||+++.|+....
T Consensus 6 rI~IEG~iGsGKTTl~~~La~~l~ 29 (329)
T d1e2ka_ 6 RVYIDGPHGMGKTTTTQLLVALGS 29 (329)
T ss_dssp EEEECSCTTSSHHHHHHHHTC---
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999989867789999999999817
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=90.25 E-value=0.11 Score=25.69 Aligned_cols=27 Identities=30% Similarity=0.600 Sum_probs=21.8
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8468099998899988899999896598
Q 006505 68 AKPWEILAIVGPSGAGKSSLLEILAGKL 95 (643)
Q Consensus 68 i~~Ge~~ai~GpsGsGKSTLl~~L~g~~ 95 (643)
.+++. +.++||+|+|||-|.+.|+...
T Consensus 66 ~p~~n-iLfiGPTGvGKTElAk~LA~~~ 92 (364)
T d1um8a_ 66 LSKSN-ILLIGPTGSGKTLMAQTLAKHL 92 (364)
T ss_dssp CCCCC-EEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCCC-EEEECCCCCCHHHHHHHHHHHC
T ss_conf 78753-2441899863789999998644
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=90.17 E-value=0.085 Score=26.32 Aligned_cols=20 Identities=30% Similarity=0.514 Sum_probs=17.6
Q ss_pred ECCEEEEEECCCCCCHHHHH
Q ss_conf 46809999889998889999
Q 006505 69 KPWEILAIVGPSGAGKSSLL 88 (643)
Q Consensus 69 ~~Ge~~ai~GpsGsGKSTLl 88 (643)
+.|++..+.|.||+|||||-
T Consensus 12 ~~~~~alfFGLSGTGKTTLs 31 (313)
T d2olra1 12 EKGDVAVFFGLSGTGKTTLS 31 (313)
T ss_dssp TTSCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCCCCCE
T ss_conf 88988999704779856023
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=89.82 E-value=0.12 Score=25.34 Aligned_cols=111 Identities=23% Similarity=0.319 Sum_probs=57.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHH
Q ss_conf 99998899988899999896598999618999997089031103478982598889999999999999870499989999
Q 006505 73 ILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQL 152 (643)
Q Consensus 73 ~~ai~GpsGsGKSTLl~~L~g~~~~~~G~I~~~g~~~~~~~~r~~~~yV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~ 152 (643)
-+.|+||+|.|||++..-++.+... | . . +...+...-|...-..+..+.+ .+.+.
T Consensus 41 n~lLVG~~GvGKTalv~~la~ri~~--~------~-v-p~~l~~~~i~~l~~~~liag~~---------------~~g~~ 95 (268)
T d1r6bx2 41 NPLLVGESGVGKTAIAEGLAWRIVQ--G------D-V-PEVMADCTIYSLDIGSLLAGTK---------------YRGDF 95 (268)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHH--T------C-S-CGGGTTCEEEECCCC---CCCC---------------CSSCH
T ss_pred CCEEECCCCCCHHHHHHHHHHHHHH--C------C-C-CCCCCCCEEEEEEECHHHCCCC---------------CCHHH
T ss_conf 9679888988677999999999981--7------8-4-5000354127864056750676---------------30058
Q ss_pred HHHHHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCC-CCEEEEECCCCCCC----HHHHHHHHHHHHHHH
Q ss_conf 9999999999399012231107976787797898999999998409-98789819999999----999999999999999
Q 006505 153 RARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHD-PKVLILDEPTSGLD----STSALQIIDMLKVMA 227 (643)
Q Consensus 153 ~~~v~~~l~~lgL~~~~~~~~g~~~~~~lSgGerqRvsia~aL~~~-p~illlDEPTsgLD----~~~~~~i~~~L~~l~ 227 (643)
++++..+++.+ ... .-|++.||..+=+. +.+...+...|+-.-
T Consensus 96 e~r~~~i~~~~--------------------------------~~~~~iIlfiDeih~l~~~g~~~g~~~d~a~~Lkp~L 143 (268)
T d1r6bx2 96 EKRFKALLKQL--------------------------------EQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL 143 (268)
T ss_dssp HHHHHHHHHHH--------------------------------SSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCS
T ss_pred HHHHHHHHHHH--------------------------------HCCCCCEEEECCHHHHHCCCCCCCCCCCHHHHHHHHH
T ss_conf 99999999986--------------------------------1267846884336988627777886411798764887
Q ss_pred HHCCCEEEEEECC
Q ss_conf 7199899998058
Q 006505 228 ETRGRTVILSIHQ 240 (643)
Q Consensus 228 ~~~g~tii~~~H~ 240 (643)
......+|.++..
T Consensus 144 ~rg~i~vIgatT~ 156 (268)
T d1r6bx2 144 SSGKIRVIGSTTY 156 (268)
T ss_dssp SSCCCEEEEEECH
T ss_pred HCCCCEEEEECCH
T ss_conf 4798759995799
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=89.72 E-value=0.23 Score=23.61 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=17.7
Q ss_pred CCEEEEEECCCCCCHHHHHHH
Q ss_conf 680999988999888999998
Q 006505 70 PWEILAIVGPSGAGKSSLLEI 90 (643)
Q Consensus 70 ~Ge~~ai~GpsGsGKSTLl~~ 90 (643)
.+.++.|.||.|+||||++..
T Consensus 162 ~~~~~vI~G~pGTGKTt~i~~ 182 (359)
T d1w36d1 162 TRRISVISGGPGTGKTTTVAK 182 (359)
T ss_dssp TBSEEEEECCTTSTHHHHHHH
T ss_pred CCCEEEEECCCCCCCEEHHHH
T ss_conf 088599976898875216999
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.58 E-value=0.11 Score=25.67 Aligned_cols=28 Identities=25% Similarity=0.444 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC---CCCCCC
Q ss_conf 9999889998889999989659---899961
Q 006505 73 ILAIVGPSGAGKSSLLEILAGK---LTPQSG 100 (643)
Q Consensus 73 ~~ai~GpsGsGKSTLl~~L~g~---~~~~~G 100 (643)
-+.++|.+|+|||||++-+..- ..|+-|
T Consensus 4 Kiv~lG~~~vGKTsll~r~~~~~~~~~pTiG 34 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMRIIHGSGVPTTG 34 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTSSCCCCCS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
T ss_conf 9999999999889999999679999981662
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=89.57 E-value=0.085 Score=26.30 Aligned_cols=19 Identities=32% Similarity=0.522 Sum_probs=16.9
Q ss_pred CCEEEEEECCCCCCHHHHH
Q ss_conf 6809999889998889999
Q 006505 70 PWEILAIVGPSGAGKSSLL 88 (643)
Q Consensus 70 ~Ge~~ai~GpsGsGKSTLl 88 (643)
.|++..+.|.||.|||||-
T Consensus 13 ~~~valffGLSGTGKTTLs 31 (318)
T d1j3ba1 13 EGDVAVFFGLSGTGKTTLS 31 (318)
T ss_dssp TCCEEEEEECTTSCHHHHT
T ss_pred CCCEEEEECCCCCCCCCCC
T ss_conf 9988999736879814221
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=88.81 E-value=0.25 Score=23.35 Aligned_cols=28 Identities=29% Similarity=0.512 Sum_probs=23.1
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4680999988999888999998965989
Q 006505 69 KPWEILAIVGPSGAGKSSLLEILAGKLT 96 (643)
Q Consensus 69 ~~Ge~~ai~GpsGsGKSTLl~~L~g~~~ 96 (643)
+|.=-++|+|.-.+|||||++.|.|...
T Consensus 6 ~p~ini~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 6 QPEVNIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHSCCC
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 9970899997248869999999970412
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=88.69 E-value=0.16 Score=24.58 Aligned_cols=53 Identities=21% Similarity=0.207 Sum_probs=34.0
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEE
Q ss_conf 98789819999999999999999999999719989999805885589862687999
Q 006505 199 PKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILM 254 (643)
Q Consensus 199 p~illlDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~~~~~~D~i~~ 254 (643)
.+++++||.- .|+..++..+.+.+.+-. .+..+++++++++.-.-.+-.|...
T Consensus 116 ~kviiIde~d-~l~~~~q~~Llk~lE~~~--~~~~~il~tn~~~~i~~~i~SRc~~ 168 (239)
T d1njfa_ 116 FKVYLIDEVH-MLSRHSFNALLKTLEEPP--EHVKFLLATTDPQKLPVTILSRCLQ 168 (239)
T ss_dssp SEEEEEETGG-GSCHHHHHHHHHHHHSCC--TTEEEEEEESCGGGSCHHHHTTSEE
T ss_pred CEEEEEECCC-CCCHHHHHHHHHHHHCCC--CCEEEEEECCCCCCCCHHHHHHHCC
T ss_conf 8799997811-089999999999985689--8869999738856367657612102
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=88.62 E-value=0.1 Score=25.85 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=17.2
Q ss_pred CCEEECEEEEEECCEEEEEECCCCCCHHHHH
Q ss_conf 2100104799846809999889998889999
Q 006505 58 RRVLDGVSCKAKPWEILAIVGPSGAGKSSLL 88 (643)
Q Consensus 58 ~~iL~~is~~i~~Ge~~ai~GpsGsGKSTLl 88 (643)
+.++++. .| -+.|.|+.||||||.+
T Consensus 17 ~~~v~~~-----~g-~~lV~g~aGSGKTt~l 41 (318)
T d1pjra1 17 QEAVRTT-----EG-PLLIMAGAGSGKTRVL 41 (318)
T ss_dssp HHHHHCC-----SS-CEEEEECTTSCHHHHH
T ss_pred HHHHHCC-----CC-CEEEEECCCCCHHHHH
T ss_conf 9998299-----99-9899952986689999
|
| >d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=88.58 E-value=0.13 Score=25.12 Aligned_cols=20 Identities=35% Similarity=0.552 Sum_probs=17.6
Q ss_pred ECCEEEEEECCCCCCHHHHH
Q ss_conf 46809999889998889999
Q 006505 69 KPWEILAIVGPSGAGKSSLL 88 (643)
Q Consensus 69 ~~Ge~~ai~GpsGsGKSTLl 88 (643)
+.|++..+.|-||.|||||-
T Consensus 12 ~~gd~alfFGLSGTGKTTLs 31 (323)
T d1ii2a1 12 KQGDVTVFFGLSGTGKTTLS 31 (323)
T ss_dssp TTCCEEEEECCTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCCCCCE
T ss_conf 88987999736778812051
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=88.38 E-value=0.18 Score=24.35 Aligned_cols=53 Identities=13% Similarity=0.197 Sum_probs=33.2
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHH-HCCEEEE
Q ss_conf 99878981999999999999999999999971998999980588558986-2687999
Q 006505 198 DPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVK-MFNSILM 254 (643)
Q Consensus 198 ~p~illlDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~~~~-~~D~i~~ 254 (643)
+.+++++||. ..+...++..+.+++.+-. .+..+|+++++++. +.. +-.|...
T Consensus 108 ~~kviIide~-d~l~~~a~n~Llk~lEep~--~~~~fIl~t~~~~~-ll~tI~SRc~~ 161 (207)
T d1a5ta2 108 GAKVVWVTDA-ALLTDAAANALLKTLEEPP--AETWFFLATREPER-LLATLRSRCRL 161 (207)
T ss_dssp SCEEEEESCG-GGBCHHHHHHHHHHHTSCC--TTEEEEEEESCGGG-SCHHHHTTSEE
T ss_pred CCCEEEECHH-HHHHHHHHHHHHHHHHHHC--CCCEEEEEECCHHH-HHHHHCCEEEE
T ss_conf 6404773134-4200001499999998501--11104553068655-10320021578
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=88.19 E-value=0.14 Score=24.93 Aligned_cols=16 Identities=19% Similarity=0.480 Sum_probs=13.4
Q ss_pred EEEEECCCCCCHHHHH
Q ss_conf 9999889998889999
Q 006505 73 ILAIVGPSGAGKSSLL 88 (643)
Q Consensus 73 ~~ai~GpsGsGKSTLl 88 (643)
-+.|.|+.||||||.+
T Consensus 16 ~~lI~g~aGTGKTt~l 31 (306)
T d1uaaa1 16 PCLVLAGAGSGKTRVI 31 (306)
T ss_dssp EEEECCCTTSCHHHHH
T ss_pred CEEEEEECCCCHHHHH
T ss_conf 9899962884389999
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=87.46 E-value=0.2 Score=23.95 Aligned_cols=32 Identities=13% Similarity=0.026 Sum_probs=25.4
Q ss_pred CEEEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 04799846809999889998889999989659
Q 006505 63 GVSCKAKPWEILAIVGPSGAGKSSLLEILAGK 94 (643)
Q Consensus 63 ~is~~i~~Ge~~ai~GpsGsGKSTLl~~L~g~ 94 (643)
|.=+.+.+|+-.+|.|++|+|||+|+..+.-.
T Consensus 59 D~l~pig~GQr~~Ifg~~g~GKt~l~~~~~~~ 90 (276)
T d1fx0a3 59 DAMIPVGRGQRELIIGDRQTGKTAVATDTILN 90 (276)
T ss_dssp TTTSCCBTTCBCBEEESSSSSHHHHHHHHHHT
T ss_pred ECCCCCCCCCEEEECCCCCCCHHHHHHHHHHH
T ss_conf 50145467766760067788857999997765
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=87.38 E-value=0.31 Score=22.82 Aligned_cols=31 Identities=32% Similarity=0.363 Sum_probs=24.9
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 6809999889998889999989659899961
Q 006505 70 PWEILAIVGPSGAGKSSLLEILAGKLTPQSG 100 (643)
Q Consensus 70 ~Ge~~ai~GpsGsGKSTLl~~L~g~~~~~~G 100 (643)
.+--++++|-+-+|||||+|.|.|......|
T Consensus 111 ~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~ 141 (273)
T d1puja_ 111 RAIRALIIGIPNVGKSTLINRLAKKNIAKTG 141 (273)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCCC---
T ss_pred CCEEEEEEECCCCCHHHHHHHHHCCCEEEEC
T ss_conf 7527899866754435554254266158878
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=87.30 E-value=0.28 Score=23.07 Aligned_cols=31 Identities=23% Similarity=0.386 Sum_probs=26.4
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 7998468099998899988899999896598
Q 006505 65 SCKAKPWEILAIVGPSGAGKSSLLEILAGKL 95 (643)
Q Consensus 65 s~~i~~Ge~~ai~GpsGsGKSTLl~~L~g~~ 95 (643)
+...+.-..+.+.||.++||||++++|....
T Consensus 98 ~~~~~k~n~~~l~G~~~tGKS~f~~~i~~~l 128 (267)
T d1u0ja_ 98 TKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp TTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 5999761799998589887789999999983
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=86.86 E-value=0.25 Score=23.45 Aligned_cols=108 Identities=18% Similarity=0.272 Sum_probs=55.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 99988999888999998965989996189999970890311034789825988899999999999998704999899999
Q 006505 74 LAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLR 153 (643)
Q Consensus 74 ~ai~GpsGsGKSTLl~~L~g~~~~~~G~I~~~g~~~~~~~~r~~~~yV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~ 153 (643)
..++||+|.|||++..-|+.+... |.- +...+...-|. +++..-++ .-..+.+.+
T Consensus 46 ~lLvG~pGVGKTalv~~LA~ri~~--------~~v--p~~L~~~~i~~---------ld~~~LiA------g~~~rG~~E 100 (195)
T d1jbka_ 46 PVLIGEPGVGKTAIVEGLAQRIIN--------GEV--PEGLKGRRVLA---------LDMGALVA------GAKYRGEFE 100 (195)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHH--------TCS--CGGGTTCEEEE---------ECHHHHHT------TTCSHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH--------CCC--CHHHCCCEEEE---------EEHHHHHC------CCCCCHHHH
T ss_conf 399835875447999999999980--------899--97881856999---------66999864------587407799
Q ss_pred HHHHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHC-C-CCEEEEECCCCCCCHHHH---HHHHHHHHHHHH
Q ss_conf 99999999939901223110797678779789899999999840-9-987898199999999999---999999999997
Q 006505 154 ARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIH-D-PKVLILDEPTSGLDSTSA---LQIIDMLKVMAE 228 (643)
Q Consensus 154 ~~v~~~l~~lgL~~~~~~~~g~~~~~~lSgGerqRvsia~aL~~-~-p~illlDEPTsgLD~~~~---~~i~~~L~~l~~ 228 (643)
+++..+++.+ .. + .-||+.||..+=+++.+. ..+-+.|+-.-.
T Consensus 101 ~rl~~il~e~--------------------------------~~~~~~iILfIDeih~l~~~g~~~g~~d~~~~Lkp~L~ 148 (195)
T d1jbka_ 101 ERLKGVLNDL--------------------------------AKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA 148 (195)
T ss_dssp HHHHHHHHHH--------------------------------HHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHH--------------------------------HCCCCCEEEECCHHHHHHCCCCCCCCCCHHHHHHHHHH
T ss_conf 9999999987--------------------------------31798089972608998437877775238999999985
Q ss_pred HCCCEEEEEE
Q ss_conf 1998999980
Q 006505 229 TRGRTVILSI 238 (643)
Q Consensus 229 ~~g~tii~~~ 238 (643)
.....+|.++
T Consensus 149 rg~l~~Igat 158 (195)
T d1jbka_ 149 RGELHCVGAT 158 (195)
T ss_dssp TTSCCEEEEE
T ss_pred CCCCEEEECC
T ss_conf 7995498518
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.63 E-value=0.17 Score=24.48 Aligned_cols=42 Identities=12% Similarity=0.207 Sum_probs=29.2
Q ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCH
Q ss_conf 409987898199999999999999999999997199899998058855
Q 006505 196 IHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGF 243 (643)
Q Consensus 196 ~~~p~illlDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~ 243 (643)
+.+-.++..| ...|.-+.+...+.... +.+..+++.+.....
T Consensus 119 ~~D~allVVd-a~eGv~~qT~~~~~~a~-----~~~~p~i~viNKiDr 160 (341)
T d1n0ua2 119 VTDGALVVVD-TIEGVCVQTETVLRQAL-----GERIKPVVVINKVDR 160 (341)
T ss_dssp TCSEEEEEEE-TTTBSCHHHHHHHHHHH-----HTTCEEEEEEECHHH
T ss_pred HCCCEEEEEE-CCCCCCHHHHHHHHHHH-----HCCCCEEEEEECCCC
T ss_conf 2372499986-56682046999999998-----769986999877265
|
| >d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]
Probab=85.99 E-value=0.37 Score=22.35 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=21.1
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 46809999889998889999989659
Q 006505 69 KPWEILAIVGPSGAGKSSLLEILAGK 94 (643)
Q Consensus 69 ~~Ge~~ai~GpsGsGKSTLl~~L~g~ 94 (643)
+..+.+.|.|.||||||+-.|.+...
T Consensus 84 ~~~QsIiisGeSGsGKTe~~k~il~y 109 (684)
T d1lkxa_ 84 QENQCVIISGESGAGKTEASKKIMQF 109 (684)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 89818999738989989999999999
|
| >d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=85.20 E-value=0.39 Score=22.22 Aligned_cols=27 Identities=33% Similarity=0.385 Sum_probs=22.3
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 468099998899988899999896598
Q 006505 69 KPWEILAIVGPSGAGKSSLLEILAGKL 95 (643)
Q Consensus 69 ~~Ge~~ai~GpsGsGKSTLl~~L~g~~ 95 (643)
+..+.+.|.|.||||||.-.|.+...+
T Consensus 123 ~~nQsIiisGeSGaGKTe~~k~il~yL 149 (712)
T d1d0xa2 123 RQNQSLLITGESGAGKTENTKKVIQYL 149 (712)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 899169996799888899999999999
|
| >d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]
Probab=85.00 E-value=0.4 Score=22.13 Aligned_cols=27 Identities=26% Similarity=0.284 Sum_probs=21.7
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 468099998899988899999896598
Q 006505 69 KPWEILAIVGPSGAGKSSLLEILAGKL 95 (643)
Q Consensus 69 ~~Ge~~ai~GpsGsGKSTLl~~L~g~~ 95 (643)
+..+.+.|.|.||||||+-.|.+...+
T Consensus 89 ~~~Q~IiisGeSGaGKTe~~k~il~yL 115 (710)
T d1br2a2 89 REDQSILCTGESGAGKTENTKKVIQYL 115 (710)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 899179997189888899999999999
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=84.13 E-value=0.39 Score=22.20 Aligned_cols=24 Identities=17% Similarity=0.252 Sum_probs=20.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 809999889998889999989659
Q 006505 71 WEILAIVGPSGAGKSSLLEILAGK 94 (643)
Q Consensus 71 Ge~~ai~GpsGsGKSTLl~~L~g~ 94 (643)
.=-++++|.-.+|||||++.|.+.
T Consensus 3 ~ini~iiGHvd~GKSTL~~~l~~~ 26 (196)
T d1d2ea3 3 HVNVGTIGHVDHGKTTLTAAITKI 26 (196)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 718999958898099999999999
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=83.99 E-value=0.32 Score=22.72 Aligned_cols=20 Identities=35% Similarity=0.489 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99998899988899999896
Q 006505 73 ILAIVGPSGAGKSSLLEILA 92 (643)
Q Consensus 73 ~~ai~GpsGsGKSTLl~~L~ 92 (643)
-++++|.-++|||||+..|.
T Consensus 5 Ni~viGHVd~GKTTL~~~Ll 24 (224)
T d1jnya3 5 NLIVIGHVDHGKSTLVGRLL 24 (224)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHH
T ss_conf 89999447999999999999
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=83.91 E-value=0.25 Score=23.37 Aligned_cols=31 Identities=16% Similarity=-0.005 Sum_probs=25.0
Q ss_pred CEEEEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 0479984680999988999888999998965
Q 006505 63 GVSCKAKPWEILAIVGPSGAGKSSLLEILAG 93 (643)
Q Consensus 63 ~is~~i~~Ge~~ai~GpsGsGKSTLl~~L~g 93 (643)
|.-+.+..|+-.+|.|++|+|||+|+.-++.
T Consensus 60 D~l~pig~GQr~~If~~~g~GKt~ll~~~~~ 90 (285)
T d2jdia3 60 DSLVPIGRGQRELIIGDRQTGKTSIAIDTII 90 (285)
T ss_dssp HHHSCCBTTCBCEEEESTTSSHHHHHHHHHH
T ss_pred ECCCCCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 4346766787787656888885899999997
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=83.28 E-value=0.34 Score=22.54 Aligned_cols=110 Identities=20% Similarity=0.303 Sum_probs=56.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 99988999888999998965989996189999970890311034789825988899999999999998704999899999
Q 006505 74 LAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLR 153 (643)
Q Consensus 74 ~ai~GpsGsGKSTLl~~L~g~~~~~~G~I~~~g~~~~~~~~r~~~~yV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~ 153 (643)
..|+||+|.|||++..-|+.+.. +|++ +...+...-|...-..+..+.+ .+.+..
T Consensus 46 ~llvG~~GvGKtaiv~~la~~i~--~~~v--------p~~l~~~~i~~ld~~~l~ag~~---------------~~g~~e 100 (387)
T d1qvra2 46 PVLIGEPGVGKTAIVEGLAQRIV--KGDV--------PEGLKGKRIVSLQMGSLLAGAK---------------YRGEFE 100 (387)
T ss_dssp CEEEECTTSCHHHHHHHHHHHHH--HTCS--------CTTSTTCEEEEECC--------------------------CHH
T ss_pred CEEECCCCCCHHHHHHHHHHHHH--HCCC--------CHHHCCCEEEEEEHHHHHCCCC---------------CCHHHH
T ss_conf 76879999889999999999998--0899--------9788696689955766652667---------------413689
Q ss_pred HHHHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHC-C-CCEEEEECCCCCCCHH---HHHHHHHHHHHHHH
Q ss_conf 99999999939901223110797678779789899999999840-9-9878981999999999---99999999999997
Q 006505 154 ARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIH-D-PKVLILDEPTSGLDST---SALQIIDMLKVMAE 228 (643)
Q Consensus 154 ~~v~~~l~~lgL~~~~~~~~g~~~~~~lSgGerqRvsia~aL~~-~-p~illlDEPTsgLD~~---~~~~i~~~L~~l~~ 228 (643)
+++..+++. +.. + +-||++||-.+=+... .......+|+-.-.
T Consensus 101 ~r~~~i~~~--------------------------------~~~~~~~~ilfide~h~l~~~g~~~g~~d~a~~Lkp~L~ 148 (387)
T d1qvra2 101 ERLKAVIQE--------------------------------VVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA 148 (387)
T ss_dssp HHHHHHHHH--------------------------------HHTTCSSEEEEECCC-------------------HHHHH
T ss_pred HHHHHHHHH--------------------------------HCCCCCCEEEEECCHHHHHCCCCCCCCCCHHHHHHHHHH
T ss_conf 999999998--------------------------------505899669872408888427778774138999999973
Q ss_pred HCCCEEEEEECC
Q ss_conf 199899998058
Q 006505 229 TRGRTVILSIHQ 240 (643)
Q Consensus 229 ~~g~tii~~~H~ 240 (643)
.....+|.++..
T Consensus 149 rg~~~~I~~tT~ 160 (387)
T d1qvra2 149 RGELRLIGATTL 160 (387)
T ss_dssp TTCCCEEEEECH
T ss_pred CCCCCEEEECCH
T ss_conf 788516663689
|
| >d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]
Probab=82.73 E-value=0.49 Score=21.60 Aligned_cols=26 Identities=27% Similarity=0.311 Sum_probs=20.3
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 46809999889998889999989659
Q 006505 69 KPWEILAIVGPSGAGKSSLLEILAGK 94 (643)
Q Consensus 69 ~~Ge~~ai~GpsGsGKSTLl~~L~g~ 94 (643)
+..+.+.|.|.||||||+-.|.+...
T Consensus 121 ~~~QsIiisGeSGaGKTe~~K~il~y 146 (794)
T d2mysa2 121 RENQSILITGESGAGKTVNTKRVIQY 146 (794)
T ss_dssp TCCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 99807999717988789999999999
|
| >d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]
Probab=81.95 E-value=0.63 Score=20.89 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=20.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 6809999889998889999989659
Q 006505 70 PWEILAIVGPSGAGKSSLLEILAGK 94 (643)
Q Consensus 70 ~Ge~~ai~GpsGsGKSTLl~~L~g~ 94 (643)
..+.+.|.|.||||||+-.+.+...
T Consensus 93 ~~Q~IiisGeSGsGKTe~~k~il~~ 117 (730)
T d1w7ja2 93 RNQSIIVSGESGAGKTVSAKYAMRY 117 (730)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 9807999717999879999999999
|
| >d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Bay scallop (Aequipecten irradians) [TaxId: 31199]
Probab=81.49 E-value=0.57 Score=21.17 Aligned_cols=25 Identities=28% Similarity=0.217 Sum_probs=19.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 6809999889998889999989659
Q 006505 70 PWEILAIVGPSGAGKSSLLEILAGK 94 (643)
Q Consensus 70 ~Ge~~ai~GpsGsGKSTLl~~L~g~ 94 (643)
..+.+.|.|.||||||.-.|.+...
T Consensus 120 ~nQ~IiisGESGaGKTe~~K~il~y 144 (789)
T d1kk8a2 120 ENQSCLITGESGAGKTENTKKVIMY 144 (789)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 9947999708999879999999999
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=80.77 E-value=0.64 Score=20.84 Aligned_cols=21 Identities=29% Similarity=0.377 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999889998889999989659
Q 006505 74 LAIVGPSGAGKSSLLEILAGK 94 (643)
Q Consensus 74 ~ai~GpsGsGKSTLl~~L~g~ 94 (643)
++++|.-.+|||||++.|...
T Consensus 12 i~viGHVd~GKSTL~~~Ll~~ 32 (222)
T d1zunb3 12 FLTCGNVDDGKSTLIGRLLHD 32 (222)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999937898989999999998
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.12 E-value=0.58 Score=21.11 Aligned_cols=20 Identities=25% Similarity=0.370 Sum_probs=17.9
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99998899988899999896
Q 006505 73 ILAIVGPSGAGKSSLLEILA 92 (643)
Q Consensus 73 ~~ai~GpsGsGKSTLl~~L~ 92 (643)
-++++|..++|||||...|.
T Consensus 8 Ni~iiGHvD~GKsTl~~~ll 27 (239)
T d1f60a3 8 NVVVIGHVDSGKSTTTGHLI 27 (239)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHH
T ss_conf 79999478998999999999
|