Citrus Sinensis ID: 006556

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640
MVIDGAGGKGTWGKLLDTDVESHIDRNDPNYDSGEEPYQLVGATISDPLDDYKKAVASIIEEYFSTGDVEVAASDLRELGSSEYHPYFIKRLVSMAMDRHDKEKEMASVLLSALYADVISPDQIRDGFVILLESADDLAVDILDAVDILALFVARAVVDDILPPAFLTRAKKTLPAASKGFQVIQTAEKSYLSAPHHAELVERRWGGSTHITVEEVKKKIADLLREYVESGDAFEACRCIRELGVSFFHHEVVKRALVLAMEIRTAEPLILKLLKEAAEEGLISSSQMAKGFARLEESLDDLALDIPSARNLFQSIVPVAISEGWLDASFMKSLGEDGRVQQEDEKVKRYKEEVVTIIHEYFLSDDIPELIRSLEDLGAPEFNPIFLKKVITLAMDRKNREKEMASVLLSALHIEIFSTEDIVNGFVMLLESAEDTALDILDASNELALFLARAVIDDVLAPLNLEEISSKLPPNCSGSETVRVARSLIAARHAGERLLRCWGGGTGWAVEDAKDKIMKLLEEYESGGVVSEACQCIRDLGMPFFNHEVVKKALVMAMEKKNDRMLDLLQECFSEGLITTNQMTKGFTRIKDGLDDLALDIPNAKEKFTFYVEYARKKGWLLPAFGSCVADASPLPAVAT
ccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcHHHHHccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccccHHHHHHHHHHHHcccccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHcccccHHHHHHHHHHHHHHcccccHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcHHHHHccHHHHHHHHHHHHHHHHHcccccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHHcccccccccc
ccccccccccccccEEccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccHHccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHccccccHHHHHHHHHHHHHccccccHHHHccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccHcccccccHHHHHHHHHHHHHHcccccHHHHHHccHccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHcccccccHHHHHHHHHHHHHHccccHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccHHHHHccccccccccccc
mvidgaggkgtwgklldtdveshidrndpnydsgeepyqlvgatisdplDDYKKAVASIIEEYFSTGDVEVAASDLrelgsseyhpYFIKRLVSMAMDRHDKEKEMASVLLSALYadvispdqiRDGFVILLESADDLAVDILDAVDILALFVARAvvddilppaflTRAKktlpaaskgfQVIQTAEKSylsaphhaelverrwggsthiTVEEVKKKIADLLREYVESGDAFEACRCIRELGVSFFHHEVVKRALVLAMEIRTAEPLILKLLKEAAEEGLISSSQMAKGFARLEESLDDLALDIPSARNLFQSIVPVAISEGWLDASFMKSlgedgrvqqedeKVKRYKEEVVTIIHEYFLSDDIPELIRSLedlgapefnpIFLKKVITLAMDRKNREKEMASVLLSALHIEIFSTEDIVNGFVMLLESAEDTALDILDASNELALFLARAVIDdvlaplnleeissklppncsgseTVRVARSLIAARHAGERLLRcwgggtgwavEDAKDKIMKLLEEYesggvvseACQCIRdlgmpffnHEVVKKALVMAMEKKNDRMLDLLQECFSeglittnqmtKGFTRIKDglddlaldipnakEKFTFYVEYARKKgwllpafgscvadasplpavat
mvidgaggkgtwgkllDTDVESHIDRNdpnydsgeepYQLVGATISDPLDDYKKAVASIIEEYFSTGDVEVAASDLrelgsseyhPYFIKRLVSMAMDRHDKEKEMASVLLSALYADVISPDQIRDGFVILLESADDLAVDILDAVDILALFVARAVVDDILPPAFLTRAKktlpaaskgfQVIQTAEKSYLSAPHHAELverrwggsthitVEEVKKKIADLLREYVESGDAFEACRCIRELGVSFFHHEVVKRALVLAMEIRTAEPLILKLLKEAAEEGLISSSQMAKGFARLEESLDDLALDIPSARNLFQSIVPVAISEGWLDASFMKSLGedgrvqqedekvkryKEEVVTIIHEYFLSDDIPELIRSLEdlgapefnpIFLKKVITLAMDRKNREKEMASVLLSALHIEIFSTEDIVNGFVMLLESAEDTALDILDASNELALFLARAVIDDVLAPLNLeeissklppncsgsETVRVARSLIAARHAGErllrcwgggtgWAVEDAKDKIMKLLEEYESGGVVSEACQCIRDLGMPFFNHEVVKKALVMAMEKKNDRMLDLLQECFSEGlittnqmtkGFTRIKDGLDDLALDIPNAKEKFTFYVEYARKKGWLLPAFGScvadasplpavat
MVIDGAGGKGTWGKLLDTDVESHIDRNDPNYDSGEEPYQLVGATISDPLDDYKKAVASIIEEYFSTGDVEVAASDLRELGSSEYHPYFIKRLVSMAMDRHDKEKEMASVLLSALYADVISPDQIRDGFVILLESaddlavdildavdilalFVARAVVDDILPPAFLTRAKKTLPAASKGFQVIQTAEKSYLSAPHHAELVERRWGGSTHITVEEVKKKIADLLREYVESGDAFEACRCIRELGVSFFHHEVVKRALVLAMEIRTAEPlilkllkeaaeegliSSSQMAKGFARLEESLDDLALDIPSARNLFQSIVPVAISEGWLDASFMKSLGEDGRVQQEDEKVKRYKEEVVTIIHEYFLSDDIPELIRSLEDLGAPEFNPIFLKKVITLAMDRKNREKEMASVLLSALHIEIFSTEDIVNGFVMLLESAEDTALDILDASNELALFLARAVIDDVLAPLNLEEISSKLPPNCSGSETVRVARSLIAARHAGERLLRCWGGGTGWAVEDAKDKIMKLLEEYESGGVVSEACQCIRDLGMPFFNHEVVKKALVMAMEKKNDRMLDLLQECFSEGLITTNQMTKGFTRIKDGLDDLALDIPNAKEKFTFYVEYARKKGWLLPAFGSCVADASPLPAVAT
***********WGKLL*********************YQLVGATISDPLDDYKKAVASIIEEYFSTGDVEVAASDLRELGSSEYHPYFIKRLVSMAMDR*****EMASVLLSALYADVISPDQIRDGFVILLESADDLAVDILDAVDILALFVARAVVDDILPPAFLTRAKKTLPAASKGFQVIQTAEKSYLSAPHHAELVERRWGGSTHITVEEVKKKIADLLREYVESGDAFEACRCIRELGVSFFHHEVVKRALVLAMEIRTAEPLILKLLKEAAEEGLI*******GFARLEESLDDLALDIPSARNLFQSIVPVAISEGWLDASFMKSL************VKRYKEEVVTIIHEYFLSDDIPELIRSLEDLGAPEFNPIFLKKVITLAMDRKNREKEMASVLLSALHIEIFSTEDIVNGFVMLLESAEDTALDILDASNELALFLARAVIDDVLAPLNLEEIS*********SETVRVARSLIAARHAGERLLRCWGGGTGWAVEDAKDKIMKLLEEYESGGVVSEACQCIRDLGMPFFNHEVVKKALVMAMEKKNDRMLDLLQECFSEGLITTNQMTKGFTRIKDGLDDLALDIPNAKEKFTFYVEYARKKGWLLPAFGSCVAD*********
******G**GTW**************************************DYKKAVASIIEEYFSTGDVEVAASDLRELGSSEYHPYFIKRLVSMAMDRHDKEKEMASVLLSALYADVISPDQIRDGFVILLESADDLAVDILDAVDILALFVARAVVDDILPPAFLTRAKKTLPAASKGFQVIQTAEKSYLSA*HHAELVERRWGGSTHITVEEVKKKIADLLREYVESGDAFEACRCIRELGVSFFHHEVVKRALVLAMEIRTA**LILKLLKEAAEEGLISSSQMAKGFARLEESLDDLALDIPSARNLFQSIVPVAISEGWLDASFMKSL**D**************EEVVTIIHEYFLSDDIPELIRSLEDLGAPEFNPIFLKKVITLAMDRKNREKEMASVLLSALHIEIFSTEDIVNGFVMLLESAEDTALDILDASNELALFLARAVIDDVLAPLNLEEISSKL**NCSGSETVRVARSLIAARHAGERLLRCWGG*TGWAVEDAKDKIMKLLEEYESGGVVSEACQCIRDLGMPFFNHEVVKKALVMAMEKKNDRMLDLLQECFSEGLITTNQMTKGFTRIKDGLDDLALDIPNAKEKFTFYVEYARKKGWLLPAFG**************
MVIDGAGGKGTWGKLLDTDVESHIDRNDPNYDSGEEPYQLVGATISDPLDDYKKAVASIIEEYFSTGDVEVAASDLRELGSSEYHPYFIKRLVSMAMDRHDKEKEMASVLLSALYADVISPDQIRDGFVILLESADDLAVDILDAVDILALFVARAVVDDILPPAFLTRAKKTLPAASKGFQVIQTAEKSYLSAPHHAELVERRWGGSTHITVEEVKKKIADLLREYVESGDAFEACRCIRELGVSFFHHEVVKRALVLAMEIRTAEPLILKLLKEAAEEGLISSSQMAKGFARLEESLDDLALDIPSARNLFQSIVPVAISEGWLDASFMKSLGEDGRVQQEDEKVKRYKEEVVTIIHEYFLSDDIPELIRSLEDLGAPEFNPIFLKKVITLAMDRKNREKEMASVLLSALHIEIFSTEDIVNGFVMLLESAEDTALDILDASNELALFLARAVIDDVLAPLNLEEISSKLPPNCSGSETVRVARSLIAARHAGERLLRCWGGGTGWAVEDAKDKIMKLLEEYESGGVVSEACQCIRDLGMPFFNHEVVKKALVMAMEKKNDRMLDLLQECFSEGLITTNQMTKGFTRIKDGLDDLALDIPNAKEKFTFYVEYARKKGWLLPAFGSCVADASPLPAVAT
*************K*LD***ESHIDRNDPNYDSGEEPYQLVGATISDPLDDYKKAVASIIEEYFSTGDVEVAASDLRELGSSEYHPYFIKRLVSMAMDRHDKEKEMASVLLSALYADVISPDQIRDGFVILLESADDLAVDILDAVDILALFVARAVVDDILPPAFLTRAKKTLPAASKGFQVIQTAEKSYLSAPHHAELVERRWGGSTHITVEEVKKKIADLLREYVESGDAFEACRCIRELGVSFFHHEVVKRALVLAMEIRTAEPLILKLLKEAAEEGLISSSQMAKGFARLEESLDDLALDIPSARNLFQSIVPVAISEGWLDASFMKSLGEDGRVQQEDEKVKRYKEEVVTIIHEYFLSDDIPELIRSLEDLGAPEFNPIFLKKVITLAMDRKNREKEMASVLLSALHIEIFSTEDIVNGFVMLLESAEDTALDILDASNELALFLARAVIDDVLAPLNLEEISSKLPPNCSGSETVRVARSLIAARHAGERLLRCWGGGTGWAVEDAKDKIMKLLEEYESGGVVSEACQCIRDLGMPFFNHEVVKKALVMAMEKKNDRMLDLLQECFSEGLITTNQMTKGFTRIKDGLDDLALDIPNAKEKFTFYVEYARKKGWLLPAFG**************
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MVIDGAGGKGTWGKLLDTDVESHIDRNDPNYDSGEEPYQLVGATISDPLDDYKKAVASIIEEYFSTGDVEVAASDLRELGSSEYHPYFIKRLVSMAMDRHDKEKEMASVLLSALYADVISPDQIRDGFVILLESADDLAVDILDAVDILALFVARAVVDDILPPAFLTRAKKTLPAASKGFQVIQTAEKSYLSAPHHAELVERRWGGSTHITVEEVKKKIADLLREYVESGDAFEACRCIRELGVSFFHHEVVKRALVLAMEIRTAEPLILKLLKEAAEEGLISSSQMAKGFARLEESLDDLALDIPSARNLFQSIVPVAISEGWLDASFMKSLGEDGRVQQEDEKVKRYKEEVVTIIHEYFLSDDIPELIRSLEDLGAPEFNPIFLKKVITLAMDRKNREKEMASVLLSALHIEIFSTEDIVNGFVMLLESAEDTALDILDASNELALFLARAVIDDVLAPLNLEEISSKLPPNCSGSETVRVARSLIAARHAGERLLRCWGGGTGWAVEDAKDKIMKLLEEYESGGVVSEACQCIRDLGMPFFNHEVVKKALVMAMEKKNDRMLDLLQECFSEGLITTNQMTKGFTRIKDGLDDLALDIPNAKEKFTFYVEYARKKGWLLPAFGSCVADASPLPAVAT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query640 2.2.26 [Sep-21-2011]
Q61823469 Programmed cell death pro yes no 0.467 0.637 0.335 3e-32
Q98TX3467 Programmed cell death pro yes no 0.478 0.655 0.314 4e-32
Q9JID1469 Programmed cell death pro yes no 0.467 0.637 0.332 5e-32
Q53EL6469 Programmed cell death pro yes no 0.465 0.635 0.334 8e-32
Q5R8S3469 Programmed cell death pro yes no 0.465 0.635 0.331 4e-31
Q93ZT6780 Eukaryotic translation in no no 0.220 0.180 0.306 9e-08
P79398907 Eukaryotic translation in no no 0.173 0.122 0.333 1e-07
Q62448906 Eukaryotic translation in no no 0.170 0.120 0.297 1e-07
Q5R7J9907 Eukaryotic translation in no no 0.173 0.122 0.333 1e-07
P78344907 Eukaryotic translation in no no 0.173 0.122 0.333 1e-07
>sp|Q61823|PDCD4_MOUSE Programmed cell death protein 4 OS=Mus musculus GN=Pdcd4 PE=1 SV=1 Back     alignment and function desciption
 Score =  140 bits (353), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 105/313 (33%), Positives = 158/313 (50%), Gaps = 14/313 (4%)

Query: 19  DVESHIDRNDPNYDSGEEPYQLVGATISDPLDD--YKKAVASIIEEYFSTGDVEVAASDL 76
           DVE  +D  DPNYD  +E    V  T+  PLD+  ++K +  II+EYF  GD    A  L
Sbjct: 132 DVE-EVDVKDPNYDDDQE--NCVYETVVLPLDETAFEKTLTPIIQEYFEHGDTNEVAEML 188

Query: 77  RELGSSEYHPYFIKRLVSMAMDRHDKEKEMASVLLSALYADVISPDQIRDGFVILLESAD 136
           R+L   E         VS+A++     +EM S LLS L   V+S + +   F  LL+   
Sbjct: 189 RDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTNDVEKSFDKLLKDLP 248

Query: 137 DLAVDILDAVDILALFVARAVVDDILPPAFLTRAKKTLPAASKGFQVIQTAEKS--YLSA 194
           +LA+D   A  ++  F+ARAV D IL   ++   K T+       Q     +K+   LS 
Sbjct: 249 ELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDC----VQARAALDKATVLLSM 304

Query: 195 PHHAELVERRWG-GSTHITVEEVKKKIADLLREYVESGDAFEACRCIRELGVSFFHHEVV 253
               +  +  WG G     V  + K+I  LL+EY+ SGD  EA  C++EL V  FHHE+V
Sbjct: 305 SKGGKRKDSVWGSGGGQQPVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELV 364

Query: 254 KRALVLAMEI--RTAEPLILKLLKEAAEEGLISSSQMAKGFARLEESLDDLALDIPSARN 311
             A+V+ +E    +A  +IL LLK   +   I+  QM +G+ R+   + D+ LD+P + +
Sbjct: 365 YEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIYNEIPDINLDVPHSYS 424

Query: 312 LFQSIVPVAISEG 324
           + +  V      G
Sbjct: 425 VLERFVEECFQAG 437
Inhibits translation initiation and cap-dependent translation. May excert its function by hindering the interaction between EIF4A1 and EIF4G. Inhibits the helicase activity of EIF4A. Modulates the activation of JUN kinase. Down-regulates the expression of MAP4K1, thus inhibiting events important in driving invasion, namely, MAPK85 activation and consequent JUN-dependent transcription. May play a role in apoptosis. Tumor suppressor. Inhibits tumor promoter-induced neoplastic transformation. Binds RNA.
Mus musculus (taxid: 10090)
>sp|Q98TX3|PDCD4_CHICK Programmed cell death protein 4 OS=Gallus gallus GN=PDCD4 PE=2 SV=1 Back     alignment and function description
>sp|Q9JID1|PDCD4_RAT Programmed cell death protein 4 OS=Rattus norvegicus GN=Pdcd4 PE=1 SV=2 Back     alignment and function description
>sp|Q53EL6|PDCD4_HUMAN Programmed cell death protein 4 OS=Homo sapiens GN=PDCD4 PE=1 SV=2 Back     alignment and function description
>sp|Q5R8S3|PDCD4_PONAB Programmed cell death protein 4 OS=Pongo abelii GN=PDCD4 PE=2 SV=1 Back     alignment and function description
>sp|Q93ZT6|IF4G1_ARATH Eukaryotic translation initiation factor isoform 4G-1 OS=Arabidopsis thaliana GN=EIF(ISO)4G1 PE=1 SV=1 Back     alignment and function description
>sp|P79398|IF4G2_RABIT Eukaryotic translation initiation factor 4 gamma 2 OS=Oryctolagus cuniculus GN=EIF4G2 PE=2 SV=1 Back     alignment and function description
>sp|Q62448|IF4G2_MOUSE Eukaryotic translation initiation factor 4 gamma 2 OS=Mus musculus GN=Eif4g2 PE=1 SV=2 Back     alignment and function description
>sp|Q5R7J9|IF4G2_PONAB Eukaryotic translation initiation factor 4 gamma 2 OS=Pongo abelii GN=EIF4G2 PE=2 SV=2 Back     alignment and function description
>sp|P78344|IF4G2_HUMAN Eukaryotic translation initiation factor 4 gamma 2 OS=Homo sapiens GN=EIF4G2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query640
224119542717 predicted protein [Populus trichocarpa] 0.984 0.878 0.925 0.0
224133784713 predicted protein [Populus trichocarpa] 0.978 0.877 0.920 0.0
147821420 755 hypothetical protein VITISV_010607 [Viti 0.987 0.837 0.903 0.0
225456800704 PREDICTED: programmed cell death protein 0.984 0.894 0.904 0.0
297733646 789 unnamed protein product [Vitis vinifera] 0.971 0.788 0.911 0.0
255540415710 conserved hypothetical protein [Ricinus 0.967 0.871 0.909 0.0
356508762705 PREDICTED: uncharacterized protein LOC10 0.978 0.887 0.888 0.0
356513846701 PREDICTED: uncharacterized protein LOC10 0.981 0.895 0.887 0.0
449469592711 PREDICTED: uncharacterized protein LOC10 0.995 0.895 0.860 0.0
357477255 790 Eukaryotic translation initiation factor 0.970 0.786 0.866 0.0
>gi|224119542|ref|XP_002318100.1| predicted protein [Populus trichocarpa] gi|222858773|gb|EEE96320.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1192 bits (3085), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 583/630 (92%), Positives = 606/630 (96%)

Query: 4   DGAGGKGTWGKLLDTDVESHIDRNDPNYDSGEEPYQLVGATISDPLDDYKKAVASIIEEY 63
           DGAGGKGTWGKLLDTD ESHIDR+DPNYDSGEEPYQLVGATISDP+DDYKKAV SIIEEY
Sbjct: 81  DGAGGKGTWGKLLDTDGESHIDRSDPNYDSGEEPYQLVGATISDPIDDYKKAVVSIIEEY 140

Query: 64  FSTGDVEVAASDLRELGSSEYHPYFIKRLVSMAMDRHDKEKEMASVLLSALYADVISPDQ 123
           FSTGDVEVAASDLRELGSSEYH YFIKRLVSMAMDRHDKEKEMASVLLSALYADVISP Q
Sbjct: 141 FSTGDVEVAASDLRELGSSEYHLYFIKRLVSMAMDRHDKEKEMASVLLSALYADVISPSQ 200

Query: 124 IRDGFVILLESADDLAVDILDAVDILALFVARAVVDDILPPAFLTRAKKTLPAASKGFQV 183
           IRDGFVILLESADDLAVDILDAVDILALF+ARAVVDDILPPAFLTRAKKTLP +SKGFQV
Sbjct: 201 IRDGFVILLESADDLAVDILDAVDILALFIARAVVDDILPPAFLTRAKKTLPESSKGFQV 260

Query: 184 IQTAEKSYLSAPHHAELVERRWGGSTHITVEEVKKKIADLLREYVESGDAFEACRCIREL 243
           +QTAEKSYLSAPHHAELVER+WGGSTHITVEEVKKKIADLLREYVESGDA EACRCIREL
Sbjct: 261 LQTAEKSYLSAPHHAELVERKWGGSTHITVEEVKKKIADLLREYVESGDAVEACRCIREL 320

Query: 244 GVSFFHHEVVKRALVLAMEIRTAEPLILKLLKEAAEEGLISSSQMAKGFARLEESLDDLA 303
           GVSFFHHEVVKRALVLAMEIRTAEPLILKLLKEA+EEGLISSSQMAKGFARL ESLDDLA
Sbjct: 321 GVSFFHHEVVKRALVLAMEIRTAEPLILKLLKEASEEGLISSSQMAKGFARLTESLDDLA 380

Query: 304 LDIPSARNLFQSIVPVAISEGWLDASFMKSLGEDGRVQQEDEKVKRYKEEVVTIIHEYFL 363
           LDIPSA++LFQS++P AI+EGWLDASFMKS GEDG+VQ E EKVKR+KEEVVTIIHEYFL
Sbjct: 381 LDIPSAKSLFQSLIPKAIAEGWLDASFMKSSGEDGQVQAEYEKVKRFKEEVVTIIHEYFL 440

Query: 364 SDDIPELIRSLEDLGAPEFNPIFLKKVITLAMDRKNREKEMASVLLSALHIEIFSTEDIV 423
           SDDIPELIRSLEDLG PE NPIFLKK+ITLAMDRKNREKEMASVLLSALHIEIFST+DIV
Sbjct: 441 SDDIPELIRSLEDLGMPECNPIFLKKLITLAMDRKNREKEMASVLLSALHIEIFSTDDIV 500

Query: 424 NGFVMLLESAEDTALDILDASNELALFLARAVIDDVLAPLNLEEISSKLPPNCSGSETVR 483
           NGFVMLLESAEDTALDILDASNELALFLARAVIDDVLAPLNLEEI SKLPPNCSGSETVR
Sbjct: 501 NGFVMLLESAEDTALDILDASNELALFLARAVIDDVLAPLNLEEIGSKLPPNCSGSETVR 560

Query: 484 VARSLIAARHAGERLLRCWGGGTGWAVEDAKDKIMKLLEEYESGGVVSEACQCIRDLGMP 543
           +ARSLIAARHAGERLLRCWGGGTGWAVEDAKDKI+KLLEEYESGGVV EACQCIRDLGMP
Sbjct: 561 MARSLIAARHAGERLLRCWGGGTGWAVEDAKDKILKLLEEYESGGVVGEACQCIRDLGMP 620

Query: 544 FFNHEVVKKALVMAMEKKNDRMLDLLQECFSEGLITTNQMTKGFTRIKDGLDDLALDIPN 603
           FFNHEVVKKALVMAMEKKNDRMLDLLQ CF+EGLIT NQMTKGF RIKDG+DDLALDIPN
Sbjct: 621 FFNHEVVKKALVMAMEKKNDRMLDLLQVCFNEGLITINQMTKGFNRIKDGMDDLALDIPN 680

Query: 604 AKEKFTFYVEYARKKGWLLPAFGSCVADAS 633
           A+EKF+FYVEYA+KKGWLL   GS V D S
Sbjct: 681 AEEKFSFYVEYAQKKGWLLAPLGSSVVDGS 710

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224133784|ref|XP_002321660.1| predicted protein [Populus trichocarpa] gi|222868656|gb|EEF05787.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147821420|emb|CAN76898.1| hypothetical protein VITISV_010607 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225456800|ref|XP_002277813.1| PREDICTED: programmed cell death protein 4 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297733646|emb|CBI14893.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255540415|ref|XP_002511272.1| conserved hypothetical protein [Ricinus communis] gi|223550387|gb|EEF51874.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|356508762|ref|XP_003523123.1| PREDICTED: uncharacterized protein LOC100815729 [Glycine max] Back     alignment and taxonomy information
>gi|356513846|ref|XP_003525619.1| PREDICTED: uncharacterized protein LOC100784244 [Glycine max] Back     alignment and taxonomy information
>gi|449469592|ref|XP_004152503.1| PREDICTED: uncharacterized protein LOC101209979 [Cucumis sativus] Back     alignment and taxonomy information
>gi|357477255|ref|XP_003608913.1| Eukaryotic translation initiation factor 4 gamma [Medicago truncatula] gi|355509968|gb|AES91110.1| Eukaryotic translation initiation factor 4 gamma [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query640
TAIR|locus:2126788702 ECIP1 "AT4G24800" [Arabidopsis 0.984 0.897 0.770 8.2e-257
TAIR|locus:2162007702 AT5G63190 "AT5G63190" [Arabido 0.973 0.887 0.748 1.2e-250
TAIR|locus:2101155633 AT3G48390 "AT3G48390" [Arabido 0.942 0.952 0.709 3e-227
TAIR|locus:2199695693 AT1G22730 "AT1G22730" [Arabido 0.956 0.883 0.485 2.8e-146
UNIPROTKB|F1S5L7470 PDCD4 "Uncharacterized protein 0.492 0.670 0.314 6.5e-34
ZFIN|ZDB-GENE-030131-9847470 pdcd4b "programmed cell death 0.517 0.704 0.302 8.7e-33
UNIPROTKB|Q98TX3467 PDCD4 "Programmed cell death p 0.489 0.670 0.317 4.1e-32
UNIPROTKB|F1NIY3467 PDCD4 "Programmed cell death p 0.489 0.670 0.317 5.2e-32
UNIPROTKB|E2R334471 PDCD4 "Uncharacterized protein 0.487 0.662 0.319 1.1e-31
FB|FBgn0030520509 Pdcd4 "Programmed cell death 4 0.521 0.656 0.297 1.4e-31
TAIR|locus:2126788 ECIP1 "AT4G24800" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2472 (875.2 bits), Expect = 8.2e-257, P = 8.2e-257
 Identities = 487/632 (77%), Positives = 535/632 (84%)

Query:     4 DGAGGKGTWGKLLDTDVESHIDRNDPNYDSGEEPYQLVGATISDPLDDYKKAVASIIEEY 63
             DG GGKG WGKL+DTD + HID NDPNYDSGEEP++LVGAT+SDPLDDYKKA ASII EY
Sbjct:    69 DGGGGKGNWGKLIDTDGDYHIDPNDPNYDSGEEPFELVGATLSDPLDDYKKAAASIINEY 128

Query:    64 FSTGDVEVAASDLRELGSSEYHPYFIKRLVSMAMDRHDKEKEMASVLLSALYADVISPDQ 123
             FSTGDV+VAA+DL ELGSSEYHPYFIKRLVS+AMDRHDKEKEMASVLLSALYADVI+P+Q
Sbjct:   129 FSTGDVDVAAADLIELGSSEYHPYFIKRLVSVAMDRHDKEKEMASVLLSALYADVINPNQ 188

Query:   124 IRDGFVILLESXXXXXXXXXXXXXXXXXFVARAVVDDILPPAFLTRAKKTLPAASKGFQV 183
             IRDGFV+LLES                 F+ARAVVDDILPPAFL RA K LP  SKG+QV
Sbjct:   189 IRDGFVLLLESADDFVVDIPDAVNVLALFLARAVVDDILPPAFLPRAAKALPITSKGYQV 248

Query:   184 IQTAEKSYLSAPHHAELVERRWGGSTHITVEEVKKKIADLLREYVESGDAFEACRCIREL 243
             +QTAEKSYLSA HHAELVERRWGG T  TVEEVKKKIAD+L EYVE+G+ +EACRC+REL
Sbjct:   249 VQTAEKSYLSAAHHAELVERRWGGQTRTTVEEVKKKIADILNEYVETGETYEACRCVREL 308

Query:   244 GVSFFHHEVVKRALVLAMEIRTAEPXXXXXXXXXXXXXXXSSSQMAKGFARLEESLDDLA 303
             GVSFFHHEVVKRALV A+E   AE                SSSQM KGF+RL ESLDDLA
Sbjct:   309 GVSFFHHEVVKRALVTALENHAAEAPVLKLLNEAASENLISSSQMVKGFSRLRESLDDLA 368

Query:   304 LDIPSARNLFQSIVPVAISEGWLDASFMKSLGEDGRVQQEDEKVKRYKEEVVTIIHEYFL 363
             LDIPSAR  F  IVP A+S GWLDASF    GE GR Q EDEK+KR+KE++VTIIHEYF 
Sbjct:   369 LDIPSARTKFGLIVPKAVSGGWLDASFGYPSGECGRQQNEDEKLKRFKEDIVTIIHEYFN 428

Query:   364 SDDIPELIRSLEDLGAPEFNPIFLKKVITLAMDRKNREKEMASVLLSALHIEIFSTEDIV 423
             SDDIPELIRSLEDLGAPE+NPIFLKK+ITLA+DRKN EKEMASVLLS+LHIE+F+TED+ 
Sbjct:   429 SDDIPELIRSLEDLGAPEYNPIFLKKLITLALDRKNHEKEMASVLLSSLHIEMFTTEDVA 488

Query:   424 NGFVMLLESAEDTALDILDASNELALFLARAVIDDVLAPLNLEEISSKLPPNCSGSETVR 483
             +GFVMLLESAEDTALDILDASNELALFLARAVIDDVLAP NLEEISSKL PN SG+ETV+
Sbjct:   489 DGFVMLLESAEDTALDILDASNELALFLARAVIDDVLAPFNLEEISSKLRPNSSGTETVK 548

Query:   484 VARSLIAARHAGERLLRCWGGGTGWAVEDAKDKIMKLLEEYESGGVVSEACQCIRDLGMP 543
             +ARSLI ARHAGERLLRCWGGG+GWAVEDAKDKI  LLEEYES G+VSEAC+CI +LGMP
Sbjct:   549 MARSLIFARHAGERLLRCWGGGSGWAVEDAKDKISNLLEEYESSGLVSEACKCIHELGMP 608

Query:   544 FFNHEVVKKALVMAMEKKNDRM-LDLLQECFSEGLITTNQMTKGFTRIKDGLDDLALDIP 602
             FFNHEVVKKALVM MEKK D+M LDLLQE FSEGLITTNQMTKGFTR+KDGL+DLALDIP
Sbjct:   609 FFNHEVVKKALVMGMEKKKDKMMLDLLQESFSEGLITTNQMTKGFTRVKDGLEDLALDIP 668

Query:   603 NAKEKFTFYVEYARKKGWLLPAF-GSCVADAS 633
             NAKEKF  YVEY +K GW+  +F  S   DA+
Sbjct:   669 NAKEKFNDYVEYGKKNGWVSSSFLTSLTEDAN 700
GO:0003674 "molecular_function" evidence=ND
GO:0005737 "cytoplasm" evidence=ISM;IDA
GO:0005829 "cytosol" evidence=IDA
GO:0009651 "response to salt stress" evidence=IMP
GO:0009723 "response to ethylene stimulus" evidence=IMP
GO:0005794 "Golgi apparatus" evidence=IDA
TAIR|locus:2162007 AT5G63190 "AT5G63190" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2101155 AT3G48390 "AT3G48390" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2199695 AT1G22730 "AT1G22730" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1S5L7 PDCD4 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-9847 pdcd4b "programmed cell death 4b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q98TX3 PDCD4 "Programmed cell death protein 4" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NIY3 PDCD4 "Programmed cell death protein 4" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E2R334 PDCD4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
FB|FBgn0030520 Pdcd4 "Programmed cell death 4 ortholog" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00120846
hypothetical protein (717 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query640
pfam02847113 pfam02847, MA3, MA3 domain 1e-37
smart00544113 smart00544, MA3, Domain in DAP-5, eIF4G, MA-3 and 7e-35
pfam02847113 pfam02847, MA3, MA3 domain 1e-34
pfam02847113 pfam02847, MA3, MA3 domain 5e-34
pfam02847113 pfam02847, MA3, MA3 domain 2e-29
smart00544113 smart00544, MA3, Domain in DAP-5, eIF4G, MA-3 and 4e-29
smart00544113 smart00544, MA3, Domain in DAP-5, eIF4G, MA-3 and 4e-29
smart00544113 smart00544, MA3, Domain in DAP-5, eIF4G, MA-3 and 5e-28
>gnl|CDD|111714 pfam02847, MA3, MA3 domain Back     alignment and domain information 
 Score =  135 bits (342), Expect = 1e-37
 Identities = 51/113 (45%), Positives = 64/113 (56%), Gaps = 1/113 (0%)

Query: 52  YKKAVASIIEEYFSTGDVEVAASDLRELGSSEYHPYFIKRLVSMAMDRHDKEKEMASVLL 111
            KK +  I+EEY S+GD + AA  L ELG    H   +K L+  A++     +EM  VLL
Sbjct: 1   LKKKIFLILEEYLSSGDYDEAARCLLELGLPFQHHEVVKVLLVCALEEKKTYREMYGVLL 60

Query: 112 SALY-ADVISPDQIRDGFVILLESADDLAVDILDAVDILALFVARAVVDDILP 163
           S L    +IS  Q   GF  LLES +DL +DI DA   LA FVAR + D ILP
Sbjct: 61  SRLCQFGLISTKQFEKGFSRLLESLEDLELDIPDAWRNLAEFVARLISDGILP 113

Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains. Length = 113
>gnl|CDD|214714 smart00544, MA3, Domain in DAP-5, eIF4G, MA-3 and other proteins Back     alignment and domain information
>gnl|CDD|111714 pfam02847, MA3, MA3 domain Back     alignment and domain information
>gnl|CDD|111714 pfam02847, MA3, MA3 domain Back     alignment and domain information
>gnl|CDD|111714 pfam02847, MA3, MA3 domain Back     alignment and domain information
>gnl|CDD|214714 smart00544, MA3, Domain in DAP-5, eIF4G, MA-3 and other proteins Back     alignment and domain information
>gnl|CDD|214714 smart00544, MA3, Domain in DAP-5, eIF4G, MA-3 and other proteins Back     alignment and domain information
>gnl|CDD|214714 smart00544, MA3, Domain in DAP-5, eIF4G, MA-3 and other proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 640
KOG0403645 consensus Neoplastic transformation suppressor Pdc 100.0
KOG0403645 consensus Neoplastic transformation suppressor Pdc 100.0
PF02847113 MA3: MA3 domain; InterPro: IPR003891 This entry re 99.89
smart00544113 MA3 Domain in DAP-5, eIF4G, MA-3 and other protein 99.89
PF02847113 MA3: MA3 domain; InterPro: IPR003891 This entry re 99.89
smart00544113 MA3 Domain in DAP-5, eIF4G, MA-3 and other protein 99.89
KOG0401970 consensus Translation initiation factor 4F, riboso 99.16
KOG0401970 consensus Translation initiation factor 4F, riboso 99.07
PLN032181060 maturation of RBCL 1; Provisional 97.68
PLN03218 1060 maturation of RBCL 1; Provisional 96.94
PLN03077 857 Protein ECB2; Provisional 96.65
PLN03077 857 Protein ECB2; Provisional 96.31
PLN03081 697 pentatricopeptide (PPR) repeat-containing protein; 95.41
PLN03081697 pentatricopeptide (PPR) repeat-containing protein; 92.39
PF04286367 DUF445: Protein of unknown function (DUF445); Inte 83.05
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=2.7e-150  Score=1176.87  Aligned_cols=617  Identities=73%  Similarity=1.067  Sum_probs=594.3

Q ss_pred             ccCcccccccCcccccCCCCCCCCCCCCCCCCCCCccccccCCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCC
Q 006556            3 IDGAGGKGTWGKLLDTDVESHIDRNDPNYDSGEEPYQLVGATISDPLDDYKKAVASIIEEYFSTGDVEVAASDLRELGSS   82 (640)
Q Consensus         3 ~~G~ggk~~wg~~~~~~~~~~~d~~DPnyds~~~~~~~~~~~~~~s~ee~~k~~~~il~EYf~~~D~~Ea~~~l~eL~~p   82 (640)
                      +-|+|||||||...+       |.||||||+.|++|.++.+++.-..++|+|++.+||+|||++||+.-|+..++||...
T Consensus         7 ~~~~g~~~~wg~~~d-------~d~dp~~dtge~~~~lv~s~~~~pl~dykk~~~sii~eyfstgdv~vaa~dl~elg~s   79 (645)
T KOG0403|consen    7 KKGEGSKGTWGVLDD-------DDNDPNYDTGEEPYHLVGSPVSDPLSDYKKKAVSIIDEYFSTGDVVVAASDLKELGSS   79 (645)
T ss_pred             ccccCCCCccccccC-------CCCCCCCCCCCCcccccCCccCCcHHHHHHHHHHHHHHHccCCCchhhHHHHHHhccc
Confidence            578999999997766       4499999999999999999998899999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhhcchhhHHHHHHHHHHHHHhcCCC
Q 006556           83 EYHPYFIKRLVSMAMDRHDKEKEMASVLLSALYADVISPDQIRDGFVILLESADDLAVDILDAVDILALFVARAVVDDIL  162 (640)
Q Consensus        83 ~~~~~~v~~~i~~aLdr~~~eREl~s~LLs~L~~~~ls~~~i~~Gf~~lL~~l~Dl~lDiP~a~~~la~fiAraV~d~~l  162 (640)
                      +||++||+++|++||||+++|+||+|.|||.||..+++|+|+..||.++|++.+|+.+|||+|...||-||||||+|++|
T Consensus        80 eyhpyfvkrlvsmamdrhdkekemasvlls~lyadvi~p~qir~gf~~ll~s~ddl~vdipdavnvlalfiaraivddil  159 (645)
T KOG0403|consen   80 EYHPYFVKRLVSMAMDRHDKEKEMASVLLSALYADVIDPDQIRDGFIRLLESADDLAVDIPDAVNVLALFIARAIVDDIL  159 (645)
T ss_pred             cccHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHhcccceecCchHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChhhhhhhhhcCCCCchHHHHHHHHHhhcccCCCchhHHhhhhcCCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006556          163 PPAFLTRAKKTLPAASKGFQVIQTAEKSYLSAPHHAELVERRWGGSTHITVEEVKKKIADLLREYVESGDAFEACRCIRE  242 (640)
Q Consensus       163 ~~~~l~~~~~~~~~~~~g~~~l~~a~~~lLs~~~~~~rl~~~Wgg~~~~~~~el~~ki~~lL~EY~~s~D~~EA~~cl~E  242 (640)
                      ||.|+.+.+..+|.+++|.++++.|++++|++||+.+-++..|||.+.++++|+|+||+.+++||..+||..||+||+|+
T Consensus       160 pp~fl~r~~k~lp~~skg~qV~~~aeksylsap~hae~ve~~wGg~~n~t~EEvK~kIn~~l~eyv~~getrea~rciR~  239 (645)
T KOG0403|consen  160 PPAFLKRAKKLLPDSSKGFQVINTAEKSYLSAPHHAELVELFWGGETNATVEEVKNKINGNLIEYVEIGETREACRCIRE  239 (645)
T ss_pred             ChHHHHHHHhhCCCcccchhHHHHHHhhccCCCchhhHHHhhhCCCccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCcchHHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHh
Q 006556          243 LGVSFFHHEVVKRALVLAMEIRTAEPLILKLLKEAAEEGLISSSQMAKGFARLEESLDDLALDIPSARNLFQSIVPVAIS  322 (640)
Q Consensus       243 L~~p~fhhe~V~~ai~~alE~~~~~~~v~~LL~~L~~~~~is~~q~~~Gf~rv~e~ldDi~lDvP~A~~~l~~~v~~~~~  322 (640)
                      |.+|+|||+.|+++++++||....+..+++||+.-...|++|++||.+||.|+.++++|+++|+|.|...++.++.++..
T Consensus       240 L~vsffhhe~vkralv~ame~~~ae~l~l~llke~~e~glissSq~~kGfsr~~~slddl~ldiP~a~~~~esiv~Ka~s  319 (645)
T KOG0403|consen  240 LGVSFFHHEGVKRALVDAMEDALAEGLTLKLLKEGREEGLISSSQMGKGFSRKGGSLDDLVLDIPSARYDFESIVPKAPS  319 (645)
T ss_pred             hCCCchhhHHHHHHHHHHHhhhhcccceeccchhhhhhcchhhhccccCchhhccccccccccCcchhhhhhhhcccCCC
Confidence            99999999999999999999876677899999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCChhhhh-hhccCCcccCcchhHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChhh
Q 006556          323 EGWLDASFMK-SLGEDGRVQQEDEKVKRYKEEVVTIIHEYFLSDDIPELIRSLEDLGAPEFNPIFLKKVITLAMDRKNRE  401 (640)
Q Consensus       323 ~g~l~~~~~~-~~~~~~~~~~~~~~~ee~~k~~~~il~EYf~~~D~~E~~~~l~el~~p~~~~~~v~~~i~~aldr~~~e  401 (640)
                      .||+..+..+ .....|+    ......|+|.+.+||+|||.|||+.|++++|++||.|++++.|++++|++|||||++|
T Consensus       320 ~gwl~e~s~k~~s~~~g~----~e~~r~Fkk~~~~IIqEYFlsgDt~Evi~~L~DLn~~E~~~~f~k~lITLAldrK~~e  395 (645)
T KOG0403|consen  320 GGWLDENSFKETSVLPGD----SENLRAFKKDLTPIIQEYFLSGDTPEVIRSLRDLNLPEYNPGFLKLLITLALDRKNSE  395 (645)
T ss_pred             CCccchhhhcccccCCCc----chHHHHHHHhhHHHHHHHHhcCChHHHHHHHHHcCCccccchHHHHHHHHHhccchhH
Confidence            9999955444 3444443    3448999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhccCChHHHHHHHHHHHhhhhhhhhchhchHHHHHHHHHHHHHhccCCchhhhHhhccCCCCCcHHHH
Q 006556          402 KEMASVLLSALHIEIFSTEDIVNGFVMLLESAEDTALDILDASNELALFLARAVIDDVLAPLNLEEISSKLPPNCSGSET  481 (640)
Q Consensus       402 REl~s~LLs~L~~~~ls~~~i~~gf~~lL~~l~Dl~lDiP~a~~~la~fiARaV~dd~l~~~~l~~~~~~~~~~~~g~~~  481 (640)
                      |||+|+|||+|+.+++|++|+.+||.+||++++|+.+|+|+|++.||.||||||.|++|.|.+|.++.+++|..++|+++
T Consensus       396 kEMasvllS~L~~e~fsteDv~~~F~mLLesaedtALD~p~a~~elalFlARAViDdVLap~~leei~~~lp~~s~g~et  475 (645)
T KOG0403|consen  396 KEMASVLLSDLHGEVFSTEDVEKGFDMLLESAEDTALDIPRASQELALFLARAVIDDVLAPTNLEEISGTLPPVSQGRET  475 (645)
T ss_pred             HHHHHHHHHHhhcccCCHHHHHHHHHHHHhcchhhhccccccHHHHHHHHHHHHhhcccccCcHHHHcCCCCCchhhHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999988999999


Q ss_pred             HHHHHHHHhcccccccccceecCC-CCcchHHHHHHHHHHHHHHHhccCHHHHHHHHHhhCCCCcchHHHHHHHHHHhcc
Q 006556          482 VRVARSLIAARHAGERLLRCWGGG-TGWAVEDAKDKIMKLLEEYESGGVVSEACQCIRDLGMPFFNHEVVKKALVMAMEK  560 (640)
Q Consensus       482 l~~a~~~L~~~h~~~rl~~~Wg~~-~g~~~~~~k~ki~~ll~EY~~s~D~~EA~~cv~eL~~p~fhhelV~~ai~~alE~  560 (640)
                      +++|+++|+++|+++|++||||+| +||+|+++|+||.+||+||.++||+.|||+||+||+|||||||+||+|++|+||+
T Consensus       476 ~~~ArsLlsar~aGeRllr~WGgGG~g~sVed~kdkI~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEk  555 (645)
T KOG0403|consen  476 LDKARSLLSARHAGERLLRVWGGGGGGWSVEDAKDKIDMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEK  555 (645)
T ss_pred             HHHHHHHHHHhhcccchhheecCCCCcchHHHHHHHHHHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHh
Confidence            999999999999999999999988 6899999999999999999999999999999999999999999999999999999


Q ss_pred             Cch--HHHHHHHHHHHcCCCCHHHHHhHHHHHhhccchhhccccchHHHHHHHHHHHHHcC------------CCCCccc
Q 006556          561 KND--RMLDLLQECFSEGLITTNQMTKGFTRIKDGLDDLALDIPNAKEKFTFYVEYARKKG------------WLLPAFG  626 (640)
Q Consensus       561 ~~~--~~~~LL~~l~~~~~vs~~q~~~Gf~rv~~~l~Di~lDvP~A~~~l~~~v~~~~~~g------------~l~~~~~  626 (640)
                      +++  +|++||+.|+++|+||.+||++||.||++.|+||+||||+|++.|++||+.|.++|            |+...|.
T Consensus       556 k~d~t~~ldLLk~cf~sglIT~nQMtkGf~RV~dsl~DlsLDvPna~ekf~~~Ve~~~~~G~i~~~l~~~~~s~l~~~F~  635 (645)
T KOG0403|consen  556 KGDSTMILDLLKECFKSGLITTNQMTKGFERVYDSLPDLSLDVPNAYEKFERYVEECFQNGIISKQLRDLCPSRLRKRFV  635 (645)
T ss_pred             cCcHHHHHHHHHHHHhcCceeHHHhhhhhhhhhccCcccccCCCcHHHHHHHHHHHHHHcCchhHHhhhcchhhhccccc
Confidence            987  89999999999999999999999999999999999999999999999999999999            6666666


Q ss_pred             cCcc
Q 006556          627 SCVA  630 (640)
Q Consensus       627 ~~~~  630 (640)
                      ..+.
T Consensus       636 se~~  639 (645)
T KOG0403|consen  636 SEGD  639 (645)
T ss_pred             cCCC
Confidence            5443

>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms] Back     alignment and domain information
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ] Back     alignment and domain information
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins Back     alignment and domain information
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ] Back     alignment and domain information
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins Back     alignment and domain information
>KOG0401 consensus Translation initiation factor 4F, ribosome/mRNA-bridging subunit (eIF-4G) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0401 consensus Translation initiation factor 4F, ribosome/mRNA-bridging subunit (eIF-4G) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN03218 maturation of RBCL 1; Provisional Back     alignment and domain information
>PLN03218 maturation of RBCL 1; Provisional Back     alignment and domain information
>PLN03077 Protein ECB2; Provisional Back     alignment and domain information
>PLN03077 Protein ECB2; Provisional Back     alignment and domain information
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional Back     alignment and domain information
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional Back     alignment and domain information
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query640
3eij_A321 Crystal Structure Of Pdcd4 Length = 321 1e-28
3eiq_C358 Crystal Structure Of Pdcd4-eif4a Length = 358 1e-28
2zu6_B307 Crystal Structure Of The Eif4a-Pdcd4 Complex Length 3e-26
2hm8_A136 Solution Structure Of The C-Terminal Ma-3 Domain Of 8e-14
2nsz_A129 1.15 Angstrom Crystal Structure Of The Ma3 Domain O 3e-13
2kzt_B131 Structure Of The Tandem Ma-3 Region Of Pdcd4 Length 4e-13
2ggf_A137 Solution Structure Of The Ma3 Domain Of Human Progr 4e-13
2ion_A152 Crystal Structure Of The C-terminal Ma3 Domain Of P 6e-13
2ios_A150 Crystal Structure Of The C-Terminal Ma3 Domain Of P 1e-11
2iol_A150 Crystal Structure Of The C-Terminal Ma3 Domain Of P 2e-11
2kzt_A163 Structure Of The Tandem Ma-3 Region Of Pdcd4 Length 1e-09
2rg8_B165 Crystal Structure Of Programmed For Cell Death 4 Mi 2e-09
3l6a_A364 Crystal Structure Of The C-Terminal Region Of Human 4e-08
>pdb|3EIJ|A Chain A, Crystal Structure Of Pdcd4 Length = 321 Back     alignment and structure 
Iteration: 1

 Score =  124 bits (312), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 87/278 (31%), Positives = 141/278 (50%), Gaps = 8/278 (2%)
Query: 348 KRYKEEVVTIIHEYFLSDDIPELIRSLEDLGAPEFNPIFLKKVITLAMDRKNREKEMASV 407
           + +++ +  II EYF   D  E+   L DL   E         ++LA++ K   +EM S 
Sbjct: 14  RAFEKTLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSK 73
Query: 408 LLSALHIEIFSTEDIVNGFVMLLESAEDTALDILDASNELALFLARAVIDDVLAPLNLEE 467
           LLS L   + ST D+   F  LL+   + ALD   A   +  F+ARAV D +L    ++ 
Sbjct: 74  LLSDLCGTVMSTTDVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYID- 132
Query: 468 ISSKLPPNC-SGSETVRVARSLIAARHAGERLLRCWGGGTG-WAVEDAKDKIMKLLEEYE 525
            S K   +C      +  A  L++    G+R    WG G G  +V     +I  LL+EY 
Sbjct: 133 -SYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQSVNHLVKEIDMLLKEYL 191
Query: 526 SGGVVSEACQCIRDLGMPFFNHEVVKKALVMAMEKKNDR----MLDLLQECFSEGLITTN 581
             G +SEA  C+++L +P F+HE+V +A++M +E   +     +LDLL+  +    IT +
Sbjct: 192 LSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVD 251
Query: 582 QMTKGFTRIKDGLDDLALDIPNAKEKFTFYVEYARKKG 619
           QM +G+ RI + + D+ LD+P++      +VE   + G
Sbjct: 252 QMKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAG 289
>pdb|3EIQ|C Chain C, Crystal Structure Of Pdcd4-eif4a Length = 358 Back     alignment and structure
>pdb|2ZU6|B Chain B, Crystal Structure Of The Eif4a-Pdcd4 Complex Length = 307 Back     alignment and structure
>pdb|2HM8|A Chain A, Solution Structure Of The C-Terminal Ma-3 Domain Of Pdcd4 Length = 136 Back     alignment and structure
>pdb|2NSZ|A Chain A, 1.15 Angstrom Crystal Structure Of The Ma3 Domain Of Pdcd4 Length = 129 Back     alignment and structure
>pdb|2KZT|B Chain B, Structure Of The Tandem Ma-3 Region Of Pdcd4 Length = 131 Back     alignment and structure
>pdb|2GGF|A Chain A, Solution Structure Of The Ma3 Domain Of Human Programmed Cell Death 4 Length = 137 Back     alignment and structure
>pdb|2ION|A Chain A, Crystal Structure Of The C-terminal Ma3 Domain Of Pdcd4 (mouse); Form2 Length = 152 Back     alignment and structure
>pdb|2IOS|A Chain A, Crystal Structure Of The C-Terminal Ma3 Domain Of Pdcd4 (Mouse); Form 3 Length = 150 Back     alignment and structure
>pdb|2IOL|A Chain A, Crystal Structure Of The C-Terminal Ma3 Domain Of Pdcd4 (Mouse); Form 1 Length = 150 Back     alignment and structure
>pdb|2KZT|A Chain A, Structure Of The Tandem Ma-3 Region Of Pdcd4 Length = 163 Back     alignment and structure
>pdb|3L6A|A Chain A, Crystal Structure Of The C-Terminal Region Of Human P97 Length = 364 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query640
3eiq_C358 Programmed cell death protein 4; PDCD4, anti-oncog 1e-106
3eiq_C358 Programmed cell death protein 4; PDCD4, anti-oncog 7e-72
3eiq_C358 Programmed cell death protein 4; PDCD4, anti-oncog 2e-43
3eiq_C 358 Programmed cell death protein 4; PDCD4, anti-oncog 5e-18
2zu6_B307 Programmed cell death protein 4; protein-protein c 3e-90
2zu6_B307 Programmed cell death protein 4; protein-protein c 1e-74
2zu6_B307 Programmed cell death protein 4; protein-protein c 1e-43
2zu6_B307 Programmed cell death protein 4; protein-protein c 2e-22
2rg8_A165 Programmed cell death protein 4; MA3 domain, heat 2e-49
2rg8_A165 Programmed cell death protein 4; MA3 domain, heat 1e-45
2rg8_A165 Programmed cell death protein 4; MA3 domain, heat 5e-25
2rg8_A165 Programmed cell death protein 4; MA3 domain, heat 2e-20
3l6a_A364 Eukaryotic translation initiation factor 4 gamma; 7e-40
3l6a_A364 Eukaryotic translation initiation factor 4 gamma; 3e-25
3l6a_A364 Eukaryotic translation initiation factor 4 gamma; 1e-22
3l6a_A 364 Eukaryotic translation initiation factor 4 gamma; 1e-18
2nsz_A129 Programmed cell death protein 4; PDCD4, tumor supp 6e-36
2nsz_A129 Programmed cell death protein 4; PDCD4, tumor supp 6e-30
2nsz_A129 Programmed cell death protein 4; PDCD4, tumor supp 8e-28
2nsz_A129 Programmed cell death protein 4; PDCD4, tumor supp 5e-21
2ion_A152 PDCD4, programmed cell death 4, PDCD4; alpha-helic 1e-35
2ion_A152 PDCD4, programmed cell death 4, PDCD4; alpha-helic 2e-30
2ion_A152 PDCD4, programmed cell death 4, PDCD4; alpha-helic 6e-28
2ion_A152 PDCD4, programmed cell death 4, PDCD4; alpha-helic 1e-21
1ug3_A339 EIF4GI, eukaryotic protein synthesis initiation fa 1e-30
1ug3_A339 EIF4GI, eukaryotic protein synthesis initiation fa 2e-26
1ug3_A339 EIF4GI, eukaryotic protein synthesis initiation fa 2e-23
1ug3_A 339 EIF4GI, eukaryotic protein synthesis initiation fa 2e-18
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-14
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus} Length = 358 Back     alignment and structure
 Score =  325 bits (835), Expect = e-106
 Identities = 102/339 (30%), Positives = 153/339 (45%), Gaps = 5/339 (1%)

Query: 4   DGAGGKGTWGKLLDTDVESHIDRNDPNYDSGEEPYQLVGATISDPLDDYKKAVASIIEEY 63
               GKG WG          +D  DPNYD  +E        +      ++K +  II+EY
Sbjct: 5   SPEFGKGVWGTPGQVYDVEEVDVKDPNYDDDQENCVYETVVLPLDETAFEKTLTPIIQEY 64

Query: 64  FSTGDVEVAASDLRELGSSEYHPYFIKRLVSMAMDRHDKEKEMASVLLSALYADVISPDQ 123
           F  GD    A  LR+L   E         VS+A++     +EM S LLS L   V+S + 
Sbjct: 65  FEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTND 124

Query: 124 IRDGFVILLESADDLAVDILDAVDILALFVARAVVDDILPPAFLTRAKKTLPAASKGFQV 183
           +   F  LL+   +LA+D   A  ++  F+ARAV D IL   ++   K T+       + 
Sbjct: 125 VEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVD--CVQARA 182

Query: 184 IQTAEKSYLSAPHHAELVERRWG-GSTHITVEEVKKKIADLLREYVESGDAFEACRCIRE 242
                   LS     +  +  WG G     V  + K+I  LL+EY+ SGD  EA  C++E
Sbjct: 183 ALDKATVLLSMSKGGKRKDSVWGSGGGQQPVNHLVKEIDMLLKEYLLSGDISEAEHCLKE 242

Query: 243 LGVSFFHHEVVKRALVLAMEIRT--AEPLILKLLKEAAEEGLISSSQMAKGFARLEESLD 300
           L V  FHHE+V  A+V+ +E     A  +IL LLK   +   I+  QM +G+ R+   + 
Sbjct: 243 LEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIYNEIP 302

Query: 301 DLALDIPSARNLFQSIVPVAISEGWLDASFMKSLGEDGR 339
           D+ LD+P + ++ +  V      G +           GR
Sbjct: 303 DINLDVPHSYSVLERFVEECFQAGIISKQLRDLCPSRGR 341
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus} Length = 358 Back     alignment and structure
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus} Length = 358 Back     alignment and structure
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus} Length = 358 Back     alignment and structure
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A Length = 307 Back     alignment and structure
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A Length = 307 Back     alignment and structure
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A Length = 307 Back     alignment and structure
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A Length = 307 Back     alignment and structure
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A Length = 165 Back     alignment and structure
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A Length = 165 Back     alignment and structure
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens} Length = 364 Back     alignment and structure
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens} Length = 364 Back     alignment and structure
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens} Length = 364 Back     alignment and structure
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens} Length = 364 Back     alignment and structure
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A Length = 129 Back     alignment and structure
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A Length = 129 Back     alignment and structure
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A Length = 129 Back     alignment and structure
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A Length = 129 Back     alignment and structure
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A Length = 152 Back     alignment and structure
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A Length = 152 Back     alignment and structure
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A Length = 152 Back     alignment and structure
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A Length = 152 Back     alignment and structure
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 Length = 339 Back     alignment and structure
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 Length = 339 Back     alignment and structure
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 Length = 339 Back     alignment and structure
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 Length = 339 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query640
3eiq_C358 Programmed cell death protein 4; PDCD4, anti-oncog 100.0
3eiq_C358 Programmed cell death protein 4; PDCD4, anti-oncog 100.0
2zu6_B307 Programmed cell death protein 4; protein-protein c 100.0
2zu6_B307 Programmed cell death protein 4; protein-protein c 100.0
2rg8_A165 Programmed cell death protein 4; MA3 domain, heat 100.0
2rg8_A165 Programmed cell death protein 4; MA3 domain, heat 100.0
2nsz_A129 Programmed cell death protein 4; PDCD4, tumor supp 100.0
2ion_A152 PDCD4, programmed cell death 4, PDCD4; alpha-helic 100.0
2nsz_A129 Programmed cell death protein 4; PDCD4, tumor supp 99.98
2ion_A152 PDCD4, programmed cell death 4, PDCD4; alpha-helic 99.97
3l6a_A364 Eukaryotic translation initiation factor 4 gamma; 99.96
1ug3_A339 EIF4GI, eukaryotic protein synthesis initiation fa 99.94
3l6a_A364 Eukaryotic translation initiation factor 4 gamma; 99.93
1ug3_A339 EIF4GI, eukaryotic protein synthesis initiation fa 99.93
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus} Back     alignment and structure
Probab=100.00  E-value=1.9e-86  Score=708.23  Aligned_cols=337  Identities=30%  Similarity=0.465  Sum_probs=267.6

Q ss_pred             ccCcccccccCcccccCCCCCCCCCCCCCCCCCCCccccccCCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCC
Q 006556            3 IDGAGGKGTWGKLLDTDVESHIDRNDPNYDSGEEPYQLVGATISDPLDDYKKAVASIIEEYFSTGDVEVAASDLRELGSS   82 (640)
Q Consensus         3 ~~G~ggk~~wg~~~~~~~~~~~d~~DPnyds~~~~~~~~~~~~~~s~ee~~k~~~~il~EYf~~~D~~Ea~~~l~eL~~p   82 (640)
                      |.|.|||||||+|++++++..+|+|||||||+++++...+..|++|++||+|++++||+|||+++|++||++|++|||+|
T Consensus         4 ~~~~~gk~~wg~~~~~~~~~~~d~~dpnyd~~~~~~~~~~~~p~ls~ee~~k~~~~ii~EYf~~~d~~Ea~~~l~eL~~p   83 (358)
T 3eiq_C            4 GSPEFGKGVWGTPGQVYDVEEVDVKDPNYDDDQENCVYETVVLPLDETAFEKTLTPIIQEYFEHGDTNEVAEMLRDLNLG   83 (358)
T ss_dssp             ----------------------------------------------CHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTTCC
T ss_pred             CCCCCCCCcCCCCcCcCcccCCCccCCCCCCCCCCceeecCCCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCc
Confidence            68999999999999988778899999999998777766666688999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhhcchhhHHHHHHHHHHHHHhcCCC
Q 006556           83 EYHPYFIKRLVSMAMDRHDKEKEMASVLLSALYADVISPDQIRDGFVILLESADDLAVDILDAVDILALFVARAVVDDIL  162 (640)
Q Consensus        83 ~~~~~~v~~~i~~aLdr~~~eREl~s~LLs~L~~~~ls~~~i~~Gf~~lL~~l~Dl~lDiP~a~~~la~fiAraV~d~~l  162 (640)
                      .|++.||+++|++||||+++||||+|+||++||++++|++||.+||..+|++++|+++|+|+||+|+|.||||||+||++
T Consensus        84 ~~~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~~~~ls~~~i~~gf~~lle~ldDl~lDiP~a~~~la~flaRaV~d~~l  163 (358)
T 3eiq_C           84 EMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTNDVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDGIL  163 (358)
T ss_dssp             GGGGGHHHHHHHHHTTSCHHHHHHHHHHHHTTTTTSCCHHHHHHHHHHHHHTHHHHHHHCTTHHHHHHHHHHHHHHTTCS
T ss_pred             hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhccccccHHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChhhhhhhhhcCCCCchHHHHHHHHHhhcccCCCchhHHhhhhcCCC-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006556          163 PPAFLTRAKKTLPAASKGFQVIQTAEKSYLSAPHHAELVERRWGGST-HITVEEVKKKIADLLREYVESGDAFEACRCIR  241 (640)
Q Consensus       163 ~~~~l~~~~~~~~~~~~g~~~l~~a~~~lLs~~~~~~rl~~~Wgg~~-~~~~~el~~ki~~lL~EY~~s~D~~EA~~cl~  241 (640)
                      ||+||.+..... .++.|+++|++|+ ++|+++|+.+|++|+||+|+ .++++++++|++++|+|||+++|++||++||+
T Consensus       164 ~~~~l~~~~~~~-~~~~~~~~l~~a~-~~L~~~~~~~~~~~~WG~g~~~~~veelkkki~~lL~EY~~s~D~~EA~~ci~  241 (358)
T 3eiq_C          164 CNTYIDSYKGTV-DCVQARAALDKAT-VLLSMSKGGKRKDSVWGSGGGQQPVNHLVKEIDMLLKEYLLSGDISEAEHCLK  241 (358)
T ss_dssp             CSSTTGGGC----CCHHHHHHHHHHH-HHHTC---------CCCCCCSSSCHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             CHHHHHHHhhcc-cchHHHHHHHHHH-HHHhccchHHHHHHhcCCCCCCccHHHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence            999999987554 5678999999996 89999999999999999554 56999999999999999999999999999999


Q ss_pred             HhCCCcchHHHHHHHHHHHhccC--CchHHHHHHHHHHHHcCCCCHHHHHHHHHHHhhccccccccccchHHHHHHHHHH
Q 006556          242 ELGVSFFHHEVVKRALVLAMEIR--TAEPLILKLLKEAAEEGLISSSQMAKGFARLEESLDDLALDIPSARNLFQSIVPV  319 (640)
Q Consensus       242 EL~~p~fhhe~V~~ai~~alE~~--~~~~~v~~LL~~L~~~~~is~~q~~~Gf~rv~e~ldDi~lDvP~A~~~l~~~v~~  319 (640)
                      ||++|+|||+||+++|+++||++  .+++++++||++|.++|+||++||.+||.|+++.++||+||||+||++|++|+++
T Consensus       242 EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~vl~~ldDl~lDiP~A~~~la~~var  321 (358)
T 3eiq_C          242 ELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEE  321 (358)
T ss_dssp             HHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHH
T ss_pred             HccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhccHhhcccccHHHHHHHHHHH
Confidence            99999999999999999999986  4678999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCChhhhhhhccCCccc
Q 006556          320 AISEGWLDASFMKSLGEDGRVQ  341 (640)
Q Consensus       320 ~~~~g~l~~~~~~~~~~~~~~~  341 (640)
                      |+.+|||+.+|+..+|++|||.
T Consensus       322 ai~~g~l~~~f~~~~p~r~rkr  343 (358)
T 3eiq_C          322 CFQAGIISKQLRDLCPSRGRKR  343 (358)
T ss_dssp             HHHHTSSCHHHHTTCCCC----
T ss_pred             HHHCCCCCHHHHHhCcccCCcc
Confidence            9999999999999999999993
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus} Back     alignment and structure
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A Back     alignment and structure
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A Back     alignment and structure
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A Back     alignment and structure
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A Back     alignment and structure
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A Back     alignment and structure
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A Back     alignment and structure
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens} Back     alignment and structure
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 Back     alignment and structure
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens} Back     alignment and structure
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 640
d1ug3a1193 a.118.1.14 (A:1235-1427) Eukaryotic initiation fac 1e-35
d1ug3a1193 a.118.1.14 (A:1235-1427) Eukaryotic initiation fac 1e-31
d1ug3a1193 a.118.1.14 (A:1235-1427) Eukaryotic initiation fac 2e-28
d1ug3a1193 a.118.1.14 (A:1235-1427) Eukaryotic initiation fac 9e-28
d2nsza1129 a.118.1.14 (A:322-450) Programmed cell death 4, PD 5e-35
d2nsza1129 a.118.1.14 (A:322-450) Programmed cell death 4, PD 2e-34
d2nsza1129 a.118.1.14 (A:322-450) Programmed cell death 4, PD 1e-30
d2nsza1129 a.118.1.14 (A:322-450) Programmed cell death 4, PD 3e-30
>d1ug3a1 a.118.1.14 (A:1235-1427) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]} Length = 193 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: Eukaryotic initiation factor eIF4G
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  131 bits (330), Expect = 1e-35
 Identities = 37/155 (23%), Positives = 63/155 (40%), Gaps = 2/155 (1%)

Query: 50  DDYKKAVASIIEEYFSTGDVEVAASDLRELGSSEYHPYFIKRLVSMAMDRHDKEKEMASV 109
           ++ +K   +IIEEY    D++ A   ++EL S      F++  V   ++R    +E    
Sbjct: 7   EELEKKSKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQ 66

Query: 110 LLSALY-ADVISPDQIRDGFVILLESADDLAVDILDAVDILALFVARAVVDDILPPAFLT 168
           LL  L  A  +S  Q   G   +LE A+D+ +DI      LA  V   + +  +P   L 
Sbjct: 67  LLHQLLCAGHLSTAQYYQGLYEILELAEDMEIDIPHVWLYLAELVTPILQEGGVPMGELF 126

Query: 169 RAK-KTLPAASKGFQVIQTAEKSYLSAPHHAELVE 202
           R   K L    K   ++         +    ++  
Sbjct: 127 REITKPLRPLGKAASLLLEILGLLCKSMGPKKVGT 161
>d1ug3a1 a.118.1.14 (A:1235-1427) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]} Length = 193 Back     information, alignment and structure
>d1ug3a1 a.118.1.14 (A:1235-1427) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]} Length = 193 Back     information, alignment and structure
>d1ug3a1 a.118.1.14 (A:1235-1427) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]} Length = 193 Back     information, alignment and structure
>d2nsza1 a.118.1.14 (A:322-450) Programmed cell death 4, PDCD4 {Mouse (Mus musculus) [TaxId: 10090]} Length = 129 Back     information, alignment and structure
>d2nsza1 a.118.1.14 (A:322-450) Programmed cell death 4, PDCD4 {Mouse (Mus musculus) [TaxId: 10090]} Length = 129 Back     information, alignment and structure
>d2nsza1 a.118.1.14 (A:322-450) Programmed cell death 4, PDCD4 {Mouse (Mus musculus) [TaxId: 10090]} Length = 129 Back     information, alignment and structure
>d2nsza1 a.118.1.14 (A:322-450) Programmed cell death 4, PDCD4 {Mouse (Mus musculus) [TaxId: 10090]} Length = 129 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query640
d2nsza1129 Programmed cell death 4, PDCD4 {Mouse (Mus musculu 99.97
d2nsza1129 Programmed cell death 4, PDCD4 {Mouse (Mus musculu 99.97
d1ug3a1193 Eukaryotic initiation factor eIF4G {Human (Homo sa 99.96
d1ug3a1193 Eukaryotic initiation factor eIF4G {Human (Homo sa 99.95
>d2nsza1 a.118.1.14 (A:322-450) Programmed cell death 4, PDCD4 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: Programmed cell death 4, PDCD4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=2.5e-32  Score=250.24  Aligned_cols=127  Identities=31%  Similarity=0.534  Sum_probs=122.0

Q ss_pred             CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCcchHHHHHHHHHHHhccC-Cch-HHHHHHHHHHHHcCCCCHHHH
Q 006556          211 ITVEEVKKKIADLLREYVESGDAFEACRCIRELGVSFFHHEVVKRALVLAMEIR-TAE-PLILKLLKEAAEEGLISSSQM  288 (640)
Q Consensus       211 ~~~~el~~ki~~lL~EY~~s~D~~EA~~cl~EL~~p~fhhe~V~~ai~~alE~~-~~~-~~v~~LL~~L~~~~~is~~q~  288 (640)
                      +|++++++|++++|+|||+++|++||++|++||++|+|||+||+++|.++||++ ..+ +++++||++|.++|+||++||
T Consensus         1 ~pv~~l~kk~~~ll~EY~~~~D~~Ea~~~l~eL~~p~~~~e~V~~~i~~ale~~~~~r~~~~~~Ll~~L~~~~~is~~~i   80 (129)
T d2nsza1           1 QPVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM   80 (129)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCchhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence            478899999999999999999999999999999999999999999999999988 444 688999999999999999999


Q ss_pred             HHHHHHHhhccccccccccchHHHHHHHHHHHHhcCCCChhhhhhhccC
Q 006556          289 AKGFARLEESLDDLALDIPSARNLFQSIVPVAISEGWLDASFMKSLGED  337 (640)
Q Consensus       289 ~~Gf~rv~e~ldDi~lDvP~A~~~l~~~v~~~~~~g~l~~~~~~~~~~~  337 (640)
                      .+||.++++.++|+.+|+|+||+++++|+++|+.+|++|.+|+..+|+|
T Consensus        81 ~~Gf~~~l~~l~Dl~lDvP~a~~~l~~fi~rav~d~~l~~~~~~~~p~r  129 (129)
T d2nsza1          81 KRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAGIISKQLRDLCPSR  129 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTCSCHHHHHTCTTC
T ss_pred             HHHHHHHHhhCcHHhhccccHHHHHHHHHHHHHHcCCCCHHHHhhCCCC
Confidence            9999999999999999999999999999999999999999999999875
>d2nsza1 a.118.1.14 (A:322-450) Programmed cell death 4, PDCD4 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ug3a1 a.118.1.14 (A:1235-1427) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ug3a1 a.118.1.14 (A:1235-1427) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure