Citrus Sinensis ID: 006527

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-
MEEPKKFSTQPTAYTSNSLQTSFGTAPENRGTSHTVRMFPLDKLLNNDARPPTVSTGLPSSHLGRDSSSLALPRVEKPQVKLDGGSNGSSYVSQVQANASANHPLVNAPTWSVQPQSASSAKAVLENKVPNHIPVKLEGPADMSRTAPQAVRDQSFRPFISQTGNMPNVHQPLQGTNIVQAPQFGSNHGEIAKIVQKLLHPKLPQHPTWTPPSREYMSKAFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKLSNGKPLPPKYGRVMRSINTTKMPSNTSVIQSPSDKKFISVDQKVNNQQKITVNGSSGGSGALGSNSNDCDLKIHNIRATQGGNLVSSTKSKDQETSSGTYPSNVTKPLGVVPPPGDSHGPIQSTQVCESSTQLEKLASESKSEHPAISSETVSNHSAASQPSHNSQVVRTDLANSAEVSLKNSHDSSSTIKQDEEVVGRLNPVGNSVISSDALHNVQWIGDVLQIVDGKKFYQSCRIGGVTYKVKDHVLLHSSNNKLMPSKLQTMWEDTGTGSKWVMVNRCFFPGDLPEAVGCPCAPESNELYESNNESSVMAGLIRGPCEVLPPGKFKEENERLNHLGNEANKGRHPVFLCQWFYDELKGVFRPVSG
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccHHHcccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccEEEcccccEEccccEEEEEEEEccEEEEEccEEEEEcccccccHHHHHHccccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccEEEccccHHHHHHHHHHHcccccccccccEEEEEEEEEccccccccccc
ccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccHHHcccccccEEEEcccccccEEEEEccccccccHHccccccccccccccccccHHHHHHccccccccccccEEEEEEcccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccEEEccccccccEEEcccHHHccccccccccHHccHHHccEEEEcccEEEEcccEEEEEEEccEEEEEEccEEEEEcccccccHHHHHHHHHHcccccEEEEEccccccccccccccccccccccEEEEcccccEEEEEccccccEccccHHHHHHHHHHHHHccccccccccEEEEEEEEEccccccccccc
meepkkfstqptaytsnslqtsfgtapenrgtshtvrmfpldkllnndarpptvstglpsshlgrdssslalprvekpqvkldggsngssYVSQVQAnasanhplvnaptwsvqpqsassAKAVlenkvpnhipvklegpadmsrtapqavrdqsfrpfisqtgnmpnvhqplqgtnivqapqfgsnhGEIAKIVQKLlhpklpqhptwtppsreymskaFTCQICKLTANEVETVVLCDACEKGFHLKCLQMnnqkgiprggewhcmsclklsngkplppkygrvmrsinttkmpsntsviqspsdkkfISVDQKVnnqqkitvngssggsgalgsnsndcdlkihniratqggnlvsstkskdqetssgtypsnvtkplgvvpppgdshgpiqstqvcESSTQLEKLAsesksehpaissetvsnhsaasqpshnsqvvRTDLANsaevslknshdssstikqdeevvgrlnpvgnsvissdalhnvqWIGDVLQivdgkkfyqscriggvtykvkDHVLlhssnnklmpskLQTMWedtgtgskwvmvnrcffpgdlpeavgcpcapesnelyesnnesSVMAglirgpcevlppgkfkeeNERLNHlgneankgrhpvflCQWFYDElkgvfrpvsg
meepkkfstqptaytsnslqtsfgtapenrgtsHTVRMFPLDKLLNNDARPptvstglpsshlgrdssslalpRVEKPQVKLDGGSNGSSYVSQVQANASANHPLVNAPTWSVQPQSASSAKAVLENKVPnhipvklegpadMSRTAPQAVRDQSFRPFISQTGNMPNVHQPLQGTNIVQAPQFGSNHGEIAKIVQKLLHPKLPQHPTWTPPSREYMSKAFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKlsngkplppkYGRVMRSInttkmpsntsviqspsdKKFISVDQKVNNQQKitvngssggsgalGSNSNDCDLKIHNIratqggnlvsstkskdqetssgtypsnvtkpLGVVPPPGDSHGPIQSTQVCESSTQLEKLASESKSEHPAISSEtvsnhsaasqpshnsQVVRTDLANSAEVSlknshdssstikqdeevvgRLNPVGNSVISSDALHNVQWIGDVLQIVDGKKFYQSCRIGGVTYKVKDHVLLHssnnklmpskLQTMWEDTGTGSKWVMVNRCFFPGDLPEAVGCPCAPESNELYESNNESSVMAGLIRGPCEVLPPGKFKEENERLNHLgneankgrhpVFLCQWFYDELKgvfrpvsg
MEEPKKFSTQPTAYTSNSLQTSFGTAPENRGTSHTVRMFPLDKLLNNDARPPTVSTGLPSSHLGRDSSSLALPRVEKPQVKLDGGSNGSSYVSQVQANASANHPLVNAPTWSVQPQSASSAKAVLENKVPNHIPVKLEGPADMSRTAPQAVRDQSFRPFISQTGNMPNVHQPLQGTNIVQAPQFGSNHGEIAKIVQKLLHPKLPQHPTWTPPSREYMSKAFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKLSNGKPLPPKYGRVMRSINTTKMPSNTSVIQSPSDKKFISVDQKVNNQQKITVngssggsgalgsnsnDCDLKIHNIRATQGGNLVSSTKSKDQETSSGTYPSNVTKPLGVVPPPGDSHGPIQSTQVCESSTQLEKLASESKSEHPAISSETVSNHSAASQPSHNSQVVRTDLANSAEVSLKNSHDSSSTIKQDEEVVGRLNPVGNSVISSDALHNVQWIGDVLQIVDGKKFYQSCRIGGVTYKVKDHVLLHSSNNKLMPSKLQTMWEDTGTGSKWVMVNRCFFPGDLPEAVGCPCAPesnelyesnnessVMAGLIRGPCEVLPPGKFKEENERLNHLGNEANKGRHPVFLCQWFYDELKGVFRPVSG
*********************************************************************************************************************************************************************************IVQA*QFGSNHGEIAKIVQKLLHPKLPQHPTWTP*SREYMSKAFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKLS******************************************************************************************************************************************************************************************************LNPVGNSVISSDALHNVQWIGDVLQIVDGKKFYQSCRIGGVTYKVKDHVLLHSSNNKLMPSKLQTMWEDTGTGSKWVMVNRCFFPGDLPEAVGCPCA****************AGLIRGPCEVL*********************GRHPVFLCQWFYDELKGVF*****
**************************************************************************************************************************************************************************************************************************KAFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLK*************************************************************************************************************************************************************************************************************************QWIGDVLQIVDGKKFYQSCRIGGVTYKVKDHVLL***************WEDTGTGSKWVMVNRCFFPGDLPEAV*CPCAPESNELYESNNESSVMAGLIRGPCEVLPPGKF*****************RHPVFLCQWFYDELKGVFR****
***************SNSLQTSFGTAPENRGTSHTVRMFPLDKLLNNDARPPTVSTGLPSSHLGRDSSSLALPRVEKPQVKLDGGSNGSSYVSQVQANASANHPLVNAPT************AVLENKVPNHIPVKLEGPADMSRTAPQAVRDQSFRPFISQTGNMPNVHQPLQGTNIVQAPQFGSNHGEIAKIVQKLLHPKLPQHPTWTPPSREYMSKAFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKLSNGKPLPPKYGRVMRSINTTKM*********PSDKKFISVDQKVNNQQKITVNGSSGGSGALGSNSNDCDLKIHNIRATQGGNL****************PSNVTKPLGVVPPPG***************************************************VVRTDLAN*****************QDEEVVGRLNPVGNSVISSDALHNVQWIGDVLQIVDGKKFYQSCRIGGVTYKVKDHVLLHSSNNKLMPSKLQTMWEDTGTGSKWVMVNRCFFPGDLPEAVGCPCAPESNELYESNNESSVMAGLIRGPCEVLPPGKFKEENERLNHLGNEANKGRHPVFLCQWFYDELKGVFRPVSG
************************************************************************************************************************************************************************************************KIVQKLLHPKLPQHPTWTPPSREYMSKAFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKLSNGKPLPPKYGRVMRSINTTKMPSN***************************************************************************************************************************************************************DSSSTIKQDEEVVGRLNPVGNSVISSDALHNVQWIGDVLQIVDGKKFYQSCRIGGVTYKVKDHVLLHSSNNKLMPSKLQTMWEDTGTGSKWVMVNRCFFPGDLPEAVGCPCAPESNELYESNNESSVMAGLIRGPCEVLPPGKFKEENERLNHLGNEANKGRHPVFLCQWFYDELKGV******
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MEEPKKFSTQPTAYTSNSLQTSFGTAPENRGTSHTVRMFPLDKLLNNDARPPTVSTGLPSSHLGRDSSSLALPRVEKPQVKLDGGSNGSSYVSQVQANASANHPLVNAPTWSVQPQSASSAKAVLENKVPNHIPVKLEGPADMSRTAPQAVRDQSFRPFISQTGNMPNVHQPLQGTNIVQAPQFGSNHGEIAKIVQKLLHPKLPQHPTWTPPSREYMSKAFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKLSNGKPLPPKYGRVMRSINTTKMPSNTSVIQSPSDKKFISVDQKVNNQQKITVNGSSGGSGALGSNSNDCDLKIHNIRATQGGNLVSSTKSKDQETSSGTYPSNVTKPLGVVPPPGDSHGPIQSTQVCESSTQLEKLASESKSEHPAISSETVSNHSAASQPSHNSQVVRTDLANSAEVSLKNSHDSSSTIKQDEEVVGRLNPVGNSVISSDALHNVQWIGDVLQIVDGKKFYQSCRIGGVTYKVKDHVLLHSSNNKLMPSKLQTMWEDTGTGSKWVMVNRCFFPGDLPEAVGCPCAPESNELYESNNESSVMAGLIRGPCEVLPPGKFKEENERLNHLGNEANKGRHPVFLCQWFYDELKGVFRPVSG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query641 2.2.26 [Sep-21-2011]
Q5PNS0482 PHD finger protein At3g20 no no 0.223 0.296 0.520 7e-41
Q3LHL91658 Protein winged eye OS=Dro no no 0.154 0.059 0.323 0.0004
Q9UIF82168 Bromodomain adjacent to z yes no 0.088 0.026 0.4 0.0007
>sp|Q5PNS0|Y3228_ARATH PHD finger protein At3g20280 OS=Arabidopsis thaliana GN=At3g20280 PE=2 SV=1 Back     alignment and function desciption
 Score =  169 bits (428), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 76/146 (52%), Positives = 98/146 (67%), Gaps = 3/146 (2%)

Query: 180 QAPQFGSNHGEIAKIVQKLLHPKLPQHPTWTPPSREYMSKAFTCQICKLTANEVETVVLC 239
           Q   FG NH EIAKI+ K L P++ Q+P W PPSREYMS+A  CQIC++T NE++T+++C
Sbjct: 5   QTSSFGGNHTEIAKIIHKFLQPRVKQYPLWNPPSREYMSRAMACQICEVTINEMDTLLIC 64

Query: 240 DACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKLSNGKPLPPKYG--RVMRSINTTKMPS 297
           DACEK +HLKCLQ NN KG+P+  EWHC  C++  NGKP PP YG      +  T KMP 
Sbjct: 65  DACEKAYHLKCLQGNNMKGVPK-SEWHCSRCVQAFNGKPFPPTYGRATRAVATTTAKMPF 123

Query: 298 NTSVIQSPSDKKFISVDQKVNNQQKI 323
             + + S S KK   +D K N Q+ I
Sbjct: 124 RAAGVLSSSAKKIGPMDIKANQQKPI 149

Arabidopsis thaliana (taxid: 3702)
>sp|Q3LHL9|WGE_DROME Protein winged eye OS=Drosophila melanogaster GN=wge PE=1 SV=1 Back     alignment and function description
>sp|Q9UIF8|BAZ2B_HUMAN Bromodomain adjacent to zinc finger domain protein 2B OS=Homo sapiens GN=BAZ2B PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query641
255580768 892 conserved hypothetical protein [Ricinus 0.967 0.695 0.497 1e-177
224056409 798 predicted protein [Populus trichocarpa] 0.940 0.755 0.506 1e-173
356501576 830 PREDICTED: uncharacterized protein LOC10 0.981 0.757 0.486 1e-165
356553535 830 PREDICTED: uncharacterized protein LOC10 0.984 0.760 0.477 1e-159
357494725 874 PHD finger protein [Medicago truncatula] 0.985 0.723 0.425 1e-143
449463270 874 PREDICTED: uncharacterized protein LOC10 0.968 0.710 0.413 1e-129
449503219728 PREDICTED: uncharacterized LOC101224472 0.803 0.707 0.412 1e-100
222635456648 hypothetical protein OsJ_21107 [Oryza sa 0.656 0.649 0.315 2e-63
115467758662 Os06g0309000 [Oryza sativa Japonica Grou 0.656 0.635 0.315 2e-63
225898018629 hypothetical protein [Arabidopsis thalia 0.396 0.403 0.430 1e-52
>gi|255580768|ref|XP_002531205.1| conserved hypothetical protein [Ricinus communis] gi|223529207|gb|EEF31182.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  627 bits (1616), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 356/716 (49%), Positives = 444/716 (62%), Gaps = 96/716 (13%)

Query: 1   MEEPKKFSTQPTAYTSNSLQTSFGTAPENRGTSHTVRMFPLDKLLN-------------- 46
           ME+ KKF      YTS   Q SFG   E  G SH++R+F  DK  N              
Sbjct: 151 MEDSKKFPAPSATYTSQISQPSFGAMGEVCGPSHSIRVFSSDKPTNPLLPSGSHPTSSAL 210

Query: 47  -----------------NDARPPTVSTGLPSSHLGRDSSSLALPRVEKPQVKLDGGSNGS 89
                            ++ R  TVSTG+P+SH GRD S LA P+VEK   K +GGSNG+
Sbjct: 211 GHVLAVTSTSITHHSATSEVRASTVSTGIPNSHPGRDLSVLAGPKVEKTNFKPEGGSNGT 270

Query: 90  SYVSQVQANASANHPLVNAPTWSVQPQSASSAKAVLENKVPNHIPVKLEGPAD--MSRTA 147
           SY  QVQAN SAN PL+NAPTWS+Q  S  S KA  ENK  NH   K EG     MS+ A
Sbjct: 271 SYAPQVQANVSANQPLMNAPTWSLQSHSVPSNKATPENKALNHNFAKAEGATTLAMSQAA 330

Query: 148 PQAVRDQSFRPFISQ--TGNMPNVHQPLQGTNIVQAPQFGSNHGEIAKIVQKLLHPKLPQ 205
           PQA RDQ+FRP I+Q  + N+ +++QP+QG   VQ P F +NH EIAKIVQKLL PKLP+
Sbjct: 331 PQAGRDQAFRPLITQSPSANLQSINQPMQGVKYVQPPSFFNNHNEIAKIVQKLLQPKLPE 390

Query: 206 HPTWTPPSREYMSKAFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEW 265
           HPTWTPPSR+YM+K  TCQ+CK+ ANEVETVVLCDACEKGFHLKCL+  NQKGIPRGGEW
Sbjct: 391 HPTWTPPSRDYMNKPLTCQMCKVAANEVETVVLCDACEKGFHLKCLEAVNQKGIPRGGEW 450

Query: 266 HCMSCLKLSNGKPLPPKYGRVMRSINTTKMPSNTSVIQSPSDKKFISVDQKVNNQQKITV 325
           HC+ C  LSNGKPLPPKYGRVMRSI   K PSN+   Q   +KKF ++D+KV NQ+K+T 
Sbjct: 451 HCLRCTALSNGKPLPPKYGRVMRSITPPKGPSNSGGAQPSLEKKFETLDEKV-NQEKLTA 509

Query: 326 NGSSG-----GSGALGSNSNDCDLKIHNIRATQGGNLVSSTKSKDQETSSGTYPSNVTKP 380
           NGSSG      SG +    +  DLK    R   G +  SS K  DQ   +G  P+N T  
Sbjct: 510 NGSSGLRNPAVSGTVTCAESTSDLK----REINGNSTPSSVKDMDQGMCAG--PNNSTNS 563

Query: 381 LGVV---PPPGDSHG-PIQSTQVCESSTQLEKLASESKSEHPAISSETVSNHSAASQPSH 436
           LG V   P  G S G  IQ TQV  S  Q E+  SESK + PAI  ET++N    S+ SH
Sbjct: 564 LGAVSDYPSVGLSSGSSIQLTQVSGSCIQDERSVSESKLQSPAILCETITNKFENSESSH 623

Query: 437 NSQVV-RTDLANSAEVSLKNSHD-----------------SSSTIKQDEEVVGRLNPVGN 478
           N Q + + +L+++ E+ +K S +                 S+  +KQ+E+ +     VG+
Sbjct: 624 NLQDINQRELSSTGEIPMKTSQNNCMVDELESIRGHSDCPSTLDMKQNEQDIAHAKSVGS 683

Query: 479 SV----------ISSDALHNVQWIGDVLQIVDGKKFYQSCRIGGVTYKVKDHVLLHSSNN 528
           S           ++S  +H+V+WIG+VL++ DGK FY SC +GG TYKV+DH L  SS+ 
Sbjct: 684 SEANNKARMHAGMNSAGIHSVKWIGNVLKVADGKTFYVSCSVGGATYKVQDHALFRSSHE 743

Query: 529 KLMPSKLQ-----------------TMWEDTGTGSKWVMVNRCFFPGDLPEAVGCPCAPE 571
           KL+PSKLQ                  MWED  TGSKWV+V +C+FPGDLP+AVG PCAPE
Sbjct: 744 KLIPSKLQASDMRVIPSYVYCSSLLAMWEDVETGSKWVLVRQCYFPGDLPKAVGHPCAPE 803

Query: 572 SNELYESNNESSVMAGLIRGPCEVLPPGKFKEENERLNHLGNEANKGRHPVFLCQW 627
           SNE+YESN+ESS++A LI+GPC+VLPP KF+E  ER + LG E      PVFLC++
Sbjct: 804 SNEVYESNHESSILADLIQGPCQVLPPTKFQENAERRSQLGIEGKNESWPVFLCKY 859

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224056409|ref|XP_002298842.1| predicted protein [Populus trichocarpa] gi|222846100|gb|EEE83647.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356501576|ref|XP_003519600.1| PREDICTED: uncharacterized protein LOC100807139 [Glycine max] Back     alignment and taxonomy information
>gi|356553535|ref|XP_003545110.1| PREDICTED: uncharacterized protein LOC100783208 [Glycine max] Back     alignment and taxonomy information
>gi|357494725|ref|XP_003617651.1| PHD finger protein [Medicago truncatula] gi|355518986|gb|AET00610.1| PHD finger protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|449463270|ref|XP_004149357.1| PREDICTED: uncharacterized protein LOC101222588 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449503219|ref|XP_004161893.1| PREDICTED: uncharacterized LOC101224472 [Cucumis sativus] Back     alignment and taxonomy information
>gi|222635456|gb|EEE65588.1| hypothetical protein OsJ_21107 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|115467758|ref|NP_001057478.1| Os06g0309000 [Oryza sativa Japonica Group] gi|54290628|dbj|BAD62199.1| bactericidal permeability-increasing protein-like [Oryza sativa Japonica Group] gi|113595518|dbj|BAF19392.1| Os06g0309000 [Oryza sativa Japonica Group] gi|215768051|dbj|BAH00280.1| unnamed protein product [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|225898018|dbj|BAH30341.1| hypothetical protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query641
TAIR|locus:2008051629 AT1G50620 "AT1G50620" [Arabido 0.620 0.632 0.347 4.8e-55
TAIR|locus:2092414743 AT3G20280 "AT3G20280" [Arabido 0.397 0.343 0.392 1.3e-45
UNIPROTKB|E9PE19650 BPTF "Nucleosome-remodeling fa 0.341 0.336 0.210 8.6e-05
TAIR|locus:2096672 2176 MBD9 "methyl-CPG-binding domai 0.182 0.053 0.272 0.00019
FB|FBgn0029861 878 CG3815 [Drosophila melanogaste 0.185 0.135 0.279 0.00021
TAIR|locus:2169779349 ATXR6 "AT5G24330" [Arabidopsis 0.126 0.232 0.329 0.00033
TAIR|locus:2008051 AT1G50620 "AT1G50620" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 568 (205.0 bits), Expect = 4.8e-55, P = 4.8e-55
 Identities = 150/432 (34%), Positives = 218/432 (50%)

Query:    46 NNDARPPTVSTGLPSSHLGRDSSSLALPRVEKPQVKLDGGSNGSSYVSQVQANASANHPL 105
             N++ +    S     SH  R++S +   R+E+PQ K D  +      SQ  A  + N+  
Sbjct:   163 NSEMKASASSVNASGSHYVREASGITQARMERPQFKSDLHTG----TSQGPAVPAGNY-F 217

Query:   106 VNAPTWSVQPQSASSAKAVLENKVPNHIPVKLEGPADMSRTAPQAVRDQSFRPFISQTGN 165
              N  TWS QP S++S  +       + +PV    P+  SR     + D SFRPF+SQT  
Sbjct:   218 GNTTTWSAQPHSSTSTIS-FGTASDSKVPV----PSS-SR-----ISDPSFRPFMSQTP- 265

Query:   166 MPNVHQPLQGTNIVQAPQ-FGSN-HGEIAKIVQKLLHPKLPQHPTWTPPSREYMSKAFTC 223
              P     ++G    Q    FG+N H EIAK++ K+L P+  Q+  W PPSREYMSKA TC
Sbjct:   266 -PGAFPGMKGATYGQTSSPFGNNNHAEIAKLIHKVLQPRAKQNLLWNPPSREYMSKAMTC 324

Query:   224 QICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKLSNGKPLPPKY 283
             QIC+ T NE+ETV++CDACEKG+HLKCL  +N KG+P+  EWHC  C++L NGK  PPKY
Sbjct:   325 QICQGTINEIETVLICDACEKGYHLKCLHAHNIKGVPKS-EWHCSRCVQLYNGKSFPPKY 383

Query:   284 GRVMRSINTTKMPSNTSVIQSPSDKKFISVDQKVNNQQKITVXXXXXXXXXXXXXXXDC- 342
             GRVMRS  T KM S+T+ +Q P++K    +DQKV+ +    +               +  
Sbjct:   384 GRVMRSATTAKMSSSTAEVQLPAEKGVGKMDQKVSQEGMPHLETAKPTKDSAMEQTVEAE 443

Query:   343 DLKIHNIRATQGGNLVSSTKSKDQ---ETSSGTYPSNVTKPLGVVPPPGDSHGPIQSTQV 399
             D+ ++ I       +V +  +      E   G     V K +  +    D+   I     
Sbjct:   444 DVAMNPIVEKAMSEMVEAEGAAINPIVEAEDGAMNPIVEKAMSQIVEAEDA--AINQAVD 501

Query:   400 CESSTQLEKLASESKSEHPAISSETVSNHSAASQPS-HNSQVVRTDLAN---SAEVSLKN 455
                 TQ      +++S+ P   SE VS+    + P     +V+R D      SA+   KN
Sbjct:   502 ANFQTQAPTGNDDAESDDP---SEPVSHSETLNPPELEKKEVMRKDATERSVSADCQDKN 558

Query:   456 SHDSSSTIKQDE 467
             S   + +  Q+E
Sbjct:   559 SKIIAESSLQEE 570
GO:0003677 "DNA binding" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS
GO:0008270 "zinc ion binding" evidence=IEA
TAIR|locus:2092414 AT3G20280 "AT3G20280" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|E9PE19 BPTF "Nucleosome-remodeling factor subunit BPTF" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
TAIR|locus:2096672 MBD9 "methyl-CPG-binding domain 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
FB|FBgn0029861 CG3815 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
TAIR|locus:2169779 ATXR6 "AT5G24330" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query641
cd04370123 cd04370, BAH, BAH, or Bromo Adjacent Homology doma 2e-16
pfam01426120 pfam01426, BAH, BAH domain 3e-13
smart00439121 smart00439, BAH, Bromo adjacent homology domain 5e-09
pfam0062851 pfam00628, PHD, PHD-finger 3e-08
smart0024947 smart00249, PHD, PHD zinc finger 6e-08
>gnl|CDD|239835 cd04370, BAH, BAH, or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif) Back     alignment and domain information 
 Score = 75.5 bits (186), Expect = 2e-16
 Identities = 36/133 (27%), Positives = 58/133 (43%), Gaps = 14/133 (10%)

Query: 512 GVTYKVKDHVLLHSS----NNKLMPSKLQTMWEDTGTGSKWVMVNRCFFPGDLPEAVGCP 567
           G+TY+V D V +       ++    ++++ +WEDT  GSK V V   + P + P+ +   
Sbjct: 1   GITYEVGDSVYVEPDDSIKSDPPYIARIEELWEDTN-GSKQVKVRWFYRPEETPKGLSPF 59

Query: 568 CAPESNELYESNNESSVMAGLIRGPCEVLPPGKFKEENERLNHLGNEANKGRHPVFLCQW 627
                 EL+ S++   +    I G C+VL    F  E E L       NK     F C+ 
Sbjct: 60  A--LRRELFLSDHLDEIPVESIIGKCKVL----FVSEFEGLKQRP---NKIDTDDFFCRL 110

Query: 628 FYDELKGVFRPVS 640
            YD     F+ + 
Sbjct: 111 AYDPTTKEFKALE 123

BAH domains have first been described as domains found in the polybromo protein and Yeast Rsc1/Rsc2 (Remodeling of the Structure of Chromatin). They also occur in mammalian DNA methyltransferases and the MTA1 subunits of histone deacetylase complexes. A BAH domain is also found in Yeast Sir3p and in the origin receptor complex protein 1 (Orc1p), where it was found to interact with the N-terminal lobe of the silence information regulator 1 protein (Sir1p), confirming the initial hypothesis that BAH plays a role in protein-protein interactions. Length = 123
>gnl|CDD|216495 pfam01426, BAH, BAH domain Back     alignment and domain information
>gnl|CDD|214664 smart00439, BAH, Bromo adjacent homology domain Back     alignment and domain information
>gnl|CDD|201356 pfam00628, PHD, PHD-finger Back     alignment and domain information
>gnl|CDD|214584 smart00249, PHD, PHD zinc finger Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 641
cd04714121 BAH_BAHCC1 BAH, or Bromo Adjacent Homology domain, 99.95
cd04717121 BAH_polybromo BAH, or Bromo Adjacent Homology doma 99.94
cd04713146 BAH_plant_3 BAH, or Bromo Adjacent Homology domain 99.93
cd04715159 BAH_Orc1p_like BAH, or Bromo Adjacent Homology dom 99.93
cd04718148 BAH_plant_2 BAH, or Bromo Adjacent Homology domain 99.92
cd04721130 BAH_plant_1 BAH, or Bromo Adjacent Homology domain 99.91
cd04716122 BAH_plantDCM_I BAH, or Bromo Adjacent Homology dom 99.91
cd04370123 BAH BAH, or Bromo Adjacent Homology domain (also c 99.91
PF01426119 BAH: BAH domain; InterPro: IPR001025 The BAH (brom 99.9
smart00439120 BAH Bromo adjacent homology domain. 99.9
cd04709164 BAH_MTA BAH, or Bromo Adjacent Homology domain, as 99.87
cd04720179 BAH_Orc1p_Yeast BAH, or Bromo Adjacent Homology do 99.87
cd04712130 BAH_DCM_I BAH, or Bromo Adjacent Homology domain, 99.82
KOG1827 629 consensus Chromatin remodeling complex RSC, subuni 99.8
cd04710135 BAH_fungalPHD BAH, or Bromo Adjacent Homology doma 99.78
cd04760124 BAH_Dnmt1_I BAH, or Bromo Adjacent Homology domain 99.77
cd04708202 BAH_plantDCM_II BAH, or Bromo Adjacent Homology do 99.77
cd04719128 BAH_Orc1p_animal BAH, or Bromo Adjacent Homology d 99.75
KOG1886 464 consensus BAH domain proteins [Transcription] 99.7
cd04711137 BAH_Dnmt1_II BAH, or Bromo Adjacent Homology domai 99.65
KOG1246 904 consensus DNA-binding protein jumonji/RBP2/SMCY, c 99.02
KOG1244336 consensus Predicted transcription factor Requiem/N 98.99
KOG0825 1134 consensus PHD Zn-finger protein [General function 98.88
PF0062851 PHD: PHD-finger; InterPro: IPR019787 Zinc finger ( 98.73
KOG1512381 consensus PHD Zn-finger protein [General function 98.5
smart0024947 PHD PHD zinc finger. The plant homeodomain (PHD) f 98.45
KOG4299613 consensus PHD Zn-finger protein [General function 98.44
KOG12451404 consensus Chromatin remodeling complex WSTF-ISWI, 98.21
cd04718148 BAH_plant_2 BAH, or Bromo Adjacent Homology domain 98.18
KOG1973274 consensus Chromatin remodeling protein, contains P 98.08
KOG4443 694 consensus Putative transcription factor HALR/MLL3, 98.01
COG5034271 TNG2 Chromatin remodeling protein, contains PhD zi 97.81
KOG0955 1051 consensus PHD finger protein BR140/LIN-49 [General 97.76
KOG4323464 consensus Polycomb-like PHD Zn-finger protein [Gen 97.67
KOG0957707 consensus PHD finger protein [General function pre 97.64
KOG0954 893 consensus PHD finger protein [General function pre 97.51
KOG0383 696 consensus Predicted helicase [General function pre 97.49
COG5141669 PHD zinc finger-containing protein [General functi 97.4
COG5076371 Transcription factor involved in chromatin remodel 97.34
PF1383136 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A. 96.94
KOG0956 900 consensus PHD finger protein AF10 [General functio 96.93
KOG3554 693 consensus Histone deacetylase complex, MTA1 compon 95.24
KOG1473 1414 consensus Nucleosome remodeling factor, subunit NU 93.33
KOG0957 707 consensus PHD finger protein [General function pre 90.39
PF1444654 Prok-RING_1: Prokaryotic RING finger family 1 87.93
PF15446175 zf-PHD-like: PHD/FYVE-zinc-finger like domain 86.43
KOG4628348 consensus Predicted E3 ubiquitin ligase [Posttrans 86.13
KOG1473 1414 consensus Nucleosome remodeling factor, subunit NU 85.42
>cd04714 BAH_BAHCC1 BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins Back     alignment and domain information 
Probab=99.95  E-value=1.1e-28  Score=225.48  Aligned_cols=118  Identities=20%  Similarity=0.378  Sum_probs=104.6

Q ss_pred             CEEEEeccEEEEecCCCCCCc--hhhhhhhccCCCCceEEEeEeeccCCCCCCcCCCCCCCCCcccccccCcccccccce
Q 006527          512 GVTYKVKDHVLLHSSNNKLMP--SKLQTMWEDTGTGSKWVMVNRCFFPGDLPEAVGCPCAPESNELYESNNESSVMAGLI  589 (641)
Q Consensus       512 G~~~rvgD~VLl~s~~~~~~P--akI~~lWe~~~~g~~~v~v~WyYrPE~t~~~~gr~~~~~~nEvf~S~h~d~~~v~~I  589 (641)
                      |++||+||||+|+++++..+|  |||++||++. +|+++|+|+||||||||.+  ||...|.+||||+|+|+|++++.+|
T Consensus         1 ~~~~~vGD~V~v~~~~~~~~pyIgrI~~i~e~~-~g~~~~~v~WfyrPeEt~~--~~~~~~~~~EvF~S~~~d~~~~~~I   77 (121)
T cd04714           1 KEIIRVGDCVLFKSPGRPSLPYVARIESLWEDP-EGNMVVRVKWYYRPEETKG--GRKPNHGEKELFASDHQDENSVQTI   77 (121)
T ss_pred             CCEEEcCCEEEEeCCCCCCCCEEEEEEEEEEcC-CCCEEEEEEEEEcHHHccC--cccccCCCCceEecCCcccccHHHh
Confidence            789999999999999887888  9999999985 4889999999999999975  6677899999999999999999999


Q ss_pred             ecceEEeCCcchhhhhhhhhccCCCCCCCCCCeEEEEEEeeccCCccc
Q 006527          590 RGPCEVLPPGKFKEENERLNHLGNEANKGRHPVFLCQWFYDELKGVFR  637 (641)
Q Consensus       590 egkC~Vl~f~~y~~~~~r~~e~~~~~~~~~~p~F~Cr~~Yd~~~~~F~  637 (641)
                      .|||.|+++.+|.++..+..     ......++|+|+..||+.+..++
T Consensus        78 ~gkc~V~~~~ey~~~~~~~~-----~~~~~~d~~~Ce~~yn~~~~~~~  120 (121)
T cd04714          78 EHKCYVLTFAEYERLARVKK-----KPQDGVDFYYCAGTYNPDTGMLK  120 (121)
T ss_pred             CcccEEEehhHheecccccC-----CCCcCCCEEEEeccCCCCcCccc
Confidence            99999999999977766542     23456679999999999998775

BAHCC1 stands for BAH domain and coiled-coil containing 1. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
>cd04717 BAH_polybromo BAH, or Bromo Adjacent Homology domain, as present in polybromo and yeast RSC1/2 Back     alignment and domain information
>cd04713 BAH_plant_3 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function Back     alignment and domain information
>cd04715 BAH_Orc1p_like BAH, or Bromo Adjacent Homology domain, as present in the Schizosaccharomyces pombe homolog of Saccharomyces cerevisiae Orc1p and similar proteins Back     alignment and domain information
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function Back     alignment and domain information
>cd04721 BAH_plant_1 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function Back     alignment and domain information
>cd04716 BAH_plantDCM_I BAH, or Bromo Adjacent Homology domain, first copy present in DNA (Cytosine-5)-methyltransferases (DCM) from plants Back     alignment and domain information
>cd04370 BAH BAH, or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif) Back     alignment and domain information
>PF01426 BAH: BAH domain; InterPro: IPR001025 The BAH (bromo-adjacent homology) family contains proteins such as eukaryotic DNA (cytosine-5) methyltransferases IPR001525 from INTERPRO, the origin recognition complex 1 (Orc1) proteins, as well as several proteins involved in transcriptional regulation Back     alignment and domain information
>smart00439 BAH Bromo adjacent homology domain Back     alignment and domain information
>cd04709 BAH_MTA BAH, or Bromo Adjacent Homology domain, as present in MTA1 and similar proteins Back     alignment and domain information
>cd04720 BAH_Orc1p_Yeast BAH, or Bromo Adjacent Homology domain, as present in Orc1p, which again is part of the Saccharomyces cerevisiae Sir1-origin recognition complex, and as present in Sir3p Back     alignment and domain information
>cd04712 BAH_DCM_I BAH, or Bromo Adjacent Homology domain, as present in DNA (Cytosine-5)-methyltransferases (DCM) 1 Back     alignment and domain information
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>cd04710 BAH_fungalPHD BAH, or Bromo Adjacent Homology domain, as present in fungal proteins containing PHD domains Back     alignment and domain information
>cd04760 BAH_Dnmt1_I BAH, or Bromo Adjacent Homology domain, first copy present in DNA (Cytosine-5)-methyltransferases from Bilateria, Dnmt1 and similar proteins Back     alignment and domain information
>cd04708 BAH_plantDCM_II BAH, or Bromo Adjacent Homology domain, second copy present in DNA (Cytosine-5)-methyltransferases (DCM) from plants Back     alignment and domain information
>cd04719 BAH_Orc1p_animal BAH, or Bromo Adjacent Homology domain, as present in animal homologs of Saccharomyces cerevisiae Orc1p Back     alignment and domain information
>KOG1886 consensus BAH domain proteins [Transcription] Back     alignment and domain information
>cd04711 BAH_Dnmt1_II BAH, or Bromo Adjacent Homology domain, second copy present in DNA (Cytosine-5)-methyltransferases from Bilateria, Dnmt1 and similar proteins Back     alignment and domain information
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only] Back     alignment and domain information
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription] Back     alignment and domain information
>KOG0825 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG1512 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>smart00249 PHD PHD zinc finger Back     alignment and domain information
>KOG4299 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics] Back     alignment and domain information
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function Back     alignment and domain information
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics] Back     alignment and domain information
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only] Back     alignment and domain information
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only] Back     alignment and domain information
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG0957 consensus PHD finger protein [General function prediction only] Back     alignment and domain information
>KOG0954 consensus PHD finger protein [General function prediction only] Back     alignment and domain information
>KOG0383 consensus Predicted helicase [General function prediction only] Back     alignment and domain information
>COG5141 PHD zinc finger-containing protein [General function prediction only] Back     alignment and domain information
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription] Back     alignment and domain information
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A Back     alignment and domain information
>KOG0956 consensus PHD finger protein AF10 [General function prediction only] Back     alignment and domain information
>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG0957 consensus PHD finger protein [General function prediction only] Back     alignment and domain information
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1 Back     alignment and domain information
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain Back     alignment and domain information
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query641
1w4s_A174 Polybromo, polybromo 1 protein; BAH, bromo-associa 3e-21
3asl_A70 E3 ubiquitin-protein ligase UHRF1; histone reader 1e-09
2e6r_A92 Jumonji/ARID domain-containing protein 1D; PHD dom 1e-09
1f62_A51 Transcription factor WSTF; Zn-finger; NMR {Homo sa 2e-09
3shb_A77 E3 ubiquitin-protein ligase UHRF1; unmodified hist 2e-09
2e6s_A77 E3 ubiquitin-protein ligase UHRF2; PHD domain, str 3e-09
2kwj_A114 Zinc finger protein DPF3; acetyl-lysine, transcrip 4e-09
2kwj_A114 Zinc finger protein DPF3; acetyl-lysine, transcrip 3e-04
3av4_A 1330 DNA (cytosine-5)-methyltransferase 1; CXXC-type zi 4e-09
3ask_A226 E3 ubiquitin-protein ligase UHRF1; histone reader 8e-09
1xwh_A66 Autoimmune regulator; PHD domain, Zn binding domai 1e-08
2ysm_A111 Myeloid/lymphoid or mixed-lineage leukemia protein 2e-08
2ysm_A111 Myeloid/lymphoid or mixed-lineage leukemia protein 1e-06
2k16_A75 Transcription initiation factor TFIID subunit 3; p 3e-08
2yql_A56 PHD finger protein 21A; PHD domain, structural gen 6e-08
2puy_A60 PHD finger protein 21A; PHD finger, histone CODE, 8e-08
3swr_A 1002 DNA (cytosine-5)-methyltransferase 1; epigenetics, 9e-08
3v43_A112 Histone acetyltransferase KAT6A; MOZ, PHD finger, 1e-07
3v43_A112 Histone acetyltransferase KAT6A; MOZ, PHD finger, 5e-06
1mm2_A61 MI2-beta; PHD, zinc finger, protein scaffold, DNA 1e-07
2l5u_A61 Chromodomain-helicase-DNA-binding protein 4; CHD4, 3e-07
1fp0_A88 KAP-1 corepressor; PHD domain, C3HC4 type zinc bin 3e-07
2yt5_A66 Metal-response element-binding transcription facto 3e-07
1wev_A88 Riken cDNA 1110020M19; structural genomics, PHD do 5e-07
1we9_A64 PHD finger family protein; structural genomics, PH 7e-07
2ku3_A71 Bromodomain-containing protein 1; PHD finger, chro 8e-07
1wep_A79 PHF8; structural genomics, PHD domain, riken struc 1e-06
3kqi_A75 GRC5, PHD finger protein 2; metal-binding, zinc-fi 2e-06
2l43_A88 N-teminal domain from histone H3.3, linker, PHD1 f 5e-06
3ql9_A129 Transcriptional regulator ATRX; zinc finger, trans 1e-05
2ro1_A189 Transcription intermediary factor 1-beta; KAP, TIF 1e-05
1wee_A72 PHD finger family protein; structural genomics, PH 2e-05
2lbm_A142 Transcriptional regulator ATRX; metal binding prot 2e-05
2xb1_A105 Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; 3e-05
2ri7_A174 Nucleosome-remodeling factor subunit BPTF; zinc fi 3e-05
2kgg_A52 Histone demethylase jarid1A; PHD finger, histone m 5e-05
3o36_A184 Transcription intermediary factor 1-alpha; TRIM24, 2e-04
1wem_A76 Death associated transcription factor 1; structura 2e-04
2vpb_A65 Hpygo1, pygopus homolog 1; gene regulation, WNT si 2e-04
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B Length = 70 Back     alignment and structure
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 92 Back     alignment and structure
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2 Length = 51 Back     alignment and structure
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens} Length = 77 Back     alignment and structure
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 77 Back     alignment and structure
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* Length = 114 Back     alignment and structure
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* Length = 114 Back     alignment and structure
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A* Length = 1330 Back     alignment and structure
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens} Length = 226 Back     alignment and structure
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A Length = 66 Back     alignment and structure
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Length = 111 Back     alignment and structure
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Length = 111 Back     alignment and structure
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* Length = 75 Back     alignment and structure
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 56 Back     alignment and structure
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens} Length = 60 Back     alignment and structure
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A* Length = 1002 Back     alignment and structure
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A Length = 112 Back     alignment and structure
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A Length = 112 Back     alignment and structure
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A Length = 61 Back     alignment and structure
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens} Length = 61 Back     alignment and structure
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2 Length = 88 Back     alignment and structure
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus} Length = 66 Back     alignment and structure
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2 Length = 88 Back     alignment and structure
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 64 Back     alignment and structure
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens} Length = 71 Back     alignment and structure
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2 Length = 79 Back     alignment and structure
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} Length = 75 Back     alignment and structure
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens} Length = 88 Back     alignment and structure
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A Length = 129 Back     alignment and structure
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens} Length = 189 Back     alignment and structure
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 72 Back     alignment and structure
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A Length = 142 Back     alignment and structure
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens} Length = 105 Back     alignment and structure
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A* Length = 174 Back     alignment and structure
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A* Length = 52 Back     alignment and structure
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A Length = 184 Back     alignment and structure
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2 Length = 76 Back     alignment and structure
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A* Length = 65 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 641
d1we9a_64 g.50.1.2 (A:) PHD finger protein At5g26210 {Thale 3e-10
d1f62a_51 g.50.1.2 (A:) Williams-Beuren syndrome transcripti 2e-09
d1fp0a170 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF- 4e-09
d1mm2a_61 g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens 1e-08
d1weea_72 g.50.1.2 (A:) PHD finger protein At1g33420 {Thale 1e-07
d1weva_88 g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus mu 2e-07
d1wepa_79 g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus mus 6e-06
d1wema_76 g.50.1.2 (A:) Death associated transcription facto 4e-05
d1m4za_217 b.34.12.1 (A:) Origin-recognition complex protein 5e-04
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64 Back     information, alignment and structure

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At5g26210
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 53.9 bits (129), Expect = 3e-10
 Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 222 TCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLK 272
            C  C  +    E  + CD CE  FH KC+++   +      ++ C SC  
Sbjct: 8   QCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHI-KQYKCPSCSN 57
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Length = 51 Back     information, alignment and structure
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Length = 70 Back     information, alignment and structure
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Length = 61 Back     information, alignment and structure
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 72 Back     information, alignment and structure
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Length = 88 Back     information, alignment and structure
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Length = 79 Back     information, alignment and structure
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 76 Back     information, alignment and structure
>d1m4za_ b.34.12.1 (A:) Origin-recognition complex protein 120kDa subunit, Orc1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 217 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query641
d1m4za_217 Origin-recognition complex protein 120kDa subunit, 99.58
d1fp0a170 Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo 99.05
d1f62a_51 Williams-Beuren syndrome transcription factor, WST 98.97
d1mm2a_61 Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606 98.86
d1weva_88 PHD finger protein 22 {Mouse (Mus musculus) [TaxId 98.8
d1wesa_71 PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mu 98.54
d1weea_72 PHD finger protein At1g33420 {Thale cress (Arabido 98.51
d1we9a_64 PHD finger protein At5g26210 {Thale cress (Arabido 98.49
d1wepa_79 PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 98.43
d2pnxa151 Inhibitor of growth protein 4, Ing4 {Homo sapiens 98.24
d1wema_76 Death associated transcription factor 1, Datf1 (DI 98.07
d1wewa_78 Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop 97.92
d1iyma_55 EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45 84.74
d1wila_89 Hypothetical protein KIAA1045 {Human (Homo sapiens 82.09
>d1m4za_ b.34.12.1 (A:) Origin-recognition complex protein 120kDa subunit, Orc1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All beta proteins
fold: SH3-like barrel
superfamily: BAH domain
family: BAH domain
domain: Origin-recognition complex protein 120kDa subunit, Orc1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.58  E-value=1.1e-17  Score=129.61  Aligned_cols=130  Identities=15%  Similarity=0.084  Sum_probs=92.5

Q ss_pred             CCEEEEEEEEE--CCEEEEECCEEEEECCCCCCCC-HHHHHHHCCCCC----------------------CCEEEEEEEE
Q ss_conf             79167887998--7989974467997059999981-335441023799----------------------8428996741
Q 006527          500 DGKKFYQSCRI--GGVTYKVKDHVLLHSSNNKLMP-SKLQTMWEDTGT----------------------GSKWVMVNRC  554 (641)
Q Consensus       500 ~~k~~y~s~~i--~G~~irvgD~VLl~s~~~~~~P-akI~~lWe~~~~----------------------g~~~v~v~WY  554 (641)
                      ++++...+..+  ||..+++||+|||+++.....= +.|..+=.+...                      +++|.++.||
T Consensus        36 ~~~~~~~~~~r~~D~~e~~~GD~Vlvk~~~~~~~~v~iI~ei~~~~~~~~~e~~~~~~lr~~e~~~~~~~~~~~~~~~w~  115 (217)
T d1m4za_          36 RGAKTEHYLKRSSDGIKLGRGDSVVMHNEAAGTYSVYMIQELRLNTLNNVVELWALTYLRWFEVNPLAHYRQFNPDANIL  115 (217)
T ss_dssp             ----CEEEEEETTTCCEECTTCEEEEEETTTTEEEEEEEEEEEEETTTTEEEEEEEEEECGGGSCHHHHHHHHCHHHHHS
T ss_pred             CCCCCCEEEEEECCCEEEECCCEEEEECCCCCCCEEEEEEEECCCCCCCHHEEEEECCCCHHHHCCCHHHHHCCCCEEEE
T ss_conf             77777689887208838844889999479999735899966314764210003442002044434310111015422461


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCEEEECCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEECCCC
Q ss_conf             06999788679999888763102567652122330014199197521556664210388777798990897877625678
Q 006527          555 FFPGDLPEAVGCPCAPESNELYESNNESSVMAGLIRGPCEVLPPGKFKEENERLNHLGNEANKGRHPVFLCQWFYDELKG  634 (641)
Q Consensus       555 YrPE~t~~~~gr~~~~~~nEvf~S~h~d~~~v~~IegkC~Vl~f~~y~~~~~r~~e~~~~~~~~~~p~F~CR~~Yd~~~~  634 (641)
                      ++|+++-+. +++....+||||+|+|+|++.+.+|.|||.|+.+.+|..+..         ......+||||+.||..++
T Consensus       116 ~~p~e~~~~-k~r~~~~~~ElflT~~~d~i~~~~I~~k~~V~s~~ef~~~~~---------~~~~~~~F~cr~~~D~~~~  185 (217)
T d1m4za_         116 NRPLNYYNK-LFSETANKNELYLTAELAELQLFNFIRVANVMDGSKWEVLKG---------NVDPERDFTVRYICEPTGE  185 (217)
T ss_dssp             CCCHHHHHH-HHHHHSCTTEEEEEEEEEEECGGGEEEEEEEECHHHHHHHGG---------GCCTTTEEEEEEECCTTSC
T ss_pred             CCCHHHHHH-CCCCCCCCCEEEECCCCCEEEHHHEEEEEEEECHHHHCCHHH---------CCCCCCEEEEEEEECCCCC
T ss_conf             581454311-100116755057638535005454033579952899300021---------1577975999989758878


Q ss_pred             CCCCC
Q ss_conf             33457
Q 006527          635 VFRPV  639 (641)
Q Consensus       635 ~F~pi  639 (641)
                      .|.+|
T Consensus       186 ~f~~i  190 (217)
T d1m4za_         186 KFVDI  190 (217)
T ss_dssp             CCEEC
T ss_pred             CEEEC
T ss_conf             04664
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]} Back     information, alignment and structure
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Back     information, alignment and structure
>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure