Citrus Sinensis ID: 006529

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-

MKSRTRSTSATTAIVTFVVLLLIHGSHSFYLPGVAPQDFVKGDELYVKVNKLTSTKTQLPYSYYSIPYCRPKKIVDSAENLGEVLRGDRIENSPYFKMREPQMCNVICRLILDAKTAKAFKEKIDDEYRVNMILDNLPLVFPIRRLDQESPTVYQLGFHVGLKGQYTGTKDEKYFIHNHLAFTVKYHRDIQTDYARIVGFEVKPFSVKHEYEGNWNEKTRLTTCDPHSKHTVVNSNTPQEVAENKEIIFTYDVEFQESDVKWASRWDAYLLMSDDQIHWFSIVNSLMIVLFLSGMVAMIMLRTLYRDISKYNELETQEEAQEETGWKLVHGDVFRPPTNSDLLCVYVGTGVQFFGMMLVTMIFALLGFLSPSNRGGLMTAMLLLWVFMGLFAGYASARLYKLFKGTEWKRIAFRTAITFPGIVSAIFFVLNALIWGQKSSGAVPFGTMFALIVLWFGISVPLVYVGSFVGFKKPAIEDPVKTNKIPRQIPEQAWYMNPIFSILIGGILPFGAVFIELFFILTSIWLNQFYYIFGFLFLVFVILIVTCAEITIVLCYFQLCSEDYQWWWRSYLTSGSSALYLFLYATFYFFTKLEITKLVSGILYFGYMLIASYAFFVLTGTIGFYACFWFTRLIYSSVKID

ccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEEEEEEEcccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHEEEEEccccEEEEEEEccccccEEEEccEEEEEEccccccccccEEEEEEEEEEEEEccccccccEEEEEEEEEEEEEEcccccccccccccccccccccccccccccccccccccEEEEEEEEEEEccccccccHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHcccEEEEccccccccccccEEEEEccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEHHccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccccHHcHHccccccccccccccccccccccccccccccHHHHccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEccccHHHHHHHHHHHHEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc

ccccccccHHHHHHHHHHHHHHHcccccEEccccccccccccccEEEEEEEEccccccccEEEEEccccccccccccHHHHHHHHcccccccccEEEEcccccEEEEEEccccHHHHHHHHHHHHHHcEEEEEEccccEEEEEEccccccccccccccEcccEccccccccccEEEEEEEEEEEEEEcccccccEEEEEEEEEEcEEEcccccccccccccccccccccccccccccccEcccccEEEEEEEEEEEcccccHHHHHHHHHccccccEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHccEEEEcccccccccccEEEEEEcHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccEEEHHHHHcccccccccccccccccccccccccccccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc

mksrtrstsatTAIVTFVVLLLIHgshsfylpgvapqdfvkgdeLYVKVNKLtstktqlpysyysipycrpkkivDSAENLgevlrgdrienspyfkmrepQMCNVICRLILDAKTAKAFKEKIDDEYRVNmildnlplvfpirrldqesptvyqlgfhvglkgqytgtkdeKYFIHNHLAFTVKYHRDIQTDYARIVgfevkpfsvkheyegnwnektrlttcdphskhtvvnsntpqevaenkeIIFTYDVEFQESDVKWASRWDAYLLMSDDQIHWFSIVNSLMIVLFLSGMVAMIMLRTLYRDISKYNELETQEEAQEEtgwklvhgdvfrpptnsdllcVYVGTGVQFFGMMLVTMIFALLGflspsnrggLMTAMLLLWVFMGLFAGYASARLYKLFKGTEWKRIAFRTAITFPGIVSAIFFVLNALIWgqkssgavpfGTMFALIVLWFGISVPLVYVGsfvgfkkpaiedpvktnkiprqipeqawymnpifsiliggilpfGAVFIELFFILTSIWLNQFYYIFGFLFLVFVILIVTCAEITIVLCYFQLCSEDYQWWWRSYLTSGSSALYLFLYATFYFFTKLEITKLVSGILYFGYMLIASYAFFVLTGTIGFYACFWFTRLIYSSVKID

mksrtrstsattaIVTFVVLLLIHGSHSFYLPGVAPQDFVKGDELYVKVNKltstktqlpysyysipycrPKKIVDSAENLGEVLRGDRIENSPYFKMREPQMCNVICRLILDAKTAKAFKekiddeyrvnMILDNLPLVFPIRRLDQESPTVYQLGFHVGLKGQYTGTKDEKYFIHNHLAFTVKYHRDIQTDYARIVGFEVKPFSVKHeyegnwnektrlttcdphskhtvvnsntpqevaeNKEIIFTYDVEFQESDVKWASRWDAYLLMSDDQIHWFSIVNSLMIVLFLSGMVAMIMLRTLYRDISKYNELETQEEAQEETGWKLVHGDVFRPPTNSDLLCVYVGTGVQFFGMMLVTMIFALLGFLSPSNRGGLMTAMLLLWVFMGLFAGYASARLYKLFKGTEWKRIAFRTAITFPGIVSAIFFVLNALIWGQKSSGAVPFGTMFALIVLWFGISVPLVYVGSFVGfkkpaiedpvktnkIPRQIPEQAWYMNPIFSILIGGILPFGAVFIELFFILTSIWLNQFYYIFGFLFLVFVILIVTCAEITIVLCYFQLCSEDYQWWWRSYLTSGSSALYLFLYATFYFFTKLEITKLVSGILYFGYMLIASYAFFVLTGTIGFYACFWFTRLIYSSVKID

MKsrtrstsattaIVTFVVLLLIHGSHSFYLPGVAPQDFVKGDELYVKVNKLTSTKTQLPYSYYSIPYCRPKKIVDSAENLGEVLRGDRIENSPYFKMREPQMCNVICRLILDAKTAKAFKEKIDDEYRVNMILDNLPLVFPIRRLDQESPTVYQLGFHVGLKGQYTGTKDEKYFIHNHLAFTVKYHRDIQTDYARIVGFEVKPFSVKHEYEGNWNEKTRLTTCDPHSKHTVVNSNTPQEVAENKEIIFTYDVEFQESDVKWASRWDAYLLMSDDQIHWFSIVNSLMIVLFLSGMVAMIMLRTLYRDISKYNeletqeeaqeetGWKLVHGDVFRPPTNSDLLCVYVGTGVQFFGMMLVTMIFALLGFLSPSNRGGLMTAMLLLWVFMGLFAGYASARLYKLFKGTEWKRIAFRTAITFPGIVSAIFFVLNALIWGQKSSGAVPFGTMFALIVLWFGISVPLVYVGSFVGFKKPAIEDPVKTNKIPRQIPEQAWYMNPIFSILIGGILPFGAVFIELFFILTSIWLNQfyyifgflflvfvilivTCAEITIVLCYFQLCSEDYQWWWRSYLTSGSSalylflyatfyfftKLEITKLVSGILYFGYMLIASYAFFVLTGTIGFYACFWFTRLIYSSVKID

**********TTAIVTFVVLLLIHGSHSFYLPGVAPQDFVKGDELYVKVNKLTSTKTQLPYSYYSIPYCRPKKIVDSAENLGEVLRGDRIENSPYFKMREPQMCNVICRLILDAKTAKAFKEKIDDEYRVNMILDNLPLVFPIRRLDQESPTVYQLGFHVGLKGQYTGTKDEKYFIHNHLAFTVKYHRDIQTDYARIVGFEVKPFSVKHEYEGNWNEKTRLTTCD****************AENKEIIFTYDVEFQESDVKWASRWDAYLLMSDDQIHWFSIVNSLMIVLFLSGMVAMIMLRTLYRDISKYNELE*******ETGWKLVHGDVFRPPTNSDLLCVYVGTGVQFFGMMLVTMIFALLGFLSPSNRGGLMTAMLLLWVFMGLFAGYASARLYKLFKGTEWKRIAFRTAITFPGIVSAIFFVLNALIWGQKSSGAVPFGTMFALIVLWFGISVPLVYVGSFVGFKKPAIEDPVKTNKIPRQIPEQAWYMNPIFSILIGGILPFGAVFIELFFILTSIWLNQFYYIFGFLFLVFVILIVTCAEITIVLCYFQLCSEDYQWWWRSYLTSGSSALYLFLYATFYFFTKLEITKLVSGILYFGYMLIASYAFFVLTGTIGFYACFWFTRLIYSSV***

*************IVTFVVLLLIHGSHSFYLPGVAPQDFVKGDELYVKVNKLTSTKTQLPYSYYSIPYC***************LRGDRIENSPYFKMREPQMCNVICRLILDAKTAKAFKEKIDDEYRVNMILDNLPLVFPIRRLDQESPTVYQLGFHVGLKGQYTGTKDEKYFIHNHLAFTVKYHRDIQTDYARIVGFEVKPFSVKHEYEGNWNEKTRLTTCDPH***********QEVAENKEIIFTYDVEFQESDVKWASRWDAYLLMSDDQIHWFSIVNSLMIVLFLSGMVAMIMLRTLYRDIS**************TGWKLVHGDVFRPPTNSDLLCVYVGTGVQFFGMMLVTMIFALLGFLSPSNRGGLMTAMLLLWVFMGLFAGYASARLYKLFKGTEWKRIAFRTAITFPGIVSAIFFVLNALIWGQKSSGAVPFGTMFALIVLWFGISVPLVYVGSFVGFKKPAIEDPVKTNKIPRQIPEQAWYMNPIFSILIGGILPFGAVFIELFFILTSIWLNQFYYIFGFLFLVFVILIVTCAEITIVLCYFQLCSEDYQWWWRSYLTSGSSALYLFLYATFYFFTKLEITKLVSGILYFGYMLIASYAFFVLTGTIGFYACFWFTRLIYSSVKID

**********TTAIVTFVVLLLIHGSHSFYLPGVAPQDFVKGDELYVKVNKLTSTKTQLPYSYYSIPYCRPKKIVDSAENLGEVLRGDRIENSPYFKMREPQMCNVICRLILDAKTAKAFKEKIDDEYRVNMILDNLPLVFPIRRLDQESPTVYQLGFHVGLKGQYTGTKDEKYFIHNHLAFTVKYHRDIQTDYARIVGFEVKPFSVKHEYEGNWNEKTRLTTCDPHSKHTVVNSNTPQEVAENKEIIFTYDVEFQESDVKWASRWDAYLLMSDDQIHWFSIVNSLMIVLFLSGMVAMIMLRTLYRDISKYNELE*********GWKLVHGDVFRPPTNSDLLCVYVGTGVQFFGMMLVTMIFALLGFLSPSNRGGLMTAMLLLWVFMGLFAGYASARLYKLFKGTEWKRIAFRTAITFPGIVSAIFFVLNALIWGQKSSGAVPFGTMFALIVLWFGISVPLVYVGSFVGFKKPAIEDPVKTNKIPRQIPEQAWYMNPIFSILIGGILPFGAVFIELFFILTSIWLNQFYYIFGFLFLVFVILIVTCAEITIVLCYFQLCSEDYQWWWRSYLTSGSSALYLFLYATFYFFTKLEITKLVSGILYFGYMLIASYAFFVLTGTIGFYACFWFTRLIYSSVKID

*******TSATTAIVTFVVLLLIHGSHSFYLPGVAPQDFVKGDELYVKVNKLTSTKTQLPYSYYSIPYCRPKKIVDSAENLGEVLRGDRIENSPYFKMREPQMCNVICRLILDAKTAKAFKEKIDDEYRVNMILDNLPLVFPIRRLDQESPTVYQLGFHVGLKGQYTGTKDEKYFIHNHLAFTVKYHRDIQTDYARIVGFEVKPFSVKHEYE****EKTRLTTCDPHSKHTVVNSNTPQEVAENKEIIFTYDVEFQESDVKWASRWDAYLLMSDDQIHWFSIVNSLMIVLFLSGMVAMIMLRTLYRDISKYNELETQEEAQEETGWKLVHGDVFRPPTNSDLLCVYVGTGVQFFGMMLVTMIFALLGFLSPSNRGGLMTAMLLLWVFMGLFAGYASARLYKLFKGTEWKRIAFRTAITFPGIVSAIFFVLNALIWGQKSSGAVPFGTMFALIVLWFGISVPLVYVGSFVGFKKPAIEDPVKTNKIPRQIPEQAWYMNPIFSILIGGILPFGAVFIELFFILTSIWLNQFYYIFGFLFLVFVILIVTCAEITIVLCYFQLCSEDYQWWWRSYLTSGSSALYLFLYATFYFFTKLEITKLVSGILYFGYMLIASYAFFVLTGTIGFYACFWFTRLIYSSVKID

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SSSSSSSSSSSSSiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii

SSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii

SSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		641	2.2.26 [Sep-21-2011]
Q4KLL4		643	Transmembrane 9 superfami	yes	no	0.957	0.954	0.505	0.0
Q5RDY2		642	Transmembrane 9 superfami	yes	no	0.951	0.950	0.504	0.0
Q8BH24		643	Transmembrane 9 superfami	yes	no	0.957	0.954	0.503	0.0
Q92544		642	Transmembrane 9 superfami	yes	no	0.951	0.950	0.503	0.0
A5D7E2		642	Transmembrane 9 superfami	yes	no	0.960	0.959	0.5	0.0
Q55FP0		641	Putative phagocytic recep	yes	no	0.965	0.965	0.516	0.0
Q99805		663	Transmembrane 9 superfami	no	no	0.939	0.907	0.468	1e-165
Q66HG5		663	Transmembrane 9 superfami	no	no	0.932	0.901	0.465	1e-165
P58021		662	Transmembrane 9 superfami	no	no	0.932	0.903	0.468	1e-165
Q5R8Y6		663	Transmembrane 9 superfami	no	no	0.939	0.907	0.466	1e-164

>sp\|Q4KLL4\|TM9S4_RAT Transmembrane 9 superfamily member 4 OS=Rattus norvegicus GN=Tm9sf4 PE=2 SV=1	Back alignment and function desciption

 Score =  653 bits (1685), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/641 (50%), Positives = 449/641 (70%), Gaps = 27/641 (4%)

Query: 18  VVLLLIHGSHSFYLPGVAPQDFVKGDELYVKVNKLTSTKTQLPYSYYSIPYCRPKKIVDS 77
           ++L L     +FY+PGVAP +F + D + +K  KLTS++TQLPY YYS+P+C+P KI   
Sbjct: 13  LLLCLTCKGSTFYVPGVAPINFHQNDPVEIKAVKLTSSRTQLPYEYYSLPFCQPNKITYK 72

Query: 78  AENLGEVLRGDRIENSPY-FKMREPQMCNVIC-----RLILDAKTAKAFKEKIDDEYRVN 131
           AENLGEVLRGDRI N+P+   M   + C V+C      +IL  + ++   E+I +EY V+
Sbjct: 73  AENLGEVLRGDRIVNTPFQVLMNSEKKCEVLCGQSNKPVILTVEQSRLVAERITEEYYVH 132

Query: 132 MILDNLPL-----VFPIRRLDQESPTVYQLGFHVGLKGQYTGTKDEKYFIHNHLAFTVKY 186
           +I DNLP+     ++   R   +      + F  G +  +T     K ++HNHL+F + Y
Sbjct: 133 LIADNLPVATRLELYSSNRDSDDKKKEKDVQFEHGYRLGFTDVN--KIYLHNHLSFILYY 190

Query: 187 HR-DIQTDYA---RIVGFEVKPFSVKHEYEGNWNEKTRLTTCDPHSKHTVVNSNTPQEVA 242
           HR D + D     R+V FEV P S++ E +   +EK+  T   P   +++     PQE+ 
Sbjct: 191 HREDTEEDQEHTYRVVRFEVIPQSIRLE-DLKIDEKSSCTL--PEGANSL-----PQEID 242

Query: 243 ENKE--IIFTYDVEFQESDVKWASRWDAYLLMSDDQIHWFSIVNSLMIVLFLSGMVAMIM 300
             KE  + FTY V ++ESD+KWASRWD YL MSD QIHWFSI+NS+++V FLSG+++MI+
Sbjct: 243 PTKENQLYFTYSVHWEESDIKWASRWDTYLTMSDVQIHWFSIINSVVVVFFLSGILSMII 302

Query: 301 LRTLYRDISKYNELETQEEAQEETGWKLVHGDVFRPPTNSDLLCVYVGTGVQFFGMMLVT 360
           +RTL +DI+ YN+ +  E+  EE+GWKLVHGDVFRPP    +L   +G+G+Q F M+L+ 
Sbjct: 303 IRTLRKDIANYNKEDDIEDTMEESGWKLVHGDVFRPPQYPMILSSLLGSGIQLFCMILIV 362

Query: 361 MIFALLGFLSPSNRGGLMTAMLLLWVFMGLFAGYASARLYKLFKGTEWKRIAFRTAITFP 420
           +  A+LG LSPS+RG LMT    L++FMG+F G+++ RLY+  KG  WK+ AF TA  +P
Sbjct: 363 IFVAMLGMLSPSSRGALMTTACFLFMFMGVFGGFSAGRLYRTLKGHRWKKGAFCTATLYP 422

Query: 421 GIVSAIFFVLNALIWGQKSSGAVPFGTMFALIVLWFGISVPLVYVGSFVGFKKPAIEDPV 480
           G+V  I FVLN  IWG+ SSGAVPF TM AL+ +WFGIS+PLVY+G + GF+K   ++PV
Sbjct: 423 GVVFGICFVLNCFIWGKHSSGAVPFPTMVALLCMWFGISLPLVYLGYYFGFRKQPYDNPV 482

Query: 481 KTNKIPRQIPEQAWYMNPIFSILIGGILPFGAVFIELFFILTSIWLNQFYYIFGFLFLVF 540
           +TN+IPRQIPEQ WYMN    IL+ GILPFGA+FIELFFI ++IW NQFYY+FGFLFLVF
Sbjct: 483 RTNQIPRQIPEQRWYMNRFVGILMAGILPFGAMFIELFFIFSAIWENQFYYLFGFLFLVF 542

Query: 541 VILIVTCAEITIVLCYFQLCSEDYQWWWRSYLTSGSSALYLFLYATFYFFTKLEITKLVS 600
           +IL+V+C++I+IV+ YFQLC+EDY+WWWR++L SG SA Y+ +YA FYF  KL+I + + 
Sbjct: 543 IILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEFIP 602

Query: 601 GILYFGYMLIASYAFFVLTGTIGFYACFWFTRLIYSSVKID 641
            +LYFGY  +   +F++LTGTIGFYA + F R IY++VKID
Sbjct: 603 SLLYFGYTTLMVLSFWLLTGTIGFYAAYMFVRKIYAAVKID 643

Rattus norvegicus (taxid: 10116)

>sp\|Q5RDY2\|TM9S4_PONAB Transmembrane 9 superfamily member 4 OS=Pongo abelii GN=TM9SF4 PE=2 SV=1	Back alignment and function description

>sp\|Q8BH24\|TM9S4_MOUSE Transmembrane 9 superfamily member 4 OS=Mus musculus GN=Tm9sf4 PE=2 SV=1	Back alignment and function description

>sp\|Q92544\|TM9S4_HUMAN Transmembrane 9 superfamily member 4 OS=Homo sapiens GN=TM9SF4 PE=1 SV=2	Back alignment and function description

>sp\|A5D7E2\|TM9S4_BOVIN Transmembrane 9 superfamily member 4 OS=Bos taurus GN=TM9SF4 PE=2 SV=2	Back alignment and function description

>sp\|Q55FP0\|PHG1A_DICDI Putative phagocytic receptor 1a OS=Dictyostelium discoideum GN=phg1a PE=2 SV=1	Back alignment and function description

>sp\|Q99805\|TM9S2_HUMAN Transmembrane 9 superfamily member 2 OS=Homo sapiens GN=TM9SF2 PE=1 SV=1	Back alignment and function description

>sp\|Q66HG5\|TM9S2_RAT Transmembrane 9 superfamily member 2 OS=Rattus norvegicus GN=Tm9sf2 PE=2 SV=1	Back alignment and function description

>sp\|P58021\|TM9S2_MOUSE Transmembrane 9 superfamily member 2 OS=Mus musculus GN=Tm9sf2 PE=2 SV=1	Back alignment and function description

>sp\|Q5R8Y6\|TM9S2_PONAB Transmembrane 9 superfamily member 2 OS=Pongo abelii GN=TM9SF2 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		641
449455513		642	PREDICTED: transmembrane 9 superfamily m	0.996	0.995	0.861	0.0
255548734		645	Endosomal P24A protein precursor, putati	0.995	0.989	0.881	0.0
224089368		642	predicted protein [Populus trichocarpa]	0.998	0.996	0.870	0.0
224141971		639	predicted protein [Populus trichocarpa]	0.992	0.995	0.871	0.0
357437169		637	Transmembrane 9 superfamily protein memb	0.985	0.992	0.877	0.0
356564007		637	PREDICTED: transmembrane 9 superfamily m	0.982	0.989	0.884	0.0
225430488		638	PREDICTED: transmembrane 9 superfamily m	0.976	0.981	0.877	0.0
30683350		648	endomembrane family protein 70 [Arabidop	1.0	0.989	0.858	0.0
356552408		637	PREDICTED: transmembrane 9 superfamily m	0.964	0.970	0.896	0.0
297811193		648	hypothetical protein ARALYDRAFT_909044 [	0.978	0.967	0.872	0.0

>gi\|449455513\|ref\|XP_004145497.1\| PREDICTED: transmembrane 9 superfamily member 4-like [Cucumis sativus] gi\|449485197\|ref\|XP_004157096.1\| PREDICTED: transmembrane 9 superfamily member 4-like [Cucumis sativus]	Back alignment and taxonomy information

 Score = 1165 bits (3015), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 552/641 (86%), Positives = 600/641 (93%), Gaps = 2/641 (0%)

Query: 3   SRTRSTSATTAIVTFVVLLLIHGSHSFYLPGVAPQDFVKGDELYVKVNKLTSTKTQLPYS 62
           + TRS+S     V  ++L LIHG  SFYLPGVAP+DF KGDEL VKVNKLTSTKTQLPYS
Sbjct: 2   ATTRSSSIRNFFVAAILLFLIHGVSSFYLPGVAPEDFEKGDELKVKVNKLTSTKTQLPYS 61

Query: 63  YYSIPYCRPKKIVDSAENLGEVLRGDRIENSPY-FKMREPQMCNVICRLILDAKTAKAFK 121
           YYS+P+CRP+KI+DSAENLGEVLRGDRIENSPY FKMREPQMC ++ R+ LDAK AK FK
Sbjct: 62  YYSLPFCRPEKILDSAENLGEVLRGDRIENSPYVFKMREPQMCGIVGRIKLDAKDAKEFK 121

Query: 122 EKIDDEYRVNMILDNLPLVFPIRRLDQESPTVYQLGFHVGLKGQYTGTKDEKYFIHNHLA 181
           EKI+DEYRVNMILDNLPLVFPI+R DQESP VYQ+G+HVGLKGQYT +KDEKYFIHNHLA
Sbjct: 122 EKINDEYRVNMILDNLPLVFPIQRQDQESPVVYQMGYHVGLKGQYTASKDEKYFIHNHLA 181

Query: 182 FTVKYHRDIQTDYARIVGFEVKPFSVKHEYEGNWNEK-TRLTTCDPHSKHTVVNSNTPQE 240
           FTV+YH+D+QTD ARIVGFEVKPFSVKHEYEGNWN+K TRLTTCDPH+KHTVVNSN+PQE
Sbjct: 182 FTVRYHKDVQTDSARIVGFEVKPFSVKHEYEGNWNDKNTRLTTCDPHAKHTVVNSNSPQE 241

Query: 241 VAENKEIIFTYDVEFQESDVKWASRWDAYLLMSDDQIHWFSIVNSLMIVLFLSGMVAMIM 300
           V + +EI+FTYDVEFQES VKWASRWDAYLLMSDDQIHWFSIVNSLMIVLFLSGMVAMIM
Sbjct: 242 VDDGREIVFTYDVEFQESGVKWASRWDAYLLMSDDQIHWFSIVNSLMIVLFLSGMVAMIM 301

Query: 301 LRTLYRDISKYNELETQEEAQEETGWKLVHGDVFRPPTNSDLLCVYVGTGVQFFGMMLVT 360
           LRTLYRDISKYNELET EEAQEETGWKLVHGDVFR P NSDLLCVYVGTGVQF GM++VT
Sbjct: 302 LRTLYRDISKYNELETLEEAQEETGWKLVHGDVFRAPKNSDLLCVYVGTGVQFLGMVVVT 361

Query: 361 MIFALLGFLSPSNRGGLMTAMLLLWVFMGLFAGYASARLYKLFKGTEWKRIAFRTAITFP 420
           M+FA+LGFLSPSNRGGLMTAMLLLWVFMGLFAG+A+ARLYK+FKGTEWK++A +TA+ FP
Sbjct: 362 MMFAILGFLSPSNRGGLMTAMLLLWVFMGLFAGFAAARLYKMFKGTEWKKVALKTAVMFP 421

Query: 421 GIVSAIFFVLNALIWGQKSSGAVPFGTMFALIVLWFGISVPLVYVGSFVGFKKPAIEDPV 480
             + AIFFVLNALIWGQKSSGAVPFGTMFAL+ LWFGISVPLV+VGS+VGFKKPAIEDPV
Sbjct: 422 ATIFAIFFVLNALIWGQKSSGAVPFGTMFALVFLWFGISVPLVFVGSYVGFKKPAIEDPV 481

Query: 481 KTNKIPRQIPEQAWYMNPIFSILIGGILPFGAVFIELFFILTSIWLNQFYYIFGFLFLVF 540
           KTNKIPRQIPEQAWYM+P FS+LIGGILPFGAVFIELFFILTSIWLNQFYYIFGFLFLVF
Sbjct: 482 KTNKIPRQIPEQAWYMHPAFSVLIGGILPFGAVFIELFFILTSIWLNQFYYIFGFLFLVF 541

Query: 541 VILIVTCAEITIVLCYFQLCSEDYQWWWRSYLTSGSSALYLFLYATFYFFTKLEITKLVS 600
           +IL++TCAEITIVLCYFQLCSEDY WWWRSYLTSGSSALYLFLY+TFYFFTKLEITKLVS
Sbjct: 542 IILLITCAEITIVLCYFQLCSEDYLWWWRSYLTSGSSALYLFLYSTFYFFTKLEITKLVS 601

Query: 601 GILYFGYMLIASYAFFVLTGTIGFYACFWFTRLIYSSVKID 641
           G+LYFGYM I SYAFFVLTGTIGFYACFWFTRLIYSSVKID
Sbjct: 602 GVLYFGYMSIVSYAFFVLTGTIGFYACFWFTRLIYSSVKID 642

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255548734\|ref\|XP_002515423.1\| Endosomal P24A protein precursor, putative [Ricinus communis] gi\|223545367\|gb\|EEF46872.1\| Endosomal P24A protein precursor, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|224089368\|ref\|XP_002308707.1\| predicted protein [Populus trichocarpa] gi\|118485813\|gb\|ABK94754.1\| unknown [Populus trichocarpa] gi\|222854683\|gb\|EEE92230.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224141971\|ref\|XP_002324334.1\| predicted protein [Populus trichocarpa] gi\|222865768\|gb\|EEF02899.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|357437169\|ref\|XP_003588860.1\| Transmembrane 9 superfamily protein member [Medicago truncatula] gi\|355477908\|gb\|AES59111.1\| Transmembrane 9 superfamily protein member [Medicago truncatula]	Back alignment and taxonomy information

>gi\|356564007\|ref\|XP_003550248.1\| PREDICTED: transmembrane 9 superfamily member 4-like [Glycine max]	Back alignment and taxonomy information

>gi\|225430488\|ref\|XP_002285526.1\| PREDICTED: transmembrane 9 superfamily member 4 isoform 1 [Vitis vinifera] gi\|296082138\|emb\|CBI21143.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|30683350\|ref\|NP_196645.2\| endomembrane family protein 70 [Arabidopsis thaliana] gi\|332004219\|gb\|AED91602.1\| endomembrane family protein 70 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|356552408\|ref\|XP_003544560.1\| PREDICTED: transmembrane 9 superfamily member 4-like [Glycine max]	Back alignment and taxonomy information

>gi\|297811193\|ref\|XP_002873480.1\| hypothetical protein ARALYDRAFT_909044 [Arabidopsis lyrata subsp. lyrata] gi\|297319317\|gb\|EFH49739.1\| hypothetical protein ARALYDRAFT_909044 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		641
TAIR\|locus:2183710		648	EMP1 "endomembrane protein 1"	0.978	0.967	0.806	5.7e-281
TAIR\|locus:2047565		637	AT2G24170 [Arabidopsis thalian	0.978	0.984	0.770	2.1e-267
TAIR\|locus:2091561		641	TMN7 "transmembrane nine 7" [A	0.959	0.959	0.707	3e-243
TAIR\|locus:2205682		637	TMN6 "transmembrane nine 6" [A	0.957	0.963	0.690	5.6e-235
UNIPROTKB\|F1NVX7		642	TM9SF4 "Uncharacterized protei	0.956	0.954	0.475	9.9e-158
RGD\|1307768		643	Tm9sf4 "transmembrane 9 superf	0.957	0.954	0.470	8e-156
MGI\|MGI:2139220		643	Tm9sf4 "transmembrane 9 superf	0.957	0.954	0.468	1.7e-155
UNIPROTKB\|Q92544		642	TM9SF4 "Transmembrane 9 superf	0.954	0.953	0.465	5.6e-155
UNIPROTKB\|A5D7E2		642	TM9SF4 "Transmembrane 9 superf	0.960	0.959	0.467	7.2e-155
UNIPROTKB\|F1PWE3		642	TM9SF4 "Uncharacterized protei	0.945	0.943	0.471	7.2e-155

TAIR\|locus:2183710 EMP1 "endomembrane protein 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2700 (955.5 bits), Expect = 5.7e-281, P = 5.7e-281
 Identities = 507/629 (80%), Positives = 547/629 (86%)

Query:    15 VTFVVLLLIHGSHSFYLPGVAPQDFVKGDELYVKVNKLTSTKTQLPYSYYSIPYCRPKKI 74
             +  + LL IHG+HSFYLPGVAPQDF KGDEL VKVNKLTS KTQLPYSYYS+P+CRP KI
Sbjct:    20 IALIFLLFIHGAHSFYLPGVAPQDFEKGDELKVKVNKLTSIKTQLPYSYYSLPFCRPSKI 79

Query:    75 VDSAENLGEVLRGDRIENSPY-FKMREPQMCNVICRLILDAKTAKAFKEKIDDEYRVNMI 133
             VDS ENLGEVLRGDRIEN+PY FKMRE QMCN++ R+ LDAKTAKAFKEKIDDEYRVNMI
Sbjct:    80 VDSTENLGEVLRGDRIENAPYSFKMREAQMCNILGRVTLDAKTAKAFKEKIDDEYRVNMI 139

Query:   134 LDNLPLVFPIRRLDQESPTV-YQLGFHVGLKGQYTGTKDEKYFIHNHLAFTVKYHRDIQT 192
             LDNLPLV PI R+DQ SP+V YQLG+HVGLKGQY G+K++K+F+HNHLAFTV+YHRDIQT
Sbjct:   140 LDNLPLVVPIERVDQGSPSVVYQLGYHVGLKGQYEGSKEQKFFMHNHLAFTVRYHRDIQT 199

Query:   193 DYARIVGFEVKPFSVKHEYEGNWNEKTRLTTCDPHSKHTVVNSNTPQEVAENKEIIFTYD 252
             D ARIVGFEVKP+SVKHEYEG W+EKTRLTTCDPH+K  VV+S TPQEV + KEIIFTYD
Sbjct:   200 DAARIVGFEVKPYSVKHEYEGEWSEKTRLTTCDPHTKRLVVSSATPQEVEQKKEIIFTYD 259

Query:   253 VEFQESDVKWASRWDAYLLMSDDQIHWFSIVNSLMIVLFLSGMVAMIMLRTLYRDISKYN 312
             V+FQES+VKWASRWD YLLMSD+QIHWFSIVNSLMIVLFLSGMVAMIMLRTLYRDIS+YN
Sbjct:   260 VDFQESEVKWASRWDTYLLMSDNQIHWFSIVNSLMIVLFLSGMVAMIMLRTLYRDISRYN 319

Query:   313 XXXXXXXXXXXXGWKLVHGDVFRPPTNSDLLCVYVGTGVQFFGMMLVTMIFALLGFLSPS 372
                         GWKLVHGDVFR PTNSDLLCVYVGTGVQ  GM+ VTMIFA+LGFLSPS
Sbjct:   320 ELETQEEAQEETGWKLVHGDVFRLPTNSDLLCVYVGTGVQCLGMVFVTMIFAMLGFLSPS 379

Query:   373 NRGGLMTAMLLLWVFMGLFAGYASARLYKLFKGTEWKRIAFRTAITFPGIVSAIFFVLNA 432
             NRGGLMTAMLLLWVFMGLFAGYAS+RLYK+FKGTEWKRIAFRTA  FP +VSAIFFVLNA
Sbjct:   380 NRGGLMTAMLLLWVFMGLFAGYASSRLYKMFKGTEWKRIAFRTAFLFPAVVSAIFFVLNA 439

Query:   433 LIWGQKSSGAVPFGTMFALIVLWFGISVPLVYVGSFVGFKKPAIEDPVKTNKIPRQIPEQ 492
             LIWGQKSSGAVPFGTMFALI LWFGISVPLV+VG ++GFKKPA +DPVKTNKIPRQIPEQ
Sbjct:   440 LIWGQKSSGAVPFGTMFALIFLWFGISVPLVFVGGYIGFKKPAADDPVKTNKIPRQIPEQ 499

Query:   493 AWYMNPIFSILIGGILPFGAVFIELFFILTSIWLNQXXXXXXXXXXXXXXXXXTCAEITI 552
             AWYMNP+FSILIGGILPFGAVFIELFFILTSIWLNQ                 TCAEIT+
Sbjct:   500 AWYMNPVFSILIGGILPFGAVFIELFFILTSIWLNQFYYIFGFLFLVFVILIVTCAEITV 559

Query:   553 VLCYFQLCSEDYQWWWRSYLTSGSSXXXXXXXXXXXXXXKLEITKLVSGILYFGYMLIAS 612
             VLCYFQLCSEDY WWWRSYLTSGSS              KL+ITKLVS +LYFGYMLIAS
Sbjct:   560 VLCYFQLCSEDYLWWWRSYLTSGSSALYLFLYATFYFFTKLQITKLVSAMLYFGYMLIAS 619

Query:   613 YAFFVLTGTIGFYACFWFTRLIYSSVKID 641
             YAFFVLTGTIGFYAC WFTRLIYSSVKID
Sbjct:   620 YAFFVLTGTIGFYACLWFTRLIYSSVKID 648

GO:0005739 "mitochondrion" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA;ISS

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR\|locus:2047565 AT2G24170 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2091561 TMN7 "transmembrane nine 7" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2205682 TMN6 "transmembrane nine 6" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NVX7 TM9SF4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

RGD\|1307768 Tm9sf4 "transmembrane 9 superfamily protein member 4" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

MGI\|MGI:2139220 Tm9sf4 "transmembrane 9 superfamily protein member 4" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|Q92544 TM9SF4 "Transmembrane 9 superfamily member 4" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|A5D7E2 TM9SF4 "Transmembrane 9 superfamily member 4" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F1PWE3 TM9SF4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8BH24	TM9S4_MOUSE	No assigned EC number	0.5039	0.9578	0.9548	yes	no
Q5RDY2	TM9S4_PONAB	No assigned EC number	0.5047	0.9516	0.9501	yes	no
Q4KLL4	TM9S4_RAT	No assigned EC number	0.5054	0.9578	0.9548	yes	no
A5D7E2	TM9S4_BOVIN	No assigned EC number	0.5	0.9609	0.9595	yes	no
Q55FP0	PHG1A_DICDI	No assigned EC number	0.5163	0.9656	0.9656	yes	no
Q92544	TM9S4_HUMAN	No assigned EC number	0.5031	0.9516	0.9501	yes	no
Q9Y819	YON8_SCHPO	No assigned EC number	0.3753	0.9297	0.9475	yes	no
P32802	TMN1_YEAST	No assigned EC number	0.3593	0.9282	0.8920	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		641
pfam02990		518	pfam02990, EMP70, Endomembrane protein 70	0.0

>gnl\|CDD\|217309 pfam02990, EMP70, Endomembrane protein 70	Back alignment and domain information

 Score =  737 bits (1904), Expect = 0.0
 Identities = 304/546 (55%), Positives = 396/546 (72%), Gaps = 33/546 (6%)

Query: 59  LPYSYYSIPYCRPKKIVDSAENLGEVLRGDRIENSPY-FKMREPQMCNVICRLILDAKTA 117
            PY YYS+P+CRP+KI   +E+LGEVL GDRI NSPY  K  E + C V+C + L ++  
Sbjct: 1   EPYEYYSLPFCRPEKIKHKSESLGEVLFGDRIYNSPYKLKFLEEKECEVLCAVKLTSEDV 60

Query: 118 KAFKEKIDDEYRVNMILDNLPLVFPIRRLDQESPTVYQLGFHVGLKGQYTGTKDEKYFIH 177
           K F++ I++ Y V  ++DNLP+   + ++D      ++ GF +G +       +EKY++ 
Sbjct: 61  KFFRKAIEEGYYVQWLIDNLPVAGFVGKVD-NKGVGFESGFPLGFQ------TEEKYYLF 113

Query: 178 NHLAFTVKYHRDIQTDYARIVGFEVKPFSVKHEYEGNWNEKTRLTTCDPHSKHTVVNSNT 237
           NHL F ++YH     DY RIVG EV P SVK             + C   S         
Sbjct: 114 NHLDFVIEYHDRDNDDY-RIVGIEVTPRSVKP------------SGCSTTSS-------- 152

Query: 238 PQEVAENKE--IIFTYDVEFQESDVKWASRWDAYLL-MSDDQIHWFSIVNSLMIVLFLSG 294
           PQE+ E KE  + FTY V+++ESDVKWASRWD YL  M D QIHWFSI+NSL+IVLFLSG
Sbjct: 153 PQELDEGKENELTFTYSVKWKESDVKWASRWDKYLDAMHDLQIHWFSIINSLVIVLFLSG 212

Query: 295 MVAMIMLRTLYRDISKYNELETQEEAQEETGWKLVHGDVFRPPTNSDLLCVYVGTGVQFF 354
           +V+MI++RTL RDI++YNEL+  E+AQEE+GWKLVHGDVFRPP N  LL   VG+GVQ  
Sbjct: 213 IVSMILMRTLRRDIARYNELDEDEDAQEESGWKLVHGDVFRPPRNPMLLSALVGSGVQLL 272

Query: 355 GMMLVTMIFALLGFLSPSNRGGLMTAMLLLWVFMGLFAGYASARLYKLFKGTEWKRIAFR 414
            M++ T++FA LGFLSPSNRG L+TA ++L+   G  AGY SARLYK FKG +WKR    
Sbjct: 273 LMVIGTIVFACLGFLSPSNRGSLLTAAIVLYALTGFVAGYVSARLYKTFKGKKWKRNLIL 332

Query: 415 TAITFPGIVSAIFFVLNALIWGQKSSGAVPFGTMFALIVLWFGISVPLVYVGSFVGFKKP 474
           TA  FPGIV  IFFVLN ++W   SSGA+PFGT+ AL++LWF +SVPL ++G  VGF+  
Sbjct: 333 TAFLFPGIVFVIFFVLNFVLWAYGSSGAIPFGTIVALLLLWFLVSVPLTFLGGIVGFRNR 392

Query: 475 AI-EDPVKTNKIPRQIPEQAWYMNPIFSILIGGILPFGAVFIELFFILTSIWLNQFYYIF 533
           A  + PV+TN+IPRQIPEQ WY++P+  IL+GGILPFGA+FIELFFI TS+WL++ YY+F
Sbjct: 393 AGEQHPVRTNQIPRQIPEQPWYLSPLPGILMGGILPFGAIFIELFFIFTSLWLHKIYYMF 452

Query: 534 GFLFLVFVILIVTCAEITIVLCYFQLCSEDYQWWWRSYLTSGSSALYLFLYATFYFFTKL 593
           GFLFLVF+IL+V C+E+TIVL YFQLC+EDY+WWWRS+LTSGS+A+Y+FLY+ +YFFTKL
Sbjct: 453 GFLFLVFIILVVVCSEVTIVLTYFQLCAEDYRWWWRSFLTSGSTAVYVFLYSIYYFFTKL 512

Query: 594 EITKLV 599
           +I+  V
Sbjct: 513 KISGFV 518

Length = 518

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		641
KOG1278		628	consensus Endosomal membrane proteins, EMP70 [Intr	100.0
KOG1277		593	consensus Endosomal membrane proteins, EMP70 [Intr	100.0
PF02990		521	EMP70: Endomembrane protein 70; InterPro: IPR00424	100.0
PF11368		248	DUF3169: Protein of unknown function (DUF3169); In	84.68

>KOG1278 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

Probab=100.00  E-value=2.5e-208  Score=1646.67  Aligned_cols=626  Identities=66%  Similarity=1.165  Sum_probs=587.4

Q ss_pred             CCccccchHHHHHHHHHHHHHhhccceeecCCCCCCCCCCCCeEEEEEecccCCCCCcccccccCCCcCCCCcccccccc
Q 006529            2 KSRTRSTSATTAIVTFVVLLLIHGSHSFYLPGVAPQDFVKGDELYVKVNKLTSTKTQLPYSYYSIPYCRPKKIVDSAENL   81 (641)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~pg~~p~~Y~~gd~V~l~vNkl~s~~t~~~y~Yy~lpfC~p~~~~~~~~sl   81 (641)
                      ..+.|+..+.. .+ +++.++.+.+++||+||++|.+|++||+|+++|||++|.++|+|||||++|||+|+++++++|||
T Consensus         2 ~~~~~~~~~~~-~~-ll~~~~~~~~~~FylpG~aPv~f~~gd~i~l~vnklts~~t~lpY~YY~~~Fc~p~~i~~~~EnL   79 (628)
T KOG1278|consen    2 LRPKRSSRTLL-AL-LLVSLLLSTSSAFYLPGVAPVNFCSGDPIELKVNKLTSSRTQLPYEYYSLPFCRPEKIKKQSENL   79 (628)
T ss_pred             CcccchhhHHH-HH-HHHHHHHhcccceecCCcCCccCCCCCceEEEEEEeeccccccCcccccccccCccccCCcccch
Confidence            34445444333 22 22333334488999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccCceeecCe-eEeccccccccceeeecCHHHHHHHHHHHHhcceEEEEEeceeeeeecccccCCCCeeeecCccc
Q 006529           82 GEVLRGDRIENSPY-FKMREPQMCNVICRLILDAKTAKAFKEKIDDEYRVNMILDNLPLVFPIRRLDQESPTVYQLGFHV  160 (641)
Q Consensus        82 GevL~Gdr~~~S~y-i~f~~~~~c~~lC~~~~t~~~~~~l~~~I~~~Y~~~~~iDnLPv~~~~~~~~~~~~~~y~~Gfpl  160 (641)
                      ||+|+|||++|||| ++|++|++|+.+|+.++++++.+.++|+|+++|++||++||||++.+.... ++++++|++|||+
T Consensus        80 GeVl~GDRi~nSPy~~~m~e~~~C~~lC~~k~~~~~~~~l~~~I~~~Y~v~wivDnlPva~~~~~~-~~~~~~y~~Gfpl  158 (628)
T KOG1278|consen   80 GEVLRGDRIENSPYKFKMLENQPCETLCATKLDKEDAKLLKKLIREGYVVNWIVDNLPVATRYERS-DDGKVYYGTGFPL  158 (628)
T ss_pred             hceeccCcccCCCceEecccCCcchhhhcccCCHHHHHHHHHHHhhccEeeeeecCCceeEEEeec-CCCceEeccCccc
Confidence            99999999999999 999999999999999999999999999999999999999999999876552 3478999999999


Q ss_pred             cccccccCCCCCcEEEeeeEEEEEEEecCCCCCceEEEEEEEEeeeeeccccCCcccccccccCCCCCCccccCCCCccc
Q 006529          161 GLKGQYTGTKDEKYFIHNHLAFTVKYHRDIQTDYARIVGFEVKPFSVKHEYEGNWNEKTRLTTCDPHSKHTVVNSNTPQE  240 (641)
Q Consensus       161 G~~~~~~~~~~~~~yL~NH~~f~I~Y~~~~~~~~~rIVgf~v~P~Si~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~  240 (641)
                      |+.+.   ++.+++|++||++|+|+||+.+ .++||||||||+|+|++|++.+.+++. ...+|+.+.++..+++     
T Consensus       159 G~~~~---~~~~~~y~~NHl~~~i~yH~~~-~~~~riVgfeV~P~Si~~~~~~~~~~~-~~~~c~~~~~~~~~~e-----  228 (628)
T KOG1278|consen  159 GFKGP---KDEDKYYLHNHLDFVIRYHRDD-NDKYRIVGFEVKPVSIKHEHEKGDSKN-SLPTCSIPEKPLELDE-----  228 (628)
T ss_pred             eeccC---CCccceeEeeeEEEEEEEEecC-CCceEEEEEEEEeeeeecccCCCcccc-cCCcccCCCCccccCC-----
Confidence            99842   2556789999999999999987 566999999999999999876544333 5667877665544443     


Q ss_pred             cCCCcEEEEEEEEEEeecccccchhhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhhhhhh
Q 006529          241 VAENKEIIFTYDVEFQESDVKWASRWDAYLLMSDDQIHWFSIVNSLMIVLFLSGMVAMIMLRTLYRDISKYNELETQEEA  320 (641)
Q Consensus       241 ~~~~~~i~fTYSV~w~~s~~~w~~Rwd~yl~~~~~~ihw~sIiNS~~ivl~L~~~v~~Il~r~l~~D~~~yn~~~~~~~~  320 (641)
                       .+++++.|||||+|+|||++|++|||.||++++.|||||||+||++||+||+++|++|++||||||++|||++|.|||+
T Consensus       229 -~~~~~i~fTYsV~f~esdi~WasRWD~yL~m~~~qIhWfSIiNSlvIVlfLSgiv~mI~lRtl~rDiarYne~d~~~d~  307 (628)
T KOG1278|consen  229 -GEETEIVFTYSVKFEESDIKWASRWDYYLHMEDVQIHWFSIINSLVIVLFLSGIVAMIMLRTLYRDIARYNELDLDDDA  307 (628)
T ss_pred             -CCceEEEEEEEEEEEeccCcchhhHHHHhcCCCCceEEEehhhhHHHHHHHHHHHHHHHHHHHHHhHhhhccccchhhh
Confidence             2356799999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCceEEeccccCCCCCccceeeeecchhHHHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHhhhhHHHHHHHH
Q 006529          321 QEETGWKLVHGDVFRPPTNSDLLCVYVGTGVQFFGMMLVTMIFALLGFLSPSNRGGLMTAMLLLWVFMGLFAGYASARLY  400 (641)
Q Consensus       321 ~ee~GWKlvhgDVFR~P~~~~lls~lvG~G~Qll~~~~~~l~~a~~g~lsp~~rg~l~t~~i~ly~~~g~~~Gy~S~r~y  400 (641)
                      |||+|||||||||||||+++|+||++||+|+|+++|+++++++|++|++||++||+++|+++++|+++|++|||+|+|+|
T Consensus       308 ~Ee~GWKLVhGDVFR~P~~~~lLsv~vGsGvQ~l~M~~vti~fA~lGflSPs~RGsLmT~~~~l~v~~G~~agY~s~rly  387 (628)
T KOG1278|consen  308 QEESGWKLVHGDVFRPPRNSMLLSVLVGSGVQLLGMILVTIFFACLGFLSPSSRGSLMTAMVLLFVFMGFVAGYVSARLY  387 (628)
T ss_pred             hhhcceEEeecccccCCCCCeEEEEEeccChhhhHHHHHHHHHHHhccCCccccccHHHHHHHHHHHHHHhhhhhhhhhH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcCccchhhhhhhccchhhHHHHHHHHHHHHHhhccCCCccChhHHHHHHHHHHHhhccchhhhhhhcccCCCCCCCc
Q 006529          401 KLFKGTEWKRIAFRTAITFPGIVSAIFFVLNALIWGQKSSGAVPFGTMFALIVLWFGISVPLVYVGSFVGFKKPAIEDPV  480 (641)
Q Consensus       401 k~~~g~~W~~~~~lt~~l~P~~~~~i~~~lN~~~~~~~Ss~aipf~ti~~l~~lw~~vs~PL~~lG~~~g~k~~~~~~P~  480 (641)
                      |+++|+.||+++++|++++||+++++++++|+++|+++||+|+||+|++++++||++||+||+++|+++|+|++++|+|+
T Consensus       388 k~~~g~~wk~~~~lta~l~PGivf~~~f~lN~~lW~~~SSgAvPF~T~~~ll~LwF~isVPLsf~G~y~g~kk~~~e~Pv  467 (628)
T KOG1278|consen  388 KTFKGREWKRNAILTAFLFPGIVFAIFFVLNFFLWGKHSSGAVPFSTMVALLFLWFGISVPLSFVGGYFGFKKPAIEHPV  467 (628)
T ss_pred             hhhcCCcchhhHHhhhhhcchHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHhhhhHHHhhHHhhccCCCCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCCCCCcccccchhhhcccccccchhhHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhHHhhhhhcccc
Q 006529          481 KTNKIPRQIPEQAWYMNPIFSILIGGILPFGAVFIELFFILTSIWLNQFYYIFGFLFLVFVILIVTCAEITIVLCYFQLC  560 (641)
Q Consensus       481 r~n~ipR~IP~q~~y~~~~~~~l~~G~lPF~~i~iEl~fi~~S~W~~~~yy~fgfL~~~~iilii~~a~vsI~~tY~~L~  560 (641)
                      ||||||||||+||||+++++++++||++|||+|||||+||++|+|.||+||+|||||++++||+++|||+||++||+|||
T Consensus       468 rTNqIpRqIP~q~~y~~~~~~ili~GilPFg~ifIELfFI~~SiW~~qfYY~FGFLFlvfiiLvvtcaeisIvl~Yf~LC  547 (628)
T KOG1278|consen  468 RTNQIPRQIPEQPWYLNPIPSILIAGILPFGAIFIELFFILSSIWLNQFYYMFGFLFLVFIILVVTCAEISIVLTYFQLC  547 (628)
T ss_pred             ccCCCcccCCCCccccchhhHHHhhcccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCceeeeeecccCchhHHHHHHHHhhheeeeeeccceeehhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcccC
Q 006529          561 SEDYQWWWRSYLTSGSSALYLFLYATFYFFTKLEITKLVSGILYFGYMLIASYAFFVLTGTIGFYACFWFTRLIYSSVKI  640 (641)
Q Consensus       561 ~Edy~WwWrSF~~~gs~~~y~flYsi~y~~~~~~~~g~~~~~~yf~ys~l~s~~~~l~~GtiGflas~~Fv~~IY~~iK~  640 (641)
                      +||||||||||++||++|+|+|+||++|+++|++++|++++++|||||++++++++++||||||+||+|||||||+++|+
T Consensus       548 ~Edy~WwWRsF~~sG~~avY~fiYsi~Y~~~kL~i~g~~s~~LYfgYsli~~~~~~l~tGtIGF~a~~~Fv~kIYssvKi  627 (628)
T KOG1278|consen  548 AEDYNWWWRSFLTSGSSAVYVFIYSIFYFFTKLEISGFVSAVLYFGYSLIISLLFFLLTGTIGFLAAFWFVRKIYSSVKI  627 (628)
T ss_pred             hcccceeeeeeeccCcchhhHHHHHHhhhheeeeecccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhheec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             C
Q 006529          641 D  641 (641)
Q Consensus       641 D  641 (641)
                      |
T Consensus       628 D  628 (628)
T KOG1278|consen  628 D  628 (628)
T ss_pred             C
Confidence            8

>KOG1277 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter	Back alignment and domain information

>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		641
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 45.6 bits (107), Expect = 5e-05
 Identities = 53/351 (15%), Positives = 94/351 (26%), Gaps = 85/351 (24%)

Query: 96  FKMREPQMCNVICRLILDAKTAKAFKEKIDDEYRVNMILDNLPLVFPIRRLD---QESPT 152
           F+  E Q      + IL       F++   D +    + D    +     +D        
Sbjct: 9   FETGEHQYQ---YKDIL-----SVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDA 60

Query: 153 VYQLGFHVGLKGQYTGTKDEKYFIHNHLAFTVKYHRDIQTDY----ARIVGFEVKPFSVK 208
           V                +  + F+   L          + +Y    + I   + +P  + 
Sbjct: 61  VSGTLRLFWTLLSK-QEEMVQKFVEEVL----------RINYKFLMSPIKTEQRQPSMMT 109

Query: 209 HEYEGNWNEKTRL-TTCDPHSKHTVVNSNTPQEVAENKEIIFTYDVEFQ-ESDV------ 260
             Y     ++ RL       +K+ V   +  Q   + ++ +     E +   +V      
Sbjct: 110 RMYI---EQRDRLYNDNQVFAKYNV---SRLQPYLKLRQALL----ELRPAKNVLIDGVL 159

Query: 261 ---KW-----ASRWDAYLLMSDDQIHWFSIVNSLMIVLFLSGMVAMIMLRTLYRDISK-- 310
              K                 D +I W ++ N        S    + ML+ L   I    
Sbjct: 160 GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNC------NSPETVLEMLQKLLYQIDPNW 213

Query: 311 -------YNELETQEEAQEETGWKLVHGDVFRPPTNSDLLC---VYVGTGVQFFGM---M 357
                   N        Q E    L      +P  N  LL    V        F +   +
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKS----KPYENC-LLVLLNVQNAKAWNAFNLSCKI 268

Query: 358 LVTMIFA-LLGFLSPSNRGGLMTAMLLLWVF-----MGLFAGYASARLYKL 402
           L+T  F  +  FLS +    + +               L   Y   R   L
Sbjct: 269 LLTTRFKQVTDFLSAATTTHI-SLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318

PyMOL of 1vt4

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00