Citrus Sinensis ID: 006565

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640
Protein Sequence
MEADIRCSSAIQSMERKLRAACHSSDASIDNVVKVLDGLISEYETSCHGPGKWQKLATFLQQSSEGPILDLVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKVALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQELTKARLNETALGSKLRAVSHGKRARADDYEAGVGSVQEMDTNDKVLRANKRSRSTTSPLKYTQPEDGGSVFRGDDDNLSQQSNQEDYTKFTVQKLKQELTKHNFGAELLQLRNPNKKEILALYEKCILQKS
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHcccccHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHccccHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHcHHHHHHHHHHccccccHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHccccHHHHHHHHHHHEcccc
Coil and Loop (DISEMBL)
MEADIRCSSAIQSMERKLRAachssdasIDNVVKVLDGLISeyetschgpgkwQKLATFLQQSSEGPILDLVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLqgenislrekSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKVALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQELTKARLNETALGSKlravshgkraraddyeagvgsvqemdtndkvlrankrsrsttsplkytqpedggsvfrgdddnlsqqsnqedYTKFTVQKLKQELTKHNfgaellqlrnpnKKEILALYEKCILQKS
Flexible Loop (DISEMBL)
MEADIRCSSAIQSMERKLRaachssdasiDNVVKVLDGLISEYETSCHGPGKWQKLATFLQQSSEGPILDLVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSeylkryddaindKKKLADDYTSRinnlqgenislrekssslsKTVDSLkneisdwkrKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIvqertskemqqredVLREEFSSTLAEKEEEMKekatkiehaeqCLTTLRLELKAAESKMRSYEveissqkletkelSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKeakkateladRERAEAAaarkgksefenLAMERMAVIERVQRQIESlerqktdltnevnrireselealskvalleARVEEREKEIEsllesnneqrastvKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQELTKARlnetalgsklravshgkraraddyeagvgsvqemdtndkvlrankrsrsttsplkytqpedggsvFRGDDDNLSQQSNQEDYTKFTVQKLKQELTKHNFgaellqlrnpnkkeILALYEKCILQKS
Low Complexity Region (SEG)
MEADIRCSSAIQSMERKLRAACHSSDASIDNVVKVLDGLISEYETSCHGPGKWQKLATFLQQSSEGPILDLVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTaaearlaaareqalsaqeeVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAekeeemkekatkieHAEQCLTTLRLELKAAESKMRSYEVEIssqkletkelsekleAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQerckvaekeakkateladreraeaaaarKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKvallearveerekeiesllesNNEQRASTVKKLEDlleserrsraaanamaerlslEVQSAQAKLDEMQQELTKARLNETALGSKLRAVSHGKRARADDYEAGVGSVQEMDTNDKVLRANKRSRSTTSPLKYTQPEDGGSVFRGDDDNLSQQSNQEDYTKFTVQKLKQELTKHNFGAELLQLRNPNKKEILALYEKCILQKS
Disordered region (IsUnstruct)
**************************ASIDNVVKVLDGLISEYETSCHGPGKWQKLATFLQQSSEGPILDLVKRLIDQIGSE**SLMLKYR********************************************************************************************************************************WKRKYGVAVRE*****************************************************CLTTL**********************************************************************************************************************************************************************************************************************************************************************************************************************FTVQKLKQELTKHNFGAELLQLRNPNKKEILALYEKCIL***
Disordered Region (DISOPRED)
*********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************KCIL***
Disordered Region (DISEMBL)
MEADIRCSSAIQSMERKLRAACHSSDASIDNVVKVLDGLISEYETSCHGPGKWQKLATFLQQSSEGPILDLVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLR*************KNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTA**********************KRKYGVAVREAKAALEKAAIVQER*************EEFSSTL************KIEHAEQCLTTLRLELKAA***************LETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKV*************************KSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKVALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQELTKARLNETALGSKL**************EAGVGSVQEMDTNDKVLRANKRSRSTTSPLKYTQPEDGGSVFRGDDDNLSQQSNQEDYTKFTVQKLKQELTKHNFGAELLQLRNPNKKEILALYEKCILQKS
Disordered Region (DISPRO)
MEADIRCSSAIQSMERKLRAACHSSDASIDNVVKVLDGLISEYETSCHGPGKWQKLATFLQQSSEGPILDLVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKVALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQELTKARLNETALGSKLRAVSHGKRARADDYE*GVGSVQEMDTN*K*L**************************************EDYTKFTVQKLKQELTKHNFGAELLQLRNPNKKEILALYEKCILQK*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEADIRCSSAIQSMERKLRAACHSSDASIDNVVKVLDGLISEYETSCHGPGKWQKLATFLQQSSEGPILDLVKRLIDQIGSExxxxxxxxxxxxxxxxxxxxxxxxxxxxKSEYLKRYDDAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQKAMEDQVCSExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxYGVAVREAKAALEKAAIVQERTSKEMQQREDVLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAAAARKGKSEFENLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxALSKxxxxxxxxxxxxxxxxxxxxxxxxxxxxTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxETALGSKLRAVSHGKRARADDYEAGVGSVQEMDTNDKVLRANKRSRSTTSPLKYTQPEDGGSVFRGDDDNLSQQSNQEDYTKFTVQKLKQELTKHNFGAELLQLRNPNKKEILALYEKCILQKS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	640
255536707	1065	interferon-induced guanylate-binding pro	1.0	0.600	0.714	0.0
224077052	1070	predicted protein [Populus trichocarpa]	0.996	0.596	0.703	0.0
449433796	1062	PREDICTED: uncharacterized protein LOC10	0.993	0.598	0.684	0.0
356548658	1060	PREDICTED: uncharacterized protein LOC10	0.984	0.594	0.632	0.0
356521418	1060	PREDICTED: uncharacterized protein LOC10	0.984	0.594	0.629	0.0
356546617	1059	PREDICTED: uncharacterized protein LOC10	0.995	0.601	0.620	0.0
9757727	1060	unnamed protein product [Arabidopsis tha	0.976	0.589	0.596	0.0
145358912	1082	Guanylate-binding protein [Arabidopsis t	0.976	0.577	0.596	0.0
147833458	563	hypothetical protein VITISV_029762 [Viti	0.804	0.914	0.708	0.0
222632561	1062	hypothetical protein OsJ_19548 [Oryza sa	0.990	0.596	0.535	1e-178

>gi|255536707|ref|XP_002509420.1| interferon-induced guanylate-binding protein, putative [Ricinus communis] gi|223549319|gb|EEF50807.1| interferon-induced guanylate-binding protein, putative [Ricinus communis]

 Score =  912 bits (2358), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 457/640 (71%), Positives = 543/640 (84%)

Query: 1    MEADIRCSSAIQSMERKLRAACHSSDASIDNVVKVLDGLISEYETSCHGPGKWQKLATFL 60
            MEAD+RCS+AIQ MERKLR ACHSSDA++DN+VK+LDG +S+YETSCHGPGKWQKLA FL
Sbjct: 426  MEADLRCSNAIQKMERKLRTACHSSDANVDNIVKLLDGFLSDYETSCHGPGKWQKLAIFL 485

Query: 61   QQSSEGPILDLVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDD 120
            QQS EGPI DL KRL DQIGSE+SSLMLK RSIED M LL KQLE SE++KSEY++RY++
Sbjct: 486  QQSLEGPICDLAKRLNDQIGSEKSSLMLKCRSIEDKMTLLNKQLEASEKHKSEYMQRYNE 545

Query: 121  AINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKA 180
            AIN+KKKLADDY  RI+++Q     L E+ SSL K ++S K E+SDWKRK+DQ+L+KQKA
Sbjct: 546  AINEKKKLADDYMKRISDMQSSRSLLDERCSSLVKALESAKQEMSDWKRKHDQLLSKQKA 605

Query: 181  MEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAI 240
             EDQ  SEI VLKSRS+A EARLAAA EQ  SAQEE  EWKRKY + VRE KAALEKAAI
Sbjct: 606  DEDQTSSEIAVLKSRSSATEARLAAAHEQTKSAQEEAAEWKRKYDITVRETKAALEKAAI 665

Query: 241  VQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMR 300
            VQERT KE Q RED LREEF S LAEKE E+KEK  +IEHAEQCLTTL LELKAAESKM+
Sbjct: 666  VQERTGKETQLREDALREEFYSQLAEKEREIKEKNGRIEHAEQCLTTLNLELKAAESKMK 725

Query: 301  SYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQE 360
            S++ EISS KLE KE SEK E+ NAKAQS+EREARI+EQ+K++LEQKY SEFERF EVQ+
Sbjct: 726  SFDSEISSLKLEIKEWSEKFESANAKAQSYEREARILEQEKIHLEQKYGSEFERFAEVQD 785

Query: 361  RCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTD 420
            RC  AE E K+ATELAD+ RA+AA+A++ KSE + LAMER+A IER +R IESLER+K D
Sbjct: 786  RCHHAENECKRATELADKARADAASAQREKSELQKLAMERLAQIERAKRHIESLEREKND 845

Query: 421  LTNEVNRIRESELEALSKVALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERR 480
            L +EV+RIR +E+EA+S+VALLEARVEEREKEIE LL+SNNE+RAS VK L++LL++ER+
Sbjct: 846  LADEVDRIRITEMEAVSRVALLEARVEEREKEIELLLKSNNEERASNVKALKELLDAERK 905

Query: 481  SRAAANAMAERLSLEVQSAQAKLDEMQQELTKARLNETALGSKLRAVSHGKRARADDYEA 540
            + + AN  AE  SL+++ A+AKLD +QQE T  RLNE+AL +KL+A SHGKR R+DD E 
Sbjct: 906  AHSVANKRAEDFSLQLEEARAKLDALQQEFTSVRLNESALDNKLKATSHGKRLRSDDVEM 965

Query: 541  GVGSVQEMDTNDKVLRANKRSRSTTSPLKYTQPEDGGSVFRGDDDNLSQQSNQEDYTKFT 600
            GVGSVQ+M TN++ LR +K+SRST+SPLKYT PEDGGSVF GD+DN SQQ++QEDYTKFT
Sbjct: 966  GVGSVQDMGTNNRSLRQSKKSRSTSSPLKYTHPEDGGSVFMGDEDNQSQQTDQEDYTKFT 1025

Query: 601  VQKLKQELTKHNFGAELLQLRNPNKKEILALYEKCILQKS 640
            VQKLKQELTKHNFGAELLQL+ PNKK+ILALYEKC+LQKS
Sbjct: 1026 VQKLKQELTKHNFGAELLQLKTPNKKDILALYEKCVLQKS 1065

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224077052|ref|XP_002305110.1| predicted protein [Populus trichocarpa] gi|222848074|gb|EEE85621.1| predicted protein [Populus trichocarpa]

 Score =  882 bits (2280), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/641 (70%), Positives = 538/641 (83%), Gaps = 3/641 (0%)

Query: 1    MEADIRCSSAIQSMERKLRAACHSSDASIDNVVKVLDGLISEYETSCHGPGKWQKLATFL 60
            MEAD+RCS+AIQ+ME++LRAACH+SDA+IDN+VKVLDGL+SEYETSCHGPGKWQKLA FL
Sbjct: 432  MEADLRCSNAIQNMEKRLRAACHASDANIDNIVKVLDGLLSEYETSCHGPGKWQKLAMFL 491

Query: 61   QQSSEGPILDLVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDD 120
            QQS EG ILDL KRL D+IGSE+SSLML+  S+ED M LL KQLE SE+ KSEY+KRYD+
Sbjct: 492  QQSLEGSILDLAKRLNDKIGSEKSSLMLRCHSMEDKMALLHKQLEASEKDKSEYMKRYDE 551

Query: 121  AINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKA 180
            AIN+KKKLADDY  RIN+LQ    SL E+ SSL K ++S K E S+WKRK+DQVL+KQKA
Sbjct: 552  AINEKKKLADDYMRRINDLQSNRGSLDERCSSLVKALESAKQETSNWKRKHDQVLSKQKA 611

Query: 181  MEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAI 240
             E+Q  SEI +LKSRS+A+EARLAAA EQ  SA+E+  EWKRKY +AVRE KAALEKAA 
Sbjct: 612  DEEQAASEIAILKSRSSASEARLAAAHEQTRSAEEDAAEWKRKYDIAVRETKAALEKAAN 671

Query: 241  VQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMR 300
            VQERT+KE Q RED LREEFSS L  KE+E+KEK  +IE+AEQCLT L LELKAAESKM+
Sbjct: 672  VQERTNKETQLREDALREEFSSHLVVKEDEIKEKNRRIEYAEQCLTALNLELKAAESKMK 731

Query: 301  SYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQE 360
            SY  EISS KLE KEL EKLE  N KAQS+++EARI+EQ+K++LEQ+Y+SEFERF EVQE
Sbjct: 732  SYGTEISSLKLEIKELVEKLETANTKAQSYDKEARILEQEKIHLEQRYQSEFERFAEVQE 791

Query: 361  RCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTD 420
            RC  AEKE K+ATELAD+ RA+A +A+K K+EF+ LAMER+A IER QR IESL+RQK +
Sbjct: 792  RCNHAEKECKRATELADKARADAVSAQKEKNEFQKLAMERLAQIERAQRHIESLDRQKNN 851

Query: 421  LTNEVNRIRESELEALSKVALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERR 480
            L  E+ R+R SEL+A+SKV+LLEARVEEREKEIESLL+SNNE+RASTVK L+DLLE ER+
Sbjct: 852  LAGELERVRVSELDAVSKVSLLEARVEEREKEIESLLKSNNEERASTVKALQDLLEDERK 911

Query: 481  SRAAANAMAERLSLEVQSAQAKLDEMQQELTKARLNETALGSKLRAVSHGKRARADDYEA 540
            + + AN  AE  SL+++ A+AKLD +QQE T  RLNE+AL +KL+A SHGKR R D+ E 
Sbjct: 912  AHSVANKRAEDFSLQLEVARAKLDALQQEFTSVRLNESALDNKLKAASHGKRFRTDNVEM 971

Query: 541  GVGSVQEMDTNDKVLRANKRSRSTTSPLKYTQPEDGGSVFRG-DDDNLSQQSNQEDYTKF 599
            G GSVQ+  TND+  R NKRSRSTTSP+ +TQPEDGGSVF+G DDDN SQQ+ QEDY KF
Sbjct: 972  GGGSVQDAVTNDR--RVNKRSRSTTSPVMFTQPEDGGSVFKGDDDDNQSQQTGQEDYKKF 1029

Query: 600  TVQKLKQELTKHNFGAELLQLRNPNKKEILALYEKCILQKS 640
            T QKL+QELTKHNFGAELLQLRN NKK++LALYEKC+L+KS
Sbjct: 1030 TAQKLRQELTKHNFGAELLQLRNNNKKDVLALYEKCVLRKS 1070

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433796|ref|XP_004134683.1| PREDICTED: uncharacterized protein LOC101220489 [Cucumis sativus]

 Score =  831 bits (2146), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/638 (68%), Positives = 545/638 (85%), Gaps = 2/638 (0%)

Query: 2    EADIRCSSAIQSMERKLRAACHSSDASIDNVVKVLDGLISEYETSCHGPGKWQKLATFLQ 61
            EAD++C++AIQSME++LR ACH+SDA+I+NVVKVL  L+SEYE S HGPGKWQKLATFL 
Sbjct: 425  EADLQCTNAIQSMEKRLRVACHASDANINNVVKVLGALLSEYEASSHGPGKWQKLATFLH 484

Query: 62   QSSEGPILDLVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDA 121
            QS EGP+LDL+KRLIDQ+GSE++SL LK RSIED +  LKKQLE SE+YKS+YLKRY+DA
Sbjct: 485  QSLEGPVLDLIKRLIDQVGSEKNSLALKCRSIEDQLNFLKKQLEASEKYKSDYLKRYEDA 544

Query: 122  INDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAM 181
            INDKKK+ADDY +RI NLQG+  SL E+ SSL KTV+  K E  DWKRKY+ VL+K KA 
Sbjct: 545  INDKKKVADDYMNRITNLQGDCSSLDERCSSLKKTVEQAKQESLDWKRKYETVLSKLKAE 604

Query: 182  EDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIV 241
            EDQ  S+I +LKSRS+AAEARLAAAREQ+ SAQEE EEWKRK+ +A+R+ KAALEKAA+ 
Sbjct: 605  EDQANSDIAILKSRSSAAEARLAAAREQSQSAQEEAEEWKRKFEIALRDTKAALEKAALA 664

Query: 242  QERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRS 301
            +ERT+K+ + RED LR+EFS+ L+ KE+E+K+KATKI+  E+ LTTL LELK AESK+ S
Sbjct: 665  EERTNKQTRLREDDLRKEFSNILSVKEDELKDKATKIKQVEEHLTTLGLELKVAESKIGS 724

Query: 302  YEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQER 361
            Y+VE+SS + E K+L E+LE  NAKAQSFE+EAR++ Q+KV+L+QKY SEF+RF+EVQER
Sbjct: 725  YDVEVSSLRHEIKDLKERLETANAKAQSFEKEARMLLQEKVHLDQKYLSEFQRFDEVQER 784

Query: 362  CKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDL 421
            C+ AE EAKKATE+AD+ R EA+AA++GK+E + LAMERMA IER +RQIE+LERQK DL
Sbjct: 785  CRFAEHEAKKATEIADKARNEASAAQEGKNEMQRLAMERMAQIERAERQIENLERQKKDL 844

Query: 422  TNEVNRIRESELEALSKVALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRS 481
              ++ RIRESE+EA+S+VA LE RVEEREKEIESLL+SNNEQR STV+ L+ LL+SER +
Sbjct: 845  VEDLQRIRESEMEAVSRVASLEGRVEEREKEIESLLKSNNEQRTSTVQVLQGLLDSERSA 904

Query: 482  RAAANAMAERLSLEVQSAQAKLDEMQQELTKARLNETALGSKLRAVSHGKRARADDYEAG 541
             A AN  AE LSL++QSA AK+D +QQ+LT+ RLNETAL  +L+  SHGKR RADD + G
Sbjct: 905  HAEANNRAEALSLQLQSAHAKIDLLQQQLTEVRLNETALDGRLKTASHGKRPRADDGDMG 964

Query: 542  VGSVQEMDTNDKVLRANKRSRSTTSPLKYTQPEDGGSVFRGD-DDNLSQQSNQEDYTKFT 600
            + SVQ+MDT++++LR NKRSRST+SP+KYTQPEDGGS+F+GD D+N SQQ+NQ DYTKFT
Sbjct: 965  MESVQDMDTSERILRVNKRSRSTSSPMKYTQPEDGGSIFKGDEDNNHSQQTNQ-DYTKFT 1023

Query: 601  VQKLKQELTKHNFGAELLQLRNPNKKEILALYEKCILQ 638
            VQKLKQELTKHNFGAELLQL+NPNKK++L+LYEKC+L+
Sbjct: 1024 VQKLKQELTKHNFGAELLQLKNPNKKDVLSLYEKCVLK 1061

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548658|ref|XP_003542717.1| PREDICTED: uncharacterized protein LOC100808644 [Glycine max]

 Score =  763 bits (1969), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/640 (63%), Positives = 515/640 (80%), Gaps = 10/640 (1%)

Query: 1    MEADIRCSSAIQSMERKLRAACHSSDASIDNVVKVLDGLISEYETSCHGPGKWQKLATFL 60
            MEAD++CS+AIQSME++LRAAC++SDA IDNV KVLD L+SEYE +  GPGKWQ+LA FL
Sbjct: 431  MEADLQCSNAIQSMEKRLRAACNASDAKIDNVAKVLDALLSEYEKTIQGPGKWQRLAVFL 490

Query: 61   QQSSEGPILDLVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDD 120
            QQS EGP+LDLVKRLI  I SE+ S  L+YRSIE+ + LL K+LE +E  KS Y+KRY+D
Sbjct: 491  QQSFEGPVLDLVKRLIATIESEKRSHALQYRSIEEKVDLLTKRLEATEGEKSNYIKRYED 550

Query: 121  AINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKA 180
            AINDKKKL D+Y +RI +LQ    SL E+ SSL KT+DS K +  DWKRKY+QVL++QKA
Sbjct: 551  AINDKKKLMDEYKNRITDLQANRRSLDERYSSLLKTLDSTKQDSMDWKRKYEQVLSRQKA 610

Query: 181  MEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAI 240
             EDQ  SEI  LKSRS AAEARLAAA+EQA SAQEE EEWKRKY +A REA++AL+KAA 
Sbjct: 611  EEDQASSEIAALKSRSGAAEARLAAAKEQAQSAQEEAEEWKRKYDIARREAQSALQKAAN 670

Query: 241  VQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMR 300
            VQERT+K+ Q RED LREEFS TLAEKE+E+KEK  KIEHAE+CLTTL LELKAAESK+R
Sbjct: 671  VQERTNKQTQLREDALREEFSGTLAEKEDEIKEKTAKIEHAEKCLTTLNLELKAAESKIR 730

Query: 301  SYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQE 360
            SY+ EISS ++E KEL+EKL+A NAKAQS+EREA + +Q+K +LEQKY +EF+RF+EVQE
Sbjct: 731  SYDTEISSLRIEIKELTEKLKAENAKAQSYEREAIVFQQEKNHLEQKYHTEFKRFDEVQE 790

Query: 361  RCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTD 420
            RCK AEKEA +ATE+AD+ RAEA  A+K +SE + LAMER+A IER +R+IE+L R+K +
Sbjct: 791  RCKTAEKEAARATEVADKARAEAGMAQKERSEMQRLAMERLAQIERAERRIENLGREKDN 850

Query: 421  LTNEVNRIRESELEALSKVALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERR 480
            L  E+ R+R+SE +AL++   LE +V++REK++E+LL+ +   R ++ + LE LLE+ER 
Sbjct: 851  LEAELRRVRDSEKDALTRAVKLEEKVQQREKDLEALLDKDKTHRRNSAQILEQLLETERE 910

Query: 481  SRAAANAMAERLSLEVQSAQAKLDEMQQELTKARLNETALGSKLRAVSHGKRARADDYEA 540
            + A AN  AE LSL++QSAQAK+D + QELTK RLNETAL SKL   SHGKR R DD   
Sbjct: 911  AHAQANNRAEALSLQLQSAQAKIDSLHQELTKFRLNETALDSKLNTASHGKRMRVDD--- 967

Query: 541  GVGSVQEMDTNDKVLRANKRSRSTTSPLKYTQPEDGGSVFRGDDDNLSQQSNQEDYTKFT 600
             +G   +MD + ++++  KR+RST     Y+QPEDGGS+F G ++NLSQ++++EDY KFT
Sbjct: 968  NIGD--DMDVSPRIVKGTKRTRST-----YSQPEDGGSIFEGAEENLSQRTSEEDYRKFT 1020

Query: 601  VQKLKQELTKHNFGAELLQLRNPNKKEILALYEKCILQKS 640
            VQ+LKQELTK N+G +LL+L+NPNKKEI+ALYEKC+LQKS
Sbjct: 1021 VQRLKQELTKLNYGDQLLRLKNPNKKEIIALYEKCVLQKS 1060

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521418|ref|XP_003529353.1| PREDICTED: uncharacterized protein LOC100796442 [Glycine max]

 Score =  757 bits (1954), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/640 (62%), Positives = 512/640 (80%), Gaps = 10/640 (1%)

Query: 1    MEADIRCSSAIQSMERKLRAACHSSDASIDNVVKVLDGLISEYETSCHGPGKWQKLATFL 60
            MEAD++CS+AIQSME++LRAAC++SDA IDNV KVLD L+SEYE +  GPGKWQKLA FL
Sbjct: 431  MEADLQCSNAIQSMEKRLRAACNASDAKIDNVAKVLDALLSEYEKTIQGPGKWQKLAVFL 490

Query: 61   QQSSEGPILDLVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDD 120
            QQS EGP+LDLVKRLI  + SE+ S  L+ RSIE+ + LL K+LE +E  KS Y+KRY+D
Sbjct: 491  QQSFEGPVLDLVKRLIATVESEKRSHALQCRSIEEKVDLLTKRLEATEGEKSNYIKRYED 550

Query: 121  AINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKA 180
            AINDKKKL D+Y + I +LQ    SL E+ SSL KT+DS K E  DWKRKY+QVL++QKA
Sbjct: 551  AINDKKKLMDEYKNCITDLQANRRSLDERYSSLLKTLDSTKQESMDWKRKYEQVLSRQKA 610

Query: 181  MEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAI 240
             EDQ  SEI  LKSRS AAEARLAAA+EQA SAQEE EEWKRKY +A REA++AL+KAA 
Sbjct: 611  EEDQASSEIAALKSRSGAAEARLAAAKEQAQSAQEEAEEWKRKYDIARREAQSALQKAAN 670

Query: 241  VQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMR 300
            VQERT+K+ Q RED LREEFS TLAEKE+E+KEK  KIEHAE+CLTTL LELKAAESK+R
Sbjct: 671  VQERTNKQTQLREDALREEFSGTLAEKEDEIKEKTAKIEHAEKCLTTLNLELKAAESKIR 730

Query: 301  SYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQE 360
            SY+ EISS ++E KEL+EKL+A NAKAQS+EREA + +Q+K +LEQKY +EF+RF+EVQE
Sbjct: 731  SYDTEISSLRIEIKELTEKLKAENAKAQSYEREAIVFQQEKNHLEQKYHTEFKRFDEVQE 790

Query: 361  RCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTD 420
            RCK AEKEA +ATE+AD+ RAEA  A+K +SE + LAMER+A IER +R+IE+L R+K +
Sbjct: 791  RCKTAEKEAARATEVADKARAEAGMAQKERSEMQRLAMERLAQIERAERRIENLGREKDN 850

Query: 421  LTNEVNRIRESELEALSKVALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERR 480
            L  E+ R+R+SE +AL++   LE +V++REK++E+LL+ +   R ++ + LE LLE+ER 
Sbjct: 851  LEAELQRVRDSEKDALTRAVKLEEKVQQREKDLEALLDKDKTHRRNSAQILEQLLETERE 910

Query: 481  SRAAANAMAERLSLEVQSAQAKLDEMQQELTKARLNETALGSKLRAVSHGKRARADDYEA 540
            + A AN  AE LSL++QSAQAK+D + QELTK RLNETAL SKL   SHGKR R DD   
Sbjct: 911  AHAQANNRAEALSLQLQSAQAKIDSLHQELTKFRLNETALDSKLNTASHGKRMRVDD--- 967

Query: 541  GVGSVQEMDTNDKVLRANKRSRSTTSPLKYTQPEDGGSVFRGDDDNLSQQSNQEDYTKFT 600
             +G   +MD + ++++  KR+RST     YTQPEDGGS+F G ++NLSQ+++++DY KFT
Sbjct: 968  NIGD--DMDVSPRIVKGTKRTRST-----YTQPEDGGSIFEGAEENLSQRTSEDDYRKFT 1020

Query: 601  VQKLKQELTKHNFGAELLQLRNPNKKEILALYEKCILQKS 640
            VQ+LKQELTKHN G +LL+L+NPNKK+I+ALYEKC+L KS
Sbjct: 1021 VQRLKQELTKHNHGDQLLRLKNPNKKDIIALYEKCVLHKS 1060

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356546617|ref|XP_003541721.1| PREDICTED: uncharacterized protein LOC100776402 [Glycine max]

 Score =  721 bits (1860), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/640 (62%), Positives = 514/640 (80%), Gaps = 3/640 (0%)

Query: 1    MEADIRCSSAIQSMERKLRAACHSSDASIDNVVKVLDGLISEYETSCHGPGKWQKLATFL 60
            MEAD++CS+AIQSME++LRAAC++SDA IDNV KVLD L+ EYE S   P KWQKLA FL
Sbjct: 423  MEADLQCSNAIQSMEKRLRAACNASDAKIDNVAKVLDALLCEYEKSIQAPEKWQKLAVFL 482

Query: 61   QQSSEGPILDLVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDD 120
            QQS EGP+LDL +RLI+++ S++SSL L YR  ED + LL K+LE SE  KSEY+KRY+D
Sbjct: 483  QQSFEGPVLDLTRRLINKVESDKSSLSLNYRLTEDKIALLNKRLETSESEKSEYIKRYED 542

Query: 121  AINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKA 180
            AINDKK+L D+Y +RI  L+    SL E+ SSLSKT+DS K E  DWKRKY+QVL++ K+
Sbjct: 543  AINDKKQLTDEYMNRITELRASCRSLDERYSSLSKTLDSTKQESMDWKRKYEQVLSRHKS 602

Query: 181  MEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAI 240
             EDQ  SEI  LKS S+AAEARLAAAREQ+ SAQEE EEWKRKY +AVREAKAALEKAAI
Sbjct: 603  EEDQASSEIAALKSHSSAAEARLAAAREQSQSAQEEAEEWKRKYEIAVREAKAALEKAAI 662

Query: 241  VQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMR 300
            VQE T+K+ Q RED LREEFSSTLAEKE+++KEK  KIEHAEQCLTTL+LELKAAESK+R
Sbjct: 663  VQEYTNKQSQLREDALREEFSSTLAEKEDKIKEKTAKIEHAEQCLTTLKLELKAAESKIR 722

Query: 301  SYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQE 360
            +YE EIS  +LE K+L E+L+  NA+AQS+E++  +++Q+  +L++KY +E  +FEEVQE
Sbjct: 723  NYESEISPLRLEIKKLIERLKTENARAQSYEKDVMVIQQEINHLKEKYNTECIKFEEVQE 782

Query: 361  RCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTD 420
            RC++AEKEA +ATE+AD+ RAEA  A+K  SE + LA+ER+A IER +R+IE+LER+K +
Sbjct: 783  RCQIAEKEAVRATEVADKARAEANLAQKEMSEMQRLAIERLAHIERAERKIENLEREKDN 842

Query: 421  LTNEVNRIRESELEALSKVALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERR 480
            L  E+ R+R+SE +AL +V+ LE +V +REK+I+SLLE +  QR ++ + L+ LLE+ER 
Sbjct: 843  LEGELQRVRDSEKDALVRVSTLEEKVGQREKDIDSLLEKDGTQRRNSTQILDQLLETERE 902

Query: 481  SRAAANAMAERLSLEVQSAQAKLDEMQQELTKARLNETALGSKLRAVSHGKRARADDYEA 540
            + A AN+ A+ LSL++QSAQAK+D + QELTK +LNET L S+L+  S GKR R DD   
Sbjct: 903  ACAQANSRADSLSLQLQSAQAKIDSLHQELTKFQLNETILDSELKTASRGKRLRVDD--I 960

Query: 541  GVGSVQEMDTNDKVLRANKRSRSTTSPLKYTQPEDGGSVFRGDDDNLSQQSNQEDYTKFT 600
            GV S Q+MD++ ++LR  KRS+ST+SPLK++  ED  S+  GD+DN SQQ+N++DY KFT
Sbjct: 961  GVESGQDMDSSPRILRGTKRSKSTSSPLKFSHLEDVSSI-GGDEDNYSQQTNEDDYKKFT 1019

Query: 601  VQKLKQELTKHNFGAELLQLRNPNKKEILALYEKCILQKS 640
            +QKLKQELTKHN+G +LL+L+NPNKK ILALYEKC+LQKS
Sbjct: 1020 IQKLKQELTKHNYGDQLLELKNPNKKAILALYEKCVLQKS 1059

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9757727|dbj|BAB08252.1| unnamed protein product [Arabidopsis thaliana]

 Score =  719 bits (1855), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/649 (59%), Positives = 496/649 (76%), Gaps = 24/649 (3%)

Query: 1    MEADIRCSSAIQSMERKLRAACHSSDASIDNVVKVLDGLISEYETSCHGPGKWQKLATFL 60
            MEAD+RC+S IQ ME++LRAACH+S+A++DNVVKVL+  ++EYE SCHGPGKWQKL+ FL
Sbjct: 408  MEADLRCTSTIQRMEKQLRAACHASNANMDNVVKVLEARLAEYEASCHGPGKWQKLSVFL 467

Query: 61   QQSSEGPILDLVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDD 120
            QQS EGPI DL KRLID I  E++SL +K+RS+ED MK LK+QL+DSERYK EY KRYD+
Sbjct: 468  QQSLEGPIYDLTKRLIDSIAIEKNSLAMKFRSVEDAMKHLKQQLDDSERYKLEYQKRYDE 527

Query: 121  AINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKA 180
            + NDKKKL D Y  RI  LQGEN SL E+ S+L KTV+S K EI +W R YDQ++ KQKA
Sbjct: 528  SNNDKKKLEDIYRERITKLQGENSSLNERCSTLVKTVESKKEEIKEWIRNYDQIVLKQKA 587

Query: 181  MEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAI 240
            +++Q+ SE+EVL++RST +EAR+AAAREQA SA EE +EWKRKY  AV EA++AL+KAA 
Sbjct: 588  VQEQLSSEMEVLRTRSTTSEARVAAAREQAKSAAEETKEWKRKYDYAVGEARSALQKAAS 647

Query: 241  VQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMR 300
            VQER+ KE Q RED LREEFS TLA K+EE+ EKATK+E AEQ LT LR +LK AESK+ 
Sbjct: 648  VQERSGKETQLREDALREEFSITLANKDEEITEKATKLEKAEQSLTVLRSDLKVAESKLE 707

Query: 301  SYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQE 360
            S+EVE++S +L   E+++KL++ N KA ++E+EA  +EQ+K+ +EQKY+SEF+RF+EV+E
Sbjct: 708  SFEVELASLRLTLSEMTDKLDSANKKALAYEKEANKLEQEKIRMEQKYRSEFQRFDEVKE 767

Query: 361  RCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTD 420
            RCK AE EAK+ATELAD+ R +A  ++K KSE + LAMER+A IER +RQ+E+LERQKTD
Sbjct: 768  RCKAAEIEAKRATELADKARTDAVTSQKEKSESQRLAMERLAQIERAERQVENLERQKTD 827

Query: 421  LTNEVNRIRESELEALSKVALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERR 480
            L +E++R+R SE+EA+SKV +LEARVEEREKEI SL++  N QRA  VK LE LL+ ER+
Sbjct: 828  LEDELDRLRVSEMEAVSKVTILEARVEEREKEIGSLIKETNAQRAHNVKSLEKLLDEERK 887

Query: 481  SRAAANAMAERLSLEVQSAQAKLDEMQQELTKARLNETALGSKLRAV--SHGKRARADDY 538
            +  AAN  AE LSLE+Q+AQA +D +QQEL +ARL ETAL +K+RA   SHGKR+R +D 
Sbjct: 888  AHIAANRRAEALSLELQAAQAHVDNLQQELAQARLKETALDNKIRAASSSHGKRSRFED- 946

Query: 539  EAGVGSVQEMDTN---DKVLRANKRSRSTTSPLKYTQPEDGGSVFRGDDDNLSQQSN--- 592
                  V +MD     D++LR NKR+RS       T+ +D G    GD+D  S Q N   
Sbjct: 947  ------VVDMDIGEGSDRILRTNKRARS-------TRGDDHGPTDEGDEDFQSHQDNGEE 993

Query: 593  --QEDYTKFTVQKLKQELTKHNFGAELLQLRNPNKKEILALYEKCILQK 639
              +EDY K TVQ LK ELTK++ G  LL   + NKKEILALYE  +L K
Sbjct: 994  EEEEDYRKLTVQNLKHELTKYDCGHLLLNRGHQNKKEILALYEAHVLPK 1042

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145358912|ref|NP_199419.2| Guanylate-binding protein [Arabidopsis thaliana] gi|332007951|gb|AED95334.1| Guanylate-binding protein [Arabidopsis thaliana]

 Score =  718 bits (1853), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/649 (59%), Positives = 496/649 (76%), Gaps = 24/649 (3%)

Query: 1    MEADIRCSSAIQSMERKLRAACHSSDASIDNVVKVLDGLISEYETSCHGPGKWQKLATFL 60
            MEAD+RC+S IQ ME++LRAACH+S+A++DNVVKVL+  ++EYE SCHGPGKWQKL+ FL
Sbjct: 430  MEADLRCTSTIQRMEKQLRAACHASNANMDNVVKVLEARLAEYEASCHGPGKWQKLSVFL 489

Query: 61   QQSSEGPILDLVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDD 120
            QQS EGPI DL KRLID I  E++SL +K+RS+ED MK LK+QL+DSERYK EY KRYD+
Sbjct: 490  QQSLEGPIYDLTKRLIDSIAIEKNSLAMKFRSVEDAMKHLKQQLDDSERYKLEYQKRYDE 549

Query: 121  AINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKA 180
            + NDKKKL D Y  RI  LQGEN SL E+ S+L KTV+S K EI +W R YDQ++ KQKA
Sbjct: 550  SNNDKKKLEDIYRERITKLQGENSSLNERCSTLVKTVESKKEEIKEWIRNYDQIVLKQKA 609

Query: 181  MEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAI 240
            +++Q+ SE+EVL++RST +EAR+AAAREQA SA EE +EWKRKY  AV EA++AL+KAA 
Sbjct: 610  VQEQLSSEMEVLRTRSTTSEARVAAAREQAKSAAEETKEWKRKYDYAVGEARSALQKAAS 669

Query: 241  VQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMR 300
            VQER+ KE Q RED LREEFS TLA K+EE+ EKATK+E AEQ LT LR +LK AESK+ 
Sbjct: 670  VQERSGKETQLREDALREEFSITLANKDEEITEKATKLEKAEQSLTVLRSDLKVAESKLE 729

Query: 301  SYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQE 360
            S+EVE++S +L   E+++KL++ N KA ++E+EA  +EQ+K+ +EQKY+SEF+RF+EV+E
Sbjct: 730  SFEVELASLRLTLSEMTDKLDSANKKALAYEKEANKLEQEKIRMEQKYRSEFQRFDEVKE 789

Query: 361  RCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTD 420
            RCK AE EAK+ATELAD+ R +A  ++K KSE + LAMER+A IER +RQ+E+LERQKTD
Sbjct: 790  RCKAAEIEAKRATELADKARTDAVTSQKEKSESQRLAMERLAQIERAERQVENLERQKTD 849

Query: 421  LTNEVNRIRESELEALSKVALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERR 480
            L +E++R+R SE+EA+SKV +LEARVEEREKEI SL++  N QRA  VK LE LL+ ER+
Sbjct: 850  LEDELDRLRVSEMEAVSKVTILEARVEEREKEIGSLIKETNAQRAHNVKSLEKLLDEERK 909

Query: 481  SRAAANAMAERLSLEVQSAQAKLDEMQQELTKARLNETALGSKLRAV--SHGKRARADDY 538
            +  AAN  AE LSLE+Q+AQA +D +QQEL +ARL ETAL +K+RA   SHGKR+R +D 
Sbjct: 910  AHIAANRRAEALSLELQAAQAHVDNLQQELAQARLKETALDNKIRAASSSHGKRSRFED- 968

Query: 539  EAGVGSVQEMDTN---DKVLRANKRSRSTTSPLKYTQPEDGGSVFRGDDDNLSQQSN--- 592
                  V +MD     D++LR NKR+RS       T+ +D G    GD+D  S Q N   
Sbjct: 969  ------VVDMDIGEGSDRILRTNKRARS-------TRGDDHGPTDEGDEDFQSHQDNGEE 1015

Query: 593  --QEDYTKFTVQKLKQELTKHNFGAELLQLRNPNKKEILALYEKCILQK 639
              +EDY K TVQ LK ELTK++ G  LL   + NKKEILALYE  +L K
Sbjct: 1016 EEEEDYRKLTVQNLKHELTKYDCGHLLLNRGHQNKKEILALYEAHVLPK 1064

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147833458|emb|CAN77469.1| hypothetical protein VITISV_029762 [Vitis vinifera]

 Score =  678 bits (1750), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/515 (70%), Positives = 437/515 (84%)

Query: 125 KKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQ 184
           ++ L  DY SRI NLQ +  SL E+ SSLSKT+DS + E  +WKRKY+QVL KQKA ED 
Sbjct: 3   RRNLLIDYMSRITNLQSKGSSLEERCSSLSKTLDSARQESLEWKRKYEQVLGKQKAEEDT 62

Query: 185 VCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQER 244
             +EI +LKSRS+AA+ARLAAAREQA SAQEE EEWKRKY +AVREAK ALEKAAIVQER
Sbjct: 63  ANAEIAILKSRSSAADARLAAAREQAQSAQEEAEEWKRKYDIAVREAKTALEKAAIVQER 122

Query: 245 TSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEV 304
           T+K+ Q RED LR EFS +LA+KE+E+K+KA KIE+AEQC+TTL LELKAAESKM+SY+V
Sbjct: 123 TTKQTQLREDALRAEFSDSLADKEKEIKDKAAKIEYAEQCMTTLNLELKAAESKMKSYDV 182

Query: 305 EISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKV 364
           EISS KLE KEL EKLEAVNAKAQSFEREAR++EQ+K++LEQKY+SEF+RFEEVQERCK+
Sbjct: 183 EISSLKLEIKELGEKLEAVNAKAQSFEREARMLEQEKIHLEQKYRSEFDRFEEVQERCKI 242

Query: 365 AEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNE 424
           AEKEAK+ATELAD+ RAEA +A+K K+E   LAMER+A IER +R IE+LERQKTDL +E
Sbjct: 243 AEKEAKRATELADKARAEAVSAQKEKNEIHRLAMERLAQIERAERHIENLERQKTDLADE 302

Query: 425 VNRIRESELEALSKVALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAA 484
           V  +R SE+EALSKV LLE  VEEREKEIESL++SNNEQRASTV+ LE LLESER +RA 
Sbjct: 303 VQSLRVSEVEALSKVTLLEGMVEEREKEIESLMKSNNEQRASTVQVLEGLLESERAARAE 362

Query: 485 ANAMAERLSLEVQSAQAKLDEMQQELTKARLNETALGSKLRAVSHGKRARADDYEAGVGS 544
           AN  AE LS+++QS Q KLD +QQ+LT  RLNETAL  KL++ SHGKR+R DD++ G+ S
Sbjct: 363 ANNRAEALSVQLQSTQGKLDLLQQQLTSVRLNETALDGKLKSASHGKRSRVDDFDLGIES 422

Query: 545 VQEMDTNDKVLRANKRSRSTTSPLKYTQPEDGGSVFRGDDDNLSQQSNQEDYTKFTVQKL 604
           VQ+MD N+++ R NKRSRSTTSPLK+TQ EDGGS+F+ ++DN SQQ+N EDYTKFTVQKL
Sbjct: 423 VQDMDVNERITRGNKRSRSTTSPLKFTQSEDGGSIFKANEDNNSQQTNPEDYTKFTVQKL 482

Query: 605 KQELTKHNFGAELLQLRNPNKKEILALYEKCILQK 639
           KQELTKHN+GAELLQLRNPNK++ILALYEK   Q+
Sbjct: 483 KQELTKHNYGAELLQLRNPNKRDILALYEKHTFQR 517

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222632561|gb|EEE64693.1| hypothetical protein OsJ_19548 [Oryza sativa Japonica Group]

 Score =  633 bits (1632), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 345/644 (53%), Positives = 475/644 (73%), Gaps = 10/644 (1%)

Query: 1    MEADIRCSSAIQSMERKLRAACHSSDASIDNVVKVLDGLISEYETSCHGPGKWQKLATFL 60
            +EAD++CS+ IQSME K+R AC+  DA +D++V+++DGL++EYE+  +GPGKW+KLATFL
Sbjct: 424  LEADLQCSNRIQSMESKIRTACNRPDAKLDDIVRLIDGLLTEYESKSYGPGKWKKLATFL 483

Query: 61   QQSSEGPILDLVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDD 120
            QQ   GP+L L +R I+ I +ER+SL LK  S +D + LL+KQLE SE +++EYL+RY++
Sbjct: 484  QQCLAGPVLYLFRRQIEHIDAERNSLRLKCSSNDDKLALLRKQLEASEGHRAEYLRRYEE 543

Query: 121  AINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKA 180
            +INDK+K++ DY+ RI  LQ ++  L E+  SLS  +D+ K E  DWK KYD  L +QKA
Sbjct: 544  SINDKQKISRDYSGRIAELQTKSSKLEERCVSLSSALDNAKRESVDWKNKYDHNLLQQKA 603

Query: 181  MEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAI 240
             E ++ S+I  L+SR   +E RL+A REQA SAQEE  EWKRKY VAV EAK AL++AA+
Sbjct: 604  DESKLKSQIASLESRVNISEGRLSAVREQAESAQEEASEWKRKYEVAVSEAKTALQRAAV 663

Query: 241  VQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMR 300
             QERT+K++Q+RED LR E +S L+EKEEE+    TKI   E   T L   L+A E+K++
Sbjct: 664  AQERTNKKVQEREDALRAELASQLSEKEEEIARLNTKINQTEIHATNLISRLEATEAKLK 723

Query: 301  SYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQE 360
            ++E +  + K E + L+  LE+   +AQS E+E +I+EQ+K +L++KY +E +RF+E   
Sbjct: 724  NHESDSLALKEEIRSLTVSLESFRTEAQSREKEVKILEQEKNHLQEKYLTECKRFDEADS 783

Query: 361  RCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTD 420
            RCK AE+EAK+ATELAD  RAEA A++K K E + LAMER+A+IER++RQ+E LER+K  
Sbjct: 784  RCKEAEREAKRATELADVARAEAVASQKDKGEAQRLAMERLALIERMERQVEGLEREKNK 843

Query: 421  LTNEVNRIRESELEALSKVALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERR 480
            +  E+ R+ +SE +A+ KV+ LE RV+EREKEI+ +++ +N+QR+STV+ LE LLE+ER 
Sbjct: 844  MLEEIERVGQSEKDAVCKVSSLEQRVDEREKEIDEMMQRSNQQRSSTVQVLESLLETERE 903

Query: 481  SRAAANAMAERLSLEVQSAQAKLDEMQQELTKARLNETALGSKLRAVSHGKRARADDYEA 540
            + A AN  AE LSL++Q+ Q+KLD +QQELT  R NETAL SKL+A SH +R R +  E 
Sbjct: 904  ACAEANRRAEALSLQLQATQSKLDMLQQELTSVRFNETALDSKLKA-SHARRLRGEATE- 961

Query: 541  GVGSVQEMDT-NDKVLRANKRSRSTTSPLKYTQPEDGGSVFRGDD-DNLSQQSNQ---ED 595
               SV +MD  +D   R  KRS+STTSP K    EDGGSVF G+D +N SQQ+ +   ED
Sbjct: 962  ---SVHDMDIDDDNTGRRRKRSKSTTSPFKSNHTEDGGSVFVGEDTNNGSQQAQETETED 1018

Query: 596  YTKFTVQKLKQELTKHNFGAELLQLRNPNKKEILALYEKCILQK 639
            YTKFTV KLKQELTKH FGA+LLQL+NPNKK+I+ALYEK ++ K
Sbjct: 1019 YTKFTVLKLKQELTKHGFGAQLLQLKNPNKKDIVALYEKHVVGK 1062

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00040459 hypothetical protein (1070 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	640
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-12
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-11
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-11
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-10
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-10
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-09
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	7e-09
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-08
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-08
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-07
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	7e-07
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	7e-07
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	1e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-06
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	2e-06
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	4e-06
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	5e-06
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	5e-06
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	7e-06
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	9e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-04
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	1e-04
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	1e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-04
pfam12128	1198	pfam12128, DUF3584, Protein of unknown function (D	2e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	5e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	5e-04
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	5e-04
COG2433	652	COG2433, COG2433, Uncharacterized conserved protei	5e-04
PRK05771	646	PRK05771, PRK05771, V-type ATP synthase subunit I;	6e-04
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	7e-04
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	7e-04
COG3264	835	COG3264, COG3264, Small-conductance mechanosensiti	7e-04
TIGR02680	1353	TIGR02680, TIGR02680, TIGR02680 family protein	0.001
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	0.002
PHA02562	562	PHA02562, 46, endonuclease subunit; Provisional	0.002
pfam13514	1118	pfam13514, AAA_27, AAA domain	0.002
COG4942	420	COG4942, COG4942, Membrane-bound metallopeptidase	0.003
TIGR03319	514	TIGR03319, RNase_Y, ribonuclease Y	0.003
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	0.004
pfam05557	722	pfam05557, MAD, Mitotic checkpoint protein	0.004

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 70.9 bits (174), Expect = 1e-12
 Identities = 77/343 (22%), Positives = 160/343 (46%), Gaps = 16/343 (4%)

Query: 176 TKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAAL 235
             QK    ++  E+  L+++    E  L + + +  S ++ +EE +R+     R+ +   
Sbjct: 663 LAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELK 722

Query: 236 EKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAA 295
            + A ++E   +   + E++  E     L E EEE++E   ++E  E+ L +L   L   
Sbjct: 723 RELAALEEELEQLQSRLEELEEE-----LEELEEELEELQERLEELEEELESLEEALAKL 777

Query: 296 ESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERF 355
           + ++   E +  + + E +EL E+LE    +  + ERE   +EQ +  LEQ+ +   E  
Sbjct: 778 KEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEI 837

Query: 356 EEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLE 415
           EE++E+    E+E ++  +  +  + E       K E E+        ++ ++ + E LE
Sbjct: 838 EELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDE-------LKELEEEKEELE 890

Query: 416 RQKTDLTNEVNRIRESELEALSKVALLEARVEEREKEIESLLESNNEQRAST----VKKL 471
            +  +L +E+  ++E   +   ++  LEA++E  E E+  L E   E+   T    +++ 
Sbjct: 891 EELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELERE 950

Query: 472 EDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQELTKAR 514
            + LE E  +    N  A     EV+    +L   +++L +A+
Sbjct: 951 IERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAK 993

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 67.4 bits (165), Expect = 2e-11
 Identities = 72/351 (20%), Positives = 146/351 (41%), Gaps = 11/351 (3%)

Query: 187 SEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTS 246
           + +   K R   AE +L    E     ++ +EE +++     R+A+ A     +  E   
Sbjct: 165 AGVSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRE 224

Query: 247 KEMQQREDVLR------EEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMR 300
            E+      L+      EE    L+  EEE++E   ++E AE+ +  L+ EL+    ++ 
Sbjct: 225 LELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELE 284

Query: 301 SYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQE 360
             + E+   K E +EL  ++  +  + +  E E   +E+    L++K ++  E  EE + 
Sbjct: 285 ELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERET 344

Query: 361 RCKVAEKEAKKATELADRERAEAAAARKG----KSEFENLAMERMAVIERVQRQIESLER 416
             +  E+   +  E  +    + +A  +              E  A +  ++ ++E L+R
Sbjct: 345 LLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKR 404

Query: 417 QKTDLTNEVNRIRESELEALSKVALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLE 476
           +   L   + R+ E   +   ++  LEA +EE + E+E L E   E      +  + L E
Sbjct: 405 EIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKE 464

Query: 477 SERRSRAAANAMAERLSLEVQSAQAKLDEMQQELTKARLNETALGSKLRAV 527
            ER        +      E+ S +A+LD ++ E   ++     L +    +
Sbjct: 465 LERELAELQEELQRLEK-ELSSLEARLDRLEAEQRASQGVRAVLEALESGL 514

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 67.0 bits (164), Expect = 2e-11
 Identities = 77/341 (22%), Positives = 148/341 (43%), Gaps = 14/341 (4%)

Query: 142 ENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEA 201
           E   L E+ + L   ++ L+ E+   K +   +    + +  Q+  E+E          A
Sbjct: 668 ELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQL-EELERQLEELKRELA 726

Query: 202 RLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFS 261
            L    EQ  S  EE+EE   +    + E +  LE+     E   + + + ++ + EE  
Sbjct: 727 ALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEI-EELE 785

Query: 262 STLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLE 321
                 +EE++E   ++E AE+ L  L  EL++ E +    E EI   + E +EL EKL+
Sbjct: 786 EKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLD 845

Query: 322 AVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERA 381
            +  + +  E+E   ++++   LE + +   +  +E++E  +  E+E ++         +
Sbjct: 846 ELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELREL-------ES 898

Query: 382 EAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTD-----LTNEVNRIRESELEAL 436
           E A  ++   +      E  A +ER++ ++  LE +  +     L  E+ R  E   E +
Sbjct: 899 ELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEI 958

Query: 437 SKVALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLES 477
             +  +  R  E  +E+E   E    QR    +  E LLE 
Sbjct: 959 EALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEV 999

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 63.9 bits (156), Expect = 2e-10
 Identities = 81/343 (23%), Positives = 147/343 (42%), Gaps = 25/343 (7%)

Query: 192 LKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQ 251
            K R    E +L   RE     ++ + E +R+     R+A+ A     +  E    E+  
Sbjct: 170 YKERRKETERKLERTRENLDRLEDILNELERQLKSLERQAEKAERYKELKAELRELELAL 229

Query: 252 REDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKL 311
               L E          EE++E   +++ AE+ L  L  EL+  E K+    +E+S  + 
Sbjct: 230 LVLRLEE--------LREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEE 281

Query: 312 ETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKK 371
           E +EL ++L A+  +    E++ +I+ +    LE++ +    + EE++ +     +E  +
Sbjct: 282 EIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAE 341

Query: 372 -------ATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNE 424
                    E  +   AE         E E+   E    +E ++ ++  LE Q   L NE
Sbjct: 342 LEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNE 401

Query: 425 VNRIRESELEALSKVALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAA 484
           + R+ E+ LE       LE R E  ++EIE LL+   E     +K+L+  LE        
Sbjct: 402 IERL-EARLER------LEDRRERLQQEIEELLKKLEEAE---LKELQAELEELEEELEE 451

Query: 485 ANAMAERLSLEVQSAQAKLDEMQQELTKARLNETALGSKLRAV 527
                ERL   ++  + +L+E +Q L  A      L ++L ++
Sbjct: 452 LQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSL 494

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 63.5 bits (155), Expect = 2e-10
 Identities = 59/276 (21%), Positives = 122/276 (44%), Gaps = 12/276 (4%)

Query: 188 EIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSK 247
           +IE L+ +    E  LA  R++    +EE+E+ +++     R+  A  +  A ++    +
Sbjct: 685 KIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQ 744

Query: 248 EMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEIS 307
             ++   + +E     L E E E++E   ++E AE+       EL  AE+++   E +I 
Sbjct: 745 LEERIAQLSKE-----LTELEAEIEELEERLEEAEE-------ELAEAEAEIEELEAQIE 792

Query: 308 SQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEK 367
             K E K L E L+ + A+      EA  + +    LE++  +   R E+++E+ +   +
Sbjct: 793 QLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSE 852

Query: 368 EAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNR 427
           + +      +                 N        +  ++ ++E L  +  +L ++ + 
Sbjct: 853 DIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSE 912

Query: 428 IRESELEALSKVALLEARVEEREKEIESLLESNNEQ 463
           +R    E   K+A LE R+E  E  I++L E  +E+
Sbjct: 913 LRRELEELREKLAQLELRLEGLEVRIDNLQERLSEE 948

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 61.2 bits (149), Expect = 1e-09
 Identities = 55/264 (20%), Positives = 115/264 (43%), Gaps = 13/264 (4%)

Query: 270 EMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQS 329
            ++E   ++E  ++ L     EL+   ++++  E ++   +LE  EL E++E +  +  +
Sbjct: 233 RLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYA 292

Query: 330 FEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKG 389
              E   +EQ K  L ++  +   + EE++ +  + E E+K      D    E A   + 
Sbjct: 293 LANEISRLEQQKQILRERLANLERQLEELEAQ--LEELESKL-----DELAEELAELEEK 345

Query: 390 KSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKVALLEARVEER 449
             E +       A +E ++ ++E LE +  +L  ++  +R    +   ++A L   +E  
Sbjct: 346 LEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERL 405

Query: 450 EKEIESLLESNNEQRASTVKKLEDLLESERRSRAAA-----NAMAERLSLEVQSAQAKLD 504
           E  +E  LE   E+    +++L   LE        A         E L  E++  +  L+
Sbjct: 406 EARLER-LEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALE 464

Query: 505 EMQQELTKARLNETALGSKLRAVS 528
           E+++EL +A     A   +L  + 
Sbjct: 465 ELREELEEAEQALDAAERELAQLQ 488

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 59.0 bits (143), Expect = 7e-09
 Identities = 68/315 (21%), Positives = 137/315 (43%), Gaps = 11/315 (3%)

Query: 93  IEDNMKLLKKQLEDSERYK--SEYLKRYDDA-----INDKKKLADDYTSRINNLQGENIS 145
           +E  ++ L++Q E +ERY+     L+  + A     + + +K  ++    ++ L+ E   
Sbjct: 198 LEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEELEEELSRLEEELEE 257

Query: 146 LREKSSSLSKTVDSLKNEISDWKRKYDQV---LTKQKAMEDQVCSEIEVLKSRSTAAEAR 202
           L+E+     K ++ LK+E+ + + + +++   L + K   +++  EI +L+ R    E  
Sbjct: 258 LQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENE 317

Query: 203 LAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSS 262
           L    E+    +E++E  K +           LE+     E   +E++++   L EE   
Sbjct: 318 LEELEERLEELKEKIEALKEELE-ERETLLEELEQLLAELEEAKEELEEKLSALLEELEE 376

Query: 263 TLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEA 322
                 EE+ E   ++      L  L+ E+++ E ++      +   K E KEL  +LE 
Sbjct: 377 LFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEE 436

Query: 323 VNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAE 382
           +  + +    E   +E+    L  + K       E+QE  +  EKE        DR  AE
Sbjct: 437 LQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAE 496

Query: 383 AAAARKGKSEFENLA 397
             A++  ++  E L 
Sbjct: 497 QRASQGVRAVLEALE 511

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 58.1 bits (141), Expect = 1e-08
 Identities = 64/316 (20%), Positives = 125/316 (39%), Gaps = 17/316 (5%)

Query: 91  RSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKK--LADDYTSRINNLQGENISLRE 148
             +E  +K L++Q E +ERY     K     + + +   L          L+     L+E
Sbjct: 196 NELERQLKSLERQAEKAERY-----KELKAELRELELALLVLRLEELREELEELQEELKE 250

Query: 149 KSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQ------VCSEIEVLKSRSTAAEAR 202
               L +    L+      +    +V   ++ +E+       + +EI  L+ +      R
Sbjct: 251 AEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRER 310

Query: 203 LAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTS--KEMQQREDVLREEF 260
           LA    Q    + ++EE + K      E     EK   ++E     +   +  +   EE 
Sbjct: 311 LANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEEL 370

Query: 261 SSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKL 320
            S L E EE+++   +K+   E  + +L  E++  E+++   E      + E +EL +KL
Sbjct: 371 ESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKL 430

Query: 321 EAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRER 380
           E    K    E E    E ++  L+++ +   E  EE++E  + AE+    A     + +
Sbjct: 431 EEAELKELQAELEELEEELEE--LQEELERLEEALEELREELEEAEQALDAAERELAQLQ 488

Query: 381 AEAAAARKGKSEFENL 396
           A   +  + +   E  
Sbjct: 489 ARLDSLERLQENLEGF 504

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 58.1 bits (141), Expect = 1e-08
 Identities = 67/370 (18%), Positives = 155/370 (41%), Gaps = 46/370 (12%)

Query: 93   IEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSS 152
            +E+ +  L+K L +      + L+  ++ +   +K  ++ + +I+ L+ +   L  +   
Sbjct: 689  LEEKIAELEKALAELR----KELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQ 744

Query: 153  LSKTVDSLKNEISDW---KRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQ 209
            L + +  L  E+++      + ++ L + +    +  +EIE L+++    +  L A RE 
Sbjct: 745  LEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREA 804

Query: 210  ALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEE 269
                + E+     +    +RE   +LE+     ER  ++++++           + E  E
Sbjct: 805  LDELRAELTLLNEEAA-NLRERLESLERRIAATERRLEDLEEQ-----------IEELSE 852

Query: 270  EMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQS 329
            +++  A +IE  E+ +  L  EL+A  ++  S E  ++  + E +ELSE+L         
Sbjct: 853  DIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRE------- 905

Query: 330  FEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKG 389
                   +E  +  L ++ +   E+  +++ R +  E        L +R   E       
Sbjct: 906  -------LESKRSELRRELEELREKLAQLELRLEGLEVRID---NLQERLSEE------- 948

Query: 390  KSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKVALLEARVEER 449
               +     E  A+  +++   E   R+   L N++  +    L A+ +   L+ R +  
Sbjct: 949  ---YSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKERYDFL 1005

Query: 450  EKEIESLLES 459
              + E L E+
Sbjct: 1006 TAQKEDLTEA 1015

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 54.7 bits (132), Expect = 1e-07
 Identities = 57/341 (16%), Positives = 140/341 (41%), Gaps = 22/341 (6%)

Query: 95  DNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLS 154
             ++   ++LE+  +     L+  +D + + ++  ++   ++  L+ E  +L E+   L 
Sbjct: 677 AELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQ 736

Query: 155 KTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQ 214
             ++ L+ E+ + + + +++  + + +E+++   +E   ++       L   R+      
Sbjct: 737 SRLEELEEELEELEEELEELQERLEELEEEL-ESLEEALAKLKEEIEELEEKRQALQEEL 795

Query: 215 EEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEM----QQREDVLREEFSSTLAEKEEE 270
           EE+EE   +    +   +  LE     +ER  +E+    ++ E++  +        +E E
Sbjct: 796 EELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELE 855

Query: 271 MKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSF 330
            + +             L+ EL+  E++    E E+   + E +EL E+L  + ++    
Sbjct: 856 KELEE------------LKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAEL 903

Query: 331 EREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGK 390
           + E   + +    LE K +       E++E  ++ E+         +RE        +  
Sbjct: 904 KEEIEKLRERLEELEAKLERLEVELPELEE--ELEEEYEDTLETELEREIERLEEEIEAL 961

Query: 391 SEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRES 431
                 A+E     E V+ + E L+ Q+ DL     ++ E 
Sbjct: 962 GPVNLRAIEE---YEEVEERYEELKSQREDLEEAKEKLLEV 999

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 52.4 bits (126), Expect = 7e-07
 Identities = 63/323 (19%), Positives = 134/323 (41%), Gaps = 23/323 (7%)

Query: 229 REAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTL 288
           R+ + ALE+   V+E   + +    D  R++      E+E+  + +A   E  E     L
Sbjct: 170 RKKEKALEELEEVEEN-IERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYEL 228

Query: 289 RLELKAAESKMRSYEVEISSQKLE----TKELSEKLEAVNAKAQSFEREARIMEQDKVYL 344
             E +A E +  + E +++S + E    T+E+SE  + +    Q  E   + ++      
Sbjct: 229 LKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEE 288

Query: 345 EQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVI 404
           + + K +    E      + +  E ++  E A+          K ++E + L  E    I
Sbjct: 289 QLRVKEKIGELEAEIASLERSIAEKERELEDAEERL------AKLEAEIDKLLAE----I 338

Query: 405 ERVQRQIESLERQKTDLTNEVNRIRE------SELEALSK-VALLEARVEEREKEIESLL 457
           E ++R+IE   +++  LT E   ++E      +ELE + K  A     +++  +++E L 
Sbjct: 339 EELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLK 398

Query: 458 ESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQELTKARLNE 517
              NE +   + +L++ L+      A  NA    +  ++   + + ++   E+ K     
Sbjct: 399 REINELK-RELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKL 457

Query: 518 TALGSKLRAVSHGKRARADDYEA 540
             L + L           ++Y+ 
Sbjct: 458 EQLAADLSKYEQELYDLKEEYDR 480

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 52.3 bits (126), Expect = 7e-07
 Identities = 84/429 (19%), Positives = 167/429 (38%), Gaps = 22/429 (5%)

Query: 100 LKKQLEDSERYKSEYLKRYD---DAINDKKKLADDYTSRINNLQGENISLREKSSSLSKT 156
           L+ ++ED     +E  +  +   + + D ++  ++     ++L  E       + ++   
Sbjct: 256 LEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEAR 315

Query: 157 VDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEE 216
            + L++   + + + ++     +A       E E L+  +   E R    RE+A   + E
Sbjct: 316 REELEDRDEELRDRLEECRVAAQAHN----EEAESLREDADDLEERAEELREEAAELESE 371

Query: 217 VEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDV--LREEFSSTLAEKEEEMKEK 274
           +EE +        E +   E+   ++ER         +     EE      E  E   E 
Sbjct: 372 LEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAEL 431

Query: 275 ATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREA 334
              +  A + +      L+A +       VE S      +E  E++E + A+ +  E E 
Sbjct: 432 EATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEV 491

Query: 335 RIMEQDKVYLEQKYKSEFERFEEVQERCKVAEK--EAKKATELADRERAEAAAARKGKSE 392
             +E+     E   ++E +R E ++ER +  E+    ++ T    RERAE    R  + E
Sbjct: 492 EEVEERLERAEDLVEAE-DRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELE 550

Query: 393 FE-----NLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKVALLEARVE 447
            E       A E     E  + ++  L  +  +L   +  +       L+ +A  E  +E
Sbjct: 551 AEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIR-TLLAAIADAEDEIE 609

Query: 448 EREKEIESLLESNNEQRASTVKKLE--DLLESERRSRAAANAMAERLSLEVQSAQAKLDE 505
              ++ E+L E N+E+R    +K E    LE+E        A  ++   E      +++E
Sbjct: 610 RLREKREALAELNDERRERLAEKRERKRELEAEFDEARIEEAREDKERAE--EYLEQVEE 667

Query: 506 MQQELTKAR 514
              EL + R
Sbjct: 668 KLDELREER 676

Length = 880

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 51.7 bits (123), Expect = 1e-06
 Identities = 88/392 (22%), Positives = 172/392 (43%), Gaps = 28/392 (7%)

Query: 165  SDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKY 224
            ++ K+K D+   K+KA E +   E    K ++  A+ +  AA+++A  A++  E  K + 
Sbjct: 1298 AEEKKKADEA--KKKAEEAKKADE---AKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEA 1352

Query: 225  GVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAE----KEEEMKEKATKIEH 280
              A  EA+AA EKA   +++  +  ++ +   ++      A+    K EE K+KA +++ 
Sbjct: 1353 EAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKK 1412

Query: 281  AEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFER---EARIM 337
            A           K AE K ++ E +  +++ +  + ++K      KA+  ++   EA+  
Sbjct: 1413 AAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKA 1472

Query: 338  EQDKVYLEQKYKSE-----FERFEEVQERCKVAEKEAKKATELADRERA----EAAAARK 388
            ++ K   E+  K++      E  ++  +  K A +  KKA E    E A    EA  A +
Sbjct: 1473 DEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEE 1532

Query: 389  GKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKVALLEARVEE 448
             K   E    E     + +++  E  + ++     E  +  E +  AL K    +   E 
Sbjct: 1533 AKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEA 1592

Query: 449  REKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQ 508
            R +E+  L E   + +A   KK       E + +A     AE    +V+  + K  E ++
Sbjct: 1593 RIEEVMKLYEEEKKMKAEEAKK-----AEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKK 1647

Query: 509  ELTKARLNETALGSKLRAVSHGKRARADDYEA 540
            +  + +  E    +K++A    K+A  D  +A
Sbjct: 1648 KAEELKKAEEE--NKIKAAEEAKKAEEDKKKA 1677

Length = 2084

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 51.3 bits (123), Expect = 2e-06
 Identities = 73/351 (20%), Positives = 144/351 (41%), Gaps = 26/351 (7%)

Query: 164 ISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRK 223
           +S +K + ++   K +  E+     +E L         +L    E+A   QE   E +  
Sbjct: 167 VSKYKERKEEAERKLERTEEN-LERLEDLLEELEKQLEKLERQAEKAERYQELKAELREL 225

Query: 224 YG-------VAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKAT 276
                      +R+    LE+     E   +E+Q+      EE    + E + E++E   
Sbjct: 226 ELALLLAKLKELRKELEELEEELSRLEEELEELQEE----LEEAEKEIEELKSELEELRE 281

Query: 277 KIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARI 336
           ++E  ++ L  L+ E++  E ++      +   + E +EL E+LE +  K ++ + E   
Sbjct: 282 ELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEE 341

Query: 337 MEQDKVYLEQKYKSEFERFEEVQERCKVAEKE-----AKKATELADRERAEAAAARKG-- 389
            E     LEQ      E  EE++E+     +E          ELA+ E   A    +   
Sbjct: 342 RETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEE 401

Query: 390 -KSEFENLAMER---MAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKVALLEAR 445
            K E E+L          +E ++ +++ LE +  +L  E+  + E   E   ++  L  R
Sbjct: 402 LKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDR 461

Query: 446 VEEREKE---IESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLS 493
           ++E E+E   ++  L+   ++ +S   +L+ L   +R S+     +    S
Sbjct: 462 LKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEALES 512

Length = 1163

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 51.3 bits (123), Expect = 2e-06
 Identities = 76/464 (16%), Positives = 170/464 (36%), Gaps = 36/464 (7%)

Query: 80  GSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNL 139
           G     L      +E   + LK+  +  E  + +  +  +  I   ++   +       L
Sbjct: 192 GQLSELLEDIEDLLEALEEELKELKKLEEIQEEQEEEELEQEIEALEERLAELEEEKERL 251

Query: 140 QGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRS--- 196
           +     L E  S   + +   + E+ + +R  +++  K + +E+    EIE L+      
Sbjct: 252 EELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELE-REIEELEEELEGL 310

Query: 197 TAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVL 256
            A    L    E+  S +E +E+ + K      + ++ LE+ A  +   +K +++R   L
Sbjct: 311 RALLEELEELLEKLKSLEERLEKLEEKL----EKLESELEELAEEKNELAKLLEERLKEL 366

Query: 257 REEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKEL 316
            E       E E+ ++      E  ++       EL    + +   + E+   + E +EL
Sbjct: 367 EERLEELEKELEKALERLKQLEEAIQELKE----ELAELSAALEEIQEELEELEKELEEL 422

Query: 317 SEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKE-----AKK 371
             +LE +  + +  E +   +E  ++ + +             E+C V  +E      K+
Sbjct: 423 ERELEELEEEIKKLEEQINQLESKELMIAE--------LAGAGEKCPVCGQELPEEHEKE 474

Query: 372 ATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRES 431
             EL + E  E       + E   L  E   + + ++   E L             + E 
Sbjct: 475 LLELYELELEELEEELSREKEEAELREEIEELEKELRELEEELIELLELEEALKEELEEK 534

Query: 432 ELEALSKVALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAER 491
             +  + +  LE   E+ + +         E R   +K+L + L   R  +         
Sbjct: 535 LEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKE-------- 586

Query: 492 LSLEVQSAQAKLDEMQQELTKARLNETALGSKLRAVSHGKRARA 535
              E++  + +L E++++L +     + L   L+++   +    
Sbjct: 587 ---ELEELRERLKELKKKLKELEERLSQLEELLQSLELSEAENE 627

Length = 908

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 50.1 bits (120), Expect = 4e-06
 Identities = 57/304 (18%), Positives = 118/304 (38%), Gaps = 50/304 (16%)

Query: 257 REEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKEL 316
             + +S++ E+  E++E   KIE  E+ +  L   L     ++   E E+   + E +EL
Sbjct: 665 SAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEEL 724

Query: 317 SEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELA 376
           S ++ A+       E E   +E+    L ++                + E EA+      
Sbjct: 725 SRQISALRKDLARLEAEVEQLEERIAQLSKE----------------LTELEAEIEELEE 768

Query: 377 DRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEAL 436
             E AE   A   ++E E L     A IE+++ ++++L     +L  E+  + E      
Sbjct: 769 RLEEAEEELAE-AEAEIEELE----AQIEQLKEELKALREALDELRAELTLLNEEAANLR 823

Query: 437 SKVALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEV 496
            ++  LE R+   E+ +E L E                               E LS ++
Sbjct: 824 ERLESLERRIAATERRLEDLEEQ-----------------------------IEELSEDI 854

Query: 497 QSAQAKLDEMQQELTKARLNETALGSKLRAVSHGKRARADDYEAGVGSVQEMDTNDKVLR 556
           +S  A+++E+++ + +      AL ++  ++         + E     ++E+++    LR
Sbjct: 855 ESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELR 914

Query: 557 ANKR 560
               
Sbjct: 915 RELE 918

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 49.8 bits (118), Expect = 5e-06
 Identities = 59/258 (22%), Positives = 109/258 (42%), Gaps = 6/258 (2%)

Query: 168  KRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVA 227
            K+K D++   +KA E +   E +  +    A E +  A R+   + + E    +    + 
Sbjct: 1545 KKKADEL---KKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLY 1601

Query: 228  VREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTT 287
              E K   E+A   +E   K  + ++    ++    L +KE E K+KA +++ AE+    
Sbjct: 1602 EEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKI 1661

Query: 288  LRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQK 347
               E      + +    E    + + K+ +E L+    +A+  E   +   ++K   E+ 
Sbjct: 1662 KAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEEL 1721

Query: 348  YKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSE---FENLAMERMAVI 404
             K+E E   + +E  K AE++ KKA E    E  +   A   K E    E +  E+ AVI
Sbjct: 1722 KKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVI 1781

Query: 405  ERVQRQIESLERQKTDLT 422
            E    + +   R + D  
Sbjct: 1782 EEELDEEDEKRRMEVDKK 1799

Length = 2084

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 49.3 bits (118), Expect = 5e-06
 Identities = 109/461 (23%), Positives = 189/461 (40%), Gaps = 70/461 (15%)

Query: 76  IDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYK--SEYLKRYDDAINDKKKLADDYT 133
           I ++      L  +   +E+ +K LK+  E +E Y   SE+ + Y D + + +K      
Sbjct: 261 IRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLE 320

Query: 134 SRINNLQGENISLREKSSSLSKTVDSLK------NEISDWKRKYDQVLTKQKAME----- 182
             IN ++     L EK   L +    LK       E+ +    Y++   K++ +E     
Sbjct: 321 EEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKR 380

Query: 183 ------DQVCSEIEVLKSRSTAAE----------ARLAAAREQALSAQEEVEEWKRKYGV 226
                 +++  E+E L+      E            L    ++   A EE+++ K K  V
Sbjct: 381 LTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPV 440

Query: 227 AVRE-----AKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHA 281
             RE      K  LE+     +R  KE+++ E+  R+        KE    EK  K E  
Sbjct: 441 CGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERK------LRKELRELEKVLKKESE 494

Query: 282 EQCLTTLRLELKAAESKMRSYEVE------------------ISSQKLETKELSEKLEAV 323
              L  L  +LK  E K++ Y +E                  +  +    K+  EKLE +
Sbjct: 495 LIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEEL 554

Query: 324 NAKAQSFEREARIMEQDKVYLEQKYKSE-FERFEEVQERCKVAEKEAKKATELADRERAE 382
             K    E++   +E++   L ++ +   FE  EE++ER K  E    +  EL D E+  
Sbjct: 555 KKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKEL 614

Query: 383 AAAARKGKSEFENLAM------ERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEAL 436
               ++ K   E L        E    +E +++++E LE++ ++   E   +RE  LE  
Sbjct: 615 EREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYE--ELREEYLELS 672

Query: 437 SKVALLEARVEEREK---EIESLLESNNEQRASTVKKLEDL 474
            ++A L A +EE EK   EI+  LE   E+     K  ++L
Sbjct: 673 RELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKEL 713

Length = 880

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 49.3 bits (118), Expect = 7e-06
 Identities = 45/270 (16%), Positives = 126/270 (46%), Gaps = 14/270 (5%)

Query: 76  IDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSR 135
           ++++  E      +   +   ++ L+++LE+     SE     ++ I + +K      + 
Sbjct: 241 LEELQEELKEAEEELEELTAELQELEEKLEELRLEVSEL----EEEIEELQKELYALANE 296

Query: 136 INNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCS-------- 187
           I+ L+ +   LRE+ ++L + ++ L+ ++ + + K D++  +   +E+++          
Sbjct: 297 ISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESL 356

Query: 188 --EIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERT 245
             E+E L++     E+RL    EQ  + + +V + + +      E +    +   +++R 
Sbjct: 357 EAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRR 416

Query: 246 SKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVE 305
            +  Q+ E++L++   + L E + E++E   ++E  ++ L  L   L+    ++   E  
Sbjct: 417 ERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQA 476

Query: 306 ISSQKLETKELSEKLEAVNAKAQSFEREAR 335
           + + + E  +L  +L+++    ++ E  + 
Sbjct: 477 LDAAERELAQLQARLDSLERLQENLEGFSE 506

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 48.1 bits (115), Expect = 1e-05
 Identities = 53/334 (15%), Positives = 131/334 (39%), Gaps = 17/334 (5%)

Query: 130 DDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEI 189
            ++  +      E   + E    L   +D  + ++   +R+ ++    Q  ++++   E 
Sbjct: 166 AEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEG 225

Query: 190 EVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEM 249
             L     A E +  A   Q  S +EE+E+   +     +  +   +    + ++     
Sbjct: 226 YELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLG 285

Query: 250 QQREDVLREEFSS----------TLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKM 299
           ++ +  ++E+             ++AEKE E+++   ++   E  +  L  E++  E ++
Sbjct: 286 EEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREI 345

Query: 300 RSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQ 359
                       E  EL E+LE + A+ +  ++E      +     +K +       E++
Sbjct: 346 EEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELK 405

Query: 360 ERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESL----- 414
                 ++E ++ +E      A  A      +E E    ++   I++ + ++E L     
Sbjct: 406 RELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLS 465

Query: 415 --ERQKTDLTNEVNRIRESELEALSKVALLEARV 446
             E++  DL  E +R+ +   +   ++A  EA+ 
Sbjct: 466 KYEQELYDLKEEYDRVEKELSKLQRELAEAEAQA 499

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 47.8 bits (114), Expect = 2e-05
 Identities = 51/287 (17%), Positives = 124/287 (43%), Gaps = 21/287 (7%)

Query: 176 TKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAAL 235
             + A   ++   +E LK   ++ ++ L     +     +E+ +  RK G   +E +   
Sbjct: 670 RSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLE 729

Query: 236 EKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAA 295
           ++   ++ER  +E+++    L +E    +   + E+KE   +IE  E+ L  L   L   
Sbjct: 730 QEEEKLKERL-EELEEDLSSLEQE----IENVKSELKELEARIEELEEDLHKLEEALNDL 784

Query: 296 ESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERF 355
           E+++    +     +L   +L E++  + A+ +  E++   +  +K YLE++ +   E+ 
Sbjct: 785 EARLSHSRIPEIQAELS--KLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQR 842

Query: 356 EEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLE 415
            +++E+                    E       K E E    E  A +  ++ ++  L+
Sbjct: 843 IDLKEQ--------------IKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLK 888

Query: 416 RQKTDLTNEVNRIRESELEALSKVALLEARVEEREKEIESLLESNNE 462
           +++ +L  ++  +     E  +++     R+ E + ++E+L E  +E
Sbjct: 889 KERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSE 935

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 45.4 bits (108), Expect = 9e-05
 Identities = 64/367 (17%), Positives = 155/367 (42%), Gaps = 25/367 (6%)

Query: 109  RYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWK 168
            R +   L+R  + +   K+      S +  ++     L ++ S  S+ +  ++ EI   +
Sbjct: 670  RSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLE 729

Query: 169  RKYDQVLTKQKAMEDQVCS---EIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYG 225
            ++ +++  + + +E+ + S   EIE +KS     EAR+    E     +E + + + +  
Sbjct: 730  QEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLS 789

Query: 226  VA-VREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEK--EEEMKEKATKIEHAE 282
             + + E +A L K   ++E  S+   +  ++ ++    TL ++  E+E++E   +    +
Sbjct: 790  HSRIPEIQAELSK---LEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLK 846

Query: 283  QCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKV 342
            + + ++  E++    K    E E+   +   ++L  +L  +  +    E + R +E+   
Sbjct: 847  EQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIE 906

Query: 343  YLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMER-- 400
             LE + + + +R  E++           K   L +          + +   E        
Sbjct: 907  ELEAQIEKKRKRLSELKA----------KLEALEEELSEIEDPKGEDEEIPEEELSLEDV 956

Query: 401  MAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKVALLEARVEEREKEIESLLESN 460
             A ++RV+ +I +LE     +     +  E  L+ L ++    A++EE  K I   +E  
Sbjct: 957  QAELQRVEEEIRALE----PVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEY 1012

Query: 461  NEQRAST 467
             +++   
Sbjct: 1013 EKKKREV 1019

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 45.4 bits (108), Expect = 1e-04
 Identities = 86/375 (22%), Positives = 161/375 (42%), Gaps = 45/375 (12%)

Query: 62   QSSEGPILDLVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDA 121
              SE   L  ++  ++ +  E SSL  + R IE+ +  L ++L D+ R   E  K     
Sbjct: 669  SRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEK----- 723

Query: 122  INDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAM 181
                          I  L+ E   L+E+   L + + SL+ EI + K +  ++  + + +
Sbjct: 724  -------------EIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEEL 770

Query: 182  EDQVCSEIEVLKSRSTAAEARLAAAREQALSAQ-EEVEEWKRKYGVAVREAKAALEKAAI 240
            E+     +  L+      EARL+ +R   + A+  ++EE   +    +RE +  L +  +
Sbjct: 771  EED----LHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTL 826

Query: 241  VQERTSKEMQQREDVLR-------------EEFSSTLAEKEEEMKEKATKIEHAEQCLTT 287
             +E   KE+Q+ ++                E  +    E EEE++E    +   E  L  
Sbjct: 827  EKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGD 886

Query: 288  LRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQK 347
            L+ E    E+++R  E +I   + + ++  ++L  + AK ++ E E   +E D    +++
Sbjct: 887  LKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIE-DPKGEDEE 945

Query: 348  YKSEFERFEEVQERCKVAEKEAKKATE---LADRERAEAAAARKG-KSEFENLAMERMAV 403
               E    E+VQ   +  E+E +       LA +E  E        K +   L  ER A+
Sbjct: 946  IPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAI 1005

Query: 404  IERVQRQIESLERQK 418
            +ER    IE  E++K
Sbjct: 1006 LER----IEEYEKKK 1016

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 45.4 bits (108), Expect = 1e-04
 Identities = 55/223 (24%), Positives = 94/223 (42%), Gaps = 11/223 (4%)

Query: 257 REEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKEL 316
           R+E    L E EE  +E    +E  E  +  LR  +   E +      E+   +   +EL
Sbjct: 236 RDEADEVLEEHEERREE----LETLEAEIEDLRETIAETEREREELAEEVRDLRERLEEL 291

Query: 317 SEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELA 376
            E+ + + A+A   + +A  +E  +  LE + +   +R EE +   +   +EA+   E A
Sbjct: 292 EEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDA 351

Query: 377 DRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEAL 436
           D     A   R+  +E E+   E    +E  + +IE LE +  +L             A 
Sbjct: 352 DDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAE 411

Query: 437 SKVALLEA---RVEEREKEIESLLESNNEQRASTVKKLEDLLE 476
             +  L      + ERE E+E+ L +  E     V++ E LLE
Sbjct: 412 DFLEELREERDELREREAELEATLRTARE----RVEEAEALLE 450

Length = 880

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 45.1 bits (107), Expect = 1e-04
 Identities = 78/488 (15%), Positives = 195/488 (39%), Gaps = 39/488 (7%)

Query: 87  MLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISL 146
           + +    ++ ++ LK +L + E  + E LK  ++ + + ++L ++   +I  L+     +
Sbjct: 241 LAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREI 300

Query: 147 REKSSSLSKTV------DSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAE 200
            E    L          + L  ++   + + +++  K + +E ++    E     +   E
Sbjct: 301 EELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLE 360

Query: 201 ARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEF 260
            RL    E+    ++E+E+   +    + EA   L++         +E+Q+  + L +E 
Sbjct: 361 ERLKELEERLEELEKELEKALERLK-QLEEAIQELKEELAELSAALEEIQEELEELEKEL 419

Query: 261 SS---TLAEKEEEMKEKATKIEHAEQ-----------------CLTTLRLELKAAESKMR 300
                 L E EEE+K+   +I   E                  C   L  E +    ++ 
Sbjct: 420 EELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQELPEEHEKELLELY 479

Query: 301 SYEVEISSQKL----ETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFE 356
             E+E   ++L    E  EL E++E +  + +  E E   + + +  L+++ + + E+ E
Sbjct: 480 ELELEELEEELSREKEEAELREEIEELEKELRELEEELIELLELEEALKEELEEKLEKLE 539

Query: 357 EVQERCKVAEKEAKKATELADRERAE--------AAAARKGKSEFENLAMERMAVIERVQ 408
            + E  +  +++ +      +  + E             +     +    E    ++ ++
Sbjct: 540 NLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKEELEELRERLKELK 599

Query: 409 RQIESLERQKTDLTNEVNRIRESELEALSKVALLEARVEEREKEIESLLESNNEQRASTV 468
           ++++ LE + + L   +  +  SE E   + A  E   E  +  +++ LE   +     +
Sbjct: 600 KKLKELEERLSQLEELLQSLELSEAENELEEAEEELESELEKLNLQAELEELLQAALEEL 659

Query: 469 KKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQELTKARLNETALGSKLRAVS 528
           ++  + LE+E R         E+L  +++  +   +E++Q   +       LG   + + 
Sbjct: 660 EEKVEELEAEIRRELQRIENEEQLEEKLEELEQLEEELEQLREELEELLKKLGEIEQLIE 719

Query: 529 HGKRARAD 536
             +  +A+
Sbjct: 720 ELESRKAE 727

Length = 908

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 44.3 bits (105), Expect = 2e-04
 Identities = 48/219 (21%), Positives = 89/219 (40%), Gaps = 3/219 (1%)

Query: 346 QKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAM-ERMAVI 404
           +K   E E  EE  ER  +   E ++  E   RER +A   +    E       E +   
Sbjct: 173 EKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEK 232

Query: 405 ERVQRQIESLERQKTDLTNEVNRIRESELEALSK-VALLEARVEEREKEIESLLESNNEQ 463
           E ++RQ E++ERQ   L  E+ ++   E+  L K +  +E  +EE  K+I+ L E    +
Sbjct: 233 EALERQKEAIERQLASLEEELEKL-TEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLR 291

Query: 464 RASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQELTKARLNETALGSK 523
               + +LE  + S  RS A      E     +   +A++D++  E+ +          +
Sbjct: 292 VKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKR 351

Query: 524 LRAVSHGKRARADDYEAGVGSVQEMDTNDKVLRANKRSR 562
              ++       ++ E     ++E+D      R   +  
Sbjct: 352 RDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDY 390

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)

 Score = 44.3 bits (105), Expect = 2e-04
 Identities = 71/367 (19%), Positives = 139/367 (37%), Gaps = 43/367 (11%)

Query: 180 AMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAA 239
           A E ++   ++  +    +A A+   A EQ + A  E+EE KR    A  EA+ AL++A 
Sbjct: 600 ANETELRERLQQAEEALQSAVAKQKQAEEQLVQANAELEEQKR----AEAEARTALKQAR 655

Query: 240 IVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKM 299
           +  +R   E Q  +D           + E  + E+  +   AE  L  L  +LK    + 
Sbjct: 656 LDLQRLQNEQQSLKD-----------KLELAIAERKQQ---AETQLRQLDAQLKQLLEQQ 701

Query: 300 RSYEVEISSQKLE-TKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEV 358
           +++   +     E   E   K + V       E + ++ +     +E        R +E+
Sbjct: 702 QAFLEALKDDFRELRTERLAKWQVVEG-----ELDNQLAQLSAA-IEAARTQAKARLKEL 755

Query: 359 QERCKVAEKEAKKATELADRERAEAAAARKGKSEFENL--AMERMAVIERVQRQIESLER 416
           ++         +   ELA  +  +    ++ K + E L   +ER+AV     R+  +  +
Sbjct: 756 KK---------QYDRELASLD-VDPNTVKELKRQIEELETTIERIAVRRPEVREYRAFMQ 805

Query: 417 Q---KTDLTNEVNRIRESELEAL-SKVALLEARVEEREKEIESLLESNNEQRASTVKKLE 472
           +     D   E       +L  L S    L+  +    K+ +   +   ++R +  K+L+
Sbjct: 806 ETWLHRDSLREERPNLAIQLRELESSAEELQQELTRLIKDTKLRRKKLEQERKALEKQLD 865

Query: 473 DLLESERRSRAAANAMAE-RLSLEVQSAQAKLDEMQQELTKARL-NETALGSKLRAVSHG 530
            L E  R  R     +AE +       A+  + E   +L + +   +   G   + +   
Sbjct: 866 QLDELLRGLRDEMRQLAELKEPANANQAEGSISERLDQLEEFKRKRKRLSGDLKKFLERF 925

Query: 531 KRARADD 537
                D 
Sbjct: 926 DGVIKDH 932

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication. Length = 1198

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 43.5 bits (103), Expect = 3e-04
 Identities = 40/180 (22%), Positives = 79/180 (43%), Gaps = 8/180 (4%)

Query: 374 ELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESEL 433
           EL ++  A    +R  +        E  A ++R++ ++E L+R+ + L +E+ RI     
Sbjct: 647 ELFEKSGAMTGGSRAPRGGILFSRSEP-AELQRLRERLEGLKRELSSLQSELRRIENRLD 705

Query: 434 EALSKVALLEARVEEREKEIESLLESNN------EQRASTVKKLEDLLESERRSRAAANA 487
           E   +++    ++ E EKEIE L +         E+    +  LE  +E+ +       A
Sbjct: 706 ELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEA 765

Query: 488 MAERLSLEVQSAQAKLDEMQQELTKARLNE-TALGSKLRAVSHGKRARADDYEAGVGSVQ 546
             E L  ++   +  L++++  L+ +R+ E  A  SKL        AR  + E  +  + 
Sbjct: 766 RIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLT 825

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 43.1 bits (102), Expect = 5e-04
 Identities = 57/360 (15%), Positives = 140/360 (38%), Gaps = 29/360 (8%)

Query: 88  LKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLR 147
           L        ++ L+++ E +ERY++   ++ +    +  K  +    +   ++ +  SL 
Sbjct: 191 LIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLE 250

Query: 148 EKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAR 207
           E+   L++ +  L+  + + ++  +++  K K + ++    ++       A  A L  + 
Sbjct: 251 EELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSI 310

Query: 208 EQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEK 267
            +     E+ EE   K    + +  A +E+         +   + E   R++ +   AE 
Sbjct: 311 AEKERELEDAEERLAKLEAEIDKLLAEIEE--------LEREIEEERKRRDKLTEEYAEL 362

Query: 268 EEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKA 327
           +EE+++   ++E  ++     R ELK    K+   + EI+  K E   L E+L+ ++ + 
Sbjct: 363 KEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEEL 422

Query: 328 QSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAAR 387
                    +E     LE       E  E+     K  E + ++      +   E    +
Sbjct: 423 ADLNAAIAGIEAKINELE-------EEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLK 475

Query: 388 KGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKVALLEARVE 447
                            +RV++++  L+R+  +   +     E      +   +L+A ++
Sbjct: 476 --------------EEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQ 521

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 43.2 bits (101), Expect = 5e-04
 Identities = 84/441 (19%), Positives = 186/441 (42%), Gaps = 40/441 (9%)

Query: 102  KQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLK 161
            K+  D+ + K+E  K+  +A    K  A+         + +  +  +K     K  D+ K
Sbjct: 1328 KKKADAAKKKAEEAKKAAEA---AKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAK 1384

Query: 162  NEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWK 221
             +  + K+K D+   K+KA ED+  ++ E+ K+ +   +A  A  + +     +E ++  
Sbjct: 1385 KKAEE-KKKADEA--KKKAEEDKKKAD-ELKKAAAAKKKADEAKKKAEEKKKADEAKKKA 1440

Query: 222  RKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHA 281
             +   A    K A E     + +   E  ++ D  +++     A+K +E K+KA   E A
Sbjct: 1441 EEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEE--AKKADEAKKKA---EEA 1495

Query: 282  EQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDK 341
            ++     +   KAAE+K ++ E + + +  +  E  +  EA  A       E +  ++ K
Sbjct: 1496 KKKADEAK---KAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELK 1552

Query: 342  VYLEQKYKSEFERFEEVQ-------------ERCKVAEKEAKKATELADRERAEAAAARK 388
               E K   E ++ EE +             E  K AE+   +       E  +  A   
Sbjct: 1553 KAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEA 1612

Query: 389  GKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKVALLEARVEE 448
             K+E   +  E +   E  ++++E L++++ +   +   ++++E E   K A    + EE
Sbjct: 1613 KKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEE 1672

Query: 449  REKEIESLLESNNEQR------------ASTVKKLEDLLESERRSRAAANAMAERLSLEV 496
             +K+ E   ++  +++            A   ++L+     E++         E   ++ 
Sbjct: 1673 DKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKA 1732

Query: 497  QSAQAKLDEMQQELTKARLNE 517
            + A+ + +E +++  +A+ +E
Sbjct: 1733 EEAKKEAEEDKKKAEEAKKDE 1753

Length = 2084

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 42.7 bits (101), Expect = 5e-04
 Identities = 88/440 (20%), Positives = 196/440 (44%), Gaps = 40/440 (9%)

Query: 89  KYRSIEDNMKLLKKQLEDSERYKSEYLKR---YDDAINDKKKLADDYTSRINNLQGENIS 145
            Y +   N+  + K+++       +++KR    ++ I +K+K  ++    IN +  E   
Sbjct: 159 DYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPE 218

Query: 146 LREKSSSLSK---TVDSLKNEISDWKRKYDQVLTKQKAMED---QVCSEIEVLKSRSTAA 199
           LRE+   L K    ++ LK EI + +++ + +   ++ +E+   ++   IE LK      
Sbjct: 219 LREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEEL 278

Query: 200 EARLAAAREQALSAQE--EVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLR 257
           E ++   +E    A+E  ++ E+  +Y   +RE +  L +         + +++ E+  +
Sbjct: 279 EEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEE--K 336

Query: 258 EEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELS 317
           EE    L +K +E++++  ++E   +       E KA + ++   +  ++    E  +L 
Sbjct: 337 EERLEELKKKLKELEKRLEELEERHELYE----EAKAKKEELERLKKRLTGLTPE--KLE 390

Query: 318 EKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELAD 377
           ++LE +    +  E E   +      L+++ K   +  EE+        K+AK    +  
Sbjct: 391 KELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEEL--------KKAKGKCPVCG 442

Query: 378 RERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRI-----RESE 432
           RE  E           + L  E  A ++R++++++ +E ++  L  E+  +     +ESE
Sbjct: 443 RELTE--------EHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESE 494

Query: 433 LEALSKVALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERL 492
           L  L ++A     +EE+ K+          +    +K+    L+ E +S        E L
Sbjct: 495 LIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEEL 554

Query: 493 SLEVQSAQAKLDEMQQELTK 512
             ++   + KLDE+++EL +
Sbjct: 555 KKKLAELEKKLDELEEELAE 574

Length = 880

>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function unknown]

 Score = 42.8 bits (101), Expect = 5e-04
 Identities = 44/190 (23%), Positives = 76/190 (40%), Gaps = 10/190 (5%)

Query: 227 AVREAKAALEKAAIVQERTSKEMQQREDVLREE----FSSTLAE------KEEEMKEKAT 276
           A  +A  A +      ER   E+   +DV R +        LAE      +EE  +EK  
Sbjct: 349 AAYKAYLAYKPKLEKVERKLPELGIWKDVERIKALVIRGYPLAEALSKVKEEERPREKEG 408

Query: 277 KIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARI 336
             E   + +T     +K  E  +   E E S  K E +EL  ++E + ++ + F RE R 
Sbjct: 409 TEEEERREITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRD 468

Query: 337 MEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENL 396
             +    +  + +      +E++E+ K  E+  +K  EL    + E +         E L
Sbjct: 469 KVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELRKMRKLELSGKGTPVKVVEKL 528

Query: 397 AMERMAVIER 406
            +E +   E 
Sbjct: 529 TLEAIEEAEE 538

Length = 652

>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated

 Score = 42.6 bits (101), Expect = 6e-04
 Identities = 43/272 (15%), Positives = 91/272 (33%), Gaps = 27/272 (9%)

Query: 212 SAQEEVEEWKRKYGVAVREA---KAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKE 268
            + E + + +             ++ L K   ++E   K   +  + L ++    L + E
Sbjct: 40  LSNERLRKLRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSVKSLEELIKDVEEELEKIE 99

Query: 269 EEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQ 328
           +E+KE   +I   E  +  L  E++  E    ++++++S   L   +    +        
Sbjct: 100 KEIKELEEEISELENEIKELEQEIERLE-PWGNFDLDLS--LLLGFKYV-SVFVGTVPED 155

Query: 329 SFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARK 388
             E      + + V         +     V  +    E   +   EL            +
Sbjct: 156 KLEELKLESDVENVEYI-STDKGYVYVVVVVLK----ELSDEVEEELKKLGFERLELEEE 210

Query: 389 GK-----SEFENLAMERMAVIERVQRQIESLERQKTDL---TNEVNRIRESELEALSK-- 438
           G       E +    E     E +  +++ L ++  +      E   I     EALSK  
Sbjct: 211 GTPSELIREIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLEIELERAEALSKFL 270

Query: 439 ----VALLEARV-EEREKEIESLLESNNEQRA 465
                  +E  V E+R K+++ L++      A
Sbjct: 271 KTDKTFAIEGWVPEDRVKKLKELIDKATGGSA 302

Length = 646

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 42.4 bits (100), Expect = 7e-04
 Identities = 53/281 (18%), Positives = 117/281 (41%), Gaps = 5/281 (1%)

Query: 188 EIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSK 247
            +E  +  S   +  +  A+ +    + ++ E        +   +  L++   ++E   +
Sbjct: 165 GLEKYEKLSELLKEVIKEAKAKIEELEGQLSELLEDIEDLLEALEEELKELKKLEEIQEE 224

Query: 248 EMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEIS 307
           + ++  +   E     LAE EEE +          +  +     LK  E ++R  E  + 
Sbjct: 225 QEEEELEQEIEALEERLAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLE 284

Query: 308 SQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEK 367
             + + + L E    +  + +      R + ++   L +K KS  ER E+++E+ +  E 
Sbjct: 285 ELEEKIERLEELEREI-EELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLES 343

Query: 368 E----AKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTN 423
           E    A++  ELA           +   E E    + +  +++++  I+ L+ +  +L+ 
Sbjct: 344 ELEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSA 403

Query: 424 EVNRIRESELEALSKVALLEARVEEREKEIESLLESNNEQR 464
            +  I+E   E   ++  LE  +EE E+EI+ L E  N+  
Sbjct: 404 ALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQLE 444

Length = 908

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 42.4 bits (100), Expect = 7e-04
 Identities = 106/488 (21%), Positives = 204/488 (41%), Gaps = 60/488 (12%)

Query: 73  KRLIDQIGSERSSLMLKYRSIEDNMKLLK------------------------KQLEDSE 108
            + ++++  E   L  +  S+E + + L+                        K+L++ +
Sbjct: 230 VKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELK 289

Query: 109 RYKSEYLK------RYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKN 162
               EY+K       Y D + + +K        IN ++     L EK   L +    LK 
Sbjct: 290 EKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEE----LKK 345

Query: 163 EISDWKRKYDQVLTKQKAMED--QVCSEIEVLKSRSTAAE-ARLAAAREQALSAQEEVEE 219
           ++ + +++ +++  + +  E+      E+E LK R T     +L    E+   A+EE+EE
Sbjct: 346 KLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEE 405

Query: 220 WKRKYGVAVREAKAALE--KAAIVQERTSKEM---------QQREDVLREEFSSTLAEKE 268
              K    + E K  ++  K AI + + +K           ++    L EE+++ L   E
Sbjct: 406 EISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIE 465

Query: 269 EEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQ 328
           +E+KE   K     + L  L   LK     ++  E+    ++LE K     LE +  KA+
Sbjct: 466 KELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAE 525

Query: 329 SFEREARIMEQDKVYLEQK-YKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAAR 387
            +E+     +  K+  E K  K E E+ EE++++    EK+  +  E  +          
Sbjct: 526 EYEKLKE--KLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEE--ELAELLKELEE 581

Query: 388 KGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELE---ALSKVALLEA 444
            G    E L  ER+  +E    +   L+  + +L  E   +++ E E   A  ++A  E 
Sbjct: 582 LGFESVEELE-ERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEK 640

Query: 445 RVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLD 504
           R+EE  KE+E L +  +E+     ++L +      R  A   A  E L    +  +  L+
Sbjct: 641 RLEELRKELEELEKKYSEEE---YEELREEYLELSRELAGLRAELEELEKRREEIKKTLE 697

Query: 505 EMQQELTK 512
           ++++EL +
Sbjct: 698 KLKEELEE 705

Length = 880

>gnl|CDD|225803 COG3264, COG3264, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]

 Score = 42.4 bits (100), Expect = 7e-04
 Identities = 33/192 (17%), Positives = 72/192 (37%), Gaps = 27/192 (14%)

Query: 378 RERAEAAAARKGKS------EFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRES 431
           +E AE AA            E      +    + +   ++ +L      L N + ++ +S
Sbjct: 43  QEEAEPAAEEAELQAELIQQELAIND-QLSQALNQQTERLNALASDDRQLANLLLQLLQS 101

Query: 432 ELEALSKVALLEARVEE---REKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAM 488
                 ++A+L   +       +++  L E+   Q    V +  D L++E+    A    
Sbjct: 102 SRTIREQIAVLRGSLLLSRILLQQLGPLPEAGQPQEQFEVTQERDALQAEKAYINALEGQ 161

Query: 489 AERLSLEVQSAQAKLDEMQQELTKARLNETALGSKLRAVSHGKRARADDYEAGVGSVQEM 548
           AE+L+ EV+    ++ + ++EL        +L S+  A+S             +   Q  
Sbjct: 162 AEQLTAEVRDILDQILDTRRELL------NSLLSQREAIS-----------LQLNQQQLS 204

Query: 549 DTNDKVLRANKR 560
             +D++     +
Sbjct: 205 AASDELRSLLHQ 216

Length = 835

>gnl|CDD|233973 TIGR02680, TIGR02680, TIGR02680 family protein

 Score = 42.1 bits (99), Expect = 0.001
 Identities = 48/235 (20%), Positives = 82/235 (34%), Gaps = 22/235 (9%)

Query: 315 ELSEKLEAVNAKAQSFEREARIMEQDKVYL---------EQKYKSEFERFEEVQERCKVA 365
           EL  +L AV+ +     RE R +   +  L         ++  ++   R  E + + + A
Sbjct: 746 ELDARLAAVDDELAELARELRALGARQRALADELAGAPSDRSLRAAHRRAAEAERQAESA 805

Query: 366 EKEAKKATELADRERAEAAAARK---GKSEFENLAMERMAVIERVQRQIESLERQKTDLT 422
           E+E  +A   A    A    AR+     +   +L  +  A +E V   ++        L 
Sbjct: 806 ERELARAARKAAAAAAAWKQARRELERDAADLDLPTDPDA-LEAVGLALKRFGDHLHTLE 864

Query: 423 NEVNRIRESELEALSKVALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSR 482
             V  +R +   A        A    R    ES      E  A    + E+     R   
Sbjct: 865 VAVRELRHAATRA--------AEQRARAARAESDAREAAEDAAEARAEAEEASLRLRTLE 916

Query: 483 AAANAMAERLSLEVQSAQAKLDEMQQELTKARLNETALGSKLRAVSHGKRARADD 537
            +  AM + +   +   +A L    +EL +      A   + R  +  KRA AD 
Sbjct: 917 ESVGAMVDEIRARLAETRAALASGGRELPRLA-EALATAEEARGRAEEKRAEADA 970

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length [Hypothetical proteins, Conserved]. Length = 1353

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 40.8 bits (96), Expect = 0.002
 Identities = 61/264 (23%), Positives = 110/264 (41%), Gaps = 32/264 (12%)

Query: 201 ARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEF 260
             L A  E      EEVEE                E     ++R  +  ++RED+     
Sbjct: 478 EELEAELEDLEEEVEEVEE-----------RLERAEDLVEAEDRIERLEERREDL----- 521

Query: 261 SSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKL 320
              +AE+ E ++EK  + E   +    L  E +         E E    + E  EL+ KL
Sbjct: 522 EELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKL 581

Query: 321 EAVNAKAQSFEREARIM------EQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATE 374
             +  + +S ER   ++      E +   L +K ++  E     + R ++AEK  +K   
Sbjct: 582 AELKERIESLERIRTLLAAIADAEDEIERLREKREALAEL--NDERRERLAEKRERKREL 639

Query: 375 LADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELE 434
            A+ + A    AR+ K   E         +E+V+ +++ L  ++ DL  E+  + E+ELE
Sbjct: 640 EAEFDEARIEEAREDKERAE-------EYLEQVEEKLDELREERDDLQAEIGAV-ENELE 691

Query: 435 ALSKVALLEARVEEREKEIESLLE 458
            L ++      +E R + +E+L +
Sbjct: 692 ELEELRERREALENRVEALEALYD 715

Length = 880

>gnl|CDD|222878 PHA02562, 46, endonuclease subunit; Provisional

 Score = 40.8 bits (96), Expect = 0.002
 Identities = 47/268 (17%), Positives = 94/268 (35%), Gaps = 42/268 (15%)

Query: 71  LVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLAD 130
           L K  I ++  +  +L +K   I+  +K   K +E+  +   E + R  +  ++  + A 
Sbjct: 171 LNKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAK 230

Query: 131 DYTSRINNLQGE----NISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMED-QV 185
              + I  L  E     + + + S++L+K    L    +  K K +Q     K  E   V
Sbjct: 231 TIKAEIEELTDELLNLVMDIEDPSAALNK----LNTAAAKIKSKIEQFQKVIKMYEKGGV 286

Query: 186 CSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERT 245
           C                      Q +S   +                   +K   +Q   
Sbjct: 287 CP------------------TCTQQISEGPDRIT-------------KIKDKLKELQHSL 315

Query: 246 SKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVE 305
            K     +++  EE      E+ +++ E   KI   +Q L TL  + K  ++ +   + E
Sbjct: 316 EKLDTAIDEL--EEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAE 373

Query: 306 ISSQKLETKELSEKLEAVNAKAQSFERE 333
                 E  +L ++L+ +        +E
Sbjct: 374 FVDNAEELAKLQDELDKIVKTKSELVKE 401

Length = 562

>gnl|CDD|205692 pfam13514, AAA_27, AAA domain

 Score = 40.9 bits (96), Expect = 0.002
 Identities = 72/368 (19%), Positives = 116/368 (31%), Gaps = 39/368 (10%)

Query: 163 EISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKR 222
           E+ DW  +      + +A          +L  R     ARL AA   AL A   V   + 
Sbjct: 606 EMEDWLAERATAREQVRAYFKARAELDALLDRR-----ARLRAALRAALKAVAIVLPGEE 660

Query: 223 KYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAE 282
                +  A+  LE+A     R            +      L + E  ++E   + + A+
Sbjct: 661 -LAELLELARQLLEEAEKQAAR------------KASLDERLRDAERALEEAEERHDEAQ 707

Query: 283 QCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKV 342
             L   + +   A  +         +  L+  EL + ++     A    +    ME+D  
Sbjct: 708 SALEAWQEQWYDALLEAGLGGRASPAGALDALELLQNIKEKLQAADDLRQRIAAMERDL- 766

Query: 343 YLEQKYKSEFERFEEVQERCKVAEKEAKKATEL---ADRERAEAAAARKGKSEFENLAME 399
               +++ E E   E      +     + A  L     R R  AAAA K   E E    E
Sbjct: 767 ---ARFEEEVEALAEAVAPEMLGTPADETARALKQRLKRARDTAAAAEKLAEEIEEAEKE 823

Query: 400 RMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKVALLEARVEEREKEIESLLES 459
                      ++  E + T L          EL A  + +     + +R   +E  L  
Sbjct: 824 V----SEAAAALDEAEARLTALLRAARCTTIEELLAAVERSDTYRELRKRIAALERTLVR 879

Query: 460 NN----------EQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQE 509
                       E  A    +L   LE   R           L+ EV +A+ +L  M   
Sbjct: 880 AGGGLSLEALVAEAAALDPDELPARLEELARDIEELEEELNELAQEVGAAKQELARMDGG 939

Query: 510 LTKARLNE 517
            T A L  
Sbjct: 940 STAAELEA 947

This domain is found in a number of double-strand DNA break proteins. This domain contains a P-loop motif. Length = 1118

>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

 Score = 40.1 bits (94), Expect = 0.003
 Identities = 46/229 (20%), Positives = 94/229 (41%), Gaps = 6/229 (2%)

Query: 264 LAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAV 323
           L + ++E+     KI   +     L  +LK+ E+++ S E ++     + K+L +++  +
Sbjct: 40  LKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADL 99

Query: 324 NAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEA 383
           NA+  + E + R  EQ +   EQ   +             V+ ++A+++  LA    A  
Sbjct: 100 NARLNALEVQER--EQRRRLAEQ-LAALQRSGRNPPPALLVSPEDAQRSVRLAIYYGALN 156

Query: 384 AAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKVALLE 443
            A  +     +    +  AV   +  +   L    ++   +  ++ +   E    +A L 
Sbjct: 157 PARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLN 216

Query: 444 ARVEEREKEIESLLESNNEQRAS-TVKKLEDLLESERRSRAAANAMAER 491
           + +   +K++E L    NE R    +   E      R + AAA A A R
Sbjct: 217 SELSADQKKLEEL--RANESRLKNEIASAEAAAAKAREAAAAAEAAAAR 263

Length = 420

>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y

 Score = 40.3 bits (95), Expect = 0.003
 Identities = 27/127 (21%), Positives = 62/127 (48%), Gaps = 9/127 (7%)

Query: 161 KNEISDWKRKYDQVLT----KQKAMEDQVCSEIEVLKSRSTAAEARLAA--AREQALSAQ 214
           K E+   + + ++ L     + + +E ++    E L  +  + + +      +E+ LS +
Sbjct: 57  KEEVHKLRAELERELKERRNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNK 116

Query: 215 E-EVEEWKRKYGVAVREAKAALEKAAIVQERTSKE--MQQREDVLREEFSSTLAEKEEEM 271
           E  ++E + +    + E +  LE+ + + +  +KE  +++ E+  R E +  + E EEE 
Sbjct: 117 EKNLDEKEEELEELIAEQREELERISGLTQEEAKEILLEEVEEEARHEAAKLIKEIEEEA 176

Query: 272 KEKATKI 278
           KE+A K 
Sbjct: 177 KEEADKK 183

Members of this family are RNase Y, an endoribonuclease. The member from Bacillus subtilis, YmdA, has been shown to be involved in turnover of yitJ riboswitch [Transcription, Degradation of RNA]. Length = 514

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 39.8 bits (94), Expect = 0.004
 Identities = 26/120 (21%), Positives = 59/120 (49%), Gaps = 6/120 (5%)

Query: 160 LKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEE 219
            + E+ + + +  ++  +    E+ +  ++E+L+ R    E  L    ++    Q+E+E+
Sbjct: 73  FEKELRERRNELQKLEKRLLQKEENLDRKLELLEKR----EEELEKKEKELEQKQQELEK 128

Query: 220 WKRKYGVAVREAKAALEKAAIVQERTSKEM--QQREDVLREEFSSTLAEKEEEMKEKATK 277
            + +    + E    LE+ + +    +KE+  ++ E+  R E +  + E EEE KE+A K
Sbjct: 129 KEEELEELIEEQLQELERISGLTAEEAKEILLEKVEEEARHEAAVLIKEIEEEAKEEADK 188

Length = 520

>gnl|CDD|218636 pfam05557, MAD, Mitotic checkpoint protein

 Score = 39.9 bits (93), Expect = 0.004
 Identities = 57/284 (20%), Positives = 118/284 (41%), Gaps = 17/284 (5%)

Query: 230 EAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLR 289
           E    L + A +    SK +Q   +++++E     A+ E E K       +  +    L 
Sbjct: 52  EESMTLLQRAELIRSKSKLIQLENELMQKELEHKRAQIELERKASTLAENYERELDRNLE 111

Query: 290 LE--LKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQK 347
           LE  LKA E   +  E E +  + E K L +KL+A + K Q+ + +     ++ +   + 
Sbjct: 112 LEVRLKALEELEKKAENEAAEAEEEAKLLKDKLDAESLKLQNEKEDQLKEAKESISRIKN 171

Query: 348 YKSEFERFEEVQE-RCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIER 406
             SE +   +  +   K+ E E ++  E  +  + E A A K      +          +
Sbjct: 172 DLSEMQCRAQNADTELKLLESELEELREQLEECQKELAEAEKKLQSLTSEQASSADNSVK 231

Query: 407 VQRQIESLERQKTDLTNEVNRIRESELEALSKVALLEARVEEREKEIESLLESNNEQRAS 466
           ++   E L+R + D   EV +  + +L  + ++    A + E  +++ S+ E N      
Sbjct: 232 IKHLEEELKRYEQDA--EVVKSMKEQLLQIPELERELAALREENRKLRSMKEDN------ 283

Query: 467 TVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQEL 510
             + L++ LE  +        M E    ++   + + ++++ EL
Sbjct: 284 --ELLKEELEDLQSRLERFEKMRE----KLADLELEKEKLENEL 321

This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated. Length = 722

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	640
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	99.71
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	99.65
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	99.63
PRK02224	880	chromosome segregation protein; Provisional	99.6
PRK02224	880	chromosome segregation protein; Provisional	99.56
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	99.51
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	99.41
PRK03918	880	chromosome segregation protein; Provisional	99.41
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	99.38
PRK03918	880	chromosome segregation protein; Provisional	99.38
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	99.34
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	99.33
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	99.3
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	99.3
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	99.28
PF02841	297	GBP_C: Guanylate-binding protein, C-terminal domai	99.23
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	99.22
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	99.21
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	99.19
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	99.12
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	99.11
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	99.05
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	99.03
PRK04863	1486	mukB cell division protein MukB; Provisional	99.01
PRK01156	895	chromosome segregation protein; Provisional	98.99
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	98.91
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	98.82
PRK01156	895	chromosome segregation protein; Provisional	98.81
KOG0996	1293	consensus Structural maintenance of chromosome pro	98.81
KOG2037	552	consensus Guanylate-binding protein [General funct	98.78
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	98.74
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	98.73
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	98.72
PF00038	312	Filament: Intermediate filament protein; InterPro:	98.71
PRK04778	569	septation ring formation regulator EzrA; Provision	98.71
KOG0996	1293	consensus Structural maintenance of chromosome pro	98.69
KOG0964	1200	consensus Structural maintenance of chromosome pro	98.68
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	98.63
PF00038	312	Filament: Intermediate filament protein; InterPro:	98.58
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	98.57
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	98.56
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	98.56
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	98.52
PF02841	297	GBP_C: Guanylate-binding protein, C-terminal domai	98.48
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	98.43
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	98.42
KOG0933	1174	consensus Structural maintenance of chromosome pro	98.35
KOG0933	1174	consensus Structural maintenance of chromosome pro	98.32
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	98.3
PHA02562	562	46 endonuclease subunit; Provisional	98.27
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	98.25
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	98.21
KOG0964	1200	consensus Structural maintenance of chromosome pro	98.19
PRK04863	1486	mukB cell division protein MukB; Provisional	98.19
PRK11637	428	AmiB activator; Provisional	98.1
PHA02562	562	46 endonuclease subunit; Provisional	98.07
KOG0971	1243	consensus Microtubule-associated protein dynactin	97.92
KOG1003	205	consensus Actin filament-coating protein tropomyos	97.88
KOG0971	1243	consensus Microtubule-associated protein dynactin	97.85
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	97.84
PRK04778	569	septation ring formation regulator EzrA; Provision	97.84
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	97.84
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	97.8
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	97.8
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	97.8
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	97.75
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	97.75
KOG1003	205	consensus Actin filament-coating protein tropomyos	97.66
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	97.61
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	97.59
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	97.58
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	97.52
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	97.47
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	97.44
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	97.37
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	97.3
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	97.3
COG4942	420	Membrane-bound metallopeptidase [Cell division and	97.29
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	97.28
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	97.28
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	97.28
COG4942	420	Membrane-bound metallopeptidase [Cell division and	97.19
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	97.19
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	97.18
KOG0018	1141	consensus Structural maintenance of chromosome pro	97.12
KOG4673	961	consensus Transcription factor TMF, TATA element m	97.1
PRK11281	1113	hypothetical protein; Provisional	97.1
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	97.03
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	97.03
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	97.01
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	97.01
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	97.0
PRK10929	1109	putative mechanosensitive channel protein; Provisi	96.97
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	96.93
COG4372	499	Uncharacterized protein conserved in bacteria with	96.93
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	96.92
PRK09039	343	hypothetical protein; Validated	96.88
KOG0962	1294	consensus DNA repair protein RAD50, ABC-type ATPas	96.87
PRK09039	343	hypothetical protein; Validated	96.87
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	96.8
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	96.8
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	96.79
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	96.75
PF14662	193	CCDC155: Coiled-coil region of CCDC155	96.72
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	96.71
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	96.68
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	96.66
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	96.61
PRK11281	1113	hypothetical protein; Provisional	96.52
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	96.52
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	96.5
KOG0962	1294	consensus DNA repair protein RAD50, ABC-type ATPas	96.47
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	96.47
PF13514	1111	AAA_27: AAA domain	96.43
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	96.39
COG4372	499	Uncharacterized protein conserved in bacteria with	96.37
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	96.35
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	96.34
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	96.31
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	96.26
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	96.19
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	96.14
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	96.14
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	96.12
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	96.09
KOG4593	716	consensus Mitotic checkpoint protein MAD1 [Cell cy	96.09
PRK10929	1109	putative mechanosensitive channel protein; Provisi	96.06
PF09787	511	Golgin_A5: Golgin subfamily A member 5; InterPro:	96.01
KOG0018	1141	consensus Structural maintenance of chromosome pro	95.89
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	95.81
KOG0243	1041	consensus Kinesin-like protein [Cytoskeleton]	95.79
PF14662	193	CCDC155: Coiled-coil region of CCDC155	95.76
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	95.69
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	95.66
PF13870	177	DUF4201: Domain of unknown function (DUF4201)	95.56
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	95.55
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	95.54
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	95.54
KOG4673	961	consensus Transcription factor TMF, TATA element m	95.53
TIGR03017	444	EpsF chain length determinant protein EpsF. Sequen	95.52
KOG0979	1072	consensus Structural maintenance of chromosome pro	95.45
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	95.42
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	95.38
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	95.37
PRK10698	222	phage shock protein PspA; Provisional	95.27
PF13514	1111	AAA_27: AAA domain	95.19
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	95.17
PF09787	511	Golgin_A5: Golgin subfamily A member 5; InterPro:	95.04
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	95.02
KOG4593	716	consensus Mitotic checkpoint protein MAD1 [Cell cy	94.99
KOG0963	629	consensus Transcription factor/CCAAT displacement	94.81
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	94.81
KOG0249	916	consensus LAR-interacting protein and related prot	94.74
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	94.69
TIGR03017	444	EpsF chain length determinant protein EpsF. Sequen	94.58
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	94.52
KOG0963	629	consensus Transcription factor/CCAAT displacement	94.41
KOG0243	1041	consensus Kinesin-like protein [Cytoskeleton]	94.36
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	94.31
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	93.87
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	93.58
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	93.56
PF12795	240	MscS_porin: Mechanosensitive ion channel porin dom	93.2
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	93.17
PRK10246	1047	exonuclease subunit SbcC; Provisional	93.08
PRK10869	553	recombination and repair protein; Provisional	93.01
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	93.0
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	92.83
KOG0979	1072	consensus Structural maintenance of chromosome pro	92.53
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	92.53
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	92.45
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	92.43
COG4717	984	Uncharacterized conserved protein [Function unknow	92.38
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	92.33
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	91.75
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	91.74
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	91.73
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	91.65
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	91.63
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	91.52
COG2433	652	Uncharacterized conserved protein [Function unknow	91.31
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	91.27
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	91.07
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	91.01
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	90.84
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	90.73
PF15254	861	CCDC14: Coiled-coil domain-containing protein 14	90.36
PRK10246	1047	exonuclease subunit SbcC; Provisional	90.26
KOG1899	861	consensus LAR transmembrane tyrosine phosphatase-i	90.22
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	89.99
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	89.99
PF10186	302	Atg14: UV radiation resistance protein and autopha	89.93
PF15294	278	Leu_zip: Leucine zipper	89.69
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	89.52
KOG0249	916	consensus LAR-interacting protein and related prot	89.4
COG4477	570	EzrA Negative regulator of septation ring formatio	89.32
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	89.24
PF12795	240	MscS_porin: Mechanosensitive ion channel porin dom	89.07
PF06008	264	Laminin_I: Laminin Domain I; InterPro: IPR009254 L	88.98
PF13870	177	DUF4201: Domain of unknown function (DUF4201)	88.95
PRK10869	553	recombination and repair protein; Provisional	88.49
PRK15422	79	septal ring assembly protein ZapB; Provisional	88.49
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	88.38
PF06705	247	SF-assemblin: SF-assemblin/beta giardin	88.08
PF05266	190	DUF724: Protein of unknown function (DUF724); Inte	87.86
COG4026	290	Uncharacterized protein containing TOPRIM domain,	87.66
PF06785	401	UPF0242: Uncharacterised protein family (UPF0242);	87.62
PF15066	527	CAGE1: Cancer-associated gene protein 1 family	87.17
KOG2037	552	consensus Guanylate-binding protein [General funct	86.94
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	86.77
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	86.64
TIGR01010	362	BexC_CtrB_KpsE polysaccharide export inner-membran	86.26
PF06785	401	UPF0242: Uncharacterised protein family (UPF0242);	86.25
KOG4360	596	consensus Uncharacterized coiled coil protein [Fun	86.21
PRK09841	726	cryptic autophosphorylating protein tyrosine kinas	86.12
COG2433	652	Uncharacterized conserved protein [Function unknow	85.94
PRK11519	719	tyrosine kinase; Provisional	85.88
PRK10884	206	SH3 domain-containing protein; Provisional	85.78
PF09744	158	Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; Inte	85.73
PF02050	123	FliJ: Flagellar FliJ protein; InterPro: IPR012823	85.26
PF14073	178	Cep57_CLD: Centrosome localisation domain of Cep57	85.06
PF05384	159	DegS: Sensor protein DegS; InterPro: IPR008595 Thi	84.93
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	84.86
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	84.81
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	84.64
TIGR02977	219	phageshock_pspA phage shock protein A. Members of	84.53
PF09738	302	DUF2051: Double stranded RNA binding protein (DUF2	84.36
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	84.01
COG5185	622	HEC1 Protein involved in chromosome segregation, i	83.15
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	82.61
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	82.55
PF12777	344	MT: Microtubule-binding stalk of dynein motor; Int	82.53
COG4717	984	Uncharacterized conserved protein [Function unknow	82.47
PF13166	712	AAA_13: AAA domain	82.44
PF04582	326	Reo_sigmaC: Reovirus sigma C capsid protein; Inter	82.18
KOG1853	333	consensus LIS1-interacting protein NUDE [Cytoskele	82.18
KOG4360	596	consensus Uncharacterized coiled coil protein [Fun	81.52
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	80.72

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=99.71  E-value=2.3e-13  Score=165.84  Aligned_cols=314  Identities=22%  Similarity=0.278  Sum_probs=192.4

Q ss_pred             hhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHhhhH
Q 006565          186 CSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAAL------------------EKAAIVQERTSK  247 (640)
Q Consensus       186 AAGIsklK~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAe------------------ek~a~L~er~~~  247 (640)
                      +|||++|+.|+.+|+.+|..|.+||+++.+++.|++++++.|..|+..|+                  .++..+..+.+ 
T Consensus       164 aaGv~~y~~r~~ea~~~L~~~~~nl~~~~~~~~el~~~l~~L~~q~~~a~~y~~l~~e~~~~~~~~~~~~~~~~~~~l~-  242 (1163)
T COG1196         164 AAGVSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELE-  242 (1163)
T ss_pred             HhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            89999999999999999999999999999999999999999999999998                  11111222221 


Q ss_pred             HHhhhHHHH---HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHH
Q 006565          248 EMQQREDVL---REEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVN  324 (640)
Q Consensus       248 ~~q~r~~a~---ree~~s~le~kE~kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~  324 (640)
                      .....+..+   ..++...+...+..+..++.++......+..++.++......+..++.++..+..++..+......+.
T Consensus       243 ~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~~  322 (1163)
T COG1196         243 ELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELE  322 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222222222   22333334444555555555555555555555555555555566666666666666666666655555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 006565          325 AKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVI  404 (640)
Q Consensus       325 ~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~kea~e~~~~areead~aq~E~~elQr~~~qrlaeI  404 (640)
                      ..+.....++......+.....................++.+.....   ......+.+...+.+...+.....+..+++
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  399 (1163)
T COG1196         323 ERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSA---LLEELEELFEALREELAELEAELAEIRNEL  399 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555555554322222222222222222222222210   111222233444555566666666666666


Q ss_pred             HHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          405 ERVQRQIESLERQKTDLTNEVNRIRESELEALSK-VALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRA  483 (640)
Q Consensus       405 erl~~qIE~lEre~e~Le~E~~~l~~sEl~al~k-v~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~l~  483 (640)
                      ..++.+++.++.+++.+......+. .++..+.. +..+...+++.+.++..+ ....+.+...+..++..+...+..+.
T Consensus       400 ~~l~~~i~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~  477 (1163)
T COG1196         400 EELKREIESLEERLERLSERLEDLK-EELKELEAELEELQTELEELNEELEEL-EEQLEELRDRLKELERELAELQEELQ  477 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666666666666666666666 56666655 666666777777777777 77777777777777777777777777


Q ss_pred             HHHHHHHHhhHHHHHHHHHHHH
Q 006565          484 AANAMAERLSLEVQSAQAKLDE  505 (640)
Q Consensus       484 e~nrrleal~~e~~~lqs~id~  505 (640)
                      .....+......+..+......
T Consensus       478 ~~~~~l~~~~~~~~~l~~~~~~  499 (1163)
T COG1196         478 RLEKELSSLEARLDRLEAEQRA  499 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhh
Confidence            7777777777766666665443

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=99.65  E-value=7.9e-12  Score=150.59  Aligned_cols=316  Identities=17%  Similarity=0.201  Sum_probs=159.8

Q ss_pred             hhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH------------HHHHHHhhhH
Q 006565          186 CSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAAL------EK------------AAIVQERTSK  247 (640)
Q Consensus       186 AAGIsklK~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAe------ek------------~a~L~er~~~  247 (640)
                      ++||..|..+...+..+|..+..++.++.+.+.+.+.+++.+..+...+.      ..            +..+..... 
T Consensus       162 ~~g~~~~~~~~~~~~~~l~~~~~~l~el~~~~~~L~~q~~~l~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-  240 (1164)
T TIGR02169       162 IAGVAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKE-  240 (1164)
T ss_pred             HhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            78999999999999999999988888888888888888888888777554      11            111111111 


Q ss_pred             HHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHhhHHHHHHHHHHHHHHHHHH
Q 006565          248 EMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAE-SKMRSYEVEISSQKLETKELSEKLEAVNAK  326 (640)
Q Consensus       248 ~~q~r~~a~ree~~s~le~kE~kie~~k~ei~~aEq~la~~q~eL~e~e-~kIk~~e~ei~~le~el~~L~ekle~~~~e  326 (640)
                      ....+    ...+...+..++.++..+..++...+..+..++..+.... .++..+..++..+..++..+..+...+..+
T Consensus       241 ~~~~~----l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  316 (1164)
T TIGR02169       241 AIERQ----LASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERE  316 (1164)
T ss_pred             HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            12222    2222233333444444444444444444444444444321 222234444444444444444444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-------HH
Q 006565          327 AQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLA-------ME  399 (640)
Q Consensus       327 ies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~kea~e~~~~areead~aq~E~~elQr~~-------~q  399 (640)
                      +.....++..+..++..+..++......+......+..++..+..+.......+..+...+.+...+....       ..
T Consensus       317 l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~  396 (1164)
T TIGR02169       317 LEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEK  396 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444444444444444444444444444444444444444444444444444433333       33


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 006565          400 RMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSK-VALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESE  478 (640)
Q Consensus       400 rlaeIerl~~qIE~lEre~e~Le~E~~~l~~sEl~al~k-v~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~  478 (640)
                      ...++..+..++..++.++..+...+..+. .++..+.. +..+...+......++.+ ....+.+...+..++..+...
T Consensus       397 l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~-~~~~~l~~~~~~l~~~~~~~~~~l~~l-~~~~~~~~~~~~~~~~~l~~~  474 (1164)
T TIGR02169       397 LKREINELKRELDRLQEELQRLSEELADLN-AAIAGIEAKINELEEEKEDKALEIKKQ-EWKLEQLAADLSKYEQELYDL  474 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444444444444444444444 44444444 444445555555555544 555555555555555555555


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 006565          479 RRSRAAANAMAERLSLEVQSAQAKLDEMQQ  508 (640)
Q Consensus       479 re~l~e~nrrleal~~e~~~lqs~id~Leg  508 (640)
                      +..+...+..+..+..++..++..++.+++
T Consensus       475 ~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~  504 (1164)
T TIGR02169       475 KEEYDRVEKELSKLQRELAEAEAQARASEE  504 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            555555555555555555555555544443

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=99.63  E-value=1.3e-11  Score=148.34  Aligned_cols=295  Identities=20%  Similarity=0.250  Sum_probs=176.1

Q ss_pred             hhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHH------------hhhH
Q 006565          186 CSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEK------AAIVQE------------RTSK  247 (640)
Q Consensus       186 AAGIsklK~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAeek------~a~L~e------------r~~~  247 (640)
                      ++|++.|+.       ++..|..||.|+.|++.|++.++..|..|+++|...      +..+..            ... 
T Consensus       164 ~~~~~~~~~-------~~~~t~~nL~r~~d~l~el~~ql~~L~~q~~~a~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~-  235 (1179)
T TIGR02168       164 AAGISKYKE-------RRKETERKLERTRENLDRLEDILNELERQLKSLERQAEKAERYKELKAELRELELALLVLRLE-  235 (1179)
T ss_pred             HccHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            468887765       677888899999999999999999999999999821      111111            111 


Q ss_pred             HHhhhHHHH---HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHH
Q 006565          248 EMQQREDVL---REEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVN  324 (640)
Q Consensus       248 ~~q~r~~a~---ree~~s~le~kE~kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~  324 (640)
                      ........+   ...+...+...+.++..+...+......+..++..+.....++..+...+..++.++..+..++..+.
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~~~~~~~~~~~l~  315 (1179)
T TIGR02168       236 ELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLE  315 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            111111110   12222233444444444444444444555555555566666666677777777777777777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 006565          325 AKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVI  404 (640)
Q Consensus       325 ~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~kea~e~~~~areead~aq~E~~elQr~~~qrlaeI  404 (640)
                      ..+..+..++..+..++..+...+......+......++.++..+.........+...+...+.+...++........++
T Consensus       316 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  395 (1179)
T TIGR02168       316 RQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQI  395 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777777777777777777777777777777777777777766666666666666666666666666666666666


Q ss_pred             HHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHH-H-----HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 006565          405 ERVQRQIESLERQKTDLTNEVNRIRESELEALSK-V-----ALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESE  478 (640)
Q Consensus       405 erl~~qIE~lEre~e~Le~E~~~l~~sEl~al~k-v-----~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~  478 (640)
                      ..+..++..++.++..+..++..+. .++..+.. +     ..+...+.....+++.+ ......+..++..+...+...
T Consensus       396 ~~~~~~~~~l~~~~~~l~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~l~~~~~~~  473 (1179)
T TIGR02168       396 ASLNNEIERLEARLERLEDRRERLQ-QEIEELLKKLEEAELKELQAELEELEEELEEL-QEELERLEEALEELREELEEA  473 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence            6666666666666666666666665 55544433 3     34444444444444444 333344444444444444444


Q ss_pred             HHHHHHHHHHHH
Q 006565          479 RRSRAAANAMAE  490 (640)
Q Consensus       479 re~l~e~nrrle  490 (640)
                      +..+..+..++.
T Consensus       474 ~~~~~~l~~~~~  485 (1179)
T TIGR02168       474 EQALDAAERELA  485 (1179)
T ss_pred             HHHHHHHHHHHH
Confidence            444444443333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>PRK02224 chromosome segregation protein; Provisional

Probab=99.60  E-value=3.2e-09  Score=126.03  Aligned_cols=106  Identities=28%  Similarity=0.352  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhh
Q 006565          348 YKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNR  427 (640)
Q Consensus       348 l~se~er~ee~~~rleeaEee~kea~e~~~~areead~aq~E~~elQr~~~qrlaeIerl~~qIE~lEre~e~Le~E~~~  427 (640)
                      ++....++.++..++..++..+......++.+....+.+..++.++.....++..++.+++ .+..+..++..+..++..
T Consensus       532 le~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le-~~~~~~~~i~~~~~~~~~  610 (880)
T PRK02224        532 IEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLE-RIRTLLAAIADAEDEIER  610 (880)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence            3333344444444444444444444444455555555555555566666666666666665 456666666666666665


Q ss_pred             hcHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 006565          428 IRESELEALSK-VALLEARVEEREKEIES  455 (640)
Q Consensus       428 l~~sEl~al~k-v~~lE~~vee~e~eiE~  455 (640)
                      ++ .++..+.. ...+..++.+++..++.
T Consensus       611 ~~-~~~~~l~~~~~~~~~~l~~~r~~i~~  638 (880)
T PRK02224        611 LR-EKREALAELNDERRERLAEKRERKRE  638 (880)
T ss_pred             HH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55 55554444 34444444444444444

>PRK02224 chromosome segregation protein; Provisional

Probab=99.56  E-value=6.7e-09  Score=123.38  Aligned_cols=142  Identities=18%  Similarity=0.266  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHH-HHHHHHHHHH
Q 006565          370 KKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSK-VALLEARVEE  448 (640)
Q Consensus       370 kea~e~~~~areead~aq~E~~elQr~~~qrlaeIerl~~qIE~lEre~e~Le~E~~~l~~sEl~al~k-v~~lE~~vee  448 (640)
                      ......+...+..+...+.+.....+.+-+..+....+...+..+..+++.+..++.++. . +..+.. +..++..+.+
T Consensus       533 e~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le-~-~~~~~~~i~~~~~~~~~  610 (880)
T PRK02224        533 EEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLE-R-IRTLLAAIADAEDEIER  610 (880)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHH
Confidence            333333444444444444444333333333334444444455555555555555555555 2 444444 5555555555


Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhh
Q 006565          449 REKEIESLLESNNEQRASTVKKLEDLLES------------ERRSRAAANAMAERLSLEVQSAQAKLDEMQQELTKAR  514 (640)
Q Consensus       449 ~e~eiE~L~~~~~eq~~~~l~~le~~le~------------~re~l~e~nrrleal~~e~~~lqs~id~Leg~~~~~~  514 (640)
                      ++..++.| ....+.+...+..+...+..            ++..+..++..+..+...+..+.+.++.+.+....+.
T Consensus       611 ~~~~~~~l-~~~~~~~~~~l~~~r~~i~~l~~~~~~~~~e~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~i~~~~  687 (880)
T PRK02224        611 LREKREAL-AELNDERRERLAEKRERKRELEAEFDEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVE  687 (880)
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555 54444445555444444444            3445555555555555556666666666666665433

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=99.51  E-value=1.3e-09  Score=131.48  Aligned_cols=308  Identities=19%  Similarity=0.219  Sum_probs=179.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHH--------HHHHHhHHHHH
Q 006565          195 RSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDV--------LREEFSSTLAE  266 (640)
Q Consensus       195 Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAeek~a~L~er~~~~~q~r~~a--------~ree~~s~le~  266 (640)
                      .......++..+..+|.++.|.+.+++.++..|..|++.+........ +.. ........        -...+..++..
T Consensus       164 g~~~~~~~~~~~~~~l~~~~~~l~el~~~~~~L~~q~~~l~~~~e~~~-~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~  241 (1164)
T TIGR02169       164 GVAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAE-RYQ-ALLKEKREYEGYELLKEKEALERQKEA  241 (1164)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356678889999999999999999999999999999988874444221 111 22111110        01122222333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhh--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          267 KEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISS--------QKLETKELSEKLEAVNAKAQSFEREARIME  338 (640)
Q Consensus       267 kE~kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~--------le~el~~L~ekle~~~~eies~e~el~~L~  338 (640)
                      ...++.....++......++.+...+..+...+..+...+..        ++.++..+..+...+..++..++.++..+.
T Consensus       242 ~~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~  321 (1164)
T TIGR02169       242 IERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAE  321 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333334444444444444444444444444444444333333        555555566666666666666666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          339 QDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQK  418 (640)
Q Consensus       339 ~ei~~L~ekl~se~er~ee~~~rleeaEee~kea~e~~~~areead~aq~E~~elQr~~~qrlaeIerl~~qIE~lEre~  418 (640)
                      .++..+...+.............+...+.++..+......+...+...+.....++....+....+..++..+..+.+++
T Consensus       322 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~  401 (1164)
T TIGR02169       322 ERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREI  401 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666666666666666666666666666666666666666666666666666666666666677777777777777


Q ss_pred             HHhHHHHhhhcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 006565          419 TDLTNEVNRIRESELEALSK-VALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQ  497 (640)
Q Consensus       419 e~Le~E~~~l~~sEl~al~k-v~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~l~e~nrrleal~~e~~  497 (640)
                      ..+...+..+. .++..+.. +..+...++..+.++..+ ..........+..+...+......+...+..+..+..++.
T Consensus       402 ~~~~~~~~~l~-~~l~~l~~~~~~~~~~~~~l~~~~~~l-~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~l~  479 (1164)
T TIGR02169       402 NELKRELDRLQ-EELQRLSEELADLNAAIAGIEAKINEL-EEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYD  479 (1164)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77766666666 66666665 656666666655555555 5555555555555555554444444444444444444444


Q ss_pred             HHHHHHHHH
Q 006565          498 SAQAKLDEM  506 (640)
Q Consensus       498 ~lqs~id~L  506 (640)
                      .++..+..+
T Consensus       480 ~l~~~l~~l  488 (1164)
T TIGR02169       480 RVEKELSKL  488 (1164)
T ss_pred             HHHHHHHHH
Confidence            444444433

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=99.41  E-value=1.2e-06  Score=105.83  Aligned_cols=24  Identities=13%  Similarity=0.184  Sum_probs=16.0

Q ss_pred             hhHHHHHHHHHhcCchhhhhhccCCC
Q 006565          599 FTVQKLKQELTKHNFGAELLQLRNPN  624 (640)
Q Consensus       599 ~t~~kl~~el~~~~~g~~l~~l~~~~  624 (640)
                      -.+..|+..+...|  +.+-++..++
T Consensus       965 ~~~~~l~~~i~~lg--~aiee~~~~~  988 (1179)
T TIGR02168       965 DDEEEARRRLKRLE--NKIKELGPVN  988 (1179)
T ss_pred             cCHHHHHHHHHHHH--HHHHHcCCCC
Confidence            35678888887664  4666776555

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>PRK03918 chromosome segregation protein; Provisional

Probab=99.41  E-value=1.5e-06  Score=103.22  Aligned_cols=12  Identities=25%  Similarity=0.255  Sum_probs=5.2

Q ss_pred             hhhHHHHHHHHH
Q 006565           29 IDNVVKVLDGLI   40 (640)
Q Consensus        29 ~~~~~~~l~~~l   40 (640)
                      ..+|-..|+..+
T Consensus       110 ~~~~~~~i~~~~  121 (880)
T PRK03918        110 DSSVREWVERLI  121 (880)
T ss_pred             HHHHHHHHHHhc
Confidence            334444444433

>TIGR00606 rad50 rad50

Probab=99.38  E-value=1.2e-07  Score=117.64  Aligned_cols=487  Identities=13%  Similarity=0.142  Sum_probs=211.0

Q ss_pred             hhHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHhhhhcc---cCCchHH-HHHHHHHHh--hhchHHHHHHHHH---h
Q 006565            7 CSSAIQSMERKLRAACHSSDASIDNVVKVLDGLISEYETSC---HGPGKWQ-KLATFLQQS--SEGPILDLVKRLI---D   77 (640)
Q Consensus         7 c~~~~~~me~~l~~ac~~~~a~~~~~~~~l~~~l~~y~~s~---~G~g~~~-k~~~~L~~~--l~~~~~d~~~~~~---~   77 (640)
                      |..-++...++|..+|     .+++.-.+|..+=..|+..-   ..+.... -|.+|+...  -..|-+.+|.+-|   .
T Consensus       617 ~~~eL~~~~~~i~~~~-----~~~~~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~k~ie~a~~~~~~~C~LC~R~f~~ee  691 (1311)
T TIGR00606       617 KEEQLSSYEDKLFDVC-----GSQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEA  691 (1311)
T ss_pred             HHHHHHHHHHHHhcCC-----CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcCCCCCCCCCChh
Confidence            3444555555665444     44555555555555555544   2222222 666777766  5566777777777   3


Q ss_pred             HHHhHHHHHHhhhcCchhHHHHHHHHHHhhHHhHHHHHHHhhHHhHHHHHhhHHHHHHHHhHHhhhcchHHhHHhhHHhH
Q 006565           78 QIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTV  157 (640)
Q Consensus        78 ~i~~~~~~l~~~c~s~~~k~~~~~k~le~~~k~~~~~~k~~e~~i~d~kk~~~~~~~~~~~l~~k~~s~ee~~~~l~k~l  157 (640)
                      .+....+.|.-...+..++++.+.+.++...       ..|+.    +..+...|..-...+...+..+++++..+...|
T Consensus       692 e~~~f~~~L~~~~~~~p~~~~~~~~~~~~~~-------~~~e~----l~~l~~~~~~~~~l~~~eip~l~~~l~~le~~l  760 (1311)
T TIGR00606       692 ELQEFISDLQSKLRLAPDKLKSTESELKKKE-------KRRDE----MLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDI  760 (1311)
T ss_pred             HHHHHHHHHHHHHhcchhhHHHHHHHHHHHH-------HHHHH----HHHhhhhHHHHHHHHHhhchhHHHHHHHHHHHH
Confidence            3344444444444444334444433333222       22221    122222222222222233333333333333333


Q ss_pred             HhhhhhhHHHHHHHHHHHhHhhHh---------hHHHhhhHHHHhhhhHHHHHHH---------HHHHHHHHHHHHHHHH
Q 006565          158 DSLKNEISDWKRKYDQVLTKQKAM---------EDQVCSEIEVLKSRSTAAEARL---------AAAREQALSAQEEVEE  219 (640)
Q Consensus       158 e~~~~e~~ew~~kYe~~~~~~k~~---------~~~~AAGIsklK~Rkkeae~RL---------~at~enL~RVkDel~E  219 (640)
                      ...+.+..+....++....+...+         -+++...|..++.+.......+         ..+...+..++..+..
T Consensus       761 ~~~~~~le~~~~~l~~~~~~~~~~esL~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~~~~s~~ele~ei~~~~~el~~  840 (1311)
T TIGR00606       761 QRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDT  840 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHH
Confidence            333333333333333222222111         1222333333333333333322         3344445555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          220 WKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKM  299 (640)
Q Consensus       220 wkrky~~L~~QAKkAeek~a~L~er~~~~~q~r~~a~ree~~s~le~kE~kie~~k~ei~~aEq~la~~q~eL~e~e~kI  299 (640)
                      ....++.+..+......++..|+.+++ .+......+...+. ....+++.+++++.++......+..+..++..+..++
T Consensus       841 l~~~~e~l~~e~e~~~~eI~~Lq~ki~-el~~~klkl~~~l~-~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~  918 (1311)
T TIGR00606       841 VVSKIELNRKLIQDQQEQIQHLKSKTN-ELKSEKLQIGTNLQ-RRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFL  918 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence            555555556666666666666666664 55555333333333 2222233444444444444444444444444333333


Q ss_pred             hhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          300 RSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRE  379 (640)
Q Consensus       300 k~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~kea~e~~~~a  379 (640)
                      ..+..+...+..+...-..+....-..+...-..+..+...|..+...-  ....+......+..+...+..+..+....
T Consensus       919 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~~--~~~qL~~~e~el~~~~~~ie~le~e~~~l  996 (1311)
T TIGR00606       919 EKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDG--KDDYLKQKETELNTVNAQLEECEKHQEKI  996 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333222222222222222222233333333333221110  00223333444444444444444444444


Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhHHHHhhhcHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 006565          380 RAEAAAARKGKSEFENLAMERMAVIERV--QRQIESLERQKTDLTNEVNRIRESELEALSK-VALLEARVEEREKEIESL  456 (640)
Q Consensus       380 reead~aq~E~~elQr~~~qrlaeIerl--~~qIE~lEre~e~Le~E~~~l~~sEl~al~k-v~~lE~~vee~e~eiE~L  456 (640)
                      ...+...+++...++...-.....|..+  ...+..++.++..|..+...+.   ...+.. ...+...+..+......+
T Consensus       997 ~~~i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~~~~~~~~---~~~~~~e~~~l~~~~~~l~~~~a~l 1073 (1311)
T TIGR00606       997 NEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQ---VLQMKQEHQKLEENIDLIKRNHVLA 1073 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444444433334333  3344444444444443333332   122222 333333333333333333


Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhcccccccchhhh
Q 006565          457 LESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQELTKARLNETALGSKLRA  526 (640)
Q Consensus       457 ~~~~~eq~~~~l~~le~~le~~re~l~e~nrrleal~~e~~~lqs~id~Leg~~~~~~~~et~l~~~~k~  526 (640)
                       .-...++..+|..+..+|++  .....+..+....-.++.+++--++.|..|.       .|||.-+-.
T Consensus      1074 -~g~~k~le~qi~~l~~eL~e--~~yk~a~~ryrka~i~~~~~~~~~~d~~~~~-------~~~~~~~~~ 1133 (1311)
T TIGR00606      1074 -LGRQKGYEKEIKHFKKELRE--PQFRDAEEKYREMMIVMRTTELVNKDLDIYY-------KTLDQAIMK 1133 (1311)
T ss_pred             -HHHHHHHHHHHHHHHHHHcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
Confidence             33333445555555555543  3444556666666677778887788887776       567765554

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK03918 chromosome segregation protein; Provisional

Probab=99.38  E-value=1.8e-06  Score=102.64  Aligned_cols=67  Identities=25%  Similarity=0.284  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 006565          439 VALLEARVEEREKEIESLLE-----SNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEM  506 (640)
Q Consensus       439 v~~lE~~vee~e~eiE~L~~-----~~~eq~~~~l~~le~~le~~re~l~e~nrrleal~~e~~~lqs~id~L  506 (640)
                      +..+..++..++..++.+ .     ...+.+...+..++..+.++...+......++.+..++..++..+..+
T Consensus       635 i~~l~~~i~~l~~~~~~l-~~~~~~~~~~~l~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~i~~~~~~~~~l  706 (880)
T PRK03918        635 LAETEKRLEELRKELEEL-EKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEER  706 (880)
T ss_pred             HHHHHHHHHHHHHHHHHH-HhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444 3     334444455555555555555555555555555555544444444443

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=99.34  E-value=2.2e-06  Score=107.71  Aligned_cols=438  Identities=19%  Similarity=0.232  Sum_probs=246.9

Q ss_pred             hHHHhHHHHHHhhhcCchhHHHHHHHHHHhhHHhHHHH---HHHhhHHhHHHHHhhHHHHHHHHhHHhhhcchHHhHHhh
Q 006565           77 DQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEY---LKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSL  153 (640)
Q Consensus        77 ~~i~~~~~~l~~~c~s~~~k~~~~~k~le~~~k~~~~~---~k~~e~~i~d~kk~~~~~~~~~~~l~~k~~s~ee~~~~l  153 (640)
                      +++..-.+.|..++.-.-.....+.++|+..+...+-+   ...+..-|.|+++..+.-..+.+.|...++.++..|..|
T Consensus      1255 ~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l 1334 (1930)
T KOG0161|consen 1255 DEQERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEETREKSALENALRQLEHELDLL 1334 (1930)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444566667767777888888888888555444   445777788889999999999999999999999999998


Q ss_pred             HHhHHhh--------------hhhhHHHHHHHHHHHhHhhHhhHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          154 SKTVDSL--------------KNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEE  219 (640)
Q Consensus       154 ~k~le~~--------------~~e~~ew~~kYe~~~~~~k~~~~~~AAGIsklK~Rkkeae~RL~at~enL~RVkDel~E  219 (640)
                      .+++|..              -.++.+|+++|+..+..          ++..+..-++.+..++.+..+.++.+.-....
T Consensus      1335 ~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~~~~~----------~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~ 1404 (1930)
T KOG0161|consen 1335 REQLEEEQEAKNELERKLSKANAELAQWKKKFEEEVLQ----------RLEELEELKKKLQQRLQELEEQIEAANAKNAS 1404 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            8888754              45677899999887663          23344455566666666666666666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH---HHhhhHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          220 WKRKYGVAVREAKAALEKAAIV---QERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAE  296 (640)
Q Consensus       220 wkrky~~L~~QAKkAeek~a~L---~er~~~~~q~r~~a~ree~~s~le~kE~kie~~k~ei~~aEq~la~~q~eL~e~e  296 (640)
                      .++-+..|...+..+.-....+   -+..+ .-+-+-+-+..+.....+.+-.+++....+....+..+-.+...+.+..
T Consensus      1405 Lek~k~~l~~el~d~~~d~~~~~~~~~~le-~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~ 1483 (1930)
T KOG0161|consen 1405 LEKAKNRLQQELEDLQLDLERSRAAVAALE-KKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELL 1483 (1930)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            6555555555555544222221   11111 1111112223333333333333333333444444444444444444444


Q ss_pred             HHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHH-
Q 006565          297 SKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFE------------------RFEE-  357 (640)
Q Consensus       297 ~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~e------------------r~ee-  357 (640)
                      ..+..+..+-+.+..+|..|..........++.+++..+.+..++..|+..++.+..                  ..-+ 
T Consensus      1484 e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~le~eE~~~lr~~~~~~~~r~e~ 1563 (1930)
T KOG0161|consen 1484 EQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAALEAEEDKKLRLQLELQQLRSEI 1563 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence            455555555555555555555555555555555555555555555555555544441                  1111 


Q ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhh------
Q 006565          358 ---VQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRI------  428 (640)
Q Consensus       358 ---~~~rleeaEee~kea~e~~~~areead~aq~E~~elQr~~~qrlaeIerl~~qIE~lEre~e~Le~E~~~l------  428 (640)
                         +..+-++++...+.....++..+..++.=.....+.-+..-....+|..++.+++...+...++...+..+      
T Consensus      1564 er~l~ek~Ee~E~~rk~~~~~i~~~q~~Le~E~r~k~e~~r~KKkle~di~elE~~ld~ank~~~d~~K~lkk~q~~~k~ 1643 (1930)
T KOG0161|consen 1564 ERRLQEKDEEIEELRKNLQRQLESLQAELEAETRSKSEALRSKKKLEGDINELEIQLDHANKANEDAQKQLKKLQAQLKE 1643 (1930)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhHHHHHHHHhhHHHHHH
Confidence               11222233333344444444444444443333444333333444455555555555555444444443222      


Q ss_pred             --------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 006565          429 --------RESELEALSKVALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQ  500 (640)
Q Consensus       429 --------~~sEl~al~kv~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~l~e~nrrleal~~e~~~lq  500 (640)
                              ..+.-+.+..+...+.++.-.+.++++| ...++........++.++.+..+.++..+..-.++..+..-+.
T Consensus      1644 lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL-~~~l~~~~Rarr~aE~e~~E~~e~i~~~~~~~s~l~~~KrklE 1722 (1930)
T KOG0161|consen 1644 LQRELEDAQRAREELLEQLAEAERRLAALQAELEEL-REKLEALERARRQAELELEELAERVNELNAQNSSLTAEKRKLE 1722 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccchhhHHHHHH
Confidence                    2111222223667777778888888887 7777777777777888888888888777666555555555556


Q ss_pred             HHHHHHHHHhhhhhcccccccchhhh
Q 006565          501 AKLDEMQQELTKARLNETALGSKLRA  526 (640)
Q Consensus       501 s~id~Leg~~~~~~~~et~l~~~~k~  526 (640)
                      ..|--|+..+...--+=-+.+-+.|.
T Consensus      1723 ~~i~~l~~elee~~~~~~~~~Er~kk 1748 (1930)
T KOG0161|consen 1723 AEIAQLQSELEEEQSELRAAEERAKK 1748 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            66665655554443333334444443

>TIGR00606 rad50 rad50

Probab=99.33  E-value=1.1e-06  Score=109.32  Aligned_cols=83  Identities=16%  Similarity=0.224  Sum_probs=45.6

Q ss_pred             HhHHhhHHhHHhhhhhhHHHHHHHHHHHhHhhHhhHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          148 EKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVA  227 (640)
Q Consensus       148 e~~~~l~k~le~~~~e~~ew~~kYe~~~~~~k~~~~~~AAGIsklK~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L  227 (640)
                      +++..+-...+.......+|+..|+....    +...+..-+.........+..++..+...+..+.+.+.+....+..+
T Consensus       702 ~~~~~~p~~~~~~~~~~~~~~~~~e~l~~----l~~~~~~~~~l~~~eip~l~~~l~~le~~l~~~~~~le~~~~~l~~~  777 (1311)
T TIGR00606       702 SKLRLAPDKLKSTESELKKKEKRRDEMLG----LAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTI  777 (1311)
T ss_pred             HHHhcchhhHHHHHHHHHHHHHHHHHHHH----hhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444566667777788888888554    22222222222234455556666666666666666666666665555


Q ss_pred             HHHHHHH
Q 006565          228 VREAKAA  234 (640)
Q Consensus       228 ~~QAKkA  234 (640)
                      ......+
T Consensus       778 ~~~~~~~  784 (1311)
T TIGR00606       778 MPEEESA  784 (1311)
T ss_pred             HHhHHHH
Confidence            5554444

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=99.30  E-value=4.3e-06  Score=94.86  Aligned_cols=298  Identities=21%  Similarity=0.227  Sum_probs=137.2

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhhhHHHhhhHHHHHHHHhHH-H
Q 006565          193 KSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAI-------VQERTSKEMQQREDVLREEFSST-L  264 (640)
Q Consensus       193 K~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAeek~a~-------L~er~~~~~q~r~~a~ree~~s~-l  264 (640)
                      +..-..+-.++..+-..|.+|++++.-++..|..+......|..++..       ...++. .+...+.++.+.+... +
T Consensus       115 k~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve-~L~~Ei~~lke~l~~~~~  193 (522)
T PF05701_consen  115 KAELESAREQYASAVAELDSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVE-ELSKEIIALKESLESAKL  193 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence            333444567778888888888888888888888887766666644444       333332 4444444444444432 1


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 006565          265 AEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQ-DKVY  343 (640)
Q Consensus       265 e~kE~kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~-ei~~  343 (640)
                      +-.++. +....-..+.++....+...+.+.+.++..+..++    ...+.|..++......+..+..++..... .+..
T Consensus       194 a~~eAe-ee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~----~~~k~Le~kL~~a~~~l~~Lq~El~~~~~~~l~~  268 (522)
T PF05701_consen  194 AHIEAE-EERIEIAAEREQDAEEWEKELEEAEEELEELKEEL----EAAKDLESKLAEASAELESLQAELEAAKESKLEE  268 (522)
T ss_pred             HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            111111 11111122333444445555666666666666655    44466666777777777777666666555 1111


Q ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          344 ---LEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTD  420 (640)
Q Consensus       344 ---L~ekl~se~er~ee~~~rleeaEee~kea~e~~~~areead~aq~E~~elQr~~~qrlaeIerl~~qIE~lEre~e~  420 (640)
                         ...........+..+...|+.+...+..+..+....+..++..+.+.......+.............|.+|+-++..
T Consensus       269 ~~~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~  348 (522)
T PF05701_consen  269 EAEAKEKSSELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNK  348 (522)
T ss_pred             hHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHH
Confidence               11112222223333334444444444444444444433333333333333333322222223333333333333333


Q ss_pred             hHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 006565          421 LTNEVNRIRESELEALSKVALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQ  497 (640)
Q Consensus       421 Le~E~~~l~~sEl~al~kv~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~l~e~nrrleal~~e~~  497 (640)
                      +..++......+-..-.....+-..++....+.+.+ ....+..+..+..+..+++..+..+..++.++.+..-++.
T Consensus       349 ~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~A-k~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~e  424 (522)
T PF05701_consen  349 TRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEA-KKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAE  424 (522)
T ss_pred             HHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333111111111333444444444444444 4444444444444444444444444444444444444433

Several sequences in this family are described as being myosin heavy chain-like.

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=99.30  E-value=1e-05  Score=101.96  Aligned_cols=407  Identities=18%  Similarity=0.265  Sum_probs=230.2

Q ss_pred             hhHHhHHHHHhhHHHHHHHHhHHhhhcchHHhHHhhHHhHHhhhhhhHHHHHHHHHHHhHhhHhhHHHhh---hHHHHhh
Q 006565          118 YDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCS---EIEVLKS  194 (640)
Q Consensus       118 ~e~~i~d~kk~~~~~~~~~~~l~~k~~s~ee~~~~l~k~le~~~~e~~ew~~kYe~~~~~~k~~~~~~AA---GIsklK~  194 (640)
                      .+..+.++..-.+...-+-..|..+.+.+++.|..+.++++.-+.....|...|....++-+.+.+..+.   .|+++-.
T Consensus       906 le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~k  985 (1930)
T KOG0161|consen  906 LEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSK  985 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6677777766777778888899999999999999999999999999999999999999999988888776   6888888


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhhhHHHhhhHHHHHHHHhHHHHHH
Q 006565          195 RSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAI-------VQERTSKEMQQREDVLREEFSSTLAEK  267 (640)
Q Consensus       195 Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAeek~a~-------L~er~~~~~q~r~~a~ree~~s~le~k  267 (640)
                      -++..+.++..+..++..-++.+....+.-..++.+..--+..+..       ++... ..+...    ...+...+..+
T Consensus       986 ekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~-rkle~e----l~~~~e~~~~~ 1060 (1930)
T KOG0161|consen  986 EKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAK-RKLEGE----LKDLQESIEEL 1060 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH----HHHhhhHHHHH
Confidence            8888999999999999888888877777666666555444432222       11111 122222    12233334445


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          268 EEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQK  347 (640)
Q Consensus       268 E~kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ek  347 (640)
                      ..+...+...+.-.+-.+..++..+.+....+..+...++.+..+|..|.+.++.-.......++....|..++..+.+.
T Consensus      1061 ~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~ 1140 (1930)
T KOG0161|consen 1061 KKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEE 1140 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55566666666666666666666666666667777777777777777777777777777777777777777777777666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Q 006565          348 YKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGK-SEFENLAMERMAVIERVQRQIESLERQKTDLTNEVN  426 (640)
Q Consensus       348 l~se~er~ee~~~rleeaEee~kea~e~~~~areead~aq~E~-~elQr~~~qrlaeIerl~~qIE~lEre~e~Le~E~~  426 (640)
                      ++...+......+--.-.+.++..+...........+..-.+. ...+....++..+++.+......++++...++.+..
T Consensus      1141 Lee~~~~t~~q~e~~~k~e~e~~~l~~~leee~~~~e~~~~~lr~~~~~~~~el~~qle~l~~~k~~lekek~~lq~e~~ 1220 (1930)
T KOG0161|consen 1141 LEEQGGTTAAQLELNKKREAEVQKLRRDLEEETLDHEAQIEELRKKHADSLAELQEQLEQLQKDKAKLEKEKSDLQREIA 1220 (1930)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6655322111111111111112222211111111111110000 111111233333333333333333333333333333


Q ss_pred             hhcHHHHHH-------HHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 006565          427 RIRESELEA-------LSK-VALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQS  498 (640)
Q Consensus       427 ~l~~sEl~a-------l~k-v~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~l~e~nrrleal~~e~~~  498 (640)
                      .+. .+++.       .++ ...++..+.+....++.+ ......+..+...+..++..+.-.+.++...+.++.--...
T Consensus      1221 ~l~-~ev~~~~~~k~~~e~~~k~~E~~l~elq~k~~~~-~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~ 1298 (1930)
T KOG0161|consen 1221 DLA-AELEQLSSEKKDLEKKDKKLEAQLSELQLKLDEQ-ERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQA 1298 (1930)
T ss_pred             HHH-HHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHH
Confidence            333 33322       222 333344444444444444 33222222333334444444444444444444444444444


Q ss_pred             HHHHHHHHHHHhhhhhcccccccchhhhhhccc
Q 006565          499 AQAKLDEMQQELTKARLNETALGSKLRAVSHGK  531 (640)
Q Consensus       499 lqs~id~Leg~~~~~~~~et~l~~~~k~~~~~k  531 (640)
                      +.+.|+.+...+....=.-++|.+.++...+-+
T Consensus      1299 ~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~ 1331 (1930)
T KOG0161|consen 1299 LESQLEELKRQLEEETREKSALENALRQLEHEL 1331 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555444444466777776665554

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=99.28  E-value=2e-05  Score=97.35  Aligned_cols=154  Identities=16%  Similarity=0.266  Sum_probs=79.8

Q ss_pred             HHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHhhhhcccCCchHH----HHHHHHHHhhhchHHHHHHHHHhHHHhHHH
Q 006565            9 SAIQSMERKLRAACHSSDASIDNVVKVLDGLISEYETSCHGPGKWQ----KLATFLQQSSEGPILDLVKRLIDQIGSERS   84 (640)
Q Consensus         9 ~~~~~me~~l~~ac~~~~a~~~~~~~~l~~~l~~y~~s~~G~g~~~----k~~~~L~~~l~~~~~d~~~~~~~~i~~~~~   84 (640)
                      ..++.+++ |-++-|...-++|.|-..|=..+.+.-..-++|.+-+    .+..|+.+.=...-.+=.+.-|..+....+
T Consensus       178 ~~~~hI~k-li~~vln~~~~~d~iK~mIi~i~~e~~~~~~~~~~~~~~~~~i~~W~~~~~~~~~~~~~r~~~~~l~~~~~  256 (1201)
T PF12128_consen  178 HQYQHIEK-LINAVLNKKLDFDFIKNMIIAILEEEIADGVSPPKSRLKKNDIDDWLRDIRASQGFEKVRPEFDKLQQQYR  256 (1201)
T ss_pred             ccccChHH-HHHHHHhccccHHHHHHHHHHHHHhhccccccchhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35777887 6677788889999998888888888555666775544    566666655221111223333444444433


Q ss_pred             HHHhhhcCchhHHHHHHHHHHhhHHh----HHHHHHHhhHHhHHHHHhhHHHHHHHHhHHhhhcchHHhHHhhHHhHHhh
Q 006565           85 SLMLKYRSIEDNMKLLKKQLEDSERY----KSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSL  160 (640)
Q Consensus        85 ~l~~~c~s~~~k~~~~~k~le~~~k~----~~~~~k~~e~~i~d~kk~~~~~~~~~~~l~~k~~s~ee~~~~l~k~le~~  160 (640)
                      .|..    .+..+..++-.|-+.+..    ...+.......-..+.++.+.+......+...++.+...+..+...|+.+
T Consensus       257 ~l~~----~~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~~l~~~~~~L~~i  332 (1201)
T PF12128_consen  257 QLQA----LEQQLCHLHAELNADEQQLEQEQPELKEELNELNEELEKLEDEIKELRDELNKELSALNADLARIKSELDEI  332 (1201)
T ss_pred             HHHH----HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3221    122333333333222211    11222222222233345555555555555555556666666666666665


Q ss_pred             hhhhHHH
Q 006565          161 KNEISDW  167 (640)
Q Consensus       161 ~~e~~ew  167 (640)
                      ......|
T Consensus       333 ~~~~~~y  339 (1201)
T PF12128_consen  333 EQQKKDY  339 (1201)
T ss_pred             HHHHHHH
Confidence            5554444

>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma

Probab=99.23  E-value=2.3e-10  Score=120.54  Aligned_cols=155  Identities=23%  Similarity=0.362  Sum_probs=134.3

Q ss_pred             chhhhhhHHHHH----HHHHHHHhcCCCCcchhhHHHHHHHHHHhhhhcccCCchHHHHHHHHHHhhhchHHHHHHHHHh
Q 006565            2 EADIRCSSAIQS----MERKLRAACHSSDASIDNVVKVLDGLISEYETSCHGPGKWQKLATFLQQSSEGPILDLVKRLID   77 (640)
Q Consensus         2 ea~~~c~~~~~~----me~~l~~ac~~~~a~~~~~~~~l~~~l~~y~~s~~G~g~~~k~~~~L~~~l~~~~~d~~~~~~~   77 (640)
                      .+...|.+.|+.    |+++|+.+|.+|++.++.+++.++.++..|+..   ||||.+...||++||.+           
T Consensus       119 ~s~~~C~~~l~~l~~~le~~l~~~~~~~~gg~~~~~~~~~~~~~~Y~~~---p~Kg~ka~evL~~fl~~-----------  184 (297)
T PF02841_consen  119 ASEKKCQALLQELFQPLEEKLKQGCYSKPGGYQLFLKELDELEKEYEQE---PGKGVKAEEVLQEFLQS-----------  184 (297)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCTTTSSTTHHHHHHHHHHHHHHHHHHS---S---TTHHHHHHHHHHH-----------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHhhc---CCCCccHHHHHHHHHHH-----------
Confidence            356789999999    999999999999999999999999999999998   99999999999999987           


Q ss_pred             HHHhHHHHHHhhhcCchhHHHHHHHHHHhhHHhHHHHHHHhhHHhHHHHHhhHHHHHHHHhHHhhhcchHHhHHhhHHhH
Q 006565           78 QIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTV  157 (640)
Q Consensus        78 ~i~~~~~~l~~~c~s~~~k~~~~~k~le~~~k~~~~~~k~~e~~i~d~kk~~~~~~~~~~~l~~k~~s~ee~~~~l~k~l  157 (640)
                                  +.+....|-...+.|.+.++....++.+++.+..+.+.+.+........++.+++++++.+..|..+|
T Consensus       185 ------------~~~~~~~ilq~d~~L~~~ek~~~~~~~k~e~~e~e~~~l~e~~~~~~~~le~~~~~~ee~~~~L~ekm  252 (297)
T PF02841_consen  185 ------------KESMENSILQADQQLTEKEKEIEEEQAKAEAAEKEKEKLEEKQKEQEQMLEQQERSYEEHIKQLKEKM  252 (297)
T ss_dssp             ------------CHHHHHHHHHH-TTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                        44555566667778888889999999999999999999999999999999999999999999999998


Q ss_pred             HhhhhhhHHHHHHHHHHHhHhhHhhHHH
Q 006565          158 DSLKNEISDWKRKYDQVLTKQKAMEDQV  185 (640)
Q Consensus       158 e~~~~e~~ew~~kYe~~~~~~k~~~~~~  185 (640)
                      +..+.   .|..-|+..+..+......+
T Consensus       253 e~e~~---~~~~e~e~~l~~k~~eq~~~  277 (297)
T PF02841_consen  253 EEERE---QLLQEQERLLEQKLQEQEEL  277 (297)
T ss_dssp             HHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence            88666   89999999988776665554

GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=99.22  E-value=1.3e-05  Score=94.16  Aligned_cols=194  Identities=13%  Similarity=0.209  Sum_probs=148.7

Q ss_pred             HHhhHHHHHHHHhHHhhhcchHHhHHhhHHhHHhhhhhhHHHHHHHHHHHhHhhHhhHHHhhhHHHHhhhhHHHHHHHHH
Q 006565          126 KKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAA  205 (640)
Q Consensus       126 kk~~~~~~~~~~~l~~k~~s~ee~~~~l~k~le~~~~e~~ew~~kYe~~~~~~k~~~~~~AAGIsklK~Rkkeae~RL~a  205 (640)
                      +++++.-.+.|++|..-..-+++.+..|...++.+...                  -+....++..|++-...+-.|++.
T Consensus       230 q~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~------------------r~~~~k~le~~~s~~~~mK~k~d~  291 (775)
T PF10174_consen  230 QTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEAD------------------RDRLDKQLEVYKSHSLAMKSKMDR  291 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc------------------hHHHHHHHHHHHhhHHHHHHHHHH
Confidence            55666666666666666666666666666555544443                  233345666777777777778999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          206 AREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCL  285 (640)
Q Consensus       206 t~enL~RVkDel~Ewkrky~~L~~QAKkAeek~a~L~er~~~~~q~r~~a~ree~~s~le~kE~kie~~k~ei~~aEq~l  285 (640)
                      +..+|.+-.-++.....+++++.+|..-....+.+++..+. ..+.+    .+-+++.++.+..+++.+...+..+...+
T Consensus       292 ~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~-~ke~~----~~~Lqsdve~Lr~rle~k~~~l~kk~~~~  366 (775)
T PF10174_consen  292 LKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLR-AKEQE----AEMLQSDVEALRFRLEEKNSQLEKKQAQI  366 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-HHHHH----HHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998884 88888    88888888888888888888888888888


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          286 TTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKV  342 (640)
Q Consensus       286 a~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~  342 (640)
                      ..++.+..-+.++|..+-..+...+..+..|..+++.+...+.....++..+...+.
T Consensus       367 ~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~  423 (775)
T PF10174_consen  367 EKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLS  423 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            888888877777777777777777777777777777777777666666666666555

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=99.21  E-value=5.2e-05  Score=93.54  Aligned_cols=105  Identities=17%  Similarity=0.316  Sum_probs=51.3

Q ss_pred             hhHHHHHHHHhHHhhhcchHHhHHhhHHhHHhhhhhhHHHHHHHHHHHhHhhHhhHHH-----------------hhhHH
Q 006565          128 LADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQV-----------------CSEIE  190 (640)
Q Consensus       128 ~~~~~~~~~~~l~~k~~s~ee~~~~l~k~le~~~~e~~ew~~kYe~~~~~~k~~~~~~-----------------AAGIs  190 (640)
                      ....+..+.+.+...+..+......+..+++..+.....-..+++....+...+....                 .+.+.
T Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  456 (1163)
T COG1196         377 LFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLE  456 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444444444444444444444444433333333222                 22333


Q ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          191 VLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAK  232 (640)
Q Consensus       191 klK~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L~~QAK  232 (640)
                      .++.+...++..+......+.++.+.+.+.+..++.+...+.
T Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~  498 (1163)
T COG1196         457 ELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQR  498 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            344444555555555555666666666666666666666544

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=99.19  E-value=4.3e-05  Score=90.92  Aligned_cols=468  Identities=18%  Similarity=0.260  Sum_probs=280.4

Q ss_pred             CcchhhHHHHHHHHHHhhhhcccCCchHH---HHHHHHHHhhhchHHHHHHHHH--hHHHhHHHHHHhhhcCchhHHHHH
Q 006565           26 DASIDNVVKVLDGLISEYETSCHGPGKWQ---KLATFLQQSSEGPILDLVKRLI--DQIGSERSSLMLKYRSIEDNMKLL  100 (640)
Q Consensus        26 ~a~~~~~~~~l~~~l~~y~~s~~G~g~~~---k~~~~L~~~l~~~~~d~~~~~~--~~i~~~~~~l~~~c~s~~~k~~~~  100 (640)
                      +-.|.+=..=||.+|.-|+.-+--|.-|=   +=-.||+++=-+-..-++-+..  ..|-.-++.....-.+.-+-|+++
T Consensus       154 grvVStKk~dl~~vv~~f~I~veNP~~~lsQD~aR~FL~~~~p~dkYklfmkaT~L~qi~~~~~~~~~~~~~~~~~i~~~  233 (1074)
T KOG0250|consen  154 GRVVSTKKEDLDTVVDHFNIQVENPMFVLSQDAARSFLANSNPKDKYKLFMKATQLEQITESYSEIMESLDHAKELIDLK  233 (1074)
T ss_pred             CccccccHHHHHHHHHHhCcCCCCcchhhcHHHHHHHHhcCChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33455555678999999999999999995   7778998873333322222221  233333333322222333333333


Q ss_pred             HHHHHhhHHhHHHHHHHhh-------------HHhHHH-HHhhHHHHHHHHhHHhhhcchHHhHHhhHHhHHhhhhhhHH
Q 006565          101 KKQLEDSERYKSEYLKRYD-------------DAINDK-KKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISD  166 (640)
Q Consensus       101 ~k~le~~~k~~~~~~k~~e-------------~~i~d~-kk~~~~~~~~~~~l~~k~~s~ee~~~~l~k~le~~~~e~~e  166 (640)
                      ..-|..+.|.-.+++..+.             .---.+ -....++..+++++...+.-.++++..++..++.....-.+
T Consensus       234 ~e~i~~l~k~i~e~~e~~~~~~~~e~~~~~l~~Lk~k~~W~~V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~  313 (1074)
T KOG0250|consen  234 EEEIKNLKKKIKEEEEKLDNLEQLEDLKENLEQLKAKMAWAWVNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEE  313 (1074)
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333322             111111 23456777888888899999999999999998887777666


Q ss_pred             HHHHHHHHHhHhhHhhHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006565          167 WKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTS  246 (640)
Q Consensus       167 w~~kYe~~~~~~k~~~~~~AAGIsklK~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAeek~a~L~er~~  246 (640)
                      +..+|-    +..       |.|..++--.......+..++++++-++-+..+++.+|....+.-++.......+..++.
T Consensus       314 ~r~k~t----eie-------a~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~  382 (1074)
T KOG0250|consen  314 ARQKLT----EIE-------AKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIA  382 (1074)
T ss_pred             Hhhhhh----HHH-------HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            664443    233       334444444555566777777788888888888888888888877777777777777765


Q ss_pred             HHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHH
Q 006565          247 KEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAK  326 (640)
Q Consensus       247 ~~~q~r~~a~ree~~s~le~kE~kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~e  326 (640)
                       ..+.+.   ......++++.+++++.+..++...+..++.++.+++....+++.-+.+....+..+..|..+.......
T Consensus       383 -~~~~~~---~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~  458 (1074)
T KOG0250|consen  383 -DLEKQT---NNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEE  458 (1074)
T ss_pred             -HHHHHH---HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             555551   3555666666677777777777777777777766666666666666655555555555555555444444


Q ss_pred             HHHHHH-----------HHHHHHHHHHHHHHHH-------------------HHHH------------------------
Q 006565          327 AQSFER-----------EARIMEQDKVYLEQKY-------------------KSEF------------------------  352 (640)
Q Consensus       327 ies~e~-----------el~~L~~ei~~L~ekl-------------------~se~------------------------  352 (640)
                      +..+..           ..-.|-..|.+-.-.+                   ...-                        
T Consensus       459 l~~lk~~k~dkvs~FG~~m~~lL~~I~r~~~~f~~~P~GPlG~~Vtl~~~KWa~aIE~~L~n~lnaFiv~sh~D~~~Lr~  538 (1074)
T KOG0250|consen  459 LKDLKKTKTDKVSAFGPNMPQLLRAIERRKRRFQTPPKGPLGKYVTLKEPKWALAIERCLGNLLNAFIVTSHKDARILRA  538 (1074)
T ss_pred             HHHHHhcccchhhhcchhhHHHHHHHHHHHhcCCCCCCCCccceeEecCcHHHHHHHHHHHHhhhhheeCCHhhHHHHHH
Confidence            333321           2222222232221110                   0000                        


Q ss_pred             --------------------------------------------------------------------------------
Q 006565          353 --------------------------------------------------------------------------------  352 (640)
Q Consensus       353 --------------------------------------------------------------------------------  352 (640)
                                                                                                      
T Consensus       539 i~~~~~~~~~~ptIvvs~~~~~~y~~~~~p~~~~pTil~~le~ddp~V~N~LID~s~iE~~lLiEdk~Ea~~~m~s~~~p  618 (1074)
T KOG0250|consen  539 IMRRLKIPGNRPTIVVSSFTPFDYSVGRNPGYEFPTILDALEFDDPEVLNVLIDKSGIEQVLLIEDKKEAREFMQSDKPP  618 (1074)
T ss_pred             HHHHcCCCCCCCcEEEecCCccccccccCCCCCCCceeeeeecCChHHHHHhhhhccceeEEEecchHHHHHHHhcCCCC
Confidence                                                                                            


Q ss_pred             ------------------------------HH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 006565          353 ------------------------------ER-----FEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLA  397 (640)
Q Consensus       353 ------------------------------er-----~ee~~~rleeaEee~kea~e~~~~areead~aq~E~~elQr~~  397 (640)
                                                    -+     -......++.++.++.....+.-..+-..+.+.....++++..
T Consensus       619 ~n~~~aytldg~~~~~~g~~~~~ySt~~~~~r~~~~~~~s~d~~ie~le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~  698 (1074)
T KOG0250|consen  619 ANVTKAYTLDGRQIFAGGPNYRVYSTRGTRARRPGVDEFSFDDEIEDLEREASRLQKEILELENQRREAEKNLEELEKKL  698 (1074)
T ss_pred             ccceeeeccCccccccCCCCcceeccCCCCCCCccccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                          00     1122344444555555555544444444444455555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHH--HHhhhcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 006565          398 MERMAVIERVQRQIESLERQKTDLTN--EVNRIRESELEALSK-VALLEARVEEREKEIESLLESNNEQRASTVKKLEDL  474 (640)
Q Consensus       398 ~qrlaeIerl~~qIE~lEre~e~Le~--E~~~l~~sEl~al~k-v~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~  474 (640)
                      .++-.+|..+++.+-....++..|..  +...+..+.++.+.. +...+..|++-+...+.+ +...+++....+.+...
T Consensus       699 ~~l~~~~~q~~~~~~~~~~em~el~n~~e~~~~~~~~~~~l~~ei~~~~~eIe~~~~~~e~l-~~e~e~~~~e~~e~~~~  777 (1074)
T KOG0250|consen  699 RELSEHIEQIKRRIRKKRAEMTELKNTAEEKQVDISKLEDLAREIKKKEKEIEEKEAPLEKL-KEELEHIELEAQELEEY  777 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence            55555555555555555555555555  233344334555555 666666777777777877 88888888888999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 006565          475 LESERRSRAAANAMAERLSLEVQSAQAKLDEMQQE  509 (640)
Q Consensus       475 le~~re~l~e~nrrleal~~e~~~lqs~id~Leg~  509 (640)
                      .+..+..+.....+++++..++....+++.+.++.
T Consensus       778 ~~~~~~~l~~e~~~l~~l~~el~~r~dk~~s~e~~  812 (1074)
T KOG0250|consen  778 YAAGREKLQGEISKLDALKEELKLREDKLRSAEDE  812 (1074)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhh
Confidence            99999999999999999999999999988884443

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=99.12  E-value=3.8e-05  Score=95.66  Aligned_cols=356  Identities=19%  Similarity=0.267  Sum_probs=220.1

Q ss_pred             hhHHHHHHHHHHhhHHhHHHHHHHhhHHhHHHHHhhHHHHHHHHhHHhhhcchHHhHHhhHHhHHhhhhhhHH---HHHH
Q 006565           94 EDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISD---WKRK  170 (640)
Q Consensus        94 ~~k~~~~~k~le~~~k~~~~~~k~~e~~i~d~kk~~~~~~~~~~~l~~k~~s~ee~~~~l~k~le~~~~e~~e---w~~k  170 (640)
                      +..+.-+-..|+.....+..-.+-++..|.++++-.-.+.+....+.....--.+|+..|++.+|..+++...   -...
T Consensus       635 e~~l~qLe~~le~~~~E~~~~~~~l~e~~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~  714 (1822)
T KOG4674|consen  635 EKRLRQLENELESYKKEKRENLKKLQEDFDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEVETLEERNKN  714 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555555557777778889999999999999999999999999999999999999999999999994   4455


Q ss_pred             HHHHHhHhhHhhHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHh
Q 006565          171 YDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQ  250 (640)
Q Consensus       171 Ye~~~~~~k~~~~~~AAGIsklK~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAeek~a~L~er~~~~~q  250 (640)
                      |...|.+++.....++.....-.+....+...+...++.=....+-=.-....|..|......-...+..++...+ ..+
T Consensus       715 l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~-~~e  793 (1822)
T KOG4674|consen  715 LQSTISKQEQTVHTLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQKN-ELE  793 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence            6677777776555566666555555555555555554444444444444455666677666666677778888886 888


Q ss_pred             hhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHH
Q 006565          251 QREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLEL----KAAESKMRSYEVEISSQKLETKELSEKLEAVNAK  326 (640)
Q Consensus       251 ~r~~a~ree~~s~le~kE~kie~~k~ei~~aEq~la~~q~eL----~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~e  326 (640)
                      .-+.|.+..+.+++..++..+..++.++......+..++..+    .++...|.....++..+...++.+...+..+..+
T Consensus       794 ~s~~~~k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k  873 (1822)
T KOG4674|consen  794 ESEMATKDKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIK  873 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888999999999999999999999999988888888875433    5555555555555555555555544444444444


Q ss_pred             HHHHHHHHHHHHHHHHHH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          327 AQSFEREARIMEQDKVYL--------------------------EQKYKSEFERFEEVQERCKVAEKEAKKATELADRER  380 (640)
Q Consensus       327 ies~e~el~~L~~ei~~L--------------------------~ekl~se~er~ee~~~rleeaEee~kea~e~~~~ar  380 (640)
                      +..+++++.........+                          ..++......+......+...+..+.......+..+
T Consensus       874 ~~eL~k~l~~~~~~~~~l~~~~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~  953 (1822)
T KOG4674|consen  874 LSELEKRLKSAKTQLLNLDSKSSNEDATILEDTLRKELEEITDLKEELTDALSQIREYQEEYSSLEQSLESVKSELDETR  953 (1822)
T ss_pred             HHHHHHHHHHhHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444443333333                          333333333344444444444444444444444444


Q ss_pred             HHHHHHHh----hHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhHHHHhhhcHHHHHHHHH-HHHHHHHHHHHHH
Q 006565          381 AEAAAARK----GKSEFENLAMERMAVIERVQ----RQIESLERQKTDLTNEVNRIRESELEALSK-VALLEARVEEREK  451 (640)
Q Consensus       381 eead~aq~----E~~elQr~~~qrlaeIerl~----~qIE~lEre~e~Le~E~~~l~~sEl~al~k-v~~lE~~vee~e~  451 (640)
                      ..+++...    +...+...++.+.++|..+.    ..+...+.+..++.+++..++ +|+..+.. .......+.....
T Consensus       954 ~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~~k~~e~~~~~~~~e~~sl~-ne~~~~~~~~s~~~~~~~~~k~ 1032 (1822)
T KOG4674|consen  954 LELEAKIESLHKKITSLEEELSELEKEIENLREELELSTKGKEDKLLDLSREISSLQ-NELKSLLKAASQANEQIEDLQN 1032 (1822)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence            44433322    22223333344444444443    333444555555666666666 55444444 4444444444433

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=99.11  E-value=9.1e-05  Score=87.31  Aligned_cols=187  Identities=15%  Similarity=0.203  Sum_probs=113.6

Q ss_pred             hHHhHHHHHhhHHHHHHHHhHHhhhcchHHhHHhhHHhHHhhhhhhHHHHHHHHHHHhHhhHhhHHHhhhHHHHhhhhHH
Q 006565          119 DDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTA  198 (640)
Q Consensus       119 e~~i~d~kk~~~~~~~~~~~l~~k~~s~ee~~~~l~k~le~~~~e~~ew~~kYe~~~~~~k~~~~~~AAGIsklK~Rkke  198 (640)
                      +..|..+-|-+.+...++..|+..+...+.-...+.|+|+.-+.+..--+.||+.+=-+-.    .--+.|..++++...
T Consensus       237 d~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~----rk~~E~~~~qt~l~~  312 (775)
T PF10174_consen  237 DTKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELS----RKKSELEALQTRLET  312 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence            3455566566666899999999999988888999999999999999999999888644322    223445555566666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 006565          199 AEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKI  278 (640)
Q Consensus       199 ae~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAeek~a~L~er~~~~~q~r~~a~ree~~s~le~kE~kie~~k~ei  278 (640)
                      +..-....+..++-.++-+.--...+..|.....+..-++..-...++ ..+..    ...+..+.++...+|..++..+
T Consensus       313 ~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~-kk~~~----~~~~qeE~~~~~~Ei~~l~d~~  387 (775)
T PF10174_consen  313 LEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLE-KKQAQ----IEKLQEEKSRLQGEIEDLRDML  387 (775)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence            666666666666666666666666666666666555555555555554 44444    3444444444444444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHH
Q 006565          279 EHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETK  314 (640)
Q Consensus       279 ~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~  314 (640)
                      ...+.++..++..+..++..++.....+..+..++.
T Consensus       388 d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~  423 (775)
T PF10174_consen  388 DKKERKINVLQKKIENLEEQLREKDRQLDEEKERLS  423 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            444444444444444444444444444444443333

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=99.05  E-value=9.6e-05  Score=84.07  Aligned_cols=164  Identities=16%  Similarity=0.206  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 006565          343 YLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLT  422 (640)
Q Consensus       343 ~L~ekl~se~er~ee~~~rleeaEee~kea~e~~~~areead~aq~E~~elQr~~~qrlaeIerl~~qIE~lEre~e~Le  422 (640)
                      .+...+.+....++.....+..+..+.......+...+.++...+.+...+++........|..|...+.....+++...
T Consensus       278 ~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~  357 (522)
T PF05701_consen  278 ELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAK  357 (522)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHH
Confidence            33333444444444444444444444444444444444444444444444444444444444444444444444444444


Q ss_pred             HHHhhhcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 006565          423 NEVNRIRESELEALSK-VALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQA  501 (640)
Q Consensus       423 ~E~~~l~~sEl~al~k-v~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~l~e~nrrleal~~e~~~lqs  501 (640)
                      ..-.+.+ .....+.. +..+....+....+.+.. ..........++.....+......|..+.+.+++.+.--...-.
T Consensus       358 ~~e~~~k-~~~~~l~~~Lqql~~Eae~Ak~ea~~~-~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKasEa~Ala  435 (522)
T PF05701_consen  358 AEEEKAK-EAMSELPKALQQLSSEAEEAKKEAEEA-KEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAKASEALALA  435 (522)
T ss_pred             hhhcchh-hhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4443333 33333444 444444444444444433 44444444444444444444444444444444444443333444


Q ss_pred             HHHHHHH
Q 006565          502 KLDEMQQ  508 (640)
Q Consensus       502 ~id~Leg  508 (640)
                      .|..|.+
T Consensus       436 ~ik~l~e  442 (522)
T PF05701_consen  436 EIKALSE  442 (522)
T ss_pred             HHHHhhc
Confidence            4443333

Several sequences in this family are described as being myosin heavy chain-like.

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=99.03  E-value=3.8e-07  Score=93.44  Aligned_cols=227  Identities=20%  Similarity=0.223  Sum_probs=115.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          270 EMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYK  349 (640)
Q Consensus       270 kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~  349 (640)
                      ++..++.++..++..+..+...|..........+.++..+..+|..|...++.+...+.....++..+....++....+.
T Consensus         2 K~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k   81 (237)
T PF00261_consen    2 KIQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARK   81 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45556666666666666666666666666666666666666666666666666666666666666666666666655566


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhc
Q 006565          350 SEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIR  429 (640)
Q Consensus       350 se~er~ee~~~rleeaEee~kea~e~~~~areead~aq~E~~elQr~~~qrlaeIerl~~qIE~lEre~e~Le~E~~~l~  429 (640)
                      ....+......++..++..++.+...+..+-..++       ++.+.+......++++....+.++..+..|+.++..+.
T Consensus        82 ~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~-------E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~  154 (237)
T PF00261_consen   82 VLENREQSDEERIEELEQQLKEAKRRAEEAERKYE-------EVERKLKVLEQELERAEERAEAAESKIKELEEELKSVG  154 (237)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH-------HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHH
Confidence            66666666666666666665555555555533333       33444444444444444444444444444444444444


Q ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 006565          430 ESELEALSK-VALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDE  505 (640)
Q Consensus       430 ~sEl~al~k-v~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~l~e~nrrleal~~e~~~lqs~id~  505 (640)
                       ..+..++- ......+.+..+..|..| ...+..........+..+..+...+......+..-+..+..++..+|.
T Consensus       155 -~~lk~lE~~~~~~~~re~~~e~~i~~L-~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~  229 (237)
T PF00261_consen  155 -NNLKSLEASEEKASEREDEYEEKIRDL-EEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQ  229 (237)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHhhhhhhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             44333333 333333333333333333 333333333333333333333333333333333333333344444433

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PRK04863 mukB cell division protein MukB; Provisional

Probab=99.01  E-value=4.3e-05  Score=95.65  Aligned_cols=149  Identities=15%  Similarity=0.188  Sum_probs=98.6

Q ss_pred             HHHHHHHHhHHHhHHHHHHhhhcCchhHHHHHHHHHHhhHHhHHHHHHHhhHHhHHHHHhhHHHHHHHHh-HHhhhcchH
Q 006565           69 LDLVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINN-LQGENISLR  147 (640)
Q Consensus        69 ~d~~~~~~~~i~~~~~~l~~~c~s~~~k~~~~~k~le~~~k~~~~~~k~~e~~i~d~kk~~~~~~~~~~~-l~~k~~s~e  147 (640)
                      .+|...+++.     -.+...|+|++++=. +-+.+...         -|-+|+.+..+-+-+|--..+. +..=+..|.
T Consensus       172 ~~Y~~~Ll~q-----G~f~~~L~a~~dR~k-F~kLf~ta---------iy~~i~~~i~~fl~~yll~e~~~v~~~i~~m~  236 (1486)
T PRK04863        172 TDYHSLMFDL-----GIIPRRLRSSSDRSK-FYRLIEAS---------LYGGISSAITRSLRDYLLPENSGVRKAFQDME  236 (1486)
T ss_pred             HHHHHHHHHC-----CCchhhhhccchHHH-HHHHHHHH---------HHhhHHHhHHHHHHHHcCCCChhhhHHHHHHH
Confidence            5666666644     335666666655554 34544443         3556666666666666555444 443355555


Q ss_pred             HhHHhhHHhHHhhhhhh------------------HHHHHHHHHHHhHhhHhhHHHhhhHHHHhhhhHHHHHHHHHHHHH
Q 006565          148 EKSSSLSKTVDSLKNEI------------------SDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQ  209 (640)
Q Consensus       148 e~~~~l~k~le~~~~e~------------------~ew~~kYe~~~~~~k~~~~~~AAGIsklK~Rkkeae~RL~at~en  209 (640)
                      +-+-...-+|++.+.-.                  ++|.+-=+    +....=+.+    +.|+.++.+++.+|..+..+
T Consensus       237 ~~l~~~r~t~~~~~~tq~drdlFk~lI~~~~~~~aad~~r~~e----ERR~liEEA----ag~r~rk~eA~kkLe~tE~n  308 (1486)
T PRK04863        237 AALRENRMTLEAIRVTQSDRDLFKHLITESTNYVAADYMRHAN----ERRVHLEEA----LELRRELYTSRRQLAAEQYR  308 (1486)
T ss_pred             HHHHHHHHHHHHHHhCccHHHHHHHHhhhhhhhhHHHHhhCHH----HHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence            55556666666665443                  44544322    344444444    55779999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          210 ALSAQEEVEEWKRKYGVAVREAKAALEKAAI  240 (640)
Q Consensus       210 L~RVkDel~Ewkrky~~L~~QAKkAeek~a~  240 (640)
                      +.++.|++.|+..++..|..|+.++..-...
T Consensus       309 L~rI~diL~ELe~rL~kLEkQaEkA~kyleL  339 (1486)
T PRK04863        309 LVEMARELAELNEAESDLEQDYQAASDHLNL  339 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999855443

>PRK01156 chromosome segregation protein; Provisional

Probab=98.99  E-value=0.00029  Score=84.57  Aligned_cols=28  Identities=14%  Similarity=0.261  Sum_probs=11.4

Q ss_pred             hHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 006565          301 SYEVEISSQKLETKELSEKLEAVNAKAQ  328 (640)
Q Consensus       301 ~~e~ei~~le~el~~L~ekle~~~~eie  328 (640)
                      .+..++..++.++..|..+...+..++.
T Consensus       473 ~~~~~i~~l~~~i~~l~~~~~~l~~~~~  500 (895)
T PRK01156        473 HYNEKKSRLEEKIREIEIEVKDIDEKIV  500 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444433333333

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=98.91  E-value=0.00082  Score=84.29  Aligned_cols=168  Identities=17%  Similarity=0.239  Sum_probs=118.2

Q ss_pred             hHHHHHHHHHHhhHHhHHHHHHHhh---HHhHHH----HHhhHHHHHHHHhHHhhhcchHHhHHhhHHhHHhhhhhhHHH
Q 006565           95 DNMKLLKKQLEDSERYKSEYLKRYD---DAINDK----KKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDW  167 (640)
Q Consensus        95 ~k~~~~~k~le~~~k~~~~~~k~~e---~~i~d~----kk~~~~~~~~~~~l~~k~~s~ee~~~~l~k~le~~~~e~~ew  167 (640)
                      .++..+..+|..+......|+.-|.   .++.-.    -..--.+.+++..+..+..|+|++++-|.+.+.....++.--
T Consensus       912 eq~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~  991 (1822)
T KOG4674|consen  912 EEITDLKEELTDALSQIREYQEEYSSLEQSLESVKSELDETRLELEAKIESLHKKITSLEEELSELEKEIENLREELELS  991 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            4667777777777777777776553   333332    223345677888888899999999888888888888777555


Q ss_pred             HHHHHHHHhHhhHhhHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 006565          168 KRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSK  247 (640)
Q Consensus       168 ~~kYe~~~~~~k~~~~~~AAGIsklK~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAeek~a~L~er~~~  247 (640)
                      .+.-+.-+.+..+.-+.+-.....+....+++...+..++.++.-....+..-..+|+.=.-+...+-..+..+..... 
T Consensus       992 ~k~~e~~~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~k~dl~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~- 1070 (1822)
T KOG4674|consen  992 TKGKEDKLLDLSREISSLQNELKSLLKAASQANEQIEDLQNDLKTETEQLRKAQSKYESELVQHADLTQKLIKLREEFA- 1070 (1822)
T ss_pred             ccchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            5555555555555555566666667777777777777778888777777777788998888888888877777777764 


Q ss_pred             HHhhhHHHHHHHHhHH
Q 006565          248 EMQQREDVLREEFSST  263 (640)
Q Consensus       248 ~~q~r~~a~ree~~s~  263 (640)
                      ..++.+-.|+..+...
T Consensus      1071 ~~~~e~~~Lk~~~~~~ 1086 (1822)
T KOG4674|consen 1071 KCNDELLKLKKSRESR 1086 (1822)
T ss_pred             HHHHHHHHHHhhHHHH
Confidence            6666655555555444

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=98.82  E-value=7.9e-06  Score=83.79  Aligned_cols=29  Identities=21%  Similarity=0.302  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006565          465 ASTVKKLEDLLESERRSRAAANAMAERLS  493 (640)
Q Consensus       465 ~~~l~~le~~le~~re~l~e~nrrleal~  493 (640)
                      ..+|..++..|...+.........++...
T Consensus       203 e~~id~le~eL~~~k~~~~~~~~eld~~l  231 (237)
T PF00261_consen  203 EKEIDRLEDELEKEKEKYKKVQEELDQTL  231 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555555555555554433

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PRK01156 chromosome segregation protein; Provisional

Probab=98.81  E-value=0.0012  Score=79.42  Aligned_cols=6  Identities=33%  Similarity=0.634  Sum_probs=2.7

Q ss_pred             ccCCch
Q 006565           47 CHGPGK   52 (640)
Q Consensus        47 ~~G~g~   52 (640)
                      .+|+|.
T Consensus       134 ~~~Qg~  139 (895)
T PRK01156        134 FVGQGE  139 (895)
T ss_pred             EEeccc
Confidence            344444

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=98.81  E-value=0.00026  Score=84.79  Aligned_cols=328  Identities=17%  Similarity=0.210  Sum_probs=180.2

Q ss_pred             HHHHHHHhHHhhhcchHHhHHh---hHHhHHhhhhhhHHHHHHHHHHHhHhhHhhHHHhhhHHHHhhhhHHHHHHHHHHH
Q 006565          131 DYTSRINNLQGENISLREKSSS---LSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAR  207 (640)
Q Consensus       131 ~~~~~~~~l~~k~~s~ee~~~~---l~k~le~~~~e~~ew~~kYe~~~~~~k~~~~~~AAGIsklK~Rkkeae~RL~at~  207 (640)
                      ..+.|...|--.|+--+-++..   -.+.||..+.++.+|..+.-+..--+-          -.++-...++.+|+....
T Consensus       271 ~~~~rv~~L~e~~sek~~~~k~~e~ek~~lE~~k~~al~fL~kenel~~~~~----------~~~q~~~~~~~~ki~~~~  340 (1293)
T KOG0996|consen  271 ELMRRVERLNEDRSEKENRVKLVEKEKKALEGPKNEALEFLKKENELFRKKN----------KLCQYILYESRAKIAEMQ  340 (1293)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
Confidence            3333444444344333333333   234566666677777777666553222          234555566777888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          208 EQALSAQEEVEEWKRKYGVAVREAKAAL-EKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLT  286 (640)
Q Consensus       208 enL~RVkDel~Ewkrky~~L~~QAKkAe-ek~a~L~er~~~~~q~r~~a~ree~~s~le~kE~kie~~k~ei~~aEq~la  286 (640)
                      +.+......+-+...+.++..+.-..-. ..-..+.++.                   ....++....+.++...+.+-.
T Consensus       341 ~~~~~~~e~lk~~~ek~~~e~~~~~~k~e~~~~~~~e~~-------------------~~~kn~~~~~k~~~~~~e~~~v  401 (1293)
T KOG0996|consen  341 EELEKIEEGLKDENEKFDIESNEEVEKNEAVKKEIKERA-------------------KELKNKFESLKKKFQDLEREDV  401 (1293)
T ss_pred             HHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888888777775554322211 1111122222                   1222234444445555555555


Q ss_pred             HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q 006565          287 TLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYL----EQKYKSEFERFEEVQERC  362 (640)
Q Consensus       287 ~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L----~ekl~se~er~ee~~~rl  362 (640)
                      ..+..|.-..++|+.++.++......+..+..-.+.....++....++..|.......    .+.+.+..++-+-.....
T Consensus       402 k~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~  481 (1293)
T KOG0996|consen  402 KREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEI  481 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence            5555555556666666666666666666665555555555555555555554444333    333334444444555666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHH-HHH
Q 006565          363 KVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSK-VAL  441 (640)
Q Consensus       363 eeaEee~kea~e~~~~areead~aq~E~~elQr~~~qrlaeIerl~~qIE~lEre~e~Le~E~~~l~~sEl~al~k-v~~  441 (640)
                      ...++++.-.......++.+++.++.+..-+-....+.....+.+...++.....+       .... .++..+.. +..
T Consensus       482 ~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~-------~e~~-~~l~~~k~~l~~  553 (1293)
T KOG0996|consen  482 EKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESL-------KEKK-TELDDLKEELPS  553 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH-HHHHHHHHhhhh
Confidence            66777777777777777777777777777666655555555555544444443333       2233 33333333 444


Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 006565          442 LEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKL  503 (640)
Q Consensus       442 lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~l~e~nrrleal~~e~~~lqs~i  503 (640)
                      +...+.+...++..+        ..+..++...+...|+.+.++..-+..-+..-++|++.+
T Consensus       554 ~k~e~~~~~k~l~~~--------~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~~kVl~al~  607 (1293)
T KOG0996|consen  554 LKQELKEKEKELPKL--------RKEERNLKSQLNKLRQRVEEAKSSLSSSRSRNKVLDALM  607 (1293)
T ss_pred             HHHHHHHHHHhHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence            444444444455544        555555666666666666666666666666666777766

>KOG2037 consensus Guanylate-binding protein [General function prediction only]

Probab=98.78  E-value=1e-06  Score=99.64  Aligned_cols=270  Identities=20%  Similarity=0.138  Sum_probs=204.6

Q ss_pred             CchhhhhhHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHhhhhcccCCchHHHHHHHHHHhhhchHHHHHHHHHhHHH
Q 006565            1 MEADIRCSSAIQSMERKLRAACHSSDASIDNVVKVLDGLISEYETSCHGPGKWQKLATFLQQSSEGPILDLVKRLIDQIG   80 (640)
Q Consensus         1 ~ea~~~c~~~~~~me~~l~~ac~~~~a~~~~~~~~l~~~l~~y~~s~~G~g~~~k~~~~L~~~l~~~~~d~~~~~~~~i~   80 (640)
                      ++++..|++.+.          |+.+++|+++++|.+.-+.+|..              ++.+...+|.|..-+++...+
T Consensus       222 ~~s~~~c~~~~~----------~~~~~~l~~~l~v~~~~~~el~~--------------~r~~~~~~~~d~~c~~~~~~~  277 (552)
T KOG2037|consen  222 DQSFPFCSYIGE----------HGGTKNLDNRLKVNGPQLEELVQ--------------LRVHARSCFEDLPCFLNPHPG  277 (552)
T ss_pred             HhhhhhhHHHHH----------hccccccccceeecccchHHHHH--------------HHHHHHhhccCcchhhcCchh
Confidence            467889999998          99999999999999999999998              899999999999999999999


Q ss_pred             hHHHHHHhhhcCchhHHHHHHHHHHhhHHhHHHHHHHhhHHhHHHHHhhHHHHHHHHhHHhhhcchHHhHHhhHHhHHhh
Q 006565           81 SERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSL  160 (640)
Q Consensus        81 ~~~~~l~~~c~s~~~k~~~~~k~le~~~k~~~~~~k~~e~~i~d~kk~~~~~~~~~~~l~~k~~s~ee~~~~l~k~le~~  160 (640)
                      ..-...-++-.+-.|=++.+.+||+ .+.....|+++|...+.+-+                               ++.
T Consensus       278 l~~~~n~~~~~~~~~~~~~~~~ql~-~~~p~~~~q~~l~~~~~~~~-------------------------------~~t  325 (552)
T KOG2037|consen  278 LAVAENPAFDGKLEDHYNQFMGQLK-VELPNLLLQELLDEKEISGR-------------------------------EVT  325 (552)
T ss_pred             hhcccCchhhhhHHHHHHHHHHHHh-hhhhHHhhhhhccccccCcc-------------------------------chh
Confidence            9999999999999999999999999 99999999999998887766                               888


Q ss_pred             hhhhHHHHHHHHHHHhHhhHhhHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          161 KNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAI  240 (640)
Q Consensus       161 ~~e~~ew~~kYe~~~~~~k~~~~~~AAGIsklK~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAeek~a~  240 (640)
                      ..+..+|.+.|+++...+....      +-..   ++ -..+...+  +..+.                 ...|.+-+..
T Consensus       326 ~~~~~e~fk~y~~i~q~~~g~~------lp~p---ks-~l~~~aea--~~l~~-----------------va~ak~~~~~  376 (552)
T KOG2037|consen  326 CREMKEYFKAYDKIFQKKLGET------LPGP---KS-MLKANAEA--SSLAA-----------------VAAAKDIYGP  376 (552)
T ss_pred             HHHHHHHHHHHHHHhhHhhhhh------CcCc---cc-HHHHHHHH--hhHHH-----------------HHHHHHHHhh
Confidence            8999999999999998665322      2211   11 11111100  00000                 1122222222


Q ss_pred             HHHhhhHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHH
Q 006565          241 VQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKL  320 (640)
Q Consensus       241 L~er~~~~~q~r~~a~ree~~s~le~kE~kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekl  320 (640)
                      +-+++. .-.                                                          .-.....|+.++
T Consensus       377 ~~Eev~-~G~----------------------------------------------------------~~~~~s~L~~~~  397 (552)
T KOG2037|consen  377 LMEEVK-GGD----------------------------------------------------------IYLSPSGLNLKH  397 (552)
T ss_pred             hhhhhh-cCc----------------------------------------------------------eeecccHHHHHH
Confidence            222221 000                                                          223334455555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 006565          321 EAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMER  400 (640)
Q Consensus       321 e~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~kea~e~~~~areead~aq~E~~elQr~~~qr  400 (640)
                      ...+.....+..+....    ....+.+....+.++++..++-..........+.+..++..+..++.....++....+.
T Consensus       398 d~~k~~a~~~~~e~rK~----ig~~e~~~~~lq~LE~v~~~l~~~~~~~~~s~~~~~~~r~~A~a~~~~~~~~~~~~~~~  473 (552)
T KOG2037|consen  398 DKVKELALKYFTEPRKG----IGAEEVCQRYLQSLESVEEELLQTDQALTESKKLFLAARTPAEAAAKEAILLILSGLEG  473 (552)
T ss_pred             HHHHHHHHHHHhhhhhh----hcHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555443    45566677777888899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 006565          401 MAVIERVQRQIESLERQK  418 (640)
Q Consensus       401 laeIerl~~qIE~lEre~  418 (640)
                      ...|++....++....++
T Consensus       474 ~~~me~~a~~~~~~~~q~  491 (552)
T KOG2037|consen  474 FIGMEIAARLIEETMKQL  491 (552)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999988888887775

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=98.74  E-value=0.0026  Score=79.08  Aligned_cols=42  Identities=14%  Similarity=0.257  Sum_probs=20.9

Q ss_pred             HhHHhhhhhhHHHHHHHHHHHhHhhHhhHHHhhhHHHHhhhh
Q 006565          155 KTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRS  196 (640)
Q Consensus       155 k~le~~~~e~~ew~~kYe~~~~~~k~~~~~~AAGIsklK~Rk  196 (640)
                      .++...+.+...+...|.........++..|...+.+++...
T Consensus       352 ~~l~~~~~~~~~l~~~~~~Lt~~~~di~~ky~~~~~~l~~~~  393 (1201)
T PF12128_consen  352 DQLPEWRNELENLQEQLDLLTSKHQDIESKYNKLKQKLEEAF  393 (1201)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444445555555555555555555555555555444444

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=98.73  E-value=5.3e-05  Score=90.21  Aligned_cols=249  Identities=19%  Similarity=0.249  Sum_probs=166.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 006565          201 ARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEH  280 (640)
Q Consensus       201 ~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAeek~a~L~er~~~~~q~r~~a~ree~~s~le~kE~kie~~k~ei~~  280 (640)
                      .-|....+.+++++.++......+..+..+-+.+++++..++...  ....+    ..++...+.|.-            
T Consensus       214 ~~~~~~~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~~~e--~~~~~----l~~Lk~k~~W~~------------  275 (1074)
T KOG0250|consen  214 ESYSEIMESLDHAKELIDLKEEEIKNLKKKIKEEEEKLDNLEQLE--DLKEN----LEQLKAKMAWAW------------  275 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH--HHHHH----HHHHHHHHHHHH------------
Confidence            345555666777777888888888888888888888887776654  46666    777888888877            


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          281 AEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQE  360 (640)
Q Consensus       281 aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~  360 (640)
                                 +.+.+..+..++..|...++.+..+.++.+....++..+...                     +-+.+.
T Consensus       276 -----------V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k---------------------~teiea  323 (1074)
T KOG0250|consen  276 -----------VNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQK---------------------LTEIEA  323 (1074)
T ss_pred             -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------------------hhHHHH
Confidence                       344444444444555555555555555444444444333333                     233333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-hhhcHHHHHHHHH-
Q 006565          361 RCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEV-NRIRESELEALSK-  438 (640)
Q Consensus       361 rleeaEee~kea~e~~~~areead~aq~E~~elQr~~~qrlaeIerl~~qIE~lEre~e~Le~E~-~~l~~sEl~al~k-  438 (640)
                      .+..+-.+.....++++.++..++.++.++.+++-++-..++.|..+...++.+++++.++..+. ..+. .++..... 
T Consensus       324 ~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~-~~~~e~e~k  402 (1074)
T KOG0250|consen  324 KIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELG-SELEERENK  402 (1074)
T ss_pred             HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhHHHHHHH
Confidence            34444455555666666677777777777777777777777777777777777777777777777 4555 67777777 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 006565          439 VALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQA  501 (640)
Q Consensus       439 v~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~l~e~nrrleal~~e~~~lqs  501 (640)
                      +..|...|+..+..+..| ..+.+.+.+.+..-+.++..+...+....+.++..+-+++.++.
T Consensus       403 ~~~L~~evek~e~~~~~L-~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~  464 (1074)
T KOG0250|consen  403 LEQLKKEVEKLEEQINSL-REELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKK  464 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            777777777777777777 77777777777777777777777777777777777766666654

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=98.72  E-value=8.1e-05  Score=84.13  Aligned_cols=306  Identities=16%  Similarity=0.198  Sum_probs=213.1

Q ss_pred             HHhhHHHHHHHHhHHhhhcchHHhHHhhHHhHHhhh----hhhHHHHHHHHHHHhHhhHhhHHHhhhHHHHhhhhHHHHH
Q 006565          126 KKLADDYTSRINNLQGENISLREKSSSLSKTVDSLK----NEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEA  201 (640)
Q Consensus       126 kk~~~~~~~~~~~l~~k~~s~ee~~~~l~k~le~~~----~e~~ew~~kYe~~~~~~k~~~~~~AAGIsklK~Rkkeae~  201 (640)
                      |+-+-+.-.|.++-.-|.+.||....-|.-.++-.+    ++.+.-+-.|+.-|..-+.+-++.+++.++          
T Consensus        41 K~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~----------  110 (546)
T KOG0977|consen   41 KKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAK----------  110 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHH----------
Confidence            444445556777777888888888888888887654    567778888888888777777777766664          


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 006565          202 RLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHA  281 (640)
Q Consensus       202 RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAeek~a~L~er~~~~~q~r~~a~ree~~s~le~kE~kie~~k~ei~~a  281 (640)
                          +..++.++++++.+.+++|.....-+..+++++......++ .++..    ...+.+-+.-++.+...++.+....
T Consensus       111 ----~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~-~leAe----~~~~krr~~~le~e~~~Lk~en~rl  181 (546)
T KOG0977|consen  111 ----LEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLS-ELEAE----INTLKRRIKALEDELKRLKAENSRL  181 (546)
T ss_pred             ----HHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhh-hhhhH----HHHHHHHHHHHHHHHHHHHHHhhhh
Confidence                45677788899999999999999999999999999999996 88888    8888899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHH-HHHHHHHHHHHH---------HHHHHHHHHHHHHHHHH
Q 006565          282 EQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEA-VNAKAQSFEREA---------RIMEQDKVYLEQKYKSE  351 (640)
Q Consensus       282 Eq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~-~~~eies~e~el---------~~L~~ei~~L~ekl~se  351 (640)
                      ...|..++..+..-..--..+++.+..|.++|.++..-++. +.....-...+.         +.|...|.++..+|+..
T Consensus       182 ~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~  261 (546)
T KOG0977|consen  182 REELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKNELALAIREIRAQYEAI  261 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999988766666677788888888888888753332 222222222222         45666677777776666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcHH
Q 006565          352 FERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRES  431 (640)
Q Consensus       352 ~er~ee~~~rleeaEee~kea~e~~~~areead~aq~E~~elQr~~~qrlaeIerl~~qIE~lEre~e~Le~E~~~l~~s  431 (640)
                      -....+.-+.|  .+..+.++......+......++.|+..+...+..+.+++..++..-..|++++++|..+..    .
T Consensus       262 ~~~nR~diE~~--Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~----e  335 (546)
T KOG0977|consen  262 SRQNRKDIESW--YKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLD----E  335 (546)
T ss_pred             HHHhHHHHHHH--HHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhh----h
Confidence            54433322222  23355556655556666666666666666666666666666666666666666666644332    2


Q ss_pred             HHHHHHH-HHHHHHHHHHHHHHHHHH
Q 006565          432 ELEALSK-VALLEARVEEREKEIESL  456 (640)
Q Consensus       432 El~al~k-v~~lE~~vee~e~eiE~L  456 (640)
                      +...+.. +...++.+...+.++..|
T Consensus       336 ~~r~~e~~L~~kd~~i~~mReec~~l  361 (546)
T KOG0977|consen  336 DQRSFEQALNDKDAEIAKMREECQQL  361 (546)
T ss_pred             hhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence            3344444 555555555555555555

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=98.71  E-value=0.00039  Score=73.34  Aligned_cols=287  Identities=14%  Similarity=0.216  Sum_probs=140.5

Q ss_pred             HHHHhHHhhhcchHHhHHhhHHhHHhhhhh----hHHHHHHHHHHHhHhhHhhHHHhhhHHHHhhhhHHHHHHHHHHHHH
Q 006565          134 SRINNLQGENISLREKSSSLSKTVDSLKNE----ISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQ  209 (640)
Q Consensus       134 ~~~~~l~~k~~s~ee~~~~l~k~le~~~~e----~~ew~~kYe~~~~~~k~~~~~~AAGIsklK~Rkkeae~RL~at~en  209 (640)
                      .+.++..-+.+.||....-|..++...+.-    .+.+...|+.-|.+-+..=+..+...+.+......+..-+..++..
T Consensus        11 dRla~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k   90 (312)
T PF00038_consen   11 DRLASYIEKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRK   90 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHH
Confidence            455566677777888777777777766554    6678999999999888887777777766665555555555544444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 006565          210 ALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMK-EKATKIEHAEQCLTTL  288 (640)
Q Consensus       210 L~RVkDel~Ewkrky~~L~~QAKkAeek~a~L~er~~~~~q~r~~a~ree~~s~le~kE~kie-~~k~ei~~aEq~la~~  288 (640)
                      ++........++..+..+......+.-....++.++. .++..++.++.....++..+...+. ....++..      ..
T Consensus        91 ~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~-~L~eEl~fl~~~heeEi~~L~~~~~~~~~~e~~~------~~  163 (312)
T PF00038_consen   91 YEEELAERKDLEEELESLRKDLDEETLARVDLENQIQ-SLKEELEFLKQNHEEEIEELREQIQSSVTVEVDQ------FR  163 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTTSTT-------------------
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHH-HHHHHHHHHHhhhhhhhhhhhhccccccceeecc------cc
Confidence            4444444444444444444444433333333444543 4444444444444444444443332 00000000      00


Q ss_pred             HHHHHHHHHHHh-hHHHHHhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          289 RLELKAAESKMR-SYEVEISSQKLETK-ELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAE  366 (640)
Q Consensus       289 q~eL~e~e~kIk-~~e~ei~~le~el~-~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaE  366 (640)
                      ..+|..+-..|+ .|+.........+. ....++..+..........+..+..++..+...+.+....+..+......++
T Consensus       164 ~~dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le  243 (312)
T PF00038_consen  164 SSDLSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLE  243 (312)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccchhhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhh
Confidence            111222222222 12222222222111 1122333333333333333444444444444444433444444444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHH
Q 006565          367 KEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSK  438 (640)
Q Consensus       367 ee~kea~e~~~~areead~aq~E~~elQr~~~qrlaeIerl~~qIE~lEre~e~Le~E~~~l~~sEl~al~k  438 (640)
                      ..+.........          +....+..+..+..+|..++..+....+++..|.+-+..|. .|+.+..+
T Consensus       244 ~~l~~le~~~~~----------~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld-~EIatYR~  304 (312)
T PF00038_consen  244 RQLRELEQRLDE----------EREEYQAEIAELEEELAELREEMARQLREYQELLDVKLALD-AEIATYRK  304 (312)
T ss_dssp             HHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred             hhHHHHHHHHHH----------HHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHH
Confidence            443333333322          23333555667777777777777777777777777777777 77776665

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=98.71  E-value=0.0016  Score=74.98  Aligned_cols=159  Identities=15%  Similarity=0.208  Sum_probs=84.4

Q ss_pred             hHHHHHHHhhHHhHHHHHhhHHHHHHHHhHHhhhcchHHhHHhhH--HhHHhhhhhhHHHHHHHHHHHhHhhHhhHHHhh
Q 006565          110 YKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLS--KTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCS  187 (640)
Q Consensus       110 ~~~~~~k~~e~~i~d~kk~~~~~~~~~~~l~~k~~s~ee~~~~l~--k~le~~~~e~~ew~~kYe~~~~~~k~~~~~~AA  187 (640)
                      ..-+|++++-.-|+++       ..++.+|.  -..+.+.+.-+.  ..-..++..-..|++.|++.++..=..=+....
T Consensus        19 ~~~~~rr~~~~~i~~L-------e~~k~~l~--~~pv~~el~kvk~l~l~Ges~~~f~~w~~~~~~i~~~~~~~ie~~l~   89 (569)
T PRK04778         19 AGLILRKRNYKRIDEL-------EERKQELE--NLPVNDELEKVKKLNLTGQSEEKFEEWRQKWDEIVTNSLPDIEEQLF   89 (569)
T ss_pred             HHHHHHHHHHHHHHHH-------HHHHHHHh--cCCHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence            3467777777666665       33333332  234455444432  345677788889999999966644332222222


Q ss_pred             hHH--HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhHHHH
Q 006565          188 EIE--VLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLA  265 (640)
Q Consensus       188 GIs--klK~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAeek~a~L~er~~~~~q~r~~a~ree~~s~le  265 (640)
                      .+-  .-+-|-..|-.-+..+.+.++.++..+..+..-++.|..+-++-......+..+.. .+.-.+.|-+-.|-.++.
T Consensus        90 ~ae~~~~~~~f~~a~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~-~~rk~ll~~~~~~G~a~~  168 (569)
T PRK04778         90 EAEELNDKFRFRKAKHEINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYR-ELRKSLLANRFSFGPALD  168 (569)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCccccchHH
Confidence            211  11223334445566666666666666666666666666655555555555555543 444444444444444444


Q ss_pred             HHHHHHHHHHHHH
Q 006565          266 EKEEEMKEKATKI  278 (640)
Q Consensus       266 ~kE~kie~~k~ei  278 (640)
                      .++..+..+...|
T Consensus       169 ~le~~l~~~e~~f  181 (569)
T PRK04778        169 ELEKQLENLEEEF  181 (569)
T ss_pred             HHHHHHHHHHHHH
Confidence            4444444444443

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=98.69  E-value=0.00065  Score=81.48  Aligned_cols=311  Identities=18%  Similarity=0.232  Sum_probs=157.2

Q ss_pred             HHhhHHhHHH-HH---hhHHHHHHHHhHHhh---hc----chHHhHHhhHHhHHhhhhhhHHHHHHHHHHHhHhhHhhHH
Q 006565          116 KRYDDAINDK-KK---LADDYTSRINNLQGE---NI----SLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQ  184 (640)
Q Consensus       116 k~~e~~i~d~-kk---~~~~~~~~~~~l~~k---~~----s~ee~~~~l~k~le~~~~e~~ew~~kYe~~~~~~k~~~~~  184 (640)
                      .+|..||..+ ++   |.++++.-.+.+..=   -.    ..++-+..|.+..+..     -|+.+--+.+-..      
T Consensus       263 ~ry~~~I~~~~~rv~~L~e~~sek~~~~k~~e~ek~~lE~~k~~al~fL~kenel~-----~~~~~~~q~~~~~------  331 (1293)
T KOG0996|consen  263 NRYKEPIEELMRRVERLNEDRSEKENRVKLVEKEKKALEGPKNEALEFLKKENELF-----RKKNKLCQYILYE------  331 (1293)
T ss_pred             cccchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH------
Confidence            4688898888 33   333333333332221   11    2344556666655544     4554444332211      


Q ss_pred             HhhhHHHHhhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhHH
Q 006565          185 VCSEIEVLKSRSTAAEARLAAAREQAL-SAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSST  263 (640)
Q Consensus       185 ~AAGIsklK~Rkkeae~RL~at~enL~-RVkDel~Ewkrky~~L~~QAKkAeek~a~L~er~~~~~q~r~~a~ree~~s~  263 (640)
                      +-+.|+.+.......+.-|.+-.+..+ -..+.....+..       -+..+++.+.+.+... ....+    +.++..+
T Consensus       332 ~~~ki~~~~~~~~~~~e~lk~~~ek~~~e~~~~~~k~e~~-------~~~~~e~~~~~kn~~~-~~k~~----~~~~e~~  399 (1293)
T KOG0996|consen  332 SRAKIAEMQEELEKIEEGLKDENEKFDIESNEEVEKNEAV-------KKEIKERAKELKNKFE-SLKKK----FQDLERE  399 (1293)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHH-------HHHHHHHHHHHHHHHH-HHHHH----HHHHHHH
Confidence            244555555555555555554444444 333333333333       3333444444443332 33333    3344444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          264 LAEKEEEMKEKATKIEHAEQC-------LTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARI  336 (640)
Q Consensus       264 le~kE~kie~~k~ei~~aEq~-------la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~  336 (640)
                      -...+..++...+.++.++..       ...+......+...|..+..++..+...+..++..++   ....++..+...
T Consensus       400 ~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~---e~~~~l~~~t~~  476 (1293)
T KOG0996|consen  400 DVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELD---EILDSLKQETEG  476 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhhhhh
Confidence            333333444444444444444       4444444455555555566666555555544444333   334556667777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          337 MEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLER  416 (640)
Q Consensus       337 L~~ei~~L~ekl~se~er~ee~~~rleeaEee~kea~e~~~~areead~aq~E~~elQr~~~qrlaeIerl~~qIE~lEr  416 (640)
                      +..++..++..+.-....+.++..+++.++.+.+-.......+...++.++.-...++..+-+..+.+..+...|.++..
T Consensus       477 ~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~  556 (1293)
T KOG0996|consen  477 IREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQ  556 (1293)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence            77777777777776666666666666666666666666666665555555555555555555555555555555555555


Q ss_pred             HHHHhHHHHhhhcHHHHHHHHH-HHHHHHHHHHHHHHH
Q 006565          417 QKTDLTNEVNRIRESELEALSK-VALLEARVEEREKEI  453 (640)
Q Consensus       417 e~e~Le~E~~~l~~sEl~al~k-v~~lE~~vee~e~ei  453 (640)
                      ++.....++..++ .+...+.. +..+-.+|++...-+
T Consensus       557 e~~~~~k~l~~~~-~e~~~~~~~~~~~rqrveE~ks~~  593 (1293)
T KOG0996|consen  557 ELKEKEKELPKLR-KEERNLKSQLNKLRQRVEEAKSSL  593 (1293)
T ss_pred             HHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555555 44444444 444444444444333

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.68  E-value=0.0003  Score=82.83  Aligned_cols=50  Identities=8%  Similarity=0.063  Sum_probs=46.1

Q ss_pred             hhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          186 CSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAAL  235 (640)
Q Consensus       186 AAGIsklK~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAe  235 (640)
                      .||...|..|+.+++.-+..|..--.-+..++..+..++..|+.+-+-+.
T Consensus       162 VaGtrvYeerreeSlkim~ET~qK~ekI~ell~yieerLreLEeEKeeL~  211 (1200)
T KOG0964|consen  162 VAGTRVYEERREESLKIMEETKQKREKINELLKYIEERLRELEEEKEELE  211 (1200)
T ss_pred             hcccchhHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            79999999999999999999999999999999999999999998655544

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=98.63  E-value=6e-09  Score=123.90  Aligned_cols=381  Identities=19%  Similarity=0.268  Sum_probs=0.0

Q ss_pred             hhHHHHHHHHHHhhH----HhHHHHHHHhhHHhHHHHHhhHHHHHHHHhHHhhhcchHHhHHhhHHhHHhhhhhhHHH--
Q 006565           94 EDNMKLLKKQLEDSE----RYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDW--  167 (640)
Q Consensus        94 ~~k~~~~~k~le~~~----k~~~~~~k~~e~~i~d~kk~~~~~~~~~~~l~~k~~s~ee~~~~l~k~le~~~~e~~ew--  167 (640)
                      ++-|..|.+.||..-    .-.+.+++.+.++|.++.-.++....-++.|..--+.|+.....|..+|++..+.+.+-  
T Consensus       101 E~El~~Lrr~LEe~~~~~e~~~~~lrkkh~~~~~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek  180 (859)
T PF01576_consen  101 EAELAKLRRDLEEANLQHEATLAELRKKHQDAVAELNEQLEQLQKQKAKLEKEKSQLEAELDDLQAQLDSLQKAKQEAEK  180 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence            345566777776432    45667788888888888888888888888888888888888888888888776665554  


Q ss_pred             -HHHHHHHHhHhhHhhHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H
Q 006565          168 -KRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKA-------A  239 (640)
Q Consensus       168 -~~kYe~~~~~~k~~~~~~AAGIsklK~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAeek~-------a  239 (640)
                       .+.++.-|++.+.--+..-..++.|...+.-+...++.+..+|+-...-+.-+.+.-.+|..|..-+...+       .
T Consensus       181 ~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~  260 (859)
T PF01576_consen  181 KRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETRAKQ  260 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhh
Confidence             34455555555554555555555554444444444444444444444444444443333333332222111       1


Q ss_pred             HHHHhhhHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHHHHhhHHHHHHHHHH
Q 006565          240 IVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLEL-KAAESKMRSYEVEISSQKLETKELSE  318 (640)
Q Consensus       240 ~L~er~~~~~q~r~~a~ree~~s~le~kE~kie~~k~ei~~aEq~la~~q~eL-~e~e~kIk~~e~ei~~le~el~~L~e  318 (640)
                      .|..... .++...+.+++++....+.+.    .+...+..+...+...+..+ .+....+..++.-.+.+..+|..+..
T Consensus       261 ~L~~~l~-~le~e~~~L~eqleeE~e~k~----~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e  335 (859)
T PF01576_consen  261 ALEKQLR-QLEHELEQLREQLEEEEEAKS----ELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQE  335 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hhHHHHH-HHHHHHHHHHHHHhhhhhhHH----HHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            1333332 444443333333332211111    11222222333333333333 22333344555666677778888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 006565          319 KLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAM  398 (640)
Q Consensus       319 kle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~kea~e~~~~areead~aq~E~~elQr~~~  398 (640)
                      .++.+.....++++....|..++.-+...+.........+.++-..+...+......++....+.+.++.+...++..++
T Consensus       336 ~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~  415 (859)
T PF01576_consen  336 QLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELF  415 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            88888888888888888888888888888888887777777777777778888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcHHHHHH-------HHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 006565          399 ERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEA-------LSK-VALLEARVEEREKEIESLLESNNEQRASTVKK  470 (640)
Q Consensus       399 qrlaeIerl~~qIE~lEre~e~Le~E~~~l~~sEl~a-------l~k-v~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~  470 (640)
                      .+...++.+..+++.++++...|..++..+. +.++.       +.+ ...|+..++++...++++ ...++.....+.-
T Consensus       416 ~Lk~~lee~~e~~e~lere~k~L~~El~dl~-~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~-E~~l~~~E~~~lR  493 (859)
T PF01576_consen  416 KLKNELEELQEQLEELERENKQLQDELEDLT-SQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEA-EDALEAEEQKKLR  493 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHhhccch-hhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence            8888888888888888888888888888876 55444       333 444444555555555555 4444444445555


Q ss_pred             HHHHHHHHHHH
Q 006565          471 LEDLLESERRS  481 (640)
Q Consensus       471 le~~le~~re~  481 (640)
                      ++..|..++..
T Consensus       494 l~~el~~~r~e  504 (859)
T PF01576_consen  494 LQVELQQLRQE  504 (859)
T ss_dssp             -----------
T ss_pred             HHHHHHHHHHH
Confidence            55555544444

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=98.58  E-value=0.0017  Score=68.56  Aligned_cols=272  Identities=16%  Similarity=0.182  Sum_probs=154.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhHHHHHHHH
Q 006565          194 SRSTAAEARLAAAREQALSAQEE----VEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEE  269 (640)
Q Consensus       194 ~Rkkeae~RL~at~enL~RVkDe----l~Ewkrky~~L~~QAKkAeek~a~L~er~~~~~q~r~~a~ree~~s~le~kE~  269 (640)
                      .|...++..-......+.....-    ...+...|..-..++..   .+..+..... .++..    +..+..+++....
T Consensus        18 ekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~---~id~~~~eka-~l~~e----~~~l~~e~~~~r~   89 (312)
T PF00038_consen   18 EKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRR---QIDDLSKEKA-RLELE----IDNLKEELEDLRR   89 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHH---HHHHHHHHHH-HHHHH----HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHH---hhhhHHHHhh-HHhhh----hhhHHHHHHHHHH
Confidence            34444444444444444433333    33344444444443333   3333333332 44555    6667777777778


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHH
Q 006565          270 EMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFE----------REARIMEQ  339 (640)
Q Consensus       270 kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e----------~el~~L~~  339 (640)
                      +|+........++..+..++..+.......-.+++.+..++.+|.++..-++.--..+...-          .....|..
T Consensus        90 k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~~~~~~~e~~~~~~~dL~~  169 (312)
T PF00038_consen   90 KYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQIQSSVTVEVDQFRSSDLSA  169 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT----------------HHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccceeecccccccchh
Confidence            88888888888888888888888888888888888888888888888776654222221111          11122333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          340 DKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKT  419 (640)
Q Consensus       340 ei~~L~ekl~se~er~ee~~~rleeaEee~kea~e~~~~areead~aq~E~~elQr~~~qrlaeIerl~~qIE~lEre~e  419 (640)
                      -+..+...|+..-.++-...+.|  ....+..+..........+..++.|...+...+..+..+|..++.....|+.++.
T Consensus       170 ~L~eiR~~ye~~~~~~~~e~e~~--y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~  247 (312)
T PF00038_consen  170 ALREIRAQYEEIAQKNREELEEW--YQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLR  247 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHhhhhhhhhhh--cccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHH
Confidence            34444444444443333222221  3334566666666677777777777777777777777777777777777777766


Q ss_pred             HhHHHHhhhcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 006565          420 DLTNEVNRIRESELEALSK-VALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERR  480 (640)
Q Consensus       420 ~Le~E~~~l~~sEl~al~k-v~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re  480 (640)
                      .++....    .+...+.. +..++..+.....++... ....+.+-..--.|+.+|..+|.
T Consensus       248 ~le~~~~----~~~~~~~~~i~~le~el~~l~~~~~~~-~~ey~~Ll~~K~~Ld~EIatYR~  304 (312)
T PF00038_consen  248 ELEQRLD----EEREEYQAEIAELEEELAELREEMARQ-LREYQELLDVKLALDAEIATYRK  304 (312)
T ss_dssp             HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH----HHHHHHHHhhhccchhHHHHHHHHHHH-HHHHHHHHHHHHhHHHHHHHHHH
Confidence            6654433    33444555 666666666666666655 44444455554555555555554

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=98.57  E-value=0.0034  Score=71.36  Aligned_cols=47  Identities=21%  Similarity=0.215  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhh
Q 006565          467 TVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQELTKA  513 (640)
Q Consensus       467 ~l~~le~~le~~re~l~e~nrrleal~~e~~~lqs~id~Leg~~~~~  513 (640)
                      +|-....+|.+++..+..+.+.-+.++.+.+.+...|.-|+.-+..+
T Consensus       411 qlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~~  457 (546)
T PF07888_consen  411 QLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDKV  457 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44555566666777777777777777787788888887777666444

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=98.56  E-value=0.0036  Score=71.15  Aligned_cols=76  Identities=13%  Similarity=0.071  Sum_probs=47.0

Q ss_pred             HHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          298 KMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKAT  373 (640)
Q Consensus       298 kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~kea~  373 (640)
                      ....+..+...+..+|+.+.+.+.+...+..-+.+++..+..-.+++-..+....=..+.+..++..+.-.+++..
T Consensus       277 ~~~~~~~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLad~~l~lke~~  352 (546)
T PF07888_consen  277 QAQQLQQENEALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQLADASLELKEGR  352 (546)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence            3345555666667777777777777777777777777766666666666665555445555555555555554444

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=98.56  E-value=0.0046  Score=74.05  Aligned_cols=41  Identities=20%  Similarity=0.271  Sum_probs=27.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          194 SRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAAL  235 (640)
Q Consensus       194 ~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAe  235 (640)
                      .|...+-..|.++..+- ||.+++...+...+.+..+.+.-.
T Consensus      1317 ~r~~~s~~~l~s~~~~s-R~e~l~~k~k~~f~~~~~n~~~L~ 1357 (1758)
T KOG0994|consen 1317 RRVDASSRELASLVDQS-RVEELLVKQKGDFGGLAENSRLLV 1357 (1758)
T ss_pred             Hhhhhhhhcccchhhhh-HHHHHHHHhhhcccccccccHHHH
Confidence            45555555566666666 888888888888777655555443

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=98.52  E-value=1.7e-08  Score=120.11  Aligned_cols=297  Identities=18%  Similarity=0.274  Sum_probs=0.0

Q ss_pred             hhchHHHHHHHHHhHHHhHHHHHHhhhcCchhHHHHHHHHHHhhHHhHHHHHH---HhhHHhHHHHHhhHHHHHHHHhHH
Q 006565           64 SEGPILDLVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLK---RYDDAINDKKKLADDYTSRINNLQ  140 (640)
Q Consensus        64 l~~~~~d~~~~~~~~i~~~~~~l~~~c~s~~~k~~~~~k~le~~~k~~~~~~k---~~e~~i~d~kk~~~~~~~~~~~l~  140 (640)
                      +...|.++..+ ++......+-|.....-....++.|..+|+..+.-..-+.+   .++..+.|+++..++-...+..|.
T Consensus       185 lE~qL~El~~k-lee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~  263 (859)
T PF01576_consen  185 LEAQLNELQAK-LEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETRAKQALE  263 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhH
Confidence            44444444333 35566666677777777788888888888888854444444   789999999888888888999999


Q ss_pred             hhhcchHHhHHhhHHhHHhhh--------------hhhHHHHHHHHHHHhHhhHhhHHHhhhHHHHhhhhHHHHHHHHHH
Q 006565          141 GENISLREKSSSLSKTVDSLK--------------NEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAA  206 (640)
Q Consensus       141 ~k~~s~ee~~~~l~k~le~~~--------------~e~~ew~~kYe~~~~~~k~~~~~~AAGIsklK~Rkkeae~RL~at  206 (640)
                      .+.+.++..+..|..+||.-.              .+..+|++||+.-+          ..++..+..-++.+..+|..+
T Consensus       264 ~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~----------~~~~EelEeaKKkL~~~L~el  333 (859)
T PF01576_consen  264 KQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEA----------EQRTEELEEAKKKLERKLQEL  333 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHh----------hhhHHHHHHHHHHHHHHHHHH
Confidence            999999999998888887543              45556666666543          344556666777788888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          207 REQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLT  286 (640)
Q Consensus       207 ~enL~RVkDel~Ewkrky~~L~~QAKkAeek~a~L~er~~~~~q~r~~a~ree~~s~le~kE~kie~~k~ei~~aEq~la  286 (640)
                      .+.++-+..-+..|++.-.-|..+..-+.-.+........ .+.-+    ...|...++.....+..+......+.....
T Consensus       334 ~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~-~LeKK----qr~fDk~l~e~k~~~~~~~~e~d~~q~e~r  408 (859)
T PF01576_consen  334 QEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAA-ELEKK----QRKFDKQLAEWKAKVEELQAERDAAQREAR  408 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH----HHhHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            8888888888877777776666655555544444444442 44444    555555554444455555555555555555


Q ss_pred             HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          287 TLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAE  366 (640)
Q Consensus       287 ~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaE  366 (640)
                      .+..++..+...+......+..++.+-+.|...+..+.+.+....+.+..|...+..|+.........+++....+...+
T Consensus       409 ~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~E  488 (859)
T PF01576_consen  409 ELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAEDALEAEE  488 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55444433333333333333333333333333333333333333333333333333333333333334444444444444


Q ss_pred             HHHHHHHHHH
Q 006565          367 KEAKKATELA  376 (640)
Q Consensus       367 ee~kea~e~~  376 (640)
                      ..+.++.-.+
T Consensus       489 ~~~lRl~~el  498 (859)
T PF01576_consen  489 QKKLRLQVEL  498 (859)
T ss_dssp             ----------
T ss_pred             HHHHHHHHHH
Confidence            4433333333

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma

Probab=98.48  E-value=4.2e-05  Score=80.84  Aligned_cols=206  Identities=14%  Similarity=0.216  Sum_probs=144.3

Q ss_pred             hhhhhHHHH--------HHHHHHHHhcCCCCcchhhHH----HHHHHHHHhhhhcccCCchHHHHHHHHHHhhhchHHHH
Q 006565            4 DIRCSSAIQ--------SMERKLRAACHSSDASIDNVV----KVLDGLISEYETSCHGPGKWQKLATFLQQSSEGPILDL   71 (640)
Q Consensus         4 ~~~c~~~~~--------~me~~l~~ac~~~~a~~~~~~----~~l~~~l~~y~~s~~G~g~~~k~~~~L~~~l~~~~~d~   71 (640)
                      ...|..|++        .|+..+    .-|-.+++.+.    .....++..|...++|- .-++|..-|...+.+.|.+|
T Consensus        38 e~e~~~A~~~A~~~Y~~~m~~~~----~~P~~~~~eL~~~H~~~~~~A~~~F~~~s~~d-~~~~~~~~L~~~i~~~~~~~  112 (297)
T PF02841_consen   38 EAENRAAVEKAVEHYEEQMEQRV----KLPTETLEELLELHEQCEKEALEVFMKRSFGD-EDQKYQKKLMEQIEKKFEEF  112 (297)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH------SS-SSHHHHHHHHHHHHHHHHHHHHHH-----GGGHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh----CCCccCHHHHHHHHHHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHH
Confidence            455766664        466665    45555455544    45778999999988886 55699999999999999998


Q ss_pred             HHHHH--------hHHHh----HHHHHHhhhcCchhHHHHHHHHHHhhHHhHHHHHHH-hhHHhHHHHHhhHHHHHHHHh
Q 006565           72 VKRLI--------DQIGS----ERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKR-YDDAINDKKKLADDYTSRINN  138 (640)
Q Consensus        72 ~~~~~--------~~i~~----~~~~l~~~c~s~~~k~~~~~k~le~~~k~~~~~~k~-~e~~i~d~kk~~~~~~~~~~~  138 (640)
                      +++-.        +-|+.    ++.++...|.+++..+..+.+.++....   .|.+. --||..+-  +...|      
T Consensus       113 ~~~N~~~s~~~C~~~l~~l~~~le~~l~~~~~~~~gg~~~~~~~~~~~~~---~Y~~~p~Kg~ka~e--vL~~f------  181 (297)
T PF02841_consen  113 CKQNEEASEKKCQALLQELFQPLEEKLKQGCYSKPGGYQLFLKELDELEK---EYEQEPGKGVKAEE--VLQEF------  181 (297)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSSTTHHHHHHHHHHHHHH---HHHHSS---TTHHH--HHHHH------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH---HHhhcCCCCccHHH--HHHHH------
Confidence            87655        33444    9999999999999999998888877662   33333 11111110  11111      


Q ss_pred             HHhhhcchHHhHHhhHHhHHhhhhhhHHHHHHHHHHHhHhhHhhHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 006565          139 LQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVE  218 (640)
Q Consensus       139 l~~k~~s~ee~~~~l~k~le~~~~e~~ew~~kYe~~~~~~k~~~~~~AAGIsklK~Rkkeae~RL~at~enL~RVkDel~  218 (640)
                      |. .+.++++.+....+.|...+++...|+.+++.+-.+.+...+........+..+....+..+....+.+...+.   
T Consensus       182 l~-~~~~~~~~ilq~d~~L~~~ek~~~~~~~k~e~~e~e~~~l~e~~~~~~~~le~~~~~~ee~~~~L~ekme~e~~---  257 (297)
T PF02841_consen  182 LQ-SKESMENSILQADQQLTEKEKEIEEEQAKAEAAEKEKEKLEEKQKEQEQMLEQQERSYEEHIKQLKEKMEEERE---  257 (297)
T ss_dssp             HH-HCHHHHHHHHHH-TTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred             HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence            01 05678888899999999999999999999999999999999999999999999999999998888877666555   


Q ss_pred             HHHHHHHHHHH
Q 006565          219 EWKRKYGVAVR  229 (640)
Q Consensus       219 Ewkrky~~L~~  229 (640)
                      .|...++.+..
T Consensus       258 ~~~~e~e~~l~  268 (297)
T PF02841_consen  258 QLLQEQERLLE  268 (297)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            55555555444

GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=98.43  E-value=0.0081  Score=69.13  Aligned_cols=162  Identities=20%  Similarity=0.304  Sum_probs=96.4

Q ss_pred             HhHHHHHHHhhHHhHHHHHhhHHHHHHHHhHHhhhcchHHhHHhhHH--hHHhhhhhhHHHHHHHHHHHhHh-hHhhHHH
Q 006565          109 RYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSK--TVDSLKNEISDWKRKYDQVLTKQ-KAMEDQV  185 (640)
Q Consensus       109 k~~~~~~k~~e~~i~d~kk~~~~~~~~~~~l~~k~~s~ee~~~~l~k--~le~~~~e~~ew~~kYe~~~~~~-k~~~~~~  185 (640)
                      -..-+|+++|---|+++       ..++..|  .-..+.+++..+.+  .-..++.--..|+.+|++.++.+ ..+++.+
T Consensus        14 ~~~~~~rk~~~k~i~~L-------e~~k~~l--~~~pv~~el~kvk~l~l~Gqt~~~fe~w~~~w~~i~~~~~~~ie~~L   84 (560)
T PF06160_consen   14 IIGYIYRKRYYKEIDEL-------EERKNEL--MNLPVADELSKVKKLNLTGQTEEKFEEWRQKWDEIVTKQLPEIEEQL   84 (560)
T ss_pred             HHHHHHHHHHHHHHHHH-------HHHHHHH--HcCCHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            33446777776666655       3344432  33466666655543  44667777889999999999553 3333332


Q ss_pred             -hhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhHHH
Q 006565          186 -CSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTL  264 (640)
Q Consensus       186 -AAGIsklK~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAeek~a~L~er~~~~~q~r~~a~ree~~s~l  264 (640)
                       -|.=...+-|-..|-..+..+.+.|+.+.+.+..+..-++.|...-.+-......+.++.. .+.-.+.+-+-.+-.++
T Consensus        85 ~~ae~~~~~~rf~ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~-~lrk~ll~~~~~~G~a~  163 (560)
T PF06160_consen   85 FEAEEYADKYRFKKAKQAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYR-ELRKELLAHSFSYGPAI  163 (560)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhchhH
Confidence             1111223334455666677777777777777777777777777766666666666666664 55555555555555555


Q ss_pred             HHHHHHHHHHHHHHHH
Q 006565          265 AEKEEEMKEKATKIEH  280 (640)
Q Consensus       265 e~kE~kie~~k~ei~~  280 (640)
                      ..++..+..+...|..
T Consensus       164 ~~Le~~L~~ie~~F~~  179 (560)
T PF06160_consen  164 EELEKQLENIEEEFSE  179 (560)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            5555555555554443

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=98.42  E-value=0.0038  Score=74.75  Aligned_cols=298  Identities=16%  Similarity=0.171  Sum_probs=147.5

Q ss_pred             HhHHHHHHHhhHHhHHH---HHhhHHHHHHHHhHHhhhcchHHhHHhhHHhHHhhhhhhHHHHHHHHHHHhHhhHhhHHH
Q 006565          109 RYKSEYLKRYDDAINDK---KKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQV  185 (640)
Q Consensus       109 k~~~~~~k~~e~~i~d~---kk~~~~~~~~~~~l~~k~~s~ee~~~~l~k~le~~~~e~~ew~~kYe~~~~~~k~~~~~~  185 (640)
                      ..+......+.+.....   .+..-++..+-+.-+.+-.-..++-.-...|++++-++.-.-..---..+++..+.-+.+
T Consensus      1415 ~~A~~~~~~l~~~~ae~eq~~~~v~ea~~~aseA~~~Aq~~~~~a~as~~q~~~s~~el~~Li~~v~~Flt~~~adp~si 1494 (1758)
T KOG0994|consen 1415 LMAGDADTQLRSKLAEAEQTLSMVREAKLSASEAQQSAQRALEQANASRSQMEESNRELRNLIQQVRDFLTQPDADPDSI 1494 (1758)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Confidence            44444444444443333   222233333333344444445555556666666666666655555555555554443322


Q ss_pred             ---------------hhhHHHHhhhhHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          186 ---------------CSEIEVLKSRSTAAEARL-------AAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQE  243 (640)
Q Consensus       186 ---------------AAGIsklK~Rkkeae~RL-------~at~enL~RVkDel~Ewkrky~~L~~QAKkAeek~a~L~e  243 (640)
                                     ...|..+-....+..++|       ..|..|+.||           ..|...|++|...+..++.
T Consensus      1495 ~~vA~~vL~l~lp~tpeqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra-----------~~L~s~A~~a~~~A~~v~~ 1563 (1758)
T KOG0994|consen 1495 EEVAEEVLALELPLTPEQIQQLTGEIQERVASLPNVDAILSRTKGDIARA-----------ENLQSEAERARSRAEDVKG 1563 (1758)
T ss_pred             HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHH-----------HHHHHHHHHHHhHHHHHHH
Confidence                           122333333333333333       3333333333           2344556666666666665


Q ss_pred             hhhHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHH
Q 006565          244 RTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAV  323 (640)
Q Consensus       244 r~~~~~q~r~~a~ree~~s~le~kE~kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~  323 (640)
                      ..+ .+.+-    .++...+.-.-+.-|+.+...+..+.+-+...+.+...+|.........+..+...+..|..+.-..
T Consensus      1564 ~ae-~V~ea----L~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qn 1638 (1758)
T KOG0994|consen 1564 QAE-DVVEA----LEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQN 1638 (1758)
T ss_pred             HHH-HHHHH----HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            554 44444    3333344344444566666666666666666666666666555555555555555555555554444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 006565          324 NAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAV  403 (640)
Q Consensus       324 ~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~kea~e~~~~areead~aq~E~~elQr~~~qrlae  403 (640)
                      ...+...++.+-.++.+-...       ++.++.+...++-+..-...--+....++..++..+.+...+--..+..+..
T Consensus      1639 s~~A~~a~~~a~sa~~~A~~a-------~q~~~~lq~~~~~~~~l~~~r~~g~~~ar~rAe~L~~eA~~Ll~~a~~kl~~ 1711 (1758)
T KOG0994|consen 1639 SAEAKQAEKTAGSAKEQALSA-------EQGLEILQKYYELVDRLLEKRMEGSQAARERAEQLRTEAEKLLGQANEKLDR 1711 (1758)
T ss_pred             cHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444443       3333333333333333333333444445555555555555555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHhhhc
Q 006565          404 IERVQRQIESLERQKTDLTNEVNRIR  429 (640)
Q Consensus       404 Ierl~~qIE~lEre~e~Le~E~~~l~  429 (640)
                      |..|+...++.++.+++...++..|+
T Consensus      1712 l~dLe~~y~~~~~~L~~~~aeL~~Le 1737 (1758)
T KOG0994|consen 1712 LKDLELEYLRNEQALEDKAAELAGLE 1737 (1758)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHhhhHH
Confidence            55555555666666666655555555

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=98.35  E-value=0.011  Score=70.39  Aligned_cols=247  Identities=17%  Similarity=0.206  Sum_probs=116.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHhhhHHHhhhHHHHHHHHhHHHHHHH
Q 006565          199 AEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALE----------KAAIVQERTSKEMQQREDVLREEFSSTLAEKE  268 (640)
Q Consensus       199 ae~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAee----------k~a~L~er~~~~~q~r~~a~ree~~s~le~kE  268 (640)
                      .+..|.++...+.-++.++..+++++..+++++.+-.+          +++-++.+.+...-       -.+..++....
T Consensus       675 ~l~~l~~~~~~~~~~q~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e~-------~~~~~~~~~~~  747 (1174)
T KOG0933|consen  675 QLQKLKQAQKELRAIQKELEALERELKSLEAQSQKFRDLKQQLELKLHELALLEKRLEQNEF-------HKLLDDLKELL  747 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChH-------hhHHHHHHHHH
Confidence            45677888888999999999999999999988776552          12222222220111       11222233333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          269 EEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKY  348 (640)
Q Consensus       269 ~kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl  348 (640)
                      ..+++..++|.+....+-.........+..++.+.+..   +.+++.|+..++.+..+++....+...-.++...|.-..
T Consensus       748 e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~r---e~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~  824 (1174)
T KOG0933|consen  748 EEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANR---ERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEH  824 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhh---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444444444332221   223333333444444444333333333333333333333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhh
Q 006565          349 KSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRI  428 (640)
Q Consensus       349 ~se~er~ee~~~rleeaEee~kea~e~~~~areead~aq~E~~elQr~~~qrlaeIerl~~qIE~lEre~e~Le~E~~~l  428 (640)
                      +...+........|...+..+.....+...+...++.+..+...+|..+...-+.+-....+|..+-...+.+..++...
T Consensus       825 e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~  904 (1174)
T KOG0933|consen  825 EELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDG  904 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcc
Confidence            33333334444444444444444444444444444444444444444444444444444444444444444444444444


Q ss_pred             cHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 006565          429 RESELEALSK-VALLEARVEEREKEIESL  456 (640)
Q Consensus       429 ~~sEl~al~k-v~~lE~~vee~e~eiE~L  456 (640)
                      . .+...+.. +..++..-..-..+++.|
T Consensus       905 ~-l~~kkle~e~~~~~~e~~~~~k~v~~l  932 (1174)
T KOG0933|consen  905 E-LERKKLEHEVTKLESEKANARKEVEKL  932 (1174)
T ss_pred             c-chHHHHHhHHHHhhhhHHHHHHHHHHH
Confidence            4 44444444 444444444444444444

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=98.32  E-value=0.019  Score=68.48  Aligned_cols=35  Identities=23%  Similarity=0.440  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHhhh
Q 006565           10 AIQSMERKLRAACHSSDASIDNVVKVLDGLISEYE   44 (640)
Q Consensus        10 ~~~~me~~l~~ac~~~~a~~~~~~~~l~~~l~~y~   44 (640)
                      -|.++|+++...|.+-|+.+.-.++.|+..++.-.
T Consensus       273 ei~~le~~ikei~~~rd~em~~~~~~L~~~~~~~~  307 (1174)
T KOG0933|consen  273 EIESLEKEIKEIEQQRDAEMGGEVKALEDKLDSLQ  307 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHH
Confidence            47778888888888888888877777777666543

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=98.30  E-value=0.011  Score=67.44  Aligned_cols=296  Identities=17%  Similarity=0.189  Sum_probs=149.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HhhhHHHhhhHHHHHHHHhHHHHH
Q 006565          209 QALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQ----------------------ERTSKEMQQREDVLREEFSSTLAE  266 (640)
Q Consensus       209 nL~RVkDel~Ewkrky~~L~~QAKkAeek~a~L~----------------------er~~~~~q~r~~a~ree~~s~le~  266 (640)
                      .|.-..|-++-.--+...|+.|-.+-..++..+.                      .-+. .+...    +..+...+..
T Consensus        43 El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~-e~~~~----ra~~e~ei~k  117 (546)
T KOG0977|consen   43 ELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLD-ETARE----RAKLEIEITK  117 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHH-HHHHH----HHHHHHHHHH
Confidence            4444555555566666667776666663333322                      2221 22223    5555555666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          267 KEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQ  346 (640)
Q Consensus       267 kE~kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~e  346 (640)
                      +..++++++..+..+++.....+..+......+..+++++..+.-.++.+.+.+..+..+...+..++..+...++-=.-
T Consensus       118 l~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etl  197 (546)
T KOG0977|consen  118 LREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETL  197 (546)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            66666666666666666666666666666666666666666666666666666666666655555555544432221111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-----HHHHhhHHHHHHH-HHHHHHHHHHHHHHH--------
Q 006565          347 KYKSEFERFEEVQERCKVAEKEA-KKATELADRERAEA-----AAARKGKSEFENL-AMERMAVIERVQRQI--------  411 (640)
Q Consensus       347 kl~se~er~ee~~~rleeaEee~-kea~e~~~~areea-----d~aq~E~~elQr~-~~qrlaeIerl~~qI--------  411 (640)
                      -.-...-+..++.++|.-....- .++.+....++.+.     +.++.+...+-+. ..+..+.+.+.+..|        
T Consensus       198 lr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~~~nR~diE~~Y~~kI  277 (546)
T KOG0977|consen  198 LRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKNELALAIREIRAQYEAISRQNRKDIESWYKRKI  277 (546)
T ss_pred             HHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            11111112222222222211000 11122222222222     1122222222222 133333333332222        


Q ss_pred             HHHH-------HHHHHhHHHHhhhcHHHHHHHHH-HHHHHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHH
Q 006565          412 ESLE-------RQKTDLTNEVNRIRESELEALSK-VALLEARVEEREKEIESL---LESNNEQRASTVKKLEDLLESERR  480 (640)
Q Consensus       412 E~lE-------re~e~Le~E~~~l~~sEl~al~k-v~~lE~~vee~e~eiE~L---~~~~~eq~~~~l~~le~~le~~re  480 (640)
                      .++.       -..+....++.+++ +.+..+.. +..++.+-.-..+.|+.|   |..+.......+...+..+...|+
T Consensus       278 ~~i~~~~~~~~~~~~~~rEEl~~~R-~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mRe  356 (546)
T KOG0977|consen  278 QEIRTSAERANVEQNYAREELRRIR-SRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMRE  356 (546)
T ss_pred             HHHHhhhccccchhHHHHHHHHHHH-hcccchhhhhccccccChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHH
Confidence            2222       22223336666777 77777777 777776666666666555   122334456667777777777777


Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Q 006565          481 SRAAANAMAERLSLEVQSAQAKLDEMQQEL  510 (640)
Q Consensus       481 ~l~e~nrrleal~~e~~~lqs~id~Leg~~  510 (640)
                      ++..+--.+..|---...|...|.-+..-+
T Consensus       357 ec~~l~~Elq~LlD~ki~Ld~EI~~YRkLL  386 (546)
T KOG0977|consen  357 ECQQLSVELQKLLDTKISLDAEIAAYRKLL  386 (546)
T ss_pred             HHHHHHHHHHHhhchHhHHHhHHHHHHHHh
Confidence            777777777666666666666666544433

>PHA02562 46 endonuclease subunit; Provisional

Probab=98.27  E-value=0.0067  Score=68.87  Aligned_cols=72  Identities=11%  Similarity=0.164  Sum_probs=36.4

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 006565          259 EFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSF  330 (640)
Q Consensus       259 e~~s~le~kE~kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~  330 (640)
                      +....++.++.+++.+..+....+.++..++.++..+...+..+...+..++..+..+...+......+..+
T Consensus       210 ~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~~  281 (562)
T PHA02562        210 KNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMY  281 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            333445555555555555555555555555555555555555555444444444444444444444444333

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=98.25  E-value=0.022  Score=66.41  Aligned_cols=94  Identities=14%  Similarity=0.197  Sum_probs=62.7

Q ss_pred             hhHHHHHHHHHHhhHHhHHHHHHHhhHHhHHHHHhhHHHHHHHHhHHhhhcchHHhHHhhHHhHHhhhhhhHHHHHHHHH
Q 006565           94 EDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQ  173 (640)
Q Consensus        94 ~~k~~~~~k~le~~~k~~~~~~k~~e~~i~d~kk~~~~~~~~~~~l~~k~~s~ee~~~~l~k~le~~~~e~~ew~~kYe~  173 (640)
                      |....+.--+++.+-+-....-.+|-.-++-+---.-+..++|+.||.+|..+|-....|.-..-+++-..-+-.-..|.
T Consensus        66 dkaglneSviie~sk~vstqetriyRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~  145 (1265)
T KOG0976|consen   66 DKAGLNESVIIEQSKKVSTQETRIYRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIEN  145 (1265)
T ss_pred             HHhhccchhhhhhcchhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33344444556666677888888999999888666667889999999999998877766665555555554444444454


Q ss_pred             HHhHhhHhhHHHhh
Q 006565          174 VLTKQKAMEDQVCS  187 (640)
Q Consensus       174 ~~~~~k~~~~~~AA  187 (640)
                      +-+..-.+.+.+.|
T Consensus       146 ~~srlh~le~eLsA  159 (1265)
T KOG0976|consen  146 LNSRLHKLEDELSA  159 (1265)
T ss_pred             hHHHHHHHHHHHhh
Confidence            44444444444444

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=98.21  E-value=0.033  Score=66.58  Aligned_cols=343  Identities=20%  Similarity=0.246  Sum_probs=166.9

Q ss_pred             HHhhHHHHHHHHhHHhhhcch----HHhHHhh---HHhHHhhhhhhHHHHHHHHHHHhHhhHhhHHHhhhHHHHhhhhHH
Q 006565          126 KKLADDYTSRINNLQGENISL----REKSSSL---SKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTA  198 (640)
Q Consensus       126 kk~~~~~~~~~~~l~~k~~s~----ee~~~~l---~k~le~~~~e~~ew~~kYe~~~~~~k~~~~~~AAGIsklK~Rkke  198 (640)
                      -+-..+.+-+++++..|++.|    ||+.+.|   ...||-.+.++.--+---++.+.+++ -.+.|+-.+..+..+..-
T Consensus       169 ~~~~~hL~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~ea~-ra~~yrdeldalre~aer  247 (1195)
T KOG4643|consen  169 VKKNLHLEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEAH-RADRYRDELDALREQAER  247 (1195)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhHHHHHHHhhhc
Confidence            344556667777888777765    4554443   33455555444444333333344333 233445555555555544


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHhhhHHHhhhHHHHHHHHhHH---HHH
Q 006565          199 AEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKA---------AIVQERTSKEMQQREDVLREEFSST---LAE  266 (640)
Q Consensus       199 ae~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAeek~---------a~L~er~~~~~q~r~~a~ree~~s~---le~  266 (640)
                      .-.+....-.++++++|-+.|.+..-..|...-.--++++         ..+.+.+. +.+.+++-|+.+....   +++
T Consensus       248 ~d~~ykerlmDs~fykdRveelkedN~vLleekeMLeeQLq~lrarse~~tleseii-qlkqkl~dm~~erdtdr~ktee  326 (1195)
T KOG4643|consen  248 PDTTYKERLMDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEII-QLKQKLDDMRSERDTDRHKTEE  326 (1195)
T ss_pred             CCCccchhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHH-HHHHHHHHHHHhhhhHHHHHHH
Confidence            4455555567788888888888887555544443333333         33555554 6666644444443332   333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH-----HhhHHHHHhhHHHHH------HHHHH----HHHHHHHHHHH
Q 006565          267 KEEEMKEKATKIEHAEQCLTTLRL--ELKAAESK-----MRSYEVEISSQKLET------KELSE----KLEAVNAKAQS  329 (640)
Q Consensus       267 kE~kie~~k~ei~~aEq~la~~q~--eL~e~e~k-----Ik~~e~ei~~le~el------~~L~e----kle~~~~eies  329 (640)
                      +..+...+...-.+.--...-.+-  +..+.+++     -..+.+ -..++..|      ..|.+    .++..-++.-.
T Consensus       327 L~eEnstLq~q~eqL~~~~ellq~~se~~E~en~Sl~~e~eqLts-~ralkllLEnrrlt~tleelqsss~Ee~~SK~le  405 (1195)
T KOG4643|consen  327 LHEENSTLQVQKEQLDGQMELLQIFSENEELENESLQVENEQLTS-DRALKLLLENRRLTGTLEELQSSSYEELISKHLE  405 (1195)
T ss_pred             HHHHHHHHHHHHHHhhhhhhHhhhhhcchhhhhhhHHHHHHHhhh-HHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            333333332222211111111100  00000100     000000 00000000      00110    22223333333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH---HHHHHHHHHH
Q 006565          330 FEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENL---AMERMAVIER  406 (640)
Q Consensus       330 ~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~kea~e~~~~areead~aq~E~~elQr~---~~qrlaeIer  406 (640)
                      ++++-.-|......|++++....+...+.....+.+..+.+.+..+.+..+..++.-..+-....+.   .-|+.++.+.
T Consensus       406 leke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~et~e  485 (1195)
T KOG4643|consen  406 LEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQLEAETEE  485 (1195)
T ss_pred             HHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333444444444444444444444444444444443332222222222   2667777777


Q ss_pred             HHHHHHHHHHHHHHhHHHHhhhcHHH-------HHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 006565          407 VQRQIESLERQKTDLTNEVNRIRESE-------LEALSK-VALLEARVEEREKEIESLLESNNEQRASTVKKLED  473 (640)
Q Consensus       407 l~~qIE~lEre~e~Le~E~~~l~~sE-------l~al~k-v~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~  473 (640)
                      +..+|..+...+++-..++.++. +.       +..... +..+-.++++++..+..+ ..++..+..+|+.|..
T Consensus       486 l~~~iknlnk~L~~r~~elsrl~-a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~l-E~ENa~LlkqI~~Lk~  558 (1195)
T KOG4643|consen  486 LLNQIKNLNKSLNNRDLELSRLH-ALKNELKEQYKTCDIQYELLSNKLEELEELLGNL-EEENAHLLKQIQSLKT  558 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHH
Confidence            77888887777777777777766 54       333333 677788888888888877 8888888887777665

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.19  E-value=0.035  Score=66.15  Aligned_cols=221  Identities=21%  Similarity=0.279  Sum_probs=131.6

Q ss_pred             HHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          293 KAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKA  372 (640)
Q Consensus       293 ~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~kea  372 (640)
                      +.+.++...+...+...+.+|.....+...+...++..+........+...|...+....+.+--++..+.-....+..+
T Consensus       674 ~~~~~~~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i  753 (1200)
T KOG0964|consen  674 NESRSELKELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEEI  753 (1200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHH
Confidence            55556666666666666666666666666666666666666666666666666666666666666666665555555555


Q ss_pred             HHHHHHHHHHHHHHHhhHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHH--HHHHHHHHHH
Q 006565          373 TELADRERAEAAAARKGKSE-F-ENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSK--VALLEARVEE  448 (640)
Q Consensus       373 ~e~~~~areead~aq~E~~e-l-Qr~~~qrlaeIerl~~qIE~lEre~e~Le~E~~~l~~sEl~al~k--v~~lE~~vee  448 (640)
                      .-....+..-+.....+... + -.+-.+-...+..+...|..+...+..+..+...+. .-+.+++.  .+.|..++.+
T Consensus       754 ~~~l~~~~~~~~~~e~el~sel~sqLt~ee~e~l~kLn~eI~~l~~kl~~~~~er~~~~-~rk~~le~~l~~kL~~r~~~  832 (1200)
T KOG0964|consen  754 KTSLHKLESQSNYFESELGSELFSQLTPEELERLSKLNKEINKLSVKLRALREERIDIE-TRKTALEANLNTKLYKRVNE  832 (1200)
T ss_pred             HHHHHHHHHHHHhHHHHHhHHHHhhcCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhH
Confidence            55555554444333333332 1 111122233355555666666666666666655555 55666666  5666677777


Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhccc
Q 006565          449 REKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQELTKARLNE  517 (640)
Q Consensus       449 ~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~l~e~nrrleal~~e~~~lqs~id~Leg~~~~~~~~e  517 (640)
                      +..++.++   ....+...+.....++.++...+..+...+..+...++...+.+.++...+++.+.-|
T Consensus       833 l~~ei~~~---~d~~~~~el~~~~~el~~~~~~~e~~~~el~~l~~~i~~~~a~~~~~~~~lE~~~~le  898 (1200)
T KOG0964|consen  833 LEQEIGDL---NDSSRRSELELEKSELESEEKRVEAAILELKTLQDSIDKKKAEIKEIKKELEKAKNLE  898 (1200)
T ss_pred             HHHHhhhc---ccccchhhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777755   3344566666677777777766666666666677777777777777666666555443

>PRK04863 mukB cell division protein MukB; Provisional

Probab=98.19  E-value=0.057  Score=68.52  Aligned_cols=47  Identities=11%  Similarity=0.115  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHhcCCCCcchhhHHHHHHHHHHhhhhcccCCchHHHHH
Q 006565           11 IQSMERKLRAACHSSDASIDNVVKVLDGLISEYETSCHGPGKWQKLA   57 (640)
Q Consensus        11 ~~~me~~l~~ac~~~~a~~~~~~~~l~~~l~~y~~s~~G~g~~~k~~   57 (640)
                      +.++.+=||..-...+-.|+.+|..|...|.+|.-+-...-.-|++.
T Consensus       210 ~~~i~~fl~~yll~e~~~v~~~i~~m~~~l~~~r~t~~~~~~tq~dr  256 (1486)
T PRK04863        210 SSAITRSLRDYLLPENSGVRKAFQDMEAALRENRMTLEAIRVTQSDR  256 (1486)
T ss_pred             HHhHHHHHHHHcCCCChhhhHHHHHHHHHHHHHHHHHHHHHhCccHH
Confidence            44556666666666665577888888888888876654444444333

>PRK11637 AmiB activator; Provisional

Probab=98.10  E-value=0.0041  Score=68.99  Aligned_cols=81  Identities=15%  Similarity=0.221  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          268 EEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQK  347 (640)
Q Consensus       268 E~kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ek  347 (640)
                      ..+++.+..++....+.+..++..+...+.+|..++.++..+..+|..+...+..+..++...+.++..++.++......
T Consensus        46 ~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~  125 (428)
T PRK11637         46 RDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERL  125 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445555555555555555555555555444444444444444444444444444444444444444444444444333


Q ss_pred             H
Q 006565          348 Y  348 (640)
Q Consensus       348 l  348 (640)
                      +
T Consensus       126 l  126 (428)
T PRK11637        126 L  126 (428)
T ss_pred             H
Confidence            3

>PHA02562 46 endonuclease subunit; Provisional

Probab=98.07  E-value=0.0029  Score=71.83  Aligned_cols=10  Identities=30%  Similarity=0.883  Sum_probs=5.3

Q ss_pred             HHHHHHHHHH
Q 006565          166 DWKRKYDQVL  175 (640)
Q Consensus       166 ew~~kYe~~~  175 (640)
                      +|....+..+
T Consensus       114 ~~~~~i~~~~  123 (562)
T PHA02562        114 DFQKYFEQML  123 (562)
T ss_pred             HHHHHHHHHH
Confidence            5555555544

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=97.92  E-value=0.1  Score=61.90  Aligned_cols=264  Identities=17%  Similarity=0.153  Sum_probs=138.8

Q ss_pred             hhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhHHHH
Q 006565          186 CSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLA  265 (640)
Q Consensus       186 AAGIsklK~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAeek~a~L~er~~~~~q~r~~a~ree~~s~le  265 (640)
                      .+.++.|+.+...+..-...+.+--++-+.++.+.--.++-+-..-.-|++++.+|+.... .+++|    .+++...++
T Consensus       275 m~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve-~lkEr----~deletdlE  349 (1243)
T KOG0971|consen  275 MEQQADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVE-ALKER----VDELETDLE  349 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-HHHHH----HHHHHHHHH
Confidence            4444555555555444445555555566666666767777777777778888888888885 88888    666666665


Q ss_pred             HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          266 EKEEEMKEKATKI----EHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDK  341 (640)
Q Consensus       266 ~kE~kie~~k~ei----~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei  341 (640)
                      -+.++++..=...    .---.+|...+..|.+..-+++++.+.-..-.          ..+..+++....++..|..-.
T Consensus       350 ILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~----------qK~~kelE~k~sE~~eL~r~k  419 (1243)
T KOG0971|consen  350 ILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDH----------QKLQKELEKKNSELEELRRQK  419 (1243)
T ss_pred             HHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH----------HHHHHHHHHHhhHHHHHHHHH
Confidence            5555554431100    00112233334444444444444433221111          111122222222222222222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          342 VYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADR---ERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQK  418 (640)
Q Consensus       342 ~~L~ekl~se~er~ee~~~rleeaEee~kea~e~~~~---areead~aq~E~~elQr~~~qrlaeIerl~~qIE~lEre~  418 (640)
                      ..|              ..+++++|..+....+++|.   |.+.+...=.-..++......++-.|..+++--+-.++-.
T Consensus       420 E~L--------------sr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVklLeetv~dlEalee~~EQL~  485 (1243)
T KOG0971|consen  420 ERL--------------SRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLLEETVGDLEALEEMNEQLQ  485 (1243)
T ss_pred             HHH--------------HHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222              22233333333333333332   3444445555556666666777666776655544444444


Q ss_pred             HHhHHHHhhhcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 006565          419 TDLTNEVNRIRESELEALSK-VALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERR  480 (640)
Q Consensus       419 e~Le~E~~~l~~sEl~al~k-v~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re  480 (640)
                      ++...--..|+ .|++-++. +.++..+++.-.+-+=+. .+-+-..++-+..|...|...+.
T Consensus       486 Esn~ele~DLr-eEld~~~g~~kel~~r~~aaqet~yDr-dqTI~KfRelva~Lqdqlqe~~d  546 (1243)
T KOG0971|consen  486 ESNRELELDLR-EELDMAKGARKELQKRVEAAQETVYDR-DQTIKKFRELVAHLQDQLQELTD  546 (1243)
T ss_pred             HHHHHHHHHHH-HHHHHHhhHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHh
Confidence            55544556677 77887777 778888777777777666 55555555555555555554444

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]

Probab=97.88  E-value=0.017  Score=57.80  Aligned_cols=184  Identities=21%  Similarity=0.213  Sum_probs=108.3

Q ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhHHHHHHHH
Q 006565          190 EVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEE  269 (640)
Q Consensus       190 sklK~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAeek~a~L~er~~~~~q~r~~a~ree~~s~le~kE~  269 (640)
                      .-++.----+..||..+.+.|.-+..-..|=.+.++.+.+-+-+.+++...+..+.. .++..           .+.-+.
T Consensus        14 ~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLk-EAk~i-----------aE~adr   81 (205)
T KOG1003|consen   14 QLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLK-EAKHI-----------AEKADR   81 (205)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HHHHH-----------HHHHHH
Confidence            333333444444444444444444444455555555555544444444444444432 22222           233344


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          270 EMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYK  349 (640)
Q Consensus       270 kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~  349 (640)
                      +|++....+.-.+..|...-......+++|..++.+++.+.+.+.+|.-..+.+..+.+.|+.+++.+..-+.+...+=+
T Consensus        82 K~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE  161 (205)
T KOG1003|consen   82 KYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAE  161 (205)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHH
Confidence            77777777777777777777777777888888888888888888888777777777777777777777766666555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          350 SEFERFEEVQERCKVAEKEAKKATELADRERAEAAA  385 (640)
Q Consensus       350 se~er~ee~~~rleeaEee~kea~e~~~~areead~  385 (640)
                      +.......+.+..+..+..+...+..+..+..++|.
T Consensus       162 ~aERsVakLeke~DdlE~kl~~~k~ky~~~~~eLD~  197 (205)
T KOG1003|consen  162 FAERRVAKLEKERDDLEEKLEEAKEKYEEAKKELDE  197 (205)
T ss_pred             HHHHHHHHHcccHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            555555555555555555555555554444444433

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=97.85  E-value=0.14  Score=60.96  Aligned_cols=263  Identities=17%  Similarity=0.227  Sum_probs=144.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          217 VEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAE  296 (640)
Q Consensus       217 l~Ewkrky~~L~~QAKkAeek~a~L~er~~~~~q~r~~a~ree~~s~le~kE~kie~~k~ei~~aEq~la~~q~eL~e~e  296 (640)
                      +.+...++++|.-+-+-...++.+|. +. +....++--.+..+-.+.+.++.++...+.+.+++..--..+..++.+.-
T Consensus       233 vrdLtEkLetlR~kR~EDk~Kl~Ele-km-kiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~a  310 (1243)
T KOG0971|consen  233 VRDLTEKLETLRLKRAEDKAKLKELE-KM-KIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTA  310 (1243)
T ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55556666666543333333333332 22 23344433336666666777888888888888887777777777888888


Q ss_pred             HHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          297 SKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQ----KYKSEFERFEEVQERCKVAEKEAKKA  372 (640)
Q Consensus       297 ~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~e----kl~se~er~ee~~~rleeaEee~kea  372 (640)
                      .-|.=..-+++.+++++..|...++.++.++++++.++..|+.++.+==.    --.-.++.++....|++++=      
T Consensus       311 d~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdal------  384 (1243)
T KOG0971|consen  311 DAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDAL------  384 (1243)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHH------
Confidence            88888888899999999999999999999999999999999888764300    00011233344444444321      


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHH----H-------HH
Q 006565          373 TELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSK----V-------AL  441 (640)
Q Consensus       373 ~e~~~~areead~aq~E~~elQr~~~qrlaeIerl~~qIE~lEre~e~Le~E~~~l~~sEl~al~k----v-------~~  441 (640)
                          -+.|........+-.-+++++-....+++.+.++.++|.++++..+..+..+. ..+++--.    |       -.
T Consensus       385 ----VrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlk-EQVDAAlGAE~MV~qLtdknln  459 (1243)
T KOG0971|consen  385 ----VRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLK-EQVDAALGAEEMVEQLTDKNLN  459 (1243)
T ss_pred             ----HHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhcHHHHHHHHHhhccC
Confidence                11222222222222233333333334445555555555555555555555554 33332211    1       12


Q ss_pred             HHHHHHHHHHHHHHH--HHhhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006565          442 LEARVEEREKEIESL--LESNNEQR----ASTVKKLEDLLESERRSRAAANAMAERL  492 (640)
Q Consensus       442 lE~~vee~e~eiE~L--~~~~~eq~----~~~l~~le~~le~~re~l~e~nrrleal  492 (640)
                      +|.+|..++.++++|  |..-++|+    .+....|..+|+....++.+++++.++-
T Consensus       460 lEekVklLeetv~dlEalee~~EQL~Esn~ele~DLreEld~~~g~~kel~~r~~aa  516 (1243)
T KOG0971|consen  460 LEEKVKLLEETVGDLEALEEMNEQLQESNRELELDLREELDMAKGARKELQKRVEAA  516 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            344444444444333  02222333    2333445555666656666666666653

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=97.84  E-value=0.0032  Score=60.31  Aligned_cols=138  Identities=22%  Similarity=0.351  Sum_probs=95.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          212 SAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLE  291 (640)
Q Consensus       212 RVkDel~Ewkrky~~L~~QAKkAeek~a~L~er~~~~~q~r~~a~ree~~s~le~kE~kie~~k~ei~~aEq~la~~q~e  291 (640)
                      +.+=+...|--+++.+..+.|..++........+. .++.+    ...+..+++..+..+..++..+...++..+..-  
T Consensus         4 ~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~-sL~~K----~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E--   76 (143)
T PF12718_consen    4 ALKLEADNAQDRAEELEAKVKQLEQENEQKEQEIT-SLQKK----NQQLEEELDKLEEQLKEAKEKLEESEKRKSNAE--   76 (143)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH----HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHH--
Confidence            34445556666666666666666666666666664 66666    666666666666666666666666665554332  


Q ss_pred             HHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          292 LKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEV  358 (640)
Q Consensus       292 L~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~  358 (640)
                        .+..+|..++.++......++....++..+..++..+++....|..+...++.+|+....+|..+
T Consensus        77 --~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~~~  141 (143)
T PF12718_consen   77 --QLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYKEA  141 (143)
T ss_pred             --HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence              66777777778888888888888888888888888888888888888888877777766666554

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=97.84  E-value=0.12  Score=59.88  Aligned_cols=116  Identities=15%  Similarity=0.174  Sum_probs=59.5

Q ss_pred             HHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          293 KAAESKMRSYEVEISSQKLETKELSEKLEAVNAK----------AQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERC  362 (640)
Q Consensus       293 ~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~e----------ies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rl  362 (640)
                      ...+..+..+...+.++..+...|...+..+...          ...++.++..+......+...+......|.++..++
T Consensus       306 ~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~l  385 (569)
T PRK04778        306 KYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEEL  385 (569)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            3344444444444444444444444444444444          445555555555555555554444445555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 006565          363 KVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQ  408 (640)
Q Consensus       363 eeaEee~kea~e~~~~areead~aq~E~~elQr~~~qrlaeIerl~  408 (640)
                      +...+.+..+.+........+...+++-..+...+......+..+.
T Consensus       386 eel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ik  431 (569)
T PRK04778        386 EEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIK  431 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555555555555555555555555555444444444443

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=97.84  E-value=0.12  Score=60.22  Aligned_cols=73  Identities=11%  Similarity=0.120  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006565          317 SEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKG  389 (640)
Q Consensus       317 ~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~kea~e~~~~areead~aq~E  389 (640)
                      ......++..+..++.....|..+.-.++..+.++...-.++..+|..++..+....+.+.....++...+..
T Consensus       159 lsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q  231 (617)
T PF15070_consen  159 LSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQ  231 (617)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            3344556666666666666666666667777777766666666666666666666666666665444444443

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=97.80  E-value=0.03  Score=66.08  Aligned_cols=225  Identities=17%  Similarity=0.194  Sum_probs=118.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          264 LAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVY  343 (640)
Q Consensus       264 le~kE~kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~  343 (640)
                      +..+|.+++.+++++.+..+.-+.++..+..+.       +.-..++.+|..+..+.+.++.++.++.+....=++.+..
T Consensus       420 ~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~-------~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~  492 (697)
T PF09726_consen  420 ISRLEADVKKLRAELQSSRQSEQELRSQISSLT-------NNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQ  492 (697)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcc-------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456777777777777777766666666555444       4334555556666666666666666666666666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 006565          344 LEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTN  423 (640)
Q Consensus       344 L~ekl~se~er~ee~~~rleeaEee~kea~e~~~~areead~aq~E~~elQr~~~qrlaeIerl~~qIE~lEre~e~Le~  423 (640)
                      |+.++..+...-..++..|.+-.+.-+.+.+.+..+-..+...+.|-.+..+.      .+..++..+..|.+++...+.
T Consensus       493 LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~------r~~~lE~E~~~lr~elk~kee  566 (697)
T PF09726_consen  493 LEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQ------RRRQLESELKKLRRELKQKEE  566 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence            66666666666666666666544443333332222211111222233332221      122333444444444555555


Q ss_pred             HHhhhcHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 006565          424 EVNRIRESELEALSKV-ALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAK  502 (640)
Q Consensus       424 E~~~l~~sEl~al~kv-~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~l~e~nrrleal~~e~~~lqs~  502 (640)
                      .+..++ .|...+..+ .+-+..++.+...+..+ +.++.+++..|-.-....-.+=.+|.++.|.++....++..-...
T Consensus       567 ~~~~~e-~~~~~lr~~~~e~~~~~e~L~~aL~am-qdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~e  644 (697)
T PF09726_consen  567 QIRELE-SELQELRKYEKESEKDTEVLMSALSAM-QDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKE  644 (697)
T ss_pred             HHHHHH-HHHHHHHHHHhhhhhhHHHHHHHHHHH-HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555 444444443 44444555555555555 666666666665544444455555666666555444433333333


Q ss_pred             H
Q 006565          503 L  503 (640)
Q Consensus       503 i  503 (640)
                      |
T Consensus       645 i  645 (697)
T PF09726_consen  645 I  645 (697)
T ss_pred             H
Confidence            3

; GO: 0016021 integral to membrane

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=97.80  E-value=1.3e-05  Score=94.33  Aligned_cols=147  Identities=18%  Similarity=0.226  Sum_probs=0.0

Q ss_pred             hHHHHHHHHHHhhHHhHHHHHHHhhHHhHHHHHhhHHHHHHHHhHHhhhcchHHhHHhhHHhHHhhhhhhHHHHHHHHHH
Q 006565           95 DNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQV  174 (640)
Q Consensus        95 ~k~~~~~k~le~~~k~~~~~~k~~e~~i~d~kk~~~~~~~~~~~l~~k~~s~ee~~~~l~k~le~~~~e~~ew~~kYe~~  174 (640)
                      +++..|...++.......--+-+++-.+.++++-.+....++..|......+.++...+.+.++.+..+....+.++|..
T Consensus        68 ~~l~~Le~e~~~~~~e~~~~~~~le~~~~~l~~~~~~~~~~~~ele~~~~~l~~~~~~le~el~~~~e~~~~~k~~le~~  147 (722)
T PF05557_consen   68 AQLNQLEYELEQLKQEHERAQLELEKELRELQRQLEREFKRNQELEARLKQLEEREEELEEELEEAEEELEQLKRKLEEE  147 (722)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555444444445666666665555555566667777777777777777777777777666666666554


Q ss_pred             HhHhhHh----hHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          175 LTKQKAM----EDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIV  241 (640)
Q Consensus       175 ~~~~k~~----~~~~AAGIsklK~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAeek~a~L  241 (640)
                      +..-+..    ..++.-.++.++................+...+..+.+.+..++.+..+...+..++..|
T Consensus       148 ~~~L~~E~~~~~~e~~~~~~~l~~~~~~l~~~~~~~e~~~~~l~~e~~~l~~~le~~~~~~~e~e~~~~~L  218 (722)
T PF05557_consen  148 KRRLQREKEQLLEEAREEISSLKNELSELERQAENAESQIQSLESELEELKEQLEELQSELQEAEQQLQEL  218 (722)
T ss_dssp             -----------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4333111    111222233344444444444444444455555555555555555555554444444444

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=97.80  E-value=0.03  Score=66.14  Aligned_cols=93  Identities=11%  Similarity=0.160  Sum_probs=39.9

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          260 FSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQ  339 (640)
Q Consensus       260 ~~s~le~kE~kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~  339 (640)
                      +..++..+..++...++-=.++...++.+...=..+-+.+..+..+-..++.++..|......=+.-+..+|+++.....
T Consensus       423 LE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~  502 (697)
T PF09726_consen  423 LEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERR  502 (697)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444443333333333333222223333333333444444444444444444444444444555444444


Q ss_pred             HHHHHHHHHHHHH
Q 006565          340 DKVYLEQKYKSEF  352 (640)
Q Consensus       340 ei~~L~ekl~se~  352 (640)
                      -+..++.++..+.
T Consensus       503 ~R~~lEkQL~eEr  515 (697)
T PF09726_consen  503 QRASLEKQLQEER  515 (697)
T ss_pred             HHHHHHHHHHHHH
Confidence            4444444444444

; GO: 0016021 integral to membrane

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=97.75  E-value=0.17  Score=59.42  Aligned_cols=110  Identities=14%  Similarity=0.107  Sum_probs=84.5

Q ss_pred             HHHHhhHHHHHHHHhHHhhhcchHHhHHhhHHhHHhhhhhhHHHHHHHHHHHhHhhHhhHHHhhhHHHHhhhhHHHHHHH
Q 006565          124 DKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARL  203 (640)
Q Consensus       124 d~kk~~~~~~~~~~~l~~k~~s~ee~~~~l~k~le~~~~e~~ew~~kYe~~~~~~k~~~~~~AAGIsklK~Rkkeae~RL  203 (640)
                      |-.+.+-+..+++-.|  .-+.+|+.....+=+.+++++-..+--+.|-..++..--.--..-+.|.+|+.+|...+..+
T Consensus        45 ~aeniiqdlrserdal--he~lvdkaglneSviie~sk~vstqetriyRrdv~llEddlk~~~sQiriLQn~c~~lE~ek  122 (1265)
T KOG0976|consen   45 DAENIIQDLRSERDAL--HESLVDKAGLNESVIIEQSKKVSTQETRIYRRDVNLLEDDLKHHESQIRILQNKCLRLEMEK  122 (1265)
T ss_pred             HHHHHHHHHHhhHHHH--HHHHHHHhhccchhhhhhcchhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344555555555444  34667888888888899999999999999999999887777788899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          204 AAAREQALSAQEEVEEWKRKYGVAVREAKAAL  235 (640)
Q Consensus       204 ~at~enL~RVkDel~Ewkrky~~L~~QAKkAe  235 (640)
                      .+......+++|-+.|-+--++.+-..+-..+
T Consensus       123 q~lQ~ti~~~q~d~ke~etelE~~~srlh~le  154 (1265)
T KOG0976|consen  123 QKLQDTIQGAQDDKKENEIEIENLNSRLHKLE  154 (1265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            99988888888877666666665555444444

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=97.75  E-value=0.23  Score=60.78  Aligned_cols=189  Identities=12%  Similarity=0.157  Sum_probs=92.5

Q ss_pred             hhHHHHHHHHHHHhHhhHhhHHHh-hhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          163 EISDWKRKYDQVLTKQKAMEDQVC-SEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIV  241 (640)
Q Consensus       163 e~~ew~~kYe~~~~~~k~~~~~~A-AGIsklK~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAeek~a~L  241 (640)
                      ++.+--+.|++.|...+.....+. ..++.++..-++...+++...+...-+.-.+...+..++.+..    ..+.+..-
T Consensus       462 ~~~~~~keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~----~~~~~~~~  537 (1317)
T KOG0612|consen  462 ELEEMDKELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQK----KNDNAADS  537 (1317)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence            445566677777776654444444 3555566666666666665555544444333333333333311    11111111


Q ss_pred             HHhhhHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHH
Q 006565          242 QERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLE  321 (640)
Q Consensus       242 ~er~~~~~q~r~~a~ree~~s~le~kE~kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle  321 (640)
                      ..+.+ .+...+++....+.+++           .+..........+...+....+.-+..+..+..++.....|.....
T Consensus       538 ~~kv~-~~rk~le~~~~d~~~e~-----------~~~~kl~~~~~e~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~  605 (1317)
T KOG0612|consen  538 LEKVN-SLRKQLEEAELDMRAES-----------EDAGKLRKHSKELSKQIQQELEENRDLEDKLSLLEESKSKLSKENK  605 (1317)
T ss_pred             HhhHH-HHHHHHHHhhhhhhhhH-----------HHHhhHhhhhhhhhHHHHHHhhccccHHHHHHHHHHHHHHHHHHHH
Confidence            12221 11111111122222221           2222223333333444444444555666666666666666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          322 AVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEK  367 (640)
Q Consensus       322 ~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEe  367 (640)
                      .+...++........+...+..+...+.+...........+..++.
T Consensus       606 ~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~e  651 (1317)
T KOG0612|consen  606 KLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKELLKVEE  651 (1317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHH
Confidence            6666666666666666666666666666666555555555555444

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]

Probab=97.66  E-value=0.081  Score=53.06  Aligned_cols=120  Identities=23%  Similarity=0.269  Sum_probs=85.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 006565          389 GKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSK-VALLEARVEEREKEIESLLESNNEQRAST  467 (640)
Q Consensus       389 E~~elQr~~~qrlaeIerl~~qIE~lEre~e~Le~E~~~l~~sEl~al~k-v~~lE~~vee~e~eiE~L~~~~~eq~~~~  467 (640)
                      ...+.-+.+.=...++++....-+.-+..+..|..+...+. +.+..|+. ...+..+.+..+..+..+ ..+..+-.-.
T Consensus        82 K~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~-~nlk~l~~~ee~~~q~~d~~e~~ik~l-tdKLkEaE~r  159 (205)
T KOG1003|consen   82 KYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILD-SNLKSLSAKEEKLEQKEEKYEEELKEL-TDKLKEAETR  159 (205)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhH-hHHHHHHHHHHHHhhhHHHHHHHHHHH-HHHHhhhhhh
Confidence            33344666777778888888888888889999999999998 88888888 888888888888888877 6666444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Q 006565          468 VKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQEL  510 (640)
Q Consensus       468 l~~le~~le~~re~l~e~nrrleal~~e~~~lqs~id~Leg~~  510 (640)
                      -+..+..+..+...+.....++......+..++..||-.-+.+
T Consensus       160 AE~aERsVakLeke~DdlE~kl~~~k~ky~~~~~eLD~~~~~L  202 (205)
T KOG1003|consen  160 AEFAERRVAKLEKERDDLEEKLEEAKEKYEEAKKELDETLQEL  202 (205)
T ss_pred             HHHHHHHHHHHcccHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence            4444445555555555666666777777777777777654443

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.61  E-value=0.27  Score=57.70  Aligned_cols=190  Identities=16%  Similarity=0.157  Sum_probs=88.2

Q ss_pred             HHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHH-Hh
Q 006565          183 DQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREE-FS  261 (640)
Q Consensus       183 ~~~AAGIsklK~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAeek~a~L~er~~~~~q~r~~a~ree-~~  261 (640)
                      +-|.-|-+.|..|+..++..-.  ++.-.+.+.+-.||.++-+....|-.+++..+..-.++.. +++.+    |++ -.
T Consensus       320 eNy~kGqaELerRRq~leeqqq--reree~eqkEreE~ekkererqEqErk~qlElekqLerQR-eiE~q----rEEerk  392 (1118)
T KOG1029|consen  320 ENYEKGQAELERRRQALEEQQQ--REREEVEQKEREEEEKKERERQEQERKAQLELEKQLERQR-EIERQ----REEERK  392 (1118)
T ss_pred             HhHhhhhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH----HHHHHH
Confidence            4466677777666666665433  3344455566677877777666666665543333112211 22222    111 11


Q ss_pred             HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          262 STLAEKEEEMKEKA--TKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQ  339 (640)
Q Consensus       262 s~le~kE~kie~~k--~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~  339 (640)
                      ..++..|+--+++.  ..+.=-.-+.+.|...-+.-...|--+......++.++..|+.++..+..++.--.-.+-..++
T Consensus       393 keie~rEaar~ElEkqRqlewErar~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt  472 (1118)
T KOG1029|consen  393 KEIERREAAREELEKQRQLEWERARRQEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKT  472 (1118)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHH
Confidence            11111111000000  0000000011111111122222233344455555555556666666665555555555566666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          340 DKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRE  379 (640)
Q Consensus       340 ei~~L~ekl~se~er~ee~~~rleeaEee~kea~e~~~~a  379 (640)
                      +|..++...+.....+..+..++++.+...-...-+-...
T Consensus       473 ~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l  512 (1118)
T KOG1029|consen  473 EIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQEL  512 (1118)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            6666666666666666666666666655554444443333

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=97.59  E-value=0.35  Score=58.31  Aligned_cols=254  Identities=16%  Similarity=0.197  Sum_probs=146.6

Q ss_pred             hhhcCchhHHHHHHHHHHhhHHhHHHHHHHhhHHhHHHHHhhHHHHHHHHhHHhhhcchHHhHHhhHHhHHhhhhhhHHH
Q 006565           88 LKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDW  167 (640)
Q Consensus        88 ~~c~s~~~k~~~~~k~le~~~k~~~~~~k~~e~~i~d~kk~~~~~~~~~~~l~~k~~s~ee~~~~l~k~le~~~~e~~ew  167 (640)
                      .-|---+.|+-.|..+|    ..+.+...++..-|.|++.-++...-++-++..--+    ++..-...|++...-+--|
T Consensus       177 velAdle~kir~LrqEl----EEK~enll~lr~eLddleae~~klrqe~~e~l~ea~----ra~~yrdeldalre~aer~  248 (1195)
T KOG4643|consen  177 VELADLEKKIRTLRQEL----EEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEAH----RADRYRDELDALREQAERP  248 (1195)
T ss_pred             HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhhhhhHHHHHHHhhhcC
Confidence            33333344444444433    455677777777777777777777666666654433    3345567888888888888


Q ss_pred             HHHHHHHHhHhhHhhHHHhhhHHHHhhh-------hHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          168 KRKYDQVLTKQKAMEDQVCSEIEVLKSR-------STAAEARLAAAREQA--LSAQEEVEEWKRKYGVAVREAKAALEKA  238 (640)
Q Consensus       168 ~~kYe~~~~~~k~~~~~~AAGIsklK~R-------kkeae~RL~at~enL--~RVkDel~Ewkrky~~L~~QAKkAeek~  238 (640)
                      =-+|-..+-    +++.|++++-.+|.-       +.=++..|..++.+-  -...-+|.-.+.+++.+..+--..+.+.
T Consensus       249 d~~ykerlm----Ds~fykdRveelkedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kt  324 (1195)
T KOG4643|consen  249 DTTYKERLM----DSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKT  324 (1195)
T ss_pred             CCccchhhh----hhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            888887654    456677777777765       333444444444444  2334556667777777777777777777


Q ss_pred             HHHHHhhhHHHhhhHHHHHHHHhHHHHHHHH-------HHHHHHH------------HHHHHHHHHHHH----HHHHHHH
Q 006565          239 AIVQERTSKEMQQREDVLREEFSSTLAEKEE-------EMKEKAT------------KIEHAEQCLTTL----RLELKAA  295 (640)
Q Consensus       239 a~L~er~~~~~q~r~~a~ree~~s~le~kE~-------kie~~k~------------ei~~aEq~la~~----q~eL~e~  295 (640)
                      +.|..... .++-.    .+++....+-+..       .-.-+..            -+.+.......+    ...+.+.
T Consensus       325 eeL~eEns-tLq~q----~eqL~~~~ellq~~se~~E~en~Sl~~e~eqLts~ralkllLEnrrlt~tleelqsss~Ee~  399 (1195)
T KOG4643|consen  325 EELHEENS-TLQVQ----KEQLDGQMELLQIFSENEELENESLQVENEQLTSDRALKLLLENRRLTGTLEELQSSSYEEL  399 (1195)
T ss_pred             HHHHHHHH-HHHHH----HHHhhhhhhHhhhhhcchhhhhhhHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHhhhhHHHH
Confidence            77666653 55555    3333333222111       1111111            111111111111    2255777


Q ss_pred             HHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          296 ESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEV  358 (640)
Q Consensus       296 e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~  358 (640)
                      .+++-.++++-+.+......|++++.........++.....|..|...|.+.......-+.+.
T Consensus       400 ~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq  462 (1195)
T KOG4643|consen  400 ISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQ  462 (1195)
T ss_pred             HHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            777777777666677777777777777766666666666666666666655555555444433

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=97.58  E-value=3e-05  Score=91.09  Aligned_cols=30  Identities=20%  Similarity=0.340  Sum_probs=0.0

Q ss_pred             HHhHHHHHHhhhcCchhHHHHHHHHHHhhH
Q 006565           79 IGSERSSLMLKYRSIEDNMKLLKKQLEDSE  108 (640)
Q Consensus        79 i~~~~~~l~~~c~s~~~k~~~~~k~le~~~  108 (640)
                      +..++..|.-.|+-.+..+..|....+.+.
T Consensus       184 ~~~e~d~l~q~~~el~~~i~~L~~e~~~L~  213 (713)
T PF05622_consen  184 LVAERDELAQRCHELEKQISDLQEEKESLQ  213 (713)
T ss_dssp             ------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHhh
Confidence            334455555566665555555555544444

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=97.52  E-value=0.022  Score=54.64  Aligned_cols=55  Identities=18%  Similarity=0.270  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          329 SFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEA  383 (640)
Q Consensus       329 s~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~kea~e~~~~areea  383 (640)
                      ++.+++..|..++......+....+++.++..+.+.++..++.+..+.+.....+
T Consensus        77 ~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~  131 (143)
T PF12718_consen   77 QLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKY  131 (143)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHH
Confidence            4555555555555555555555555555555555555555554444444443333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=97.47  E-value=0.51  Score=57.48  Aligned_cols=22  Identities=18%  Similarity=0.312  Sum_probs=14.0

Q ss_pred             HHhhhhcccCCchHHHHHHHHHHh
Q 006565           40 ISEYETSCHGPGKWQKLATFLQQS   63 (640)
Q Consensus        40 l~~y~~s~~G~g~~~k~~~~L~~~   63 (640)
                      .+.|.-++++|--  .+..||...
T Consensus       131 ~~~f~~~v~l~QG--e~~~fl~~~  152 (908)
T COG0419         131 KDTFTRSVYLPQG--EFDAFLKSK  152 (908)
T ss_pred             HHHHhHHheeccH--hHHHHHhcC
Confidence            4678888887732  566666543

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=97.44  E-value=0.41  Score=55.69  Aligned_cols=97  Identities=13%  Similarity=0.160  Sum_probs=63.3

Q ss_pred             HHHHHHHhHHhhhcchHHhHHhhHHhHHhhhhhhHHH---HHHHHHHHhHhhHhhHHHhhhHHHHhhhhHHHHHHHHHHH
Q 006565          131 DYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDW---KRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAR  207 (640)
Q Consensus       131 ~~~~~~~~l~~k~~s~ee~~~~l~k~le~~~~e~~ew---~~kYe~~~~~~k~~~~~~AAGIsklK~Rkkeae~RL~at~  207 (640)
                      ...-+.+.|+.+|.-=|..+.-|.=.|.-+...+...   .+.-.+.+..-+...|.+.+.....|.-+..+..-..+..
T Consensus       237 ~kEkqvs~L~~q~~eKen~~kdl~~~l~es~~~~~qLeE~~~~q~E~Lkes~~~qe~L~~eL~~~K~slq~~~~tq~~le  316 (786)
T PF05483_consen  237 DKEKQVSLLQTQLKEKENKIKDLLLLLQESQDKCNQLEEKTKEQHENLKESNEEQEHLLQELEDIKQSLQESESTQKALE  316 (786)
T ss_pred             hHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344566777777777888888877777777766543   3444556666777777777777777776666666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 006565          208 EQALSAQEEVEEWKRKYGVA  227 (640)
Q Consensus       208 enL~RVkDel~Ewkrky~~L  227 (640)
                      .+|+-+...+..+...-++-
T Consensus       317 ~~lq~~~k~~~qlt~eKe~~  336 (786)
T PF05483_consen  317 EDLQQATKTLIQLTEEKEAQ  336 (786)
T ss_pred             HHHHHHHHHHHHHHHhHHHH
Confidence            66666665555554443333

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=97.37  E-value=0.29  Score=52.19  Aligned_cols=222  Identities=18%  Similarity=0.261  Sum_probs=109.7

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHH---HHHHH
Q 006565          257 REEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQ---SFERE  333 (640)
Q Consensus       257 ree~~s~le~kE~kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eie---s~e~e  333 (640)
                      |.++..++.....+-+.+.++...+...+.+++....++..++..+-++..-....+..|-..+..+...+.   ..-..
T Consensus        29 R~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~~~~~~~  108 (294)
T COG1340          29 RDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFNLGGRS  108 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCC
Confidence            444444444444455556666666666666666666666666666666666555666666666655555555   33445


Q ss_pred             HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 006565          334 ARIMEQDKVYLEQKYKSEF---ERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQ  410 (640)
Q Consensus       334 l~~L~~ei~~L~ekl~se~---er~ee~~~rleeaEee~kea~e~~~~areead~aq~E~~elQr~~~qrlaeIerl~~q  410 (640)
                      +..+..+|..|...+.+.-   ..-..+..++..+.+.+..+....... ..+.....++..+..........|..+-.+
T Consensus       109 ~~~ler~i~~Le~~~~T~~L~~e~E~~lvq~I~~L~k~le~~~k~~e~~-~~~~el~aei~~lk~~~~e~~eki~~la~e  187 (294)
T COG1340         109 IKSLEREIERLEKKQQTSVLTPEEERELVQKIKELRKELEDAKKALEEN-EKLKELKAEIDELKKKAREIHEKIQELANE  187 (294)
T ss_pred             HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5566666666655555433   111222233333333322222111111 111122233333333344444444444455


Q ss_pred             HHHHHHHHHHhHHHHhhhcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          411 IESLERQKTDLTNEVNRIRESELEALSK-VALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAM  488 (640)
Q Consensus       411 IE~lEre~e~Le~E~~~l~~sEl~al~k-v~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~l~e~nrr  488 (640)
                      ++....++..+-.+.+.++ .+.+.+.. +..+-..+++...++..+        +..|..++..|..++..-....++
T Consensus       188 aqe~he~m~k~~~~~De~R-keade~he~~ve~~~~~~e~~ee~~~~--------~~elre~~k~ik~l~~~~~~~~~~  257 (294)
T COG1340         188 AQEYHEEMIKLFEEADELR-KEADELHEEFVELSKKIDELHEEFRNL--------QNELRELEKKIKALRAKEKAAKRR  257 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555555555666 55555555 555555555555555555        455555555555555444443333

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=97.30  E-value=0.34  Score=51.66  Aligned_cols=89  Identities=11%  Similarity=0.248  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          405 ERVQRQIESLERQKTDLTNEVNRIRESELEALSK-VALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRA  483 (640)
Q Consensus       405 erl~~qIE~lEre~e~Le~E~~~l~~sEl~al~k-v~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~l~  483 (640)
                      ..+..+++.+......+-..+..+. .+.+.+.. ...+-...++.+.+.+.+ -.........+..+...+......+.
T Consensus       161 ~el~aei~~lk~~~~e~~eki~~la-~eaqe~he~m~k~~~~~De~Rkeade~-he~~ve~~~~~~e~~ee~~~~~~elr  238 (294)
T COG1340         161 KELKAEIDELKKKAREIHEKIQELA-NEAQEYHEEMIKLFEEADELRKEADEL-HEEFVELSKKIDELHEEFRNLQNELR  238 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            3333444444444444444444444 44444444 444445555555555555 44444444444444444444444444


Q ss_pred             HHHHHHHHhhHH
Q 006565          484 AANAMAERLSLE  495 (640)
Q Consensus       484 e~nrrleal~~e  495 (640)
                      ..+..+.++...
T Consensus       239 e~~k~ik~l~~~  250 (294)
T COG1340         239 ELEKKIKALRAK  250 (294)
T ss_pred             HHHHHHHHHHHH
Confidence            444444444443

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=97.30  E-value=0.00015  Score=85.43  Aligned_cols=233  Identities=18%  Similarity=0.228  Sum_probs=0.0

Q ss_pred             HHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH--HHHHHHHHHhhhHHHhhhHHHHHHHH
Q 006565          184 QVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVRE-AKAA--LEKAAIVQERTSKEMQQREDVLREEF  260 (640)
Q Consensus       184 ~~AAGIsklK~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L~~Q-AKkA--eek~a~L~er~~~~~q~r~~a~ree~  260 (640)
                      ++-..+..+....+.+...+......++.....+.+...++..|... +.-+  ......|+..+. ..... .++...+
T Consensus       175 ~l~~~~~~~e~~~~~l~~e~~~l~~~le~~~~~~~e~e~~~~~L~~~q~~~~e~e~~i~~Le~el~-~~~~~-~~i~k~l  252 (722)
T PF05557_consen  175 ELERQAENAESQIQSLESELEELKEQLEELQSELQEAEQQLQELQASQASLAEAEQKIKELEAELK-DQESD-AEINKEL  252 (722)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-hHhhH-HHHHHHH
Confidence            33344455556666666667777777777777666666666666332 1111  122222222221 11111 0011111


Q ss_pred             hH---HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH---hhHHHHHhhHHHHHHHHHHHHHHHHHHHHH--
Q 006565          261 SS---TLAEKEEEMKEKATKIEHAEQCLTTL---RLELKAAESKM---RSYEVEISSQKLETKELSEKLEAVNAKAQS--  329 (640)
Q Consensus       261 ~s---~le~kE~kie~~k~ei~~aEq~la~~---q~eL~e~e~kI---k~~e~ei~~le~el~~L~ekle~~~~eies--  329 (640)
                      ..   .+..++.....+..++....+.....   ..+...+..++   ...+.++..++-+...|..++..|.+-+..  
T Consensus       253 ~~ql~~i~~LE~en~~l~~Elk~Lr~~~~n~elLeEe~~sLq~kl~~~E~~~~el~~lq~e~~~Le~el~sW~sl~~~~~  332 (722)
T PF05557_consen  253 KEQLAHIRELEKENRRLREELKHLRQSQENVELLEEEKRSLQRKLERLEELEEELAELQLENEKLEDELNSWESLLQDIG  332 (722)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            11   12233333333333332222221111   12222222222   222244444444444444444444443332  


Q ss_pred             --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 006565          330 --------FEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERM  401 (640)
Q Consensus       330 --------~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~kea~e~~~~areead~aq~E~~elQr~~~qrl  401 (640)
                              ....+..+..+...|..++.+....+......+..++.++..+...+..++..+.........+++...=..
T Consensus       333 ~~~~sPe~l~~~l~~lq~~~~~L~ek~g~~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~  412 (722)
T PF05557_consen  333 LEFDSPEDLARALVQLQQENASLTEKLGSLQSELRELEEEIQELEQEKEQLLKEIEELEASLEALKKLIRRLERQKALAT  412 (722)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                    233444455555555555555555555555555555555555556666665555555555555555555555


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 006565          402 AVIERVQRQIESLERQK  418 (640)
Q Consensus       402 aeIerl~~qIE~lEre~  418 (640)
                      .+++-++++++....+.
T Consensus       413 kE~d~LR~~L~syd~e~  429 (722)
T PF05557_consen  413 KERDYLRAQLKSYDKEE  429 (722)
T ss_dssp             -----------------
T ss_pred             HHHHHHHHHHHHhhhhh
Confidence            55566666555555443

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=97.29  E-value=0.45  Score=52.98  Aligned_cols=72  Identities=17%  Similarity=0.255  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          270 EMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDK  341 (640)
Q Consensus       270 kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei  341 (640)
                      .++....++...++.++..+..+..++..|+.++.++..++.++......+..+...|...+..+..|..+.
T Consensus        39 ~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~  110 (420)
T COG4942          39 QLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE  110 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence            445555555555556666666666666666666666666666666666666665555555555555555444

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=97.28  E-value=0.38  Score=51.77  Aligned_cols=104  Identities=14%  Similarity=0.191  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 006565          312 ETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKS  391 (640)
Q Consensus       312 el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~kea~e~~~~areead~aq~E~~  391 (640)
                      ++..+......+...+..|......+..-+.--.+-|.+..+.|+...+.+..++++.......++       ....-..
T Consensus       203 ~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e-------~~n~~l~  275 (309)
T PF09728_consen  203 QVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWE-------KSNKALI  275 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhHHHH
Confidence            334444444444444444444444444444444444444444444444444444444333333333       3344444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 006565          392 EFENLAMERMAVIERVQRQIESLERQKTDLT  422 (640)
Q Consensus       392 elQr~~~qrlaeIerl~~qIE~lEre~e~Le  422 (640)
                      .+-........+++.+..+++.|+.-|-.|+
T Consensus       276 ~m~eer~~~~~~~~~~~~k~~kLe~LcRaLQ  306 (309)
T PF09728_consen  276 EMAEERQKLEKELEKLKKKIEKLEKLCRALQ  306 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4444445555555666666665555554443

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=97.28  E-value=0.13  Score=59.93  Aligned_cols=37  Identities=16%  Similarity=0.335  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 006565          439 VALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLE  476 (640)
Q Consensus       439 v~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le  476 (640)
                      +-++-+.|.-++.+|+.. -.+...++.+|..+.+.+.
T Consensus       493 IlEIv~NI~KQk~eI~KI-l~DTr~lQkeiN~l~gkL~  529 (594)
T PF05667_consen  493 ILEIVKNIRKQKEEIEKI-LSDTRELQKEINSLTGKLD  529 (594)
T ss_pred             HHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence            667777777777777777 6666666666666666554

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=97.28  E-value=0.66  Score=54.50  Aligned_cols=66  Identities=8%  Similarity=0.153  Sum_probs=41.8

Q ss_pred             HHhHHHHHHHhhH--HhHHHHHhhHHHHHHHHhHHhhhcchHHhHHhhHHhHHhhhhhhHHHHHHHHH
Q 006565          108 ERYKSEYLKRYDD--AINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQ  173 (640)
Q Consensus       108 ~k~~~~~~k~~e~--~i~d~kk~~~~~~~~~~~l~~k~~s~ee~~~~l~k~le~~~~e~~ew~~kYe~  173 (640)
                      ..+...|.+++..  ++.++.+-.+.+..++.+++.+...++.....+..+++.+.....+....|..
T Consensus       188 ~~dl~~~~~~~~~~~~~~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~  255 (650)
T TIGR03185       188 AGDLTNVLRRRKKSELPSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRS  255 (650)
T ss_pred             HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455554433  33444666677777777777777777777777777777777666666666555

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=97.19  E-value=0.58  Score=52.15  Aligned_cols=67  Identities=15%  Similarity=0.237  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          283 QCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYK  349 (640)
Q Consensus       283 q~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~  349 (640)
                      +++...+.++..++.+|.........++.+|+.++....++...+-.....+..+...|..+...+.
T Consensus        38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~  104 (420)
T COG4942          38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLN  104 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHH
Confidence            4444445555555555555555555555555555554444444444444444444444444433333

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=97.19  E-value=0.2  Score=54.07  Aligned_cols=170  Identities=19%  Similarity=0.251  Sum_probs=89.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Q 006565          278 IEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFE-------REARIMEQDKVYLEQKYKS  350 (640)
Q Consensus       278 i~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e-------~el~~L~~ei~~L~ekl~s  350 (640)
                      +...-+.+..+..+|.....+...|-.....++.+-..|..++..+.-....+-       +.-..|.+-+....+.-..
T Consensus         4 L~SK~eAL~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~   83 (319)
T PF09789_consen    4 LQSKSEALLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKK   83 (319)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHH
Confidence            344455566667777777777777777777777766666666655552222111       1222233333333333333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcH
Q 006565          351 EFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRE  430 (640)
Q Consensus       351 e~er~ee~~~rleeaEee~kea~e~~~~areead~aq~E~~elQr~~~qrlaeIerl~~qIE~lEre~e~Le~E~~~l~~  430 (640)
                      ....+..+..++.+++..++-.++.....+......-...+-  .....+..+++.++.++..+++.+..+.+++..+- 
T Consensus        84 L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~--~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~-  160 (319)
T PF09789_consen   84 LKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFP--HEREDLVEQLEKLREQIEQLERDLQSLLDEKEELV-  160 (319)
T ss_pred             HHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            333344444444444444444444444443333222111111  55566667777777777777777777777777777 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          431 SELEALSKVALLEARVEEREKEIESL  456 (640)
Q Consensus       431 sEl~al~kv~~lE~~vee~e~eiE~L  456 (640)
                      .|-+++..      .++.++.++..+
T Consensus       161 ~ERD~yk~------K~~RLN~ELn~~  180 (319)
T PF09789_consen  161 TERDAYKC------KAHRLNHELNYI  180 (319)
T ss_pred             HHHHHHHH------HHHHHHHHHHHH
Confidence            66666554      344444444444

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=97.18  E-value=0.83  Score=53.66  Aligned_cols=63  Identities=19%  Similarity=0.217  Sum_probs=31.2

Q ss_pred             hHHhhhhhhHHHHHHHHHHHhHhhHhhHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          156 TVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVRE  230 (640)
Q Consensus       156 ~le~~~~e~~ew~~kYe~~~~~~k~~~~~~AAGIsklK~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L~~Q  230 (640)
                      .++....+..+|.+++...+.            ++....+..+++.++.....+.+.+...+..+..+++.+..+
T Consensus       183 ~~~~L~~dl~~~~~~~~~~~~------------~~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~  245 (650)
T TIGR03185       183 LIDRLAGDLTNVLRRRKKSEL------------PSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRS  245 (650)
T ss_pred             HHHHHHHHHHHHHHHHHhccc------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            366677777777766544331            122334444444444444444444444444444444444433

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.12  E-value=1.2  Score=54.36  Aligned_cols=154  Identities=16%  Similarity=0.213  Sum_probs=63.4

Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhHHHHHHHHHH
Q 006565          192 LKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEM  271 (640)
Q Consensus       192 lK~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAeek~a~L~er~~~~~q~r~~a~ree~~s~le~kE~ki  271 (640)
                      +|..+.+++.- ..+.....+++-+.+=|+  +=.++.+-.++.+.++.+++.+. .+..+    +...       +.++
T Consensus       193 aK~~k~eaeky-~~lkde~~~~q~e~~L~q--LfhvE~~i~k~~~els~~~~ei~-~~~~~----~d~~-------e~ei  257 (1141)
T KOG0018|consen  193 AKEGKEEAEKY-QRLKDEKGKAQKEQFLWE--LFHVEACIEKANDELSRLNAEIP-KLKER----MDKK-------EREI  257 (1141)
T ss_pred             HHhhHHHHHHH-HHHHHHHHHHHHHHHHHH--HhhhhhhHhhhhHHHHHHhhhhH-HHHhh----hhHH-------HHHH
Confidence            34444444442 334444445544444443  22334444455566666666653 55555    3333       3333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          272 KEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSE  351 (640)
Q Consensus       272 e~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se  351 (640)
                      ...+.+.......+..+-..+..++..+.. .-++=....+...+..++..+.-.+...+.....+...+..++..+...
T Consensus       258 ~~~k~e~~ki~re~~~~Dk~i~~ke~~l~e-rp~li~~ke~~~~~k~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av  336 (1141)
T KOG0018|consen  258 RVRKKERGKIRRELQKVDKKISEKEEKLAE-RPELIKVKENASHLKKRLEEIEKDIETAKKDYRALKETIERLEKELKAV  336 (1141)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHhhcchhhccchhHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            333333333333333333333333333333 1111112233333344444444444444444444444444444444444


Q ss_pred             HHHHHHHHHH
Q 006565          352 FERFEEVQER  361 (640)
Q Consensus       352 ~er~ee~~~r  361 (640)
                      .......+++
T Consensus       337 ~~~~~~feke  346 (1141)
T KOG0018|consen  337 EGAKEEFEKE  346 (1141)
T ss_pred             HHHHHHHHHH
Confidence            4443333333

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=97.10  E-value=0.94  Score=52.87  Aligned_cols=308  Identities=19%  Similarity=0.164  Sum_probs=155.0

Q ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhHHHHHHHHH
Q 006565          191 VLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEE  270 (640)
Q Consensus       191 klK~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAeek~a~L~er~~~~~q~r~~a~ree~~s~le~kE~k  270 (640)
                      .|-.|..+++.|..++-..-+.++-++.-++.-+-...+     .+.++.-.+.++ .+...    =+.+......-.+.
T Consensus       406 e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l~-----~DeLaEkdE~I~-~lm~E----GEkLSK~ql~qs~i  475 (961)
T KOG4673|consen  406 EYHQRVATLEKKVQALTKERDALRREQKSLKKELAAALL-----KDELAEKDEIIN-QLMAE----GEKLSKKQLAQSAI  475 (961)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhh-----hHHHHHHHHHHH-HHHHH----HHHhHHHHHHHHHH
Confidence            344555566666665554444444333333332222111     155566666665 66655    55666665555667


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          271 MKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKS  350 (640)
Q Consensus       271 ie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~s  350 (640)
                      |..+++++++.+--.....+.+..+.++...+..-+...+.--+.+.+......++..+.+.....+.-.+..|+.+...
T Consensus       476 IkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a  555 (961)
T KOG4673|consen  476 IKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQALA  555 (961)
T ss_pred             HHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            77777777766643333333333333333333333333333344455555555666666666666666666677777777


Q ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 006565          351 EFERFEEVQERCK-VAEKEAKKATELADRERAEAAAAR-----KGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNE  424 (640)
Q Consensus       351 e~er~ee~~~rle-eaEee~kea~e~~~~areead~aq-----~E~~elQr~~~qrlaeIerl~~qIE~lEre~e~Le~E  424 (640)
                      +...|+++...+. ..--.-++++.+...+-..+...|     +|...+.+.-+=| -+|..|+++++..+++++.+..+
T Consensus       556 ~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R-~Ei~~LqrRlqaaE~R~eel~q~  634 (961)
T KOG4673|consen  556 EQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKEQQAARREDMFR-GEIEDLQRRLQAAERRCEELIQQ  634 (961)
T ss_pred             HHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhh
Confidence            7766666665331 110011133333222222222221     1222222222222 23566666666666665554433


Q ss_pred             -----------HhhhcHH-----------H---HHHHHH-HHHHHHHHHHHHHHHHHHHHhhH----HHHHHHHHHHHHH
Q 006565          425 -----------VNRIRES-----------E---LEALSK-VALLEARVEEREKEIESLLESNN----EQRASTVKKLEDL  474 (640)
Q Consensus       425 -----------~~~l~~s-----------E---l~al~k-v~~lE~~vee~e~eiE~L~~~~~----eq~~~~l~~le~~  474 (640)
                                 |..|..+           |   .+.+.. .+.+-..|.+-+.+.++||.-.+    ..++..+  ++.+
T Consensus       635 v~~TTrPLlRQIE~lQ~tl~~~~tawereE~~l~~rL~dSQtllr~~v~~eqgekqElL~~~~~l~s~~~q~sl--lraE  712 (961)
T KOG4673|consen  635 VPETTRPLLRQIEALQETLSKAATAWEREERSLNERLSDSQTLLRINVLEEQGEKQELLSLNFSLPSSPIQLSL--LRAE  712 (961)
T ss_pred             ccccccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhHHHHHHHhcCCCcchhHHHH--HHHH
Confidence                       2222211           1   122222 44445555555566666644444    2233333  5666


Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhh
Q 006565          475 LESERRSRAAANAMAERLSLEVQSAQAKLDEMQQELT  511 (640)
Q Consensus       475 le~~re~l~e~nrrleal~~e~~~lqs~id~Leg~~~  511 (640)
                      -.-++..+..+..|+...+-++..+|..++.++|...
T Consensus       713 ~~~l~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~  749 (961)
T KOG4673|consen  713 QGQLSKSLEKERNRAAENRQEYLAAQEEADTLEGRAN  749 (961)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            6667777777777777788888888888888777663

>PRK11281 hypothetical protein; Provisional

Probab=97.10  E-value=0.73  Score=57.29  Aligned_cols=50  Identities=12%  Similarity=0.156  Sum_probs=32.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 006565          459 SNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQ  508 (640)
Q Consensus       459 ~~~eq~~~~l~~le~~le~~re~l~e~nrrleal~~e~~~lqs~id~Leg  508 (640)
                      ..|.++.+.+......+..+..+..+....++.+......++..++.+.|
T Consensus       285 ~~N~~Ls~~L~~~t~~~~~l~~~~~~~~~~l~~~~q~~~~i~eqi~~l~~  334 (1113)
T PRK11281        285 EINLQLSQRLLKATEKLNTLTQQNLRVKNWLDRLTQSERNIKEQISVLKG  334 (1113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            44566677777777777777666666666666666666666666666554

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=97.03  E-value=0.12  Score=49.48  Aligned_cols=108  Identities=19%  Similarity=0.258  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHH-HHHHH
Q 006565          365 AEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSK-VALLE  443 (640)
Q Consensus       365 aEee~kea~e~~~~areead~aq~E~~elQr~~~qrlaeIerl~~qIE~lEre~e~Le~E~~~l~~sEl~al~k-v~~lE  443 (640)
                      ....++++....+.....+.....+...+|........+-+..++-|+.++.++..+..++.+++ .++..+.+ ...+.
T Consensus         8 v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~-~EL~~l~sEk~~L~   86 (140)
T PF10473_consen    8 VEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLE-LELDTLRSEKENLD   86 (140)
T ss_pred             HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence            33444444444444444444445555555555444444445555555555555555555555555 55555555 55555


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 006565          444 ARVEEREKEIESLLESNNEQRASTVKKLEDL  474 (640)
Q Consensus       444 ~~vee~e~eiE~L~~~~~eq~~~~l~~le~~  474 (640)
                      ..++.-+..+..| ...+.....-|+.++..
T Consensus        87 k~lq~~q~kv~eL-E~~~~~~~~~l~~~E~e  116 (140)
T PF10473_consen   87 KELQKKQEKVSEL-ESLNSSLENLLQEKEQE  116 (140)
T ss_pred             HHHHHHHHHHHHH-HHHhHHHHHHHHHHHHH
Confidence            5555555555555 44444445555555543

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=97.03  E-value=0.12  Score=49.57  Aligned_cols=120  Identities=18%  Similarity=0.170  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          220 WKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKM  299 (640)
Q Consensus       220 wkrky~~L~~QAKkAeek~a~L~er~~~~~q~r~~a~ree~~s~le~kE~kie~~k~ei~~aEq~la~~q~eL~e~e~kI  299 (640)
                      |++++-...++-|+++....+++.++. .++..    .+......+.....-+..+.++......+..+...++.+...+
T Consensus         1 de~K~l~v~~kLK~~~~e~dsle~~v~-~LEre----Le~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL   75 (140)
T PF10473_consen    1 DEEKFLHVEEKLKESESEKDSLEDHVE-SLERE----LEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELEL   75 (140)
T ss_pred             CcHHHHHHHHHHHHHHHhHhhHHHHHH-HHHHH----HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777777778888888888888877775 66666    3333333333333444555555555555555555555555555


Q ss_pred             hhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          300 RSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYL  344 (640)
Q Consensus       300 k~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L  344 (640)
                      ..+..+...+...+.....+...+.+-..++..-+..+.++...+
T Consensus        76 ~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~ek~q~  120 (140)
T PF10473_consen   76 DTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQEKVQL  120 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            555555555555555555555554444445555555555544444

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=97.01  E-value=1.6  Score=53.97  Aligned_cols=30  Identities=17%  Similarity=0.172  Sum_probs=15.0

Q ss_pred             HHHHHHHHHHHhhHHHHHhhHHHHHHHHHH
Q 006565          289 RLELKAAESKMRSYEVEISSQKLETKELSE  318 (640)
Q Consensus       289 q~eL~e~e~kIk~~e~ei~~le~el~~L~e  318 (640)
                      ...+.++.+.|..+++....+..++.-+.+
T Consensus       622 ~e~~~~l~~~i~sL~~~~~~~~~~l~k~~e  651 (1317)
T KOG0612|consen  622 SEIIAELKEEISSLEETLKAGKKELLKVEE  651 (1317)
T ss_pred             HHHHHHHHhHHHHHHHHHHhhhhHHHHHHH
Confidence            344455555555555555555555554444

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=97.01  E-value=0.00097  Score=78.58  Aligned_cols=14  Identities=14%  Similarity=0.273  Sum_probs=4.5

Q ss_pred             HHHHHHHhhhchHH
Q 006565           56 LATFLQQSSEGPIL   69 (640)
Q Consensus        56 ~~~~L~~~l~~~~~   69 (640)
                      +..|.+..|..+|.
T Consensus        79 i~~yy~e~L~~~i~   92 (713)
T PF05622_consen   79 IKSYYQEELGQQIS   92 (713)
T ss_dssp             HHHHHHTTT-----
T ss_pred             HHHHHHHHcCCCcC
Confidence            34455555555553

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=97.00  E-value=1.2  Score=52.15  Aligned_cols=89  Identities=20%  Similarity=0.253  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          265 AEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYL  344 (640)
Q Consensus       265 e~kE~kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L  344 (640)
                      ...+.+++.+..++...++.+..+..++...-..     ...+..-.+|-+...+....+.+|...-.+.+.|..+|+.+
T Consensus       450 k~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~-----~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l  524 (594)
T PF05667_consen  450 KELREEIKEIEEEIRQKEELYKQLVKELEKLPKD-----VNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSL  524 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-----CCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344444444444444444444433222221     23455667777777788888888888888888888888888


Q ss_pred             HHHHHHHHHHHHHH
Q 006565          345 EQKYKSEFERFEEV  358 (640)
Q Consensus       345 ~ekl~se~er~ee~  358 (640)
                      +.++.--+-..++.
T Consensus       525 ~gkL~RtF~v~dEl  538 (594)
T PF05667_consen  525 TGKLDRTFTVTDEL  538 (594)
T ss_pred             HHHHHhHHHHHHHH
Confidence            77776666544443

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=96.97  E-value=1.3  Score=55.24  Aligned_cols=101  Identities=13%  Similarity=0.154  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          407 VQRQIESLERQKTDLTNEVNRIRESELEALSK-VALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAA  485 (640)
Q Consensus       407 l~~qIE~lEre~e~Le~E~~~l~~sEl~al~k-v~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~l~e~  485 (640)
                      +..+++.++.++..|+..+...|..+-+..-. .............-+... -..|.++...+....+.+..+..+..++
T Consensus       213 ~~~~~~~l~~~~~~Lq~~in~kR~~~se~~~~~~~~~~~~~~~~~~~i~~~-~~~N~~Ls~~L~~~t~~~n~l~~~~~~~  291 (1109)
T PRK10929        213 AKKRSQQLDAYLQALRNQLNSQRQREAERALESTELLAEQSGDLPKSIVAQ-FKINRELSQALNQQAQRMDLIASQQRQA  291 (1109)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccCChHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555666666666666666655222222111 111101111111123333 3446666777777777777766666666


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHH
Q 006565          486 NAMAERLSLEVQSAQAKLDEMQQ  508 (640)
Q Consensus       486 nrrleal~~e~~~lqs~id~Leg  508 (640)
                      ...++.....+..++.++..+.|
T Consensus       292 ~~~l~~~~q~~~~i~eQi~~l~~  314 (1109)
T PRK10929        292 ASQTLQVRQALNTLREQSQWLGV  314 (1109)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcc
Confidence            66666666666666666666554

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=96.93  E-value=0.29  Score=50.82  Aligned_cols=20  Identities=10%  Similarity=0.117  Sum_probs=8.8

Q ss_pred             cCcchHHhhhhccCCccCCCCCc
Q 006565          548 MDTNDKVLRANKRSRSTTSPLKY  570 (640)
Q Consensus       548 ~~~~~~~~r~~kr~~~t~~~~~~  570 (640)
                      |-+++-..-.-.+   ..++..|
T Consensus       205 m~l~~~~~~~V~~---~d~iv~C  224 (239)
T COG1579         205 MKLPSQTLSKVRK---KDEIVFC  224 (239)
T ss_pred             eeecHHHHHHHhc---CCCCccC
Confidence            5564443332222   4455555

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=96.93  E-value=0.92  Score=49.87  Aligned_cols=95  Identities=13%  Similarity=0.146  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          264 LAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVY  343 (640)
Q Consensus       264 le~kE~kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~  343 (640)
                      ++.+.+.+..++.+++.++.......-+-+..-+++...-.+.+..+.++..+..++.++...+....++...|..++..
T Consensus        76 lddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~  155 (499)
T COG4372          76 LDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKT  155 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444455555555555555555554444445555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHHHHHH
Q 006565          344 LEQKYKSEFERFEEV  358 (640)
Q Consensus       344 L~ekl~se~er~ee~  358 (640)
                      |..++........++
T Consensus       156 l~~qr~ql~aq~qsl  170 (499)
T COG4372         156 LAEQRRQLEAQAQSL  170 (499)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            544444444443333

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=96.92  E-value=1.3  Score=51.42  Aligned_cols=85  Identities=15%  Similarity=0.250  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 006565          327 AQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIER  406 (640)
Q Consensus       327 ies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~kea~e~~~~areead~aq~E~~elQr~~~qrlaeIer  406 (640)
                      ...+.+++..+......+...+..-..-|-.+..++.+..+.+..+.+........+..++++-..+...+......|..
T Consensus       346 ~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~  425 (560)
T PF06160_consen  346 VRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLRE  425 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555555555555555555555555556666666666666666666666555555555555555555444444444


Q ss_pred             HHHHH
Q 006565          407 VQRQI  411 (640)
Q Consensus       407 l~~qI  411 (640)
                      +.+.+
T Consensus       426 ikR~l  430 (560)
T PF06160_consen  426 IKRRL  430 (560)
T ss_pred             HHHHH
Confidence            44433

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>PRK09039 hypothetical protein; Validated

Probab=96.88  E-value=0.29  Score=53.31  Aligned_cols=13  Identities=15%  Similarity=0.074  Sum_probs=6.9

Q ss_pred             HHHHHHhcCchhh
Q 006565          604 LKQELTKHNFGAE  616 (640)
Q Consensus       604 l~~el~~~~~g~~  616 (640)
                      .+..|..+|+...
T Consensus       296 V~~~Li~~Gi~~~  308 (343)
T PRK09039        296 VVKFLIALGVPAD  308 (343)
T ss_pred             HHHHHHHCCCCHH
Confidence            3455666665443

>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]

Probab=96.87  E-value=2.2  Score=53.40  Aligned_cols=82  Identities=18%  Similarity=0.174  Sum_probs=54.5

Q ss_pred             hhhHHHHHHHHHHhhhhc--ccCCchHH--HHHHHHHHhhhchHHHHHHHHH--hHHHhHHHHHHhhhcCchhHHHHHHH
Q 006565           29 IDNVVKVLDGLISEYETS--CHGPGKWQ--KLATFLQQSSEGPILDLVKRLI--DQIGSERSSLMLKYRSIEDNMKLLKK  102 (640)
Q Consensus        29 ~~~~~~~l~~~l~~y~~s--~~G~g~~~--k~~~~L~~~l~~~~~d~~~~~~--~~i~~~~~~l~~~c~s~~~k~~~~~k  102 (640)
                      |+.|..+|+.+=.+++.+  =.||+.|.  -|.+|+..++.-+=+-+|-+-|  ++-..--++|.....|..+++..+-+
T Consensus       633 ~~~~~~~le~l~~eie~~rk~l~~lq~~s~~Y~k~Ie~~~~~~~CplC~r~f~~eee~ef~~~l~~~i~s~p~~~~~~~~  712 (1294)
T KOG0962|consen  633 IDEYLDLLERLKGEIEKARKDLAMLQGRSALYRKFIEIACRSHCCPLCQRSFTTEEEVEFIKKLESKIDSAPDKLEEAEV  712 (1294)
T ss_pred             hhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCCCccCCccchHHHHHHHHHHHHHHhccchhHHHHHH
Confidence            445555555555555543  35677777  9999999998766666666655  23344445566666777788888888


Q ss_pred             HHHhhHHh
Q 006565          103 QLEDSERY  110 (640)
Q Consensus       103 ~le~~~k~  110 (640)
                      .|....+.
T Consensus       713 ~l~k~~k~  720 (1294)
T KOG0962|consen  713 ELSKEEKI  720 (1294)
T ss_pred             HHHHHHHH
Confidence            87777766

>PRK09039 hypothetical protein; Validated

Probab=96.87  E-value=0.32  Score=53.02  Aligned_cols=9  Identities=33%  Similarity=0.501  Sum_probs=5.8

Q ss_pred             HHhcCchhh
Q 006565          608 LTKHNFGAE  616 (640)
Q Consensus       608 l~~~~~g~~  616 (640)
                      |+-.|||..
T Consensus       310 i~~~G~G~~  318 (343)
T PRK09039        310 LAAAGFGEF  318 (343)
T ss_pred             eEEEEeCCc
Confidence            455677765

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=96.80  E-value=0.71  Score=48.02  Aligned_cols=9  Identities=33%  Similarity=0.449  Sum_probs=3.6

Q ss_pred             HHHHHHHHH
Q 006565          496 VQSAQAKLD  504 (640)
Q Consensus       496 ~~~lqs~id  504 (640)
                      ...+.+.++
T Consensus       165 ~~~L~~~l~  173 (239)
T COG1579         165 REELKEKLD  173 (239)
T ss_pred             HHHHHHhcC
Confidence            334444443

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=96.80  E-value=1.8  Score=51.41  Aligned_cols=71  Identities=13%  Similarity=0.095  Sum_probs=58.2

Q ss_pred             HHHHhHhhHhhHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          172 DQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQ  242 (640)
Q Consensus       172 e~~~~~~k~~~~~~AAGIsklK~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAeek~a~L~  242 (640)
                      |..+.+--.-+..|...|..++.-.+.+..-++.+....+|..-+..+.+.....++.|.+.-.+.+..++
T Consensus        19 e~Ll~esa~~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K   89 (717)
T PF09730_consen   19 ESLLQESASKEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYK   89 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566666677788889999999999999999999999999999999999999999988887775444433

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=96.79  E-value=0.7  Score=49.64  Aligned_cols=189  Identities=19%  Similarity=0.240  Sum_probs=125.4

Q ss_pred             HHhhhH-HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH-----------------------
Q 006565          184 QVCSEI-EVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYG----VAVREAKAAL-----------------------  235 (640)
Q Consensus       184 ~~AAGI-sklK~Rkkeae~RL~at~enL~RVkDel~Ewkrky~----~L~~QAKkAe-----------------------  235 (640)
                      .+||.| -.+-.+-..+..+...+.++|..+.+.+...+..+.    -|..-....+                       
T Consensus        79 elaA~iGqsLl~~N~~L~~~~~~le~~L~~~~e~v~qLrHeL~~kdeLL~~ys~~~ee~~~~~~~~~~~~~~~~~~~~~~  158 (306)
T PF04849_consen   79 ELAARIGQSLLEQNQDLSERNEALEEQLGAALEQVEQLRHELSMKDELLQIYSNDDEESEPESSESTPLRRNESSLSSQK  158 (306)
T ss_pred             HHHHHHhHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccccCCCcccccccccccccc
Confidence            467888 445566666777888888888777777766655432    2221111111                       


Q ss_pred             -HHHHHHHHhhhHHHhhhHHHHHHHHhH---HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHh
Q 006565          236 -EKAAIVQERTSKEMQQREDVLREEFSS---TLAEKEEEMKE----KATKIEHAEQCLTTLRLELKAAESKMRSYEVEIS  307 (640)
Q Consensus       236 -ek~a~L~er~~~~~q~r~~a~ree~~s---~le~kE~kie~----~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~  307 (640)
                       -.+..|+.++ +.++..-..||.++..   +....|.+...    -..++..+-.+++.++.+|.........+..+|.
T Consensus       159 ~~~le~Lq~Kl-k~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt  237 (306)
T PF04849_consen  159 CIQLEALQEKL-KSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEIT  237 (306)
T ss_pred             chhHHHHHHHH-HHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence             2234466666 3555554444444332   22233323222    3456777777888888888888888888888888


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          308 SQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKAT  373 (640)
Q Consensus       308 ~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~kea~  373 (640)
                      .+-.++-.|..+......+-+.+...+...+..=..|...+.....+|.+...-|.+++++++..+
T Consensus       238 ~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~lR  303 (306)
T PF04849_consen  238 SLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKTLR  303 (306)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            888888888888888888888888888888877778888888888888888888887777766554

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=96.75  E-value=1.8  Score=50.78  Aligned_cols=31  Identities=32%  Similarity=0.261  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 006565          476 ESERRSRAAANAMAERLSLEVQSAQAKLDEM  506 (640)
Q Consensus       476 e~~re~l~e~nrrleal~~e~~~lqs~id~L  506 (640)
                      +..+..|.+....+++++-+-+-++..|..+
T Consensus       282 E~~~~ELq~~qe~Lea~~qqNqqL~~qls~~  312 (617)
T PF15070_consen  282 EMAHQELQEAQEHLEALSQQNQQLQAQLSLM  312 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhh
Confidence            4455666666777777777777777777764

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=96.72  E-value=0.78  Score=46.13  Aligned_cols=63  Identities=21%  Similarity=0.321  Sum_probs=29.6

Q ss_pred             HHHHHHHHHhHHHHhhhcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 006565          412 ESLERQKTDLTNEVNRIRESELEALSK-VALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLE  476 (640)
Q Consensus       412 E~lEre~e~Le~E~~~l~~sEl~al~k-v~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le  476 (640)
                      +.+.++...|......|. ..+-.++. +..-++.+.++...++.| ..-+++.....+.|..++.
T Consensus       119 ~~lk~~~~eL~~~~~~Lq-~Ql~~~e~l~~~~da~l~e~t~~i~eL-~~~ieEy~~~teeLR~e~s  182 (193)
T PF14662_consen  119 DGLKKRSKELATEKATLQ-RQLCEFESLICQRDAILSERTQQIEEL-KKTIEEYRSITEELRLEKS  182 (193)
T ss_pred             hhHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444 44444555 555555555555555555 4444444444444444333

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.71  E-value=2.1  Score=50.93  Aligned_cols=100  Identities=15%  Similarity=0.127  Sum_probs=53.7

Q ss_pred             HhHHH--HHhhHHHHHHHHhHHhhhcchHHhHHhhHHhHHhhhhhhHHHHHHHHHHHhHhhHhhHHHhhhHHHHhhhhHH
Q 006565          121 AINDK--KKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTA  198 (640)
Q Consensus       121 ~i~d~--kk~~~~~~~~~~~l~~k~~s~ee~~~~l~k~le~~~~e~~ew~~kYe~~~~~~k~~~~~~AAGIsklK~Rkke  198 (640)
                      -+.|+  +++.......++.+-..-.-.|+.-....|.++..-.                         .+.+||.=..+
T Consensus       614 ~~lD~~f~kL~kele~~i~k~ls~~~eee~~~~~~~k~~e~l~~-------------------------~~~kyK~lI~~  668 (970)
T KOG0946|consen  614 LALDFEFKKLFKELEGLIAKLLSSKTEEEEQTQLAEKYHEELDD-------------------------IQQKYKGLIRE  668 (970)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHHHHHHH-------------------------HHHHHHHHHHH
Confidence            34555  7788888888877766655555544433333332221                         12334444445


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006565          199 AEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERT  245 (640)
Q Consensus       199 ae~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAeek~a~L~er~  245 (640)
                      .....++++++..+.+-+..+.+.+|.....+.-+-.+++.-|+.+.
T Consensus       669 lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qL  715 (970)
T KOG0946|consen  669 LDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQL  715 (970)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            55555555555555555555555555555555555555555444444

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=96.68  E-value=1.8  Score=49.74  Aligned_cols=192  Identities=18%  Similarity=0.209  Sum_probs=107.7

Q ss_pred             cCCCCcchh-hHHHHHHHH-------HHhhhhcccCCchHHHHHHHHHHhhhchHHHHHHHHHhHHHhHHHHHHhhhcCc
Q 006565           22 CHSSDASID-NVVKVLDGL-------ISEYETSCHGPGKWQKLATFLQQSSEGPILDLVKRLIDQIGSERSSLMLKYRSI   93 (640)
Q Consensus        22 c~~~~a~~~-~~~~~l~~~-------l~~y~~s~~G~g~~~k~~~~L~~~l~~~~~d~~~~~~~~i~~~~~~l~~~c~s~   93 (640)
                      |-.| ++|+ .|+.+|-.+       ++ |-.++.||-.|.++-+.|+=-+         .+|+.=.++-...-+--.-+
T Consensus       120 y~f~-~r~EeEV~~ilK~L~YPf~~siS-s~~a~gspH~WP~iL~mlhWlv---------dlI~~~t~~v~~~~l~q~~~  188 (581)
T KOG0995|consen  120 YEFP-ERIEEEVVQILKNLKYPFLLSIS-SLQAAGSPHNWPHILGMLHWLV---------DLIRINTALVEDSPLEQEEA  188 (581)
T ss_pred             cccc-hhHHHHHHHHHHhCCCCcccchh-hhccCCCCCccHHHHHHHHHHH---------HHHHHhHHHhhccchhccch
Confidence            3344 5554 577777653       45 7788999999998888776443         33322222222222211222


Q ss_pred             hhHHHHHHHHH-HhhH-HhHHHHHH--HhhHHhHHH----HHhhHHHHHHHHhHHhhhcchHHhHHhhHHhHHhhhhhhH
Q 006565           94 EDNMKLLKKQL-EDSE-RYKSEYLK--RYDDAINDK----KKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEIS  165 (640)
Q Consensus        94 ~~k~~~~~k~l-e~~~-k~~~~~~k--~~e~~i~d~----kk~~~~~~~~~~~l~~k~~s~ee~~~~l~k~le~~~~e~~  165 (640)
                      +++.-+  |.+ |-.- .+..|+.-  .|..+-.++    .+.-..+..++.+|....+.|++.+....+ . ..+.+. 
T Consensus       189 ed~~m~--k~f~dy~~~~Y~~fl~g~d~~~~~~~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~e~ek-~-~~~~es-  263 (581)
T KOG0995|consen  189 EDKTMN--KLFFDYTIRSYTSFLKGEDNSSELEDELKHRLEKYFTSIANEIEDLKKTNRELEEMINEREK-D-PGKEES-  263 (581)
T ss_pred             HHHHHH--HHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C-cchHHH-
Confidence            222222  222 1111 11111110  022333333    344445667888999999999998883322 1 111111 


Q ss_pred             HHHHHHHHHHhHhhHhhHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          166 DWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAA  234 (640)
Q Consensus       166 ew~~kYe~~~~~~k~~~~~~AAGIsklK~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkA  234 (640)
                       -+++|...=+    +...|-+=++-|+.++-.-+..|......+..+..++.=++.+-+.|.+|...-
T Consensus       264 -lre~~~~L~~----D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q  327 (581)
T KOG0995|consen  264 -LREKKARLQD----DVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQ  327 (581)
T ss_pred             -HHHHHHHHHh----HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence             2233332222    222345566677789999999999999999999999999988888888866543

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.66  E-value=2.3  Score=50.68  Aligned_cols=100  Identities=14%  Similarity=0.142  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          274 KATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFE  353 (640)
Q Consensus       274 ~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~e  353 (640)
                      ...+...+++++..++.+++.....|+.+..++..++.+...-+.-..-...+-.++..++...+++.+++.-.++...+
T Consensus       846 la~e~~~ieq~ls~l~~~~k~~~nli~~ltEk~~sl~~qadse~l~ka~~~~k~~nl~lki~s~kqeqee~~v~~~~~~~  925 (970)
T KOG0946|consen  846 LANELKLIEQKLSNLQEKIKFGNNLIKELTEKISSLEAQADSETLSKALKTVKSENLSLKIVSNKQEQEELLVLLADQKE  925 (970)
T ss_pred             hhhHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHhhcchHHHHHHHHhhcccchhcccchhhhHHHHHHHHhhHHH
Confidence            34444455555555555555555555555555555544444333333333444455555666666666666555556566


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 006565          354 RFEEVQERCKVAEKEAKKAT  373 (640)
Q Consensus       354 r~ee~~~rleeaEee~kea~  373 (640)
                      ++..+.+.+..++..+.+..
T Consensus       926 ~i~alk~~l~dL~q~~eeie  945 (970)
T KOG0946|consen  926 KIQALKEALEDLNQPVEEIE  945 (970)
T ss_pred             HHHHHHHHHHHhCCChhhHH
Confidence            66666666665555544433

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=96.61  E-value=2.4  Score=50.20  Aligned_cols=136  Identities=20%  Similarity=0.314  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHH-HHHHHHHHHHHHHH
Q 006565          374 ELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSK-VALLEARVEEREKE  452 (640)
Q Consensus       374 e~~~~areead~aq~E~~elQr~~~qrlaeIerl~~qIE~lEre~e~Le~E~~~l~~sEl~al~k-v~~lE~~vee~e~e  452 (640)
                      .....+......++.+...+...+.+..+...-+...|..++-+...|+.....+. .|+-.+.- +..+...+.+....
T Consensus       489 ~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~-~el~~~~~~le~~kk~~~e~~~~  567 (698)
T KOG0978|consen  489 SERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLI-KELTTLTQSLEMLKKKAQEAKQS  567 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444455555555555555555555555555555555555555555555 44444433 44444444444444


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhcccc
Q 006565          453 IESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQELTKARLNET  518 (640)
Q Consensus       453 iE~L~~~~~eq~~~~l~~le~~le~~re~l~e~nrrleal~~e~~~lqs~id~Leg~~~~~~~~et  518 (640)
                      .+.|        +..+...+..++.+...+++....++..+....-++..+.-+.+-+.-++..+.
T Consensus       568 ~~~L--------q~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~~~  625 (698)
T KOG0978|consen  568 LEDL--------QIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKKEES  625 (698)
T ss_pred             HHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            4444        444444444444455555555555555555555555555555555544444444

>PRK11281 hypothetical protein; Provisional

Probab=96.52  E-value=3.7  Score=51.36  Aligned_cols=118  Identities=14%  Similarity=0.117  Sum_probs=79.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHH-----------HHHHHHhHHHH
Q 006565          197 TAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQRED-----------VLREEFSSTLA  265 (640)
Q Consensus       197 keae~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAeek~a~L~er~~~~~q~r~~-----------a~ree~~s~le  265 (640)
                      .+++.+|..+..+|..++..+.++..++-.+..+-.+|+........++. +...++.           +.+..+.++..
T Consensus       124 ~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~Rlq-eI~~~L~~~~~~~~~l~~~~~~~l~ae~~  202 (1113)
T PRK11281        124 RQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQ-QIRNLLKGGKVGGKALRPSQRVLLQAEQA  202 (1113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH-HHHHHHhCCCCCCCcCCHHHHHHHHHHHH
Confidence            56888889999999999999999999999999999998877777666664 5555542           22455555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHH
Q 006565          266 EKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKE  315 (640)
Q Consensus       266 ~kE~kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~  315 (640)
                      -++.++.-...++........-.+........++...+..+..+++.+..
T Consensus       203 ~l~~~~~~~~~~l~~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in~  252 (1113)
T PRK11281        203 LLNAQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAINS  252 (1113)
T ss_pred             HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555544444444555555555566666666665555544

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=96.52  E-value=0.75  Score=54.74  Aligned_cols=36  Identities=14%  Similarity=0.119  Sum_probs=30.8

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          257 REEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLEL  292 (640)
Q Consensus       257 ree~~s~le~kE~kie~~k~ei~~aEq~la~~q~eL  292 (640)
                      .+....+.+|++..+..++.++..+|.++...+..-
T Consensus       189 ~~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~  224 (754)
T TIGR01005       189 SESNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQS  224 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            667778899999999999999999999998887653

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.50  E-value=2.8  Score=49.76  Aligned_cols=74  Identities=11%  Similarity=0.104  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 006565          327 AQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMER  400 (640)
Q Consensus       327 ies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~kea~e~~~~areead~aq~E~~elQr~~~qr  400 (640)
                      +--+......|..++.-|..++..+.+++.-+.-++-.+..++...+..++....+++..+.+..++|.....+
T Consensus       432 iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l  505 (1118)
T KOG1029|consen  432 IVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKL  505 (1118)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            33333344444444444444444455555555566666777777788888888888888888888877666443

>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]

Probab=96.47  E-value=4  Score=51.21  Aligned_cols=189  Identities=17%  Similarity=0.141  Sum_probs=99.6

Q ss_pred             hHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHhhhhcccC-CchHHHHHHHHHHhhhchHHHHHHHHHhHHHhHHHHH
Q 006565            8 SSAIQSMERKLRAACHSSDASIDNVVKVLDGLISEYETSCHG-PGKWQKLATFLQQSSEGPILDLVKRLIDQIGSERSSL   86 (640)
Q Consensus         8 ~~~~~~me~~l~~ac~~~~a~~~~~~~~l~~~l~~y~~s~~G-~g~~~k~~~~L~~~l~~~~~d~~~~~~~~i~~~~~~l   86 (640)
                      ++-|+.|+++++++        ...+.++.-...-|+.++.- ...-.+...|.-.++-|.|.+|-    +.+.+.+   
T Consensus       580 ~~~~~~~~ek~~~l--------~~~~~~~e~~~~~~~~~~e~~~~e~~k~~~~~lk~~sgt~~~~~----~~le~l~---  644 (1294)
T KOG0962|consen  580 SKEIQEMEERLRML--------QLEEQSLEINRNGIRKDLEDRKEEELKSKEFFLKDESGTIDEYL----DLLERLK---  644 (1294)
T ss_pred             HHHHHHHHHHHHHH--------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhccchhhHH----HHHHHHH---
Confidence            57789999999874        56788888888888888874 22222444444444445554442    2222222   


Q ss_pred             HhhhcCchhHHHHHHHHHHhhHHhHHHHHHHhhHHhHHH-H------HhhHHHHHHHHhHHhhhcchHHhHHhhHHhHHh
Q 006565           87 MLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDK-K------KLADDYTSRINNLQGENISLREKSSSLSKTVDS  159 (640)
Q Consensus        87 ~~~c~s~~~k~~~~~k~le~~~k~~~~~~k~~e~~i~d~-k------k~~~~~~~~~~~l~~k~~s~ee~~~~l~k~le~  159 (640)
                              ..++.-.+.|-.+..-..||.+-.+-+..+. +      .-.+....-+..|..+..|.=+....+.+.|..
T Consensus       645 --------~eie~~rk~l~~lq~~s~~Y~k~Ie~~~~~~~CplC~r~f~~eee~ef~~~l~~~i~s~p~~~~~~~~~l~k  716 (1294)
T KOG0962|consen  645 --------GEIEKARKDLAMLQGRSALYRKFIEIACRSHCCPLCQRSFTTEEEVEFIKKLESKIDSAPDKLEEAEVELSK  716 (1294)
T ss_pred             --------HHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCCCccCCccchHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Confidence                    2555566677777777788888777655544 2      222333333333444443333333333333322


Q ss_pred             hhhhhHHHHHHHHHHHhHhhHhhHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          160 LKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVRE  230 (640)
Q Consensus       160 ~~~e~~ew~~kYe~~~~~~k~~~~~~AAGIsklK~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L~~Q  230 (640)
                      ..       +.|+..+- .+..   +..-|-....+-.++...|.-+..++....-...+...-++++...
T Consensus       717 ~~-------k~~e~l~~-~~~~---~~~~~~l~~~~i~e~~~~l~~~~~el~~~~~~~e~~~~~l~~~~~~  776 (1294)
T KOG0962|consen  717 EE-------KIFEILLK-LKPT---FGSIIKLIDKEIPELEKELQEVYEELGDLSEEEEDDEKLLDTIDAA  776 (1294)
T ss_pred             HH-------HHHHHHHh-hhhH---HHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHhcccchh
Confidence            22       22333222 2211   1112222334556666666666666666666666666666555443

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=96.47  E-value=0.42  Score=53.85  Aligned_cols=34  Identities=26%  Similarity=0.336  Sum_probs=26.6

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          257 REEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRL  290 (640)
Q Consensus       257 ree~~s~le~kE~kie~~k~ei~~aEq~la~~q~  290 (640)
                      +.......+|++.++..++.++..++..+...+.
T Consensus       156 ~~~~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~  189 (498)
T TIGR03007       156 RQDSDSAQRFIDEQIKTYEKKLEAAENRLKAFKQ  189 (498)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5556667888888888888888888888887754

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>PF13514 AAA_27: AAA domain

Probab=96.43  E-value=4.1  Score=50.90  Aligned_cols=134  Identities=19%  Similarity=0.351  Sum_probs=73.6

Q ss_pred             HHHHHhHHHhHHHHHHhhhcCchhHHHHHHHHHHhhH----------------HhHHHHHH---------HhhHHhHHHH
Q 006565           72 VKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSE----------------RYKSEYLK---------RYDDAINDKK  126 (640)
Q Consensus        72 ~~~~~~~i~~~~~~l~~~c~s~~~k~~~~~k~le~~~----------------k~~~~~~k---------~~e~~i~d~k  126 (640)
                      .+..+..+......++-.|.....-+..+.-+++.+.                .=-.-|+-         .||.+|..--
T Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~t~~~l~~aR~~Rd~~W~~~~~~~~~~~~fe~a~~~aD  536 (1111)
T PF13514_consen  457 FRAEFEELERQLRRARDRLEELEEELARLEARLRRLAAAGDVPTEEELAAARARRDAAWQLAALDAALAEAFEAAVREAD  536 (1111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCCccccHHHHHHHHHHHH
Confidence            3445577777777777777777777777766666665                11112333         4666665544


Q ss_pred             HhhHH------HHHHHHhHHhhhcchHHhHHhhHHhHHhhhh-----------------------hhHHHHHHHHHHHhH
Q 006565          127 KLADD------YTSRINNLQGENISLREKSSSLSKTVDSLKN-----------------------EISDWKRKYDQVLTK  177 (640)
Q Consensus       127 k~~~~------~~~~~~~l~~k~~s~ee~~~~l~k~le~~~~-----------------------e~~ew~~kYe~~~~~  177 (640)
                      .++|.      -.+++..++.....+.-++..+...++.+..                       +..+|..+++.++..
T Consensus       537 ~laD~~~~~a~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~g~p~~p~~~~~Wl~~~~~~~~~  616 (1111)
T PF13514_consen  537 ELADRRLREAERAARLAQLRARLEEARARLARAQARLAAAEAALAALEAAWAALWAAAGLPLSPAEMRDWLARREAALEA  616 (1111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Confidence            44443      2344555555554444444444444444333                       345688888887775


Q ss_pred             hhHhhHHHhhhHHHHhhhhHHHHHHHHHH
Q 006565          178 QKAMEDQVCSEIEVLKSRSTAAEARLAAA  206 (640)
Q Consensus       178 ~k~~~~~~AAGIsklK~Rkkeae~RL~at  206 (640)
                      ...... ..+.+..+..+...+...|...
T Consensus       617 ~~~~~~-~~~~~~~~~~~~~~~~~~L~~~  644 (1111)
T PF13514_consen  617 AEELRA-ARAELEALRARRAAARAALAAA  644 (1111)
T ss_pred             HHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence            543333 4455555555555555555544

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=96.39  E-value=4.9  Score=51.38  Aligned_cols=13  Identities=8%  Similarity=0.041  Sum_probs=4.9

Q ss_pred             HHHHHHHHHHhhH
Q 006565           96 NMKLLKKQLEDSE  108 (640)
Q Consensus        96 k~~~~~k~le~~~  108 (640)
                      +++.+.+-++++.
T Consensus       238 ~le~l~~~~~~l~  250 (1353)
T TIGR02680       238 ELERLEALERALR  250 (1353)
T ss_pred             HHHHHHHHHHHHH
Confidence            3333333333333

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=96.37  E-value=2.2  Score=47.07  Aligned_cols=120  Identities=16%  Similarity=0.172  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 006565          200 EARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIE  279 (640)
Q Consensus       200 e~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAeek~a~L~er~~~~~q~r~~a~ree~~s~le~kE~kie~~k~ei~  279 (640)
                      ++=|=-...+|-+-==.+.++..+++.+..+.+.|.......+..-+                   .-..+++....+-.
T Consensus        59 Lailf~~~~~lr~gVfqlddi~~qlr~~rtel~~a~~~k~~~e~er~-------------------~~~~El~~~r~e~~  119 (499)
T COG4372          59 LAILFLLNRNLRSGVFQLDDIRPQLRALRTELGTAQGEKRAAETERE-------------------AARSELQKARQERE  119 (499)
T ss_pred             HHHHHHhhhhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHH
Confidence            33333444444444444555555555555555555443333332211                   11122333333333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          280 HAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIME  338 (640)
Q Consensus       280 ~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~  338 (640)
                      ..++++...+..+..+...+......-..+..++..|...+..+..+.+++-..-+.|.
T Consensus       120 ~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ  178 (499)
T COG4372         120 AVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQ  178 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444344444444444444455555555555544444444433333

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=96.35  E-value=3.6  Score=49.45  Aligned_cols=9  Identities=33%  Similarity=0.338  Sum_probs=6.0

Q ss_pred             HhHHHHHHH
Q 006565          109 RYKSEYLKR  117 (640)
Q Consensus       109 k~~~~~~k~  117 (640)
                      +++.||-.|
T Consensus       234 rLk~FY~~~  242 (980)
T KOG0980|consen  234 RLKQFYADC  242 (980)
T ss_pred             HHHHHHHhc
Confidence            666777665

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=96.34  E-value=0.2  Score=56.42  Aligned_cols=75  Identities=16%  Similarity=0.221  Sum_probs=48.4

Q ss_pred             hhhcchHHhHHhhHHhHHhhhhhhHHHHHHHHHHHhHhhHhhHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          141 GENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEW  220 (640)
Q Consensus       141 ~k~~s~ee~~~~l~k~le~~~~e~~ew~~kYe~~~~~~k~~~~~~AAGIsklK~Rkkeae~RL~at~enL~RVkDel~Ew  220 (640)
                      .-..-++.+...+..+|+.++....+|+.++.-.+.+..                 .....++.....++..++..+.+.
T Consensus       161 ~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~~~-----------------~~~~~~l~~l~~~l~~~~~~l~~~  223 (498)
T TIGR03007       161 SAQRFIDEQIKTYEKKLEAAENRLKAFKQENGGILPDQE-----------------GDYYSEISEAQEELEAARLELNEA  223 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCccch-----------------hhHHHHHHHHHHHHHHHHHHHHHH
Confidence            345567888888889999999999999888754333211                 122345566666666666666666


Q ss_pred             HHHHHHHHHHHH
Q 006565          221 KRKYGVAVREAK  232 (640)
Q Consensus       221 krky~~L~~QAK  232 (640)
                      +..++.+..+..
T Consensus       224 ~a~~~~l~~~l~  235 (498)
T TIGR03007       224 IAQRDALKRQLG  235 (498)
T ss_pred             HHHHHHHHHHhc
Confidence            666666665433

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=96.31  E-value=0.74  Score=43.36  Aligned_cols=51  Identities=20%  Similarity=0.186  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 006565          340 DKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGK  390 (640)
Q Consensus       340 ei~~L~ekl~se~er~ee~~~rleeaEee~kea~e~~~~areead~aq~E~  390 (640)
                      .-...+.+|+.+...=.+....+..+..++......+..++..++.++...
T Consensus        39 ~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l   89 (132)
T PF07926_consen   39 IAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAEL   89 (132)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333444444444444444444443333

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=96.26  E-value=1.4  Score=47.81  Aligned_cols=15  Identities=7%  Similarity=0.149  Sum_probs=5.6

Q ss_pred             HHHHHHHHHHHHHHH
Q 006565          360 ERCKVAEKEAKKATE  374 (640)
Q Consensus       360 ~rleeaEee~kea~e  374 (640)
                      ..+..++.....+..
T Consensus       165 ~~l~~~~~~l~~~~~  179 (423)
T TIGR01843       165 AQLQALRQQLEVISE  179 (423)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333333333333333

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=96.19  E-value=4.4  Score=48.76  Aligned_cols=47  Identities=13%  Similarity=0.128  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Q 006565          464 RASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQEL  510 (640)
Q Consensus       464 ~~~~l~~le~~le~~re~l~e~nrrleal~~e~~~lqs~id~Leg~~  510 (640)
                      +-.++..++.+...+++.|+..|..+..-++-+--+=+++..+|+++
T Consensus       263 l~~~l~~~eeEnk~Lke~l~~k~~ELq~sr~~~a~ta~kL~~~e~ql  309 (769)
T PF05911_consen  263 LTERLQAMEEENKMLKEALAKKNSELQFSRNMYAKTASKLSQLEAQL  309 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            37888889999999999999999999999999999999999998888

The function of this family is unknown.

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=96.14  E-value=1.8  Score=43.78  Aligned_cols=29  Identities=17%  Similarity=0.235  Sum_probs=12.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          392 EFENLAMERMAVIERVQRQIESLERQKTD  420 (640)
Q Consensus       392 elQr~~~qrlaeIerl~~qIE~lEre~e~  420 (640)
                      ++++......+.+...+..|..|++.++-
T Consensus       122 eL~~kL~~~~~~l~~~~~ki~~Lek~leL  150 (194)
T PF15619_consen  122 ELQRKLSQLEQKLQEKEKKIQELEKQLEL  150 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444333

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=96.14  E-value=1.9  Score=44.07  Aligned_cols=89  Identities=16%  Similarity=0.249  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          289 RLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKE  368 (640)
Q Consensus       289 q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee  368 (640)
                      ..++..+...-.....++..++.....|..+++..+.-+..|..-=..|+..+..+..++....++|..+...   +++.
T Consensus        68 ~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~h---Aeek  144 (207)
T PF05010_consen   68 EAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAH---AEEK  144 (207)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence            3444444455555667777777777799999999999999999998999999999988888888888776643   3345


Q ss_pred             HHHHHHHHHHHH
Q 006565          369 AKKATELADRER  380 (640)
Q Consensus       369 ~kea~e~~~~ar  380 (640)
                      +..|.++++..+
T Consensus       145 L~~ANeei~~v~  156 (207)
T PF05010_consen  145 LEKANEEIAQVR  156 (207)
T ss_pred             HHHHHHHHHHHH
Confidence            555555555443

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=96.12  E-value=2.6  Score=45.46  Aligned_cols=247  Identities=14%  Similarity=0.166  Sum_probs=112.3

Q ss_pred             HHHhhhcCchhHHHHHHHHHHhhHHhH-------HHHHHHhhHHhHHHHHhhHHHHHHHHhHHhhhcchHHhHHhhHHhH
Q 006565           85 SLMLKYRSIEDNMKLLKKQLEDSERYK-------SEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTV  157 (640)
Q Consensus        85 ~l~~~c~s~~~k~~~~~k~le~~~k~~-------~~~~k~~e~~i~d~kk~~~~~~~~~~~l~~k~~s~ee~~~~l~k~l  157 (640)
                      .....+.+|++|++.|.+..-.++...       ..+++++.....+    .+...++++-...-.+.||.=|--|-++=
T Consensus        12 q~l~~l~~~eeK~~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~ke----k~~l~~E~~k~~~~k~KLE~LCRELQk~N   87 (309)
T PF09728_consen   12 QSLNKLSSPEEKLEALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKE----KDQLQSELSKAILAKSKLESLCRELQKQN   87 (309)
T ss_pred             HHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344678899999999988887776322       2333333333333    33334444433333333333333333332


Q ss_pred             Hh-----------hhhhhHHHHHHHHHHHhHhhHhhHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          158 DS-----------LKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGV  226 (640)
Q Consensus       158 e~-----------~~~e~~ew~~kYe~~~~~~k~~~~~~AAGIsklK~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~  226 (640)
                      -.           -+....+|..+|..+|++-..--+.....-.++                     .++=.+.+.+++.
T Consensus        88 k~lkeE~~~~~~eee~kR~el~~kFq~~L~dIq~~~ee~~~~~~k~---------------------~~eN~~L~eKlK~  146 (309)
T PF09728_consen   88 KKLKEESKRRAREEEEKRKELSEKFQATLKDIQAQMEEQSERNIKL---------------------REENEELREKLKS  146 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHH---------------------HHHHHHHHHHHHH
Confidence            22           224455677777777775544433333322222                     2333344445555


Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 006565          227 AVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTL-AEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVE  305 (640)
Q Consensus       227 L~~QAKkAeek~a~L~er~~~~~q~r~~a~ree~~s~l-e~kE~kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~e  305 (640)
                      +..|-..-+..+..+-...  .++.++..++-+-.... ..-.........-+..--..+..+...-.++...+..|..+
T Consensus       147 l~eQye~rE~~~~~~~k~k--eLE~Ql~~AKl~q~~~~~~~e~~k~~~~~~~~l~~~~~~~~~~~~E~~Lr~QL~~Y~~K  224 (309)
T PF09728_consen  147 LIEQYELREEHFEKLLKQK--ELEVQLAEAKLEQQQEEAEQEKEKAKQEKEILLEEAAQVQTLKETEKELREQLNLYSEK  224 (309)
T ss_pred             HHHHHHHHHHHHHHHhhHH--HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555444444444432221  22222211111111110 00000111111100000004444444445555555555566


Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          306 ISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEV  358 (640)
Q Consensus       306 i~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~  358 (640)
                      ....+.-|.-.++-+.+...+++...+.+..|+.+...+..+++.....+...
T Consensus       225 f~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m  277 (309)
T PF09728_consen  225 FEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEM  277 (309)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            66666666666666666666666666666666666555544444444433333

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=96.09  E-value=2.6  Score=45.33  Aligned_cols=24  Identities=13%  Similarity=0.148  Sum_probs=14.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          203 LAAAREQALSAQEEVEEWKRKYGV  226 (640)
Q Consensus       203 L~at~enL~RVkDel~Ewkrky~~  226 (640)
                      ...|-.|.+.|..++.|-+|-+..
T Consensus        57 mtkty~Didavt~lLeEkerDLel   80 (306)
T PF04849_consen   57 MTKTYNDIDAVTRLLEEKERDLEL   80 (306)
T ss_pred             hhcchhhHHHHHHHHHHHhhhHHH
Confidence            344666777777777775554433

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]

Probab=96.09  E-value=4.3  Score=47.77  Aligned_cols=113  Identities=12%  Similarity=0.204  Sum_probs=81.7

Q ss_pred             hHHHhHHHHHHhhhcCchhHHHHHHHHHHhhHHhHHHHHHHhhHHhHHHHHhhHHHHHHHHhHHhhhcchHHhHHhhHHh
Q 006565           77 DQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKT  156 (640)
Q Consensus        77 ~~i~~~~~~l~~~c~s~~~k~~~~~k~le~~~k~~~~~~k~~e~~i~d~kk~~~~~~~~~~~l~~k~~s~ee~~~~l~k~  156 (640)
                      .-+-..+.++.-+|..+-.++..+.-+..+..+-...+..-.+..+..+.-+...|.+.++.++-+|--.+++...+|.-
T Consensus       108 ~~l~~~q~a~~~~e~~lq~q~e~~~n~~q~~~~k~~el~~e~~~k~ae~~~lr~k~dss~s~~q~e~~~~~~~~~~~~s~  187 (716)
T KOG4593|consen  108 TRLRQLQEALKGQEEKLQEQLERNRNQCQANLKKELELLREKEDKLAELGTLRNKLDSSLSELQWEVMLQEMRAKRLHSE  187 (716)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455556777777777777777777777777777777777888888888889999999999999988888888777765


Q ss_pred             HHhhhhhhHHHHHHHHHHHhHhhHhhHHHhhhHHHHhhhh
Q 006565          157 VDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRS  196 (640)
Q Consensus       157 le~~~~e~~ew~~kYe~~~~~~k~~~~~~AAGIsklK~Rk  196 (640)
                      |.       .+.+.|...+-+-+...-..++.+..+..+.
T Consensus       188 l~-------~~eke~~~~~~ql~~~~q~~~~~~~~l~e~~  220 (716)
T KOG4593|consen  188 LQ-------NEEKELDRQHKQLQEENQKIQELQASLEERA  220 (716)
T ss_pred             HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            54       5556666666666666666666666665553

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=96.06  E-value=6.2  Score=49.35  Aligned_cols=57  Identities=16%  Similarity=0.242  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q 006565          399 ERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSK--VALLEARVEEREKEIESL  456 (640)
Q Consensus       399 qrlaeIerl~~qIE~lEre~e~Le~E~~~l~~sEl~al~k--v~~lE~~vee~e~eiE~L  456 (640)
                      +...+|..++-..-.++++.+.+.. +..+....-..+..  ...+..-++.+++-++.|
T Consensus       337 ~l~~~IAdlRl~~f~~~q~~~~l~~-i~~~~~~~~~~~t~~~~~~l~~ll~~rr~LL~~L  395 (1109)
T PRK10929        337 QLDTEMAQLRVQRLRYEDLLNKQPQ-LRQIRQADGQPLTAEQNRILDAQLRTQRELLNSL  395 (1109)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhh-hHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            3456677777777777777777653 44333111112222  445566666777777777

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure

Probab=96.01  E-value=4.1  Score=46.77  Aligned_cols=172  Identities=16%  Similarity=0.193  Sum_probs=108.2

Q ss_pred             HHHHHHhHHhhhcchHHhHHhhHHhHHhhhhhhHHHHHHHHHHHhHhhHhhHHHhhhHHH--HhhhhHHHHHHHHHHHHH
Q 006565          132 YTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEV--LKSRSTAAEARLAAAREQ  209 (640)
Q Consensus       132 ~~~~~~~l~~k~~s~ee~~~~l~k~le~~~~e~~ew~~kYe~~~~~~k~~~~~~AAGIsk--lK~Rkkeae~RL~at~en  209 (640)
                      +...+........-+.....++.--+++.+.+-.+|+.|.-.++..+-+.-+.+..|...  |......  .-|..+...
T Consensus       205 A~~~~~~~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~~~~~~~~~~--~el~~l~~E  282 (511)
T PF09787_consen  205 ALRHYIEYLRESGELQEQLELLKAEGESEEAELQQYKQKAQRILQSKEKLIESLKEGCLEEGFDSSTNS--IELEELKQE  282 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccccccch--hcchhhHHH
Confidence            445677777788888999999999999999999999999888887777665555553321  2211111  348889999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          210 ALSAQEEVEEWKRKYGVAVREAKAALEKAAI----VQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCL  285 (640)
Q Consensus       210 L~RVkDel~Ewkrky~~L~~QAKkAeek~a~----L~er~~~~~q~r~~a~ree~~s~le~kE~kie~~k~ei~~aEq~l  285 (640)
                      .+.+++++..++.++..+..++.-.+.++..    +..... .++..       +...+.. +.++.-...++-+....+
T Consensus       283 ~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~-~~~~~-------~~~~~~~-e~e~~l~~~el~~~~ee~  353 (511)
T PF09787_consen  283 RDHLQEEIQLLERQIEQLRAELQDLEAQLEGEQESFREQPQ-ELSQQ-------LEPELTT-EAELRLYYQELYHYREEL  353 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHH-------HHHHhch-HHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999988777755544    222221 22222       2111211 555555555555555444


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHH
Q 006565          286 TTLRLELKAAESKMRSYEVEISSQKLETKELS  317 (640)
Q Consensus       286 a~~q~eL~e~e~kIk~~e~ei~~le~el~~L~  317 (640)
                      ....   .....++...++++..+..++....
T Consensus       354 ~~~~---s~~~~k~~~ke~E~q~lr~~l~~~~  382 (511)
T PF09787_consen  354 SRQK---SPLQLKLKEKESEIQKLRNQLSARA  382 (511)
T ss_pred             HHhc---ChHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4332   2233344444555555555554433

They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=95.89  E-value=6.6  Score=48.28  Aligned_cols=114  Identities=17%  Similarity=0.216  Sum_probs=76.8

Q ss_pred             HHhhHHHHHHHHhHHhhhcchHHhHHhhHHhHHhhhhhhHHHHHHHHHHHhHhhHhhHHHhh--hHHHHhhhhHHHHHHH
Q 006565          126 KKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCS--EIEVLKSRSTAAEARL  203 (640)
Q Consensus       126 kk~~~~~~~~~~~l~~k~~s~ee~~~~l~k~le~~~~e~~ew~~kYe~~~~~~k~~~~~~AA--GIsklK~Rkkeae~RL  203 (640)
                      .+-++....+++.+...+.++..++..-...+...+++.....+-|-..=-....-+..++.  ..-.++......-.||
T Consensus       226 E~~i~k~~~els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~~l~erp~li~~ke~~~~~k~rl  305 (1141)
T KOG0018|consen  226 EACIEKANDELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEKEEKLAERPELIKVKENASHLKKRL  305 (1141)
T ss_pred             hhhHhhhhHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhcchhhccchhHH
Confidence            67778888899999999999999999999999999988888877765543333333333333  2223344444444677


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          204 AAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAA  239 (640)
Q Consensus       204 ~at~enL~RVkDel~Ewkrky~~L~~QAKkAeek~a  239 (640)
                      .....++..+++-...-...|+-+..|-+...-...
T Consensus       306 ~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~  341 (1141)
T KOG0018|consen  306 EEIEKDIETAKKDYRALKETIERLEKELKAVEGAKE  341 (1141)
T ss_pred             HHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            777777777777777777777777766666663333

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=95.81  E-value=6.4  Score=47.45  Aligned_cols=129  Identities=22%  Similarity=0.256  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          287 TLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAE  366 (640)
Q Consensus       287 ~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaE  366 (640)
                      ..+..|.+.+..|..+..++..++..-..+...+.........++.++..++.+...+..++.++...++....-+.++.
T Consensus       621 ~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~  700 (769)
T PF05911_consen  621 SLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAEAEELQSKISSLEEELEKERALSEELE  700 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhhh
Confidence            33333333333333333333333333333334444444444444444444455555555555555555555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHH-----------HhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          367 KEAKKATELADRERAEAAAA-----------RKGKSEFENLAMERMAVIERVQRQIESLE  415 (640)
Q Consensus       367 ee~kea~e~~~~areead~a-----------q~E~~elQr~~~qrlaeIerl~~qIE~lE  415 (640)
                      ..|.....+..+...+....           ..|...+-..+.++...|..|..|+..|.
T Consensus       701 ~kc~~Le~el~r~~~~~~~~~~~~~~~k~kqe~EiaaAA~KLAECQeTI~sLGkQLksLa  760 (769)
T PF05911_consen  701 AKCRELEEELERMKKEESLQQLANEDKKIKQEKEIAAAAEKLAECQETIASLGKQLKSLA  760 (769)
T ss_pred             hHHHHHHHHHHhhhcccchhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            55555555555544332111           22455555566667666776666665553

The function of this family is unknown.

>KOG0243 consensus Kinesin-like protein [Cytoskeleton]

Probab=95.79  E-value=7.3  Score=47.99  Aligned_cols=153  Identities=11%  Similarity=0.138  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          270 EMKEKATKIEHAEQCLTTL---------RLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQD  340 (640)
Q Consensus       270 kie~~k~ei~~aEq~la~~---------q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~e  340 (640)
                      +|+.+++++.++..+-.++         ..++++....|..++.++..++.+++.+.+.+-....--.-+.++...++..
T Consensus       412 EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~  491 (1041)
T KOG0243|consen  412 EIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSK  491 (1041)
T ss_pred             HHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            5556666666665544433         3355666667777777777777777777776654444333444444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          341 KVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTD  420 (640)
Q Consensus       341 i~~L~ekl~se~er~ee~~~rleeaEee~kea~e~~~~areead~aq~E~~elQr~~~qrlaeIerl~~qIE~lEre~e~  420 (640)
                      +..-...+.+..+.+......+..       ....++........+......+++..-+....+.-+-..|++..+--..
T Consensus       492 L~~~~~el~~~~ee~~~~~~~l~~-------~e~ii~~~~~se~~l~~~a~~l~~~~~~s~~d~s~l~~kld~~~~~~d~  564 (1041)
T KOG0243|consen  492 LQNKNKELESLKEELQQAKATLKE-------EEEIISQQEKSEEKLVDRATKLRRSLEESQDDLSSLFEKLDRKDRLDDD  564 (1041)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccc
Confidence            444444444444444444444333       3333333333333333333444444433333344343444444443333


Q ss_pred             hHHHHhhhc
Q 006565          421 LTNEVNRIR  429 (640)
Q Consensus       421 Le~E~~~l~  429 (640)
                      ...-+..+.
T Consensus       565 n~~~~~~~~  573 (1041)
T KOG0243|consen  565 NQEVIDDFQ  573 (1041)
T ss_pred             cHHHHHHHh
Confidence            333333333

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=95.76  E-value=2.6  Score=42.56  Aligned_cols=172  Identities=16%  Similarity=0.222  Sum_probs=81.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          308 SQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAAR  387 (640)
Q Consensus       308 ~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~kea~e~~~~areead~aq  387 (640)
                      .++..=+.|.+....+...++..+.-...|..++..|...+.+..+-.    ...+.++++...++..+....+....+.
T Consensus        12 dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal----~~aK~l~eEledLk~~~~~lEE~~~~L~   87 (193)
T PF14662_consen   12 DLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQAL----QKAKALEEELEDLKTLAKSLEEENRSLL   87 (193)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444555555555555555555556666666655555543221    2222223333333333333333333333


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 006565          388 KGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSK-VALLEARVEEREKEIESLLESNNEQRAS  466 (640)
Q Consensus       388 ~E~~elQr~~~qrlaeIerl~~qIE~lEre~e~Le~E~~~l~~sEl~al~k-v~~lE~~vee~e~eiE~L~~~~~eq~~~  466 (640)
                      .....+.+..-.+.+.|+.++..-..+..+.+.+......|- ++..++.. +=..+.-+-.++..+.+- ....+.+..
T Consensus        88 aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~-~~~~~Lq~Ql~~~e~l~~~~da~l~e~-t~~i~eL~~  165 (193)
T PF14662_consen   88 AQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELA-TEKATLQRQLCEFESLICQRDAILSER-TQQIEELKK  165 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHH
Confidence            333444444444444555555554555555555555555554 44455554 444555555555555555 455555555


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 006565          467 TVKKLEDLLESERRSRAAA  485 (640)
Q Consensus       467 ~l~~le~~le~~re~l~e~  485 (640)
                      .|..+....+.+|..++..
T Consensus       166 ~ieEy~~~teeLR~e~s~L  184 (193)
T PF14662_consen  166 TIEEYRSITEELRLEKSRL  184 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            5555555444444444433

>TIGR00634 recN DNA repair protein RecN

Probab=95.69  E-value=5  Score=46.48  Aligned_cols=44  Identities=11%  Similarity=0.012  Sum_probs=25.4

Q ss_pred             hhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          187 SEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVRE  230 (640)
Q Consensus       187 AGIsklK~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L~~Q  230 (640)
                      +|+..+......+..++..+...|...+....++.++++.+..|
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~q  197 (563)
T TIGR00634       154 AGANEKVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQ  197 (563)
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            34666666666666666666666655555555555555555443

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=95.66  E-value=1.6  Score=41.05  Aligned_cols=44  Identities=11%  Similarity=0.225  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          313 TKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFE  356 (640)
Q Consensus       313 l~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~e  356 (640)
                      +..|......+...+..+...+..+..++.............|+
T Consensus         5 ~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE   48 (132)
T PF07926_consen    5 LSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYE   48 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444444444433333333333

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>PF13870 DUF4201: Domain of unknown function (DUF4201)

Probab=95.56  E-value=2.7  Score=41.33  Aligned_cols=131  Identities=21%  Similarity=0.213  Sum_probs=99.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          267 KEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSY-EVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLE  345 (640)
Q Consensus       267 kE~kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~-e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~  345 (640)
                      +++.+...+..+......++.+...|...+.--.++ ..++..++-+-..|..+.+.-+.++..+.......-+-+.|+.
T Consensus         4 k~~~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~k   83 (177)
T PF13870_consen    4 KRNEISKLRLKNITLKHQLAKLEEQLRQKEELGEGLHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVK   83 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455677777777777777777777776666433333 3677778888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 006565          346 QKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLA  397 (640)
Q Consensus       346 ekl~se~er~ee~~~rleeaEee~kea~e~~~~areead~aq~E~~elQr~~  397 (640)
                      +++......+......+...+.....++..+..+...-+.++.....++...
T Consensus        84 eKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~  135 (177)
T PF13870_consen   84 EKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQG  135 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            8888888888888888888888888888888777777777777777765443

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=95.55  E-value=6.9  Score=46.07  Aligned_cols=414  Identities=13%  Similarity=0.202  Sum_probs=217.6

Q ss_pred             HHhhhcCchhHHHHHHHHHHhhHHhHHHHHHHhhHHhHHHHHhhHHHHHHHHhHHhhhcchHHhHHhhHHhHHhhhhhhH
Q 006565           86 LMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEIS  165 (640)
Q Consensus        86 l~~~c~s~~~k~~~~~k~le~~~k~~~~~~k~~e~~i~d~kk~~~~~~~~~~~l~~k~~s~ee~~~~l~k~le~~~~e~~  165 (640)
                      ....|.-+...-.-|-..|+..-+-...+-.--+..|.++.+.-...+.-.++|+..+.+|.+=+.+=...++       
T Consensus       301 ~K~slq~~~~tq~~le~~lq~~~k~~~qlt~eKe~~~Ee~nk~k~~~s~~v~e~qtti~~L~~lL~~Eqqr~~-------  373 (786)
T PF05483_consen  301 IKQSLQESESTQKALEEDLQQATKTLIQLTEEKEAQMEELNKAKAQHSFVVTELQTTICNLKELLTTEQQRLK-------  373 (786)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence            3344443333333333344444344444444557888899888888899999999988888764433222221       


Q ss_pred             HHHHHHHHHHhHhhHhhHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHh
Q 006565          166 DWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAI-VQER  244 (640)
Q Consensus       166 ew~~kYe~~~~~~k~~~~~~AAGIsklK~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAeek~a~-L~er  244 (640)
                          +|++-+.-.-..-..-++.+.....-+.-.+-.|.-....|..-.. +.+-+++........+.++..+.- |+.+
T Consensus       374 ----~~ed~lk~l~~eLqkks~eleEmtk~k~~ke~eleeL~~~L~e~qk-ll~ekk~~eki~E~lq~~eqel~~llq~~  448 (786)
T PF05483_consen  374 ----KNEDQLKILTMELQKKSSELEEMTKQKNNKEVELEELKKILAEKQK-LLDEKKQFEKIAEELQGTEQELTGLLQIR  448 (786)
T ss_pred             ----HhHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence                1333222111111112233322222222233346666777776665 334445677777777777744443 3332


Q ss_pred             hh--HHHhhhHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHH
Q 006565          245 TS--KEMQQREDVLR---EEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEK  319 (640)
Q Consensus       245 ~~--~~~q~r~~a~r---ee~~s~le~kE~kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ek  319 (640)
                      ..  ..++..+.++.   .....++..+..+++.-+.+-.+.-.....+..+=..+.........+++.....|.....+
T Consensus       449 ekev~dLe~~l~~~~~~eq~yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~qedi~~~k~q  528 (786)
T PF05483_consen  449 EKEVHDLEIQLTTIKESEQHYSKQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQEDINNSKKQ  528 (786)
T ss_pred             hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            21  13333322222   12222344444444333333233323333333333344444444444555555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          320 LEAVNAKAQSFEREARIMEQDKVYLEQKYKSEF------------------ERFEEVQERCKVAEKEAKKATELADRERA  381 (640)
Q Consensus       320 le~~~~eies~e~el~~L~~ei~~L~ekl~se~------------------er~ee~~~rleeaEee~kea~e~~~~are  381 (640)
                      .+.+...|++++..-..|..++..+...+..-.                  -.+......++.++..|...+..+.....
T Consensus       529 ee~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~kq~k~lenk~~~LrKqvEnk~K  608 (786)
T PF05483_consen  529 EEKMLKQIENLEETNTQLRNELESVKEELKQKGEEVKCKLDKSEENARSIECEILKKEKQMKILENKCNNLRKQVENKNK  608 (786)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            555555666665555555555554443333222                  12222334555666667777777777777


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH----HhhhcHHHHH----------------------H
Q 006565          382 EAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNE----VNRIRESELE----------------------A  435 (640)
Q Consensus       382 ead~aq~E~~elQr~~~qrlaeIerl~~qIE~lEre~e~Le~E----~~~l~~sEl~----------------------a  435 (640)
                      -....+.+...+.+...---+++..++..|..++-+++++..-    .+.+. .+++                      |
T Consensus       609 ~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~eE~~~~~~-keie~K~~~e~~L~~EveK~k~~a~EA  687 (786)
T PF05483_consen  609 NIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKKHEEETDKYQ-KEIESKSISEEELLGEVEKAKLTADEA  687 (786)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence            7777788888887777555555666666666666666555431    22222 2211                      1


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhh
Q 006565          436 LSKVALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQELTK  512 (640)
Q Consensus       436 l~kv~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~l~e~nrrleal~~e~~~lqs~id~Leg~~~~  512 (640)
                      +....+.+-++.---.++-.||.++--+.-.-|.....+|...+-.=.++..--.++-+++..++..|+.|..++..
T Consensus       688 vK~q~EtdlrCQhKIAeMVALMEKHK~qYDkiVEEkDaEL~~~k~KE~E~~s~k~sLE~ELs~lk~el~slK~QLk~  764 (786)
T PF05483_consen  688 VKLQEETDLRCQHKIAEMVALMEKHKHQYDKIVEEKDAELGLYKKKEQEQSSHKASLELELSNLKNELSSLKKQLKT  764 (786)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            11122333333333345566666666666677777777777776666666666677777788888888887666543

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=95.54  E-value=4.1  Score=44.20  Aligned_cols=216  Identities=18%  Similarity=0.183  Sum_probs=122.2

Q ss_pred             hhcchHHhHHhhHHhHHhhhhhhHHHHHHHHHHHhHhhHhhHHHhhhH------H----HHhhhhHHHHHHHHHHHHHHH
Q 006565          142 ENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEI------E----VLKSRSTAAEARLAAAREQAL  211 (640)
Q Consensus       142 k~~s~ee~~~~l~k~le~~~~e~~ew~~kYe~~~~~~k~~~~~~AAGI------s----klK~Rkkeae~RL~at~enL~  211 (640)
                      ||.|=-|-+.-|++.||....|.-.|+..+++.-..+..+...+..=+      .    ..-......-.-|..+++.-.
T Consensus         3 KL~SK~eAL~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk   82 (319)
T PF09789_consen    3 KLQSKSEALLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNK   82 (319)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHH
Confidence            566667888999999999999999999999998877666666554333      1    111244555566777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          212 SAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLE  291 (640)
Q Consensus       212 RVkDel~Ewkrky~~L~~QAKkAeek~a~L~er~~~~~q~r~~a~ree~~s~le~kE~kie~~k~ei~~aEq~la~~q~e  291 (640)
                      +...++.+.+.++..+.-.-|--+.+++....... ....+...             .+-+.+..+++.+..++..+..+
T Consensus        83 ~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~-~~~~~~~~-------------~ere~lV~qLEk~~~q~~qLe~d  148 (319)
T PF09789_consen   83 KLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDE-GIGARHFP-------------HEREDLVEQLEKLREQIEQLERD  148 (319)
T ss_pred             HHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhc-cccccccc-------------hHHHHHHHHHHHHHHHHHHHHHH
Confidence            77888888888877777776666666666544432 33222111             13334444444444444444444


Q ss_pred             HHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          292 LKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKK  371 (640)
Q Consensus       292 L~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~ke  371 (640)
                      |.....+......+....+.....|+..+.-+-.--.+-.-.+..|--|...|.              +++..++++..-
T Consensus       149 ~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~--------------erl~q~qeE~~l  214 (319)
T PF09789_consen  149 LQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLK--------------ERLKQLQEEKEL  214 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHH--------------HHHHHHHHHHHH
Confidence            444444444444444444444444443332222111111113555555555553              444555555555


Q ss_pred             HHHHHHHHHHHHHH
Q 006565          372 ATELADRERAEAAA  385 (640)
Q Consensus       372 a~e~~~~areead~  385 (640)
                      +.--+.+++..++.
T Consensus       215 ~k~~i~KYK~~le~  228 (319)
T PF09789_consen  215 LKQTINKYKSALER  228 (319)
T ss_pred             HHHHHHHHHHHHHh
Confidence            55555666665553

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=95.54  E-value=4.4  Score=43.74  Aligned_cols=137  Identities=19%  Similarity=0.284  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHhhhcHHHHHHHHH-HHHHHHHHHH
Q 006565          373 TELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTN---EVNRIRESELEALSK-VALLEARVEE  448 (640)
Q Consensus       373 ~e~~~~areead~aq~E~~elQr~~~qrlaeIerl~~qIE~lEre~e~Le~---E~~~l~~sEl~al~k-v~~lE~~vee  448 (640)
                      ......+...+...+.+...+.........-+..+......+..++.+|..   +.......++..+.. +......|+.
T Consensus       148 ~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~  227 (325)
T PF08317_consen  148 EGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEA  227 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHH
Confidence            333333433333344444444333333333333333333444444333332   344455556777777 7777888888


Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHh
Q 006565          449 REKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLS----LEVQSAQAKLDEMQQEL  510 (640)
Q Consensus       449 ~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~l~e~nrrleal~----~e~~~lqs~id~Leg~~  510 (640)
                      .+.++.++ +.....+...|+.+...+.....+++++.+..+.-+    .++..++..++.||.+.
T Consensus       228 ~k~~l~el-~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le~~~  292 (325)
T PF08317_consen  228 KKKELAEL-QEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDALEKLT  292 (325)
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence            88888888 888888888888888888888888888887776544    46788888888888774

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=95.53  E-value=7  Score=46.02  Aligned_cols=299  Identities=17%  Similarity=0.221  Sum_probs=152.2

Q ss_pred             HhhhhcccCCchHH------HHHHHHHHhhhchHHHHHHHHHhHHHhHHHHHHhhhcCchh----------HHHHHHHHH
Q 006565           41 SEYETSCHGPGKWQ------KLATFLQQSSEGPILDLVKRLIDQIGSERSSLMLKYRSIED----------NMKLLKKQL  104 (640)
Q Consensus        41 ~~y~~s~~G~g~~~------k~~~~L~~~l~~~~~d~~~~~~~~i~~~~~~l~~~c~s~~~----------k~~~~~k~l  104 (640)
                      +-|+.++...|+.-      ..+.|....|-+|..-..-     =++-+++-...|.++++          .|.+|..+|
T Consensus       288 s~~eiiin~ng~SsT~e~ser~s~~v~~el~~~~~~~e~-----~es~Rs~s~~n~~~~d~~q~eLdK~~~~i~~Ln~~l  362 (961)
T KOG4673|consen  288 SPYEIIINKNGRSSTDEISERISDFVSRELDSRLDTSEL-----NESQRSSSATNVSDSDDVQLELDKTKKEIKMLNNAL  362 (961)
T ss_pred             CcceeecCCCCCccccccccccchHHHHHhccchhhHHh-----hhccCCCCCccccCchhHHHHHHHHHHHHHHHHHHH
Confidence            34555555544432      3445666666666554433     34556666777888887          355666666


Q ss_pred             HhhH-------HhHHHHHHHhhHHhH-HHHHh--hHHHHHHHHhHHhhhcchHHhHHhhHHhHHhhhhhhHHHHHHHH--
Q 006565          105 EDSE-------RYKSEYLKRYDDAIN-DKKKL--ADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYD--  172 (640)
Q Consensus       105 e~~~-------k~~~~~~k~~e~~i~-d~kk~--~~~~~~~~~~l~~k~~s~ee~~~~l~k~le~~~~e~~ew~~kYe--  172 (640)
                      ++.+       +-+..+---+-.... |+++-  +-.+++-..+.--++..+|-++..+.|.-|+++.+.-..++-..  
T Consensus       363 eaReaqll~~e~~ka~lee~~~n~~~e~~~~k~~~s~~ssl~~e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~  442 (961)
T KOG4673|consen  363 EAREAQLLADEIAKAMLEEEQLNSVTEDLKRKSNESEVSSLREEYHQRVATLEKKVQALTKERDALRREQKSLKKELAAA  442 (961)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence            6655       222222221111221 22221  11223333444455566677777777777777777664444333  


Q ss_pred             ----------HHHhHhhHhhH----H---HhhhHHHHhhhhHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          173 ----------QVLTKQKAMED----Q---VCSEIEVLKSRSTAAE----------ARLAAAREQALSAQEEVEEWKRKYG  225 (640)
Q Consensus       173 ----------~~~~~~k~~~~----~---~AAGIsklK~Rkkeae----------~RL~at~enL~RVkDel~Ewkrky~  225 (640)
                                +.|+...+.-+    .   -.+-|.+|+.+-++++          .+|.+-.+-|.++.+-=.|+++.+.
T Consensus       443 l~~DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~  522 (961)
T KOG4673|consen  443 LLKDELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQ  522 (961)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence                      33433322222    1   2345677777777766          3444555555555555566776554


Q ss_pred             HHHHHH----HHHHHHHHHHHHhhhHHHhhhHHHHHHHHhHHHHH--HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          226 VAVREA----KAALEKAAIVQERTSKEMQQREDVLREEFSSTLAE--KEEEMK--EKATKIEHAEQCLTTLRLELKAAES  297 (640)
Q Consensus       226 ~L~~QA----KkAeek~a~L~er~~~~~q~r~~a~ree~~s~le~--kE~kie--~~k~ei~~aEq~la~~q~eL~e~e~  297 (640)
                      ......    ++..+.+..+...+. .++.+..|+.+.+..+...  |++-++  +++..-...=+....++..|.-++.
T Consensus       523 E~I~k~~ae~~rq~~~~~~sr~~~~-~le~~~~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq  601 (961)
T KOG4673|consen  523 ETIEKHQAELTRQKDYYSNSRALAA-ALEAQALAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKEQ  601 (961)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            443322    222255555666664 6666655555555554332  222222  4444444445555555555544443


Q ss_pred             HHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Q 006565          298 KMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREAR----IMEQDKVYLEQKY  348 (640)
Q Consensus       298 kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~----~L~~ei~~L~ekl  348 (640)
                      ..-..+   ..++.+|..|..+|..++-+.+.+..++-    -|-..|..|..-+
T Consensus       602 ~aarrE---d~~R~Ei~~LqrRlqaaE~R~eel~q~v~~TTrPLlRQIE~lQ~tl  653 (961)
T KOG4673|consen  602 QAARRE---DMFRGEIEDLQRRLQAAERRCEELIQQVPETTRPLLRQIEALQETL  653 (961)
T ss_pred             HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHH
Confidence            333222   34556666777777777666666665543    3444444443333

>TIGR03017 EpsF chain length determinant protein EpsF

Probab=95.52  E-value=5.2  Score=44.38  Aligned_cols=35  Identities=11%  Similarity=0.055  Sum_probs=26.8

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          257 REEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLE  291 (640)
Q Consensus       257 ree~~s~le~kE~kie~~k~ei~~aEq~la~~q~e  291 (640)
                      ........+|++.++..++.++..++..+...+.+
T Consensus       166 ~~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~  200 (444)
T TIGR03017       166 VEPAQKAALWFVQQIAALREDLARAQSKLSAYQQE  200 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55556667888888888888888888888887664

Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=95.45  E-value=9.2  Score=46.83  Aligned_cols=163  Identities=16%  Similarity=0.206  Sum_probs=78.9

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHh-----hHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          257 REEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEIS-----SQKLETKELSEKLEAVNAKAQSFE  331 (640)
Q Consensus       257 ree~~s~le~kE~kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~-----~le~el~~L~ekle~~~~eies~e  331 (640)
                      ..++....+.....+..++..+...++....++... -+.++|+-++....     ....+..........+...+..+.
T Consensus       190 e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~-~~~~~Ie~l~~k~~~v~y~~~~~ey~~~k~~~~r~k~~~r~l~  268 (1072)
T KOG0979|consen  190 EKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERE-RKKSKIELLEKKKKWVEYKKHDREYNAYKQAKDRAKKELRKLE  268 (1072)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccccchHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            445555555555555555555555555555554332 12223332222211     112222223333333344444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 006565          332 REARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQI  411 (640)
Q Consensus       332 ~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~kea~e~~~~areead~aq~E~~elQr~~~qrlaeIerl~~qI  411 (640)
                      +....+..-+..|+.....-+.++......|.++...+.+.-+..+....++..+......+++..-.+.+.|+++..-|
T Consensus       269 k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i  348 (1072)
T KOG0979|consen  269 KEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMI  348 (1072)
T ss_pred             HhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444444555555555555555555555555566666666666666666666666666666655555


Q ss_pred             HHHHHHHHH
Q 006565          412 ESLERQKTD  420 (640)
Q Consensus       412 E~lEre~e~  420 (640)
                      ..++.++..
T Consensus       349 ~~~q~el~~  357 (1072)
T KOG0979|consen  349 LDAQAELQE  357 (1072)
T ss_pred             HHHHhhhhh
Confidence            555554433

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=95.42  E-value=1.7  Score=51.79  Aligned_cols=74  Identities=15%  Similarity=0.154  Sum_probs=48.9

Q ss_pred             hhcchHHhHHhhHHhHHhhhhhhHHHHHHHHHHHhHhhHhhHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          142 ENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWK  221 (640)
Q Consensus       142 k~~s~ee~~~~l~k~le~~~~e~~ew~~kYe~~~~~~k~~~~~~AAGIsklK~Rkkeae~RL~at~enL~RVkDel~Ewk  221 (640)
                      -..=|+++...+.++|+.++.....|+.++.-...                 ....-...+|.....+|..++-....-+
T Consensus       195 a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~-----------------~~~~~~~~~L~~l~~ql~~a~~~~~~a~  257 (754)
T TIGR01005       195 AADFLAPEIADLSKQSRDAEAEVAAYRAQSDLLMG-----------------NNATLATQQLAELNTELSRARANRAAAE  257 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc-----------------CCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456888888999999999999999987643211                 1112233566666677777666666666


Q ss_pred             HHHHHHHHHHH
Q 006565          222 RKYGVAVREAK  232 (640)
Q Consensus       222 rky~~L~~QAK  232 (640)
                      ..|+.+..+..
T Consensus       258 a~~~~l~~~l~  268 (754)
T TIGR01005       258 GTADSVKKALQ  268 (754)
T ss_pred             HHHHHHHHHHh
Confidence            66666666554

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=95.38  E-value=8.2  Score=45.86  Aligned_cols=45  Identities=27%  Similarity=0.223  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          439 VALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAA  484 (640)
Q Consensus       439 v~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~l~e  484 (640)
                      ..++...++.+...++.. ....++++..+.....+|+-++.....
T Consensus       561 ~~e~~~~~~~Lq~~~ek~-~~~le~i~~~~~e~~~ele~~~~k~~r  605 (698)
T KOG0978|consen  561 AQEAKQSLEDLQIELEKS-EAKLEQIQEQYAELELELEIEKFKRKR  605 (698)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555555555 555555555555555555544444333

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=95.37  E-value=5  Score=43.29  Aligned_cols=166  Identities=24%  Similarity=0.322  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          275 ATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQ-SFEREARIMEQDKVYLEQKYKSEFE  353 (640)
Q Consensus       275 k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eie-s~e~el~~L~~ei~~L~ekl~se~e  353 (640)
                      ...+....++..+++.++.-.-.+.+.+..++..+...--.+..+-+.-+..|. .+-+++..|+.++..|-..|+.+.+
T Consensus        26 ~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l~keKe~L~~~~e~EEE  105 (310)
T PF09755_consen   26 RKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFISNTLLKKLQQLKKEKETLALKYEQEEE  105 (310)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444444444444444444444444444443333333332 2344455555555555443333322


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcHHH
Q 006565          354 RFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLA-MERMAVIERVQRQIESLERQKTDLTNEVNRIRESE  432 (640)
Q Consensus       354 r~ee~~~rleeaEee~kea~e~~~~areead~aq~E~~elQr~~-~qrlaeIerl~~qIE~lEre~e~Le~E~~~l~~sE  432 (640)
                      .+                 +   .....-+...+.+..++.... .+-...|.+|..+|.+++++.......+.+|+ .|
T Consensus       106 ~l-----------------t---n~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr-~E  164 (310)
T PF09755_consen  106 FL-----------------T---NDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLR-RE  164 (310)
T ss_pred             HH-----------------H---HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HH
Confidence            21                 1   122223344455555555444 22334445555555555554444444444444 33


Q ss_pred             -------HHHHHH--HHHHHHHHHHHHHHHHHHHHhhHH
Q 006565          433 -------LEALSK--VALLEARVEEREKEIESLLESNNE  462 (640)
Q Consensus       433 -------l~al~k--v~~lE~~vee~e~eiE~L~~~~~e  462 (640)
                             ++.=..  |..|-++++.+..+...| +..++
T Consensus       165 KVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~L-q~~l~  202 (310)
T PF09755_consen  165 KVDLENTLEQEQEALVNRLWKQMDKLEAEKRRL-QEKLE  202 (310)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHc
Confidence                   222222  444444444444444444 44443

>PRK10698 phage shock protein PspA; Provisional

Probab=95.27  E-value=4.2  Score=41.80  Aligned_cols=113  Identities=13%  Similarity=0.253  Sum_probs=75.6

Q ss_pred             HhHHHHHHHhhHHhHHHHHhhHHHHHHHHhHHhhhcchHHhHHhhHHhHHhhhhhhHHHHHHHHHHHhHhh-HhhH----
Q 006565          109 RYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQK-AMED----  183 (640)
Q Consensus       109 k~~~~~~k~~e~~i~d~kk~~~~~~~~~~~l~~k~~s~ee~~~~l~k~le~~~~e~~ew~~kYe~~~~~~k-~~~~----  183 (640)
                      +.---|.+-.++.+.+.++....+.+..              ..+..+++.....+.+|..+=..+|..-. -+-.    
T Consensus        27 k~l~q~i~em~~~l~~~r~alA~~~A~~--------------k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~   92 (222)
T PRK10698         27 KLVRLMIQEMEDTLVEVRSTSARALAEK--------------KQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALI   92 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            4445555555555555544444444433              34556778888889999999888887332 1111    


Q ss_pred             ---HHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          184 ---QVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAAL  235 (640)
Q Consensus       184 ---~~AAGIsklK~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAe  235 (640)
                         .++..|..|+........-+.....++...+..+.+++.+.++|...++.|.
T Consensus        93 ~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~  147 (222)
T PRK10698         93 EKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAAS  147 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               2555677777777777777777777888888888888888888877777776

>PF13514 AAA_27: AAA domain

Probab=95.19  E-value=12  Score=46.79  Aligned_cols=32  Identities=9%  Similarity=0.055  Sum_probs=13.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 006565          475 LESERRSRAAANAMAERLSLEVQSAQAKLDEM  506 (640)
Q Consensus       475 le~~re~l~e~nrrleal~~e~~~lqs~id~L  506 (640)
                      ++.....+....++--.+..=..++..-++.+
T Consensus       942 ~e~~~a~l~~~~~~~~~~~la~~lL~~a~~~~  973 (1111)
T PF13514_consen  942 REEAEAELEELAEEWAALRLAAELLEEAIERY  973 (1111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333444444444444444

>TIGR00634 recN DNA repair protein RecN

Probab=95.17  E-value=8.3  Score=44.68  Aligned_cols=185  Identities=10%  Similarity=0.107  Sum_probs=96.2

Q ss_pred             HHhhhhhhHHHHHHHHHHHhHhhHhhHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH
Q 006565          157 VDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQE------EVEEWKRKYGVAVRE  230 (640)
Q Consensus       157 le~~~~e~~ew~~kYe~~~~~~k~~~~~~AAGIsklK~Rkkeae~RL~at~enL~RVkD------el~Ewkrky~~L~~Q  230 (640)
                      ||..-+ ..+++..|..+..+.+...    ..+..++.+..+...+++-.+-+++.++.      +-.+++..++.|.+-
T Consensus       150 LD~~~~-~~~~~~~~~~~~~~~~~~~----~~L~~l~~~~~~~~~eld~L~~ql~ELe~~~l~~~E~e~L~~e~~~L~n~  224 (563)
T TIGR00634       150 LDTFAG-ANEKVKAYRELYQAWLKAR----QQLKDRQQKEQELAQRLDFLQFQLEELEEADLQPGEDEALEAEQQRLSNL  224 (563)
T ss_pred             HHHhcC-chHHHHHHHHHHHHHHHHH----HHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCcCCCcHHHHHHHHHHHhCH
Confidence            444333 3456666666665555433    34566667777777777777777666654      334466666666663


Q ss_pred             HHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHH
Q 006565          231 AKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQK  310 (640)
Q Consensus       231 AKkAeek~a~L~er~~~~~q~r~~a~ree~~s~le~kE~kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le  310 (640)
                      .+-.. .+...-.............+...+......+. .+  .-..+......+....-.+.++...+..+-..+..-.
T Consensus       225 e~i~~-~~~~~~~~L~~~~~~~~~~~~~~l~~~~~~l~-~~--~d~~~~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp  300 (563)
T TIGR00634       225 EKLRE-LSQNALAALRGDVDVQEGSLLEGLGEAQLALA-SV--IDGSLRELAEQVGNALTEVEEATRELQNYLDELEFDP  300 (563)
T ss_pred             HHHHH-HHHHHHHHHhCCccccccCHHHHHHHHHHHHH-Hh--hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence            33222 22211111110000000011333333333333 21  2334455555555666666666666666667776666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          311 LETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKS  350 (640)
Q Consensus       311 ~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~s  350 (640)
                      .++..+++++..+..-...|...+..+...+..+..++..
T Consensus       301 ~~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~  340 (563)
T TIGR00634       301 ERLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQ  340 (563)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence            7777777777766666655555555555555555444443

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure

Probab=95.04  E-value=8.6  Score=44.16  Aligned_cols=205  Identities=21%  Similarity=0.229  Sum_probs=102.4

Q ss_pred             HHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
Q 006565          298 KMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFER-----------FEEVQERCKVAE  366 (640)
Q Consensus       298 kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er-----------~ee~~~rleeaE  366 (640)
                      ..-.+-.+...+...+..+.......+.++..|..++...-+.++.+-..+...+..           ++++....+.+.
T Consensus       208 ~~~~~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~~~~~~~~~~~el~~l~~E~~~~~  287 (511)
T PF09787_consen  208 HYIEYLRESGELQEQLELLKAEGESEEAELQQYKQKAQRILQSKEKLIESLKEGCLEEGFDSSTNSIELEELKQERDHLQ  287 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccccccchhcchhhHHHHHHHH
Confidence            344444555566667777777777777777777766666656655554444442211           344444555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhHHHHhhhcHHHHHHHHH-HHHH
Q 006565          367 KEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESL---ERQKTDLTNEVNRIRESELEALSK-VALL  442 (640)
Q Consensus       367 ee~kea~e~~~~areead~aq~E~~elQr~~~qrlaeIerl~~qIE~l---Ere~e~Le~E~~~l~~sEl~al~k-v~~l  442 (640)
                      +++..+..+++..+.++.....+...-....-+.   ...+..++...   +-++..+..+...++    +.+.. .+.+
T Consensus       288 ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~---~~~~~~~~~~~~~~e~e~~l~~~el~~~~----ee~~~~~s~~  360 (511)
T PF09787_consen  288 EEIQLLERQIEQLRAELQDLEAQLEGEQESFREQ---PQELSQQLEPELTTEAELRLYYQELYHYR----EELSRQKSPL  360 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---HHHHHHHHHHHhchHHHHHHHHHHHHHHH----HHHHHhcChH
Confidence            5555555555444444433333222211111111   11111111111   222222222333333    22223 4555


Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Q 006565          443 EARVEEREKEIESLLESNNEQRA--STVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQEL  510 (640)
Q Consensus       443 E~~vee~e~eiE~L~~~~~eq~~--~~l~~le~~le~~re~l~e~nrrleal~~e~~~lqs~id~Leg~~  510 (640)
                      ..++.+++.++..| ......+.  +.-..++..+..+.+.+-+....++.+..+...+.=.++.++..+
T Consensus       361 ~~k~~~ke~E~q~l-r~~l~~~~~~s~~~elE~rl~~lt~~Li~KQ~~lE~l~~ek~al~lqlErl~~~l  429 (511)
T PF09787_consen  361 QLKLKEKESEIQKL-RNQLSARASSSSWNELESRLTQLTESLIQKQTQLESLGSEKNALRLQLERLETQL  429 (511)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHhccCCcHhHHHHHhhccHHHHHHHHHHHHHHhhhhhccccHHHHHHHH
Confidence            56666666666666 44443333  233466777777777777777777777776666666666666554

They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=95.02  E-value=11  Score=45.47  Aligned_cols=14  Identities=29%  Similarity=0.330  Sum_probs=6.7

Q ss_pred             chhhhhhccCCChH
Q 006565          613 FGAELLQLRNPNKK  626 (640)
Q Consensus       613 ~g~~l~~l~~~~k~  626 (640)
                      +|.+|+..-.....
T Consensus       729 ~~eel~~~~~di~~  742 (980)
T KOG0980|consen  729 LGEELLPKELDIDQ  742 (980)
T ss_pred             HhHHhccccchhhH
Confidence            56666544433333

>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]

Probab=94.99  E-value=10  Score=44.78  Aligned_cols=111  Identities=14%  Similarity=0.198  Sum_probs=82.3

Q ss_pred             HhHHHHHHHhhHHhHHHHHhhHHHHHHHHhHHhhhcchHHhHHhhHHhHHhhhhhhHHHHHHHHHHHhHhhHhhHHHhhh
Q 006565          109 RYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSE  188 (640)
Q Consensus       109 k~~~~~~k~~e~~i~d~kk~~~~~~~~~~~l~~k~~s~ee~~~~l~k~le~~~~e~~ew~~kYe~~~~~~k~~~~~~AAG  188 (640)
                      |..+...+-|+.-+..+.++-..    +..++   .+++++|..+.++++-....+.+-.+|-.+..+.+...--....-
T Consensus        87 k~~~i~~r~~~~~~dr~~~~~~~----l~~~q---~a~~~~e~~lq~q~e~~~n~~q~~~~k~~el~~e~~~k~ae~~~l  159 (716)
T KOG4593|consen   87 KAQSILARNYEAEVDRKHKLLTR----LRQLQ---EALKGQEEKLQEQLERNRNQCQANLKKELELLREKEDKLAELGTL  159 (716)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH----HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888899999888443322    22333   678889999999999999999999999888888877666666777


Q ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          189 IEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGV  226 (640)
Q Consensus       189 IsklK~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~  226 (640)
                      |-+|.++-+++...+.--...+.++--.+...++.|+-
T Consensus       160 r~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~  197 (716)
T KOG4593|consen  160 RNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKELDR  197 (716)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77888888877777777777666665555554444443

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=94.81  E-value=11  Score=44.10  Aligned_cols=113  Identities=18%  Similarity=0.260  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcHHH--------HHHHHH-HHHHHHHHHHHHHHHHHH---HHhhH
Q 006565          394 ENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESE--------LEALSK-VALLEARVEEREKEIESL---LESNN  461 (640)
Q Consensus       394 Qr~~~qrlaeIerl~~qIE~lEre~e~Le~E~~~l~~sE--------l~al~k-v~~lE~~vee~e~eiE~L---~~~~~  461 (640)
                      .-+++=...++++.+..|..++++++.|..+...-. +.        +++..- +...+..+..+-.+++.+   +....
T Consensus       234 ~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N-~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~  312 (629)
T KOG0963|consen  234 AAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKAN-SSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEER  312 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333455556666777777777777777766654443 22        222222 333444444444444433   12233


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 006565          462 EQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQ  508 (640)
Q Consensus       462 eq~~~~l~~le~~le~~re~l~e~nrrleal~~e~~~lqs~id~Leg  508 (640)
                      +.-..+|..++.++......+.+..+++.+- .-|+-++..+..|..
T Consensus       313 e~~~~qI~~le~~l~~~~~~leel~~kL~~~-sDYeeIK~ELsiLk~  358 (629)
T KOG0963|consen  313 EKHKAQISALEKELKAKISELEELKEKLNSR-SDYEEIKKELSILKA  358 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccHHHHHHHHHHHHH
Confidence            4456677777777777777777776666543 334455555554443

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=94.81  E-value=5.2  Score=40.52  Aligned_cols=70  Identities=24%  Similarity=0.326  Sum_probs=37.8

Q ss_pred             HHhhHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          298 KMRSYEVEISSQKL-ETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEK  367 (640)
Q Consensus       298 kIk~~e~ei~~le~-el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEe  367 (640)
                      .|+.|=++|=.... =|+.|.+....+.......++....+..+..+|.+-+..+.....++...+...++
T Consensus        13 ~iK~YYndIT~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~k   83 (201)
T PF13851_consen   13 EIKNYYNDITLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEK   83 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444433332 24555555555555566666666666666666666665555555555555555433

>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]

Probab=94.74  E-value=7.3  Score=46.11  Aligned_cols=107  Identities=23%  Similarity=0.298  Sum_probs=62.4

Q ss_pred             hHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhHH--HH
Q 006565          188 EIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSST--LA  265 (640)
Q Consensus       188 GIsklK~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAeek~a~L~er~~~~~q~r~~a~ree~~s~--le  265 (640)
                      ..+..++|-.+++.-+..+.-++..+.....-..+....+..|-+-.+.+...+..+.. .++      ++.....  .+
T Consensus        22 q~a~~ttr~~e~e~~~~~ar~~~~~a~e~~~~lq~~~~e~~aqk~d~E~ritt~e~rfl-naq------re~t~~~d~nd   94 (916)
T KOG0249|consen   22 QLAPLTTRVPELEHSLPEARKDLIKAEEMNTKLQRDIREAMAQKEDMEERITTLEKRFL-NAQ------RESTSIHDLND   94 (916)
T ss_pred             ccCCCcCCcHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhHHhhhcccccccchHHHHHH-hcc------CCCCCcccchH
Confidence            34445588888877777666666555544443333333333333333344444444442 222      2222222  67


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006565          266 EKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRS  301 (640)
Q Consensus       266 ~kE~kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~  301 (640)
                      .+++.+....+.+-..+.+..+++..|.-++.++..
T Consensus        95 klE~~Lankda~lrq~eekn~slqerLelaE~~l~q  130 (916)
T KOG0249|consen   95 KLENELANKDADLRQNEEKNRSLQERLELAEPKLQQ  130 (916)
T ss_pred             HHHHHHhCcchhhchhHHhhhhhhHHHHHhhHhhHh
Confidence            778888888888888888888888888666665544

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=94.69  E-value=7.4  Score=41.74  Aligned_cols=196  Identities=14%  Similarity=0.174  Sum_probs=125.5

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 006565          257 REEFSSTLAEKEEEMKEKATKI-------EHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQS  329 (640)
Q Consensus       257 ree~~s~le~kE~kie~~k~ei-------~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies  329 (640)
                      .-++..++..+.++-..+.+++       ...|-++.+++..|..+...-..-.+-...++.-+..-.+.--.+..+   
T Consensus        58 i~qy~~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdk---  134 (305)
T PF14915_consen   58 IFQYNGQLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDK---  134 (305)
T ss_pred             HHHHhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHH---
Confidence            4444444444444444444444       334445555555555444433333332222222222222222233332   


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 006565          330 FEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQR  409 (640)
Q Consensus       330 ~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~kea~e~~~~areead~aq~E~~elQr~~~qrlaeIerl~~  409 (640)
                      ....+..|......|.+++.....+|.++...|-.+-..+.+..-.....+-++..++-.+.++..-.---...+...-.
T Consensus       135 mn~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~  214 (305)
T PF14915_consen  135 MNSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIG  214 (305)
T ss_pred             hcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            33456678888888889999999999998888888888888888888888888888888888877777544555788878


Q ss_pred             HHHHHHHHHHHhHHHHhhhcHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 006565          410 QIESLERQKTDLTNEVNRIRESELEALSK-VALLEARVEEREKEIESL  456 (640)
Q Consensus       410 qIE~lEre~e~Le~E~~~l~~sEl~al~k-v~~lE~~vee~e~eiE~L  456 (640)
                      ..+.++.++-.++.+-.=|+ ..++...+ ..-.+..|-.++..+...
T Consensus       215 Kqes~eERL~QlqsEN~LLr-QQLddA~~K~~~kek~ViniQ~~f~d~  261 (305)
T PF14915_consen  215 KQESLEERLSQLQSENMLLR-QQLDDAHNKADNKEKTVINIQDQFQDI  261 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            88999999999999888888 77776666 666666666666555444

>TIGR03017 EpsF chain length determinant protein EpsF

Probab=94.58  E-value=6.6  Score=43.55  Aligned_cols=31  Identities=6%  Similarity=0.244  Sum_probs=25.4

Q ss_pred             hhcchHHhHHhhHHhHHhhhhhhHHHHHHHH
Q 006565          142 ENISLREKSSSLSKTVDSLKNEISDWKRKYD  172 (640)
Q Consensus       142 k~~s~ee~~~~l~k~le~~~~e~~ew~~kYe  172 (640)
                      -..-++++...+.++|+.++..-..|++++-
T Consensus       172 ~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~  202 (444)
T TIGR03017       172 AALWFVQQIAALREDLARAQSKLSAYQQEKG  202 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            3556788888888999999999888988863

Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=94.52  E-value=6.4  Score=40.26  Aligned_cols=106  Identities=23%  Similarity=0.210  Sum_probs=58.8

Q ss_pred             hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          252 REDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFE  331 (640)
Q Consensus       252 r~~a~ree~~s~le~kE~kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e  331 (640)
                      ..||+......++...+.+...+...+.........+..=..+++..|.....+          ...........+....
T Consensus         6 d~d~~~~~~~~e~~~~E~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e----------~~~~~~~~~~~i~~~~   75 (207)
T PF05010_consen    6 DLDAAIKKVQEEVAEKEEEEQELKKKYEELHKENQEMRKIMEEYEKTIAQMIEE----------KQKQKELSEAEIQKLL   75 (207)
T ss_pred             hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH----------HHhhHHhHHHHHHHHH
Confidence            355666666666666666666666666666666666666666666555554444          1122333344455555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          332 REARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEK  367 (640)
Q Consensus       332 ~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEe  367 (640)
                      .+...+..++..++.-|.....+|+....-+.....
T Consensus        76 ~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~  111 (207)
T PF05010_consen   76 KERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKK  111 (207)
T ss_pred             hhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555555555555555555544444433

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=94.41  E-value=13  Score=43.40  Aligned_cols=37  Identities=19%  Similarity=0.290  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          351 EFERFEEVQERCKVAEKEAKKATELADRERAEAAAAR  387 (640)
Q Consensus       351 e~er~ee~~~rleeaEee~kea~e~~~~areead~aq  387 (640)
                      +...++-.+.++..++.+|......+..+......++
T Consensus       240 im~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~  276 (629)
T KOG0963|consen  240 IMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAK  276 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcc
Confidence            3456666666677777777777777777776666553

>KOG0243 consensus Kinesin-like protein [Cytoskeleton]

Probab=94.36  E-value=18  Score=44.77  Aligned_cols=34  Identities=18%  Similarity=0.206  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          315 ELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKY  348 (640)
Q Consensus       315 ~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl  348 (640)
                      .|..++..++.++++...++..++.++.++...+
T Consensus       480 ~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l  513 (1041)
T KOG0243|consen  480 LLKEEKEKLKSKLQNKNKELESLKEELQQAKATL  513 (1041)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666666666666666666666666665553

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=94.31  E-value=6.7  Score=39.65  Aligned_cols=23  Identities=39%  Similarity=0.719  Sum_probs=12.4

Q ss_pred             HHHHH-HHHHHHHHHHHHHHHHHH
Q 006565          434 EALSK-VALLEARVEEREKEIESL  456 (640)
Q Consensus       434 ~al~k-v~~lE~~vee~e~eiE~L  456 (640)
                      +.+.. +..++..+++-+..+..|
T Consensus       121 eeL~~kL~~~~~~l~~~~~ki~~L  144 (194)
T PF15619_consen  121 EELQRKLSQLEQKLQEKEKKIQEL  144 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344 555555555555555555

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=93.87  E-value=4.9  Score=41.96  Aligned_cols=116  Identities=24%  Similarity=0.304  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          281 AEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQE  360 (640)
Q Consensus       281 aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~  360 (640)
                      +++.-..+...|..++.+.+.....+......+..|..+...+..+...++.+...+...+..|........+.-..+..
T Consensus         3 aEr~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~   82 (246)
T PF00769_consen    3 AEREKQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQ   82 (246)
T ss_dssp             HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444445555555555555555566666666666666666666666666666666666666665544444444444555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 006565          361 RCKVAEKEAKKATELADRERAEAAAARKGKSEFENL  396 (640)
Q Consensus       361 rleeaEee~kea~e~~~~areead~aq~E~~elQr~  396 (640)
                      ++.+++..+..+.........++...+.++..++..
T Consensus        83 e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~  118 (246)
T PF00769_consen   83 ELREAEAEIARLEEESERKEEEAEELQEELEEARED  118 (246)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555555555555555555544444443

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=93.58  E-value=9.3  Score=40.59  Aligned_cols=109  Identities=15%  Similarity=0.247  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHHhhhHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhHHHH
Q 006565          233 AALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLEL-------KAAESKMRSYEVE  305 (640)
Q Consensus       233 kAeek~a~L~er~~~~~q~r~~a~ree~~s~le~kE~kie~~k~ei~~aEq~la~~q~eL-------~e~e~kIk~~e~e  305 (640)
                      +|..++..++.+.+ .+.-.    +.+-+=+++-+++-++..+.+.....-+++.+..+.       ..++..-..+.-+
T Consensus        15 ~aLqKIqelE~Qld-kLkKE----~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshd   89 (307)
T PF10481_consen   15 RALQKIQELEQQLD-KLKKE----RQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHD   89 (307)
T ss_pred             HHHHHHHHHHHHHH-HHHHH----HHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHH
Confidence            34455555555554 44444    455555566666666666666666666666665554       4444444455555


Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          306 ISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQ  346 (640)
Q Consensus       306 i~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~e  346 (640)
                      +...+.++.+|+-.+.+.+..++.++.++.-++-++.+...
T Consensus        90 lq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~  130 (307)
T PF10481_consen   90 LQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQ  130 (307)
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56666666666666666666555555555555555555433

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=93.56  E-value=18  Score=41.97  Aligned_cols=26  Identities=27%  Similarity=0.363  Sum_probs=11.9

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHH
Q 006565          257 REEFSSTLAEKEEEMKEKATKIEHAE  282 (640)
Q Consensus       257 ree~~s~le~kE~kie~~k~ei~~aE  282 (640)
                      .+....+++.++.+++.++.+...+-
T Consensus       296 l~~l~~Eie~kEeE~e~lq~~~d~Lk  321 (581)
T KOG0995|consen  296 LEMLKSEIEEKEEEIEKLQKENDELK  321 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444544444444444433

>PF12795 MscS_porin: Mechanosensitive ion channel porin domain

Probab=93.20  E-value=12  Score=38.67  Aligned_cols=49  Identities=10%  Similarity=0.267  Sum_probs=32.9

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 006565          254 DVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYE  303 (640)
Q Consensus       254 ~a~ree~~s~le~kE~kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e  303 (640)
                      .++...+..++.|++ +++.....+....+.+...=..+..+..+|..+.
T Consensus        17 ~~~i~~l~~al~~L~-~~~~~~~~~~~~~~~i~~aP~~~~~l~~~l~~l~   65 (240)
T PF12795_consen   17 KALIQDLQQALSFLD-EIKKQKKRAAEYQKQIDQAPKEIRELQKELEALK   65 (240)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Confidence            356777888888888 7777777777666666666555555555555553

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=93.17  E-value=15  Score=39.79  Aligned_cols=13  Identities=23%  Similarity=0.401  Sum_probs=5.4

Q ss_pred             HHHhhHHHHHHHH
Q 006565          489 AERLSLEVQSAQA  501 (640)
Q Consensus       489 leal~~e~~~lqs  501 (640)
                      +..++..++.++.
T Consensus       278 v~~Lk~~~~~Le~  290 (325)
T PF08317_consen  278 VKRLKAKVDALEK  290 (325)
T ss_pred             HHHHHHHHHHHHH
Confidence            3344444444443

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=93.08  E-value=31  Score=43.22  Aligned_cols=34  Identities=15%  Similarity=0.221  Sum_probs=14.3

Q ss_pred             HHHhHHhhhcchHHhHHhhHHhHHhhhhhhHHHH
Q 006565          135 RINNLQGENISLREKSSSLSKTVDSLKNEISDWK  168 (640)
Q Consensus       135 ~~~~l~~k~~s~ee~~~~l~k~le~~~~e~~ew~  168 (640)
                      ++..|......+...+..+...+...+.+..++.
T Consensus       448 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  481 (1047)
T PRK10246        448 AIQNVTQEQTQRNAALNEMRQRYKEKTQQLADVK  481 (1047)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444444444444444444433333

>PRK10869 recombination and repair protein; Provisional

Probab=93.01  E-value=22  Score=41.36  Aligned_cols=43  Identities=16%  Similarity=0.252  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHH
Q 006565          281 AEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAV  323 (640)
Q Consensus       281 aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~  323 (640)
                      .-..+....-.+.+....++.+-..+..-..++..+++++..+
T Consensus       266 ~~~~l~~~~~~l~~~~~~l~~~~~~~~~dp~~l~~ie~Rl~~l  308 (553)
T PRK10869        266 VLDMLEEALIQIQEASDELRHYLDRLDLDPNRLAELEQRLSKQ  308 (553)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Confidence            3333333333444444444444444444444444444444333

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.00  E-value=14  Score=39.15  Aligned_cols=162  Identities=15%  Similarity=0.186  Sum_probs=80.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 006565          222 RKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESK---  298 (640)
Q Consensus       222 rky~~L~~QAKkAeek~a~L~er~~~~~q~r~~a~ree~~s~le~kE~kie~~k~ei~~aEq~la~~q~eL~e~e~k---  298 (640)
                      .+|..+....+.++.++..|..++. .++.+    +......+.....+++.+..+|...+..|...+.-|..----   
T Consensus        38 s~l~~~~~~~~~~q~ei~~L~~qi~-~~~~k----~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~  112 (265)
T COG3883          38 SKLSELQKEKKNIQNEIESLDNQIE-EIQSK----IDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQV  112 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444443 44444    444444444444444444444444444444443333111000   


Q ss_pred             ---HhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          299 ---MRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATEL  375 (640)
Q Consensus       299 ---Ik~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~kea~e~  375 (640)
                         -..| -++=..-..+..+-+|...+..-+.....-+...+.+...|+.+-......++++..-..+++.....+...
T Consensus       113 nG~~t~Y-idvil~SkSfsD~IsRvtAi~~iv~aDk~ile~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~q  191 (265)
T COG3883         113 NGTATSY-IDVILNSKSFSDLISRVTAISVIVDADKKILEQQKEDKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQ  191 (265)
T ss_pred             cCChhHH-HHHHHccCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               0001 112223345666677777777777777777777777777776666666666666665555555555554444


Q ss_pred             HHHHHHHHHHHHhh
Q 006565          376 ADRERAEAAAARKG  389 (640)
Q Consensus       376 ~~~areead~aq~E  389 (640)
                      .......+..+..+
T Consensus       192 k~e~~~l~~~~aa~  205 (265)
T COG3883         192 KAEKNALIAALAAK  205 (265)
T ss_pred             HHHHHHHHHHHHHH
Confidence            44444444333333

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=92.83  E-value=8.7  Score=40.09  Aligned_cols=117  Identities=22%  Similarity=0.328  Sum_probs=72.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          270 EMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYK  349 (640)
Q Consensus       270 kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~  349 (640)
                      +..++...+.+.+......+..|...+..+..++.+...++.....|..+-..+......+.........+...|..++.
T Consensus         6 ~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~   85 (246)
T PF00769_consen    6 EKQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELR   85 (246)
T ss_dssp             HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556667777778888888888888888888888888888888888888888888888888888888888888866666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          350 SEFERFEEVQERCKVAEKEAKKATELADRERAEAAAA  386 (640)
Q Consensus       350 se~er~ee~~~rleeaEee~kea~e~~~~areead~a  386 (640)
                      ........+.......+.+.......+..++.....+
T Consensus        86 e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~a  122 (246)
T PF00769_consen   86 EAEAEIARLEEESERKEEEAEELQEELEEAREDEEEA  122 (246)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6665555555544444445444444444444443333

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=92.53  E-value=34  Score=42.28  Aligned_cols=42  Identities=14%  Similarity=0.232  Sum_probs=24.4

Q ss_pred             HhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          185 VCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGV  226 (640)
Q Consensus       185 ~AAGIsklK~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~  226 (640)
                      |--....+..+-++++..|..-.+-|.+.+|.+...++-.+.
T Consensus       179 ~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~  220 (1072)
T KOG0979|consen  179 YHIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVER  220 (1072)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            444455556666666666666666666666666555554443

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=92.53  E-value=7.3  Score=40.42  Aligned_cols=73  Identities=18%  Similarity=0.190  Sum_probs=33.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHH
Q 006565          365 AEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSK  438 (640)
Q Consensus       365 aEee~kea~e~~~~areead~aq~E~~elQr~~~qrlaeIerl~~qIE~lEre~e~Le~E~~~l~~sEl~al~k  438 (640)
                      +..............+...+....+...+...+-+..++++.++..+..+++.+.....++..+. .+++.+..
T Consensus        26 ~~~~~~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~-~qi~~~~~   98 (251)
T PF11932_consen   26 AQQVQQQWVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLE-QQIEQIEE   98 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            33333333333344444444444444444444444444444444444444444444444444444 44444443

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=92.45  E-value=2  Score=43.03  Aligned_cols=85  Identities=24%  Similarity=0.391  Sum_probs=28.9

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          260 FSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQ  339 (640)
Q Consensus       260 ~~s~le~kE~kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~  339 (640)
                      +...+..+..++..+..++......+..++.++..+..+|+.+..++.....-+..|.+.+.++.-.....+.++..|+.
T Consensus        93 l~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~  172 (194)
T PF08614_consen   93 LAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEE  172 (194)
T ss_dssp             ---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444444444444444444444444444444444444444444444444444444444444444


Q ss_pred             HHHHH
Q 006565          340 DKVYL  344 (640)
Q Consensus       340 ei~~L  344 (640)
                      |-..|
T Consensus       173 En~~L  177 (194)
T PF08614_consen  173 ENREL  177 (194)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44444

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=92.43  E-value=3.8  Score=42.49  Aligned_cols=62  Identities=31%  Similarity=0.418  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHHhHHHHhhhcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 006565          410 QIESLERQKTDLTNEVNRIRESELEALSK-VALLEARVEEREKEIESLLESNNEQRASTVKKLED  473 (640)
Q Consensus       410 qIE~lEre~e~Le~E~~~l~~sEl~al~k-v~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~  473 (640)
                      .++....+...+..++..+. .|++.+.. ...++..|..++.++.+| +..+..+..+-..+.-
T Consensus        43 ~id~~~~e~~~L~~e~~~l~-~e~e~L~~~~~~l~~~v~~q~~el~~L-~~qi~~~~~~~~~l~p  105 (251)
T PF11932_consen   43 RIDQWDDEKQELLAEYRQLE-REIENLEVYNEQLERQVASQEQELASL-EQQIEQIEETRQELVP  105 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence            33444444444444444444 44444444 555555555555555555 4444444444444443

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>COG4717 Uncharacterized conserved protein [Function unknown]

Probab=92.38  E-value=33  Score=41.81  Aligned_cols=93  Identities=14%  Similarity=0.151  Sum_probs=67.5

Q ss_pred             hhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHhhHHHHHhhHHHHHHH
Q 006565          250 QQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAES--------------KMRSYEVEISSQKLETKE  315 (640)
Q Consensus       250 q~r~~a~ree~~s~le~kE~kie~~k~ei~~aEq~la~~q~eL~e~e~--------------kIk~~e~ei~~le~el~~  315 (640)
                      +.|.-+-+.++.+++..++..|+.+...+.+++...+..+.+.++.-.              -|=..-.++..+.+...+
T Consensus       552 ~~r~rq~~~~~r~~ld~leaa~e~lE~r~~~~e~~~~e~~se~e~~l~~l~l~~el~~~~~~d~ls~mkd~~~~~q~~~E  631 (984)
T COG4717         552 QSRIRQHWQQLRKALDQLEAAYEALEGRFAAAEAAMAEWQSEWEEALDELGLSRELSPEQQLDILSTMKDLKKLMQKKAE  631 (984)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccCCccCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445567777888889999999999999999988888776633322              222333455666777888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          316 LSEKLEAVNAKAQSFEREARIMEQDKV  342 (640)
Q Consensus       316 L~ekle~~~~eies~e~el~~L~~ei~  342 (640)
                      |+.+...+..+...|+.....+-..+.
T Consensus       632 L~~q~~~L~ee~~af~~~v~~l~~~~e  658 (984)
T COG4717         632 LTHQVARLREEQAAFEERVEGLLAVLE  658 (984)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            888888888888888888888776653

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=92.33  E-value=2.7  Score=46.31  Aligned_cols=131  Identities=18%  Similarity=0.286  Sum_probs=74.2

Q ss_pred             hhhhhHHHHHHHHHHHhHhhHhhHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          160 LKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAA  239 (640)
Q Consensus       160 ~~~e~~ew~~kYe~~~~~~k~~~~~~AAGIsklK~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAeek~a  239 (640)
                      +.-...+|+--+|-+.-+.|-     .     .+.-.+.=...|++++.....+...+.+.+.+++-+..+..++.+++.
T Consensus       189 s~vd~~eWklEvERV~PqLKv-----~-----~~~d~kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~  258 (359)
T PF10498_consen  189 SKVDPAEWKLEVERVLPQLKV-----T-----IRADAKDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIE  258 (359)
T ss_pred             ccCCHHHHHHHHHHHhhhhee-----e-----ccCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            344566777777776665531     0     112235555667777777777777777777777777777777777777


Q ss_pred             HHHHhhhHHHhhhHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 006565          240 IVQERTSKEMQQREDVLREEFSST---LAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEV  304 (640)
Q Consensus       240 ~L~er~~~~~q~r~~a~ree~~s~---le~kE~kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~  304 (640)
                      +-+..+|.+++.-    ..++...   +.....+|..+..-+...-..|+....+|.....+|....+
T Consensus       259 sREk~iN~qle~l----~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~  322 (359)
T PF10498_consen  259 SREKYINNQLEPL----IQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGS  322 (359)
T ss_pred             HHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            7766666443333    3333322   44444455555555555555555555555444444444433

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=91.75  E-value=22  Score=38.50  Aligned_cols=149  Identities=21%  Similarity=0.302  Sum_probs=94.8

Q ss_pred             hHHHHHhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          301 SYEVEISSQKLETKELSEKLEAVNAKA-QSFEREARIMEQDKVYLEQKYKSEFER-FEEVQERCKVAEKEAKKATELADR  378 (640)
Q Consensus       301 ~~e~ei~~le~el~~L~ekle~~~~ei-es~e~el~~L~~ei~~L~ekl~se~er-~ee~~~rleeaEee~kea~e~~~~  378 (640)
                      .+-..|..++.+-..|..+++.-+..+ ..+.+++..|.+++..|+..++.+.+- +..+...|..++.       +...
T Consensus        81 ~LlKkl~~l~keKe~L~~~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~-------e~~~  153 (310)
T PF09755_consen   81 TLLKKLQQLKKEKETLALKYEQEEEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEK-------EKSA  153 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-------HHHH
Confidence            344556666666666666666555444 457788999999999998888876644 4555555555533       3445


Q ss_pred             HHHHHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHhhh-----cHHHHH--HHHH--HHHHHHHHHH
Q 006565          379 ERAEAAAARKGKSEFENLA-MERMAVIERVQRQIESLERQKTDLTNEVNRI-----RESELE--ALSK--VALLEARVEE  448 (640)
Q Consensus       379 areead~aq~E~~elQr~~-~qrlaeIerl~~qIE~lEre~e~Le~E~~~l-----~~sEl~--al~k--v~~lE~~vee  448 (640)
                      .+..++..+.++..+.+.+ .+-+.-+.+|..+++.|..++-.|+..+..-     .+....  ....  +..+.++|..
T Consensus       154 ~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~~~s~~~s~~d~~~~~~~~Dt~e~~~shI~~  233 (310)
T PF09755_consen  154 KQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLEQPVSAPPSPRDTVNVSEENDTAERLSSHIRS  233 (310)
T ss_pred             hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCcchHHhhcccCCchhHHHHHHHH
Confidence            5666777788888887777 5566667788888888888888777776641     111111  1111  4555666666


Q ss_pred             HHHHHHHH
Q 006565          449 REKEIESL  456 (640)
Q Consensus       449 ~e~eiE~L  456 (640)
                      +..++..|
T Consensus       234 Lr~EV~RL  241 (310)
T PF09755_consen  234 LRQEVSRL  241 (310)
T ss_pred             HHHHHHHH
Confidence            66655555

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=91.74  E-value=16  Score=36.97  Aligned_cols=51  Identities=12%  Similarity=0.107  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHH
Q 006565          270 EMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKL  320 (640)
Q Consensus       270 kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekl  320 (640)
                      -|..++.++..+..........+.+...+.+.+..-+..+..+...|...+
T Consensus        28 lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L   78 (201)
T PF13851_consen   28 LIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQL   78 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            556666666666666666666666666555555555555555555554443

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=91.73  E-value=25  Score=42.36  Aligned_cols=52  Identities=13%  Similarity=0.238  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          283 QCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREA  334 (640)
Q Consensus       283 q~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el  334 (640)
                      +++..++......-.++..+..++..+......|.++++.+..+.+.+.+++
T Consensus       565 ~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~  616 (717)
T PF10168_consen  565 RRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRV  616 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333444444444444333333333333333333333333

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=91.65  E-value=6.6  Score=36.89  Aligned_cols=40  Identities=20%  Similarity=0.263  Sum_probs=18.4

Q ss_pred             HHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          294 AAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFERE  333 (640)
Q Consensus       294 e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~e  333 (640)
                      ...+.|+.++.++..++.++..|......+..++..+..+
T Consensus        20 ~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~   59 (120)
T PF12325_consen   20 RLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEE   59 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444444444444443333

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=91.63  E-value=7.5  Score=36.53  Aligned_cols=35  Identities=14%  Similarity=0.162  Sum_probs=14.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 006565          465 ASTVKKLEDLLESERRSRAAANAMAERLSLEVQSA  499 (640)
Q Consensus       465 ~~~l~~le~~le~~re~l~e~nrrleal~~e~~~l  499 (640)
                      ...+..++.......+-+.+....++.|++-+.-+
T Consensus        74 ~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~Dl  108 (120)
T PF12325_consen   74 EQELEELQQRYQTLLELLGEKSEEVEELRADVQDL  108 (120)
T ss_pred             HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            33333333333333333444444444444433333

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=91.52  E-value=3.7  Score=35.22  Aligned_cols=67  Identities=21%  Similarity=0.343  Sum_probs=54.6

Q ss_pred             HHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          291 ELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEE  357 (640)
Q Consensus       291 eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee  357 (640)
                      .|..++.+|......|..++.++..|..+...+......+..+...|+++.......+.+.-+++++
T Consensus         5 ~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~~   71 (72)
T PF06005_consen    5 LLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKLEE   71 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            4678888888888889999999999988888888888888888888888887777777777777654

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=91.31  E-value=10  Score=44.18  Aligned_cols=44  Identities=25%  Similarity=0.447  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHH
Q 006565          394 ENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSK  438 (640)
Q Consensus       394 Qr~~~qrlaeIerl~~qIE~lEre~e~Le~E~~~l~~sEl~al~k  438 (640)
                      .+.+..+...+++++.++..|++.++.+.+++..|+ ++++.+..
T Consensus       421 ~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~-~~l~~~~r  464 (652)
T COG2433         421 EKRIKKLEETVERLEEENSELKRELEELKREIEKLE-SELERFRR  464 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            334444444455555555555555555554444444 44444433

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=91.27  E-value=4.1  Score=43.96  Aligned_cols=35  Identities=17%  Similarity=0.101  Sum_probs=16.0

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006565          387 RKGKSEFENLAMERMAVIERVQRQIESLERQKTDL  421 (640)
Q Consensus       387 q~E~~elQr~~~qrlaeIerl~~qIE~lEre~e~L  421 (640)
                      -.+....+...++...+...+.++++....+++.|
T Consensus        98 ~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L  132 (314)
T PF04111_consen   98 WREYNELQLELIEFQEERDSLKNQYEYASNQLDRL  132 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444444444444444444

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=91.07  E-value=4.2  Score=43.92  Aligned_cols=25  Identities=16%  Similarity=0.218  Sum_probs=13.7

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHH
Q 006565          483 AAANAMAERLSLEVQSAQAKLDEMQ  507 (640)
Q Consensus       483 ~e~nrrleal~~e~~~lqs~id~Le  507 (640)
                      .+.....+++.+++..+...++.|+
T Consensus       109 ~~~~~e~~sl~~q~~~~~~~L~~L~  133 (314)
T PF04111_consen  109 IEFQEERDSLKNQYEYASNQLDRLR  133 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333445555566666666666654

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=91.01  E-value=4.6  Score=40.38  Aligned_cols=86  Identities=19%  Similarity=0.234  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          270 EMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYK  349 (640)
Q Consensus       270 kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~  349 (640)
                      ++..+...-....+.+..++..+..++.++......+..+..++..|..+...+...+....+-+..+.+|+..|.-.+.
T Consensus        82 ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~  161 (194)
T PF08614_consen   82 ELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLN  161 (194)
T ss_dssp             --------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444555555555555555555555555555555555555555555555544444444444444444443


Q ss_pred             HHHHHH
Q 006565          350 SEFERF  355 (640)
Q Consensus       350 se~er~  355 (640)
                      ...+++
T Consensus       162 ~~e~k~  167 (194)
T PF08614_consen  162 MLEEKL  167 (194)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            333333

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=90.84  E-value=20  Score=36.25  Aligned_cols=130  Identities=15%  Similarity=0.215  Sum_probs=77.1

Q ss_pred             hHHHHHHHhhHHhHHHHHhhHHHHHHHHhHHhhhcchHHhHHhhHHhHHhhhhhhHHHHHHHHHHHhHhhHhhHHHhhhH
Q 006565          110 YKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEI  189 (640)
Q Consensus       110 ~~~~~~k~~e~~i~d~kk~~~~~~~~~~~l~~k~~s~ee~~~~l~k~le~~~~e~~ew~~kYe~~~~~~k~~~~~~AAGI  189 (640)
                      ....+....++|.-=+...+.+....+..+..-+-..--.--.+..+++.....+.+|..+=..++..-   .+++|-..
T Consensus        13 ~~~~~ld~~EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g---~edLAr~a   89 (221)
T PF04012_consen   13 NINELLDKAEDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAG---REDLAREA   89 (221)
T ss_pred             HHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CHHHHHHH
Confidence            334444555566644455555555555555555555555556677888888899999999988888744   35555444


Q ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006565          190 EVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERT  245 (640)
Q Consensus       190 sklK~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAeek~a~L~er~  245 (640)
                      .   .++...+..+.....+++.+...+...+.++..+..+-.....+...|..+.
T Consensus        90 l---~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~  142 (221)
T PF04012_consen   90 L---QRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARE  142 (221)
T ss_pred             H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4   4555555555555555555555555555555555554444444444444443

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=90.73  E-value=21  Score=36.44  Aligned_cols=76  Identities=18%  Similarity=0.176  Sum_probs=27.0

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          306 ISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERA  381 (640)
Q Consensus       306 i~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~kea~e~~~~are  381 (640)
                      |+.++.++++.......--++|.++...++.+.................+.+-...++..+.++.+...+++..+.
T Consensus        12 IsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLre   87 (202)
T PF06818_consen   12 ISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLRE   87 (202)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhh
Confidence            3333333333333333333333333333333333333333333333333333333333333333333333333333

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>PF15254 CCDC14: Coiled-coil domain-containing protein 14

Probab=90.36  E-value=47  Score=40.02  Aligned_cols=151  Identities=15%  Similarity=0.142  Sum_probs=95.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          271 MKEKATKIEHAEQCLTTLRLELKAAESK------------MRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIME  338 (640)
Q Consensus       271 ie~~k~ei~~aEq~la~~q~eL~e~e~k------------Ik~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~  338 (640)
                      ++-++.+..++..++..++..|.+.+.-            +-.+.+--..++.++.++....+.+..+-+.+-+-+...+
T Consensus       389 ~QplrsENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~  468 (861)
T PF15254_consen  389 MQPLRSENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQK  468 (861)
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHH
Confidence            3445555555555555555555443322            2333444556677777777777777777777777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          339 QDKVYLEQKYKSEFERFEEVQERCK----VAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESL  414 (640)
Q Consensus       339 ~ei~~L~ekl~se~er~ee~~~rle----eaEee~kea~e~~~~areead~aq~E~~elQr~~~qrlaeIerl~~qIE~l  414 (640)
                      +|..++..-+..-.+.+.+-...|+    ...-++.+|.-.++..+-.++++.+|..-+---+-||.|+|.||+.-.-.|
T Consensus       469 ~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~L  548 (861)
T PF15254_consen  469 EENKRLRKMFQEKDQELLENKQQFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLRELTRTL  548 (861)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHH
Confidence            7777776655544444444333333    345577777777788888888888888888888888888888885555445


Q ss_pred             HHHHHHh
Q 006565          415 ERQKTDL  421 (640)
Q Consensus       415 Ere~e~L  421 (640)
                      +.-..++
T Consensus       549 Q~Sma~l  555 (861)
T PF15254_consen  549 QNSMAKL  555 (861)
T ss_pred             HHHHHHH
Confidence            4444444

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=90.26  E-value=59  Score=40.78  Aligned_cols=26  Identities=12%  Similarity=0.151  Sum_probs=11.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          463 QRASTVKKLEDLLESERRSRAAANAM  488 (640)
Q Consensus       463 q~~~~l~~le~~le~~re~l~e~nrr  488 (640)
                      .+...+..++..+......+.....+
T Consensus       826 ~l~~~~~~~~~~~~~~~~~~~~~~~~  851 (1047)
T PRK10246        826 QIQQELAQLAQQLRENTTRQGEIRQQ  851 (1047)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444433

>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]

Probab=90.22  E-value=45  Score=39.34  Aligned_cols=100  Identities=24%  Similarity=0.313  Sum_probs=56.5

Q ss_pred             HHHhhhHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhhHHHHHhhHHHHH
Q 006565          241 VQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAES-------KMRSYEVEISSQKLET  313 (640)
Q Consensus       241 L~er~~~~~q~r~~a~ree~~s~le~kE~kie~~k~ei~~aEq~la~~q~eL~e~e~-------kIk~~e~ei~~le~el  313 (640)
                      ++++.. .++..    ++.+.-++..+-...+....+|...|-+|+..+..|+..++       .+..+++.+-.+=-++
T Consensus       109 yQerLa-RLe~d----kesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQqellsrtsLETqKlDLmaev  183 (861)
T KOG1899|consen  109 YQERLA-RLEMD----KESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQELLSRTSLETQKLDLMAEV  183 (861)
T ss_pred             HHHHHH-HHhcc----hhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHHHhhhhHHHHHhHHHHHH
Confidence            455553 44444    55555555555555555555566666666655555544332       2244555555555566


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          314 KELSEKLEAVNAKAQSFEREARIMEQDKVYLE  345 (640)
Q Consensus       314 ~~L~ekle~~~~eies~e~el~~L~~ei~~L~  345 (640)
                      .+|.-++..++.+...++++++-.+..++|+.
T Consensus       184 SeLKLkltalEkeq~e~E~K~R~se~l~qevn  215 (861)
T KOG1899|consen  184 SELKLKLTALEKEQNETEKKLRLSENLMQEVN  215 (861)
T ss_pred             HHhHHHHHHHHHHhhhHHHHHHhHHHHHHHHH
Confidence            66666666666666666666666666666654

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=89.99  E-value=17  Score=40.21  Aligned_cols=105  Identities=22%  Similarity=0.273  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          218 EEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAES  297 (640)
Q Consensus       218 ~Ewkrky~~L~~QAKkAeek~a~L~er~~~~~q~r~~a~ree~~s~le~kE~kie~~k~ei~~aEq~la~~q~eL~e~e~  297 (640)
                      .+||.-++......+.-...+.        .+...++.+..++...++.....-+.+.+.+....+.+...+.+|.+...
T Consensus       216 kDWR~hleqm~~~~~~I~~~~~--------~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~  287 (359)
T PF10498_consen  216 KDWRSHLEQMKQHKKSIESALP--------ETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQE  287 (359)
T ss_pred             chHHHHHHHHHHHHHHHHHhhh--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            3666666655544333322222        33333334555566666666655666666666666666666666666666


Q ss_pred             HHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 006565          298 KMRSYEVEISSQKLETKELSEKLEAVNAKAQSF  330 (640)
Q Consensus       298 kIk~~e~ei~~le~el~~L~ekle~~~~eies~  330 (640)
                      +.+....-+.....++..+.++++.++.+++..
T Consensus       288 ~y~~~s~~V~~~t~~L~~IseeLe~vK~emeer  320 (359)
T PF10498_consen  288 KYKQASEGVSERTRELAEISEELEQVKQEMEER  320 (359)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            666666666666666666666666666666543

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=89.99  E-value=51  Score=39.67  Aligned_cols=103  Identities=22%  Similarity=0.226  Sum_probs=63.6

Q ss_pred             HHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          297 SKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELA  376 (640)
Q Consensus       297 ~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~kea~e~~  376 (640)
                      .+++...+++..+..+|+.|..++.....   .+......+..++..|..++....+...+-.+++..++.++..+...+
T Consensus       359 ~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~---~~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr~l~~~A  435 (717)
T PF09730_consen  359 CKYKVAVSEVIQLKAELKALKSKYNELEE---RYKQEKDRLESEVQNLKEKLMSLEKSSREDQERISELEKELRALSKLA  435 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence            33333334444444444444444443333   333344445556666666666666666666678888888888888888


Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHH
Q 006565          377 DRERAEAAAARKGKSEFENLAMERMA  402 (640)
Q Consensus       377 ~~areead~aq~E~~elQr~~~qrla  402 (640)
                      ......+..||.+.......+.++--
T Consensus       436 ~E~q~~LnsAQDELvtfSEeLAqLYH  461 (717)
T PF09730_consen  436 GESQGSLNSAQDELVTFSEELAQLYH  461 (717)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888888887777755543

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=89.93  E-value=26  Score=36.26  Aligned_cols=22  Identities=32%  Similarity=0.619  Sum_probs=9.0

Q ss_pred             HHHHHHHHHHHHHhHHHHhhhc
Q 006565          408 QRQIESLERQKTDLTNEVNRIR  429 (640)
Q Consensus       408 ~~qIE~lEre~e~Le~E~~~l~  429 (640)
                      ...+...+.++..+...+..++
T Consensus        62 ~~~~~~~~~r~~~l~~~i~~~~   83 (302)
T PF10186_consen   62 KREIEELRERLERLRERIERLR   83 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444443

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PF15294 Leu_zip: Leucine zipper

Probab=89.69  E-value=32  Score=36.83  Aligned_cols=192  Identities=16%  Similarity=0.219  Sum_probs=123.6

Q ss_pred             HHHHHHHHHhhH-----HhHHHHHHHhhHHhHHHHHhhHHHHHHHHhHHhhhcchHHhHHhhHHhHHhhhhhhHHHHHHH
Q 006565           97 MKLLKKQLEDSE-----RYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKY  171 (640)
Q Consensus        97 ~~~~~k~le~~~-----k~~~~~~k~~e~~i~d~kk~~~~~~~~~~~l~~k~~s~ee~~~~l~k~le~~~~e~~ew~~kY  171 (640)
                      .+-|...|+|+.     -.-++++..+--++.+++.+-......+-.|+.-++.+|+|.  |.++.+  +-|..+|-+..
T Consensus        32 ~~EV~~~ldgL~~~v~~~vesEL~N~~htn~lllrql~~qAek~~lkl~~diselEn~e--LLe~i~--~~E~~~~~~~~  107 (278)
T PF15294_consen   32 SDEVTEMLDGLQVVVKSEVESELINTSHTNVLLLRQLFSQAEKWYLKLQTDISELENRE--LLEQIA--EFEKQEFTSSF  107 (278)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHhcccHHHHHHHH--HHHHHH--HHHHhhhcccC
Confidence            345666677776     345789999999999999999999999999999999999985  556665  44556666655


Q ss_pred             HHHHh----HhhHhhHH-----HhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 006565          172 DQVLT----KQKAMEDQ-----VCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKA-AIV  241 (640)
Q Consensus       172 e~~~~----~~k~~~~~-----~AAGIsklK~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAeek~-a~L  241 (640)
                      -.++.    .-.-+.+.     ..-.|..++.--..+-.||.........+-++=..+..++..+..-+.....+- ...
T Consensus       108 ~~~~~~~~~KL~pl~e~g~~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~  187 (278)
T PF15294_consen  108 KPNQETSKPKLEPLNESGGSELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSF  187 (278)
T ss_pred             CccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Confidence            11110    11122233     556788888888888888888888888888888888888877776222222110 012


Q ss_pred             HHhhhHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          242 QERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLEL  292 (640)
Q Consensus       242 ~er~~~~~q~r~~a~ree~~s~le~kE~kie~~k~ei~~aEq~la~~q~eL  292 (640)
                      ..+.-..++...+|+..+|...+..++...+.+...+...-..+-..+..|
T Consensus       188 ~~q~l~dLE~k~a~lK~e~ek~~~d~~~~~k~L~e~L~~~KhelL~~QeqL  238 (278)
T PF15294_consen  188 KAQDLSDLENKMAALKSELEKALQDKESQQKALEETLQSCKHELLRVQEQL  238 (278)
T ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhh
Confidence            222223566666677777776666666555444444444444443344433

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=89.52  E-value=41  Score=37.88  Aligned_cols=24  Identities=13%  Similarity=0.083  Sum_probs=9.9

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHH
Q 006565          480 RSRAAANAMAERLSLEVQSAQAKL  503 (640)
Q Consensus       480 e~l~e~nrrleal~~e~~~lqs~i  503 (640)
                      .++..+...+.....++..++..+
T Consensus       291 ~~l~~~~~~l~~~~~~l~~a~~~l  314 (457)
T TIGR01000       291 QEITDLNQKLLELESKIKSLKEDS  314 (457)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333334444444444444444433

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]

Probab=89.40  E-value=44  Score=40.00  Aligned_cols=44  Identities=23%  Similarity=0.317  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHh
Q 006565          264 LAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEIS  307 (640)
Q Consensus       264 le~kE~kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~  307 (640)
                      ....+....+++.+...++...+.++...-+....-...+..|-
T Consensus        30 ~~e~e~~~~~ar~~~~~a~e~~~~lq~~~~e~~aqk~d~E~rit   73 (916)
T KOG0249|consen   30 VPELEHSLPEARKDLIKAEEMNTKLQRDIREAMAQKEDMEERIT   73 (916)
T ss_pred             cHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhHHhhhcccccccc
Confidence            33344444444444444444444454444444333333333333

>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]

Probab=89.32  E-value=48  Score=38.41  Aligned_cols=115  Identities=13%  Similarity=0.161  Sum_probs=86.5

Q ss_pred             HHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          295 AESKMRSYEVEISSQKLETKELSEKLEAVNAK---AQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKK  371 (640)
Q Consensus       295 ~e~kIk~~e~ei~~le~el~~L~ekle~~~~e---ies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~ke  371 (640)
                      +-..+......-.++..+|..+...|--..++   ...+++++..+......+...+..-...|-.++..++..++.+..
T Consensus       314 l~~~l~k~ke~n~~L~~Eie~V~~sY~l~e~e~~~vr~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~  393 (570)
T COG4477         314 LPDYLEKAKENNEHLKEEIERVKESYRLAETELGSVRKFEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTD  393 (570)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHH
Confidence            33344445555666777777777766544444   456788888888888888888888889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 006565          372 ATELADRERAEAAAARKGKSEFENLAMERMAVIERVQR  409 (640)
Q Consensus       372 a~e~~~~areead~aq~E~~elQr~~~qrlaeIerl~~  409 (640)
                      +.......++.+-..|++-.+++..+...-.++.-..+
T Consensus       394 i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~eikR  431 (570)
T COG4477         394 IEDEQEKVQEHLTSLRKDELEARENLERLKSKLHEIKR  431 (570)
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999888888888877776555544444433

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=89.24  E-value=26  Score=42.19  Aligned_cols=28  Identities=11%  Similarity=0.236  Sum_probs=11.9

Q ss_pred             HhhHHHhhhHHHHhhhhHHHHHHHHHHH
Q 006565          180 AMEDQVCSEIEVLKSRSTAAEARLAAAR  207 (640)
Q Consensus       180 ~~~~~~AAGIsklK~Rkkeae~RL~at~  207 (640)
                      ++-+.+...+..++..+..-..+|....
T Consensus       558 ~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~  585 (717)
T PF10168_consen  558 LAREEIQRRVKLLKQQKEQQLKELQELQ  585 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444443433333

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF12795 MscS_porin: Mechanosensitive ion channel porin domain

Probab=89.07  E-value=30  Score=35.66  Aligned_cols=56  Identities=21%  Similarity=0.273  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 006565          341 KVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENL  396 (640)
Q Consensus       341 i~~L~ekl~se~er~ee~~~rleeaEee~kea~e~~~~areead~aq~E~~elQr~  396 (640)
                      +..|++++......+..+...+..+...+-.+...-..++..+..++....++...
T Consensus        80 ~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~  135 (240)
T PF12795_consen   80 LEELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQ  135 (240)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444444444444444444444444444443333

>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells

Probab=88.98  E-value=32  Score=35.90  Aligned_cols=18  Identities=22%  Similarity=0.224  Sum_probs=6.5

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 006565          327 AQSFEREARIMEQDKVYL  344 (640)
Q Consensus       327 ies~e~el~~L~~ei~~L  344 (640)
                      +..+...+..+...|..+
T Consensus        89 a~~L~~~i~~l~~~i~~l  106 (264)
T PF06008_consen   89 AQDLEQFIQNLQDNIQEL  106 (264)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            333333333333333333

Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex

>PF13870 DUF4201: Domain of unknown function (DUF4201)

Probab=88.95  E-value=25  Score=34.55  Aligned_cols=117  Identities=15%  Similarity=0.238  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------HHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          214 QEEVEEWKRKYGVAVREAKAALEKAAIVQERTS-------KEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLT  286 (640)
Q Consensus       214 kDel~Ewkrky~~L~~QAKkAeek~a~L~er~~-------~~~q~r~~a~ree~~s~le~kE~kie~~k~ei~~aEq~la  286 (640)
                      ..++.+++-++-++..+-.+...++...++-..       .+++..    ..++...++++..++..++..+...-+.++
T Consensus         5 ~~~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~iDFeqLkie----n~~l~~kIeERn~eL~~Lk~~~~~~v~~L~   80 (177)
T PF13870_consen    5 RNEISKLRLKNITLKHQLAKLEEQLRQKEELGEGLHLIDFEQLKIE----NQQLNEKIEERNKELLKLKKKIGKTVQILT   80 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356667777777777777777766555333221       033344    555555566666666666666666666666


Q ss_pred             HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          287 TLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREA  334 (640)
Q Consensus       287 ~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el  334 (640)
                      ..+..+.....++..+..++......+..+...+..+..+...+....
T Consensus        81 h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~  128 (177)
T PF13870_consen   81 HVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQN  128 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666655544444444444444444444444444443333333333

>PRK10869 recombination and repair protein; Provisional

Probab=88.49  E-value=56  Score=38.08  Aligned_cols=42  Identities=12%  Similarity=-0.014  Sum_probs=21.5

Q ss_pred             hHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          188 EIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVR  229 (640)
Q Consensus       188 GIsklK~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L~~  229 (640)
                      |...+......+-.++..+...|..+.....+..+..+.+.-
T Consensus       151 ~~~~~~~~~~~~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~f  192 (553)
T PRK10869        151 NETSLLQEMRAAYQLWHQSCRDLAQHQQQSQERAARKQLLQY  192 (553)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            445555555555555555555555554444444444444433

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=88.49  E-value=4.5  Score=35.29  Aligned_cols=66  Identities=20%  Similarity=0.279  Sum_probs=45.4

Q ss_pred             HHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          292 LKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEE  357 (640)
Q Consensus       292 L~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee  357 (640)
                      |..++.||......|..++-+|.+|.++...+..+++.....-..|.++...|.+....-..++..
T Consensus         6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~   71 (79)
T PRK15422          6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQA   71 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            577888888888889999999999999888888888874444444444444444444443333333

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=88.38  E-value=19  Score=37.47  Aligned_cols=45  Identities=22%  Similarity=0.352  Sum_probs=21.7

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcHHH
Q 006565          387 RKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESE  432 (640)
Q Consensus       387 q~E~~elQr~~~qrlaeIerl~~qIE~lEre~e~Le~E~~~l~~sE  432 (640)
                      ..+.+.+...+-+...+-.+....|.++..++..|..+++.++ .+
T Consensus        59 ~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R-~e  103 (230)
T PF10146_consen   59 NQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELR-KE  103 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence            3333333444433333344444445555555555555666666 44

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>PF06705 SF-assemblin: SF-assemblin/beta giardin

Probab=88.08  E-value=35  Score=35.31  Aligned_cols=68  Identities=13%  Similarity=0.304  Sum_probs=51.5

Q ss_pred             HHHHHHhhHHhHHH-HHhhHHHHHHHHhHHhhhcchHHhHHhhHHhHHhhhhhhHH-HHHHHHHHHhHhh
Q 006565          112 SEYLKRYDDAINDK-KKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISD-WKRKYDQVLTKQK  179 (640)
Q Consensus       112 ~~~~k~~e~~i~d~-kk~~~~~~~~~~~l~~k~~s~ee~~~~l~k~le~~~~e~~e-w~~kYe~~~~~~k  179 (640)
                      .-++.-++..|+++ .++...+......+...+.+|.++|..|+..+..-+..... |-..+....++-.
T Consensus        62 ~~lq~~~e~~i~~~~~~v~~~~~~~~~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~  131 (247)
T PF06705_consen   62 KKLQSKFEEQINNMQERVENQISEKQEQLQSRLDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELN  131 (247)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            34667789999999 89999999999999999999999999999988765554433 4333333333333

>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana

Probab=87.86  E-value=18  Score=36.44  Aligned_cols=82  Identities=21%  Similarity=0.283  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          270 EMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYK  349 (640)
Q Consensus       270 kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~  349 (640)
                      .......+...+++++.....+...+++.|..++.++..++.+...+....+....++..++..+..+.+++...+.+|.
T Consensus       104 ~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~  183 (190)
T PF05266_consen  104 DQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQ  183 (190)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444555555666666666677888888888888888888888888888888888888888888888888888877666


Q ss_pred             HH
Q 006565          350 SE  351 (640)
Q Consensus       350 se  351 (640)
                      +.
T Consensus       184 ~~  185 (190)
T PF05266_consen  184 SV  185 (190)
T ss_pred             HH
Confidence            54

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=87.66  E-value=8.9  Score=39.69  Aligned_cols=81  Identities=17%  Similarity=0.205  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          284 CLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCK  363 (640)
Q Consensus       284 ~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rle  363 (640)
                      .+..++..+.+...++.....+...+-.++..|+.+++..+.++.+++.+...|....+.+..++.....+|+++...++
T Consensus       129 ~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~E  208 (290)
T COG4026         129 EYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVE  208 (290)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccccc
Confidence            44466777788888888888888888888888888888888888888888887777777776666665555555555443


Q ss_pred             H
Q 006565          364 V  364 (640)
Q Consensus       364 e  364 (640)
                      -
T Consensus       209 l  209 (290)
T COG4026         209 L  209 (290)
T ss_pred             c
Confidence            3

>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function

Probab=87.62  E-value=48  Score=36.35  Aligned_cols=21  Identities=14%  Similarity=0.098  Sum_probs=8.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 006565          359 QERCKVAEKEAKKATELADRE  379 (640)
Q Consensus       359 ~~rleeaEee~kea~e~~~~a  379 (640)
                      +..++++..+|.+..++....
T Consensus       147 qlqL~~l~~e~~Ekeeesq~L  167 (401)
T PF06785_consen  147 QLQLDALQQECGEKEEESQTL  167 (401)
T ss_pred             HHhHHHHHHHHhHhHHHHHHH
Confidence            344444444444444444333

>PF15066 CAGE1: Cancer-associated gene protein 1 family

Probab=87.17  E-value=61  Score=37.02  Aligned_cols=103  Identities=18%  Similarity=0.244  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcHHH
Q 006565          353 ERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESE  432 (640)
Q Consensus       353 er~ee~~~rleeaEee~kea~e~~~~areead~aq~E~~elQr~~~qrlaeIerl~~qIE~lEre~e~Le~E~~~l~~sE  432 (640)
                      ..+.-+.+-+.+.++.+.+-+.+-+..+-++.........+|..++.-..+-.+.-.+.-.+.+-+-.-+.++.+|. ..
T Consensus       390 k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksvsqclEmdk~LskKeeeverLQ-~l  468 (527)
T PF15066_consen  390 KTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSVSQCLEMDKTLSKKEEEVERLQ-QL  468 (527)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHHHHHHH-HH
Confidence            44444555566666666666666666666666666666666666643333233333444444444444444444444 33


Q ss_pred             HHHHHH-----HHHHHHHHHHHHHHHHHH
Q 006565          433 LEALSK-----VALLEARVEEREKEIESL  456 (640)
Q Consensus       433 l~al~k-----v~~lE~~vee~e~eiE~L  456 (640)
                      .-.+++     +..|...-+.++.++=.|
T Consensus       469 kgelEkat~SALdlLkrEKe~~EqefLsl  497 (527)
T PF15066_consen  469 KGELEKATTSALDLLKREKETREQEFLSL  497 (527)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222222     555666666666666666

>KOG2037 consensus Guanylate-binding protein [General function prediction only]

Probab=86.94  E-value=0.99  Score=52.12  Aligned_cols=350  Identities=15%  Similarity=0.051  Sum_probs=216.3

Q ss_pred             CchHHHHHH-------HHHHhhhchHHHHHHHHHhHHHhHHHHHHhhhcCchhHHHHHHHHHHhhHHhHHHHHHHhhHHh
Q 006565           50 PGKWQKLAT-------FLQQSSEGPILDLVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAI  122 (640)
Q Consensus        50 ~g~~~k~~~-------~L~~~l~~~~~d~~~~~~~~i~~~~~~l~~~c~s~~~k~~~~~k~le~~~k~~~~~~k~~e~~i  122 (640)
                      |-.|++|+=       .|..++.+||+||.+..++....-....-.  ||.+..|....++.+.....-.-.++...+++
T Consensus       188 ed~l~~l~l~~~~g~~~l~~~~~kp~q~L~~~~~~~s~~~c~~~~~--~~~~~~l~~~l~v~~~~~~el~~~r~~~~~~~  265 (552)
T KOG2037|consen  188 EDDLQHLSLFTEYGRLALAHLFKKPFQDLKFLVRDQSFPFCSYIGE--HGGTKNLDNRLKVNGPQLEELVQLRVHARSCF  265 (552)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHhhhhhhHHHHH--hccccccccceeecccchHHHHHHHHHHHhhc
Confidence            445555554       467889999999999999766665555544  88888888888887776654444566666777


Q ss_pred             HHH-HHhhHHHHHHHHhHHhhhcchHHhHHhhHHhHHhhhhhhHHHHHHHHHHHhHhhHhhHHHhhhHHHHhhhhHHHHH
Q 006565          123 NDK-KKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEA  201 (640)
Q Consensus       123 ~d~-kk~~~~~~~~~~~l~~k~~s~ee~~~~l~k~le~~~~e~~ew~~kYe~~~~~~k~~~~~~AAGIsklK~Rkkeae~  201 (640)
                      .|+ +.+.+.....-+.......++++=+....+||+ +......+..+|+.....-+                      
T Consensus       266 ~d~~c~~~~~~~l~~~~n~~~~~~~~~~~~~~~~ql~-~~~p~~~~q~~l~~~~~~~~----------------------  322 (552)
T KOG2037|consen  266 EDLPCFLNPHPGLAVAENPAFDGKLEDHYNQFMGQLK-VELPNLLLQELLDEKEISGR----------------------  322 (552)
T ss_pred             cCcchhhcCchhhhcccCchhhhhHHHHHHHHHHHHh-hhhhHHhhhhhccccccCcc----------------------
Confidence            788 999999999999999999999999999999999 99999999999998766443                      


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhhHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 006565          202 RLAAAREQALSAQEEVEEWKRKYGVAVREAKAAL--EKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIE  279 (640)
Q Consensus       202 RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAe--ek~a~L~er~~~~~q~r~~a~ree~~s~le~kE~kie~~k~ei~  279 (640)
                               ....-.+.||-++|+.....-..+.  .....++...  .+.                             
T Consensus       323 ---------~~t~~~~~e~fk~y~~i~q~~~g~~lp~pks~l~~~a--ea~-----------------------------  362 (552)
T KOG2037|consen  323 ---------EVTCREMKEYFKAYDKIFQKKLGETLPGPKSMLKANA--EAS-----------------------------  362 (552)
T ss_pred             ---------chhHHHHHHHHHHHHHHhhHhhhhhCcCcccHHHHHH--HHh-----------------------------
Confidence                     3444677889999888776333322  0111111100  000                             


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          280 HAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKEL--SEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEE  357 (640)
Q Consensus       280 ~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L--~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee  357 (640)
                       ...+.+..+..+              ..+.++.+.=  =..-..+..+++....-...+.++....    -...+.+..
T Consensus       363 -~l~~va~ak~~~--------------~~~~Eev~~G~~~~~~s~L~~~~d~~k~~a~~~~~e~rK~----ig~~e~~~~  423 (552)
T KOG2037|consen  363 -SLAAVAAAKDIY--------------GPLMEEVKGGDIYLSPSGLNLKHDKVKELALKYFTEPRKG----IGAEEVCQR  423 (552)
T ss_pred             -hHHHHHHHHHHH--------------hhhhhhhhcCceeecccHHHHHHHHHHHHHHHHHhhhhhh----hcHHHHHHH
Confidence             000111111111              1111111111  1111223334444443333333333332    333355666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHH
Q 006565          358 VQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLA-MERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEAL  436 (640)
Q Consensus       358 ~~~rleeaEee~kea~e~~~~areead~aq~E~~elQr~~-~qrlaeIerl~~qIE~lEre~e~Le~E~~~l~~sEl~al  436 (640)
                      -.++++....++-.....+......++.+|..+...+..+ +=..+.++.. ..|+..++.++.+....           
T Consensus       424 ~lq~LE~v~~~l~~~~~~~~~s~~~~~~~r~~A~a~~~~~~~~~~~~~~~~-~~me~~a~~~~~~~~q~-----------  491 (552)
T KOG2037|consen  424 YLQSLESVEEELLQTDQALTESKKLFLAARTPAEAAAKEAILLILSGLEGF-IGMEIAARLIEETMKQL-----------  491 (552)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccchhHHHhccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-----------
Confidence            6678888888888888888888889999988888877544 4444557777 77788777777665554           


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Q 006565          437 SKVALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQEL  510 (640)
Q Consensus       437 ~kv~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~l~e~nrrleal~~e~~~lqs~id~Leg~~  510 (640)
                               +.++......++.....++...+...+..+.+....-..      .+..+++-++.++++++.+.
T Consensus       492 ---------~~~~~~~a~~~~s~~~~~l~~~v~~~~~~l~e~~~~~~~------~~~~ei~~a~~~~~~~~~~~  550 (552)
T KOG2037|consen  492 ---------VEELETWAYVLLSEQERTLAHKVKSQEKLLWEGFSKESR------ELNLEIQEAQRMIEALKAES  550 (552)
T ss_pred             ---------HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhchhh------hhhHHHHHHHHHHHhccccc
Confidence                     222222222232333344445555555544444333221      16777778888888776654

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=86.77  E-value=47  Score=35.35  Aligned_cols=60  Identities=17%  Similarity=0.324  Sum_probs=23.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          282 EQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDK  341 (640)
Q Consensus       282 Eq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei  341 (640)
                      +..|..++.+...++.+|..+.+.+..+..++..+..+....+.++..++.+|..++.+|
T Consensus        37 ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I   96 (265)
T COG3883          37 DSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENI   96 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333334333333333333333333333333333334444444443333333

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=86.64  E-value=40  Score=38.26  Aligned_cols=30  Identities=20%  Similarity=0.299  Sum_probs=11.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          312 ETKELSEKLEAVNAKAQSFEREARIMEQDK  341 (640)
Q Consensus       312 el~~L~ekle~~~~eies~e~el~~L~~ei  341 (640)
                      ++......++.+..+..+++.+...+....
T Consensus       348 qlen~k~~~e~~~~e~~~l~~~~~~~e~~k  377 (493)
T KOG0804|consen  348 QLENQKQYYELLITEADSLKQESSDLEAEK  377 (493)
T ss_pred             HHHhHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence            333333333333333333333333333333

>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family

Probab=86.26  E-value=32  Score=37.39  Aligned_cols=30  Identities=23%  Similarity=0.350  Sum_probs=19.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          261 SSTLAEKEEEMKEKATKIEHAEQCLTTLRL  290 (640)
Q Consensus       261 ~s~le~kE~kie~~k~ei~~aEq~la~~q~  290 (640)
                      ..+..|++.++..++.++..++..+...+.
T Consensus       169 ~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~  198 (362)
T TIGR01010       169 KDTIAFAENEVKEAEQRLNATKAELLKYQI  198 (362)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345666666667777777777766666654

This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.

>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function

Probab=86.25  E-value=57  Score=35.81  Aligned_cols=80  Identities=11%  Similarity=0.141  Sum_probs=40.9

Q ss_pred             HHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          291 ELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAK  370 (640)
Q Consensus       291 eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~k  370 (640)
                      .+.+...+...+..--..+..++....+=.-..+.+.+.++.-+..++++...++-++.+......+..++-..+..++.
T Consensus        93 s~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELa  172 (401)
T PF06785_consen   93 SVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELA  172 (401)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHH
Confidence            33333334444444444445555555555555555666666666666666666665555555544444444444433433

>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]

Probab=86.21  E-value=60  Score=37.49  Aligned_cols=91  Identities=16%  Similarity=0.246  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          272 KEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSE  351 (640)
Q Consensus       272 e~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se  351 (640)
                      ......+...-+.|+....+++....++..+.+.+-.++..++.+....+.+..-+..+..--..+..+..+++.++...
T Consensus       208 rdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~  287 (596)
T KOG4360|consen  208 RDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAEC  287 (596)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            33334444444444555555555555555555555555555555555555555555555555555555555554444444


Q ss_pred             HHHHHHHHHHH
Q 006565          352 FERFEEVQERC  362 (640)
Q Consensus       352 ~er~ee~~~rl  362 (640)
                      .+.|.+.++.+
T Consensus       288 m~~~~EaeeEL  298 (596)
T KOG4360|consen  288 MQMLHEAEEEL  298 (596)
T ss_pred             HHHHHHHHHHH
Confidence            44444433333

>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional

Probab=86.12  E-value=39  Score=40.55  Aligned_cols=35  Identities=20%  Similarity=0.282  Sum_probs=29.2

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          257 REEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLE  291 (640)
Q Consensus       257 ree~~s~le~kE~kie~~k~ei~~aEq~la~~q~e  291 (640)
                      ......+++|++.++..++.++..+|..+...+..
T Consensus       262 ~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~  296 (726)
T PRK09841        262 AAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQ  296 (726)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66667778999999999999999999998888664

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=85.94  E-value=14  Score=43.23  Aligned_cols=102  Identities=18%  Similarity=0.267  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHhHHHHhhhcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          411 IESLERQKTDLTNEVNRIRESELEALSK-VALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMA  489 (640)
Q Consensus       411 IE~lEre~e~Le~E~~~l~~sEl~al~k-v~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~l~e~nrrl  489 (640)
                      +..++..++.|+.+...|. .++..+.+ +..|+++++.+..++..=     ....-.+..++..|..++..|.+..++.
T Consensus       424 i~~~~~~ve~l~~e~~~L~-~~~ee~k~eie~L~~~l~~~~r~~~~~-----~~~~rei~~~~~~I~~L~~~L~e~~~~v  497 (652)
T COG2433         424 IKKLEETVERLEEENSELK-RELEELKREIEKLESELERFRREVRDK-----VRKDREIRARDRRIERLEKELEEKKKRV  497 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444444444 44444445 666666666665554421     1123344455555666666666666666


Q ss_pred             HHhhHHHHHHHHHHHH-HHHHhhhhhcccc
Q 006565          490 ERLSLEVQSAQAKLDE-MQQELTKARLNET  518 (640)
Q Consensus       490 eal~~e~~~lqs~id~-Leg~~~~~~~~et  518 (640)
                      +.|...+..+..+-.. +.|--+||---|+
T Consensus       498 e~L~~~l~~l~k~~~lE~sG~g~pvk~ve~  527 (652)
T COG2433         498 EELERKLAELRKMRKLELSGKGTPVKVVEK  527 (652)
T ss_pred             HHHHHHHHHHHHHHhhhhcCCCcceehhhh
Confidence            6666666666633332 2355445444443

>PRK11519 tyrosine kinase; Provisional

Probab=85.88  E-value=48  Score=39.74  Aligned_cols=35  Identities=29%  Similarity=0.385  Sum_probs=29.9

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          257 REEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLE  291 (640)
Q Consensus       257 ree~~s~le~kE~kie~~k~ei~~aEq~la~~q~e  291 (640)
                      ......+++|++.++..++.++..+|..++..+..
T Consensus       262 ~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~  296 (719)
T PRK11519        262 SEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQD  296 (719)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66677789999999999999999999999888664

>PRK10884 SH3 domain-containing protein; Provisional

Probab=85.78  E-value=13  Score=38.01  Aligned_cols=58  Identities=21%  Similarity=0.370  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHHhHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 006565          409 RQIESLERQKTDLTNEVNRIRESELEALSKVALLEARVEEREKEIESLLESNNEQRASTVKK  470 (640)
Q Consensus       409 ~qIE~lEre~e~Le~E~~~l~~sEl~al~kv~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~  470 (640)
                      .++..+++++..+..+...++ ++.+  .....+...++..+..+.+| ..++.++..++..
T Consensus        93 ~rlp~le~el~~l~~~l~~~~-~~~~--~~~~~l~~~~~~~~~~~~~L-~~~n~~L~~~l~~  150 (206)
T PRK10884         93 TRVPDLENQVKTLTDKLNNID-NTWN--QRTAEMQQKVAQSDSVINGL-KEENQKLKNQLIV  150 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-hHHH--HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence            344555555555555555554 3322  11344444444444444444 4444444444433

>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans

Probab=85.73  E-value=38  Score=33.30  Aligned_cols=131  Identities=18%  Similarity=0.329  Sum_probs=84.3

Q ss_pred             HHHHHHHHhhhchHHHHHHHHHhHHHhHHHHHHhhhcCchhHHHHHHHHHHhhH---HhHHHHHHHhhHHhH---HH-HH
Q 006565           55 KLATFLQQSSEGPILDLVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSE---RYKSEYLKRYDDAIN---DK-KK  127 (640)
Q Consensus        55 k~~~~L~~~l~~~~~d~~~~~~~~i~~~~~~l~~~c~s~~~k~~~~~k~le~~~---k~~~~~~k~~e~~i~---d~-kk  127 (640)
                      -|+..+..+=..++..+.=+.++....+++ +...++..+..+..|....+.++   .....+++.++.-+.   |- ..
T Consensus        11 EfE~lId~~G~e~v~~LmP~VV~vLE~Le~-~~~~n~~~~~e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed~~~~   89 (158)
T PF09744_consen   11 EFERLIDRYGEEAVKGLMPKVVRVLELLES-LASRNQEHEVELELLREDNEQLETQYEREKELRKQAEEELLELEDQWRQ   89 (158)
T ss_pred             HHHHHHHHhChhHHHHHHHHHHHHHHHHHH-HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456666666666677777777777777754 55566788888888776555554   455556666664333   22 44


Q ss_pred             hhHHHHHHHHhHHhhhcchHHhHHhhHHhHHhhhhhhHHHHHHHHHHHhHhhHhhHHHh
Q 006565          128 LADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVC  186 (640)
Q Consensus       128 ~~~~~~~~~~~l~~k~~s~ee~~~~l~k~le~~~~e~~ew~~kYe~~~~~~k~~~~~~A  186 (640)
                      -..++.+.+..|+..++.|+-++.+++.+.......-.+|++.|...-..+..+--.|.
T Consensus        90 e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~er~~e~l~~~~  148 (158)
T PF09744_consen   90 ERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLHERERELLRKLK  148 (158)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55566666666666666677677777777766777777788888776665554443333

Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.

>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway

Probab=85.26  E-value=25  Score=30.79  Aligned_cols=102  Identities=19%  Similarity=0.245  Sum_probs=41.6

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-----HHHhhhcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhh
Q 006565          387 RKGKSEFENLAMERMAVIERVQRQIESLERQKTDLT-----NEVNRIRESELEALSK-VALLEARVEEREKEIESLLESN  460 (640)
Q Consensus       387 q~E~~elQr~~~qrlaeIerl~~qIE~lEre~e~Le-----~E~~~l~~sEl~al~k-v~~lE~~vee~e~eiE~L~~~~  460 (640)
                      +..+..+++.......++..+...+..+...+....     .+..... .-+..+.. +......+...+.+++.. ...
T Consensus         4 ~~~l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~-~~~~~l~~~i~~~~~~~~~~~~~~~~~-r~~   81 (123)
T PF02050_consen    4 EQELAEAQQELQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQ-RYISALEQAIQQQQQELERLEQEVEQA-REE   81 (123)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence            333444444444444444444444444444443333     2222222 22333333 444444444444444444 444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          461 NEQRASTVKKLEDLLESERRSRAAANAMAE  490 (640)
Q Consensus       461 ~eq~~~~l~~le~~le~~re~l~e~nrrle  490 (640)
                      ...-...+..++.+++...........+.+
T Consensus        82 l~~a~~~~k~~e~L~e~~~~~~~~~~~r~E  111 (123)
T PF02050_consen   82 LQEARRERKKLEKLKERRREEYQQEEERRE  111 (123)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444555555555544444444444433

Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.

>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57

Probab=85.06  E-value=45  Score=33.52  Aligned_cols=95  Identities=16%  Similarity=0.192  Sum_probs=53.4

Q ss_pred             HHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          292 LKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKK  371 (640)
Q Consensus       292 L~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~ke  371 (640)
                      |..+..||+.++-+...++..++.|...-       ..|..-+..-..+...-.   ......-..+...+..|+.+|.-
T Consensus         6 LK~LQeKIrrLELER~qAe~nl~~LS~et-------~~yk~vl~~~~~~~~~~~---~e~~~q~~dl~~qL~aAEtRCsl   75 (178)
T PF14073_consen    6 LKNLQEKIRRLELERSQAEDNLKQLSRET-------SHYKKVLQSEQNERERAH---QELSKQNQDLSSQLSAAETRCSL   75 (178)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHH-------HHhHHHHHHHhhhhhccc---chhhhccHHHHHHHHHHHHHHHH
Confidence            45566666666666666666666555543       333322221111111111   11112244567778888888888


Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHH
Q 006565          372 ATELADRERAEAAAARKGKSEFENL  396 (640)
Q Consensus       372 a~e~~~~areead~aq~E~~elQr~  396 (640)
                      .+.+++.++..+..+..|...+-..
T Consensus        76 LEKQLeyMRkmv~~ae~er~~~le~  100 (178)
T PF14073_consen   76 LEKQLEYMRKMVESAEKERNAVLEQ  100 (178)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            8888888888887777665554433

>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins

Probab=84.93  E-value=42  Score=33.09  Aligned_cols=123  Identities=18%  Similarity=0.288  Sum_probs=65.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 006565          319 KLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKV-AEKEAKKATELADRERAEAAAARKGKSEFENLA  397 (640)
Q Consensus       319 kle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rlee-aEee~kea~e~~~~areead~aq~E~~elQr~~  397 (640)
                      .++.+..++.....++...-.+.+.|+........++.++...|.. .++.++.|.+.+...+-.+...|..-..     
T Consensus        28 E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~re~E~q-----  102 (159)
T PF05384_consen   28 EYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAMLREREKQ-----  102 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence            3444445555555555555555555555556666666666666654 3555666666665554444444433333     


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 006565          398 MERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSK-VALLEARVEEREKEIESL  456 (640)
Q Consensus       398 ~qrlaeIerl~~qIE~lEre~e~Le~E~~~l~~sEl~al~k-v~~lE~~vee~e~eiE~L  456 (640)
                               |+..-+.|++++.++..-+.+-. .=...+.- +..|...+...-..++++
T Consensus       103 ---------Lr~rRD~LErrl~~l~~tierAE-~l~sqi~vvl~yL~~dl~~v~~~~e~~  152 (159)
T PF05384_consen  103 ---------LRERRDELERRLRNLEETIERAE-NLVSQIGVVLNYLSGDLQQVSEQIEDA  152 (159)
T ss_pred             ---------HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence                     33444555555555555454444 33444444 566666666666666655

The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=84.86  E-value=1.3e+02  Score=38.86  Aligned_cols=46  Identities=20%  Similarity=0.257  Sum_probs=31.5

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          306 ISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSE  351 (640)
Q Consensus       306 i~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se  351 (640)
                      -..=..+|..|..++..+..++..+..++..+...+..|...+.+.
T Consensus       737 ~~~R~~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~~~  782 (1353)
T TIGR02680       737 ERARLRRIAELDARLAAVDDELAELARELRALGARQRALADELAGA  782 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            3444566777777777777777777777777777777776665544

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=84.81  E-value=74  Score=35.85  Aligned_cols=27  Identities=11%  Similarity=0.172  Sum_probs=13.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          394 ENLAMERMAVIERVQRQIESLERQKTD  420 (640)
Q Consensus       394 Qr~~~qrlaeIerl~~qIE~lEre~e~  420 (640)
                      ...+.+..+++..++.++..++..+..
T Consensus       290 ~~~l~~~~~~l~~~~~~l~~a~~~l~~  316 (457)
T TIGR01000       290 KQEITDLNQKLLELESKIKSLKEDSQK  316 (457)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            334444444455555555555555443

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=84.64  E-value=42  Score=34.95  Aligned_cols=49  Identities=10%  Similarity=0.120  Sum_probs=27.6

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhc
Q 006565          381 AEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIR  429 (640)
Q Consensus       381 eead~aq~E~~elQr~~~qrlaeIerl~~qIE~lEre~e~Le~E~~~l~  429 (640)
                      .+.+....|....-..+-++.++|..++..|..++.+.+.....+.++.
T Consensus        39 kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~   87 (230)
T PF10146_consen   39 KEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLY   87 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444555556666666666666666666666555555555

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>TIGR02977 phageshock_pspA phage shock protein A

Probab=84.53  E-value=50  Score=33.67  Aligned_cols=126  Identities=12%  Similarity=0.213  Sum_probs=76.3

Q ss_pred             HHHHhhHHhHHHHHhhHHHHHHHHhHHhhhcchHHhHHhhHHhHHhhhhhhHHHHHHHHHHHhHhhHhhHHHhhhHHHHh
Q 006565          114 YLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLK  193 (640)
Q Consensus       114 ~~k~~e~~i~d~kk~~~~~~~~~~~l~~k~~s~ee~~~~l~k~le~~~~e~~ew~~kYe~~~~~~k~~~~~~AAGIsklK  193 (640)
                      +....++|+--+.-.+.++...+...+.-+-..==..-.+..+++.......+|..+=..++..-.   +++|-..-   
T Consensus        18 ~~dk~EDP~~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~---EdLAr~Al---   91 (219)
T TIGR02977        18 LLDKAEDPEKMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGR---EDLARAAL---   91 (219)
T ss_pred             HHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---HHHHHHHH---
Confidence            333444454444444444444444444433333334445677788889999999999988887443   44444443   


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006565          194 SRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERT  245 (640)
Q Consensus       194 ~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAeek~a~L~er~  245 (640)
                      .++............+++.....+...+.++..|..+-..+..+...|.-+.
T Consensus        92 ~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~  143 (219)
T TIGR02977        92 IEKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRH  143 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3666666666666667777777777777777666666666665555555554

Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.

>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA

Probab=84.36  E-value=22  Score=38.46  Aligned_cols=86  Identities=16%  Similarity=0.169  Sum_probs=61.1

Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          305 EISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAA  384 (640)
Q Consensus       305 ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~kea~e~~~~areead  384 (640)
                      -+..+...+..+++++..+=---..+.++-..|.++++.|..+++...+.|......+.+.-.++...+..++..+.+++
T Consensus        78 s~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~  157 (302)
T PF09738_consen   78 SLRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELD  157 (302)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555888889999998888877888888888888888888888777777777777776655555555555555544444


Q ss_pred             HHHhhH
Q 006565          385 AARKGK  390 (640)
Q Consensus       385 ~aq~E~  390 (640)
                      .++.++
T Consensus       158 ~Lre~L  163 (302)
T PF09738_consen  158 ELREQL  163 (302)
T ss_pred             HHHHHH
Confidence            444443

They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=84.01  E-value=40  Score=32.13  Aligned_cols=27  Identities=15%  Similarity=0.287  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          392 EFENLAMERMAVIERVQRQIESLERQK  418 (640)
Q Consensus       392 elQr~~~qrlaeIerl~~qIE~lEre~  418 (640)
                      .++....+...+|-+.+..|++|..++
T Consensus       123 ~~~~~~tq~~~e~rkke~E~~kLk~rL  149 (151)
T PF11559_consen  123 QLQQRKTQYEHELRKKEREIEKLKERL  149 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            334555666666666666666666554

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=83.15  E-value=94  Score=35.71  Aligned_cols=97  Identities=16%  Similarity=0.198  Sum_probs=56.0

Q ss_pred             HHHHHHHhHHhhhcchHHhHHhhHHhHHhhhhhhHHHHHHHHHHHhHhhHhhHHHhhhHHHHhhhhHHHHHHHHHHHHHH
Q 006565          131 DYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQA  210 (640)
Q Consensus       131 ~~~~~~~~l~~k~~s~ee~~~~l~k~le~~~~e~~ew~~kYe~~~~~~k~~~~~~AAGIsklK~Rkkeae~RL~at~enL  210 (640)
                      .+-.++..|.....-|.+++..-.|.=...+    .-..||-.    -+.++..|-+-++-+|.++.+-.+.++....+.
T Consensus       268 ~i~~~i~~lk~~n~~l~e~i~ea~k~s~~i~----~l~ek~r~----l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~ei  339 (622)
T COG5185         268 IINTDIANLKTQNDNLYEKIQEAMKISQKIK----TLREKWRA----LKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEI  339 (622)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH----HhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence            3445666666666667776666555433222    12223322    233344455555566666666677777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          211 LSAQEEVEEWKRKYGVAVREAKAAL  235 (640)
Q Consensus       211 ~RVkDel~Ewkrky~~L~~QAKkAe  235 (640)
                      .-++.++.-.+.|.+.|..|..+-.
T Consensus       340 e~kEeei~~L~~~~d~L~~q~~kq~  364 (622)
T COG5185         340 ELKEEEIKALQSNIDELHKQLRKQG  364 (622)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHhcC
Confidence            7777777777777777766655443

>smart00787 Spc7 Spc7 kinetochore protein

Probab=82.61  E-value=78  Score=34.40  Aligned_cols=17  Identities=6%  Similarity=0.165  Sum_probs=8.2

Q ss_pred             HhhhhHHHHHHHHHHHH
Q 006565          192 LKSRSTAAEARLAAARE  208 (640)
Q Consensus       192 lK~Rkkeae~RL~at~e  208 (640)
                      |.=-|.++.++.+.-+.
T Consensus        68 Y~~sC~EL~~~I~egr~   84 (312)
T smart00787       68 YQFSCKELKKYISEGRD   84 (312)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            44455555555444443

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=82.55  E-value=77  Score=34.30  Aligned_cols=28  Identities=25%  Similarity=0.464  Sum_probs=19.8

Q ss_pred             hHHhHHhhHHhHHhhhhhhHHHHHHHHH
Q 006565          146 LREKSSSLSKTVDSLKNEISDWKRKYDQ  173 (640)
Q Consensus       146 ~ee~~~~l~k~le~~~~e~~ew~~kYe~  173 (640)
                      |-+.++.|.-.+|..+....+=-++|=.
T Consensus         4 Lq~eia~LrlEidtik~q~qekE~ky~e   31 (305)
T PF14915_consen    4 LQDEIAMLRLEIDTIKNQNQEKEKKYLE   31 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            4566777777778887777777667644

>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases

Probab=82.53  E-value=79  Score=34.45  Aligned_cols=44  Identities=20%  Similarity=0.228  Sum_probs=21.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006565          202 RLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERT  245 (640)
Q Consensus       202 RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAeek~a~L~er~  245 (640)
                      ||..=-.-|.-+...+.+.+.++....-+-.........+-..+
T Consensus         2 rl~~GL~KL~et~~~V~~m~~~L~~~~~~L~~k~~e~e~ll~~i   45 (344)
T PF12777_consen    2 RLENGLDKLKETEEQVEEMQEELEEKQPELEEKQKEAEELLEEI   45 (344)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444555555555555555555555554444444443333

The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.

>COG4717 Uncharacterized conserved protein [Function unknown]

Probab=82.47  E-value=1.3e+02  Score=36.95  Aligned_cols=46  Identities=22%  Similarity=0.171  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Q 006565          465 ASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQEL  510 (640)
Q Consensus       465 ~~~l~~le~~le~~re~l~e~nrrleal~~e~~~lqs~id~Leg~~  510 (640)
                      -.++-.+...-.++...+.+..+.=-.++.=.+++...|..++..-
T Consensus       810 g~~~a~lr~~~~slk~~l~e~ar~Wasl~~~~~vl~e~l~~~ke~r  855 (984)
T COG4717         810 GGTVAELRQRRESLKEDLEEKARKWASLRLAVQVLEEALRLFKERR  855 (984)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            3466666777777777777777777777776666666666654433

>PF13166 AAA_13: AAA domain

Probab=82.44  E-value=1.1e+02  Score=36.11  Aligned_cols=46  Identities=15%  Similarity=0.302  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Q 006565          465 ASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQEL  510 (640)
Q Consensus       465 ~~~l~~le~~le~~re~l~e~nrrleal~~e~~~lqs~id~Leg~~  510 (640)
                      ...+..++..+......+...+..+.++..++..+..-++.+-.++
T Consensus       423 ~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~iN~~L  468 (712)
T PF13166_consen  423 EKEINSLEKKLKKAKEEIKKIEKEIKELEAQLKNTEPAADRINEEL  468 (712)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            3334444444444444444444444444444444444444433333

>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer

Probab=82.18  E-value=2.6  Score=45.76  Aligned_cols=116  Identities=16%  Similarity=0.291  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 006565          403 VIERVQRQIESLERQKTDLTNEVNRIRESELEALSK-VALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRS  481 (640)
Q Consensus       403 eIerl~~qIE~lEre~e~Le~E~~~l~~sEl~al~k-v~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~  481 (640)
                      .|..+...+-.++-.+.++...+..+. .++..+.. |..+..-|..+...+..| ........+.|..+...+..+...
T Consensus        50 SVs~lss~iSdLss~L~~l~~sl~~~~-s~L~sLsstV~~lq~Sl~~lsssVs~l-S~~ls~h~ssIS~Lqs~v~~lsTd  127 (326)
T PF04582_consen   50 SVSSLSSTISDLSSDLQDLASSLADMT-SELNSLSSTVTSLQSSLSSLSSSVSSL-SSTLSDHSSSISDLQSSVSALSTD  127 (326)
T ss_dssp             ----------------------------------------------------------------------HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhHHhh-hhhhhhhhhhHHHHHHhhhhhhhh
Confidence            344444445555555555555556666 66666666 666666666666667766 666666788888888888888888


Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHH-------hhhhhcccccc
Q 006565          482 RAAANAMAERLSLEVQSAQAKLDEMQQE-------LTKARLNETAL  520 (640)
Q Consensus       482 l~e~nrrleal~~e~~~lqs~id~Leg~-------~~~~~~~et~l  520 (640)
                      +.-...-+....+.+..+++.|..||+-       ..|.+++.-.+
T Consensus       128 vsNLksdVSt~aL~ItdLe~RV~~LEs~~s~~l~f~~PL~~~~g~v  173 (326)
T PF04582_consen  128 VSNLKSDVSTQALNITDLESRVKALESGSSSPLTFSAPLKLDDGVV  173 (326)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTT-EE-TTEEECTTEE
T ss_pred             hhhhhhhhhhhcchHhhHHHHHHHHhcCCCCCceecCCeEecCCEE
Confidence            8888889999999999999999998764       44555554433

It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]

Probab=82.18  E-value=73  Score=33.79  Aligned_cols=26  Identities=27%  Similarity=0.330  Sum_probs=18.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHH
Q 006565          281 AEQCLTTLRLELKAAESKMRSYEVEI  306 (640)
Q Consensus       281 aEq~la~~q~eL~e~e~kIk~~e~ei  306 (640)
                      ..+....++.+|+++..--+.++.++
T Consensus        25 ykq~f~~~reEl~EFQegSrE~Eael   50 (333)
T KOG1853|consen   25 YKQHFLQMREELNEFQEGSREIEAEL   50 (333)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            34566677888888887777776653

>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]

Probab=81.52  E-value=1.1e+02  Score=35.43  Aligned_cols=110  Identities=11%  Similarity=0.138  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          264 LAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVY  343 (640)
Q Consensus       264 le~kE~kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~  343 (640)
                      -+|...-|.....++...--.+.+.+++|..+......+..++..|..+|-.+..+..-+.-+-+.+..-+....+.=..
T Consensus       193 ~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~q  272 (596)
T KOG4360|consen  193 EEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQ  272 (596)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            34444455566666666666777777777777777777777777777777777777666666666666666666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          344 LEQKYKSEFERFEEVQERCKVAEKEAKKAT  373 (640)
Q Consensus       344 L~ekl~se~er~ee~~~rleeaEee~kea~  373 (640)
                      ++........+|.+....+.+++++++.++
T Consensus       273 l~aE~~EleDkyAE~m~~~~EaeeELk~lr  302 (596)
T KOG4360|consen  273 LTAELEELEDKYAECMQMLHEAEEELKCLR  302 (596)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            666666666666666666666666655544

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=80.72  E-value=54  Score=31.28  Aligned_cols=78  Identities=28%  Similarity=0.423  Sum_probs=36.5

Q ss_pred             HHHHHHhHHHHhhhcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006565          415 ERQKTDLTNEVNRIRESELEALSK-VALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLS  493 (640)
Q Consensus       415 Ere~e~Le~E~~~l~~sEl~al~k-v~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~l~e~nrrleal~  493 (640)
                      -...+.+...+.+++ +++..+.. +..++..+++.+.++..+ .....++...+..+...+..+++.+......+....
T Consensus        51 ~~~~e~l~~~~~~l~-~d~~~l~~~~~rL~~~~~~~ere~~~~-~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~  128 (151)
T PF11559_consen   51 MEQREDLSDKLRRLR-SDIERLQNDVERLKEQLEELERELASA-EEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRK  128 (151)
T ss_pred             HHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444444 44444444 444555555555555544 444444455555555555555554444444444333


Q ss_pred             H
Q 006565          494 L  494 (640)
Q Consensus       494 ~  494 (640)
                      .
T Consensus       129 t  129 (151)
T PF11559_consen  129 T  129 (151)
T ss_pred             H
Confidence            3

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	640
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-20
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-18
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-13
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	6e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-15
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	6e-12
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-10
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	5e-07
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	9e-06
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	9e-06
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	1e-04
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	4e-04
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	5e-04
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	3e-05
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	4e-04

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 95.3 bits (237), Expect = 2e-20
 Identities = 59/326 (18%), Positives = 142/326 (43%), Gaps = 21/326 (6%)

Query: 213  AQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLR--EEFSSTLAEKEEE 270
             +EE++    +        + A  +   ++++ ++  +++  +    +  +   AE EE 
Sbjct: 855  QEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEM 914

Query: 271  MKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSF 330
                A K +  E+ L  +   ++  E + +  + E    + +  +L E+LE   A  Q  
Sbjct: 915  RVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKL 974

Query: 331  EREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGK 390
            + E    +     +E       ++  ++ +  K+ E+     T     E  +A    K K
Sbjct: 975  QLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLK 1034

Query: 391  SEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKVALLEARVEERE 450
            ++ E++  E    +++ ++  + LE+ K  L  E + + E   E  +++A L+A++ ++E
Sbjct: 1035 NKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKE 1094

Query: 451  KEIESLLESNNEQRA-------------STVKKLEDLLESERRSRAAANAMAERLSLEVQ 497
            +E+++ L    ++ +             S +  L++ LESE+ +R  A      LS E++
Sbjct: 1095 EELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELE 1154

Query: 498  SAQAKLDE------MQQELTKARLNE 517
            + + +L++       QQEL  +   +
Sbjct: 1155 ALKTELEDTLDTTATQQELRGSDYKD 1180

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 89.5 bits (222), Expect = 1e-18
 Identities = 54/338 (15%), Positives = 129/338 (38%), Gaps = 9/338 (2%)

Query: 117  RYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLT 176
            R ++ +  K +       R    + E   L +K + L +  + L+ ++      Y +   
Sbjct: 854  RQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEE 913

Query: 177  KQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALE 236
             +  +  +     + L+      EAR+    E++   Q E    K+K    + + +  LE
Sbjct: 914  MRVRLAAKK----QELEEILHEMEARIEEEEERSQQLQAE----KKKMQQQMLDLEEQLE 965

Query: 237  KAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAE 296
            +    +++   E    +  +++     +   E++  +   + +  E+ ++ L   L   E
Sbjct: 966  EEEAARQKLQLEKVTADGKIKKMEDD-ILIMEDQNNKLTKERKLLEERVSDLTTNLAEEE 1024

Query: 297  SKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFE 356
             K ++     +  +    EL  +L+      Q  E+  R +E +   L ++      +  
Sbjct: 1025 EKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIA 1084

Query: 357  EVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLER 416
            E++ +    E+E + A    + E ++   A K   E E+   +    +E  +      E+
Sbjct: 1085 ELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEK 1144

Query: 417  QKTDLTNEVNRIRESELEALSKVALLEARVEEREKEIE 454
            QK DL+ E+  ++    + L   A  +       K+ +
Sbjct: 1145 QKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDD 1182

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 73.7 bits (181), Expect = 1e-13
 Identities = 39/332 (11%), Positives = 121/332 (36%), Gaps = 19/332 (5%)

Query: 72   VKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLE---DSERYKSEYLKRYDDAINDKKKL 128
             K    +  +E   L  K+  + +   LL+++L+   +      E   R      + +++
Sbjct: 869  TKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEI 928

Query: 129  ADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSE 188
              +  +RI   +  +  L+ +   + + +  L+ ++ + +        K +  +     +
Sbjct: 929  LHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAA----RQKLQLEKVTADGK 984

Query: 189  IEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKE 248
            I+ ++      E +     ++    +E V +          E    L K     E    E
Sbjct: 985  IKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNL-AEEEEKAKNLTKLKNKHESMISE 1043

Query: 249  MQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISS 308
            ++ R           L ++E+  +E        E   + L  ++   ++++   + +++ 
Sbjct: 1044 LEVR-----------LKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAK 1092

Query: 309  QKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKE 368
            ++ E +    +LE   ++  +  ++ R +E     L++  +SE     + +++ +   +E
Sbjct: 1093 KEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEE 1152

Query: 369  AKKATELADRERAEAAAARKGKSEFENLAMER 400
             +      +      A  ++ +        ++
Sbjct: 1153 LEALKTELEDTLDTTATQQELRGSDYKDDDDK 1184

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 67.9 bits (166), Expect = 6e-12
 Identities = 47/327 (14%), Positives = 113/327 (34%), Gaps = 14/327 (4%)

Query: 244  RTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYE 303
            R  +EMQ +++ L+        + E E+KE   K     +    L+ +L+A        E
Sbjct: 854  RQEEEMQAKDEELQRTKER-QQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAE 912

Query: 304  VEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCK 363
                    + +EL E L  + A+ +  E  ++ ++ +K  ++Q+     E+ EE +   +
Sbjct: 913  EMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQ 972

Query: 364  VAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTN 423
              + E   A     +   +        ++           +  +   +   E +  +LT 
Sbjct: 973  KLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTK 1032

Query: 424  EVNRIRESELEALSKVALLEARVEEREKEIESL-------------LESNNEQRASTVKK 470
              N+      E   ++   E   +E EK    L             L++   +  + + K
Sbjct: 1033 LKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAK 1092

Query: 471  LEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQELTKARLNETALGSKLRAVSHG 530
             E+ L++         +       +++  ++ + ++Q++L   +        + R +S  
Sbjct: 1093 KEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEE 1152

Query: 531  KRARADDYEAGVGSVQEMDTNDKVLRA 557
              A   + E  + +             
Sbjct: 1153 LEALKTELEDTLDTTATQQELRGSDYK 1179

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 78.0 bits (191), Expect = 4e-15
 Identities = 91/665 (13%), Positives = 189/665 (28%), Gaps = 206/665 (30%)

Query: 68  ILDLVKRLI-----DQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKR-YD-- 119
           + D+ K ++     D I   + ++    R       LL KQ E  +++  E L+  Y   
Sbjct: 38  VQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW---TLLSKQEEMVQKFVEEVLRINYKFL 94

Query: 120 -DAI----NDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKR----- 169
              I         +   Y  + + L  +N    + + S  +    L+  + + +      
Sbjct: 95  MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL 154

Query: 170 --------KYDQVLTKQKAMEDQVCSEIEVLK-----------SRSTAAEARLAAAREQA 210
                   K    +         VC   +V                 + E  L     Q 
Sbjct: 155 IDGVLGSGK--TWVAL------DVCLSYKVQCKMDFKIFWLNLKNCNSPETVL--EMLQK 204

Query: 211 LSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEE 270
           L  Q                    ++     +   S  ++ R   ++ E    L  K   
Sbjct: 205 LLYQ--------------------IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK--- 241

Query: 271 MKEKATKI-------EHAE----QC---LTTLRLELKAAESKMRSYEVEISSQKL----- 311
             E    +       +        C   LTT   ++    S   +  + +    +     
Sbjct: 242 PYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301

Query: 312 ETKELSEKLEAVNAKAQSFEREAR---------IMEQDKVYLE--QKYK-SEFERFEEVQ 359
           E K L  K   ++ + Q   RE           I E  +  L     +K    ++   + 
Sbjct: 302 EVKSLLLK--YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII 359

Query: 360 ERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMER------MAVIERVQRQIES 413
           E              L   E AE       +  F+ L++          ++  +   +  
Sbjct: 360 ESS------------LNVLEPAEY------RKMFDRLSVFPPSAHIPTILLSLIWFDVI- 400

Query: 414 LERQKTDLTNEVNRIRESELEALSKVALLEARVEEREKEIESL---LESNNEQRASTVKK 470
                    ++V       +  L K +L+E + +E    I S+   L+   E   +  + 
Sbjct: 401 --------KSDV----MVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRS 448

Query: 471 LEDLLESERRSRAAANAMAERLSLEVQS-----------AQAKLDEMQQELTKARLNETA 519
              +++     +   +   + L                    +  E         L+   
Sbjct: 449 ---IVDHYNIPKTFDS---DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRF 502

Query: 520 LGSKLRAVSHGKRARADDYEAGVGSVQEMDT-NDKVLRANKRSRSTTSPLKYTQPEDGGS 578
           L  K+R  S    A         GS+  ++T     L+             Y        
Sbjct: 503 LEQKIRHDSTAWNAS--------GSI--LNTLQQ--LK------------FYKP------ 532

Query: 579 VFRGDDDNLSQQSNQEDYTKFTVQKLKQELTKHNFGAELLQ--LRNPNKKEILALYEKC- 635
            +  D+D   ++        F + K+++ L    +  +LL+  L   ++    A++E+  
Sbjct: 533 -YICDNDPKYERL-VNAILDF-LPKIEENLICSKY-TDLLRIALMAEDE----AIFEEAH 584

Query: 636 -ILQK 639
             +Q+
Sbjct: 585 KQVQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.6 bits (120), Expect = 1e-06
 Identities = 52/309 (16%), Positives = 98/309 (31%), Gaps = 69/309 (22%)

Query: 351 EFERFEEVQERCK----VAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIER 406
           +FE   E Q + K    V E       +  D +    +   K   E +++ M +   +  
Sbjct: 8   DFE-TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSK--EEIDHIIMSK-DAVSG 63

Query: 407 VQRQIESLERQKTDLTNEVNRIRESELEALSKVALLEARVEEREKEIESLLESNNEQRAS 466
             R   +L  ++      V +  E  L        L + ++  +++   +     EQR  
Sbjct: 64  TLRLFWTLLSKQE---EMVQKFVEEVLRI--NYKFLMSPIKTEQRQPSMMTRMYIEQR-- 116

Query: 467 TVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQELTKARLNETALGSKLRA 526
                 D L ++ +  A  N         V   Q    +++Q L + R  +         
Sbjct: 117 ------DRLYNDNQVFAKYN---------VSRLQ-PYLKLRQALLELRPAK-------NV 153

Query: 527 VSHGKRARADDYEAGVG-SVQEMDT--NDKVLRAN---------KRSRSTTSPLKYTQPE 574
           +  G          G G +   +D   + KV             K   S  + L+  Q  
Sbjct: 154 LIDGV--------LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ-- 203

Query: 575 DGGSVFRGDDDNLSQQSNQEDYTKFTVQKLKQELTK----HNFGAELLQLRNPNKKEILA 630
               +    D N + +S+     K  +  ++ EL +      +   LL L N    +   
Sbjct: 204 ---KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN 260

Query: 631 LYE-KC-IL 637
            +   C IL
Sbjct: 261 AFNLSCKIL 269

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 67.8 bits (166), Expect = 6e-12
 Identities = 44/259 (16%), Positives = 89/259 (34%), Gaps = 19/259 (7%)

Query: 208  EQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEK 267
            +    A   ++   R Y V  +      E  +I+ ++  +    R    R   +    + 
Sbjct: 836  QCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQC 895

Query: 268  EEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEI-SSQKLETK--ELSEKLEAVN 324
                                 + ELK  + + RS E        LE K  +L  K++  N
Sbjct: 896  CYRRMMA--------------KRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQN 941

Query: 325  AKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAA 384
             + +S   +   +E       +K +S+ ER    +E  K A        E   + R E  
Sbjct: 942  KEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELH 1001

Query: 385  AARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKVALLEA 444
              +  K   E  A +     E++  +++           E+NR    + + +++   +E 
Sbjct: 1002 QTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITE--TMEK 1059

Query: 445  RVEEREKEIESLLESNNEQ 463
            ++ E  K++E  L     +
Sbjct: 1060 KLVEETKQLELDLNDERLR 1078

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 63.2 bits (154), Expect = 2e-10
 Identities = 44/310 (14%), Positives = 109/310 (35%), Gaps = 27/310 (8%)

Query: 207  REQALSAQEEVEEWK-RKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLA 265
            R  A++ Q  V   + R Y   +R  +AA+      +    ++  Q          + L 
Sbjct: 791  RRAAITIQRYVRGHQARCYATFLRRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLR 850

Query: 266  EKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNA 325
                  K +    EH    +          +  +R +   +   +     +  +      
Sbjct: 851  GYLVRNKYQMMLREHKSIII----------QKHVRGWLARVHYHRTLKAIVYLQCCYRRM 900

Query: 326  KAQSFEREARIMEQDKVYLEQKYKSEFE-RFEEVQERCKVAEKEAKKATE-LADRERAEA 383
             A+   ++ + +E   V   +K     E +  ++Q +     KE K   E + + E   +
Sbjct: 901  MAKRELKKLK-IEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYS 959

Query: 384  AAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKVALLE 443
                K +S+ E L           + + ++   +   L  E+ ++R+   +  ++   +E
Sbjct: 960  TETEKLRSDVERL--------RMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIE 1011

Query: 444  ARVEEREKEIESL---LESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQ 500
               ++ + E E L   L+  N    +  ++L   +  +  ++     M ++L  E +  +
Sbjct: 1012 EWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQ--AKEITETMEKKLVEETKQLE 1069

Query: 501  AKLDEMQQEL 510
              L++ +   
Sbjct: 1070 LDLNDERLRY 1079

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 52.0 bits (125), Expect = 5e-07
 Identities = 23/215 (10%), Positives = 78/215 (36%), Gaps = 13/215 (6%)

Query: 170  KYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVR 229
            K+ +    +      + + + +           +A    + L  +    E  +K  + + 
Sbjct: 872  KHVRGWLARVHYHRTLKAIVYLQC----CYRRMMAKRELKKLKIEARSVERYKKLHIGLE 927

Query: 230  EAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLR 289
                 L++    Q +  K + ++ + L        + + E+++    ++  +E+      
Sbjct: 928  NKIMQLQRKIDEQNKEYKSLLEKMNNLEIT----YSTETEKLRSDVERLRMSEEEAKNAT 983

Query: 290  LELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSF----EREARIMEQDKVYLE 345
              + + + ++     E+   + E K + E  +    + +      + +  +++ +K  L 
Sbjct: 984  NRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELN 1043

Query: 346  QKYKSEFERFEEVQERCKVAEKEAKKATELADRER 380
            ++   + +   E  E+ K+ E+  +   +L D   
Sbjct: 1044 RRIHDQAKEITETMEK-KLVEETKQLELDLNDERL 1077

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 47.8 bits (114), Expect = 9e-06
 Identities = 25/164 (15%), Positives = 66/164 (40%), Gaps = 8/164 (4%)

Query: 69   LDLVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKL 128
            ++  K+L   + ++   L  K        K L +++ + E   S   ++    +   +  
Sbjct: 916  VERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMS 975

Query: 129  ADD---YTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQV 185
             ++    T+R+ +LQ E   LR++         +++     +K + +Q++++ K     +
Sbjct: 976  EEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLL 1035

Query: 186  CSEIEVLKSRSTAAEARLAAAREQALSAQE-----EVEEWKRKY 224
             +E E L  R       +    E+ L  +      ++ + + +Y
Sbjct: 1036 KTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERLRY 1079

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861

 Score = 47.9 bits (113), Expect = 9e-06
 Identities = 42/292 (14%), Positives = 93/292 (31%), Gaps = 38/292 (13%)

Query: 204 AAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSST 263
            A+R +   A    +++ +     +R A    E +       +   + R+  +  +    
Sbjct: 575 IASRVRGAVASVTFDDFHKNSARIIRMAVFGFEMSEDTGPDGTLLPKARDQAVFPQNGLV 634

Query: 264 LAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAV 323
           ++  + +  E   +               + A  +     +EI++   E     E     
Sbjct: 635 VSSVDVQSVEPVDQ-------------RTRDALQRSVQLAIEITTNSQEAAAKHEAQRLE 681

Query: 324 NAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEA 383
                  ER+          +  + ++E  R E ++     A   A ++T  A  E    
Sbjct: 682 QEARGRLERQK---------ILDQSEAEKARKELLELE---AMSMAVESTGNAKAEAESR 729

Query: 384 AAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKVALLE 443
           A A + + E   L  +  A    ++ + E LER K        ++RE EL        LE
Sbjct: 730 AEAARIEGEGSVLQAKLKAQALAIETEAE-LERVK--------KVREMELIYARAQLELE 780

Query: 444 ARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLE 495
               ++   +    E+   +  +       + +           + + L L+
Sbjct: 781 VSKAQQLANV----EAKKFKEMTEALGPGTIRDLAVAGPEMQVKLLQSLGLK 828

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861

 Score = 44.4 bits (104), Expect = 1e-04
 Identities = 38/273 (13%), Positives = 79/273 (28%), Gaps = 9/273 (3%)

Query: 224 YGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAE--KEEEMKEKATKIEHA 281
           + +  R   A   K   V +      +     +R   +S   +   +   +     +   
Sbjct: 547 FELKNRNDPAEAAKLFSVPDFVGDACKAIASRVRGAVASVTFDDFHKNSARIIRMAVFGF 606

Query: 282 EQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDK 341
           E    T        +++ ++   +           S +      +          +E   
Sbjct: 607 EMSEDTGPDGTLLPKARDQAVFPQNGLVVSSVDVQSVEPVDQRTRDALQRSVQLAIEITT 666

Query: 342 VYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERM 401
              E   K E +R E  QE     E++       A++ R E           E+    + 
Sbjct: 667 NSQEAAAKHEAQRLE--QEARGRLERQKILDQSEAEKARKELLELEAMSMAVESTGNAKA 724

Query: 402 AVIERVQRQIESLERQKTDLTNEVNRIR---ESELEALSKVALLEARVEEREKEIESLLE 458
               R +      E        +   +    E+ELE + KV  +E      + E+E  + 
Sbjct: 725 EAESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVREMELIYARAQLELE--VS 782

Query: 459 SNNEQRASTVKKLEDLLESERRSRAAANAMAER 491
              +      KK +++ E+         A+A  
Sbjct: 783 KAQQLANVEAKKFKEMTEALGPGTIRDLAVAGP 815

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861

 Score = 42.5 bits (99), Expect = 4e-04
 Identities = 28/193 (14%), Positives = 58/193 (30%), Gaps = 12/193 (6%)

Query: 197 TAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVL 256
              + R   A ++++    E+           +EA A  E   + QE   +  +Q+    
Sbjct: 644 EPVDQRTRDALQRSVQLAIEITT-------NSQEAAAKHEAQRLEQEARGRLERQKILDQ 696

Query: 257 REEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKEL 316
            E       +  +E+ E        E            AE+     E  +   KL+ + L
Sbjct: 697 SEA-----EKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQAL 751

Query: 317 SEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELA 376
           + + EA   + +       I  + ++ LE     +    E  + +            +LA
Sbjct: 752 AIETEAELERVKKVREMELIYARAQLELEVSKAQQLANVEAKKFKEMTEALGPGTIRDLA 811

Query: 377 DRERAEAAAARKG 389
                      + 
Sbjct: 812 VAGPEMQVKLLQS 824

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861

 Score = 42.1 bits (98), Expect = 5e-04
 Identities = 26/207 (12%), Positives = 63/207 (30%), Gaps = 5/207 (2%)

Query: 188 EIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSK 247
           +++ ++         L  + + A+      +E   K+     E +A            S+
Sbjct: 639 DVQSVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSE 698

Query: 248 EMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEIS 307
             + R+++L  E  S   E     K +A     A +      +     +++  + E E  
Sbjct: 699 AEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAE 758

Query: 308 SQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEK 367
            ++++     E + A         +  ++       +E K   E            +A  
Sbjct: 759 LERVKKVREMELIYARAQLELEVSKAQQLAN-----VEAKKFKEMTEALGPGTIRDLAVA 813

Query: 368 EAKKATELADRERAEAAAARKGKSEFE 394
             +   +L      ++     G S   
Sbjct: 814 GPEMQVKLLQSLGLKSTLITDGSSPIN 840

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245

 Score = 46.4 bits (110), Expect = 3e-05
 Identities = 26/196 (13%), Positives = 56/196 (28%), Gaps = 12/196 (6%)

Query: 105  EDSERYKSEYL-------KRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTV 157
            E + R             + Y D IN    L ++   ++   Q       +K       V
Sbjct: 1877 EANIRLLKRQGRQNYVTPRHYLDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQV 1936

Query: 158  DSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEV 217
              L+  ++   R+ D    +      Q+  + +  + +   A         +      + 
Sbjct: 1937 KDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQK 1996

Query: 218  EEWKRKYGVAV-----REAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMK 272
             +       A      RE    LE AA   +    E+      L +  ++   E    ++
Sbjct: 1997 VKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIR 2056

Query: 273  EKATKIEHAEQCLTTL 288
            E       + +    +
Sbjct: 2057 ETEQIKTESSKVKNKV 2072

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995

 Score = 42.7 bits (101), Expect = 4e-04
 Identities = 25/237 (10%), Positives = 63/237 (26%), Gaps = 25/237 (10%)

Query: 202 RLAAAREQALSAQEEVEEWK--RKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREE 259
                 +   S Q  +   K  +K     +  + +  +A     +T   + +RE  +   
Sbjct: 782 ESRDFGDSIESVQSFMNAHKEYKKTEKPPKGQEVSELEAIYNSLQTKLRLIKREPFVAP- 840

Query: 260 FSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEK 319
                     E+    + +E AEQ        L+    + +   V +       K+L   
Sbjct: 841 ----AGLTPNEIDSTWSALEKAEQ---EHAEALRIELKRQKKIAVLLQKYNRILKKLENW 893

Query: 320 LEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRE 379
                       +   +   +        +++ +  E     C+ + +    +  L+   
Sbjct: 894 AT---------TKSVYLGSNETGDSITAVQAKLKNLEAFDGECQ-SLEGQSNSDLLSILA 943

Query: 380 RAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEAL 436
           +             E            V+   E+ +         +      ++E L
Sbjct: 944 QLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQ-----KIEDL 995

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	640
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	99.55
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	99.41
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	99.21
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	99.02
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	97.98
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	97.62
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	97.57
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	97.52
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	97.5
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	97.19
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	96.88
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	96.67
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	96.57
2b9c_A	147	Striated-muscle alpha tropomyosin; alpha-helix, co	96.41
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	96.36
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	96.23
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	96.05
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	96.01
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	95.66
4gkw_A	167	Spindle assembly abnormal protein 6; double helix,	95.63
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	95.38
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	95.27
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	95.14
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	94.97
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	94.63
2b9c_A	147	Striated-muscle alpha tropomyosin; alpha-helix, co	94.49
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	94.23
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	94.04
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	93.92
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	93.66
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	93.6
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	93.22
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	92.06
3swk_A	86	Vimentin; cytoskeleton, intermediate filament, alp	91.98
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	91.8
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	91.04
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	90.04
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	90.03
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	89.37
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	89.15
1zrj_A	50	E1B-55KDA-associated protein 5 isoform C; SAP doma	87.93
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	86.17
2e7s_A	135	RAB guanine nucleotide exchange factor SEC2; coile	85.85
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	85.67
2e7s_A	135	RAB guanine nucleotide exchange factor SEC2; coile	84.96
1h1j_S	51	THO1 protein; SAP domain, DNA binding; NMR {Saccha	84.74
3i00_A	120	HIP-I, huntingtin-interacting protein 1; transcrip	84.23
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	84.22
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	84.2
2i1j_A	575	Moesin; FERM, coiled-coil, C-ermad, ERM, radixin,	83.84
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	83.64
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	82.17
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	81.99
3q8t_A	96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	80.95
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	80.87
2i1j_A	575	Moesin; FERM, coiled-coil, C-ermad, ERM, radixin,	80.33

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=99.55  E-value=6.3e-10  Score=108.68  Aligned_cols=279  Identities=16%  Similarity=0.210  Sum_probs=156.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          220 WKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKM  299 (640)
Q Consensus       220 wkrky~~L~~QAKkAeek~a~L~er~~~~~q~r~~a~ree~~s~le~kE~kie~~k~ei~~aEq~la~~q~eL~e~e~kI  299 (640)
                      +++++..+..+.......+..+...+. .+...    ...+...+......+..+...+......+..++..+..+...+
T Consensus         4 ~~~~~~~l~~~~~~~~~~~~~l~~~l~-~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (284)
T 1c1g_A            4 IKKKMQMLKLDKENALDRADEAEADKK-AAEDR----SKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKA   78 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455555555555555555555555553 55555    4444555555555666666666666666666666666666666


Q ss_pred             hhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          300 RSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRE  379 (640)
Q Consensus       300 k~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~kea~e~~~~a  379 (640)
                      ..+...+..+..++..+......+...+......+..+...+..+...+......+......+..+...+..+...+..+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  158 (284)
T 1c1g_A           79 TDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDA  158 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            66666666666666666666666666666666665555555555555555544444444444444444444444444444


Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 006565          380 RAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSK-VALLEARVEEREKEIESLLE  458 (640)
Q Consensus       380 reead~aq~E~~elQr~~~qrlaeIerl~~qIE~lEre~e~Le~E~~~l~~sEl~al~k-v~~lE~~vee~e~eiE~L~~  458 (640)
                      ...+...+.....       ....+..+...+..+..++..+...+..+. .++..+.. +..+...+......+..+ .
T Consensus       159 ~~~~~~~~~~~~~-------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~l-~  229 (284)
T 1c1g_A          159 DRKYEEVARKLVI-------IESDLERAEERAELSEGKCAELEEEIKTVT-NNLKSLEAQAEKYSQKEDKYEEEIKVL-S  229 (284)
T ss_dssp             HHHHHHHTHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-H
T ss_pred             HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHH-H
Confidence            4444444444433       444444444444444444444444444444 44444444 444445555555555555 5


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhh
Q 006565          459 SNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQELTK  512 (640)
Q Consensus       459 ~~~eq~~~~l~~le~~le~~re~l~e~nrrleal~~e~~~lqs~id~Leg~~~~  512 (640)
                      .....+...+..+...+......+......+..+...+..+...++.+...+.+
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  283 (284)
T 1c1g_A          230 DKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTS  283 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            555555666666666666666666666666666666667777777776666544

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=99.41  E-value=3.7e-08  Score=96.09  Aligned_cols=134  Identities=14%  Similarity=0.132  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHHHHH
Q 006565          362 CKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKVAL  441 (640)
Q Consensus       362 leeaEee~kea~e~~~~areead~aq~E~~elQr~~~qrlaeIerl~~qIE~lEre~e~Le~E~~~l~~sEl~al~kv~~  441 (640)
                      +..+...+..+...+......+.....+...+...+......+..+...+..+...+..+...+..+. ..      +..
T Consensus       148 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~  220 (284)
T 1c1g_A          148 LKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYS-QK------EDK  220 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH------HHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HH------HHH
Confidence            33333333333333333333333334444444444444444444444444444444333333333333 22      333


Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 006565          442 LEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKL  503 (640)
Q Consensus       442 lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~l~e~nrrleal~~e~~~lqs~i  503 (640)
                      ++..+......+..+ ..........+..+...+...+..+......+..+..+++.+...|
T Consensus       221 ~~~~l~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  281 (284)
T 1c1g_A          221 YEEEIKVLSDKLKEA-ETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDM  281 (284)
T ss_dssp             HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            333333333333333 3444444555555555555555555555555555555555544444

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=99.21  E-value=2.4e-11  Score=146.92  Aligned_cols=144  Identities=22%  Similarity=0.257  Sum_probs=52.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhHHHHHHHHHHHHH
Q 006565          195 RSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEK  274 (640)
Q Consensus       195 Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAeek~a~L~er~~~~~q~r~~a~ree~~s~le~kE~kie~~  274 (640)
                      ...+...+|..+..+|.++.+.+.+.+.++..|..+...+...+........ .++.+    ...+......++.++..+
T Consensus       858 El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~-~~e~~----l~~l~~~~~~Le~~l~el  932 (1184)
T 1i84_S          858 EMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYA-EAEEM----RVRLAAKKQELEEILHEM  932 (1184)
T ss_dssp             HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHH-HHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH----HHHHHHHHHHHHHHHHHH
Confidence            3445677888899999999999999999999888877777755554444442 34444    333333344444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          275 ATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVY  343 (640)
Q Consensus       275 k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~  343 (640)
                      ..++...+..+..+..++..++.++..+..++..++..+..+...+..+..++..++.++..+..++..
T Consensus       933 e~elee~ee~l~el~~e~~~le~el~~L~~eleele~~l~~l~~e~~~le~~l~~l~~el~~lee~l~~ 1001 (1184)
T 1i84_S          933 EARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNK 1001 (1184)
T ss_dssp             HHHHHHHHHC-----------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444333333333333333333333333333333333333333333333333333333333

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=99.02  E-value=5.1e-10  Score=135.39  Aligned_cols=42  Identities=29%  Similarity=0.435  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 006565          465 ASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEM  506 (640)
Q Consensus       465 ~~~l~~le~~le~~re~l~e~nrrleal~~e~~~lqs~id~L  506 (640)
                      ..++..+...++..+..+.........+..++..++..|+.+
T Consensus      1122 e~eie~L~eeLee~~~~~~~le~q~~~L~~ele~L~~~Ieel 1163 (1184)
T 1i84_S         1122 ESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDT 1163 (1184)
T ss_dssp             ------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333444444444444444443

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=97.98  E-value=0.0041  Score=59.02  Aligned_cols=139  Identities=14%  Similarity=0.095  Sum_probs=110.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          265 AEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYL  344 (640)
Q Consensus       265 e~kE~kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L  344 (640)
                      +.-+.+|++...    .+..+......+..++++|..++.++...-..++.|.........+-..|+.++..|...+...
T Consensus        14 e~ad~KyeEvaR----~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEA   89 (155)
T 2efr_A           14 SKNYHLENEVAR----LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEA   89 (155)
T ss_dssp             HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333445555444    7777777777788888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 006565          345 EQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERV  407 (640)
Q Consensus       345 ~ekl~se~er~ee~~~rleeaEee~kea~e~~~~areead~aq~E~~elQr~~~qrlaeIerl  407 (640)
                      ..+.+.+.-....+...++.++.++....+.......+++..-.+...++-....+.++|.|+
T Consensus        90 E~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~~~~  152 (155)
T 2efr_A           90 ETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEVARL  152 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHh
Confidence            888888888888888888888888888888888888888877777777777777777777766

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=97.62  E-value=0.0061  Score=61.77  Aligned_cols=18  Identities=22%  Similarity=0.113  Sum_probs=10.0

Q ss_pred             ccccccccCcchHHhhhhcc
Q 006565          541 GVGSVQEMDTNDKVLRANKR  560 (640)
Q Consensus       541 ~~~sv~d~~~~~~~~r~~kr  560 (640)
                      |.|  =-|.|||.....-++
T Consensus       201 C~G--C~~~lppq~~~~i~~  218 (256)
T 3na7_A          201 CGG--CFIRLNDKIYTEVLT  218 (256)
T ss_dssp             CTT--TCCBCCHHHHHHHHH
T ss_pred             cCC--CCeeeCHHHHHHHHC
Confidence            455  337777766554443

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=97.57  E-value=0.026  Score=57.10  Aligned_cols=45  Identities=11%  Similarity=0.123  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          333 EARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELAD  377 (640)
Q Consensus       333 el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~kea~e~~~  377 (640)
                      +...|..+|..+..+.......+.++..+++.++..+..+...+.
T Consensus        91 E~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~  135 (256)
T 3na7_A           91 ELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEML  135 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444333333344434444444443333333333333

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=97.52  E-value=0.059  Score=51.11  Aligned_cols=59  Identities=20%  Similarity=0.279  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          289 RLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQK  347 (640)
Q Consensus       289 q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ek  347 (640)
                      ..+|.-.+.+....++++..++.+++.....+.++...-..+..+-..+...|..|+.+
T Consensus        27 E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~k   85 (155)
T 2efr_A           27 KKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDK   85 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444444444444444444444444444444444333

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=97.50  E-value=0.023  Score=55.45  Aligned_cols=149  Identities=15%  Similarity=0.142  Sum_probs=89.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          211 LSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRL  290 (640)
Q Consensus       211 ~RVkDel~Ewkrky~~L~~QAKkAeek~a~L~er~~~~~q~r~~a~ree~~s~le~kE~kie~~k~ei~~aEq~la~~q~  290 (640)
                      .++.+++.=|+..|..+..+...++..+...++... +++..+.       .+++..+.....+...+..+...+...+.
T Consensus         6 ~s~~ee~~ywk~~~~~~~q~~~~le~El~EFqesSr-ELE~ELE-------~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~   77 (189)
T 2v71_A            6 SSLKEETAYWKELSMKYKQSFQEARDELVEFQEGSR-ELEAELE-------AQLVQAEQRNRDLQADNQRLKYEVEALKE   77 (189)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            367899999999999999999999988888888873 6665533       33333333333333333333333333333


Q ss_pred             HHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          291 ELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAK  370 (640)
Q Consensus       291 eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~k  370 (640)
                      .+.....   ...+.+..++.++..|......+...+..++..-..|......+...+.-...+|..+-++..-++.++.
T Consensus        78 K~~~~~~---e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~  154 (189)
T 2v71_A           78 KLEHQYA---QSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELD  154 (189)
T ss_dssp             HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2222211   1112256666666666666666666666666666666666666666666666666666666666666654

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=97.19  E-value=0.077  Score=51.85  Aligned_cols=117  Identities=15%  Similarity=0.128  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006565          310 KLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKG  389 (640)
Q Consensus       310 e~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~kea~e~~~~areead~aq~E  389 (640)
                      ..++......+......+..++.++......-.+|+..++..   ++...++...+...+..+..+++..+..+..++.+
T Consensus         9 ~ee~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~e---L~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e   85 (189)
T 2v71_A            9 KEETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQ---LVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQ   85 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444455555555555555555554443332   23344555555555555566666665555555555


Q ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhc
Q 006565          390 ----KSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIR  429 (640)
Q Consensus       390 ----~~elQr~~~qrlaeIerl~~qIE~lEre~e~Le~E~~~l~  429 (640)
                          ...+|..+..+......+...|-.+|+.-++|++......
T Consensus        86 ~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~  129 (189)
T 2v71_A           86 SYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATI  129 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence                4444555555555555555555555555555554443333

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=96.88  E-value=0.38  Score=63.78  Aligned_cols=186  Identities=13%  Similarity=0.129  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHHhHhhHhhHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 006565          165 SDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIV---  241 (640)
Q Consensus       165 ~ew~~kYe~~~~~~k~~~~~~AAGIsklK~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAeek~a~L---  241 (640)
                      .|..+-|-..+++++       ..|..-+.|-..=+.||..|.++.+-.+.++.+-+.++.....+|.+..++...-   
T Consensus      1898 Leli~~y~~ll~~K~-------~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ 1970 (3245)
T 3vkg_A         1898 LDFINQVVLLINEKR-------DQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQA 1970 (3245)
T ss_dssp             HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444555444443       4444445555555666666666666666666666665555544444433222211   


Q ss_pred             -----------HHhhhHHHhhhHHHHHHHHhHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 006565          242 -----------QERTSKEMQQREDVLREEFSSTLAE------KEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEV  304 (640)
Q Consensus       242 -----------~er~~~~~q~r~~a~ree~~s~le~------kE~kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~  304 (640)
                                 +...+ .......+.+.+...+++.      |+.++..+..++..+..++...+..|.+.+.++..+..
T Consensus      1971 ae~~k~~v~~~~~~~~-~~~~ei~~~k~~~e~dL~~A~Pa~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~ 2049 (3245)
T 3vkg_A         1971 AEIKQKDARELQVQLD-VRNKEIAVQKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKE 2049 (3245)
T ss_dssp             HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                       11111 1111111112333333222      33344444444444444444444444555555555544


Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          305 EISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEV  358 (640)
Q Consensus       305 ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~  358 (640)
                      +...+..+...|..+.+..+.++...++-+..|..|..+.++........+..+
T Consensus      2050 ~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~L 2103 (3245)
T 3vkg_A         2050 EYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMSTV 2103 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhc
Confidence            444444445555555555555555555555555555555555555444444333

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=96.67  E-value=0.73  Score=61.19  Aligned_cols=85  Identities=19%  Similarity=0.287  Sum_probs=34.5

Q ss_pred             HHHHHHHHHhHHHHhhhcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          412 ESLERQKTDLTNEVNRIRESELEALSK-VALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAE  490 (640)
Q Consensus       412 E~lEre~e~Le~E~~~l~~sEl~al~k-v~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~l~e~nrrle  490 (640)
                      ..++.++......+...+ .++..+.. +..+....++...+.+.| +.+.+..+.++..-+.+|..+-.+..+=...+.
T Consensus      2017 ~~ae~~l~~~~~~L~~~~-~~L~~le~~l~~L~~~~~~~~~ek~~L-~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~ 2094 (3245)
T 3vkg_A         2017 EQLENAANELKLKQDEIV-ATITALEKSIATYKEEYATLIRETEQI-KTESSKVKNKVDRSIALLDNLNSERGRWEQQSE 2094 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhccccHHHHHH
Confidence            333333333333333333 33333333 444444444444444444 444444444444444444444444444333444


Q ss_pred             HhhHHHHH
Q 006565          491 RLSLEVQS  498 (640)
Q Consensus       491 al~~e~~~  498 (640)
                      .+..++..
T Consensus      2095 ~l~~~~~~ 2102 (3245)
T 3vkg_A         2095 NFNTQMST 2102 (3245)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            44433333

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=96.57  E-value=0.44  Score=45.63  Aligned_cols=69  Identities=22%  Similarity=0.331  Sum_probs=29.8

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
Q 006565          387 RKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSK--------VALLEARVEEREKEIESL  456 (640)
Q Consensus       387 q~E~~elQr~~~qrlaeIerl~~qIE~lEre~e~Le~E~~~l~~sEl~al~k--------v~~lE~~vee~e~eiE~L  456 (640)
                      ++-..++...+.......-.++-.+..++.....|+.++..|. +.++.=..        +.+++.+|..+..+++.+
T Consensus        33 kK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQ-a~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~  109 (168)
T 3o0z_A           33 RKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQ-AILEAERRDRGHDSEMIGDLQARITSLQEEVKHL  109 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344444444444344444444444444444444444444 33332222        444455555555444444

>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1

Probab=96.41  E-value=0.05  Score=51.15  Aligned_cols=134  Identities=22%  Similarity=0.233  Sum_probs=107.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhHHHHHHHHHHHH
Q 006565          194 SRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKE  273 (640)
Q Consensus       194 ~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAeek~a~L~er~~~~~q~r~~a~ree~~s~le~kE~kie~  273 (640)
                      .--.-++.||..+...|.-+...+.|-.+..+.|++..-+..+++..+..++. .+...           .+.-+.+|++
T Consensus        10 eeLer~eerl~~a~~kLeeaek~adE~eR~~k~lE~r~~~deEr~~~lE~qLk-eak~~-----------aeeadrKyeE   77 (147)
T 2b9c_A           10 EELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLK-EAKHI-----------AEDADRKYEE   77 (147)
T ss_dssp             -CCGGGGTTTTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH-----------HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHH-HHHHH-----------HHHHHHhHHH
Confidence            33344567788888888888899999999999999999988888888888774 44433           3444667888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          274 KATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQ  339 (640)
Q Consensus       274 ~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~  339 (640)
                      ...++.-.+..+...-.....++.+|..++.++...-+.|+.|.-....+..+-..|+.++..|..
T Consensus        78 ~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~eekas~rE~~yee~I~~L~~  143 (147)
T 2b9c_A           78 VARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDKVEELLSKNYHLENEVARLKK  143 (147)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTSCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHH
Confidence            888888888888888888888888999999999888888988888888888888888888776643

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=96.36  E-value=0.75  Score=44.07  Aligned_cols=130  Identities=9%  Similarity=0.138  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhHHHHHHHHHHHHHHH
Q 006565          197 TAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKAT  276 (640)
Q Consensus       197 keae~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAeek~a~L~er~~~~~q~r~~a~ree~~s~le~kE~kie~~k~  276 (640)
                      ..++..|..+.+-|-.=-|-..-|+++--.+-..+..++.....|++++. .++..    +..+..++..+...++.-+.
T Consensus         9 ~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~-~L~~~----k~~Leke~~~LQa~L~qEr~   83 (168)
T 3o0z_A            9 SQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNR-ILENS----KSQTDKDYYQLQAILEAERR   83 (168)
T ss_dssp             -CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444444444444444444455555566777763 66666    66666666666666655555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          277 KIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIME  338 (640)
Q Consensus       277 ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~  338 (640)
                      .-.+....++.       ++++|..+..++..+..++..+......+..++..++++...+.
T Consensus        84 ~r~q~se~~~e-------lq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e  138 (168)
T 3o0z_A           84 DRGHDSEMIGD-------LQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLE  138 (168)
T ss_dssp             HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            55544444433       34455555555555555555555555555555555555555555

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=96.23  E-value=0.62  Score=42.53  Aligned_cols=63  Identities=29%  Similarity=0.396  Sum_probs=39.7

Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          303 EVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVA  365 (640)
Q Consensus       303 e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleea  365 (640)
                      +.++.....++..|..++.........++.....+.+++..|...+.++..-+....++|..+
T Consensus        12 e~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L   74 (129)
T 2fxo_A           12 EKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQL   74 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            345555666666666666666666666677777777777777666666555555555554443

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=96.05  E-value=0.66  Score=43.90  Aligned_cols=142  Identities=19%  Similarity=0.209  Sum_probs=84.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          270 EMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYK  349 (640)
Q Consensus       270 kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~  349 (640)
                      ++-.+.+.....+..+...+.++.....+|+.++...    .++..              +..+......++..|...+.
T Consensus         7 KLI~Ain~qs~LeD~L~~~R~el~~~~~ri~~lE~~r----~~~~~--------------l~~~~~~~~~e~~~L~~~l~   68 (154)
T 2ocy_A            7 QLIESVDKQSHLEEQLNKSLKTIASQKAAIENYNQLK----EDYNT--------------LKRELSDRDDEVKRLREDIA   68 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHH----HHHHH--------------HHTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH--------------HHHHHhhhhHHHHHHHHHHH
Confidence            4455556666666666666666666665665555322    22222              22333445555555655665


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhh
Q 006565          350 SEFERFEEVQERCKVAEKEAKKAT-ELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRI  428 (640)
Q Consensus       350 se~er~ee~~~rleeaEee~kea~-e~~~~areead~aq~E~~elQr~~~qrlaeIerl~~qIE~lEre~e~Le~E~~~l  428 (640)
                      .+...-..+.......+.+++... ..++.|...+..++.+-..+++.-.++..++...+..+++++.++..|..=+..+
T Consensus        69 ~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~~~m  148 (154)
T 2ocy_A           69 KENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKVMHSL  148 (154)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            556555555566666666665554 3566677777777777777776666666666666677777776666665444443


Q ss_pred             c
Q 006565          429 R  429 (640)
Q Consensus       429 ~  429 (640)
                      .
T Consensus       149 ~  149 (154)
T 2ocy_A          149 D  149 (154)
T ss_dssp             C
T ss_pred             h
Confidence            3

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=96.01  E-value=0.21  Score=60.31  Aligned_cols=16  Identities=25%  Similarity=0.354  Sum_probs=9.7

Q ss_pred             HHHhcCCCCcchhhHH
Q 006565           18 LRAACHSSDASIDNVV   33 (640)
Q Consensus        18 l~~ac~~~~a~~~~~~   33 (640)
                      |-..|..|.++=+..+
T Consensus       509 Ldee~~~p~~tD~~f~  524 (1080)
T 2dfs_A          509 LDEECKMPKGSDDTWA  524 (1080)
T ss_dssp             HHHHTTSTTCCHHHHH
T ss_pred             ccccccCCCCChHHHH
Confidence            4557777776654443

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=95.66  E-value=0.35  Score=42.49  Aligned_cols=93  Identities=16%  Similarity=0.208  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          219 EWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESK  298 (640)
Q Consensus       219 Ewkrky~~L~~QAKkAeek~a~L~er~~~~~q~r~~a~ree~~s~le~kE~kie~~k~ei~~aEq~la~~q~eL~e~e~k  298 (640)
                      =|++|+..|..++..|.+++..++... +.++.+    ..++..++.-+..++..+..++..++..+...+..|.+.+..
T Consensus         6 aIKkKm~~lk~e~e~a~drae~~e~~~-k~~e~~----~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~   80 (101)
T 3u1c_A            6 AIKKKMQMLKLDKENALDRAEQAEADK-KAAEER----SKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEEN   80 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH----HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356777777777777777777666666 366555    555555555555555555555555555555555555444444


Q ss_pred             HhhHHHHHhhHHHHHHHH
Q 006565          299 MRSYEVEISSQKLETKEL  316 (640)
Q Consensus       299 Ik~~e~ei~~le~el~~L  316 (640)
                      ....+.++..+..+|..|
T Consensus        81 ~~~aE~ev~~L~Rriqll   98 (101)
T 3u1c_A           81 AAKAESEVASLNRRIQLV   98 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            444444444444444443

>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}

Probab=95.63  E-value=1.3  Score=40.69  Aligned_cols=140  Identities=21%  Similarity=0.263  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcHHHHHH
Q 006565          356 EEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEA  435 (640)
Q Consensus       356 ee~~~rleeaEee~kea~e~~~~areead~aq~E~~elQr~~~qrlaeIerl~~qIE~lEre~e~Le~E~~~l~~sEl~a  435 (640)
                      +++...+++.+.++.....-...-+..+|..++....-|+.+..+.++++-+++.++..+..+.+...+.....    =.
T Consensus        21 ~s~~~eleEnqeEL~iVgkML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~Lkrn~~qQnQQS----lD   96 (167)
T 4gkw_A           21 ESLQKQLEENQEELEIVGNMLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLLKRNSQQQNQQS----LD   96 (167)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHhHhh----hh
Confidence            33444444444555555555555566667777777777777777777777777777776666544432222111    12


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 006565          436 LSKVALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQ  507 (640)
Q Consensus       436 l~kv~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~l~e~nrrleal~~e~~~lqs~id~Le  507 (640)
                      +.++.+|++.+.+.+.-++.|        -.||-.|..+|+.++-...+.-.--+.++.+-..++..|..+-
T Consensus        97 iRKLrELEADLKEKDsMVe~L--------T~TiG~LrKELEdEklK~~E~MdSFE~LkvENE~vkerl~mYR  160 (167)
T 4gkw_A           97 MRKLGELEADLKEKDSMVESL--------TETIGILRKELENEKLKAAENMDSFEKLSMENENLKEKIAHYR  160 (167)
T ss_dssp             HHHTHHHHHTHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhHHhhhhHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHH
Confidence            444788888888888888888        7888888898888888888877778888888888888887763

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=95.38  E-value=0.42  Score=41.84  Aligned_cols=93  Identities=16%  Similarity=0.250  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          219 EWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESK  298 (640)
Q Consensus       219 Ewkrky~~L~~QAKkAeek~a~L~er~~~~~q~r~~a~ree~~s~le~kE~kie~~k~ei~~aEq~la~~q~eL~e~e~k  298 (640)
                      =|++|+..|..++..|.+++..++... +.++.+    ..++...+.-+..++..+..++..+...+...+..|...+..
T Consensus         6 ~iKkKm~~lk~e~e~a~d~ae~~e~~~-k~~e~~----~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~   80 (101)
T 3u59_A            6 AIKKKMQMLKLDKENAIDRAEQAEADK-KQAEDR----CKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKK   80 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH----HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            367777777777777777777777776 366666    555555555555555555555555555555555555555555


Q ss_pred             HhhHHHHHhhHHHHHHHH
Q 006565          299 MRSYEVEISSQKLETKEL  316 (640)
Q Consensus       299 Ik~~e~ei~~le~el~~L  316 (640)
                      ....+.+...+..+|..|
T Consensus        81 ~~~AE~evasLnRriqll   98 (101)
T 3u59_A           81 ATDAEAEVASLNRRIQLV   98 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            555555555555554443

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=95.27  E-value=2.1  Score=40.55  Aligned_cols=82  Identities=18%  Similarity=0.271  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 006565          400 RMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSK--VALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLES  477 (640)
Q Consensus       400 rlaeIerl~~qIE~lEre~e~Le~E~~~l~~sEl~al~k--v~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~  477 (640)
                      ...++.++...+..-.......+..+.++. .|++.+.-  +.+....|..-+.+-..+ ...+.++..++...+..|+.
T Consensus        56 ~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie-~ElEeLTasLFeEAN~MVa~ar~~~~~~-e~r~~~L~~ql~e~~~~l~~  133 (154)
T 2ocy_A           56 RDDEVKRLREDIAKENELRTKAEEEADKLN-KEVEDLTASLFDEANNMVADARKEKYAI-EILNKRLTEQLREKDTLLDT  133 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence            444555555555555555666666677777 77777777  888888888877776666 66666666666666655444


Q ss_pred             HHHHHH
Q 006565          478 ERRSRA  483 (640)
Q Consensus       478 ~re~l~  483 (640)
                      +..++.
T Consensus       134 lq~ql~  139 (154)
T 2ocy_A          134 LTLQLK  139 (154)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444333

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=95.14  E-value=0.42  Score=57.67  Aligned_cols=24  Identities=21%  Similarity=0.344  Sum_probs=11.0

Q ss_pred             HHHHHHHHhHHHHhhhcHHHHHHHH
Q 006565          413 SLERQKTDLTNEVNRIRESELEALS  437 (640)
Q Consensus       413 ~lEre~e~Le~E~~~l~~sEl~al~  437 (640)
                      +++..+.+|+.+...|+ ++++.++
T Consensus      1020 ~L~~kv~~L~~e~~~L~-qq~~~l~ 1043 (1080)
T 2dfs_A         1020 ETEQLVSELKEQNTLLK-TEKEELN 1043 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHH
Confidence            34444444444444444 4444444

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=94.97  E-value=2.1  Score=38.99  Aligned_cols=99  Identities=19%  Similarity=0.231  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          281 AEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQE  360 (640)
Q Consensus       281 aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~  360 (640)
                      .+..+..+...+...+...+.++.....+..+...|...+.+-..-+...+.....|......|+.++.....++++...
T Consensus        18 ~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee   97 (129)
T 2fxo_A           18 MKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEE   97 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444444445555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 006565          361 RCKVAEKEAKKATELADRE  379 (640)
Q Consensus       361 rleeaEee~kea~e~~~~a  379 (640)
                      ....+....+.+...+...
T Consensus        98 ~~~~L~~~kkkle~e~~~L  116 (129)
T 2fxo_A           98 MNAELTAKKRKLEDECSEL  116 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            5544444444444333333

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=94.63  E-value=1.4  Score=38.56  Aligned_cols=29  Identities=21%  Similarity=0.141  Sum_probs=10.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          316 LSEKLEAVNAKAQSFEREARIMEQDKVYL  344 (640)
Q Consensus       316 L~ekle~~~~eies~e~el~~L~~ei~~L  344 (640)
                      |....+.+..+++.++.++..+......+
T Consensus        14 lk~e~e~a~d~ae~~e~~~k~~e~~~~~~   42 (101)
T 3u59_A           14 LKLDKENAIDRAEQAEADKKQAEDRCKQL   42 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33333333333333333333333333333

>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1

Probab=94.49  E-value=0.22  Score=46.82  Aligned_cols=76  Identities=18%  Similarity=0.233  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 006565          201 ARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEH  280 (640)
Q Consensus       201 ~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAeek~a~L~er~~~~~q~r~~a~ree~~s~le~kE~kie~~k~ei~~  280 (640)
                      +|+.-+.++|+++..-+..--.++..+..-|.-.+-...+|+++.. .-..+           +..++.++++++.-...
T Consensus         3 Rri~llEeeLer~eerl~~a~~kLeeaek~adE~eR~~k~lE~r~~-~deEr-----------~~~lE~qLkeak~~aee   70 (147)
T 2b9c_A            3 RRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQ-KDEEK-----------MEIQEIQLKEAKHIAED   70 (147)
T ss_dssp             --------CCGGGGTTTTHHHHHHHHHHHHHHHHTHHHHHHHHHHH-HHHHH-----------HHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-ccHHH-----------HHHHHHHHHHHHHHHHH
Confidence            3555566666676666666666666665544444445555665553 33333           33444444444444444


Q ss_pred             HHHHHHHH
Q 006565          281 AEQCLTTL  288 (640)
Q Consensus       281 aEq~la~~  288 (640)
                      ++.++...
T Consensus        71 adrKyeE~   78 (147)
T 2b9c_A           71 ADRKYEEV   78 (147)
T ss_dssp             HHHHHHHH
T ss_pred             HHHhHHHH
Confidence            44444433

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=94.23  E-value=0.99  Score=41.07  Aligned_cols=85  Identities=16%  Similarity=0.203  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 006565          203 LAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAE  282 (640)
Q Consensus       203 L~at~enL~RVkDel~Ewkrky~~L~~QAKkAeek~a~L~er~~~~~q~r~~a~ree~~s~le~kE~kie~~k~ei~~aE  282 (640)
                      -..-...+..++.++.|.++++..|..+........++|+..+. .++.+-+.....+...+..++..+..++.++..--
T Consensus        24 ~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~-e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql  102 (129)
T 3tnu_B           24 AGRHGDDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIA-DAEQRGELALKDARNKLAELEEALQKAKQDMARLL  102 (129)
T ss_dssp             ----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            33444677888999999999999999988888888888888885 88888777788888888888888888887776655


Q ss_pred             HHHHHH
Q 006565          283 QCLTTL  288 (640)
Q Consensus       283 q~la~~  288 (640)
                      +.+..+
T Consensus       103 ~EYq~L  108 (129)
T 3tnu_B          103 REYQEL  108 (129)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555443

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=93.92  E-value=0.81  Score=41.80  Aligned_cols=86  Identities=19%  Similarity=0.217  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 006565          202 RLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHA  281 (640)
Q Consensus       202 RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAeek~a~L~er~~~~~q~r~~a~ree~~s~le~kE~kie~~k~ei~~a  281 (640)
                      --..-...+..++.++.|.++++..|..+........++|+..+. .++.+-+.....+...+..++..+..++.++..-
T Consensus        25 ~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~-e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~q  103 (131)
T 3tnu_A           25 EVATNSELVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLE-ETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQ  103 (131)
T ss_dssp             ----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333445678888999999999999999988888888888888885 8888877778888888888888888888877665


Q ss_pred             HHHHHHH
Q 006565          282 EQCLTTL  288 (640)
Q Consensus       282 Eq~la~~  288 (640)
                      -+.+..+
T Consensus       104 l~EYq~L  110 (131)
T 3tnu_A          104 NQEYKIL  110 (131)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5555444

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=93.66  E-value=3  Score=47.16  Aligned_cols=58  Identities=22%  Similarity=0.265  Sum_probs=49.4

Q ss_pred             hhhhhHHHHHHHHHHHH-----hcCCCCcchhhHHHHHHHHHHhhhhcc-cCCchHHHHHHHHHH
Q 006565            4 DIRCSSAIQSMERKLRA-----ACHSSDASIDNVVKVLDGLISEYETSC-HGPGKWQKLATFLQQ   62 (640)
Q Consensus         4 ~~~c~~~~~~me~~l~~-----ac~~~~a~~~~~~~~l~~~l~~y~~s~-~G~g~~~k~~~~L~~   62 (640)
                      ...|.+.|+.|-..|..     .|+.|+. ++.+++.++.++..|+..+ -||.+|.-|..||+.
T Consensus       404 ~~~C~~ll~~l~~~l~~~i~~g~~~~p~g-~~~~~~~~~~~~~~Y~~~~~kg~~~~~vl~~fl~~  467 (592)
T 1f5n_A          404 SDRCSGLLQVIFSPLEEEVKAGIYSKPGG-YRLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKS  467 (592)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTTSSTTH-HHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCcCCCCc-HHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence            45799999988777665     6777875 8899999999999999999 599999999888874

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=93.60  E-value=1.3  Score=48.95  Aligned_cols=28  Identities=25%  Similarity=0.289  Sum_probs=11.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          265 AEKEEEMKEKATKIEHAEQCLTTLRLEL  292 (640)
Q Consensus       265 e~kE~kie~~k~ei~~aEq~la~~q~eL  292 (640)
                      ..++.++..++.++...++.++.++.++
T Consensus       459 ~~~~~~i~~l~~~~~~~~~~l~~~~~~i  486 (597)
T 3oja_B          459 NELRAEVQQLTNEQIQQEQLLQGLHAEI  486 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3333444444444444444444444443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=93.22  E-value=1.7  Score=47.98  Aligned_cols=34  Identities=12%  Similarity=0.139  Sum_probs=13.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          265 AEKEEEMKEKATKIEHAEQCLTTLRLELKAAESK  298 (640)
Q Consensus       265 e~kE~kie~~k~ei~~aEq~la~~q~eL~e~e~k  298 (640)
                      +.++.++.....++...+.++....+.+.....+
T Consensus       452 e~l~~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~  485 (597)
T 3oja_B          452 EQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAE  485 (597)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334344444444444444444444444333333

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=92.06  E-value=4.5  Score=35.43  Aligned_cols=83  Identities=16%  Similarity=0.256  Sum_probs=54.7

Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhHHH
Q 006565          386 ARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSK--VALLEARVEEREKEIESLLESNNEQ  463 (640)
Q Consensus       386 aq~E~~elQr~~~qrlaeIerl~~qIE~lEre~e~Le~E~~~l~~sEl~al~k--v~~lE~~vee~e~eiE~L~~~~~eq  463 (640)
                      ++.+...++........++.++...+..-.......+..+..+. .|++.|+-  +.+....|..-+.+-..+ ...+.+
T Consensus        10 lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie-~ElEeLTasLFeEAN~MVa~ar~e~~~~-e~kn~~   87 (97)
T 2eqb_B           10 LKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLN-KEVEDLTASLFDEANNMVADARKEKYAI-EILNKR   87 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence            34444444444444555555555555666666666666677777 77777777  888888888887777777 777777


Q ss_pred             HHHHHHH
Q 006565          464 RASTVKK  470 (640)
Q Consensus       464 ~~~~l~~  470 (640)
                      +..+|..
T Consensus        88 L~~qL~d   94 (97)
T 2eqb_B           88 LTEQLRE   94 (97)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhh
Confidence            7777754

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}

Probab=91.98  E-value=1.6  Score=37.24  Aligned_cols=77  Identities=18%  Similarity=0.277  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 006565          404 IERVQRQIESLERQKTDLTNEVNRIRESELEALSK-VALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSR  482 (640)
Q Consensus       404 Ierl~~qIE~lEre~e~Le~E~~~l~~sEl~al~k-v~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~l  482 (640)
                      |..|+++|+.+..+..++.-++.+++ ...+.|.. +..--..-...+.++..| .+......-.--.|+..++++.+.+
T Consensus         2 i~eLr~qi~~l~~e~~~l~~e~dn~~-~~~edfk~KyE~E~~~R~~~E~d~~~L-rkdvD~a~l~r~dLE~kvesL~eEl   79 (86)
T 3swk_A            2 MRELRRQVDQLTNDKARVEVERDNLA-EDIMRLREKLQEEMLQREEAENTLQSF-RQDVDNASLARLDLERKVESLQEEI   79 (86)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            56677777777777777777777777 66666655 555444555555555555 5555444444444444444444433

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=91.80  E-value=1.7  Score=37.00  Aligned_cols=72  Identities=19%  Similarity=0.262  Sum_probs=52.5

Q ss_pred             HHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          291 ELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERC  362 (640)
Q Consensus       291 eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rl  362 (640)
                      -|..++.||......|..++-++..|.++...+..+.+........|..++..|.+....-..++..+-.++
T Consensus         7 lleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~   78 (81)
T 2jee_A            7 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRM   78 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            357788888888888888888888888888888888888666666666666666555555555555544443

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=91.04  E-value=8.3  Score=34.54  Aligned_cols=103  Identities=18%  Similarity=0.218  Sum_probs=64.8

Q ss_pred             HHhHHhhHHhHHhhhhhhHHHHHHHHHHHhHhhHhhHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          147 REKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGV  226 (640)
Q Consensus       147 ee~~~~l~k~le~~~~e~~ew~~kYe~~~~~~k~~~~~~AAGIsklK~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~  226 (640)
                      |-++.-|.........+.-+|+.||.++-++.-.....+=..              +..++..-+...--+.+++-.-|-
T Consensus         2 Ek~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~E--------------l~~lr~~~~~l~~~iReLEq~NDD   67 (111)
T 2v66_B            2 EQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDD--------------LSQTRAIKEQLHKYVRELEQANDD   67 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHhchH
Confidence            345666777777888889999999999776554333333333              333333344444555666777777


Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhHHHHHHH
Q 006565          227 AVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKE  268 (640)
Q Consensus       227 L~~QAKkAeek~a~L~er~~~~~q~r~~a~ree~~s~le~kE  268 (640)
                      |++++..+-.-+..++++.+ .+=++    .+=+..++.+++
T Consensus        68 LER~~R~t~~SLeD~E~k~n-~aiEr----nalLE~El~EKe  104 (111)
T 2v66_B           68 LERAKRATIVSLEDFEQRLN-QAIER----NAFLESELDEKE  104 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-HHHHH----HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHH-HHHHH----HHHHHHHHHHHH
Confidence            77777777777777888886 66666    444444444443

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=90.04  E-value=8.5  Score=33.69  Aligned_cols=48  Identities=17%  Similarity=0.186  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          321 EAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKE  368 (640)
Q Consensus       321 e~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee  368 (640)
                      +.+..++..++.+......++..|...+..+...-..+......++.+
T Consensus         8 e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~E   55 (97)
T 2eqb_B            8 NQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKE   55 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444444444333333333333333333333333

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=90.03  E-value=7.4  Score=35.23  Aligned_cols=44  Identities=18%  Similarity=0.265  Sum_probs=23.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHH
Q 006565          394 ENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSK  438 (640)
Q Consensus       394 Qr~~~qrlaeIerl~~qIE~lEre~e~Le~E~~~l~~sEl~al~k  438 (640)
                      +..+..+.+++..++..+.+.-++...|-+-+.+|. .|+.+..+
T Consensus        81 q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Ld-~EIatYRk  124 (129)
T 3tnu_B           81 RNKLAELEEALQKAKQDMARLLREYQELMNTKLALD-VEIATYRK  124 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            333444445555555555555556666666666666 55554433

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=89.37  E-value=6.6  Score=35.70  Aligned_cols=44  Identities=9%  Similarity=0.194  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHH
Q 006565          394 ENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSK  438 (640)
Q Consensus       394 Qr~~~qrlaeIerl~~qIE~lEre~e~Le~E~~~l~~sEl~al~k  438 (640)
                      +..+..+.+++..++..+.+.-++...|-+-+.+|. .|+.+..+
T Consensus        83 q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~Ld-~EIatYRk  126 (131)
T 3tnu_A           83 QEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLE-QEIATYRR  126 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            444444555555555555555666666666666666 55555443

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=89.15  E-value=12  Score=33.51  Aligned_cols=34  Identities=21%  Similarity=0.132  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          200 EARLAAAREQALSAQEEVEEWKRKYGVAVREAKA  233 (640)
Q Consensus       200 e~RL~at~enL~RVkDel~Ewkrky~~L~~QAKk  233 (640)
                      +.|.........+..-++.+|+.||....+++-.
T Consensus         2 Ek~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~   35 (111)
T 2v66_B            2 EQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYK   35 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5677888888999999999999999997775443

>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1

Probab=87.93  E-value=0.6  Score=36.20  Aligned_cols=41  Identities=20%  Similarity=0.329  Sum_probs=32.8

Q ss_pred             ccCccchhHhhHHHHHHHHHhcCchhhhhhccCCChHHHHHHHHHhh
Q 006565          590 QSNQEDYTKFTVQKLKQELTKHNFGAELLQLRNPNKKEILALYEKCI  636 (640)
Q Consensus       590 ~~~~~~y~k~t~~kl~~el~~~~~g~~l~~l~~~~k~~i~aly~~~~  636 (640)
                      .+...||.++||..||.+|..+|+.      -+.+|.|+|+--..++
T Consensus         4 ~~s~~~~~klkV~eLK~eLk~RgL~------~~G~Ka~Li~RL~~~~   44 (50)
T 1zrj_A            4 GSSGMDVRRLKVNELREELQRRGLD------TRGLKAELAERLQAAL   44 (50)
T ss_dssp             SSCCCCGGGSCHHHHHHHHHHTTCC------CCSCHHHHHHHHHHHH
T ss_pred             ccCcCCHHHCcHHHHHHHHHHcCCC------CCCcHHHHHHHHHHHH
Confidence            3567799999999999999999963      2678999887665553

>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=85.85  E-value=1.8  Score=40.08  Aligned_cols=86  Identities=21%  Similarity=0.171  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          336 IMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKAT-ELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESL  414 (640)
Q Consensus       336 ~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~kea~-e~~~~areead~aq~E~~elQr~~~qrlaeIerl~~qIE~l  414 (640)
                      ....++..|...+..+...-..+......++.++...+ ..++.|...+..++.+-..+++.-.++..++...+..++++
T Consensus        43 ~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~ll~~l  122 (135)
T 2e7s_A           43 DRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLREKDMLLDTL  122 (135)
T ss_dssp             THHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHHCC---
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444444333333333333333333333433332 23444555555555555555555555555555555555555


Q ss_pred             HHHHHHh
Q 006565          415 ERQKTDL  421 (640)
Q Consensus       415 Ere~e~L  421 (640)
                      +.++..|
T Consensus       123 q~QL~~L  129 (135)
T 2e7s_A          123 TLQLKNL  129 (135)
T ss_dssp             -------
T ss_pred             HHHHHHH
Confidence            5444443

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=85.67  E-value=14  Score=31.41  Aligned_cols=70  Identities=17%  Similarity=0.204  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 006565          439 VALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQE  509 (640)
Q Consensus       439 v~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~l~e~nrrleal~~e~~~lqs~id~Leg~  509 (640)
                      +..|+.+|...-..|.-| +..+++++.+-..+..+.+..+.......+....++.++..-++.|+.|=|-
T Consensus         8 leqLE~KIq~avdtI~lL-qmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk   77 (81)
T 2jee_A            8 FEKLEAKVQQAIDTITLL-QMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGR   77 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            566777777777777654 7777777777777777777666666666666777777777777777666443

>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=84.96  E-value=1.2  Score=41.17  Aligned_cols=79  Identities=16%  Similarity=0.248  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 006565          404 IERVQRQIESLERQKTDLTNEVNRIRESELEALSK--VALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRS  481 (640)
Q Consensus       404 Ierl~~qIE~lEre~e~Le~E~~~l~~sEl~al~k--v~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~  481 (640)
                      +.++...+..-.......+..+..+. .|++.+.-  +.+....|..-+.+-..+ ...+.++..++...+..|++...+
T Consensus        48 ~~~L~~~l~eE~~~R~~aE~~~~~ie-~ElE~LTasLFeEAN~MVa~ar~~~~~~-e~r~~~L~~ql~e~e~ll~~lq~Q  125 (135)
T 2e7s_A           48 VKRLREDIAKENELRTKAEEEADKLN-KEVEDLTASLFDEANNLVADARMEKYAI-EILNKRLTEQLREKDMLLDTLTLQ  125 (135)
T ss_dssp             HHTHHHHHHHTTSHHHHHHHTTHHHH-HHHHHHHHHHHHHHHHHHHHTTHHHHHH-HHHHHHHHHTTTHHHHCC------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444555566666 66666666  777777787777666666 777777777776666655555444


Q ss_pred             HHH
Q 006565          482 RAA  484 (640)
Q Consensus       482 l~e  484 (640)
                      +..
T Consensus       126 L~~  128 (135)
T 2e7s_A          126 LKN  128 (135)
T ss_dssp             ---
T ss_pred             HHH
Confidence            443

>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A

Probab=84.74  E-value=0.96  Score=35.17  Aligned_cols=38  Identities=34%  Similarity=0.362  Sum_probs=30.4

Q ss_pred             ccchhHhhHHHHHHHHHhcCchhhhhhccCCChHHHHHHHHHhh
Q 006565          593 QEDYTKFTVQKLKQELTKHNFGAELLQLRNPNKKEILALYEKCI  636 (640)
Q Consensus       593 ~~~y~k~t~~kl~~el~~~~~g~~l~~l~~~~k~~i~aly~~~~  636 (640)
                      +.||.++||..||.+|..+|+-      -+-+|.|+|+--..+.
T Consensus         2 m~~~~kltV~eLK~~Lk~RGL~------~~G~KadLieRL~~~~   39 (51)
T 1h1j_S            2 SADYSSLTVVQLKDLLTKRNLS------VGGLKNELVQRLIKDD   39 (51)
T ss_dssp             CCSGGGCCHHHHHHHHHHTTCC------CCSSHHHHHHHHHHHH
T ss_pred             cchHHHCcHHHHHHHHHHcCCC------CCCcHHHHHHHHHHHH
Confidence            4699999999999999999954      2567888887665554

>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A

Probab=84.23  E-value=3.3  Score=37.58  Aligned_cols=91  Identities=20%  Similarity=0.231  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHHHhHHHHhhhcHHH----HHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH---HH
Q 006565          409 RQIESLERQKTDLTNEVNRIRESE----LEALSK-VALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESE---RR  480 (640)
Q Consensus       409 ~qIE~lEre~e~Le~E~~~l~~sE----l~al~k-v~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~---re  480 (640)
                      ..|+.|.++++.|..++.++. .|    +..+.. |..|++.+++.+.....+ ..+++.+...+..+......-   ..
T Consensus        15 ~~Ie~Lkreie~lk~ele~l~-~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a-~~e~e~Lr~e~~~l~~~~~~~~~~q~   92 (120)
T 3i00_A           15 HLIERLYREISGLKAQLENMK-TESQRVVLQLKGHVSELEADLAEQQHLRQQA-ADDCEFLRAELDELRRQREDTEKAQR   92 (120)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHTTCC-------
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            455666666666666666655 44    444555 666777666666665555 555555555555443222111   11


Q ss_pred             HHHHHHHHHHHhhHHHHHHHH
Q 006565          481 SRAAANAMAERLSLEVQSAQA  501 (640)
Q Consensus       481 ~l~e~nrrleal~~e~~~lqs  501 (640)
                      .+.++..++.+-...++-+++
T Consensus        93 ~~~e~E~kAqa~Eerf~KLKe  113 (120)
T 3i00_A           93 SLSEIERKAQANEQRYSKLKE  113 (120)
T ss_dssp             ---------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            234444455444444444443

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=84.22  E-value=8  Score=42.92  Aligned_cols=25  Identities=12%  Similarity=0.130  Sum_probs=11.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          311 LETKELSEKLEAVNAKAQSFEREAR  335 (640)
Q Consensus       311 ~el~~L~ekle~~~~eies~e~el~  335 (640)
                      .+|+.|...++.+..+|+.+|..|.
T Consensus       131 snIrvLQsnLedq~~kIQRLEvDId  155 (562)
T 3ghg_A          131 QHIQLLQKNVRAQLVDMKRLEVDID  155 (562)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444443

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=84.20  E-value=21  Score=31.90  Aligned_cols=29  Identities=7%  Similarity=0.173  Sum_probs=12.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          313 TKELSEKLEAVNAKAQSFEREARIMEQDK  341 (640)
Q Consensus       313 l~~L~ekle~~~~eies~e~el~~L~~ei  341 (640)
                      +..|..++..++.-+.....++..++.++
T Consensus        26 i~~L~~~L~~AEeaL~~Kq~~idelk~ei   54 (110)
T 2v4h_A           26 LEDLRQQLQQAEEALVAKQELIDKLKEEA   54 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444444444444433

>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A

Probab=83.84  E-value=1.5  Score=49.27  Aligned_cols=112  Identities=11%  Similarity=0.159  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          285 LTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKV  364 (640)
Q Consensus       285 la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rlee  364 (640)
                      ...+...|...+...+.....+...+..+..|.++...++.+...++.+...+.+++..|...-....+.-..+..++.+
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~~~~~~~~e~~~l~~~~~~  416 (575)
T 2i1j_A          337 QQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEETKNMEAAERQKLEDEIRA  416 (575)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHC----------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            33444445555555555555555555666666666666666667777777777777776655544444444445555566


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 006565          365 AEKEAKKATELADRERAEAAAARKGKSEFENL  396 (640)
Q Consensus       365 aEee~kea~e~~~~areead~aq~E~~elQr~  396 (640)
                      ++..+....++.+....++...+.++..++..
T Consensus       417 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~a~~~  448 (575)
T 2i1j_A          417 KQEEVSRIQQEVELKDSETRRLQEEVEDARRK  448 (575)
T ss_dssp             -------------------------CHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666666666655555555555554443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=82.17  E-value=29  Score=37.22  Aligned_cols=29  Identities=28%  Similarity=0.237  Sum_probs=12.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006565          465 ASTVKKLEDLLESERRSRAAANAMAERLS  493 (640)
Q Consensus       465 ~~~l~~le~~le~~re~l~e~nrrleal~  493 (640)
                      .++-..++.++++...++..++.++-++-
T Consensus       448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  476 (487)
T 3oja_A          448 AEENARLKKLNGEADLALASANATLQELV  476 (487)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhhhhhhhhhhhhhHhcccHHHHHH
Confidence            33333344444444444444444444333

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=81.99  E-value=13  Score=34.22  Aligned_cols=57  Identities=23%  Similarity=0.252  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHH
Q 006565          270 EMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAK  326 (640)
Q Consensus       270 kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~e  326 (640)
                      ++..+..++...++++..+..++..+..++.....++..++.++..|..+...++++
T Consensus        76 ~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~  132 (138)
T 3hnw_A           76 MADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETE  132 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444444444444444444444444444444444433

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}

Probab=80.95  E-value=27  Score=30.23  Aligned_cols=35  Identities=23%  Similarity=0.284  Sum_probs=18.9

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006565          387 RKGKSEFENLAMERMAVIERVQRQIESLERQKTDL  421 (640)
Q Consensus       387 q~E~~elQr~~~qrlaeIerl~~qIE~lEre~e~L  421 (640)
                      -.+.+..+...++...+...+.+++.-...+++.|
T Consensus        59 w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdkL   93 (96)
T 3q8t_A           59 QREYSEFKRQQLELDDELKSVENQMRYAQMQLDKL   93 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44455555555555555555555555555555544

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=80.87  E-value=20  Score=32.00  Aligned_cols=43  Identities=14%  Similarity=0.176  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 006565          463 QRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDE  505 (640)
Q Consensus       463 q~~~~l~~le~~le~~re~l~e~nrrleal~~e~~~lqs~id~  505 (640)
                      -++.++..+..--..+|.+...++.+.+.+..++..+|..+..
T Consensus        66 vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~~  108 (110)
T 2v4h_A           66 VLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNK  108 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHHh
Confidence            3466666667777777777777777777777777777776544

>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A

Probab=80.33  E-value=1.6  Score=49.08  Aligned_cols=111  Identities=14%  Similarity=0.276  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          271 MKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKS  350 (640)
Q Consensus       271 ie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~s  350 (640)
                      ..++...+.+.+.+....+.+|...+..+..++.+...++.+...|..+-..+......+......-..+...|..++..
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~~~~~~~~e~~~l~~~~~~  416 (575)
T 2i1j_A          337 QQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEETKNMEAAERQKLEDEIRA  416 (575)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHC----------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            34555677788888888889999999999999999999999999999999999999999888888888888888766666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565          351 EFERFEEVQERCKVAEKEAKKATELADRERA  381 (640)
Q Consensus       351 e~er~ee~~~rleeaEee~kea~e~~~~are  381 (640)
                      .......+....+..+.+......++..|+.
T Consensus       417 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~a~~  447 (575)
T 2i1j_A          417 KQEEVSRIQQEVELKDSETRRLQEEVEDARR  447 (575)
T ss_dssp             -------------------------CHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5554444444444433444444444433333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	640
d1f5na1	300	Interferon-induced guanylate-binding protein 1 (GB	96.55
d1f5na1	300	Interferon-induced guanylate-binding protein 1 (GB	92.54
d1h1js_	44	S/mar DNA-binding protein Tho1 {Baker's yeast (Sac	86.68

>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.55  E-value=0.02  Score=54.90  Aligned_cols=59  Identities=24%  Similarity=0.307  Sum_probs=46.9

Q ss_pred             hhhhhHHH----HHHHHHHHHhcCCCCcchhhHHHHHHHHHHhhhhcccCCchHHHHHHHHHHhhh
Q 006565            4 DIRCSSAI----QSMERKLRAACHSSDASIDNVVKVLDGLISEYETSCHGPGKWQKLATFLQQSSE   65 (640)
Q Consensus         4 ~~~c~~~~----~~me~~l~~ac~~~~a~~~~~~~~l~~~l~~y~~s~~G~g~~~k~~~~L~~~l~   65 (640)
                      .-.|...+    +.|+.+++..|++|++.++.++..++.+...|+..   |++|.+...+++.++.
T Consensus       121 ~~~c~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~k~~~~~~~~~~~~~  183 (300)
T d1f5na1         121 SDRCSGLLQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKYYEE---PRKGIQAEEILQTYLK  183 (300)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTTSSTTHHHHHHHHHHHHHHHHHHS---SCCCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHHHHh---hhhhHHHHHHHHHHHH
Confidence            44676555    67999999999999999999999999999999987   4555555555555554

>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.54  E-value=4.1  Score=37.87  Aligned_cols=104  Identities=15%  Similarity=0.116  Sum_probs=74.4

Q ss_pred             hhhhhHHHHHH----HHHHHHhcCCCCcchhhH----HHHHHHHHHhhhhcccCCchHHHHHHHHHHhhhchHHHHHHHH
Q 006565            4 DIRCSSAIQSM----ERKLRAACHSSDASIDNV----VKVLDGLISEYETSCHGPGKWQKLATFLQQSSEGPILDLVKRL   75 (640)
Q Consensus         4 ~~~c~~~~~~m----e~~l~~ac~~~~a~~~~~----~~~l~~~l~~y~~s~~G~g~~~k~~~~L~~~l~~~~~d~~~~~   75 (640)
                      ...|..||+.-    ...+..-|..|..+.+.+    -.+.+.++..|...++|... ++|..-|...+.+.|.++.+.-
T Consensus        38 ~~e~~~a~e~a~~~Y~~~m~~~~~~~~~~~eel~~~h~~~~~~a~~~f~~~~~~~~~-~~~~~~L~~~l~~~~~~~~~~N  116 (300)
T d1f5na1          38 QIENSAAVQKAIAHYEQQMGQKVQLPTESLQELLDLHRDSEREAIEVFIRSSFKDVD-HLFQKELAAQLEKKRDDFCKQN  116 (300)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCSSCSSHHHHHHHHHHHHHHHHHHHHHHCCCCGG-GHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHhcchhhH-HHHHHHHHHHHHHHHHHHHHHH
Confidence            44577665543    555555677887776654    45677888899888877554 3788888888999999886543


Q ss_pred             H------------hHHHhHHHHHHhhhcCchhHHHHHHHHHHhhH
Q 006565           76 I------------DQIGSERSSLMLKYRSIEDNMKLLKKQLEDSE  108 (640)
Q Consensus        76 ~------------~~i~~~~~~l~~~c~s~~~k~~~~~k~le~~~  108 (640)
                      .            .....++.++...|.+++..+..+.+.++.+.
T Consensus       117 e~~s~~~c~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (300)
T d1f5na1         117 QEASSDRCSGLLQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLK  161 (300)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTTTSSTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHH
Confidence            2            34456778888889999988888888776544

>d1h1js_ a.140.2.1 (S:) S/mar DNA-binding protein Tho1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: LEM/SAP HeH motif
superfamily: SAP domain
family: SAP domain
domain: S/mar DNA-binding protein Tho1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.68  E-value=0.35  Score=34.81  Aligned_cols=38  Identities=34%  Similarity=0.362  Sum_probs=30.8

Q ss_pred             ccchhHhhHHHHHHHHHhcCchhhhhhccCCChHHHHHHHHHhh
Q 006565          593 QEDYTKFTVQKLKQELTKHNFGAELLQLRNPNKKEILALYEKCI  636 (640)
Q Consensus       593 ~~~y~k~t~~kl~~el~~~~~g~~l~~l~~~~k~~i~aly~~~~  636 (640)
                      +.||.++||..||.+|...|.-      -+-+|-|+|+--+.|.
T Consensus         2 ~~dy~~ltv~eLK~~lk~rgL~------~sG~Ka~Li~RL~~~d   39 (44)
T d1h1js_           2 SADYSSLTVVQLKDLLTKRNLS------VGGLKNELVQRLIKDD   39 (44)
T ss_dssp             CCSGGGCCHHHHHHHHHHTTCC------CCSSHHHHHHHHHHHH
T ss_pred             CCcHHHCcHHHHHHHHHHCCCC------CCCCHHHHHHHHHHHh
Confidence            5799999999999999999843      2678888888666553