Citrus Sinensis ID: 006516


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640--
MEVSSRTRNMLEGLVREGSFKWLLGSRSSFDDEFEEMERSPSAGRNWIQELSPLANIVVRRCSKILGISSSELQESFNAEASEAIKHPSRYARNFLEYCCFRTLALSTQVTGHLADKKFRRLTYDVMLAWEVPAASSQPLLNVDGDATVGMEAFSRIAPAVPIIANVVISENLFEVLTSSTGGRLQYSIFNKYITGLERAIKKMKTQSESSILSAIRSSRGEKILEVDGTVTTQPVLEHVGISTWPGRLTLTDHALYFEAHRVVSYEKAKIYDLAEDLKQVVKPELTGPWGTRLFDKAVFYKSVSLSEPIILEFPELKGHTRRDYWLAIIREILYAHRFINKFQITGVQRDEVLSKAVLGILRLQAIQEISTANSVRCESLLMFNLCDQLPGGDLILETLANMSNLRELERTNKSVGGVGMYSISAMAMVSNLGFVFGPSSSNNSIEAGAGLVVGEIAVGEMSPLERTVKESRNSYKKVVQAQETVDGVKVDGIDTNLAVMKELLLPAMEVGRWLLSLAYWDDPLKSSVFCLVFTFIICRGWLGYALALLLIFFAIFMVLTRFLNQGKPVDEVKVIAPPPMNTMEQLLAVQNAISQAEQLIQDGNIFLLKLRGLLLTIFPQASDKFAVGLLLTGVDFDICTQ
ccccHHHHHHHHHHHHcccccccccccccccccHHHccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHccccccccccHHHHHHHHHHHHcHHHHcccccccccccccccHHHHHHHHHcccccccccccccccccccccHHHHHHHcccccccccccccHHHHHHHHccccccEEHHHHHHHHHHHHHHHHHHHHccccccccccccccccEEEEEEccccccccEEEEccccccccEEEcccEEEEEEcccccccccEEEEcccccccccccccccccccccccEEEEEEcccccccEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHcccccccccHHHHHHHHHccccccccccccccccccccccHHHHHHcccccccccccccccccccccEEEcEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccc
ccHHHHHHHHHHHHHHcccHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHccHHccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccccccccEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHccccccccccEcccccEEEEEEcccccccEEEEEcccccccEEEEEccEEEEEHcccEcccccEEEEcHHHHcccEccccccccccHHHccEEEEEcccccccEEEEccccccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccccHHHHHHHHHccccccccccccccccccccccHHHHHHHHcHcccccccccccccccEEEEEEEEEccccHHHHHHHHHHHHccHHHHHHHHHHHcEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcc
MEVSSRTRNMLEGLVREGSFKwllgsrssfddefeemerspsagrnwiqelsPLANIVVRRCSKILGISSSELQESFNAEASEAIKHPSRYARNFLEYCCFRTLALSTQVTGHLADKKFRRLTYDVMLAwevpaassqpllnvdgdatvGMEAFsriapavpiiaNVVISENLFEVLtsstggrlqySIFNKYITGLERAIKKMKTQSESSILSAIRSSrgekilevdgtvttqpvlehvgistwpgrltltdhalYFEAHRVVSYEKAKIYDLAEDLKQvvkpeltgpwgtrlfDKAVFYKsvslsepiilefpelkghtrrDYWLAIIREILYAHRFINKFQitgvqrdeVLSKAVLGILRLQAIQEISTANSVRCESLLMFNlcdqlpggdLILETLANMSNLRELERtnksvggvGMYSISAMAMVSNLgfvfgpsssnnsieagaGLVVGEiavgemsplertVKESRNSYKKVVQAQEtvdgvkvdgiDTNLAVMKELLLPAMEVGRWLLSLaywddplkssVFCLVFTFIICRGWLGYALALLLIFFAIFMVLTRFlnqgkpvdevkviapppmntMEQLLAVQNAISQAEQLIQDGNIFLLKLRGLLLTIFPQASDKFAVGLLltgvdfdictq
mevssrtrnmleglvregsfkwllGSRSSFDDEFEEMERspsagrnwiqelsPLANIVVRRCSKILGISSSELQESFNAEASEAIKHPSRYARNFLEYCCFRTLALSTQVTGHLADKKFRRLTYDVMLAWEVpaassqpllNVDGDATVGMEAFSRIAPAVPIIANVVISENLFEVltsstggrlqySIFNKYITGLERAIKKMKTQSESSILSAirssrgekilevdgtvttqpvlehvgistwpgrLTLTDHALYFEAHRVVSYEKAKIYDLAEDLKQVVKpeltgpwgtrlfDKAVFYKSVSlsepiilefpelkghtrrDYWLAIIREILYAHRFINKFQITGVQRDEVLSKAVLGILRLQAIQEISTANSVRCESLLMFNLCDQLPGGDLILETLANMSNLRELERTNKSVGGVGMYSISAMAMVSNLGFVFGPSSSNNSIEAGAGLVVGEIAVGEMSPLERTVKESRNSYKKvvqaqetvdgvkvdgiDTNLAVMKELLLPAMEVGRWLLSLAYWDDPLKSSVFCLVFTFIICRGWLGYALALLLIFFAIFMVLTRFLNQGKPVDEVKVIAPPPMNTMEQLLAVQNAISQAEQLIQDGNIFLLKLRGLLLTIFPQASDKFAVGLLLTGvdfdictq
MEVSSRTRNMLEGLVREGSFKWLLGSRSSFDDEFEEMERSPSAGRNWIQELSPLANIVVRRCSKILGISSSELQESFNAEASEAIKHPSRYARNFLEYCCFRTLALSTQVTGHLADKKFRRLTYDVMLAWEVPAASSQPLLNVDGDATVGMEAFSRIAPAVPIIANVVISENLFEVLTSSTGGRLQYSIFNKYITGLERAIKKMKTQsessilsairssrGEKILEVDGTVTTQPVLEHVGISTWPGRLTLTDHALYFEAHRVVSYEKAKIYDLAEDLKQVVKPELTGPWGTRLFDKAVFYKSVSLSEPIILEFPELKGHTRRDYWLAIIREILYAHRFINKFQITGVQRDEVLSKAVLGILRLQAIQEISTANSVRCESLLMFNLCDQLPGGDLILETLANMSNLRELERTNKSVGGVGMYSISAMAMVSNLGFVFGPSSSNNSIEAGAGLVVGEIAVGEMSPLERTVKESRNSYKKVVQAQETVDGVKVDGIDTNLAVMKELLLPAMEVGRWLLSLAYWDDPLKSSVFCLVFTFIICRGWLGYalallliffaifMVLTRFLNQGKPVDEVKVIAPPPMNTMEQLLAVQNAISQAEQLIQDGNIFLLKLRGLLLTIFPQASDKFAVGLLLTGVDFDICTQ
**************VREGSFKWLL*********************NWIQELSPLANIVVRRCSKILGIS******************PSRYARNFLEYCCFRTLALSTQVTGHLADKKFRRLTYDVMLAWEVPAASSQPLLNVDGDATVGMEAFSRIAPAVPIIANVVISENLFEVLTSSTGGRLQYSIFNKYITGLERAIK********************KILEVDGTVTTQPVLEHVGISTWPGRLTLTDHALYFEAHRVVSYEKAKIYDLAEDLKQVVKPELTGPWGTRLFDKAVFYKSVSLSEPIILEFPELKGHTRRDYWLAIIREILYAHRFINKFQITGVQRDEVLSKAVLGILRLQAIQEISTANSVRCESLLMFNLCDQLPGGDLILETLANMSNLRELERTNKSVGGVGMYSISAMAMVSNLGFVFGP******IEAGAGLVVGEIAVG*****************KVVQAQETVDGVKVDGIDTNLAVMKELLLPAMEVGRWLLSLAYWDDPLKSSVFCLVFTFIICRGWLGYALALLLIFFAIFMVLTRFLNQGKPVDEVKVIAPPPMNTMEQLLAVQNAISQAEQLIQDGNIFLLKLRGLLLTIFPQASDKFAVGLLLTGVDFDIC**
*********MLEGLVREG*********************************SPLANIVVRRCSKILGISSSELQESFNAEASEAIKHPSRYARNFLEYCCFRTLALSTQVTGHLADKKFRRLTYDVMLAWEVPA**************VGMEAFSRIAPAVPIIANVVISENLFEVLTSSTGGRLQYSIFNKYITGLERAI*******************GEKILEVDGTVTTQPVLEHVGISTWPGRLTLTDHALYFEAHRVVSYEKAKIYDLAEDLKQVVKPELTGPWGTRLFDKAVFYKSVSLSEPIILEFPELKGHTRRDYWLAIIREILYAHRFINKFQITGVQRDEVLSKAVLGILRLQAIQEISTANSVRCESLLMFNLCDQLPGGDLILETLA****************************************************VGEIAVGEMSPLERTVKESRNSYKKVVQAQETVDGVKVDGIDTNLAVMKELLLPAMEVGRWLLSLAYWDDPLKSSVFCLVFTFIICRGWLGYALALLLIFFAIFMVLTRFLNQGKPVDE***I*****NTMEQLLAVQNAISQAEQLIQDGNIFLLKLRGLLLTIFPQASDKFAVGLLLTGVDFDICTQ
********NMLEGLVREGSFKWLLGSRSS*************AGRNWIQELSPLANIVVRRCSKILGISSSELQESFNAEASEAIKHPSRYARNFLEYCCFRTLALSTQVTGHLADKKFRRLTYDVMLAWEVPAASSQPLLNVDGDATVGMEAFSRIAPAVPIIANVVISENLFEVLTSSTGGRLQYSIFNKYITGLERAIK***********SAIRSSRGEKILEVDGTVTTQPVLEHVGISTWPGRLTLTDHALYFEAHRVVSYEKAKIYDLAEDLKQVVKPELTGPWGTRLFDKAVFYKSVSLSEPIILEFPELKGHTRRDYWLAIIREILYAHRFINKFQITGVQRDEVLSKAVLGILRLQAIQEISTANSVRCESLLMFNLCDQLPGGDLILETLANMSNLRELERTNKSVGGVGMYSISAMAMVSNLGFVFGPSSSNNSIEAGAGLVVGEIAVGEMSPLERTVKESRNSYKKVVQAQETVDGVKVDGIDTNLAVMKELLLPAMEVGRWLLSLAYWDDPLKSSVFCLVFTFIICRGWLGYALALLLIFFAIFMVLTRFLNQGKPVDEVKVIAPPPMNTMEQLLAVQNAISQAEQLIQDGNIFLLKLRGLLLTIFPQASDKFAVGLLLTGVDFDICTQ
***********E*L*REGSFKWLLG**********************IQELSPLANIVVRRCSKILGISSSELQESFNAEASEAIKHPSRYARNFLEYCCFRTLALSTQVTGHLADKKFRRLTYDVMLAWEVPAASSQPLLNVDGDATVGMEAFSRIAPAVPIIANVVISENLFEVLTSSTGGRLQYSIFNKYITGLERAIKKMKTQSESSILSAIRSSRGEKILEVDGTVTTQPVLEHVGISTWPGRLTLTDHALYFEAHRVVSYEKAKIYDLAEDLKQVVKPELTGPWGTRLFDKAVFYKSVSLSEPIILEFPELKGHTRRDYWLAIIREILYAHRFINKFQITGVQRDEVLSKAVLGILRLQAIQEISTANSVRCESLLMFNLCDQLPGGDLILETLANMSN*****************SISAMAMVSNLGFVFGPSSSNNSIEAGAGLVVGEIAVGEMSPLERTVKESRNSYKKVVQAQETVDGVKVDGIDTNLAVMKELLLPAMEVGRWLLSLAYWDDPLKSSVFCLVFTFIICRGWLGYALALLLIFFAIFMVLTRFLNQGKPVDEVKVIAPPPMNTMEQLLAVQNAISQAEQLIQDGNIFLLKLRGLLLTIFPQASDKFAVGLLLTGVDFDICTQ
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MEVSSRTRNMLEGLVREGSFKWLLGSRSSFDDEFEEMERSPSAGRNWIQELSPLANIVVRRCSKILGISSSELQESFNAEASEAIKHPSRYARNFLEYCCFRTLALSTQVTGHLADKKFRRLTYDVMLAWEVPAASSQPLLNVDGDATVGMEAFSRIAPAVPIIANVVISENLFEVLTSSTGGRLQYSIFNKYITGLERAIKKMKTQSESSILSAIRSSRGEKILEVDGTVTTQPVLEHVGISTWPGRLTLTDHALYFEAHRVVSYEKAKIYDLAEDLKQVVKPELTGPWGTRLFDKAVFYKSVSLSEPIILEFPELKGHTRRDYWLAIIREILYAHRFINKFQITGVQRDEVLSKAVLGILRLQAIQEISTANSVRCESLLMFNLCDQLPGGDLILETLANMSNLRELERTNKSVGGVGMYSISAMAMVSNLGFVFGPSSSNNSIEAGAGLVVGEIAVGEMSPLERTVKESRNSYKKVVQAQETVDGVKVDGIDTNLAVMKELLLPAMEVGRWLLSLAYWDDPLKSSVFCLVFTFIICRGWLGYALALLLIFFAIFMVLTRFLNQGKPVDEVKVIAPPPMNTMEQLLAVQNAISQAEQLIQDGNIFLLKLRGLLLTIFPQASDKFAVGLLLTGVDFDICTQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query642
224135381695 predicted protein [Populus trichocarpa] 0.979 0.905 0.803 0.0
224118806695 predicted protein [Populus trichocarpa] 0.971 0.897 0.794 0.0
255582763739 conserved hypothetical protein [Ricinus 0.976 0.848 0.772 0.0
147864635691 hypothetical protein VITISV_005220 [Viti 0.970 0.901 0.793 0.0
356520599693 PREDICTED: uncharacterized protein LOC10 0.984 0.911 0.746 0.0
449439079693 PREDICTED: uncharacterized protein LOC10 0.984 0.911 0.727 0.0
356531202693 PREDICTED: uncharacterized protein LOC10 0.984 0.911 0.740 0.0
359491450657 PREDICTED: uncharacterized protein LOC10 0.917 0.896 0.751 0.0
297734214723 unnamed protein product [Vitis vinifera] 0.917 0.814 0.751 0.0
357500343693 hypothetical protein MTR_6g084190 [Medic 0.984 0.911 0.721 0.0
>gi|224135381|ref|XP_002322059.1| predicted protein [Populus trichocarpa] gi|222869055|gb|EEF06186.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1043 bits (2698), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 508/632 (80%), Positives = 571/632 (90%), Gaps = 3/632 (0%)

Query: 4   SSRTRNMLEGLVREGSFKWLLGSRSSFDDEFEEMERSPSAGRNWIQELSPLANIVVRRCS 63
           +S+TR++LEGL+REGSFKWLLG  SSF++EFEEMERSPSAGRNWI ELSPLAN+VVRRCS
Sbjct: 6   ASKTRSVLEGLLREGSFKWLLGKGSSFNEEFEEMERSPSAGRNWIAELSPLANVVVRRCS 65

Query: 64  KILGISSSELQESFNAEASEAIKHPSRYARNFLEYCCFRTLALSTQVTGHLADKKFRRLT 123
           KILGIS+ ELQESFNAEAS+++KH S YARNFLEYCCFR LALSTQVTGHLADKKFRRLT
Sbjct: 66  KILGISACELQESFNAEASDSLKHLSCYARNFLEYCCFRALALSTQVTGHLADKKFRRLT 125

Query: 124 YDVMLAWEVPAASSQPLLNVDGDATVGMEAFSRIAPAVPIIANVVISENLFEVLTSSTGG 183
           YD+MLAW  PAA+SQPLLNVD D TVG+EAFSRIAPAVPIIA+VVISENLF+VLT +T G
Sbjct: 126 YDMMLAWTTPAAASQPLLNVDEDLTVGLEAFSRIAPAVPIIAHVVISENLFDVLTKATDG 185

Query: 184 RLQYSIFNKYITGLERAIKKMKTQSESSILSAIRSSRGEKILEVDGTVTTQPVLEHVGIS 243
           RLQ+SI++KY++GLERAIKKMKTQS+SS+LS +R SR EKILEVDGTVTTQPVLEHVGIS
Sbjct: 186 RLQFSIYDKYLSGLERAIKKMKTQSDSSLLSTLRLSRREKILEVDGTVTTQPVLEHVGIS 245

Query: 244 TWPGRLTLTDHALYFEAHRVVSYEKAKIYDLAEDLKQVVKPELTGPWGTRLFDKAVFYKS 303
           TWPGRLTLTDHALYFEA RVVSY+K KIYDL++DLKQ++KPELTGPWGTRLFDKAVFYKS
Sbjct: 246 TWPGRLTLTDHALYFEALRVVSYDKPKIYDLSDDLKQIIKPELTGPWGTRLFDKAVFYKS 305

Query: 304 VSLSEPIILEFPELKGHTRRDYWLAIIREILYAHRFINKFQITGVQRDEVLSKAVLGILR 363
           +SLSEP ++EFPELKGHTRRDYWLAIIREILY HRFI KF+I+GV+RDE LSKAVLGILR
Sbjct: 306 ISLSEPAVIEFPELKGHTRRDYWLAIIREILYVHRFIKKFKISGVERDEALSKAVLGILR 365

Query: 364 LQAIQEISTANSVRCESLLMFNLCDQLPGGDLILETLANMSNLRELERTNKSVGGVGMYS 423
           LQAIQEIS  NSV CE+LLMFNLCDQLPGGDLILETLANMS++REL+RTN    G GMYS
Sbjct: 366 LQAIQEISAVNSVCCETLLMFNLCDQLPGGDLILETLANMSSIRELDRTNNYKAGGGMYS 425

Query: 424 ISAMAMVSNLGFVFGPSSSNNSIEAGAGLVVGEIAVGEMSPLERTVKESRNSYKKVVQAQ 483
           IS++AMVSNLGFV G SSS+ +    AGLVVGEIAVGEMS LE+ VKES+NSYKK V AQ
Sbjct: 426 ISSLAMVSNLGFVLGTSSSDLN---EAGLVVGEIAVGEMSSLEKVVKESQNSYKKTVLAQ 482

Query: 484 ETVDGVKVDGIDTNLAVMKELLLPAMEVGRWLLSLAYWDDPLKSSVFCLVFTFIICRGWL 543
           ETV+GVKVDGIDTNLAVMKELLLP MEVG+WL+SL +WDDP+KS VFCLV T++I RGWL
Sbjct: 483 ETVNGVKVDGIDTNLAVMKELLLPVMEVGKWLISLIHWDDPMKSLVFCLVLTYVIWRGWL 542

Query: 544 GYALALLLIFFAIFMVLTRFLNQGKPVDEVKVIAPPPMNTMEQLLAVQNAISQAEQLIQD 603
            YA  L+ IF AIFMVLTRF NQG+PVD++KV+APPPMNT+EQLLAVQNAISQAEQ IQD
Sbjct: 543 SYAFGLMTIFLAIFMVLTRFCNQGRPVDKLKVVAPPPMNTVEQLLAVQNAISQAEQFIQD 602

Query: 604 GNIFLLKLRGLLLTIFPQASDKFAVGLLLTGV 635
           GNI LLK R LLL+IFPQAS+KFA  LL   +
Sbjct: 603 GNIILLKFRALLLSIFPQASEKFAFTLLCVAL 634




Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224118806|ref|XP_002317911.1| predicted protein [Populus trichocarpa] gi|222858584|gb|EEE96131.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255582763|ref|XP_002532158.1| conserved hypothetical protein [Ricinus communis] gi|223528168|gb|EEF30232.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|147864635|emb|CAN84081.1| hypothetical protein VITISV_005220 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356520599|ref|XP_003528949.1| PREDICTED: uncharacterized protein LOC100803163 [Glycine max] Back     alignment and taxonomy information
>gi|449439079|ref|XP_004137315.1| PREDICTED: uncharacterized protein LOC101213898 [Cucumis sativus] gi|449529846|ref|XP_004171909.1| PREDICTED: uncharacterized LOC101213898 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356531202|ref|XP_003534167.1| PREDICTED: uncharacterized protein LOC100778964 [Glycine max] Back     alignment and taxonomy information
>gi|359491450|ref|XP_002276472.2| PREDICTED: uncharacterized protein LOC100252490 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297734214|emb|CBI15461.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|357500343|ref|XP_003620460.1| hypothetical protein MTR_6g084190 [Medicago truncatula] gi|355495475|gb|AES76678.1| hypothetical protein MTR_6g084190 [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query642
TAIR|locus:2095032692 AT3G18350 "AT3G18350" [Arabido 0.976 0.906 0.673 6.3e-227
TAIR|locus:2200844691 AT1G48840 "AT1G48840" [Arabido 0.971 0.903 0.675 1.7e-226
TAIR|locus:2184327730 AT5G23390 "AT5G23390" [Arabido 0.763 0.671 0.445 8.9e-128
TAIR|locus:2032283824 AT1G71240 "AT1G71240" [Arabido 0.512 0.399 0.317 4.8e-49
TAIR|locus:2095032 AT3G18350 "AT3G18350" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2190 (776.0 bits), Expect = 6.3e-227, P = 6.3e-227
 Identities = 424/630 (67%), Positives = 513/630 (81%)

Query:     3 VSSRTRNMLEGLVREGSFKWLLGSRSSFDDEFEEMERSPSAGRNWIQELSPLANIVVRRC 62
             +SS+TRNMLEGLVR+ SFKWLLG +SSFD+E EEM RSPSAG NWI ELSP+AN+VVRRC
Sbjct:     1 MSSKTRNMLEGLVRDTSFKWLLGKQSSFDEEIEEMGRSPSAGTNWIPELSPIANVVVRRC 60

Query:    63 SKILGISSSELQESFNAEASEAIKHPSRYARNFLEYCCFRTLALSTQVTGHLADKKFRRL 122
             SKILG+S++EL++SF  EA E++K PS + RNFLEYCCFR L+LS  VTGHLADKKFRRL
Sbjct:    61 SKILGVSANELRDSFKQEAFESLKQPSLFPRNFLEYCCFRALSLSVGVTGHLADKKFRRL 120

Query:   123 TYDVMLAWEVPAASSQPLLNVDGDATVGMEAFSRIAPAVPIIANVVISENLFEVLTSSTG 182
             T+D+M+ WEVPA +SQ LL+V+ DATV +EAFSRIAPAVPIIA+V+I +NLF++LTSSTG
Sbjct:   121 TFDMMVVWEVPAVASQALLSVEEDATVSLEAFSRIAPAVPIIADVIICDNLFQMLTSSTG 180

Query:   183 GRLQYSIFNKYITGLERAIKKMKTQXXXXXXXXXXXXXGEKILEVDGTVTTQPVLEHVGI 242
             GRLQ+S+++KY+ GLERAIKKM+TQ              EKILE+DGTVTTQPVLEHVGI
Sbjct:   181 GRLQFSVYDKYLHGLERAIKKMRTQSESSLLSGVRSKR-EKILEIDGTVTTQPVLEHVGI 239

Query:   243 STWPGRLTLTDHALYFEAHRVVSYEKAKIYDLAEDLKQVVKPELTGPWGTRLFDKAVFYK 302
             STWPGRL LTDH+LYFEA +VVSY+  K Y L+EDLKQ++KPELTGPWGTRLFDKAV Y+
Sbjct:   240 STWPGRLILTDHSLYFEALKVVSYDTPKRYHLSEDLKQIIKPELTGPWGTRLFDKAVSYQ 299

Query:   303 SVSLSEPIILEFPELKGHTRRDYWLAIIREILYAHRFINKFQITGVQRDEVLSKAVLGIL 362
             S+SLSEP+++EFPELKGHTRRDYWL II+E+LY HR+INK++ITG+ RDE LSKAVLG++
Sbjct:   300 SISLSEPVVMEFPELKGHTRRDYWLTIIQEVLYVHRYINKYKITGLARDEALSKAVLGVM 359

Query:   363 RLQAIQEISTANSVRCESLLMFNLCDQLPGGDLILETLANMSNLRELERTNKSVGGVGMY 422
             R+QA+QE++  N++R E+LL FNLCDQLPGGDLILETLA MS  REL R+NKS     ++
Sbjct:   360 RVQALQELNLTNAMRYENLLPFNLCDQLPGGDLILETLAEMSTSRELHRSNKSKDTGTLH 419

Query:   423 SISAMAMVSNLGFVFGPSSSNNSIEAGAGLVVGEIAVGEMSPLERTVKESRNSYKKVVQA 482
             S SA  MVS LG VFG SS  +  E  + LVVGE+ VG+++PLER VKESR  Y+KVV A
Sbjct:   420 S-SASDMVSQLGSVFGGSSPRSRRETSS-LVVGEVVVGDVNPLERAVKESRKKYEKVVLA 477

Query:   483 QETVDGVKVDGIDTNLAVMKELLLPAMEVGRWLLSLAYWDDPLKSSVFCLVFTFIICRGW 542
             QET++GVK+ GIDTNLAVMKEL+LP ME    +LS+ YWDDP KSSVFCL+ TFII RGW
Sbjct:   478 QETINGVKMGGIDTNLAVMKELMLPIMETWNLILSVVYWDDPTKSSVFCLLTTFIIWRGW 537

Query:   543 LGYXXXXXXXXXXXXMVLTRFLNQGKPVDEVKVIAPPPMNTMEQLLAVQNAISQAEQLIQ 602
             L Y            MVLTR  ++ K + E+KV APPPMNTMEQLLAVQN IS+ EQ IQ
Sbjct:   538 LVYVFALASLFSAIFMVLTRCFSREKLMIELKVTAPPPMNTMEQLLAVQNGISELEQNIQ 597

Query:   603 DGNIFLLKLRGLLLTIFPQASDKFAVGLLL 632
             D NI LLK R LL ++FPQAS KFA+ +++
Sbjct:   598 DANIVLLKFRALLFSLFPQASQKFAIAIVV 627




GO:0003674 "molecular_function" evidence=ND
GO:0005739 "mitochondrion" evidence=ISM
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2200844 AT1G48840 "AT1G48840" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2184327 AT5G23390 "AT5G23390" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2032283 AT1G71240 "AT1G71240" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query642
pfam04842682 pfam04842, DUF639, Plant protein of unknown functi 0.0
>gnl|CDD|218288 pfam04842, DUF639, Plant protein of unknown function (DUF639) Back     alignment and domain information
 Score =  752 bits (1942), Expect = 0.0
 Identities = 307/622 (49%), Positives = 405/622 (65%), Gaps = 22/622 (3%)

Query: 38  ERSPSAGRNWIQELSPLANIVVRRCSKILGISSSELQESFNAEASEAIKHPSRYARNFLE 97
           + SP A R+ I +LS +ANIVV RCSKILGI+  +LQ+ F  E S ++     YARNF+E
Sbjct: 11  QHSPKAVRSDIPKLSFIANIVVERCSKILGITGKDLQDIFETEVSPSLSQGGTYARNFVE 70

Query: 98  YCCFRTLAL-STQVTGHLADKKFRRLTYDVMLAWEVPAASSQP------------LLNVD 144
           YCCFR L+  S++    L D  FRRLT+D+MLAWE P   S+              L VD
Sbjct: 71  YCCFRALSRDSSEFHPCLKDPAFRRLTFDMMLAWENPYVKSRNSYNDASGKPSFMPLLVD 130

Query: 145 GDATVGMEAFSRIAPAVPIIANVVISENLFEVLTSSTGGRLQYSIFNKYITGLERAIKKM 204
              +VG EAF RIAPA+P IA+ +   NLF+ LTSSTG RL + +++KY+  L +  K  
Sbjct: 131 EGRSVGEEAFIRIAPAIPGIADRITVHNLFKALTSSTGHRLHFEVYDKYLQELVKIHKGR 190

Query: 205 KTQSESSILSAIRSSRGEKILEVDGTVTTQPVLEHVGISTWPGRLTLTDHALYFEAHRVV 264
           K+QS  S +    +   E IL +DGT+  QPVL+HVGIS WPG+LTLTD ALYFEA  + 
Sbjct: 191 KSQSTPSGIDFPLAKS-EIILCMDGTMRKQPVLKHVGISAWPGKLTLTDKALYFEAVGIK 249

Query: 265 SYEKAKIYDLAEDLKQVVKPELTGPWGTRLFDKAVFYKSVSLSEPIILEFPELKGHTRRD 324
            YE    YDL+ED KQ +KPELTGP G RLFDKAV Y S+   EP++LEFPELKG TRRD
Sbjct: 250 GYEGPLRYDLSEDNKQTIKPELTGPLGARLFDKAVSYSSIPGLEPVVLEFPELKGETRRD 309

Query: 325 YWLAIIREILYAHRFINKFQITGVQRDEVLSKAVLGILRLQAIQEISTANSVRCESLLMF 384
           YWLAII E+L  H F+ KF + G+QR+E L++A+LGI RLQA+QE+        ++LL+F
Sbjct: 310 YWLAIISEVLAVHTFLRKFNVFGLQREEALARAILGIARLQALQEMRNLPDDPYKNLLIF 369

Query: 385 NLCDQLPGGDLILETLANMSNLRELERTNKSVGGVGM--YSISAMAMVSNLGFVFGPSSS 442
           +L +Q+PGGD++LETLA  S  R   R + +     +   S     +VS+LG V+G ++S
Sbjct: 370 SLLEQVPGGDIVLETLAEFSTKRSTTRGDIARASRSILRESYETFDLVSDLGSVYGSTAS 429

Query: 443 NNSIEAGAGLVVG-----EIAVGEMSPLERTVKESRNSYKKVVQAQETVDGVKVDGIDTN 497
            N  +  + LVVG     E+AVG+++PLER VK+SR  YK V +AQ T+D VK++GIDTN
Sbjct: 430 MNFWKNSS-LVVGLVLSKELAVGDLTPLERAVKQSRQKYKVVEKAQATIDAVKIEGIDTN 488

Query: 498 LAVMKELLLPAMEVGRWLLSLAYWDDPLKSSVFCLVFTFIICRGWLGYALALLLIFFAIF 557
           +AVMKEL+LP       +  L YW+DP KS VF  + + II RGWLGY L + LIF AI 
Sbjct: 489 VAVMKELILPLSITATEIEKLRYWEDPYKSVVFLALASTIIFRGWLGYVLPVSLIFVAIG 548

Query: 558 MVLTRFLNQGKPVDEVKVIAPPPMNTMEQLLAVQNAISQAEQLIQDGNIFLLKLRGLLLT 617
           M+  R    GK    V V APP  NT+EQ+LAVQ+AIS  E LIQ  N+ LLKLR ++L+
Sbjct: 549 MLTRRQFRLGKLFGIVSVRAPPSSNTIEQILAVQDAISNLESLIQKVNVVLLKLRAIVLS 608

Query: 618 IFPQASDKFAVGLLLTGVDFDI 639
             PQA+ + A+ +L+      +
Sbjct: 609 GHPQATTEVAIAMLVIATVLAV 630


Plant protein of unknown function. Length = 682

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 642
PF04842683 DUF639: Plant protein of unknown function (DUF639) 100.0
PF06398 359 Pex24p: Integral peroxisomal membrane peroxin; Int 95.86
PF08372156 PRT_C: Plant phosphoribosyltransferase C-terminal; 90.23
PF11696 642 DUF3292: Protein of unknown function (DUF3292); In 82.76
>PF04842 DUF639: Plant protein of unknown function (DUF639); InterPro: IPR006927 The sequences in this family are plant proteins of unknown function Back     alignment and domain information
Probab=100.00  E-value=9.4e-243  Score=1963.87  Aligned_cols=601  Identities=58%  Similarity=0.936  Sum_probs=567.3

Q ss_pred             ccCCcCCCCCCCCCChHHHHHHHHhHHHhCCChHHHHHHhhhccccccCCcchhhhhhhhhhhhhhhhh-hhccCCCCCC
Q 006516           38 ERSPSAGRNWIQELSPLANIVVRRCSKILGISSSELQESFNAEASEAIKHPSRYARNFLEYCCFRTLAL-STQVTGHLAD  116 (642)
Q Consensus        38 ~~~~~~~~~~~~~LS~~An~vV~rcSrilg~s~~~Lq~~Fe~~~~~s~~~~~~yARnlvEyCcfraL~~-~~~~~~~L~D  116 (642)
                      +++|++.++++|+|||+||+||+|||||||+|++|||++||+++|+++|||+|||||||||||||||++ .+++||||+|
T Consensus        11 ~~~~~~~~~~i~~LS~~An~vV~rcSrilg~~~~~lq~~Fe~~~~~~~~~~~~yaR~lvEyCcfraL~~~~~~~~~~L~D   90 (683)
T PF04842_consen   11 ERSPSTTRSWIPELSPIANSVVERCSRILGVSGEKLQRIFEAEAPPSVKQPSNYARNLVEYCCFRALSRDSSDVHDHLSD   90 (683)
T ss_pred             CCCccccCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHhccCCccccchhHHHHHHHHHhhHHHHHhhhcccCccccc
Confidence            789999999999999999999999999999999999999999999999999999999999999999999 5699999999


Q ss_pred             cCccchhhHHHHhcCCCCCCCCCc------------cccCCCCccchhhhhhhccCCccccccchhhhhhHhhhcCCCCc
Q 006516          117 KKFRRLTYDVMLAWEVPAASSQPL------------LNVDGDATVGMEAFSRIAPAVPIIANVVISENLFEVLTSSTGGR  184 (642)
Q Consensus       117 ~~FrRLtFdmMLAWE~P~~~d~~~------------~~v~~~~tVG~eAF~RIAPavp~vADvit~hnlF~aLT~st~gR  184 (642)
                      ++|||||||||||||+|+++|+++            .+||+++|||||||+|||||||+|||+||+||||||||++||||
T Consensus        91 ~~FrRLtfdmMLAWe~P~~~~~~~~~~~~~k~~~~~~~Vd~~~tVG~eAF~rIAPavp~vADvit~hnlF~aLT~stg~R  170 (683)
T PF04842_consen   91 KAFRRLTFDMMLAWEAPYAEDQESNNESSGKESEMPLQVDEEPTVGEEAFVRIAPAVPGVADVITVHNLFEALTASTGGR  170 (683)
T ss_pred             hhhhHHHHHHHHHhcCCchhhhcccccccccccccceeccCCCccCHHHHHHhcccCcccccchhHHHHHHHHhcCCCCc
Confidence            999999999999999999999943            44899999999999999999999999999999999999999999


Q ss_pred             eehhhHHHHHHHHHHHHHHhhhccccccccccccCCCceEEEeeCCcCcccceeeecccccCcceecccceeeeeecccc
Q 006516          185 LQYSIFNKYITGLERAIKKMKTQSESSILSAIRSSRGEKILEVDGTVTTQPVLEHVGISTWPGRLTLTDHALYFEAHRVV  264 (642)
Q Consensus       185 L~f~~ydkYL~eLdkvik~~k~~~~~~~~~~~~L~~~E~IL~idGt~~tqPVl~hig~saWPGRLTLTn~ALYFEa~gv~  264 (642)
                      |||++|||||+|||||||++|+|++++.. +++|++||+|||||||++|||||||||+||||||||||||||||||+||+
T Consensus       171 L~f~~ydkYL~eLdk~ik~~k~~~~~~~~-~~~l~~~E~IL~idgt~~tqPVl~hig~saWPGRLTLTn~ALYFEa~gv~  249 (683)
T PF04842_consen  171 LHFPIYDKYLKELDKVIKSMKSQSTPSLS-SLELAEDEKILDIDGTATTQPVLQHIGISAWPGRLTLTNHALYFEAIGVV  249 (683)
T ss_pred             eeeHHHHHHHHHHHHHHHHHHhccCcccc-ccccCCCcEEEEecCCCCCCchhhccccccCCceeEeecceeeeeecccc
Confidence            99999999999999999999999875444 57999999999999999999999999999999999999999999999999


Q ss_pred             ccCcceEeeccccccccccccccCCCccccccceeEeecCCCCCCeEEEccCCCCCchhHHHHHHHHHHHHHHHHhhhcC
Q 006516          265 SYEKAKIYDLAEDLKQVVKPELTGPWGTRLFDKAVFYKSVSLSEPIILEFPELKGHTRRDYWLAIIREILYAHRFINKFQ  344 (642)
Q Consensus       265 ~y~ka~r~DLs~d~~qvvKp~~tGP~Ga~LFDkAV~ykS~s~sEp~vlEFpe~~g~~RRD~WLaiI~EIl~vHkFIrky~  344 (642)
                      +||||+|||||+|++|+|||++|||||+|||||||||||++++|||||||||||||+|||||||||+|||++|||||||+
T Consensus       250 sy~~a~r~DLs~d~~q~Vkp~~tGP~Ga~LFDkAV~ykS~s~sEpvvlEFpel~g~~RRD~WlAii~EVl~~HkFIrky~  329 (683)
T PF04842_consen  250 SYDKAVRYDLSKDLKQVVKPELTGPWGARLFDKAVMYKSSSLSEPVVLEFPELKGHTRRDYWLAIIREVLHVHKFIRKYN  329 (683)
T ss_pred             cCCCceEEECCCCccceecccccCCCcccccceeeEEecCCCCCceEEEccccCCCchHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcchhhHHHHHHHHHHHHHHHHHHHhhcCCCCcccchhhhcccCCCCccchhHhhhcccchhhhhccCCC--CCCCCc-
Q 006516          345 ITGVQRDEVLSKAVLGILRLQAIQEISTANSVRCESLLMFNLCDQLPGGDLILETLANMSNLRELERTNKS--VGGVGM-  421 (642)
Q Consensus       345 ~~~~~k~eals~AilGI~RlqA~qe~~~~~p~~p~~lL~Fsl~~~lP~GD~VLetLa~~~~l~~~~~~~~~--~~~~~~-  421 (642)
                      ++|+|||||||||+|||+||||+|||+|++|+||++||||||||++|+||+||||||+ ++++..+..+..  +....+ 
T Consensus       330 v~g~~k~eals~AilGI~RlqA~qe~~~i~p~~~k~lL~Fsl~~~lP~GD~VLetLa~-~~~~~~~~~~~~~~~~~~~~~  408 (683)
T PF04842_consen  330 VEGIQKWEALSRAILGIARLQAVQEMFHISPPHPKSLLQFSLADELPKGDLVLETLAN-SWLKRVSTRSPCDRSSSSQLR  408 (683)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCccceehhhhhhcCCCcccHHHHHHH-HhhhcccccCCcccCccchhc
Confidence            9999999999999999999999999999999999999999999999999999999997 235554433333  223334 


Q ss_pred             cchhHHHHHhhcCcccCCCCCC-cccccc---cceeeeeeeeccccHHHHHHHHHHhhhhhhhhcccccchhhccCccch
Q 006516          422 YSISAMAMVSNLGFVFGPSSSN-NSIEAG---AGLVVGEIAVGEMSPLERTVKESRNSYKKVVQAQETVDGVKVDGIDTN  497 (642)
Q Consensus       422 ~s~sa~~~l~~~g~~~~~~s~~-~~~~~~---~~~~v~~~~vg~~s~LE~Av~~s~~~~k~ve~aqATid~vkveGI~tN  497 (642)
                      .|+++...++++|+++...++. .+++.+   +.+..++++|||+++||+||+|||+++|+||+||||||||||||||+|
T Consensus       409 ~s~~~~~~v~~~g~v~~~~~~~~~~~~~~~~~g~v~~~~~~vg~~s~LE~Av~~s~~~~k~ve~AqATid~vkveGI~tN  488 (683)
T PF04842_consen  409 ESSSASQHVSDLGSVYGSSSSESFWKESSIVVGLVLSKEVVVGDTSSLERAVKQSRENSKKVEKAQATIDGVKVEGIDTN  488 (683)
T ss_pred             ccchhhhhhhhhhhhhccccccccccccccccccccchheeecCchHHHHHHHHHHHhhceehHHhhhHhHHhhcCCccH
Confidence            4899999999999988554433 221111   134455999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhHHHHHHHHhhhccccCcchhhHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhhhh-cCCCCcceEEEe
Q 006516          498 LAVMKELLLPAMEVGRWLLSLAYWDDPLKSSVFCLVFTFIICRGWLGYALALLLIFFAIFMVLTRFL-NQGKPVDEVKVI  576 (642)
Q Consensus       498 vav~kELl~P~~~~~~~l~~l~~We~P~kt~~Fl~~~~~iI~r~wl~Y~~p~~Ll~~a~~Ml~~R~~-~~g~~~~ev~V~  576 (642)
                      ||||||||+|++++++|||+|++||||+||++||++++|||||||++|+||++||++|++|+|+|+. ++|+.+++|+|+
T Consensus       489 vav~kELL~Pl~~i~~~~~~l~~We~P~kt~~Fl~~~~~iI~r~wl~Y~~p~~Ll~~a~~Ml~~r~~~~~g~~~~~v~V~  568 (683)
T PF04842_consen  489 VAVMKELLFPLIEIAKWLQKLASWEEPLKTLVFLALFLYIIYRGWLGYIFPAFLLFSAVFMLWLRYQGRLGKSFGEVTVR  568 (683)
T ss_pred             HHHHHhccccHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccceEEec
Confidence            9999999999999999999999999999999999999999999999999999999999999999997 899999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHhccCcchHHHHHHHHHHHHHhhhhh
Q 006516          577 APPPMNTMEQLLAVQNAISQAEQLIQDGNIFLLKLRGLLLTIFPQASDKFAVGLLLTGVDFDIC  640 (642)
Q Consensus       577 ~pP~~nT~eqilalQ~Ais~vE~~iQ~~NI~LLK~Rsills~~PqaT~~va~~Ll~~A~vl~v~  640 (642)
                      +|||+||||||+|+||||+|+|++||++||+|||+|||+||++|||||+||++|+++|++|+|+
T Consensus       569 ~pP~~nTvEqilalQ~Ais~~E~~iQ~~NI~LLKiRsllls~~PqaT~~Va~~Ll~~A~~Lavv  632 (683)
T PF04842_consen  569 DPPPKNTVEQILALQEAISQLEEYIQAANIVLLKIRSLLLSKFPQATNKVALALLGLAAVLAVV  632 (683)
T ss_pred             CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999986



>PF06398 Pex24p: Integral peroxisomal membrane peroxin; InterPro: IPR010482 Peroxisomes play diverse roles in the cell, compartmentalising many activities related to lipid metabolism and functioning in the decomposition of toxic hydrogen peroxide Back     alignment and domain information
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins Back     alignment and domain information
>PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query642
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-07
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 52.5 bits (125), Expect = 4e-07
 Identities = 62/479 (12%), Positives = 128/479 (26%), Gaps = 163/479 (34%)

Query: 5   SRTRNMLEGLVREGS--------------FKWLLGS-------RSSFDDEFEEMERSPSA 43
           S T  +   L+ +                +K+L+          S     + E +R    
Sbjct: 62  SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE-QRDRLY 120

Query: 44  G-------------------RNWIQELSPLANIVV---RRCSK----ILGISSSELQESF 77
                               R  + EL P  N+++       K    +    S ++Q   
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180

Query: 78  N-----------AEASEAIKHPSR-YARNFLEYCCFRTLALSTQVTGHLADKKFRRLTYD 125
           +                 ++   +   +    +      + + ++  H    + RRL   
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL--- 237

Query: 126 VMLAWEVPAASSQPLLNVDG--DATVGMEAF---SRIAPAVPIIANVVISENLFEVLTSS 180
            + +          LL +    +A     AF    +I         ++ +    +V    
Sbjct: 238 -LKSKPYENC----LLVLLNVQNAKA-WNAFNLSCKI---------LLTTRFK-QVTDFL 281

Query: 181 TGGRLQYSIFNKYITGLERAIKKMKTQSES-SILSAIRSSRGEKILEVDGTVTTQPVLEH 239
           +     +   + +   L        T  E  S+L         K L+        P  E 
Sbjct: 282 SAATTTHISLDHHSMTL--------TPDEVKSLLL--------KYLDCR--PQDLPR-EV 322

Query: 240 VGISTWPGRLTLTDHALYFEAHRVVSYEKAKIYDLAEDLKQVVKPELTGPWGTRLFDKAV 299
           +  +  P RL++                      +AE ++          W     DK  
Sbjct: 323 LTTN--PRRLSI----------------------IAESIRD--GLATWDNWKHVNCDKLT 356

Query: 300 FYKSVSLSEPIILEFPELKGHTRRDYW-LAIIREILYAHRFINKFQITGVQRDEVLSKAV 358
                SL+    LE  E     R+ +  L++                        +   +
Sbjct: 357 TIIESSLNV---LEPAEY----RKMFDRLSVFPP------------------SAHIPTIL 391

Query: 359 LGILRLQAIQE--ISTANSVRCESLLMFNLCD---QLPGGDLILETLANMSNLRELERT 412
           L ++    I+   +   N +   SL+     +    +P   + LE    + N   L R+
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP--SIYLELKVKLENEYALHRS 448


Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00