Citrus Sinensis ID: 006541

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-
MTLHSIIIQKLLSTNAHLGRRVAAHHFKQYTYGFRNAMAIIDSDKTLICLRNACHFISLLARQRAAFMFVNTNPLFDEIVLQMTQKIGCYNPNMNALWRMGGFLTNSSSPKKFRSRNKKIRFGPTKLPDCVVVLDTERKSSVIMEAAKLQVPIVALVDSSMPLDVYSKITYPVPGNDSVQFVYLLCNMITKTFLVEQKKLGLLKDDEDQRERIDSKKGNGEKVGLIETKREIDSKDEILVVPYESLASISEDIAETKMLLDKLVVVKFNGALGTNMGFSGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLEKYSNSKVDIHSLSLSQQPHEKSFEGHSRKDKLYPSSDHSVVFLSLMKSGTLDLLLVQGKEYALVVDSDNVAAVADPKIFNHLIQNQIEYCMEVAPVPSIDLRNSLINLRPGKFQLVDITQNPTKQSGGKFKFINTRSMWVNLRAIKRLIDTDELKVENFSSSKEVNDDQIISRGTAADSAIQFFDHTIGINVAQSRYLPVNSTSDLLLLQSDLYTADEGILVQNPARDNPANPSIELGPEFEKVNNFQSRFKSIPSIINLDSLKVEGDVWFGAGITLKGKVSIVAKRGMKLEIPDGIVLENKEIKDVADI
cccccccHHHHHHcccccccccccccccccEEcccccEEEEEcHHHHHHHHHHHHHHHHHHHccccEEEEEccHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHccccccccEEEEEcccccccHHHHHHHccccEEEEEcccccccccccccEEccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcccccccccccccHHHcccccccccccccccccccccccHHHHHHHHcccEEEEEccccccccccccccccEEEcccccHHHHHHHHHHHHHHHccccccEEEcccccccHHHHHHHHHccccccEEEEccccccccccccccccccccccccccccHHHHHHHHHcHHHHHHHcccEEEEEEccccccccccHHHHHHHHHccccEEEEEcccccccccccEEEEEcccEEEEEEccccccccccccccccccccEEEHHHHHHHHHcccccccccccccccccccEEEEcccccHHHHcccccEEEEEcccccccccccccHHHHHcccEEEcccEEEEccccccccccEEEcccccccHHHHHHHcccccccccccEEEEEEEEEEccccEEEEEEEEEEccccEEEcccccEEccEEEcccccc
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEcccHHHHHHHHHHHHHHHHHHHcccEEEEcccHHHHHHHHHHHHHccccccccccEEccccccccccccccccccccEEEEcccccccEEEEEEcccccHHHHHHHHccccEEEEEccccccHHHHHEEccccccHHHHHHHHHHHHHHHHcccHHHHHcccHHHHHHHHHHHHHHHHHcccccccHHHcccccccccEEEccccccccccHHHHHHHHHHEEEEEEccccccccccccccEEEEEcccccHHHHHHHHHHHHHHHccccccEEEEccccccHHHHHHHHHHccccEEEEEEccccccccccccccccccccccccccccHHHHHHHccHHHHHHHcccEEEEEEccccccccccHHHHHHHHHccccEEEEEcccccccccccEEEEEcccEEEEEEccccccccccEEEEEccccEEEcHHHHHHHHHccccccEEEEcccccccccEEEHHHHHHHHHHHccccEEEEEcccccccccccccEEEEEcccEEEcccEEEEccccccccccEEEccccHHHHHHHHHHccccccHHEHccEEEEEEEEEcccEEEEEEEEEEEccccEEEcccccEEEcEEEcccccc
MTLHSIIIQKLLSTNAHLGRRVAAHHFKQYTYGFRNAMAIIDSDKTLICLRNACHFISLLARQRAAFMFVNTNPLFDEIVLQMTQkigcynpnmNALWRmggfltnssspkkfrsrnkkirfgptklpdcvvVLDTERKSSVIMEAAKLQVPIVALvdssmpldvyskitypvpgndsVQFVYLLCNMITKTFLVEQKklgllkddedqreridskkgngekvglietkreidskdeilvVPYESLASISEDIAETKMLLDKLVVVKFNgalgtnmgfsgpksaievknnltplDLMVDQVESlnskygcnvplllMNTAETHDRVQKVLEKYsnskvdihslslsqqpheksfeghsrkdklypssdhSVVFLSLMKSGTLDLLLVQGKEYAlvvdsdnvaavadpkIFNHLIQNQIEYCmevapvpsidlrnslinlrpgkfqlvditqnptkqsggkfkfiNTRSMWVNLRAIKRLidtdelkvenfssskevnddqiisrgtaadsaiQFFDhtiginvaqsrylpvnstsdLLLLqsdlytadegilvqnpardnpanpsielgpefekvnnfqsrfksipsiinldslkvegdvwfgagitLKGKVSIVAKRgmkleipdgivlenkeikdvadi
MTLHSIIIQKLLSTNAHLGRRVAAHHFKQYTYGFRNAMAIIDSDKTLICLRNACHFISLLARQRAAFMFVNTNPLFDEIVLQMTQKIGCYNPNMNALWRMGGFLtnssspkkfrsrnkkirfgptklpdcvvVLDTERKSSVIMEAAKLQVPIVALVDSSMPLDVYSKITYPVPGNDSVQFVYLLCNMITKTFLVEQKklgllkddedqreridskkgngekvglietkreidskdeiLVVPYESLASISEDIAETKMLLDKLVVVKFNGALGtnmgfsgpkSAIEVKNNLTPLDLMVDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLEKYSNSKVDIHSLSLSQQPHEKSFEGHSRKDKLYPSSDHSVVFLSLMKSGTLDLLLVQGKEYALVVDSDNVAAVADPKIFNHLIQNQIEYCMEVAPVPSIDLRNSLINLRPGKFqlvditqnptkqsggkfkfintrsMWVNLRAIKRlidtdelkvenfssskevnddqiISRGTAADSAIQFFDHTIGINVAQSRYLPVNSTSDLLLLQSDLYTADEGILVQNPARDNPANPSIELGPEFEKVNNFQSRFKSIPSIINLDSLKVEGDVWFGAGITLKGKVSIVAKrgmkleipdgivlenkeikdvadi
MTLHSIIIQKLLSTNAHLGRRVAAHHFKQYTYGFRNAMAIIDSDKTLICLRNACHFISLLARQRAAFMFVNTNPLFDEIVLQMTQKIGCYNPNMNALWRMGGFLTNSSSPKKFRSRNKKIRFGPTKLPDCVVVLDTERKSSVIMEAAKLQVPIVALVDSSMPLDVYSKITYPVPGNDSVQFVYLLCNMITKTFLVEQKKLGLLKDDEDQRERIDSKKGNGEKVGLIETKREIDSKDEILVVPYESLASISEDIAETKMLLDKLVVVKFNGALGTNMGFSGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLEKYSNSKVDIHSLSLSQQPHEKSFEGHSRKDKLYPSSDHSVVFLSLMKSGTLDLLLVQGKEYalvvdsdnvaavadPKIFNHLIQNQIEYCMEVAPVPSIDLRNSLINLRPGKFQLVDITQNPTKQSGGKFKFINTRSMWVNLRAIKRLIDTDELKVENFSSSKEVNDDQIISRGTAADSAIQFFDHTIGINVAQSRYLPVNSTsdllllqsdlYTADEGILVQNPARDNPANPSIELGPEFEKVNNFQSRFKSIPSIINLDSLKVEGDVWFGAGITLKGKVSIVAKRGMKLEIPDGIVLENKEIKDVADI
***HSIIIQKLLSTNAHLGRRVAAHHFKQYTYGFRNAMAIIDSDKTLICLRNACHFISLLARQRAAFMFVNTNPLFDEIVLQMTQKIGCYNPNMNALWRMGGFLT**************IRFGPTKLPDCVVVLDTERKSSVIMEAAKLQVPIVALVDSSMPLDVYSKITYPVPGNDSVQFVYLLCNMITKTFLVEQKKLGLL*******************************KDEILVVPYESLASISEDIAETKMLLDKLVVVKFNGALGTNMGFSGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCNVPLLLMNTAETHDRVQKVL***************************************SVVFLSLMKSGTLDLLLVQGKEYALVVDSDNVAAVADPKIFNHLIQNQIEYCMEVAPVPSIDLRNSLINLRPGKFQLVDITQNPTKQSGGKFKFINTRSMWVNLRAIKRLIDTDELKVEN**********QIISRGTAADSAIQFFDHTIGINVAQSRYLPVNSTSDLLLLQSDLYTADEGILVQ********************VNNFQSRFKSIPSIINLDSLKVEGDVWFGAGITLKGKVSIVAKRGMKLEIPDGIVLE**********
***HSIIIQKLLSTNAHLGRRVAAHHFKQYTYGFRNAMAIIDSDKTLICLRNACHFISLLARQRAAFMFVNTNPLFDEIVLQMTQKIGCYNPNMNALWRMGGFLTNSSSPKKFRSRNKKIRFGPTKLPDCVVVLDTERKSSVIMEAAKLQVPIVALVDSSMPLDVYSKITYPVPGNDSVQFVYLLCNMITKTFLVEQKKLGLLKDDEDQRERIDSKKGNGEKVGLIETKREIDSKDEILVV***************KMLLDKLVVVKFNGALGTNMGFSGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLEKYSNSKVDIHSLSLSQ**************KLYPSSDHSVVFLSLMKSGTLDLLLVQGKEYALVVDSDNVAAVADPKIFNHLIQNQIEYCMEVAPVPSIDLRNSLINLRPGKFQLVDITQNPTKQSGGKFKFINTRSMWVNLRAIKRLIDTDELKVENFSSSKEVNDDQIISRGTAADSAIQFFDHTIGINVAQSRYLPVNSTSDLLLLQSDLYTADEGILVQNPARDNPANPSIELGPEFEKVNNFQSRFKSIPSIINLDSLKVEGDVWFGAGITLKGKVSIVAKRGMKLEIPDGIVLENKEIK*****
MTLHSIIIQKLLSTNAHLGRRVAAHHFKQYTYGFRNAMAIIDSDKTLICLRNACHFISLLARQRAAFMFVNTNPLFDEIVLQMTQKIGCYNPNMNALWRMGGFLTNSSSPKKFRSRNKKIRFGPTKLPDCVVVLDTERKSSVIMEAAKLQVPIVALVDSSMPLDVYSKITYPVPGNDSVQFVYLLCNMITKTFLVEQKKLGLLKDDEDQRERIDSKKGNGEKVGLIETKREIDSKDEILVVPYESLASISEDIAETKMLLDKLVVVKFNGALGTNMGFSGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLEKYSNSKVDIHSLSL**************KDKLYPSSDHSVVFLSLMKSGTLDLLLVQGKEYALVVDSDNVAAVADPKIFNHLIQNQIEYCMEVAPVPSIDLRNSLINLRPGKFQLVDITQNPTKQSGGKFKFINTRSMWVNLRAIKRLIDTDELKVENFSSSKEVNDDQIISRGTAADSAIQFFDHTIGINVAQSRYLPVNSTSDLLLLQSDLYTADEGILVQNPARDNPANPSIELGPEFEKVNNFQSRFKSIPSIINLDSLKVEGDVWFGAGITLKGKVSIVAKRGMKLEIPDGIVLENKEIKDVADI
*TLHSIIIQKLLSTNAHLGRRVAAHHFKQYTYGFRNAMAIIDSDKTLICLRNACHFISLLARQRAAFMFVNTNPLFDEIVLQMTQKIGCYNPNMNALWRMGGFLTNSSSPKKFRSRNKKIRFGPTKLPDCVVVLDTERKSSVIMEAAKLQVPIVALVDSSMPLDVYSKITYPVPGNDSVQFVYLLCNMITKTFLVEQKKLGLLKDDEDQRERIDSKKGNGEKVGLIETKREIDSKDEILVVPYESLASISEDIAETKMLLDKLVVVKFNGALGTNMGFSGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLEKYSNSKVDIHSLSLSQQPHEKSFEGHSRKDKLYPSSDHSVVFLSLMKSGTLDLLLVQGKEYALVVDSDNVAAVADPKIFNHLIQNQIEYCMEVAPVPSIDLRNSLINLRPGKFQLVDITQNPTKQSGGKFKFINTRSMWVNLRAIKRLIDTDELKVENFSSSKEVNDDQIISRGTAADSAIQFFDHTIGINVAQSRYLPVNSTSDLLLLQSDLYTADEGILVQNPARDNPANPSIELGPEFEKVNNFQSRFKSIPSIINLDSLKVEGDVWFGAGITLKGKVSIVAKRGMKLEIPDGIVLENKEIKD****
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MTLHSIIIQKLLSTNAHLGRRVAAHHFKQYTYGFRNAMAIIDSDKTLICLRNACHFISLLARQRAAFMFVNTNPLFDEIVLQMTQKIGCYNPNMNALWRMGGFLTNSSSPKKFRSRNKKIRFGPTKLPDCVVVLDTERKSSVIMEAAKLQVPIVALVDSSMPLDVYSKITYPVPGNDSVQFVYLLCNMITKTFLVEQKKLGLLKDDEDQRERIDSKKGNGEKVGLIETKREIDSKDEILVVPYESLASISEDIAETKMLLDKLVVVKFNGALGTNMGFSGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLEKYSNSKVDIHSLSLSQQPHEKSFEGHSRKDKLYPSSDHSVVFLSLMKSGTLDLLLVQGKEYALVVDSDNVAAVADPKIFNHLIQNQIEYCMEVAPVPSIDLRNSLINLRPGKFQLVDITQNPTKQSGGKFKFINTRSMWVNLRAIKRLIDTDELKVENFSSSKEVNDDQIISRGTAADSAIQFFDHTIGINVAQSRYLPVNSTSDLLLLQSDLYTADEGILVQNPARDNPANPSIELGPEFEKVNNFQSRFKSIPSIINLDSLKVEGDVWFGAGITLKGKVSIVAKRGMKLEIPDGIVLENKEIKDVADI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query641 2.2.26 [Sep-21-2011]
Q9SDX3467 UTP--glucose-1-phosphate N/A no 0.645 0.886 0.560 1e-128
P19595477 UTP--glucose-1-phosphate N/A no 0.639 0.859 0.568 1e-123
Q43772473 UTP--glucose-1-phosphate N/A no 0.630 0.854 0.562 1e-119
P57751470 UTP--glucose-1-phosphate yes no 0.630 0.859 0.547 1e-118
Q9M9P3469 Probable UTP--glucose-1-p no no 0.630 0.861 0.545 1e-117
Q9LKG7471 UTP--glucose-1-phosphate N/A no 0.630 0.857 0.545 1e-116
O64459471 UTP--glucose-1-phosphate N/A no 0.663 0.902 0.535 1e-116
Q9GCB9219 Ribosomal protein S2, mit no no 0.313 0.917 0.665 1e-77
Q54YZ0502 UTP--glucose-1-phosphate yes no 0.613 0.782 0.405 1e-76
Q16851508 UTP--glucose-1-phosphate yes no 0.606 0.765 0.388 1e-74
>sp|Q9SDX3|UGPA_MUSAC UTP--glucose-1-phosphate uridylyltransferase OS=Musa acuminata GN=UGPA PE=2 SV=1 Back     alignment and function desciption
 Score =  457 bits (1177), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 240/428 (56%), Positives = 299/428 (69%), Gaps = 14/428 (3%)

Query: 226 IETKREIDSKDEILVVPYESLASISEDIAETKMLLDKLVVVKFNGALGTNMGFSGPKSAI 285
           IE  +     DE+ VVPY++L+   ED+  TK LLDKL V+K NG LGT MG +GPKS I
Sbjct: 42  IEWSKIQTPTDEV-VVPYDTLSPPPEDLEATKKLLDKLAVLKLNGGLGTTMGCTGPKSVI 100

Query: 286 EVKNNLTPLDLMVDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLEKYSNSKVDIHSLSL 345
           EV+N  T LDL+V Q+ESLN KYGCNVPLLLMN+  THD  QK++EKY+NS ++IH+ + 
Sbjct: 101 EVRNGFTFLDLIVIQIESLNKKYGCNVPLLLMNSFNTHDDTQKIVEKYANSNIEIHTFNQ 160

Query: 346 SQQPH--EKSFE-----GHSRKDKLYPSSDHSVVFLSLMKSGTLDLLLVQGKEYALVVDS 398
           SQ P    + F+     GH+ KD  YP   H  VF SLM SG LD LL QGKEY  + +S
Sbjct: 161 SQYPRLVMEDFQPLPSKGHAGKDGWYPPG-HGDVFPSLMNSGKLDALLSQGKEYVFIANS 219

Query: 399 DNVAAVADPKIFNHLIQNQIEYCMEVAPVPSIDLRNSLINLRPGKFQLVDITQNPTK--- 455
           DN+ A+ D KI NHLI NQ EYCMEV P    D++   +    G+ QL++I Q P     
Sbjct: 220 DNLGAIVDIKILNHLINNQNEYCMEVTPKTLADVKGGTLISYEGRVQLLEIAQVPDAHVN 279

Query: 456 --QSGGKFKFINTRSMWVNLRAIKRLIDTDELKVENFSSSKEVNDDQIISRGTAADSAIQ 513
             +S  KFK  NT ++WVNL+AIKRL++ D LK+E   + KEV+  +++   TAA +AI+
Sbjct: 280 EFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKMEIIPNPKEVDGVKVLQLETAAGAAIR 339

Query: 514 FFDHTIGINVAQSRYLPVNSTSDLLLLQSDLYTADEGILVQNPARDNPANPSIELGPEFE 573
           FFDH IGINV +SR+LPV +TSDLLL+QSDLY   +G +++N AR NP+NPSIELGPEF+
Sbjct: 340 FFDHAIGINVPRSRFLPVKATSDLLLVQSDLYMLVDGFVIRNKARTNPSNPSIELGPEFK 399

Query: 574 KVNNFQSRFKSIPSIINLDSLKVEGDVWFGAGITLKGKVSIVAKRGMKLEIPDGIVLENK 633
           KV NF SRFKSIPSI+ LDSLKV GDVWFG G+ LKG VSI AK G+KLEI DG VLENK
Sbjct: 400 KVANFLSRFKSIPSIVELDSLKVSGDVWFGEGVVLKGNVSIAAKSGVKLEISDGAVLENK 459

Query: 634 EIKDVADI 641
            I    DI
Sbjct: 460 VINGPEDI 467
Plays a central role as a glucosyl donor in cellular metabolic pathways.
Musa acuminata (taxid: 4641)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 9
>sp|P19595|UGPA_SOLTU UTP--glucose-1-phosphate uridylyltransferase OS=Solanum tuberosum PE=1 SV=3 Back     alignment and function description
>sp|Q43772|UGPA_HORVU UTP--glucose-1-phosphate uridylyltransferase OS=Hordeum vulgare PE=2 SV=1 Back     alignment and function description
>sp|P57751|UGPA1_ARATH UTP--glucose-1-phosphate uridylyltransferase 1 OS=Arabidopsis thaliana GN=At5g17310 PE=2 SV=1 Back     alignment and function description
>sp|Q9M9P3|UGPA2_ARATH Probable UTP--glucose-1-phosphate uridylyltransferase 2 OS=Arabidopsis thaliana GN=At3g03250 PE=1 SV=1 Back     alignment and function description
>sp|Q9LKG7|UGPA_ASTPN UTP--glucose-1-phosphate uridylyltransferase OS=Astragalus penduliflorus GN=UGP PE=2 SV=1 Back     alignment and function description
>sp|O64459|UGPA_PYRPY UTP--glucose-1-phosphate uridylyltransferase OS=Pyrus pyrifolia PE=2 SV=1 Back     alignment and function description
>sp|Q9GCB9|RT02_ARATH Ribosomal protein S2, mitochondrial OS=Arabidopsis thaliana GN=RPS2 PE=2 SV=1 Back     alignment and function description
>sp|Q54YZ0|UGPA2_DICDI UTP--glucose-1-phosphate uridylyltransferase 2 OS=Dictyostelium discoideum GN=ugpB PE=2 SV=1 Back     alignment and function description
>sp|Q16851|UGPA_HUMAN UTP--glucose-1-phosphate uridylyltransferase OS=Homo sapiens GN=UGP2 PE=1 SV=5 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query641
255565956624 utp-glucose-1-phosphate uridylyltransfer 0.967 0.993 0.627 0.0
449450492639 PREDICTED: UTP--glucose-1-phosphate urid 0.987 0.990 0.601 0.0
84468334628 putative UDP-glucose pyrophosphorylase [ 0.976 0.996 0.594 0.0
356516358616 PREDICTED: UTP--glucose-1-phosphate urid 0.960 1.0 0.589 0.0
357467577632 UTP-glucose-1-phosphate uridylyltransfer 0.973 0.987 0.562 0.0
12585489467 RecName: Full=UTP--glucose-1-phosphate u 0.645 0.886 0.560 1e-126
333035984469 UDP-glucose pyrophosphorylase [Populus d 0.630 0.861 0.588 1e-125
224123982428 predicted protein [Populus trichocarpa] 0.630 0.943 0.604 1e-124
357144620467 PREDICTED: UTP--glucose-1-phosphate urid 0.630 0.865 0.559 1e-123
242063792467 hypothetical protein SORBIDRAFT_04g00132 0.647 0.888 0.552 1e-123
>gi|255565956|ref|XP_002523966.1| utp-glucose-1-phosphate uridylyltransferase, putative [Ricinus communis] gi|223536693|gb|EEF38334.1| utp-glucose-1-phosphate uridylyltransferase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  780 bits (2014), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/645 (62%), Positives = 491/645 (76%), Gaps = 25/645 (3%)

Query: 1   MTLHSIIIQKLLSTNAHLGRRVAAHHFKQYTYGFRNAMAIIDSDKTLICLRNACHFISLL 60
           MT+HSI+IQKLLSTNAHLGRRVAA HFK YTYG RN+ AIIDSDKTLICLRNA  FIS L
Sbjct: 1   MTIHSIVIQKLLSTNAHLGRRVAAQHFKIYTYGIRNSQAIIDSDKTLICLRNAASFISHL 60

Query: 61  AR-QRAAFMFVNTNPLFDEIVLQMTQKIGCYNPNMNALWRMGGFLTNSSSPKKFRSRNKK 119
           AR ++A F+FVNTNPLFDEIV QMT+KIG Y+P  N +WRMGGFLTNS SPKKFRSRNKK
Sbjct: 61  ARDKKARFLFVNTNPLFDEIVEQMTKKIGIYSPRDNVMWRMGGFLTNSFSPKKFRSRNKK 120

Query: 120 IRFGPTKLPDCVVVLDTERKSSVIMEAAKLQVPIVALVDSSMPLDVYSKITYPVPGNDSV 179
           + FGP + PDCVVVLDTERKSSVI+EA +LQVPIVALVDS+MP + + KI YPVP NDSV
Sbjct: 121 VCFGPIQPPDCVVVLDTERKSSVILEADRLQVPIVALVDSTMPWEYFKKIAYPVPANDSV 180

Query: 180 QFVYLLCNMITKTFLVEQKKLGLLKDDEDQRERIDSKKGNGEKVGLIETKRE---IDSKD 236
           QFVYL CNMITKTFL+EQKKL  LK D  +   +  K+   E   + +TK E     + D
Sbjct: 181 QFVYLFCNMITKTFLLEQKKLRALKGDVKEELAVSKKESREEGQQIEQTKSESKISSAMD 240

Query: 237 EILVVPYESLASISEDIAETKMLLDKLVVVKFNGALGTNMGFSGPKSAIEVKNNLTPLDL 296
           E+L+VP+++L   S+DIAE K LL+KLVVVKFNG+LGT +GF GPKS IEV N LT LDL
Sbjct: 241 ELLLVPFQNLPPFSDDIAEIKQLLEKLVVVKFNGSLGTTLGFGGPKSIIEVHNGLTSLDL 300

Query: 297 MVDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLEKYSNSKVDIHSLSLSQQPHEKSFEG 356
           +V+Q+ESLNSKYGC +PL++MNT  THD   K                  +    +S + 
Sbjct: 301 IVNQIESLNSKYGCRIPLVIMNTTRTHDDTLK-----------------GEHLQPESVDE 343

Query: 357 HSRKDKLYPSSDHSVVFLSLMKSGTLDLLLVQGKEYALVVDSDNVAAVADPKIFNHLIQN 416
            + + KLYPS D +  F SLMKSGTLD+LL QGKEY  +V SD+ AA  DPKI NHL Q+
Sbjct: 344 QNTEAKLYPSDD-AAAFFSLMKSGTLDVLLTQGKEYVQIVSSDSTAATIDPKILNHLAQH 402

Query: 417 QIEYCMEVAPVPSIDLRNSLINLRPGKFQLVDITQNPTKQSGGKFKFINTRSMWVNLRAI 476
           +IEYCMEV P  S  LRN+++  R G+FQL +ITQNP+K +  KFKFI+TR++WVNL+AI
Sbjct: 403 KIEYCMEVTPTTSTYLRNNIVTQRQGRFQLTEITQNPSKHAMEKFKFIDTRNLWVNLKAI 462

Query: 477 KRLIDTDELKVENFSSSKEVNDDQIISRGTAADSAIQFFDHTIGINVAQSRYLPVNSTSD 536
           +RL+DTD L   N S+ K V+D       T+ +SAI+ F+  IG+ V Q +++P+N+TSD
Sbjct: 463 QRLVDTDAL---NLSTPKGVDDKASSLPETSINSAIRVFEQPIGLIVPQYQFVPLNATSD 519

Query: 537 LLLLQSDLYTADEGILVQNPARDNPANPSIELGPEFEKVNNFQSRFKSIPSIINLDSLKV 596
           LLLLQSDLY++  G LV N  R NP NPSI+LGPEFEKV++FQSRFKSIPSI+ LDSLKV
Sbjct: 520 LLLLQSDLYSSAGGNLVPNTVRANPVNPSIDLGPEFEKVSDFQSRFKSIPSIVGLDSLKV 579

Query: 597 EGDVWFGAGITLKGKVSIVAKRGMKLEIPDGIVLENKEIKDVADI 641
            GDVWFGAG+ LKG+VSIVA+ G+KLEIPDG+VL+N EIKD ADI
Sbjct: 580 TGDVWFGAGVALKGRVSIVAEPGIKLEIPDGVVLDNTEIKDPADI 624

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449450492|ref|XP_004142996.1| PREDICTED: UTP--glucose-1-phosphate uridylyltransferase-like [Cucumis sativus] gi|449500368|ref|XP_004161078.1| PREDICTED: UTP--glucose-1-phosphate uridylyltransferase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|84468334|dbj|BAE71250.1| putative UDP-glucose pyrophosphorylase [Trifolium pratense] Back     alignment and taxonomy information
>gi|356516358|ref|XP_003526862.1| PREDICTED: UTP--glucose-1-phosphate uridylyltransferase-like [Glycine max] Back     alignment and taxonomy information
>gi|357467577|ref|XP_003604073.1| UTP-glucose-1-phosphate uridylyltransferase [Medicago truncatula] gi|355493121|gb|AES74324.1| UTP-glucose-1-phosphate uridylyltransferase [Medicago truncatula] Back     alignment and taxonomy information
>gi|12585489|sp|Q9SDX3.1|UGPA_MUSAC RecName: Full=UTP--glucose-1-phosphate uridylyltransferase; AltName: Full=UDP-glucose pyrophosphorylase; Short=UDPGP; Short=UGPase gi|6625908|gb|AAF19422.1|AF203909_1 UDP-glucose pyrophosphorylase [Musa acuminata] Back     alignment and taxonomy information
>gi|333035984|gb|AEF13021.1| UDP-glucose pyrophosphorylase [Populus deltoides] Back     alignment and taxonomy information
>gi|224123982|ref|XP_002319212.1| predicted protein [Populus trichocarpa] gi|222857588|gb|EEE95135.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357144620|ref|XP_003573356.1| PREDICTED: UTP--glucose-1-phosphate uridylyltransferase-like [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|242063792|ref|XP_002453185.1| hypothetical protein SORBIDRAFT_04g001320 [Sorghum bicolor] gi|241933016|gb|EES06161.1| hypothetical protein SORBIDRAFT_04g001320 [Sorghum bicolor] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query641
TAIR|locus:2167220470 UGP2 "AT5G17310" [Arabidopsis 0.683 0.931 0.486 2.5e-104
TAIR|locus:2097785469 UGP1 "AT3G03250" [Arabidopsis 0.630 0.861 0.509 3.7e-103
TAIR|locus:2096394219 RPS2 "ribosomal protein S2" [A 0.322 0.945 0.657 2.9e-71
DICTYBASE|DDB_G0277879502 ugpB "UDP-glucose pyrophosphor 0.616 0.786 0.376 2.8e-66
POMBASE|SPCC1322.04506 fyu1 "UTP-glucose-1-phosphate 0.619 0.784 0.357 5.5e-61
SGD|S000001518499 UGP1 "UDP-glucose pyrophosphor 0.617 0.793 0.358 1.5e-60
DICTYBASE|DDB_G0289875511 uppA "UTP-glucose-1-phosphate 0.624 0.782 0.345 1.9e-58
POMBASE|SPCC794.10499 SPCC794.10 "UTP-glucose-1-phos 0.580 0.745 0.334 4e-51
UNIPROTKB|Q2F981483 rps2 "Ribosomal protein S2" [O 0.302 0.401 0.497 7.9e-46
UNIPROTKB|Q35316483 rps2 "ORF483" [Oryza sativa Ja 0.302 0.401 0.497 7.9e-46
TAIR|locus:2167220 UGP2 "AT5G17310" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1033 (368.7 bits), Expect = 2.5e-104, P = 2.5e-104
 Identities = 222/456 (48%), Positives = 296/456 (64%)

Query:   201 GLLKDDEDQRE---RIDSKKGNGEKVGLIETKREIDSKDEILVVPYESLASISEDIAETK 257
             GL +  E+++     + S+  +GE   +  +K +  + DEI VVPY+ +A++SED +ETK
Sbjct:    18 GLTEMSENEKSGFINLVSRYLSGEAQHIEWSKIQTPT-DEI-VVPYDKMANVSEDASETK 75

Query:   258 MLLDKLVVVKFNGALGTNMGFSGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCNVPLLLM 317
              LLDKLVV+K NG LGT MG +GPKS IEV++ LT LDL+V Q+E+LN+KY C VPL+LM
Sbjct:    76 YLLDKLVVLKLNGGLGTTMGCTGPKSVIEVRDGLTFLDLIVIQIENLNNKYNCKVPLVLM 135

Query:   318 NTAETHDRVQKVLEKYSNSKVDIHSLSLSQQPHEKSFE-------GHSRKDKLYPSSDHS 370
             N+  THD  QK++EKY+ S VDIH+ + S+ P   + E       G + KD  YP   H 
Sbjct:   136 NSFNTHDDTQKIVEKYTKSNVDIHTFNQSKYPRVVADEFVPWPSKGKTDKDGWYPPG-HG 194

Query:   371 VVFLSLMKSGTLDLLLVQGKEYXXXXXXXXXXXXXXPKIFNHLIQNQIEYCMEVAPVPSI 430
              VF SLM SG LD  L QGKEY               KI  HLIQN+ EYCMEV P    
Sbjct:   195 DVFPSLMNSGKLDAFLSQGKEYVFIANSDNLGAIVDLKILKHLIQNKNEYCMEVTPKTLA 254

Query:   431 DLRNSLINLRPGKFQLVDITQNPTK-----QSGGKFKFINTRSMWVNLRAIKRLIDTDEL 485
             D++   +    GK QL++I Q P +     +S  KFK  NT ++WVNL+AIK+L++ D L
Sbjct:   255 DVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKKLVEADAL 314

Query:   486 KVENFSSSKEVNDDQIISRGTAADSAIQFFDHTIGINVAQSRYLPVNSTXXXXXXXXXXY 545
             K+E   + KEV+  +++   TAA +AI+FFD+ IG+NV +SR+LPV +T          Y
Sbjct:   315 KMEIIPNPKEVDGVKVLQLETAAGAAIRFFDNAIGVNVPRSRFLPVKATSDLLLVQSDLY 374

Query:   546 TADEGILVQNPARDNPANPSIELGPEFEKVNNFQSRFKSIPSIINLDSLKVEGDVWFGAG 605
             T  +G + +N AR NP NP+IELGPEF+KV +F SRFKSIPSI+ LDSLKV GDVWFG+G
Sbjct:   375 TLVDGFVTRNKARTNPTNPAIELGPEFKKVASFLSRFKSIPSIVELDSLKVSGDVWFGSG 434

Query:   606 ITLKGKVSIVAKRGMKLEIPDGIVLENKEIKDVADI 641
             + LKGKV++ A  G KLEIPD  VLENK+I    D+
Sbjct:   435 VVLKGKVTVKANAGTKLEIPDNAVLENKDINGPEDL 470
GO:0003983 "UTP:glucose-1-phosphate uridylyltransferase activity" evidence=ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0008152 "metabolic process" evidence=IEA;ISS
GO:0016779 "nucleotidyltransferase activity" evidence=IEA
GO:0046686 "response to cadmium ion" evidence=IEP
GO:0005886 "plasma membrane" evidence=IDA
GO:0009651 "response to salt stress" evidence=IEP
GO:0009555 "pollen development" evidence=IGI
GO:0052543 "callose deposition in cell wall" evidence=IGI
GO:0005829 "cytosol" evidence=IDA
GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA
TAIR|locus:2097785 UGP1 "AT3G03250" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2096394 RPS2 "ribosomal protein S2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0277879 ugpB "UDP-glucose pyrophosphorylase 2" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
POMBASE|SPCC1322.04 fyu1 "UTP-glucose-1-phosphate uridylyltransferase Fyu1" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
SGD|S000001518 UGP1 "UDP-glucose pyrophosphorylase (UGPase)" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0289875 uppA "UTP-glucose-1-phosphate uridylyltransferase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
POMBASE|SPCC794.10 SPCC794.10 "UTP-glucose-1-phosphate uridylyltransferase-like" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
UNIPROTKB|Q2F981 rps2 "Ribosomal protein S2" [Oryza sativa Indica Group (taxid:39946)] Back     alignment and assigned GO terms
UNIPROTKB|Q35316 rps2 "ORF483" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P57751UGPA1_ARATH2, ., 7, ., 7, ., 90.54780.63020.8595yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer2.7.7.90.824
3rd Layer2.7.70.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query641
PLN02474469 PLN02474, PLN02474, UTP--glucose-1-phosphate uridy 1e-174
pfam01704417 pfam01704, UDPGP, UTP--glucose-1-phosphate uridyly 1e-116
cd00897300 cd00897, UGPase_euk, Eukaryotic UGPase catalyses t 4e-93
cd01425193 cd01425, RPS2, Ribosomal protein S2 (RPS2), involv 4e-53
COG4284472 COG4284, COG4284, UDP-glucose pyrophosphorylase [C 3e-50
pfam00318205 pfam00318, Ribosomal_S2, Ribosomal protein S2 4e-46
cd04180266 cd04180, UGPase_euk_like, Eukaryotic UGPase-like i 7e-37
COG0052252 COG0052, RpsB, Ribosomal protein S2 [Translation, 4e-19
TIGR01011225 TIGR01011, rpsB_bact, ribosomal protein S2, bacter 1e-17
PRK05299258 PRK05299, rpsB, 30S ribosomal protein S2; Provisio 1e-17
PRK12311326 PRK12311, rpsB, 30S ribosomal protein S2/unknown d 7e-14
CHL00067230 CHL00067, rps2, ribosomal protein S2 5e-13
PRK04020204 PRK04020, rps2P, 30S ribosomal protein S2; Provisi 4e-05
cd06424315 cd06424, UGGPase, UGGPase catalyzes the synthesis 2e-04
cd04193323 cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphoryl 2e-04
PTZ00254249 PTZ00254, PTZ00254, 40S ribosomal protein SA; Prov 4e-04
TIGR01012196 TIGR01012, Sa_S2_E_A, ribosomal protein Sa(cytosol 7e-04
PTZ00339482 PTZ00339, PTZ00339, UDP-N-acetylglucosamine pyroph 0.002
>gnl|CDD|178092 PLN02474, PLN02474, UTP--glucose-1-phosphate uridylyltransferase Back     alignment and domain information 
 Score =  502 bits (1294), Expect = e-174
 Identities = 241/418 (57%), Positives = 303/418 (72%), Gaps = 14/418 (3%)

Query: 236 DEILVVPYESLASISEDIAETKMLLDKLVVVKFNGALGTNMGFSGPKSAIEVKNNLTPLD 295
           DE+ VVPY+ LA + ED  ETK LLDKLVV+K NG LGT MG +GPKS IEV+N LT LD
Sbjct: 54  DEV-VVPYDKLAPVPEDPEETKKLLDKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLD 112

Query: 296 LMVDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLEKYSNSKVDIHSLSLSQQPHEKSFE 355
           L+V Q+E+LN KYGCNVPLLLMN+  THD  QK++EKY+NS ++IH+ + SQ P   + +
Sbjct: 113 LIVIQIENLNKKYGCNVPLLLMNSFNTHDDTQKIVEKYTNSNIEIHTFNQSQYPRVVADD 172

Query: 356 -------GHSRKDKLYPSSDHSVVFLSLMKSGTLDLLLVQGKEYALVVDSDNVAAVADPK 408
                  G + KD  YP   H  VF SLM SG LD LL QGKEY  + +SDN+ A+ D K
Sbjct: 173 FVPWPSKGKTDKDGWYPPG-HGDVFPSLMNSGKLDALLSQGKEYVFIANSDNLGAIVDLK 231

Query: 409 IFNHLIQNQIEYCMEVAPVPSIDLRNSLINLRPGKFQLVDITQNPTK-----QSGGKFKF 463
           I NHLIQN+ EYCMEV P    D++   +    GK QL++I Q P +     +S  KFK 
Sbjct: 232 ILNHLIQNKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKI 291

Query: 464 INTRSMWVNLRAIKRLIDTDELKVENFSSSKEVNDDQIISRGTAADSAIQFFDHTIGINV 523
            NT ++WVNL+AIKRL++ D LK+E   + KEV+  +++   TAA +AI+FFD+ IGINV
Sbjct: 292 FNTNNLWVNLKAIKRLVEADALKMEIIPNPKEVDGVKVLQLETAAGAAIRFFDNAIGINV 351

Query: 524 AQSRYLPVNSTSDLLLLQSDLYTADEGILVQNPARDNPANPSIELGPEFEKVNNFQSRFK 583
            +SR+LPV +TSDLLL+QSDLYT  +G +++N AR NP+NPSIELGPEF+KV NF SRFK
Sbjct: 352 PRSRFLPVKATSDLLLVQSDLYTLVDGFVIRNKARTNPSNPSIELGPEFKKVANFLSRFK 411

Query: 584 SIPSIINLDSLKVEGDVWFGAGITLKGKVSIVAKRGMKLEIPDGIVLENKEIKDVADI 641
           SIPSI+ LDSLKV GDVWFG+GI LKGKV+I AK G+KLEIPDG VLENK+I    D+
Sbjct: 412 SIPSIVELDSLKVSGDVWFGSGIVLKGKVTITAKSGVKLEIPDGAVLENKDINGPEDL 469

Length = 469
>gnl|CDD|201928 pfam01704, UDPGP, UTP--glucose-1-phosphate uridylyltransferase Back     alignment and domain information
>gnl|CDD|132998 cd00897, UGPase_euk, Eukaryotic UGPase catalyses the synthesis of UDP-Glucose Back     alignment and domain information
>gnl|CDD|100106 cd01425, RPS2, Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome Back     alignment and domain information
>gnl|CDD|226734 COG4284, COG4284, UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|215856 pfam00318, Ribosomal_S2, Ribosomal protein S2 Back     alignment and domain information
>gnl|CDD|133023 cd04180, UGPase_euk_like, Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes Back     alignment and domain information
>gnl|CDD|223130 COG0052, RpsB, Ribosomal protein S2 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|130084 TIGR01011, rpsB_bact, ribosomal protein S2, bacterial type Back     alignment and domain information
>gnl|CDD|235396 PRK05299, rpsB, 30S ribosomal protein S2; Provisional Back     alignment and domain information
>gnl|CDD|183428 PRK12311, rpsB, 30S ribosomal protein S2/unknown domain fusion protein; Provisional Back     alignment and domain information
>gnl|CDD|177007 CHL00067, rps2, ribosomal protein S2 Back     alignment and domain information
>gnl|CDD|235201 PRK04020, rps2P, 30S ribosomal protein S2; Provisional Back     alignment and domain information
>gnl|CDD|133046 cd06424, UGGPase, UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose Back     alignment and domain information
>gnl|CDD|133036 cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc Back     alignment and domain information
>gnl|CDD|240331 PTZ00254, PTZ00254, 40S ribosomal protein SA; Provisional Back     alignment and domain information
>gnl|CDD|188101 TIGR01012, Sa_S2_E_A, ribosomal protein Sa(cytosolic)/S2(archaeal) Back     alignment and domain information
>gnl|CDD|240368 PTZ00339, PTZ00339, UDP-N-acetylglucosamine pyrophosphorylase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 641
KOG2638498 consensus UDP-glucose pyrophosphorylase [Carbohydr 100.0
PLN02474469 UTP--glucose-1-phosphate uridylyltransferase 100.0
PF01704420 UDPGP: UTP--glucose-1-phosphate uridylyltransferas 100.0
PLN02830615 UDP-sugar pyrophosphorylase 100.0
cd00897300 UGPase_euk Eukaryotic UGPase catalyses the synthes 100.0
COG4284472 UDP-glucose pyrophosphorylase [Carbohydrate transp 100.0
PLN02435493 probable UDP-N-acetylglucosamine pyrophosphorylase 100.0
cd04193323 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catala 100.0
cd06424315 UGGPase UGGPase catalyzes the synthesis of UDP-Glu 100.0
PTZ00339482 UDP-N-acetylglucosamine pyrophosphorylase; Provisi 100.0
cd04180266 UGPase_euk_like Eukaryotic UGPase-like includes UD 100.0
KOG2388477 consensus UDP-N-acetylglucosamine pyrophosphorylas 100.0
COG0052252 RpsB Ribosomal protein S2 [Translation, ribosomal 100.0
PRK05299258 rpsB 30S ribosomal protein S2; Provisional 100.0
TIGR01012196 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archa 100.0
PRK04020204 rps2P 30S ribosomal protein S2; Provisional 100.0
PRK12311326 rpsB 30S ribosomal protein S2/unknown domain fusio 100.0
TIGR01011225 rpsB_bact ribosomal protein S2, bacterial type. TI 100.0
PTZ00254249 40S ribosomal protein SA; Provisional 100.0
CHL00067230 rps2 ribosomal protein S2 100.0
KOG0832251 consensus Mitochondrial/chloroplast ribosomal prot 100.0
cd01425193 RPS2 Ribosomal protein S2 (RPS2), involved in form 100.0
PF00318211 Ribosomal_S2: Ribosomal protein S2; InterPro: IPR0 100.0
KOG0830254 consensus 40S ribosomal protein SA (P40)/Laminin r 99.94
COG1207 460 GlmU N-acetylglucosamine-1-phosphate uridyltransfe 98.7
PRK14359430 glmU bifunctional N-acetylglucosamine-1-phosphate 98.66
PRK05293380 glgC glucose-1-phosphate adenylyltransferase; Prov 98.63
PRK14356 456 glmU bifunctional N-acetylglucosamine-1-phosphate 98.53
PRK00844407 glgC glucose-1-phosphate adenylyltransferase; Prov 98.43
TIGR01208353 rmlA_long glucose-1-phosphate thymidylylransferase 98.38
COG1208358 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas 98.36
PRK14352 482 glmU bifunctional N-acetylglucosamine-1-phosphate 98.36
cd04189236 G1P_TT_long G1P_TT_long represents the long form o 98.35
PRK14360 450 glmU bifunctional N-acetylglucosamine-1-phosphate 98.34
PRK14353 446 glmU bifunctional N-acetylglucosamine-1-phosphate 98.31
PRK00725425 glgC glucose-1-phosphate adenylyltransferase; Prov 98.3
cd06426220 NTP_transferase_like_2 NTP_trnasferase_like_2 is a 98.29
cd06915223 NTP_transferase_WcbM_like WcbM_like is a subfamily 98.29
TIGR02092369 glgD glucose-1-phosphate adenylyltransferase, GlgD 98.26
PRK14358 481 glmU bifunctional N-acetylglucosamine-1-phosphate 98.23
PRK02862429 glgC glucose-1-phosphate adenylyltransferase; Prov 98.22
PRK14355 459 glmU bifunctional N-acetylglucosamine-1-phosphate 98.16
PLN02241436 glucose-1-phosphate adenylyltransferase 98.15
cd02540229 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU 98.12
PF00483248 NTP_transferase: Nucleotidyl transferase This Pros 98.11
cd04181217 NTP_transferase NTP_transferases catalyze the tran 98.04
PRK14357 448 glmU bifunctional N-acetylglucosamine-1-phosphate 98.03
TIGR01173 451 glmU UDP-N-acetylglucosamine diphosphorylase/gluco 97.95
cd06425233 M1P_guanylylT_B_like_N N-terminal domain of the M1 97.9
cd02538240 G1P_TT_short G1P_TT_short is the short form of glu 97.89
cd06422221 NTP_transferase_like_1 NTP_transferase_like_1 is a 97.87
cd02509274 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransf 97.86
cd04197217 eIF-2B_epsilon_N The N-terminal domain of epsilon 97.82
TIGR02623254 G1P_cyt_trans glucose-1-phosphate cytidylyltransfe 97.78
TIGR02091361 glgC glucose-1-phosphate adenylyltransferase. This 97.77
cd06428257 M1P_guanylylT_A_like_N N-terminal domain of M1P_gu 97.68
PRK05450245 3-deoxy-manno-octulosonate cytidylyltransferase; P 97.66
TIGR01105297 galF UTP-glucose-1-phosphate uridylyltransferase, 97.65
TIGR01207286 rmlA glucose-1-phosphate thymidylyltransferase, sh 97.61
PRK15480292 glucose-1-phosphate thymidylyltransferase RfbA; Pr 97.6
PRK14354 458 glmU bifunctional N-acetylglucosamine-1-phosphate 97.58
cd02524253 G1P_cytidylyltransferase G1P_cytidylyltransferase 97.57
PRK10122297 GalU regulator GalF; Provisional 97.54
PRK09451 456 glmU bifunctional N-acetylglucosamine-1-phosphate 97.53
cd02508200 ADP_Glucose_PP ADP-glucose pyrophosphorylase is in 97.39
cd02523229 PC_cytidylyltransferase Phosphocholine cytidylyltr 97.37
cd04198214 eIF-2B_gamma_N The N-terminal domain of gamma subu 97.3
cd02541267 UGPase_prokaryotic Prokaryotic UGPase catalyses th 97.23
COG0448393 GlgC ADP-glucose pyrophosphorylase [Carbohydrate t 97.17
PF12804160 NTP_transf_3: MobA-like NTP transferase domain; PD 97.03
cd02517239 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes th 96.94
PLN02728252 2-C-methyl-D-erythritol 4-phosphate cytidylyltrans 96.93
cd04183231 GT2_BcE_like GT2_BcbE_like is likely involved in t 96.93
KOG1322371 consensus GDP-mannose pyrophosphorylase/mannose-1- 96.92
PF14134513 DUF4301: Domain of unknown function (DUF4301) 96.92
TIGR01479468 GMP_PMI mannose-1-phosphate guanylyltransferase/ma 96.9
TIGR01099260 galU UTP-glucose-1-phosphate uridylyltransferase. 96.78
PLN02917293 CMP-KDO synthetase 96.76
COG1213239 Predicted sugar nucleotidyltransferases [Cell enve 96.75
TIGR00454183 conserved hypothetical protein TIGR00454. At this 96.65
PRK13385230 2-C-methyl-D-erythritol 4-phosphate cytidylyltrans 96.63
PRK00560196 molybdopterin-guanine dinucleotide biosynthesis pr 96.61
PF01128221 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidyly 96.56
PRK13389302 UTP--glucose-1-phosphate uridylyltransferase subun 96.46
PRK14489366 putative bifunctional molybdopterin-guanine dinucl 96.41
PRK13368238 3-deoxy-manno-octulosonate cytidylyltransferase; P 96.3
cd02507216 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma 96.13
COG2266177 GTP:adenosylcobinamide-phosphate guanylyltransfera 96.06
COG1209286 RfbA dTDP-glucose pyrophosphorylase [Cell envelope 95.97
cd04182186 GT_2_like_f GT_2_like_f is a subfamily of the glyc 95.93
PRK09382378 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosp 95.9
cd02513223 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N- 95.89
PRK02726200 molybdopterin-guanine dinucleotide biosynthesis pr 95.76
cd02503181 MobA MobA catalyzes the formation of molybdopterin 95.66
TIGR03202190 pucB xanthine dehydrogenase accessory protein pucB 95.53
TIGR02665186 molyb_mobA molybdopterin-guanine dinucleotide bios 95.5
PRK00317193 mobA molybdopterin-guanine dinucleotide biosynthes 95.43
PRK00155227 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyl 95.41
cd02516218 CDP-ME_synthetase CDP-ME synthetase is involved in 95.39
COG0746192 MobA Molybdopterin-guanine dinucleotide biosynthes 95.36
TIGR00453217 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyl 95.33
PRK14490369 putative bifunctional molybdopterin-guanine dinucl 95.3
TIGR03310188 matur_ygfJ molybdenum hydroxylase accessory protei 95.3
KOG1460407 consensus GDP-mannose pyrophosphorylase [Carbohydr 95.17
PRK14500346 putative bifunctional molybdopterin-guanine dinucl 94.96
COG4284472 UDP-glucose pyrophosphorylase [Carbohydrate transp 94.47
COG0836333 {ManC} Mannose-1-phosphate guanylyltransferase [Ce 94.24
PRK15460478 cpsB mannose-1-phosphate guanyltransferase; Provis 94.17
COG1211230 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synt 94.16
cd05006177 SIS_GmhA Phosphoheptose isomerase is a member of t 92.94
PRK05441299 murQ N-acetylmuramic acid-6-phosphate etherase; Re 92.1
PRK10886196 DnaA initiator-associating protein DiaA; Provision 91.38
TIGR00466238 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransfe 91.23
PRK13938196 phosphoheptose isomerase; Provisional 90.84
PRK12570296 N-acetylmuramic acid-6-phosphate etherase; Reviewe 90.38
cd05007257 SIS_Etherase N-acetylmuramic acid 6-phosphate ethe 90.32
PRK10892326 D-arabinose 5-phosphate isomerase; Provisional 88.67
PRK11557278 putative DNA-binding transcriptional regulator; Pr 88.54
TIGR03127179 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of 88.17
PRK00414192 gmhA phosphoheptose isomerase; Reviewed 87.96
cd05005179 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI 87.92
PF13580138 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_ 87.51
PRK13936197 phosphoheptose isomerase; Provisional 87.1
TIGR00441154 gmhA phosphoheptose isomerase. Involved in lipopol 86.71
cd02518233 GT2_SpsF SpsF is a glycosyltrnasferase implicated 86.67
PRK15482285 transcriptional regulator MurR; Provisional 86.19
TIGR00274291 N-acetylmuramic acid 6-phosphate etherase. This pr 85.26
PRK11302284 DNA-binding transcriptional regulator HexR; Provis 84.86
PRK13937188 phosphoheptose isomerase; Provisional 84.82
COG4750231 LicC CTP:phosphocholine cytidylyltransferase invol 84.08
COG2068199 Uncharacterized MobA-related protein [General func 82.4
PRK02947246 hypothetical protein; Provisional 82.36
>KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1.6e-122  Score=964.24  Aligned_cols=405  Identities=45%  Similarity=0.759  Sum_probs=393.2

Q ss_pred             ccCCCCCccccCCCcCCCcccHHHHHhhcCcEEEEEEcCCCCCCCCCCCCCeeeecCCCCChHHHHHHHHHHHHhhhCCC
Q 006541          232 IDSKDEILVVPYESLASISEDIAETKMLLDKLVVVKFNGALGTNMGFSGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCN  311 (641)
Q Consensus       232 l~~~~~~~~~~y~~l~~~~~~~~~~~~~l~k~avv~LaGGlGTrlG~~~pK~~l~v~~~~tfldl~~~qi~~l~~~~g~~  311 (641)
                      |++++++.++||++++..    +..+.+|+|+||+|||||+||+|||.||||+++|++|.|||||.++||++||++|+++
T Consensus        77 I~~p~~d~vv~y~~i~~~----~~~~~~L~KLavlKLNGGlGttmGc~gPKS~ieVR~g~tFLDL~V~QIe~LN~~Y~~d  152 (498)
T KOG2638|consen   77 IRPPPEDAVVPYDDIKNV----ELSKSLLNKLAVLKLNGGLGTTMGCKGPKSVIEVRDGLTFLDLTVRQIENLNKTYNVD  152 (498)
T ss_pred             ccCCChhhccccccccch----hhHHHhhhheEEEEecCCcCCccccCCCceeEEEcCCCchhHHHHHHHHHHHhhcCCC
Confidence            455679999999999865    4678999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEecCccchHHHHHHHHHcCCCCceEEEEecCCccccc-----cCC---CCCCCccccCCCChhhHHHHHHhcChhH
Q 006541          312 VPLLLMNTAETHDRVQKVLEKYSNSKVDIHSLSLSQQPHEK-----SFE---GHSRKDKLYPSSDHSVVFLSLMKSGTLD  383 (641)
Q Consensus       312 iPl~iMtS~~T~~~T~~~l~k~~~fg~~v~~f~Q~~~P~~~-----~~~---~~~~~~~~~P~GhG~di~~aL~~sG~Ld  383 (641)
                      +||++||||+|+++|.++++||.++.++|++|.|+++|+++     |..   ++.+..+||||||| |+|.+|+.||+||
T Consensus       153 VPlvLMNSfnTdedT~kil~ky~~~kv~i~TF~QS~~PRi~~etlLPv~~~~~d~~~d~WYPPGHG-d~f~sl~nSG~Ld  231 (498)
T KOG2638|consen  153 VPLVLMNSFNTDEDTQKILKKYAGSKVDIKTFNQSKYPRIDKETLLPVPKLEADSDNEAWYPPGHG-DLFDSLHNSGLLD  231 (498)
T ss_pred             CCEEEecccccchHHHHHHHHhcCCceeEEEeccccCCccccccccCCCcccCCCCcccccCCCCc-cHHHHHhccchHH
Confidence            99999999999999999999999999999999999999998     333   34567999999999 9999999999999


Q ss_pred             HHHHcCceEEEEEcCcccccccCHHHHHHHhhcCCceEEEEeccCCCCCcceEEEeeCCeEEEEEecCCCccccCC----
Q 006541          384 LLLVQGKEYALVVDSDNVAAVADPKIFNHLIQNQIEYCMEVAPVPSIDLRNSLINLRPGKFQLVDITQNPTKQSGG----  459 (641)
Q Consensus       384 ~l~~~G~eyi~v~nvDNL~~~~Dp~~lg~~~~~~~~~~~evv~k~~~d~kgG~l~~~~g~~~lvEysq~~~~~~~~----  459 (641)
                      +|+++|+||+||+|+|||||++|..||.|++.++++|+|||++||.+|.|||+++.++|+++++||+|+|++++++    
T Consensus       232 ~llaqGkEylFVSNiDNLGAtvDL~ILn~~i~~~~ey~MEvTdKT~aDvKgGtLi~y~G~lrlLEiaQVP~ehv~eFkS~  311 (498)
T KOG2638|consen  232 KLLAQGKEYLFVSNIDNLGATVDLNILNHVINNNIEYLMEVTDKTRADVKGGTLIQYEGKLRLLEIAQVPKEHVDEFKSI  311 (498)
T ss_pred             HHHhCCceEEEEeccccccceeeHHHHHHHhcCCCceEEEecccchhhcccceEEeecCEEEEEEeccCChhHhhhhccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999988    


Q ss_pred             -CCceeeeeceeeeHHHHHHHhhcCCCccceeecccccC-CCCchhhhHhhhhHhhcCCCceEEEEeccccccccCCchh
Q 006541          460 -KFKFINTRSMWVNLRAIKRLIDTDELKVENFSSSKEVN-DDQIISRGTAADSAIQFFDHTIGINVAQSRYLPVNSTSDL  537 (641)
Q Consensus       460 -~~~~fNtnni~~~l~~l~~~~~~~~~~lp~~~n~K~v~-~~~~~qlE~~i~d~i~~f~~~~~i~V~R~rF~PvKn~~dl  537 (641)
                       +|++|||||+|++|.++++++++..+.|++|+|+|+++ +.+++||||++|+||++|+++.|+.|||+||+|||+|+||
T Consensus       312 kkFkifNTNNlWinLkavKrlve~~~l~meIi~N~kti~~~~~viQleTa~GaaIk~F~na~gv~VpRsRFlPVKt~sDL  391 (498)
T KOG2638|consen  312 KKFKIFNTNNLWINLKAVKKLVEENALNMEIIVNPKTIDRGIEVIQLETAAGAAIKFFDNAIGVNVPRSRFLPVKTCSDL  391 (498)
T ss_pred             eeEEEeccCCeEEehHHHHHHhhcCcccceeecChhhccCCceEEEEhhhhhHHHHhCCCceeeeccccccccccccccc
Confidence             99999999999999999999999999999999999999 8899999999999999999999999999999999999999


Q ss_pred             hhhhhhhcccccCceeeCCCCCCCCCCeEEeCCCcccHHhHhhhcCCCCCCCCcceEEEecceEEccCcEEEEEEEEEcC
Q 006541          538 LLLQSDLYTADEGILVQNPARDNPANPSIELGPEFEKVNNFQSRFKSIPSIINLDSLKVEGDVWFGAGITLKGKVSIVAK  617 (641)
Q Consensus       538 l~~~sd~y~~~~g~l~~~~~r~~~~~P~i~L~~~f~~~~~~~~rf~~~p~i~~~~~L~V~Gdv~fg~~v~l~G~v~i~a~  617 (641)
                      |+++||+|.+++|.+.++|.|.++..|+|+||++|+++++|..|||+||+|++|+||||+||||||+||+|+|+|+|+|+
T Consensus       392 lLv~S~Ly~ld~Gsl~l~~~r~~~t~P~vkLg~~F~kv~~f~~rfp~iP~ileLdhLtVsGdV~FGknV~LkGtViIia~  471 (498)
T KOG2638|consen  392 LLVMSNLYDLDNGSLTLSPSRFGPTPPLVKLGSEFKKVEDFLGRFPGIPDILELDHLTVSGDVWFGKNVSLKGTVIIIAN  471 (498)
T ss_pred             eeeecceeeccCCeEEechhhcCCCCCeeecchhhhHHHHHHhcCCCCCccceeceEEEeccEEeccceEEeeEEEEEec
Confidence            99999999999999999999998899999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeEecCCCCeeecceeeccCCC
Q 006541          618 RGMKLEIPDGIVLENKEIKDVADI  641 (641)
Q Consensus       618 ~~~~~~ip~g~~l~n~~~~~~~~~  641 (641)
                      +|.+++||||++|||++|+||++|
T Consensus       472 ~~~~i~IP~gsVLEn~~v~gn~~i  495 (498)
T KOG2638|consen  472 EGDRIDIPDGSVLENKIVSGNLRI  495 (498)
T ss_pred             CCCeeecCCCCeeecceEeccccc
Confidence            999999999999999999999987

>PLN02474 UTP--glucose-1-phosphate uridylyltransferase Back     alignment and domain information
>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2 Back     alignment and domain information
>PLN02830 UDP-sugar pyrophosphorylase Back     alignment and domain information
>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose Back     alignment and domain information
>COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase Back     alignment and domain information
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc Back     alignment and domain information
>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose Back     alignment and domain information
>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional Back     alignment and domain information
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes Back     alignment and domain information
>KOG2388 consensus UDP-N-acetylglucosamine pyrophosphorylase [Cell wall/membrane/envelope biogenesis] Back     alignment and domain information
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK05299 rpsB 30S ribosomal protein S2; Provisional Back     alignment and domain information
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal) Back     alignment and domain information
>PRK04020 rps2P 30S ribosomal protein S2; Provisional Back     alignment and domain information
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional Back     alignment and domain information
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type Back     alignment and domain information
>PTZ00254 40S ribosomal protein SA; Provisional Back     alignment and domain information
>CHL00067 rps2 ribosomal protein S2 Back     alignment and domain information
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome Back     alignment and domain information
>PF00318 Ribosomal_S2: Ribosomal protein S2; InterPro: IPR001865 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>KOG0830 consensus 40S ribosomal protein SA (P40)/Laminin receptor 1 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional Back     alignment and domain information
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional Back     alignment and domain information
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional Back     alignment and domain information
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional Back     alignment and domain information
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form Back     alignment and domain information
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional Back     alignment and domain information
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase Back     alignment and domain information
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional Back     alignment and domain information
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional Back     alignment and domain information
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional Back     alignment and domain information
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family Back     alignment and domain information
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases Back     alignment and domain information
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit Back     alignment and domain information
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional Back     alignment and domain information
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional Back     alignment and domain information
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional Back     alignment and domain information
>PLN02241 glucose-1-phosphate adenylyltransferase Back     alignment and domain information
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU Back     alignment and domain information
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry Back     alignment and domain information
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars Back     alignment and domain information
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional Back     alignment and domain information
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase Back     alignment and domain information
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins Back     alignment and domain information
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase Back     alignment and domain information
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family Back     alignment and domain information
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose Back     alignment and domain information
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2 Back     alignment and domain information
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase Back     alignment and domain information
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase Back     alignment and domain information
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase Back     alignment and domain information
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional Back     alignment and domain information
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit Back     alignment and domain information
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form Back     alignment and domain information
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional Back     alignment and domain information
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional Back     alignment and domain information
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose Back     alignment and domain information
>PRK10122 GalU regulator GalF; Provisional Back     alignment and domain information
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional Back     alignment and domain information
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch Back     alignment and domain information
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline Back     alignment and domain information
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2 Back     alignment and domain information
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose Back     alignment and domain information
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B Back     alignment and domain information
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide Back     alignment and domain information
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Back     alignment and domain information
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule Back     alignment and domain information
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis] Back     alignment and domain information
>PF14134 DUF4301: Domain of unknown function (DUF4301) Back     alignment and domain information
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase Back     alignment and domain information
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase Back     alignment and domain information
>PLN02917 CMP-KDO synthetase Back     alignment and domain information
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR00454 conserved hypothetical protein TIGR00454 Back     alignment and domain information
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional Back     alignment and domain information
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional Back     alignment and domain information
>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate [] Back     alignment and domain information
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional Back     alignment and domain information
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional Back     alignment and domain information
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional Back     alignment and domain information
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity Back     alignment and domain information
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism] Back     alignment and domain information
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function Back     alignment and domain information
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional Back     alignment and domain information
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety Back     alignment and domain information
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional Back     alignment and domain information
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide Back     alignment and domain information
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB Back     alignment and domain information
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial Back     alignment and domain information
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed Back     alignment and domain information
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed Back     alignment and domain information
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production Back     alignment and domain information
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism] Back     alignment and domain information
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Back     alignment and domain information
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional Back     alignment and domain information
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family Back     alignment and domain information
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional Back     alignment and domain information
>COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional Back     alignment and domain information
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism] Back     alignment and domain information
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily Back     alignment and domain information
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed Back     alignment and domain information
>PRK10886 DnaA initiator-associating protein DiaA; Provisional Back     alignment and domain information
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase Back     alignment and domain information
>PRK13938 phosphoheptose isomerase; Provisional Back     alignment and domain information
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed Back     alignment and domain information
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase Back     alignment and domain information
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional Back     alignment and domain information
>PRK11557 putative DNA-binding transcriptional regulator; Provisional Back     alignment and domain information
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase Back     alignment and domain information
>PRK00414 gmhA phosphoheptose isomerase; Reviewed Back     alignment and domain information
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI) Back     alignment and domain information
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D Back     alignment and domain information
>PRK13936 phosphoheptose isomerase; Provisional Back     alignment and domain information
>TIGR00441 gmhA phosphoheptose isomerase Back     alignment and domain information
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat Back     alignment and domain information
>PRK15482 transcriptional regulator MurR; Provisional Back     alignment and domain information
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase Back     alignment and domain information
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional Back     alignment and domain information
>PRK13937 phosphoheptose isomerase; Provisional Back     alignment and domain information
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>COG2068 Uncharacterized MobA-related protein [General function prediction only] Back     alignment and domain information
>PRK02947 hypothetical protein; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query641
1z90_A469 X-Ray Structure Of Gene Product From Arabidopsis Th 1e-106
2icx_A469 Crystal Structure Of A Putative Udp-Glucose Pyropho 1e-106
3r2w_A528 Crystal Strucutre Of Udp-Glucose Pyrophosphorylase 4e-66
2i5k_A488 Crystal Structure Of Ugp1p Length = 488 9e-63
3gue_A484 Crystal Structure Of Udp-Glucose Phosphorylase From 1e-32
1i94_B255 Crystal Structures Of The Small Ribosomal Subunit W 2e-14
1fjg_B256 Structure Of The Thermus Thermophilus 30s Ribosomal 2e-14
2e5l_B227 A Snapshot Of The 30s Ribosomal Subunit Capturing M 3e-14
3fic_B235 T. Thermophilus 70s Ribosome In Complex With Mrna, 6e-14
1pns_B234 Crystal Structure Of A Streptomycin Dependent Ribos 7e-14
1x18_E231 Contact Sites Of Era Gtpase On The Thermus Thermoph 8e-14
1vs5_B241 Crystal Structure Of The Bacterial Ribosome From Es 5e-08
1p87_B240 Real Space Refined Coordinates Of The 30s Subunit F 5e-08
2gy9_B236 Structure Of The 30s Subunit Of A Pre-Translocation 8e-08
3fih_B218 Ternary Complex-Bound E.Coli 70s Ribosome. This Ent 2e-07
2oef_A505 Open And Closed Structures Of The Udp-Glucose Pyrop 3e-07
>pdb|1Z90|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana At3g03250, A Putative Udp-Glucose Pyrophosphorylase Length = 469 Back     alignment and structure 
Iteration: 1

 Score =  382 bits (981), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 213/418 (50%), Positives = 277/418 (66%), Gaps = 14/418 (3%)
Query: 236 DEILVVPYESLASISEDIAETKMLLDKLVVVKFNGALGTNMGFSGPKSAIEVKNNLTPLD 295
           DEI VVPYE +  +S+D+AETK LLDKLVV+K NG LGT MG +GPKS IEV++ LT LD
Sbjct: 54  DEI-VVPYEKMTPVSQDVAETKNLLDKLVVLKLNGGLGTTMGCTGPKSVIEVRDGLTFLD 112
Query: 296 LMVDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLEKYSNSKVDIHSLSLSQQPHEKSFE 355
           L+V Q+E+LN+KYGC VPL+LMN+  THD   K++EKY+NS VDIH+ + S+ P   + E
Sbjct: 113 LIVIQIENLNNKYGCKVPLVLMNSFNTHDDTHKIVEKYTNSNVDIHTFNQSKYPRVVADE 172
Query: 356 -------GHSRKDKLYPSSDHSVVFLSLMKSGTLDLLLVQGKEYXXXXXXXXXXXXXXPK 408
                  G + K+  YP   H  VF +LM SG LD  L QGKEY                
Sbjct: 173 FVPWPSKGKTDKEGWYPPG-HGDVFPALMNSGKLDTFLSQGKEYVFVANSDNLGAIVDLT 231
Query: 409 IFNHLIQNQIEYCMEVAPVPSIDLRNSLINLRPGKFQLVDITQNPTK-----QSGGKFKF 463
           I  HLIQN+ EYCMEV P    D++   +    GK QL++I Q P +     +S  KFK 
Sbjct: 232 ILKHLIQNKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKI 291
Query: 464 INTRSMWVNLRAIKRLIDTDELKVENFSSSKEVNDDQIISRGTAADSAIQFFDHTIGINV 523
            NT ++WVNL+AIK+L++ D LK+E   + KEV+  +++   TAA +AI+FFD+ IG+NV
Sbjct: 292 FNTNNLWVNLKAIKKLVEADALKMEIIPNPKEVDGVKVLQLETAAGAAIRFFDNAIGVNV 351
Query: 524 AQSRYLPVNSTXXXXXXXXXXYTADEGILVQNPARDNPANPSIELGPEFEKVNNFQSRFK 583
            +SR+LPV ++          YT  +G + +N AR NP+NPSIELGPEF+KV  F SRFK
Sbjct: 352 PRSRFLPVKASSDLLLVQSDLYTLVDGFVTRNKARTNPSNPSIELGPEFKKVATFLSRFK 411
Query: 584 SIPSIINLDSLKVEGDVWFGAGITLKGKVSIVAKRGMKLEIPDGIVLENKEIKDVADI 641
           SIPSI+ LDSLKV GDVWFG+ I LKGKV++ AK G+KLEIPD  V+ENK I    D+
Sbjct: 412 SIPSIVELDSLKVSGDVWFGSSIVLKGKVTVAAKSGVKLEIPDRAVVENKNINGPEDL 469
>pdb|2ICX|A Chain A, Crystal Structure Of A Putative Udp-Glucose Pyrophosphorylase From Arabidopsis Thaliana With Bound Utp Length = 469 Back     alignment and structure
>pdb|3R2W|A Chain A, Crystal Strucutre Of Udp-Glucose Pyrophosphorylase Of Homo Sapiens Length = 528 Back     alignment and structure
>pdb|2I5K|A Chain A, Crystal Structure Of Ugp1p Length = 488 Back     alignment and structure
>pdb|3GUE|A Chain A, Crystal Structure Of Udp-Glucose Phosphorylase From Trypanosoma Brucei, (Tb10.389.0330) Length = 484 Back     alignment and structure
>pdb|1I94|B Chain B, Crystal Structures Of The Small Ribosomal Subunit With Tetracycline, Edeine And If3 Length = 255 Back     alignment and structure
>pdb|1FJG|B Chain B, Structure Of The Thermus Thermophilus 30s Ribosomal Subunit In Complex With The Antibiotics Streptomycin, Spectinomycin, And Paromomycin Length = 256 Back     alignment and structure
>pdb|2E5L|B Chain B, A Snapshot Of The 30s Ribosomal Subunit Capturing Mrna Via The Shine- Dalgarno Interaction Length = 227 Back     alignment and structure
>pdb|3FIC|B Chain B, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A 6.4 A Cryo-Em Map. This File Contains The 30s Subunit And The Ligands Length = 235 Back     alignment and structure
>pdb|1PNS|B Chain B, Crystal Structure Of A Streptomycin Dependent Ribosome From E. Coli, 30s Subunit Of 70s Ribosome. This File, 1pns, Contains The 30s Subunit, Two Trnas, And One Mrna Molecule. The 50s Ribosomal Subunit Is In File 1pnu. Length = 234 Back     alignment and structure
>pdb|1X18|E Chain E, Contact Sites Of Era Gtpase On The Thermus Thermophilus 30s Subunit Length = 231 Back     alignment and structure
>pdb|1VS5|B Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. Length = 241 Back     alignment and structure
>pdb|1P87|B Chain B, Real Space Refined Coordinates Of The 30s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Initiation-Like State Of E. Coli 70s Ribosome Length = 240 Back     alignment and structure
>pdb|2GY9|B Chain B, Structure Of The 30s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 236 Back     alignment and structure
>pdb|3FIH|B Chain B, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry Consists Of The 30s Subunit, Trnas And The Ternary Complex. Length = 218 Back     alignment and structure
>pdb|2OEF|A Chain A, Open And Closed Structures Of The Udp-Glucose Pyrophosphorylase From Leishmania Major Length = 505 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query641
2icy_A469 Probable UTP-glucose-1-phosphate uridylyltransfera 1e-112
3r3i_A528 UTP--glucose-1-phosphate uridylyltransferase; ross 1e-101
2i5k_A488 UTP--glucose-1-phosphate uridylyltransferase; LEFT 1e-100
3gue_A484 UTP-glucose-1-phosphate uridylyltransferase 2; pho 2e-91
2oeg_A505 UTP-glucose-1-phosphate uridylyltransferase 2, put 2e-90
1jv1_A505 Glcnac1P uridyltransferase isoform 1: AGX1; nucleo 5e-43
3oc9_A405 UDP-N-acetylglucosamine pyrophosphorylase; structu 2e-41
3ogz_A630 UDP-sugar pyrophosphorylase; LEFT handed beta heli 7e-36
2yqc_A486 UDP-N-acetylglucosamine pyrophosphorylase; uridine 1e-29
3iz6_A305 40S ribosomal protein SA (S2P); eukaryotic ribosom 1e-26
2zkq_b295 40S ribosomal protein SA; protein-RNA complex, 40S 5e-26
3u5c_A252 40S ribosomal protein S0-A; translation, ribosome, 6e-25
1vi6_A208 30S ribosomal protein S2P; structural genomics, ri 3e-24
3bch_A253 40S ribosomal protein SA; laminin receptor, P40 ri 4e-22
2xzm_B241 RPS0E; ribosome, translation; 3.93A {Tetrahymena t 9e-22
3bbn_B231 Ribosomal protein S2; small ribosomal subunit, spi 2e-20
3r8n_B218 30S ribosomal protein S2; protein biosynthesis, RN 4e-19
2vqe_B256 30S ribosomal protein S2; tRNA-binding, rRNA-bindi 6e-19
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
>3r3i_A UTP--glucose-1-phosphate uridylyltransferase; rossmann fold, beta barrel, nucleotidyltransferase; 3.57A {Homo sapiens} PDB: 3r2w_A Length = 528 Back     alignment and structure
>2i5k_A UTP--glucose-1-phosphate uridylyltransferase; LEFT-handed beta-helix, SGC domain; 3.10A {Saccharomyces cerevisiae} Length = 488 Back     alignment and structure
>3gue_A UTP-glucose-1-phosphate uridylyltransferase 2; phosphatase, UDP, structural GE structural genomics consortium, SGC; HET: UPG PG4; 1.92A {Trypanosoma brucei} Length = 484 Back     alignment and structure
>2oeg_A UTP-glucose-1-phosphate uridylyltransferase 2, putative; rossmann-fold, beta-helix, pyrophosphorylase; HET: UPG; 2.30A {Leishmania major} PDB: 2oef_A* Length = 505 Back     alignment and structure
>1jv1_A Glcnac1P uridyltransferase isoform 1: AGX1; nucleotidyltransferase, alternative splicing; HET: UD1; 1.90A {Homo sapiens} SCOP: c.68.1.5 PDB: 1jv3_A* 1jvg_A* 1jvd_A* 1vm8_A* Length = 505 Back     alignment and structure
>3oc9_A UDP-N-acetylglucosamine pyrophosphorylase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.80A {Entamoeba histolytica} Length = 405 Back     alignment and structure
>3ogz_A UDP-sugar pyrophosphorylase; LEFT handed beta helix, rossmann fold, UDP sugar pyrophospho transferase; 2.03A {Leishmania major} PDB: 3oh3_A* 3oh1_A* 3oh0_A* 3oh2_A* 3oh4_A* Length = 630 Back     alignment and structure
>2yqc_A UDP-N-acetylglucosamine pyrophosphorylase; uridine-diphospho-N- acetylglucosamine, N-acetylglucosamine-1-phosphate, transferase; 1.90A {Candida albicans} PDB: 2yqh_A* 2yqj_A* 2yqs_A* Length = 486 Back     alignment and structure
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 305 Back     alignment and structure
>2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 295 Back     alignment and structure
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B Length = 252 Back     alignment and structure
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A Length = 208 Back     alignment and structure
>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens} Length = 253 Back     alignment and structure
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_B Length = 241 Back     alignment and structure
>3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Length = 231 Back     alignment and structure
>2vqe_B 30S ribosomal protein S2; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.23.15.1 PDB: 1gix_E* 1hnw_B* 1hnx_B* 1hnz_B* 1hr0_B 1ibk_B* 1ibl_B* 1ibm_B 1j5e_B 1jgo_E* 1jgp_E* 1jgq_E* 1ml5_E* 1n32_B* 1n33_B* 1n34_B 1n36_B 1xmo_B* 1xmq_B* 1xnq_B* ... Length = 256 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 641
d2icya2378 c.68.1.5 (A:6-383) UDP-glucose pyrophosphorylase 2 4e-79
d1jv1a_501 c.68.1.5 (A:) UDP-N-acetylglucosamine pyrophosphor 3e-46
d2icya183 b.81.1.4 (A:384-466) UDP-glucose pyrophosphorylase 4e-35
d2uubb1234 c.23.15.1 (B:7-240) Ribosomal protein S2 {Thermus 3e-29
d2gy9b1218 c.23.15.1 (B:8-225) Ribosomal protein S2 {Escheric 4e-27
d1vi6a_193 c.23.15.1 (A:) Ribosomal protein S2 {Archaeon Arch 5e-27
>d2icya2 c.68.1.5 (A:6-383) UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 378 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: UDP-glucose pyrophosphorylase 2 (UDPGP 2)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  254 bits (649), Expect = 4e-79
 Identities = 166/337 (49%), Positives = 228/337 (67%), Gaps = 13/337 (3%)

Query: 231 EIDSKDEILVVPYESLASISEDIAETKMLLDKLVVVKFNGALGTNMGFSGPKSAIEVKNN 290
           +I +  + +VVPYE +  +S+D+AETK LLDKLVV+K NG LGT MG +GPKS IEV++ 
Sbjct: 43  KIQTPTDEIVVPYEKMTPVSQDVAETKNLLDKLVVLKLNGGLGTTMGCTGPKSVIEVRDG 102

Query: 291 LTPLDLMVDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLEKYSNSKVDIHSLSLSQQP- 349
           LT LDL+V Q+E+LN+KYGC VPL+LMN+  THD   K++EKY+NS VDIH+ + S+ P 
Sbjct: 103 LTFLDLIVIQIENLNNKYGCKVPLVLMNSFNTHDDTHKIVEKYTNSNVDIHTFNQSKYPR 162

Query: 350 ------HEKSFEGHSRKDKLYPSSDHSVVFLSLMKSGTLDLLLVQGKEYALVVDSDNVAA 403
                      +G + K+  YP   H  VF +LM SG LD  L QGKEY  V +SDN+ A
Sbjct: 163 VVADEFVPWPSKGKTDKEGWYP-PGHGDVFPALMNSGKLDTFLSQGKEYVFVANSDNLGA 221

Query: 404 VADPKIFNHLIQNQIEYCMEVAPVPSIDLRNSLINLRPGKFQLVDITQNPT-----KQSG 458
           + D  I  HLIQN+ EYCMEV P    D++   +    GK QL++I Q P       +S 
Sbjct: 222 IVDLTILKHLIQNKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSI 281

Query: 459 GKFKFINTRSMWVNLRAIKRLIDTDELKVENFSSSKEVNDDQIISRGTAADSAIQFFDHT 518
            KFK  NT ++WVNL+AIK+L++ D LK+E   + KEV+  +++   TAA +AI+FFD+ 
Sbjct: 282 EKFKIFNTNNLWVNLKAIKKLVEADALKMEIIPNPKEVDGVKVLQLETAAGAAIRFFDNA 341

Query: 519 IGINVAQSRYLPVNSTSDLLLLQSDLYTADEGILVQN 555
           IG+NV +SR+LPV ++SDLLL+QSDLYT  +G + +N
Sbjct: 342 IGVNVPRSRFLPVKASSDLLLVQSDLYTLVDGFVTRN 378
>d1jv1a_ c.68.1.5 (A:) UDP-N-acetylglucosamine pyrophosphorylase {Human (Homo sapiens), AGX1 [TaxId: 9606]} Length = 501 Back     information, alignment and structure
>d2icya1 b.81.1.4 (A:384-466) UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 83 Back     information, alignment and structure
>d2uubb1 c.23.15.1 (B:7-240) Ribosomal protein S2 {Thermus thermophilus [TaxId: 274]} Length = 234 Back     information, alignment and structure
>d2gy9b1 c.23.15.1 (B:8-225) Ribosomal protein S2 {Escherichia coli [TaxId: 562]} Length = 218 Back     information, alignment and structure
>d1vi6a_ c.23.15.1 (A:) Ribosomal protein S2 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 193 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query641
d2icya2378 UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale c 100.0
d1jv1a_501 UDP-N-acetylglucosamine pyrophosphorylase {Human ( 100.0
d2uubb1234 Ribosomal protein S2 {Thermus thermophilus [TaxId: 100.0
d1vi6a_193 Ribosomal protein S2 {Archaeon Archaeoglobus fulgi 100.0
d2gy9b1218 Ribosomal protein S2 {Escherichia coli [TaxId: 562 100.0
d2icya183 UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale c 99.94
d1yp2a2307 Glucose-1-phosphate adenylyltransferase small subu 98.71
d1lvwa_295 RmlA (RfbA) {Archaeon Methanobacterium thermoautot 98.61
d1fxoa_292 RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]} 98.56
d1mc3a_291 RffH {Escherichia coli [TaxId: 562]} 98.44
d2cu2a2268 Putative mannose-1-phosphate guanylyl transferase 98.43
d2oi6a2248 N-acetylglucosamine 1-phosphate uridyltransferase 98.36
d1g97a2250 N-acetylglucosamine 1-phosphate uridyltransferase 98.32
d1tzfa_259 Glucose-1-phosphate cytidylyltransferase RfbF {Sal 97.95
d1w77a1226 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) 97.91
d1i52a_225 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) 97.69
d1vpaa_221 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) 97.62
d1vgwa_226 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) 97.47
d1w55a1205 IspD/IspF bifunctional enzyme, CDP-me synthase dom 97.42
d1jyka_229 CTP:phosphocholine cytidylytransferase LicC {Strep 97.36
d1e5ka_188 Molybdenum cofactor biosynthesis protein MobA {Esc 97.28
d2dpwa1231 Uncharacterized protein TTHA0179 {Thermus thermoph 96.52
d1x94a_191 Phosphoheptose isomerase GmhA1 {Vibrio cholerae [T 92.94
d1tk9a_188 Phosphoheptose isomerase GmhA1 {Campylobacter jeju 91.4
d1x92a_194 Phosphoheptose isomerase GmhA1 {Pseudomonas aerugi 85.78
>d2icya2 c.68.1.5 (A:6-383) UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: UDP-glucose pyrophosphorylase 2 (UDPGP 2)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=0  Score=709.41  Aligned_cols=324  Identities=51%  Similarity=0.837  Sum_probs=307.9

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf             24678887510277867874008989964076899998389878789989971145389997378988999999856199
Q 006541          231 EIDSKDEILVVPYESLASISEDIAETKMLLDKLVVVKFNGALGTNMGFSGPKSAIEVKNNLTPLDLMVDQVESLNSKYGC  310 (641)
Q Consensus       231 ~i~~~~~~~~~~y~~l~~~~~~~~~~~~~l~k~avv~LaGGlGTrlG~~~pK~~l~v~~~~tfldl~~~qi~~l~~~~g~  310 (641)
                      .|.+.+++.+++|++++....+.+++..+++|+|||+||||||||||+++|||++||++++||||++++||++++++||+
T Consensus        43 ~i~~~~~~~~~~~~~l~~~~~~~~~~~~~l~kvavv~LaGG~GTRLG~~~pK~~~~v~~~~t~ldl~~~~i~~l~~~~~~  122 (378)
T d2icya2          43 KIQTPTDEIVVPYEKMTPVSQDVAETKNLLDKLVVLKLNGGLGTTMGCTGPKSVIEVRDGLTFLDLIVIQIENLNNKYGC  122 (378)
T ss_dssp             GCBCCCTTTEEEGGGSCCCCSCHHHHHHHHTTEEEEEEECCBSGGGTCCSBGGGSEEETTEEHHHHHHHHHHHHHHHHSC
T ss_pred             HCCCCCHHHCCCHHHCCCCCCCCHHHHHHHCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCC
T ss_conf             77789856347755536321131367887478899995688635468999826047089988999999999999998499


Q ss_pred             CCCEEEECCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCC-------CCCCCCCCCCCCCHHHHHHHHHHCCHHH
Q ss_conf             874898068532488999999739999528998449844102679-------9988761157889213789997239069
Q 006541          311 NVPLLLMNTAETHDRVQKVLEKYSNSKVDIHSLSLSQQPHEKSFE-------GHSRKDKLYPSSDHSVVFLSLMKSGTLD  383 (641)
Q Consensus       311 ~iPl~iMtS~~T~~~T~~~l~~~~~fg~~i~~f~Q~~~P~l~~~~-------~~~~~~~~~P~GhG~di~~aL~~sG~Ld  383 (641)
                      .|||+||||+.||++|++||++|++||++|++|+|+++||++..+       .+.+.++|+||||| |+|.||++||+|+
T Consensus       123 ~iP~~iMtS~~T~~~t~~~l~~~~~fg~~i~~f~Q~~~P~~~~~~~~~~~~~~~~~~~~~~P~GhG-di~~aL~~sG~Ld  201 (378)
T d2icya2         123 KVPLVLMNSFNTHDDTHKIVEKYTNSNVDIHTFNQSKYPRVVADEFVPWPSKGKTDKEGWYPPGHG-DVFPALMNSGKLD  201 (378)
T ss_dssp             CCCEEEEECTTTHHHHHHHHGGGTTSSSCEEEEECCCEECEETTTTEEGGGGTCCSGGGEECCCGG-GHHHHHHHHSHHH
T ss_pred             CCCEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCH-HHHHHHHHCCHHH
T ss_conf             987899778787689999999826678744899726545554776430124457873116238970-3018877558499


Q ss_pred             HHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEEEECCEEEEEEECCCCCCCCCC----
Q ss_conf             9987493699997276456443978888876529846899700688897431899539958999831899643278----
Q 006541          384 LLLVQGKEYALVVDSDNVAAVADPKIFNHLIQNQIEYCMEVAPVPSIDLRNSLINLRPGKFQLVDITQNPTKQSGG----  459 (641)
Q Consensus       384 ~l~~~G~eyi~v~nvDNL~~~~Dp~~lg~~~~~~~~~~~evv~k~~~d~kgG~l~~~~g~~~lvEy~q~~~~~~~~----  459 (641)
                      +|+++|+||+||+|+|||+|++||.|||||++++++++||||+|+.+|+|||++|+++|+++++||+|+|++++++    
T Consensus       202 ~l~~~Gieyi~v~~vDNl~a~~Dp~~lG~~~~~~~~~~~kvv~Kt~~dek~G~l~~~dg~~~vvEyse~p~e~~~~~~~~  281 (378)
T d2icya2         202 TFLSQGKEYVFVANSDNLGAIVDLTILKHLIQNKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSI  281 (378)
T ss_dssp             HHHTTTCCEEEEEETTBTTCCCCHHHHHHHHHHTCSEEEEEEECCTTCCSSCEEEEETTEEEEECGGGSCGGGHHHHHSS
T ss_pred             HHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEEEECCCEEEEEHHCCCHHHHHHHCCC
T ss_conf             99865987999982677533466488799986597512588762789871349998899002433000786677652477


Q ss_pred             -CCCEEEEECEEEEHHHHHHHHHCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHH
Q ss_conf             -8853656301063999999863078763203201013898950356764267312887257998146312356883145
Q 006541          460 -KFKFINTRSMWVNLRAIKRLIDTDELKVENFSSSKEVNDDQIISRGTAADSAIQFFDHTIGINVAQSRYLPVNSTSDLL  538 (641)
Q Consensus       460 -~~~~fNtnni~~~l~~l~~~~~~~~~~lp~~~n~K~v~~~~~~qlE~~i~d~i~~~~~~~~i~V~R~rF~PvKn~~dll  538 (641)
                       +|++|||||+|++++||+++++...+.+|+|+|+|++++++++|||+||||+|++|+++.+++|||+||+||||++|||
T Consensus       282 ~~~~~~N~nn~~~~l~~l~~~~~~~~~~l~~~~~~K~~~~~~~iqlE~~i~d~~~~~~~~~~~eV~R~rF~PvKn~sDll  361 (378)
T d2icya2         282 EKFKIFNTNNLWVNLKAIKKLVEADALKMEIIPNPKEVDGVKVLQLETAAGAAIRFFDNAIGVNVPRSRFLPVKASSDLL  361 (378)
T ss_dssp             SSCCEEEEEEEEEEHHHHHHHHHTTCCCCCCBCCEEEETTEEEECCBCCGGGGGGGSTTCEEEECCGGGCCBCCSHHHHH
T ss_pred             CCCCEEEEEEEEEEHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHH
T ss_conf             67431162104541999999986245788569657678998743136598789986787579996632007778738989


Q ss_pred             HHHHHHCCCCCCCEEEC
Q ss_conf             65210001246714427
Q 006541          539 LLQSDLYTADEGILVQN  555 (641)
Q Consensus       539 ~~~sd~y~~~~~~l~~~  555 (641)
                      ++|||+|.+++|.+++|
T Consensus       362 ~~~sd~y~~~~~~~~~n  378 (378)
T d2icya2         362 LVQSDLYTLVDGFVTRN  378 (378)
T ss_dssp             HHHSTTEEEETTEEEEC
T ss_pred             HHHHCEEEECCCEEECC
T ss_conf             88622177339888439
>d1jv1a_ c.68.1.5 (A:) UDP-N-acetylglucosamine pyrophosphorylase {Human (Homo sapiens), AGX1 [TaxId: 9606]} Back     information, alignment and structure
>d2uubb1 c.23.15.1 (B:7-240) Ribosomal protein S2 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1vi6a_ c.23.15.1 (A:) Ribosomal protein S2 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2gy9b1 c.23.15.1 (B:8-225) Ribosomal protein S2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2icya1 b.81.1.4 (A:384-466) UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1yp2a2 c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain {Potato (Solanum tuberosum) [TaxId: 4113]} Back     information, alignment and structure
>d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2cu2a2 c.68.1.20 (A:1-268) Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2oi6a2 c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1g97a2 c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1tzfa_ c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransferase RfbF {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1w77a1 c.68.1.13 (A:75-300) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} Back     information, alignment and structure
>d1i52a_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vpaa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1vgwa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Neisseria gonorrhoeae [TaxId: 485]} Back     information, alignment and structure
>d1w55a1 c.68.1.13 (A:3-207) IspD/IspF bifunctional enzyme, CDP-me synthase domain {Campylobacter jejuni [TaxId: 197]} Back     information, alignment and structure
>d1jyka_ c.68.1.13 (A:) CTP:phosphocholine cytidylytransferase LicC {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1e5ka_ c.68.1.8 (A:) Molybdenum cofactor biosynthesis protein MobA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2dpwa1 c.68.1.19 (A:1-231) Uncharacterized protein TTHA0179 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1x94a_ c.80.1.3 (A:) Phosphoheptose isomerase GmhA1 {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1tk9a_ c.80.1.3 (A:) Phosphoheptose isomerase GmhA1 {Campylobacter jejuni [TaxId: 197]} Back     information, alignment and structure
>d1x92a_ c.80.1.3 (A:) Phosphoheptose isomerase GmhA1 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure