Citrus Sinensis ID: 006566

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640

MATGTLPASFPGLKSRDSGLGFAKSVDFVRVCDFRKFKSGRRRFTVIRNSSNSSSDIAELQPASEGSPLLVPRQKYCESIHKTVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRLANLGMRAAELQQGVAPFEEKHRHYFDFQRRSGQLPIQKEGEEVDYRGVLHRDGSVLMSVSLDQLKAPELLYKSLAAKLVVGMPFKDLATVDSILLRELPSVDDHDARLALKRLVDISMGVITPLSEQLTKPLPHAMVLVNLQELSTGAYKLLPEGTRLVVSLRGDESYEELEILKDIDATMILHDLPFNEDKIGRVQAARRLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNVGALLVDGLGDGLLLEAPGQDFDFLRDTSFNLLQGVCLMSIMW

ccccccccccccccccccccccEEEEcEEEEEccccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccEEEEccEEccccccEEEEEccccccccHHHHHHHHHHHHHccccEEEEEcccHHHHHHHHHHHHHHHcccccccEEEcccccHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHcHHHHHHHHHHccccEEEEccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccEEEEEEcccHHHHHHHHHHHHHHHHHccccccccEEcccccccccccHHHHHHHHHHHHcccccEEEEEcccccccccHHHHHHHHcccccccccEEEccccccccccEEEEEcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccHHHccccccccHHHHHHHHHHHHccccccccccccccccccccccHHccHHHHHHHccccccccccEEEEEcccccHHHHHHHHccccEEEEEEcccccccccHHHHHHHHHHHHHHccccccEEEEEEccccccccHHHHHHHHHHcHHHHcccccEEEEEcccccHHHHHHHHHHHHHHHccccccc

cccccEcccccccccccccccccccccEEEEccHHHHHccccEEEEEEccccccccEEEEcccccccccccccccccccccccEEcccEEEEEccEEccccccEEEEEccccccccHHHHHHHHHHHHHccccEEEEEcccHHHHHHHHHHHHHHHHccccccEEEEEcccHHHHHHHHHHHcEEEEccccccccccccccEEccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEccccHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccEEEEEEcccHHHHHHHHHHHHHHHHHccccccEEccEEcccccccccEHHHHHHHHHHHcccccEEEEEcccccHHHcHHHHHHHHccccccccEEEEcccccccccEEcHHHHHHHHHHHHccccccccccEcccccEEEEEcHHHHccHHHHHHHHHHHHHccccccccccccEEEHHcccccccHHHHHHHHHHHHccccEEEEHHHHHccccccEEEEEcHHHHHHcHHHccccccEEEEEEcccccHHHHHHHcccccEEEEEEcccccccHHHHHHHHHHHHHHHHccccccEEEEEEccccccHcHEEEEcHHHHcHEEEcccccEEEEEcccccHHHHHHHHHHHHHHHHHEEEcc

matgtlpasfpglksrdsglgfaksvdfvrvcdfrkfksgrrRFTVirnssnsssdiaelqpasegspllvprqkYCESIHKTVRRKTRTVMVGnvaigsehpirvqtmttndtkdvAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVqknyniplvadihfaPSVALRVAECFDkirvnpgnfadRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRavrigtnhgslSDRImsyygdsprgmVESAFEFARICRKLDFHNFlfsmkasnPVVMVQAYRLLVAEMYVhgwdyplhlgvteagegedgrmkSAIGIGTLLqdglgdtirvslteppekeidpcRRLANLGMRAAELqqgvapfeekhrhyfdfqrrsgqlpiqkegeevdyrgvlhrdgsVLMSVSLDQLKAPELLYKSLAAKLVvgmpfkdlatVDSILlrelpsvddHDARLALKRLVDISmgvitplseqltkplphaMVLVNLQELstgaykllpegTRLVVslrgdesyeELEILKDIdatmilhdlpfnedkIGRVQAARRLFEYLSennlnfpvihhiqfpngihrddlvigagtNVGALLVDglgdgllleapgqdfdflRDTSFNLLQGVCLMSIMW

matgtlpasfpglksrdsglgfaksvdfvrvcdfrkfksgrrrftvirnssnsssdiaelqpasegspllvprqKYCESihktvrrktrtvmvgnvaigsehpirvqtmttnDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAvrigtnhgslsdrIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSlteppekeidpCRRLANLGMRAAELQQGVAPFEEKHRHYFDFqrrsgqlpiqkegEEVDYRGVLHRDGSVLMSVSLDQLKAPELLYKSLAAKLVVGMPFKDLATVDSILLrelpsvddhDARLALKRLVDISMGVITPLSEQLTKPLPHAMVLVNLQELSTGAYKLLPEGTRLVVSLRGDESYEELEILKDIDATMILHDLPFNEDKIGRVQAARRLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNVGALLVDGLGDGLLLEAPGQDFDFLRDTSFNLLQGvclmsimw

*******************LGFAKSVDFVRVCDFRKFKSGRRRFTVI***********************VPRQKYCESIHKTVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGE****RMKSAIGIGTLLQDGLGDTIRVSL**********CRRLANLGMRAAELQQGVAPFEEKHRHYFDFQ*************EVDYRGVLHRDGSVLMSVSLDQLKAPELLYKSLAAKLVVGMPFKDLATVDSILLRELPSVDDHDARLALKRLVDISMGVITPLSEQLTKPLPHAMVLVNLQELSTGAYKLLPEGTRLVVSLRGDESYEELEILKDIDATMILHDLPFNEDKIGRVQAARRLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNVGALLVDGLGDGLLLEAPGQDFDFLRDTSFNLLQGVCLMSIM*

***********GLKSRDSGLGFAKSVDFVRV*******************************************KYCESIHKTVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRLANLGMRAAELQQGVAPFEEKHRHYFDFQRRSGQLPIQKEGEEVDYRGVLHRDGSVLMSVSLDQLKAPELLYKSLAAKLVVGMPFKDLATVDSILLRELPSVDDHDARLALKRLVDISMGVITPLSEQLTKPLPHAMVLVNLQELSTGAYKLLPEGTRLVVSLRGDESYEELEILKDIDATMILHDLPFNEDKIGRVQAARRLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNVGALLVDGLGDGLLLEAPGQDFDFLRDTSFNLLQGVCLMSIMW

MATGTLPASFPGLKSRDSGLGFAKSVDFVRVCDFRKFKSGRRRFTVIRNS*************SEGSPLLVPRQKYCESIHKTVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRLANLGMRAAELQQGVAPFEEKHRHYFDFQRRSGQLPIQKEGEEVDYRGVLHRDGSVLMSVSLDQLKAPELLYKSLAAKLVVGMPFKDLATVDSILLRELPSVDDHDARLALKRLVDISMGVITPLSEQLTKPLPHAMVLVNLQELSTGAYKLLPEGTRLVVSLRGDESYEELEILKDIDATMILHDLPFNEDKIGRVQAARRLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNVGALLVDGLGDGLLLEAPGQDFDFLRDTSFNLLQGVCLMSIMW

*********************FAKSVDFVRVCDFRKFKSGRRRFTVIRNSSNSSSDIAELQPASEGSPLLVPRQKYCESIHKTVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRLANLGMRAAELQQGVAPFEEKHRHYFDFQRRSGQLPIQKEGEEVDYRGVLHRDGSVLMSVSLDQLKAPELLYKSLAAKLVVGMPFKDLATVDSILLRELPSVDDHDARLALKRLVDISMGVITPLSEQLTKPLPHAMVLVNLQELSTGAYKLLPEGTRLVVSLRGDESYEELEILKDIDATMILHDLPFNEDKIGRVQAARRLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNVGALLVDGLGDGLLLEAPGQDFDFLRDTSFNLLQGVCLMSIMW

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		640	2.2.26 [Sep-21-2011]
F4K0E8		741	4-hydroxy-3-methylbut-2-e	yes	no	0.990	0.855	0.855	0.0
Q6K8J4		744	4-hydroxy-3-methylbut-2-e	yes	no	0.990	0.852	0.815	0.0
Q6MD85		654	4-hydroxy-3-methylbut-2-e	yes	no	0.834	0.816	0.489	1e-147
Q9PKY3		601	4-hydroxy-3-methylbut-2-e	yes	no	0.489	0.520	0.517	4e-92
Q04YW2		663	4-hydroxy-3-methylbut-2-e	yes	no	0.806	0.778	0.387	4e-92
Q04UL2		663	4-hydroxy-3-methylbut-2-e	yes	no	0.806	0.778	0.387	6e-92
Q8F1H5		663	4-hydroxy-3-methylbut-2-e	yes	no	0.835	0.806	0.375	6e-91
Q72TR2		663	4-hydroxy-3-methylbut-2-e	yes	no	0.835	0.806	0.373	2e-90
O84060		602	4-hydroxy-3-methylbut-2-e	yes	no	0.435	0.463	0.544	5e-89
Q3KMW4		602	4-hydroxy-3-methylbut-2-e	yes	no	0.435	0.463	0.544	5e-89

>sp\|F4K0E8\|ISPG_ARATH 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, chloroplastic OS=Arabidopsis thaliana GN=ISPG PE=1 SV=1	Back alignment and function desciption

 Score = 1141 bits (2951), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 544/636 (85%), Positives = 593/636 (93%), Gaps = 2/636 (0%)

Query: 1   MATGTLPASFPGLKSRDSGLGFAKSVDFVRVCDFRKFKSGRRRFTVIRNSSNSSSDIAEL 60
           MATG LPA   G+K  DS +GF KS++ VR+CD R  +S RRR +VIRNS N  SD+AEL
Sbjct: 1   MATGVLPAPVSGIKIPDSKVGFGKSMNLVRICDVRSLRSARRRVSVIRNS-NQGSDLAEL 59

Query: 61  QPASEGSPLLVPRQKYCESIHKTVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGT 120
           QPASEGSPLLVPRQKYCES+HKTVRRKTRTVMVGNVA+GSEHPIR+QTMTT+DTKD+ GT
Sbjct: 60  QPASEGSPLLVPRQKYCESLHKTVRRKTRTVMVGNVALGSEHPIRIQTMTTSDTKDITGT 119

Query: 121 VEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAE 180
           V+EVMRIAD+GAD+VRITVQGK+EADACFEIK+ LVQ NYNIPLVADIHFAP+VALRVAE
Sbjct: 120 VDEVMRIADKGADIVRITVQGKKEADACFEIKDKLVQLNYNIPLVADIHFAPTVALRVAE 179

Query: 181 CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNH 240
           CFDKIRVNPGNFADRRAQFE ++YT+DEYQKELQHIE+VF+PLVEKCKKYGRA+RIGTNH
Sbjct: 180 CFDKIRVNPGNFADRRAQFETIDYTEDEYQKELQHIEQVFTPLVEKCKKYGRAMRIGTNH 239

Query: 241 GSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEM 300
           GSLSDRIMSYYGDSPRGMVESAFEFARICRKLD+HNF+FSMKASNPV+MVQAYRLLVAEM
Sbjct: 240 GSLSDRIMSYYGDSPRGMVESAFEFARICRKLDYHNFVFSMKASNPVIMVQAYRLLVAEM 299

Query: 301 YVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRL 360
           YVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPE+EIDPCRRL
Sbjct: 300 YVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEEEIDPCRRL 359

Query: 361 ANLGMRAAELQQGVAPFEEKHRHYFDFQRRSGQLPIQKEGEEVDYRGVLHRDGSVLMSVS 420
           ANLG +AA+LQQGVAPFEEKHRHYFDFQRR+G LP+QKEGEEVDYR VLHRDGSVLMS+S
Sbjct: 360 ANLGTKAAKLQQGVAPFEEKHRHYFDFQRRTGDLPVQKEGEEVDYRNVLHRDGSVLMSIS 419

Query: 421 LDQLKAPELLYKSLAAKLVVGMPFKDLATVDSILLRELPSVDDHDARLALKRLVDISMGV 480
           LDQLKAPELLY+SLA KLVVGMPFKDLATVDSILLRELP VDD  ARLALKRL+D+SMGV
Sbjct: 420 LDQLKAPELLYRSLATKLVVGMPFKDLATVDSILLRELPPVDDQVARLALKRLIDVSMGV 479

Query: 481 ITPLSEQLTKPLPHAMVLVNLQELSTGAYKLLPEGTRLVVSLRGDESYEELEILKDIDAT 540
           I PLSEQLTKPLP+AMVLVNL+ELS GAYKLLPEGTRLVVSLRGDE YEELEILK+IDAT
Sbjct: 480 IAPLSEQLTKPLPNAMVLVNLKELSGGAYKLLPEGTRLVVSLRGDEPYEELEILKNIDAT 539

Query: 541 MILHDLPFNEDKIGRVQAARRLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNVGA 600
           MILHD+PF EDK+ RV AARRLFE+LSEN++NFPVIHHI FP GIHRD+LVI AGT  G 
Sbjct: 540 MILHDVPFTEDKVSRVHAARRLFEFLSENSVNFPVIHHINFPTGIHRDELVIHAGTYAGG 599

Query: 601 LLVDGLGDGLLLEAPGQDFDFLRDTSFNLLQGVCLM 636
           LLVDGLGDG++LEAP QDFDFLR+TSFNLLQG C M
Sbjct: 600 LLVDGLGDGVMLEAPDQDFDFLRNTSFNLLQG-CRM 634

Enzyme of the plastid non-mevalonate pathway for isoprenoid biosynthesis that converts 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Is essential for chloroplast development and required for the salicylic acid (SA)-mediated disease resistance to biotrophic pathogens.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 7EC: .EC: 7EC: .EC: 1

>sp\|Q6K8J4\|ISPG_ORYSJ 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, chloroplastic OS=Oryza sativa subsp. japonica GN=ISPG PE=2 SV=1	Back alignment and function description

>sp\|Q6MD85\|ISPG_PARUW 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Protochlamydia amoebophila (strain UWE25) GN=ispG PE=3 SV=1	Back alignment and function description

>sp\|Q9PKY3\|ISPG_CHLMU 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlamydia muridarum (strain MoPn / Nigg) GN=ispG PE=3 SV=1	Back alignment and function description

>sp\|Q04YW2\|ISPG_LEPBL 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=ispG PE=3 SV=1	Back alignment and function description

>sp\|Q04UL2\|ISPG_LEPBJ 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=ispG PE=3 SV=1	Back alignment and function description

>sp\|Q8F1H5\|ISPG_LEPIN 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar Lai (strain 56601) GN=ispG PE=3 SV=1	Back alignment and function description

>sp\|Q72TR2\|ISPG_LEPIC 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni (strain Fiocruz L1-130) GN=ispG PE=3 SV=1	Back alignment and function description

>sp\|O84060\|ISPG_CHLTR 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlamydia trachomatis (strain D/UW-3/Cx) GN=ispG PE=3 SV=1	Back alignment and function description

>sp\|Q3KMW4\|ISPG_CHLTA 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlamydia trachomatis serovar A (strain HAR-13 / ATCC VR-571B) GN=ispG PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		640
164605000		740	4-hydroxy-3-methylbut-2-en-1-yl diphosph	0.990	0.856	0.899	0.0
255578864		716	4-hydroxy-3-methylbut-2-en-1-yl diphosph	0.992	0.886	0.879	0.0
225435309		740	PREDICTED: 4-hydroxy-3-methylbut-2-en-1-	0.990	0.856	0.871	0.0
224106738		741	predicted protein [Populus trichocarpa]	0.990	0.855	0.871	0.0
402770461		741	hydroxymethylbutenyl diphosphate synthas	0.990	0.855	0.874	0.0
147798613		740	hypothetical protein VITISV_005654 [Viti	0.990	0.856	0.867	0.0
356543460		741	PREDICTED: 4-hydroxy-3-methylbut-2-en-1-	0.990	0.855	0.861	0.0
297793619		741	hypothetical protein ARALYDRAFT_919295 [	0.990	0.855	0.858	0.0
312282499		742	unnamed protein product [Thellungiella h	0.992	0.855	0.853	0.0
356550161		742	PREDICTED: 4-hydroxy-3-methylbut-2-en-1-	0.990	0.854	0.857	0.0

>gi\|164605000\|dbj\|BAF98296.1\| 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase [Hevea brasiliensis]	Back alignment and taxonomy information

 Score = 1189 bits (3077), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 572/636 (89%), Positives = 609/636 (95%), Gaps = 2/636 (0%)

Query: 1   MATGTLPASFPGLKSRDSGLGFAKSVDFVRVCDFRKFKSGRRRFTVIRNSSNSSSDIAEL 60
           MATG +PASF GLK+RDS LGF KS+DFVRVCD ++ KSGR++ ++IRNS N   ++ EL
Sbjct: 1   MATGAVPASFTGLKTRDSSLGFGKSMDFVRVCDLKRIKSGRKKISMIRNS-NPGPEMVEL 59

Query: 61  QPASEGSPLLVPRQKYCESIHKTVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGT 120
           QPASEGSPLLVPRQKYCES+HKTVRRKTRTVMVGNVA+GSEHPIRVQTMTT+DTKDVAGT
Sbjct: 60  QPASEGSPLLVPRQKYCESVHKTVRRKTRTVMVGNVALGSEHPIRVQTMTTSDTKDVAGT 119

Query: 121 VEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAE 180
           VE+VMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAE
Sbjct: 120 VEQVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAE 179

Query: 181 CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNH 240
           CFDKIRVNPGNFADRRAQFE+LEYT+D+YQKEL+HIE+VF+PLVEKCKKYGRA+RIGTNH
Sbjct: 180 CFDKIRVNPGNFADRRAQFEKLEYTEDDYQKELEHIEQVFTPLVEKCKKYGRAMRIGTNH 239

Query: 241 GSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEM 300
           GSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNF+FSMKASNPV+MVQAYRLLVAEM
Sbjct: 240 GSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFVFSMKASNPVIMVQAYRLLVAEM 299

Query: 301 YVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRL 360
           YV GWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRL
Sbjct: 300 YVQGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRL 359

Query: 361 ANLGMRAAELQQGVAPFEEKHRHYFDFQRRSGQLPIQKEGEEVDYRGVLHRDGSVLMSVS 420
           ANLGMRA+ +QQGVAPFEEKHRHYFDFQRRSGQLP+QKEGEEVDYRGVLHRDGSVLMSV 
Sbjct: 360 ANLGMRASTVQQGVAPFEEKHRHYFDFQRRSGQLPVQKEGEEVDYRGVLHRDGSVLMSVC 419

Query: 421 LDQLKAPELLYKSLAAKLVVGMPFKDLATVDSILLRELPSVDDHDARLALKRLVDISMGV 480
           LDQLKAPELLYKSLAAKLVVGMPFKDLATVDSILLRELP V+D+DARLALKRL+DISMGV
Sbjct: 420 LDQLKAPELLYKSLAAKLVVGMPFKDLATVDSILLRELPPVEDNDARLALKRLIDISMGV 479

Query: 481 ITPLSEQLTKPLPHAMVLVNLQELSTGAYKLLPEGTRLVVSLRGDESYEELEILKDIDAT 540
           I PLSEQLTKPLP+AMVLVNL+ELSTGA+KLLPEGTRLVVS RGDE YEELEILKDIDAT
Sbjct: 480 IVPLSEQLTKPLPNAMVLVNLKELSTGAHKLLPEGTRLVVSARGDEPYEELEILKDIDAT 539

Query: 541 MILHDLPFNEDKIGRVQAARRLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNVGA 600
           MILHDLPF EDKIGRV AARRLFE+LS+N LNFPVIHHIQFPN IHRDDLVIGAGTN GA
Sbjct: 540 MILHDLPFTEDKIGRVHAARRLFEFLSDNALNFPVIHHIQFPNAIHRDDLVIGAGTNAGA 599

Query: 601 LLVDGLGDGLLLEAPGQDFDFLRDTSFNLLQGVCLM 636
           LLVDGLGDG+LLEAP QDFDFLR+TSFNLLQG C M
Sbjct: 600 LLVDGLGDGILLEAPDQDFDFLRNTSFNLLQG-CRM 634

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255578864\|ref\|XP_002530286.1\| 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, putative [Ricinus communis] gi\|223530184\|gb\|EEF32093.1\| 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|225435309\|ref\|XP_002285130.1\| PREDICTED: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase [Vitis vinifera] gi\|297746253\|emb\|CBI16309.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224106738\|ref\|XP_002314268.1\| predicted protein [Populus trichocarpa] gi\|222850676\|gb\|EEE88223.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|402770461\|gb\|AFQ98370.1\| hydroxymethylbutenyl diphosphate synthase [Camellia sinensis]	Back alignment and taxonomy information

>gi\|147798613\|emb\|CAN72185.1\| hypothetical protein VITISV_005654 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356543460\|ref\|XP_003540178.1\| PREDICTED: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase-like [Glycine max]	Back alignment and taxonomy information

>gi\|297793619\|ref\|XP_002864694.1\| hypothetical protein ARALYDRAFT_919295 [Arabidopsis lyrata subsp. lyrata] gi\|297310529\|gb\|EFH40953.1\| hypothetical protein ARALYDRAFT_919295 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|312282499\|dbj\|BAJ34115.1\| unnamed protein product [Thellungiella halophila]	Back alignment and taxonomy information

>gi\|356550161\|ref\|XP_003543457.1\| PREDICTED: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase-like [Glycine max]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		640
TAIR\|locus:2175851		741	HDS "4-hydroxy-3-methylbut-2-e	0.990	0.855	0.838	5e-289
GENEDB_PFALCIPARUM\|PF10_0221		824	PF10_0221 "GcpE protein" [Plas	0.681	0.529	0.409	1.1e-85
UNIPROTKB\|Q8IJH7		824	PF10_0221 "GcpE protein" [Plas	0.681	0.529	0.409	1.1e-85
UNIPROTKB\|P73672		403	ispG "4-hydroxy-3-methylbut-2-	0.475	0.754	0.480	1.3e-68
UNIPROTKB\|Q8DK70		402	ispG "4-hydroxy-3-methylbut-2-	0.457	0.728	0.474	5.1e-67
UNIPROTKB\|Q81LV7		367	ispG "4-hydroxy-3-methylbut-2-	0.207	0.362	0.424	3.1e-45
TIGR_CMR\|BA_4502		367	BA_4502 "gcpE protein" [Bacill	0.207	0.362	0.424	3.1e-45
UNIPROTKB\|O33350		387	ispG "4-hydroxy-3-methylbut-2-	0.237	0.392	0.438	2.4e-42
TIGR_CMR\|CHY_1776		355	CHY_1776 "1-hydroxy-2-methyl-2	0.217	0.391	0.431	2.7e-40
TIGR_CMR\|SPO_2594		375	SPO_2594 "1-hydroxy-2-methyl-2	0.217	0.370	0.424	2.7e-39

TAIR\|locus:2175851 HDS "4-hydroxy-3-methylbut-2-enyl diphosphate synthase" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2776 (982.3 bits), Expect = 5.0e-289, P = 5.0e-289
 Identities = 533/636 (83%), Positives = 580/636 (91%)

Query:     1 MATGTLPASFPGLKSRDSGLGFAKSVDFVRVCDFRKFKSGRRRFTVIRNSSNSSSDIAEL 60
             MATG LPA   G+K  DS +GF KS++ VR+CD R  +S RRR +VIRNS N  SD+AEL
Sbjct:     1 MATGVLPAPVSGIKIPDSKVGFGKSMNLVRICDVRSLRSARRRVSVIRNS-NQGSDLAEL 59

Query:    61 QPASEGSPLLVPRQKYCESIHKTVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGT 120
             QPASEGSPLLVPRQKYCES+HKTVRRKTRTVMVGNVA+GSEHPIR+QTMTT+DTKD+ GT
Sbjct:    60 QPASEGSPLLVPRQKYCESLHKTVRRKTRTVMVGNVALGSEHPIRIQTMTTSDTKDITGT 119

Query:   121 VEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAE 180
             V+EVMRIAD+GAD+VRITVQGK+EADACFEIK+ LVQ NYNIPLVADIHFAP+VALRVAE
Sbjct:   120 VDEVMRIADKGADIVRITVQGKKEADACFEIKDKLVQLNYNIPLVADIHFAPTVALRVAE 179

Query:   181 CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNH 240
             CFDKIRVNPGNFADRRAQFE ++YT+DEYQKELQHIE+VF+PLVEKCKKYGRA+RIGTNH
Sbjct:   180 CFDKIRVNPGNFADRRAQFETIDYTEDEYQKELQHIEQVFTPLVEKCKKYGRAMRIGTNH 239

Query:   241 GSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEM 300
             GSLSDRIMSYYGDSPRGMVESAFEFARICRKLD+HNF+FSMKASNPV+MVQAYRLLVAEM
Sbjct:   240 GSLSDRIMSYYGDSPRGMVESAFEFARICRKLDYHNFVFSMKASNPVIMVQAYRLLVAEM 299

Query:   301 YVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRL 360
             YVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPE+EIDPCRRL
Sbjct:   300 YVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEEEIDPCRRL 359

Query:   361 ANLGMRAAELQQGVAPFEEKHRHYFDFQRRSGQLPIQKEGEEVDYRGVLHRDGSVLMSVS 420
             ANLG +AA+LQQGVAPFEEKHRHYFDFQRR+G LP+QKEGEEVDYR VLHRDGSVLMS+S
Sbjct:   360 ANLGTKAAKLQQGVAPFEEKHRHYFDFQRRTGDLPVQKEGEEVDYRNVLHRDGSVLMSIS 419

Query:   421 LDQLKAPELLYKSLAAKLVVGMPFKDLATVDSILLRELPSVDDHDARLALKRLVDISMGV 480
             LDQLKAPELLY+SLA KLVVGMPFKDLATVDSILLRELP VDD  ARLALKRL+D+SMGV
Sbjct:   420 LDQLKAPELLYRSLATKLVVGMPFKDLATVDSILLRELPPVDDQVARLALKRLIDVSMGV 479

Query:   481 ITPLSEQLTKPLPHAMVLVNLQELSTGAYKLLPEGTRLVVSLRGDESYEELEILKDIDAT 540
             I PLSEQLTKPLP+AMVLVNL+ELS GAYKLLPEGTRLVVSLRGDE YEELEILK+IDAT
Sbjct:   480 IAPLSEQLTKPLPNAMVLVNLKELSGGAYKLLPEGTRLVVSLRGDEPYEELEILKNIDAT 539

Query:   541 MILHDLPFNEDKIGRVQAARRLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNXXX 600
             MILHD+PF EDK+ RV AARRLFE+LSEN++NFPVIHHI FP GIHRD+LVI AGT    
Sbjct:   540 MILHDVPFTEDKVSRVHAARRLFEFLSENSVNFPVIHHINFPTGIHRDELVIHAGTYAGG 599

Query:   601 XXXXXXXXXXXXEAPGQDFDFLRDTSFNLLQGVCLM 636
                         EAP QDFDFLR+TSFNLLQG C M
Sbjct:   600 LLVDGLGDGVMLEAPDQDFDFLRNTSFNLLQG-CRM 634

GO:0005506 "iron ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008299 "isoprenoid biosynthetic process" evidence=IEA;ISS

GO:0016114 "terpenoid biosynthetic process" evidence=IEA

GO:0044237 "cellular metabolic process" evidence=IEA

GO:0046429 "4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity" evidence=IEA;IGI;ISS;IDA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA;TAS

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IDA

GO:0009617 "response to bacterium" evidence=IMP

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA;IMP

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006417 "regulation of translation" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA

GO:0006655 "phosphatidylglycerol biosynthetic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009416 "response to light stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009637 "response to blue light" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010114 "response to red light" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

GO:0010304 "PSII associated light-harvesting complex II catabolic process" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015994 "chlorophyll metabolic process" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

GO:0019216 "regulation of lipid metabolic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0019760 "glucosinolate metabolic process" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0031408 "oxylipin biosynthetic process" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GENEDB_PFALCIPARUM\|PF10_0221 PF10_0221 "GcpE protein" [Plasmodium falciparum (taxid:5833)]	Back alignment and assigned GO terms

UNIPROTKB\|Q8IJH7 PF10_0221 "GcpE protein" [Plasmodium falciparum 3D7 (taxid:36329)]	Back alignment and assigned GO terms

UNIPROTKB\|P73672 ispG "4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)]	Back alignment and assigned GO terms

UNIPROTKB\|Q8DK70 ispG "4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase" [Thermosynechococcus elongatus BP-1 (taxid:197221)]	Back alignment and assigned GO terms

UNIPROTKB\|Q81LV7 ispG "4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase" [Bacillus anthracis (taxid:1392)]	Back alignment and assigned GO terms

TIGR_CMR\|BA_4502 BA_4502 "gcpE protein" [Bacillus anthracis str. Ames (taxid:198094)]	Back alignment and assigned GO terms

UNIPROTKB\|O33350 ispG "4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase" [Mycobacterium tuberculosis (taxid:1773)]	Back alignment and assigned GO terms

TIGR_CMR\|CHY_1776 CHY_1776 "1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]	Back alignment and assigned GO terms

TIGR_CMR\|SPO_2594 SPO_2594 "1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6K8J4	ISPG_ORYSJ	1, ., 1, 7, ., 7, ., 1	0.8156	0.9906	0.8521	yes	no
F4K0E8	ISPG_ARATH	1, ., 1, 7, ., 7, ., 1	0.8553	0.9906	0.8556	yes	no
Q6MD85	ISPG_PARUW	1, ., 1, 7, ., 7, ., 1	0.4895	0.8343	0.8165	yes	no
Q72TR2	ISPG_LEPIC	1, ., 1, 7, ., 7, ., 1	0.3734	0.8359	0.8069	yes	no
Q8F1H5	ISPG_LEPIN	1, ., 1, 7, ., 7, ., 1	0.3752	0.8359	0.8069	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.17.7	0.691
4th Layer	1.17.7.1	0.824

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00024531001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (740 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00002540001	RecName- Full=2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; EC=4.6.1.12; (183 aa)		•		•	•	0.995
	GSVIVG00036436001	SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (465 aa)		•	•	•	•	0.990
	GSVIVG00016085001	SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (471 aa)	•	•	•		•	0.971
	GSVIVG00035363001	SubName- Full=Chromosome undetermined scaffold_77, whole genome shotgun sequence; (238 aa)		•		•	•	0.917
	GSVIVG00017298001	SubName- Full=Chromosome chr6 scaffold_15, whole genome shotgun sequence; (339 aa)		•			•	0.869
	GSVIVG00017986001	SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (411 aa)			•		•	0.611
	GSVIVG00038863001	SubName- Full=Chromosome chr8 scaffold_99, whole genome shotgun sequence; (370 aa)			•		•	0.599
	GSVIVG00018944001	RecName- Full=Citrate synthase; (466 aa)					•	0.557
	GSVIVG00007436001	SubName- Full=Chromosome chr14 scaffold_190, whole genome shotgun sequence; (123 aa)	•					0.548
	GSVIVG00015405001	RecName- Full=Delta-aminolevulinic acid dehydratase; EC=4.2.1.24; (430 aa)			•		•	0.544

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		640
PLN02925		733	PLN02925, PLN02925, 4-hydroxy-3-methylbut-2-en-1-y	0.0
pfam04551		345	pfam04551, GcpE, GcpE protein	1e-129
PRK00694		606	PRK00694, PRK00694, 4-hydroxy-3-methylbut-2-en-1-y	1e-123
PRK02048		611	PRK02048, PRK02048, 4-hydroxy-3-methylbut-2-en-1-y	1e-120
COG0821		361	COG0821, gcpE, 1-hydroxy-2-methyl-2-(e)-butenyl 4-	1e-109
PRK00366		360	PRK00366, ispG, 4-hydroxy-3-methylbut-2-en-1-yl di	1e-108
TIGR00612		346	TIGR00612, ispG_gcpE, 1-hydroxy-2-methyl-2-(E)-but	1e-103

>gnl\|CDD\|178513 PLN02925, PLN02925, 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase	Back alignment and domain information

 Score = 1269 bits (3285), Expect = 0.0
 Identities = 546/636 (85%), Positives = 589/636 (92%), Gaps = 9/636 (1%)

Query: 1   MATGTLPASFPGLKSRDSGLGFAKSVDFVRVCDFRKFKSGRRRFTVIRNSSNSSSDIAEL 60
           MATG LPA   GLK+ DS LGF KS+DFVR+CD R         +VIRNS N+  D+ EL
Sbjct: 1   MATGVLPAPLSGLKTSDSKLGFGKSMDFVRICDVR-------SVSVIRNS-NTGPDLVEL 52

Query: 61  QPASEGSPLLVPRQKYCESIHKTVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGT 120
           QPASEGSPLLVPRQKYCESIHKTVRRKTRTVMVGNVA+GSEHPIR+QTMTT DTKDV  T
Sbjct: 53  QPASEGSPLLVPRQKYCESIHKTVRRKTRTVMVGNVALGSEHPIRIQTMTTTDTKDVEAT 112

Query: 121 VEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAE 180
           V++VMRIAD+GAD+VRITVQGK+EADACFEIKN+LVQK YNIPLVADIHFAPSVALRVAE
Sbjct: 113 VDQVMRIADKGADIVRITVQGKKEADACFEIKNTLVQKGYNIPLVADIHFAPSVALRVAE 172

Query: 181 CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNH 240
           CFDKIRVNPGNFADRRAQFE+LEYT+D+YQKEL+HIEEVF+PLVEKCKKYGRA+RIGTNH
Sbjct: 173 CFDKIRVNPGNFADRRAQFEKLEYTEDDYQKELEHIEEVFTPLVEKCKKYGRAMRIGTNH 232

Query: 241 GSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEM 300
           GSLSDRIMSYYGDSPRGMVESAFEFARICRKLD+HNF+FSMKASNPVVMVQAYRLLVAEM
Sbjct: 233 GSLSDRIMSYYGDSPRGMVESAFEFARICRKLDYHNFVFSMKASNPVVMVQAYRLLVAEM 292

Query: 301 YVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRL 360
           YV GWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPE+EIDPCRRL
Sbjct: 293 YVLGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEEEIDPCRRL 352

Query: 361 ANLGMRAAELQQGVAPFEEKHRHYFDFQRRSGQLPIQKEGEEVDYRGVLHRDGSVLMSVS 420
           ANLGM+AA LQQGVAPFEEKHR YFDFQRR+GQLP+QKEGEEVDYR VLHRDGSVLMSVS
Sbjct: 353 ANLGMKAAALQQGVAPFEEKHRDYFDFQRRTGQLPVQKEGEEVDYRNVLHRDGSVLMSVS 412

Query: 421 LDQLKAPELLYKSLAAKLVVGMPFKDLATVDSILLRELPSVDDHDARLALKRLVDISMGV 480
           LDQLKAPELLY+SLAAKLVVGMPFKDLATVDSILLRELP VDD +ARLALKRL+D+SMGV
Sbjct: 413 LDQLKAPELLYRSLAAKLVVGMPFKDLATVDSILLRELPPVDDEEARLALKRLIDVSMGV 472

Query: 481 ITPLSEQLTKPLPHAMVLVNLQELSTGAYKLLPEGTRLVVSLRGDESYEELEILKDIDAT 540
           I PLSEQLTKPLP+AM LVNL+ELS+GA+KLLPEGTRL V+LRGDE YEELEILKD+DAT
Sbjct: 473 IAPLSEQLTKPLPNAMALVNLKELSSGAHKLLPEGTRLAVTLRGDEPYEELEILKDVDAT 532

Query: 541 MILHDLPFNEDKIGRVQAARRLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNVGA 600
           M+LHD+PF EDK+ RV AARRLFEYLS N+LNFPVIHHIQFP GIHRDDLVI AG+  GA
Sbjct: 533 MLLHDVPFTEDKVSRVHAARRLFEYLSSNSLNFPVIHHIQFPAGIHRDDLVIQAGSQAGA 592

Query: 601 LLVDGLGDGLLLEAPGQDFDFLRDTSFNLLQGVCLM 636
           LLVDGLGDG+LLEAP QDFDFLR+TSF LLQG C M
Sbjct: 593 LLVDGLGDGVLLEAPDQDFDFLRNTSFGLLQG-CRM 627

Length = 733

>gnl\|CDD\|218143 pfam04551, GcpE, GcpE protein	Back alignment and domain information

>gnl\|CDD\|234812 PRK00694, PRK00694, 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated	Back alignment and domain information

>gnl\|CDD\|179361 PRK02048, PRK02048, 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional	Back alignment and domain information

>gnl\|CDD\|223891 COG0821, gcpE, 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]	Back alignment and domain information

>gnl\|CDD\|234737 PRK00366, ispG, 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed	Back alignment and domain information

>gnl\|CDD\|233052 TIGR00612, ispG_gcpE, 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		640
PLN02925		733	4-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha	100.0
PRK02048		611	4-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha	100.0
PRK00694		606	4-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha	100.0
TIGR00612		346	ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-dipho	100.0
PF04551		359	GcpE: GcpE protein; InterPro: IPR004588 This prote	100.0
PRK00366		360	ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate s	100.0
COG0821		361	gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphat	100.0
PLN02925		733	4-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha	99.93
PRK02048		611	4-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha	99.93
PRK00694		606	4-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha	99.9
PRK04165		450	acetyl-CoA decarbonylase/synthase complex subunit	98.61
PF04551		359	GcpE: GcpE protein; InterPro: IPR004588 This prote	98.42
cd00423		258	Pterin_binding Pterin binding enzymes. This family	97.68
cd00739		257	DHPS DHPS subgroup of Pterin binding enzymes. DHPS	97.58
TIGR00284		499	dihydropteroate synthase-related protein. This pro	97.54
TIGR01496		257	DHPS dihydropteroate synthase. This model represen	97.49
PRK07535		261	methyltetrahydrofolate:corrinoid/iron-sulfur prote	97.37
PRK04452		319	acetyl-CoA decarbonylase/synthase complex subunit	97.34
TIGR00381		389	cdhD CO dehydrogenase/acetyl-CoA synthase, delta s	97.2
PRK13398		266	3-deoxy-7-phosphoheptulonate synthase; Provisional	97.18
PRK12595		360	bifunctional 3-deoxy-7-phosphoheptulonate synthase	96.98
PRK11613		282	folP dihydropteroate synthase; Provisional	96.85
TIGR02082		1178	metH 5-methyltetrahydrofolate--homocysteine methyl	96.45
PRK09490		1229	metH B12-dependent methionine synthase; Provisiona	96.33
cd07939		259	DRE_TIM_NifV Streptomyces rubellomurinus FrbC and	96.08
TIGR00542		279	hxl6Piso_put hexulose-6-phosphate isomerase, putat	96.07
PF00809		210	Pterin_bind: Pterin binding enzyme This Prosite en	95.98
PRK13753		279	dihydropteroate synthase; Provisional	95.88
PF00682		237	HMGL-like: HMGL-like of this family is not conserv	95.63
PRK08673		335	3-deoxy-7-phosphoheptulonate synthase; Reviewed	95.59
cd07948		262	DRE_TIM_HCS Saccharomyces cerevisiae homocitrate s	95.48
PRK00366		360	ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate s	95.41
TIGR01361		260	DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate	95.39
PRK02412		253	aroD 3-dehydroquinate dehydratase; Provisional	95.35
cd00740		252	MeTr MeTr subgroup of pterin binding enzymes. This	95.25
PRK13397		250	3-deoxy-7-phosphoheptulonate synthase; Provisional	95.08
TIGR00612		346	ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-dipho	95.08
PRK00979		308	tetrahydromethanopterin S-methyltransferase subuni	94.95
PRK13396		352	3-deoxy-7-phosphoheptulonate synthase; Provisional	94.91
cd07940		268	DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-	94.88
cd00958		235	DhnA Class I fructose-1,6-bisphosphate (FBP) aldol	94.72
PRK04180		293	pyridoxal biosynthesis lyase PdxS; Provisional	94.24
PF01261		213	AP_endonuc_2: Xylose isomerase-like TIM barrel; In	94.1
PRK12457		281	2-dehydro-3-deoxyphosphooctonate aldolase; Provisi	93.79
TIGR03234		254	OH-pyruv-isom hydroxypyruvate isomerase. This enzy	93.78
cd03174		265	DRE_TIM_metallolyase DRE-TIM metallolyase superfam	93.75
cd07943		263	DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-te	93.69
PRK07028		430	bifunctional hexulose-6-phosphate synthase/ribonuc	93.58
PRK13210		284	putative L-xylulose 5-phosphate 3-epimerase; Revie	93.47
cd04727		283	pdxS PdxS is a subunit of the pyridoxal 5'-phospha	93.19
PRK11858		378	aksA trans-homoaconitate synthase; Reviewed	93.16
TIGR01302		450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	93.13
TIGR02660		365	nifV_homocitr homocitrate synthase NifV. This fami	93.12
TIGR02631		382	xylA_Arthro xylose isomerase, Arthrobacter type. T	92.92
PRK15129		321	L-Ala-D/L-Glu epimerase; Provisional	92.82
PLN02746		347	hydroxymethylglutaryl-CoA lyase	92.8
PF05853		272	DUF849: Prokaryotic protein of unknown function (D	92.73
PRK09997		258	hydroxypyruvate isomerase; Provisional	92.66
cd00019		279	AP2Ec AP endonuclease family 2; These endonuclease	92.58
TIGR02090		363	LEU1_arch isopropylmalate/citramalate/homocitrate	92.5
cd07941		273	DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3	92.46
TIGR01502		408	B_methylAsp_ase methylaspartate ammonia-lyase. Thi	92.32
PTZ00314		495	inosine-5'-monophosphate dehydrogenase; Provisiona	91.85
PRK09389		488	(R)-citramalate synthase; Provisional	91.7
cd00502		225	DHQase_I Type I 3-dehydroquinase, (3-dehydroquinat	91.37
cd07944		266	DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-	90.69
cd07938		274	DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase,	90.6
PRK05198		264	2-dehydro-3-deoxyphosphooctonate aldolase; Provisi	90.41
cd00452		190	KDPG_aldolase KDPG and KHG aldolase. This family b	90.38
cd04733		338	OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN	90.34
cd03316		357	MR_like Mandelate racemase (MR)-like subfamily of	90.29
cd03315		265	MLE_like Muconate lactonizing enzyme (MLE) like su	90.1
cd04729		219	NanE N-acetylmannosamine-6-phosphate epimerase (Na	90.04
PRK02412		253	aroD 3-dehydroquinate dehydratase; Provisional	90.01
PRK07379		400	coproporphyrinogen III oxidase; Provisional	89.76
PRK13523		337	NADPH dehydrogenase NamA; Provisional	89.75
PRK09989		258	hypothetical protein; Provisional	89.64
TIGR01093		228	aroD 3-dehydroquinate dehydratase, type I. Type II	89.44
cd07947		279	DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synt	89.28
TIGR00343		287	pyridoxal 5'-phosphate synthase, synthase subunit	88.71
COG1410		842	MetH Methionine synthase I, cobalamin-binding doma	88.71
PRK13111		258	trpA tryptophan synthase subunit alpha; Provisiona	88.23
PLN02424		332	ketopantoate hydroxymethyltransferase	88.22
PRK09249		453	coproporphyrinogen III oxidase; Provisional	88.06
PRK05799		374	coproporphyrinogen III oxidase; Provisional	87.9
PF04131		192	NanE: Putative N-acetylmannosamine-6-phosphate epi	87.84
cd02931		382	ER_like_FMN Enoate reductase (ER)-like FMN-binding	87.64
PRK13209		283	L-xylulose 5-phosphate 3-epimerase; Reviewed	87.61
PLN02274		505	inosine-5'-monophosphate dehydrogenase	87.48
cd04734		343	OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN	87.42
COG0821		361	gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphat	87.35
PRK08446		350	coproporphyrinogen III oxidase; Provisional	87.32
cd07945		280	DRE_TIM_CMS Leptospira interrogans citramalate syn	87.22
TIGR00492		367	alr alanine racemase. This enzyme interconverts L-	87.09
PRK01130		221	N-acetylmannosamine-6-phosphate 2-epimerase; Provi	86.46
cd04747		361	OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN	86.43
PRK08599		377	coproporphyrinogen III oxidase; Provisional	86.29
PF01487		224	DHquinase_I: Type I 3-dehydroquinase; InterPro: IP	86.15
PRK14017		382	galactonate dehydratase; Provisional	86.01
PRK06843		404	inosine 5-monophosphate dehydrogenase; Validated	85.74
cd06815		353	PLPDE_III_AR_like_1 Type III Pyridoxal 5-phosphate	85.6
PRK12344		524	putative alpha-isopropylmalate/homocitrate synthas	85.27
cd04729		219	NanE N-acetylmannosamine-6-phosphate epimerase (Na	85.13
TIGR00262		256	trpA tryptophan synthase, alpha subunit. Tryptopha	84.91
PRK05628		375	coproporphyrinogen III oxidase; Validated	84.89
cd04727		283	pdxS PdxS is a subunit of the pyridoxal 5'-phospha	84.56
cd00381		325	IMPDH IMPDH: The catalytic domain of the inosine m	84.55
cd00945		201	Aldolase_Class_I Class I aldolases. The class I al	84.25
cd02930		353	DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-bindin	84.11
cd00945		201	Aldolase_Class_I Class I aldolases. The class I al	84.1
PRK06245		336	cofG FO synthase subunit 1; Reviewed	84.02
TIGR00035		229	asp_race aspartate racemase.	83.95
PRK01261		229	aroD 3-dehydroquinate dehydratase; Provisional	83.89
cd04722		200	TIM_phosphate_binding TIM barrel proteins share a	83.58
PRK05660		378	HemN family oxidoreductase; Provisional	83.48
TIGR01182		204	eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho	83.43
PRK00915		513	2-isopropylmalate synthase; Validated	83.39
cd03317		354	NAAAR N-acylamino acid racemase (NAAAR), an octame	83.31
cd03319		316	L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase cat	83.08
PRK08255		765	salicylyl-CoA 5-hydroxylase; Reviewed	83.02
cd04728		248	ThiG Thiazole synthase (ThiG) is the tetrameric en	82.93
cd02932		336	OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN	82.78
TIGR00538		455	hemN oxygen-independent coproporphyrinogen III oxi	82.6
PRK00208		250	thiG thiazole synthase; Reviewed	82.55
TIGR03586		327	PseI pseudaminic acid synthase.	82.19
TIGR00973		494	leuA_bact 2-isopropylmalate synthase, bacterial ty	82.09
TIGR03128		206	RuMP_HxlA 3-hexulose-6-phosphate synthase. at the	81.96
PRK04180		293	pyridoxal biosynthesis lyase PdxS; Provisional	81.91
PRK08208		430	coproporphyrinogen III oxidase; Validated	81.76
PLN02321		632	2-isopropylmalate synthase	81.66
PRK14336		418	(dimethylallyl)adenosine tRNA methylthiotransferas	81.63
cd04724		242	Tryptophan_synthase_alpha Ttryptophan synthase (TR	81.58
TIGR01093		228	aroD 3-dehydroquinate dehydratase, type I. Type II	81.16
PRK13347		453	coproporphyrinogen III oxidase; Provisional	81.14
PLN02274		505	inosine-5'-monophosphate dehydrogenase	81.1
TIGR03128		206	RuMP_HxlA 3-hexulose-6-phosphate synthase. at the	81.05
PRK05692		287	hydroxymethylglutaryl-CoA lyase; Provisional	80.95
TIGR01163		210	rpe ribulose-phosphate 3-epimerase. This family co	80.69
KOG2367		560	consensus Alpha-isopropylmalate synthase/homocitra	80.59
PRK01130		221	N-acetylmannosamine-6-phosphate 2-epimerase; Provi	80.34

>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase	Back alignment and domain information

Probab=100.00  E-value=6.9e-164  Score=1347.43  Aligned_cols=630  Identities=86%  Similarity=1.321  Sum_probs=580.1

Q ss_pred             CCCCCCccccCCcccccCCCcccccccceeeeceeeeecccceeeeeccCCCCcccccccccCCCCCCCccCcccccccc
Q 006566            1 MATGTLPASFPGLKSRDSGLGFAKSVDFVRVCDFRKFKSGRRRFTVIRNSSNSSSDIAELQPASEGSPLLVPRQKYCESI   80 (640)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Yc~s~   80 (640)
                      ||+|..|+++.+++.+..+.+|.+..+|.+.       +++++.++.++. ++..++.++++++++++++.|.++||+|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Yc~s~   72 (733)
T PLN02925          1 MATGVLPAPLSGLKTSDSKLGFGKSMDFVRI-------CDVRSVSVIRNS-NTGPDLVELQPASEGSPLLVPRQKYCESI   72 (733)
T ss_pred             CCcCcCCccccceeccccccccccccchhhh-------hhhhhhhhhhcc-cccchhhcccccCCCCcccchhhhcCcch
Confidence            8999999999999999999999999999766       333455555553 56778999999999999999999999999


Q ss_pred             ccccCCCceeEEEceeecCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCC
Q 006566           81 HKTVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNY  160 (640)
Q Consensus        81 ~~~~Rr~Tr~V~VG~v~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~  160 (640)
                      |+|.||+||+|+||+|+|||+|||+|||||||+|+|+++||+||++|++|||||||+|||++++|+||++||++|+++|+
T Consensus        73 ~~~~Rr~Tr~V~VG~v~iGG~~PI~VQSMt~t~T~D~eatv~Qi~~l~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~  152 (733)
T PLN02925         73 HKTVRRKTRTVMVGNVALGSEHPIRIQTMTTTDTKDVEATVDQVMRIADKGADIVRITVQGKKEADACFEIKNTLVQKGY  152 (733)
T ss_pred             hccccccceEEEEcCEeECCCCceEEEecCCCCcccHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhhcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcceeeccCCCHHHHHHHhhhcCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCC
Q 006566          161 NIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNH  240 (640)
Q Consensus       161 ~iPLVADIHF~~~~Al~Aa~~v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNh  240 (640)
                      ++||||||||+|++|++|+++|||||||||||++++|+|+.++||||||++||+||+++|.|||++||++|+||||||||
T Consensus       153 ~iPLVADIHF~~~~Al~a~~~vdkiRINPGN~~~~~k~F~~~eYtdeeY~~Ele~i~e~f~~~v~~ak~~~~~iRIGvN~  232 (733)
T PLN02925        153 NIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEKLEYTEDDYQKELEHIEEVFTPLVEKCKKYGRAMRIGTNH  232 (733)
T ss_pred             CCCEEEecCCCHHHHHHHHHhcCCeEECCcccCCccccccccccchhhhhhhHHHHHHHHHHHHHHHHHCCCCEEEecCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcHhHHHHhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEEeCChhhHHHHHHHHHHHHHHcCCCcceEEEeecCCCCC
Q 006566          241 GSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGE  320 (640)
Q Consensus       241 GSLs~ril~ryGdtp~gMVeSAle~~~i~e~~~F~diviSmKsSn~~~mV~AyRlL~~~m~~~g~dyPLHLGVTEAG~ge  320 (640)
                      ||||+|||+||||||+|||||||||++|||++||+||||||||||+++||+|||+|+++|+++|++|||||||||||+++
T Consensus       233 GSLs~ri~~~yGdtp~gmVeSAle~~~i~e~~~f~diviS~KsSn~~~~V~AyR~La~~L~~~g~~yPLhLgvTEAG~~e  312 (733)
T PLN02925        233 GSLSDRIMSYYGDSPRGMVESAFEFARICRKLDYHNFVFSMKASNPVVMVQAYRLLVAEMYVLGWDYPLHLGVTEAGEGE  312 (733)
T ss_pred             cCchHHHHHHhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEEcCChHHHHHHHHHHHHHHHhcCCCCceEEEEecCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceeehHHHHHHHhhhcCCcEEEeecCCCCchhhHHHHHHHhhcccCcccccCchhhHHhhcccccccccccccccccCC
Q 006566          321 DGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRLANLGMRAAELQQGVAPFEEKHRHYFDFQRRSGQLPIQKEG  400 (640)
Q Consensus       321 dGrIKSAiGIG~LL~DGIGDTIRVSLTedP~~Ei~va~~ILq~~~R~CGRt~dl~~~~~~i~~l~~~~~~vmgciVNGpG  400 (640)
                      +|+||||+|||+||.||||||||||||+||++|||||+.|+++..+.......+..+.+.-+++++++||....++|-.|
T Consensus       313 dg~IKSAigiGaLL~DGIGDTIRVSlt~dP~~Evpva~~Lv~~~~~~~~~~~~i~~~~~~~~d~~~~~RR~~~~~~~igg  392 (733)
T PLN02925        313 DGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEEEIDPCRRLANLGMKAAALQQGVAPFEEKHRDYFDFQRRTGQLPVQKEG  392 (733)
T ss_pred             CceehhHHHHHHHHhcCCccEEEEECCCCchhhchHHHHHHHHHHhcccccccCCccccCCCCCCCcccccCCcccccCc
Confidence            99999999999999999999999999999999999999999944443222222344444456788889988877888777


Q ss_pred             cccccccccccCCeEeeeccccccccchhhhhhhhhhhhhCCCCCCCCCcceEecCCCCCCCchhHHHHhHHhhhcccce
Q 006566          401 EEVDYRGVLHRDGSVLMSVSLDQLKAPELLYKSLAAKLVVGMPFKDLATVDSILLRELPSVDDHDARLALKRLVDISMGV  480 (640)
Q Consensus       401 E~AD~g~V~~~~GkVv~~v~~~~l~~~~~~y~~~~~k~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~lk~l~~~~~~~  480 (640)
                      +..++..+.+++|.|+..++.++|..++++|+.+++++.+|+++++.+++|+||++++|+..+.+.+.++++++|+++|+
T Consensus       393 ~~~p~~vi~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~D~i~l~~~~~~~~~~~~~~~~~~~d~~~~~  472 (733)
T PLN02925        393 EEVDYRNVLHRDGSVLMSVSLDQLKAPELLYRSLAAKLVVGMPFKDLATVDSILLRELPPVDDEEARLALKRLIDVSMGV  472 (733)
T ss_pred             ccCCeeEEEeccccccccccHhhhccchhhhhccchhhccCcccccccCcceEeecccCCccchhhhhhhheeeeccccc
Confidence            78888888899999999999999999999999999999999999999999999999988877767778889999999999


Q ss_pred             eccccccccCCCCcccceeehhhhhhcccccCCCCceEEEeecCCCCHHHHHhhhcCCceEEEeecCCCCCCCchhHHHH
Q 006566          481 ITPLSEQLTKPLPHAMVLVNLQELSTGAYKLLPEGTRLVVSLRGDESYEELEILKDIDATMILHDLPFNEDKIGRVQAAR  560 (640)
Q Consensus       481 l~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~lk~~~~~v~il~~~~~~~~~~~v~~~R  560 (640)
                      +.|.++....|.++++|+|+..++....+...++..+|+++.++++++|.+++++.++++++++..|...++.|+|+++|
T Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~e~l~~~~~~~~~~~il~s~~~~~~~~~v~~~R  552 (733)
T PLN02925        473 IAPLSEQLTKPLPNAMALVNLKELSSGAHKLLPEGTRLAVTLRGDEPYEELEILKDVDATMLLHDVPFTEDKVSRVHAAR  552 (733)
T ss_pred             ccccchhcccccccceeeeehhhhcccccccccccceeEEeccCCccHHHHHHhhcCCceEEEEeccccccccchHHHHH
Confidence            77754544667888899999988764445555667799999999999999999999999999988333348899999999


Q ss_pred             HHHHHHHHCCCCCCEEEEeccCCCCCccchHHHHHHhhhhhhhccccceeeecCCCCChhhhhhhhhhhhhhcccccc
Q 006566          561 RLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNVGALLVDGLGDGLLLEAPGQDFDFLRDTSFNLLQGVCLMSI  638 (640)
Q Consensus       561 ~l~~~L~~~g~~~PVi~~~~y~~~~~~~~~~l~aa~d~GaLL~DGlGDGi~l~~~~~~~~~~~~~aF~ILQaaR~r~~  638 (640)
                      |||++|+++|+++||||+++|++..++++++|++|+++|+||+|||||||||..++.+......++|+||||+|+|++
T Consensus       553 rl~~~l~~~g~~~Pvi~~~~~~~~~~~~~~~i~s~~~~g~Ll~dGiGD~i~i~~~~~~~~~~~~~~~~ILQ~~~~R~~  630 (733)
T PLN02925        553 RLFEYLSSNSLNFPVIHHIQFPAGIHRDDLVIQAGSQAGALLVDGLGDGVLLEAPDQDFDFLRNTSFGLLQGCRMRNT  630 (733)
T ss_pred             HHHHHHHhcCCCCCEEEEEecCCCCchhHHHHHHHHHHHHHHhccCcceEEEeCCCCCHHHHHHHHHHHHHHhCcccc
Confidence            999999999999999999999987678999999999999999999999999998887888889999999999999985

>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional	Back alignment and domain information

>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated	Back alignment and domain information

>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase	Back alignment and domain information

>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli	Back alignment and domain information

>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed	Back alignment and domain information

>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]	Back alignment and domain information

>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase	Back alignment and domain information

>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional	Back alignment and domain information

>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated	Back alignment and domain information

>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional	Back alignment and domain information

>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli	Back alignment and domain information

>cd00423 Pterin_binding Pterin binding enzymes	Back alignment and domain information

>cd00739 DHPS DHPS subgroup of Pterin binding enzymes	Back alignment and domain information

>TIGR00284 dihydropteroate synthase-related protein	Back alignment and domain information

>TIGR01496 DHPS dihydropteroate synthase	Back alignment and domain information

>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated	Back alignment and domain information

>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional	Back alignment and domain information

>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit	Back alignment and domain information

>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional	Back alignment and domain information

>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed	Back alignment and domain information

>PRK11613 folP dihydropteroate synthase; Provisional	Back alignment and domain information

>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase	Back alignment and domain information

>PRK09490 metH B12-dependent methionine synthase; Provisional	Back alignment and domain information

>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain	Back alignment and domain information

>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative	Back alignment and domain information

>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder	Back alignment and domain information

>PRK13753 dihydropteroate synthase; Provisional	Back alignment and domain information

>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members	Back alignment and domain information

>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed	Back alignment and domain information

>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain	Back alignment and domain information

>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed	Back alignment and domain information

>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase	Back alignment and domain information

>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional	Back alignment and domain information

>cd00740 MeTr MeTr subgroup of pterin binding enzymes	Back alignment and domain information

>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional	Back alignment and domain information

>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase	Back alignment and domain information

>PRK00979 tetrahydromethanopterin S-methyltransferase subunit H; Provisional	Back alignment and domain information

>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional	Back alignment and domain information

>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain	Back alignment and domain information

>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea	Back alignment and domain information

>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional	Back alignment and domain information

>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3	Back alignment and domain information

>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional	Back alignment and domain information

>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase	Back alignment and domain information

>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily	Back alignment and domain information

>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain	Back alignment and domain information

>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated	Back alignment and domain information

>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed	Back alignment and domain information

>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa	Back alignment and domain information

>PRK11858 aksA trans-homoaconitate synthase; Reviewed	Back alignment and domain information

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase	Back alignment and domain information

>TIGR02660 nifV_homocitr homocitrate synthase NifV	Back alignment and domain information

>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type	Back alignment and domain information

>PRK15129 L-Ala-D/L-Glu epimerase; Provisional	Back alignment and domain information

>PLN02746 hydroxymethylglutaryl-CoA lyase	Back alignment and domain information

>PF05853 DUF849: Prokaryotic protein of unknown function (DUF849); InterPro: IPR008567 This family consists of several hypothetical prokaryotic proteins with no known function	Back alignment and domain information

>PRK09997 hydroxypyruvate isomerase; Provisional	Back alignment and domain information

>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair	Back alignment and domain information

>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases	Back alignment and domain information

>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain	Back alignment and domain information

>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase	Back alignment and domain information

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional	Back alignment and domain information

>PRK09389 (R)-citramalate synthase; Provisional	Back alignment and domain information

>cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase	Back alignment and domain information

>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain	Back alignment and domain information

>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain	Back alignment and domain information

>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional	Back alignment and domain information

>cd00452 KDPG_aldolase KDPG and KHG aldolase	Back alignment and domain information

>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2	Back alignment and domain information

>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily	Back alignment and domain information

>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily	Back alignment and domain information

>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate	Back alignment and domain information

>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional	Back alignment and domain information

>PRK07379 coproporphyrinogen III oxidase; Provisional	Back alignment and domain information

>PRK13523 NADPH dehydrogenase NamA; Provisional	Back alignment and domain information

>PRK09989 hypothetical protein; Provisional	Back alignment and domain information

>TIGR01093 aroD 3-dehydroquinate dehydratase, type I	Back alignment and domain information

>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain	Back alignment and domain information

>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1	Back alignment and domain information

>COG1410 MetH Methionine synthase I, cobalamin-binding domain [Amino acid transport and metabolism]	Back alignment and domain information

>PRK13111 trpA tryptophan synthase subunit alpha; Provisional	Back alignment and domain information

>PLN02424 ketopantoate hydroxymethyltransferase	Back alignment and domain information

>PRK09249 coproporphyrinogen III oxidase; Provisional	Back alignment and domain information

>PRK05799 coproporphyrinogen III oxidase; Provisional	Back alignment and domain information

>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene []	Back alignment and domain information

>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain	Back alignment and domain information

>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed	Back alignment and domain information

>PLN02274 inosine-5'-monophosphate dehydrogenase	Back alignment and domain information

>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3	Back alignment and domain information

>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]	Back alignment and domain information

>PRK08446 coproporphyrinogen III oxidase; Provisional	Back alignment and domain information

>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain	Back alignment and domain information

>TIGR00492 alr alanine racemase	Back alignment and domain information

>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional	Back alignment and domain information

>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5	Back alignment and domain information

>PRK08599 coproporphyrinogen III oxidase; Provisional	Back alignment and domain information

>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4	Back alignment and domain information

>PRK14017 galactonate dehydratase; Provisional	Back alignment and domain information

>PRK06843 inosine 5-monophosphate dehydrogenase; Validated	Back alignment and domain information

>cd06815 PLPDE_III_AR_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase-like 1	Back alignment and domain information

>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional	Back alignment and domain information

>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate	Back alignment and domain information

>TIGR00262 trpA tryptophan synthase, alpha subunit	Back alignment and domain information

>PRK05628 coproporphyrinogen III oxidase; Validated	Back alignment and domain information

>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa	Back alignment and domain information

>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase	Back alignment and domain information

>cd00945 Aldolase_Class_I Class I aldolases	Back alignment and domain information

>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain	Back alignment and domain information

>cd00945 Aldolase_Class_I Class I aldolases	Back alignment and domain information

>PRK06245 cofG FO synthase subunit 1; Reviewed	Back alignment and domain information

>TIGR00035 asp_race aspartate racemase	Back alignment and domain information

>PRK01261 aroD 3-dehydroquinate dehydratase; Provisional	Back alignment and domain information

>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure	Back alignment and domain information

>PRK05660 HemN family oxidoreductase; Provisional	Back alignment and domain information

>TIGR01182 eda Entner-Doudoroff aldolase	Back alignment and domain information

>PRK00915 2-isopropylmalate synthase; Validated	Back alignment and domain information

>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids	Back alignment and domain information

>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides	Back alignment and domain information

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed	Back alignment and domain information

>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism	Back alignment and domain information

>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain	Back alignment and domain information

>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase	Back alignment and domain information

>PRK00208 thiG thiazole synthase; Reviewed	Back alignment and domain information

>TIGR03586 PseI pseudaminic acid synthase	Back alignment and domain information

>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type	Back alignment and domain information

>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase	Back alignment and domain information

>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional	Back alignment and domain information

>PRK08208 coproporphyrinogen III oxidase; Validated	Back alignment and domain information

>PLN02321 2-isopropylmalate synthase	Back alignment and domain information

>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional	Back alignment and domain information

>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA)	Back alignment and domain information

>TIGR01093 aroD 3-dehydroquinate dehydratase, type I	Back alignment and domain information

>PRK13347 coproporphyrinogen III oxidase; Provisional	Back alignment and domain information

>PLN02274 inosine-5'-monophosphate dehydrogenase	Back alignment and domain information

>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase	Back alignment and domain information

>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional	Back alignment and domain information

>TIGR01163 rpe ribulose-phosphate 3-epimerase	Back alignment and domain information

>KOG2367 consensus Alpha-isopropylmalate synthase/homocitrate synthase [Amino acid transport and metabolism]	Back alignment and domain information

>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		640
3noy_A		366	Crystal Structure Of Ispg (Gcpe) Length = 366		2e-41
2y0f_A		406	Structure Of Gcpe (Ispg) From Thermus Thermophilus		4e-34

>pdb|3NOY|A Chain A, Crystal Structure Of Ispg (Gcpe) Length = 366

Back alignment and structure

Iteration: 1

Score = 167 bits (423), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 110/285 (38%), Positives = 156/285 (54%), Gaps = 35/285 (12%) Query: 85 RRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKRE 144 +RKTR + VGNV IG + PI VQ+MT+ T DV T+ ++ R+ + G ++VR+ V K + Sbjct: 13 KRKTRQIRVGNVKIGGDAPIVVQSMTSTKTHDVEATLNQIKRLYEAGCEIVRVAVPHKED 72 Query: 145 ADACFEIKNSLVQKNYNIPLVADIHFAPSVA-LRVAECFDKIRVNPGNFADRRAQFEQLE 203 +A EI K +P++ADIHFAPS A L + + IR+NPGN E +E Sbjct: 73 VEALEEI-----VKKSPMPVIADIHFAPSYAFLSMEKGVHGIRINPGNIGKEEIVREIVE 127 Query: 204 YTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYG-DSPRGMVESA 262 K+ G AVRIG N GSL ++ YG S + ESA Sbjct: 128 EA----------------------KRRGVAVRIGVNSGSLEKDLLEKYGYPSAEALAESA 165 Query: 263 FEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDG 322 ++ K F N+ S+K S+ + V+A L+ AE D PLH+G+TEAG G G Sbjct: 166 LRWSEKFEKWGFTNYKVSIKGSDVLQNVRA-NLIFAERT----DVPLHIGITEAGMGTKG 220 Query: 323 RMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRR-LANLGMR 366 +KS++GIG LL G+GDT+RVSLT+ P E++ L +LG+R Sbjct: 221 IIKSSVGIGILLYMGIGDTVRVSLTDDPVVEVETAYEILKSLGLR 265

PyMOL of 3noy

>pdb|2Y0F|A Chain A, Structure Of Gcpe (Ispg) From Thermus Thermophilus Hb27 Length = 406

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		640
3noy_A		366	4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth;	1e-104
2y0f_A		406	4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth;	6e-97
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-12

>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus} Length = 366	Back alignment and structure

 Score =  319 bits (819), Expect = e-104
 Identities = 110/285 (38%), Positives = 157/285 (55%), Gaps = 35/285 (12%)

Query: 85  RRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKRE 144
           +RKTR + VGNV IG + PI VQ+MT+  T DV  T+ ++ R+ + G ++VR+ V  K +
Sbjct: 13  KRKTRQIRVGNVKIGGDAPIVVQSMTSTKTHDVEATLNQIKRLYEAGCEIVRVAVPHKED 72

Query: 145 ADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGNFADRRAQFEQLE 203
            +A  EI      K   +P++ADIHFAPS A    E     IR+NPGN            
Sbjct: 73  VEALEEIV-----KKSPMPVIADIHFAPSYAFLSMEKGVHGIRINPGNIGKE-------- 119

Query: 204 YTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYG-DSPRGMVESA 262
                     + + E+    VE+ K+ G AVRIG N GSL   ++  YG  S   + ESA
Sbjct: 120 ----------EIVREI----VEEAKRRGVAVRIGVNSGSLEKDLLEKYGYPSAEALAESA 165

Query: 263 FEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDG 322
             ++    K  F N+  S+K S+ +  V+A  +  AE      D PLH+G+TEAG G  G
Sbjct: 166 LRWSEKFEKWGFTNYKVSIKGSDVLQNVRANLIF-AERT----DVPLHIGITEAGMGTKG 220

Query: 323 RMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRR-LANLGMR 366
            +KS++GIG LL  G+GDT+RVSLT+ P  E++     L +LG+R
Sbjct: 221 IIKSSVGIGILLYMGIGDTVRVSLTDDPVVEVETAYEILKSLGLR 265

PyMOL of 3noy

>2y0f_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; oxidoreductase, isoprenoid biosynthesis, non-mevalonate PATH; 2.50A {Thermus thermophilus} Length = 406	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		640
4g9p_A		406	4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth;	100.0
3noy_A		366	4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth;	100.0
1zco_A		262	2-dehydro-3-deoxyphosphoheptonate aldolase; arabin	99.39
3nvt_A		385	3-deoxy-D-arabino-heptulosonate 7-phosphate synth;	98.63
3noy_A		366	4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth;	98.28
1tx2_A		297	DHPS, dihydropteroate synthase; folate biosynthesi	97.69
1eye_A		280	DHPS 1, dihydropteroate synthase I; alpha-beta bar	97.64
2yci_X		271	5-methyltetrahydrofolate corrinoid/iron sulfur PR	97.53
4djd_C		446	C/Fe-SP, corrinoid/iron-sulfur protein large subun	97.52
2vp8_A		318	Dihydropteroate synthase 2; RV1207 transferase, fo	97.49
2h9a_A		445	Carbon monoxide dehydrogenase corrinoid/iron- sulf	97.38
2h9a_B		310	CO dehydrogenase/acetyl-COA synthase, iron- sulfur	97.37
3k13_A		300	5-methyltetrahydrofolate-homocysteine methyltrans;	97.23
1aj0_A		282	DHPS, dihydropteroate synthase; antibiotic, resist	97.21
2y5s_A		294	DHPS, dihydropteroate synthase; transferase, folat	97.2
2dqw_A		294	Dihydropteroate synthase; dimer, structural genomi	97.12
1f6y_A		262	5-methyltetrahydrofolate corrinoid/iron sulfur PR	97.09
4djd_D		323	C/Fe-SP, corrinoid/iron-sulfur protein small subun	96.97
4g9p_A		406	4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth;	96.94
1vs1_A		276	3-deoxy-7-phosphoheptulonate synthase; (beta/alpha	96.93
3tr9_A		314	Dihydropteroate synthase; biosynthesis of cofactor	96.81
1q7z_A		566	5-methyltetrahydrofolate S-homocysteine methyltran	96.78
4h3d_A		258	3-dehydroquinate dehydratase; structural genomics,	96.71
4hb7_A		270	Dihydropteroate synthase; transferase; 1.95A {Stap	96.64
2yr1_A		257	3-dehydroquinate dehydratase; amino acid biosynthe	96.59
3cqj_A		295	L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barre	96.52
1vr6_A		350	Phospho-2-dehydro-3-deoxyheptonate aldolase; TM034	96.49
3o1n_A		276	3-dehydroquinate dehydratase; structural genomics,	96.26
2vef_A		314	Dihydropteroate synthase; antibiotic resistance, t	96.2
1nvm_A		345	HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered	96.1
3dx5_A		286	Uncharacterized protein ASBF; beta-alpha barrel, p	96.09
2wqp_A		349	Polysialic acid capsule biosynthesis protein SIAC;	96.09
1k77_A		260	EC1530, hypothetical protein YGBM; TIM barrel, str	96.07
1y0e_A		223	Putative N-acetylmannosamine-6-phosphate 2-epimer;	96.0
3kws_A		287	Putative sugar isomerase; structural genomics, joi	95.81
3mcm_A		442	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine	95.69
3qc0_A		275	Sugar isomerase; TIM barrel, structural genomics,	95.42
1vli_A		385	Spore coat polysaccharide biosynthesis protein SP;	94.82
3ivs_A		423	Homocitrate synthase, mitochondrial; TIM barrel, m	94.79
2qkf_A		280	3-deoxy-D-manno-octulosonic acid 8- phosphate SYN;	94.72
2ftp_A		302	Hydroxymethylglutaryl-COA lyase; structural genomi	94.65
1o60_A		292	2-dehydro-3-deoxyphosphooctonate aldolase; structu	94.41
1i60_A		278	IOLI protein; beta barrel, structural genomics, PS	94.39
1xla_A		394	D-xylose isomerase; isomerase(intramolecular oxido	94.28
3cny_A		301	Inositol catabolism protein IOLE; xylose isomerase	94.21
3p3b_A		392	Mandelate racemase/muconate lactonizing protein; e	94.06
2rdx_A		379	Mandelate racemase/muconate lactonizing enzyme, P;	94.04
2qw5_A		335	Xylose isomerase-like TIM barrel; putative sugar p	94.03
2cw6_A		298	Hydroxymethylglutaryl-COA lyase, mitochondrial; HM	94.02
1z41_A		338	YQJM, probable NADH-dependent flavin oxidoreductas	93.97
2qgy_A		391	Enolase from the environmental genome shotgun sequ	93.76
3tva_A		290	Xylose isomerase domain protein TIM barrel; struct	93.74
2hk0_A		309	D-psicose 3-epimerase; TIM-barrel, isomerase; 2.00	93.71
1ydn_A		295	Hydroxymethylglutaryl-COA lyase; TIM-barrel protei	93.71
1wa3_A		205	2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG,	93.49
3ble_A		337	Citramalate synthase from leptospira interrogans;	93.44
2pgw_A		384	Muconate cycloisomerase; enolase superfamily, octa	93.36
3ngf_A		269	AP endonuclease, family 2; structural genomics, se	93.36
3fs2_A		298	2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid,	93.29
2ztj_A		382	Homocitrate synthase; (beta/alpha)8 TIM barrel, su	93.21
3vni_A		294	Xylose isomerase domain protein TIM barrel; D-psic	93.01
2q02_A		272	Putative cytoplasmic protein; structural genomics,	92.87
3obe_A		305	Sugar phosphate isomerase/epimerase; structural ge	92.84
3vnd_A		267	TSA, tryptophan synthase alpha chain; psychrophili	92.82
3mqt_A		394	Mandelate racemase/muconate lactonizing protein; P	92.56
2ovl_A		371	Putative racemase; structural genomics, PSI-2, pro	92.29
2zvr_A		290	Uncharacterized protein TM_0416; hyperthermophIle,	92.08
3mkc_A		394	Racemase; metabolic process, PSI2, NYSGXRC, struct	92.08
3igs_A		232	N-acetylmannosamine-6-phosphate 2-epimerase 2; ene	92.08
1ps9_A		671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	92.06
1rvk_A		382	Isomerase/lactonizing enzyme; enolase superfamily,	92.04
3qxb_A		316	Putative xylose isomerase; structural genomics, jo	91.81
3eeg_A		325	2-isopropylmalate synthase; 11106D, beta barrel, P	91.61
1muw_A		386	Xylose isomerase; atomic resolution, disorder; 0.8	91.52
3i4k_A		383	Muconate lactonizing enzyme; structural genomics,	91.5
3p6l_A		262	Sugar phosphate isomerase/epimerase; TIM barrel, s	91.26
3ktc_A		333	Xylose isomerase; putative sugar isomerase, struct	91.18
1yxy_A		234	Putative N-acetylmannosamine-6-phosphate 2-epimer;	91.11
2qul_A		290	D-tagatose 3-epimerase; beta/alpha barrel, isomera	91.08
2hzg_A		401	Mandelate racemase/muconate lactonizing enzyme/EN	91.05
3sjn_A		374	Mandelate racemase/muconate lactonizing protein; e	90.98
1mdl_A		359	Mandelate racemase; isomerase, mandelate pathway,	90.94
1vzw_A		244	Phosphoribosyl isomerase A; histidine biosynthesis	90.8
4e4u_A		412	Mandalate racemase/muconate lactonizing enzyme; ma	90.79
2poz_A		392	Putative dehydratase; octamer, structural genomics	90.61
3ewb_X		293	2-isopropylmalate synthase; LEUA, structural genom	90.56
2gl5_A		410	Putative dehydratase protein; structural genomics,	90.54
1kcz_A		413	Beta-methylaspartase; beta zigzag, alpha/beta-barr	90.49
1chr_A		370	Chloromuconate cycloisomerase; 3.00A {Ralstonia eu	90.48
1kko_A		413	3-methylaspartate ammonia-lyase; enolase superfami	90.39
3tml_A		288	2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid,	90.37
2v82_A		212	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l	90.31
2zad_A		345	Muconate cycloisomerase; muconate lactonizing enzy	90.28
2nql_A		388	AGR_PAT_674P, isomerase/lactonizing enzyme; enolas	90.21
2ps2_A		371	Putative mandelate racemase/muconate lactonizing e	90.18
1rd5_A		262	Tryptophan synthase alpha chain, chloroplast; hydr	90.16
3go2_A		409	Putative L-alanine-DL-glutamate epimerase; structu	90.1
2bmb_A		545	Folic acid synthesis protein FOL1; folate biosynth	90.0
4e5t_A		404	Mandelate racemase / muconate lactonizing enzyme,	89.83
4dwd_A		393	Mandelate racemase/muconate lactonizing enzyme, C	89.78
1vhc_A		224	Putative KHG/KDPG aldolase; structural genomics, u	89.76
3o07_A		291	Pyridoxine biosynthesis protein SNZ1; (beta/alpha)	89.68
3q58_A		229	N-acetylmannosamine-6-phosphate 2-epimerase; TIM b	89.66
3f4w_A		211	Putative hexulose 6 phosphate synthase; humps, mal	89.65
1ydo_A		307	HMG-COA lyase; TIM-barrel protein, structural geno	89.57
3gd6_A		391	Muconate cycloisomerase; structural genomics, NYSG	89.56
3ozy_A		389	Putative mandelate racemase; beta-alpha barrel, en	89.5
3l23_A		303	Sugar phosphate isomerase/epimerase; structural ge	89.38
3q45_A		368	Mandelate racemase/muconate lactonizing enzyme FA	89.28
3v3w_A		424	Starvation sensing protein RSPA; enolase, enzyme f	89.07
3bjs_A		428	Mandelate racemase/muconate lactonizing enzyme; en	88.82
2og9_A		393	Mandelate racemase/muconate lactonizing enzyme; NY	88.72
1nu5_A		370	Chloromuconate cycloisomerase; enzyme, dehalogenat	88.59
3lmz_A		257	Putative sugar isomerase; structural genomics, joi	88.55
2o56_A		407	Putative mandelate racemase; dehydratase, structur	88.53
2qde_A		397	Mandelate racemase/muconate lactonizing enzyme FA	88.52
2gdq_A		382	YITF; mandelate racemase/muconate lactonizing enzy	88.41
1sjd_A		368	N-acylamino acid racemase; lyase, isomerase; HET:	88.37
1bxb_A		387	Xylose isomerase; xylose metabolism; 2.20A {Thermu	88.27
1r30_A		369	Biotin synthase; SAM radical protein, TIM barrel,	88.18
3rcy_A		433	Mandelate racemase/muconate lactonizing enzyme-LI	88.05
3ayv_A		254	Putative uncharacterized protein TTHB071; structur	87.95
3rr1_A		405	GALD, putative D-galactonate dehydratase; enolase,	87.82
2p8b_A		369	Mandelate racemase/muconate lactonizing enzyme fam	87.78
3o1n_A		276	3-dehydroquinate dehydratase; structural genomics,	87.46
4e38_A		232	Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho	87.37
3e02_A		311	Uncharacterized protein DUF849; structural genomic	87.37
3rmj_A		370	2-isopropylmalate synthase; LEUA, truncation, neis	87.35
3r4e_A		418	Mandelate racemase/muconate lactonizing enzyme; en	87.22
2pp0_A		398	L-talarate/galactarate dehydratase; enolase superf	87.16
3stp_A		412	Galactonate dehydratase, putative; PSI biology, st	87.1
1qop_A		268	Tryptophan synthase alpha chain; lyase, carbon-oxy	87.04
1tkk_A		366	Similar to chloromuconate cycloisomerase; epimeras	86.99
4dxk_A		400	Mandelate racemase / muconate lactonizing enzyme p	86.92
3vcn_A		425	Mannonate dehydratase; enolase, magnesium binding	86.73
2ox4_A		403	Putative mandelate racemase; enolase, dehydratase,	86.71
2x7v_A		287	Probable endonuclease 4; DNA repair protein, metal	86.7
3lot_A		314	Uncharacterized protein; protein of unknown functi	86.61
2zds_A		340	Putative DNA-binding protein; TIM-barrel fold, str	86.54
1tzz_A		392	Hypothetical protein L1841; structural genomics, m	86.46
2g0w_A		296	LMO2234 protein; putative sugar isomerase, structu	86.44
2fym_A		431	Enolase; RNA degradosome, enolase, lyase; 1.60A {E	86.43
3eez_A		378	Putative mandelate racemase/muconate lactonizing e	86.36
1mxs_A		225	KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a	86.29
1wbh_A		214	KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli}	86.28
3gr7_A		340	NADPH dehydrogenase; flavin, FMN, beta-alpha-barre	86.23
3dip_A		410	Enolase; structural genomics, isomerase, PSI-2, pr	86.19
3e49_A		311	Uncharacterized protein DUF849 with A TIM barrel;	86.17
1sfl_A		238	3-dehydroquinate dehydratase; 3-dehydroquinase, en	86.07
2qq6_A		410	Mandelate racemase/muconate lactonizing enzyme- li	86.05
1geq_A		248	Tryptophan synthase alpha-subunit; hyperthermophIl	85.86
3vav_A		275	3-methyl-2-oxobutanoate hydroxymethyltransferase;	85.85
3nav_A		271	Tryptophan synthase alpha chain; alpha subunit, st	85.8
3sz8_A		285	2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgci	85.75
4g38_A		570	SIR-HP, sirhp, sulfite reductase [NADPH] hemoprote	85.71
3mwc_A		400	Mandelate racemase/muconate lactonizing protein; e	85.66
1ka9_F		252	Imidazole glycerol phosphtate synthase; riken stru	85.57
1h5y_A		253	HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py	85.45
1v77_A		212	PH1877P, hypothetical protein PH1877; RNAse P prot	85.45
4fxs_A		496	Inosine-5'-monophosphate dehydrogenase; structural	85.37
3ddm_A		392	Putative mandelate racemase/muconate lactonizing e	85.31
3jva_A		354	Dipeptide epimerase; enolase superfamily, isomeras	85.22
2qdd_A		378	Mandelate racemase/muconate lactonizing enzyme; en	84.72
2hxt_A		441	L-fuconate dehydratase; enolase superfamily, D-ery	84.43
1sfl_A		238	3-dehydroquinate dehydratase; 3-dehydroquinase, en	84.42
1xim_A		393	D-xylose isomerase; isomerase(intramolecular oxido	84.39
2rdx_A		379	Mandelate racemase/muconate lactonizing enzyme, P;	84.27
3u0h_A		281	Xylose isomerase domain protein; structural genomi	83.9
2yr1_A		257	3-dehydroquinate dehydratase; amino acid biosynthe	83.89
3khj_A		361	Inosine-5-monophosphate dehydrogenase; enzyme-inhi	83.86
2ekc_A		262	AQ_1548, tryptophan synthase alpha chain; structur	83.73
1r0m_A		375	N-acylamino acid racemase; isomerase; 1.30A {Deino	83.71
3ro6_B		356	Putative chloromuconate cycloisomerase; TIM barrel	83.67
2oz8_A		389	MLL7089 protein; structural genomics, unknown func	83.46
3jva_A		354	Dipeptide epimerase; enolase superfamily, isomeras	83.34
2nx9_A		464	Oxaloacetate decarboxylase 2, subunit alpha; carbo	83.02
4dye_A		398	Isomerase; enolase family protein, EFI, enzym func	82.87
3my9_A		377	Muconate cycloisomerase; structural genomics, PSI-	82.81
3q58_A		229	N-acetylmannosamine-6-phosphate 2-epimerase; TIM b	82.78
3fcp_A		381	L-Ala-D/L-Glu epimerase, A muconate lactonizing en	82.7
3tji_A		422	Mandelate racemase/muconate lactonizing enzyme, N	82.55
3r0u_A		379	Enzyme of enolase superfamily; structural genomics	82.15
2yw3_A		207	4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deox	81.98
3s5s_A		389	Mandelate racemase/muconate lactonizing enzyme FA	81.9
1jpd_X		324	L-Ala-D/L-Glu epimerase; enolase superfamily, muco	81.89
2r14_A		377	Morphinone reductase; H-tunnelling, flavoprotein,	81.89
1qtw_A		285	Endonuclease IV; DNA repair enzyme, TIM barrel, tr	81.82
3dgb_A		382	Muconate cycloisomerase; muconate lactonizing enzy	81.82
3igs_A		232	N-acetylmannosamine-6-phosphate 2-epimerase 2; ene	81.68
3u9i_A		393	Mandelate racemase/muconate lactonizing enzyme, C	81.68
2ocz_A		231	3-dehydroquinate dehydratase; structural genomics,	81.6
3eez_A		378	Putative mandelate racemase/muconate lactonizing e	81.51
3i6e_A		385	Muconate cycloisomerase I; structural genomics, NY	81.4
3tj4_A		372	Mandelate racemase; enolase, dehydratase, enzyme f	81.32
3v5c_A		392	Mandelate racemase/muconate lactonizing protein; e	81.31
2v5j_A		287	2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; l	81.21
3tqp_A		428	Enolase; energy metabolism, lyase; 2.20A {Coxiella	81.2
3ajx_A		207	3-hexulose-6-phosphate synthase; HPS, OMPDC supraf	80.94
4e4f_A		426	Mannonate dehydratase; magnesium binding, enzyme f	80.61
1rvk_A		382	Isomerase/lactonizing enzyme; enolase superfamily,	80.48
3dg3_A		367	Muconate cycloisomerase; muconate lactonizing enzy	80.47
2oz8_A		389	MLL7089 protein; structural genomics, unknown func	80.43
2y88_A		244	Phosphoribosyl isomerase A; aromatic amino acid bi	80.38
3rcy_A		433	Mandelate racemase/muconate lactonizing enzyme-LI	80.32
4h3d_A		258	3-dehydroquinate dehydratase; structural genomics,	80.21

>4g9p_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; oxidoreductase, isoprenoid biosynthesis, non mevalonate PATH iron-sulphur-cluster; HET: CDI MES; 1.55A {Thermus thermophilus} PDB: 2y0f_A*	Back alignment and structure

Probab=100.00  E-value=1.9e-116  Score=930.17  Aligned_cols=322  Identities=34%  Similarity=0.531  Sum_probs=295.4

Q ss_pred             cccCCCceeEEEceeecCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCCC
Q 006566           82 KTVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYN  161 (640)
Q Consensus        82 ~~~Rr~Tr~V~VG~v~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~~  161 (640)
                      ++.||+||+|+||+|+|||+|||+|||||||+|.|+++||+||++|++|||||||+|||++++|++|++|+++|++.|++
T Consensus         2 ~~~Rr~Tr~V~VG~v~IGG~~PI~VQSMtnT~T~Dv~aTv~QI~~L~~aG~eiVRvaVp~~~~A~al~~I~~~l~~~~~~   81 (406)
T 4g9p_A            2 EGMRRPTPTVYVGRVPIGGAHPIAVQSMTNTPTRDVEATTAQVLELHRAGSEIVRLTVNDEEAAKAVPEIKRRLLAEGVE   81 (406)
T ss_dssp             CCCCCCCCCEEETTEEESTTSCCEEEEECCSCTTCHHHHHHHHHHHHHHTCSEEEEECCSHHHHHHHHHHHHHHHHTTCC
T ss_pred             CCCCccCeeEEEcCEeeCCCCceeeeecCCCCcccHHHHHHHHHHHHHcCCCEEEEecCCHHHHHhHHHHHHHHHhcCCC
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceeeccCCCHHHHHHH----hhhcCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEe
Q 006566          162 IPLVADIHFAPSVALRV----AECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIG  237 (640)
Q Consensus       162 iPLVADIHF~~~~Al~A----a~~v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIG  237 (640)
                      +||||||||||++|+.|    ++.++||||||||||+++++                  +++|.++|++||++|+|||||
T Consensus        82 vPLVADiHF~~~~al~a~~~~a~~~dkiRINPGNig~~~k~------------------~e~~~~vv~~ak~~~~pIRIG  143 (406)
T 4g9p_A           82 VPLVGDFHFNGHLLLRKYPKMAEALDKFRINPGTLGRGRHK------------------DEHFAEMIRIAMDLGKPVRIG  143 (406)
T ss_dssp             CCEEEECCSSHHHHHHHCHHHHHHCSEEEECTTSSCSTHHH------------------HHHHHHHHHHHHHHTCCEEEE
T ss_pred             CceEeeecccHHHHHHHHHHHHhHHhhcccCccccCccccH------------------HHHHHHHHHHHHHccCCceec
Confidence            99999999999999964    34599999999999987653                  578999999999999999999


Q ss_pred             eCCCCCcHhHHHHhCC------C--------hHHHHHHHHHHHHHHHHCCC--CcEEEEEEeCChhhHHHHHHHHHHHHH
Q 006566          238 TNHGSLSDRIMSYYGD------S--------PRGMVESAFEFARICRKLDF--HNFLFSMKASNPVVMVQAYRLLVAEMY  301 (640)
Q Consensus       238 vNhGSLs~ril~ryGd------t--------p~gMVeSAle~~~i~e~~~F--~diviSmKsSn~~~mV~AyRlL~~~m~  301 (640)
                      ||||||++++|++|||      +        +++||||||+|+++|+++||  +||+|||||||+++||+|||+|+++  
T Consensus       144 VN~GSL~~~ll~k~~d~~~~~~~p~~~~~v~~eamVeSAl~~~~~~~~~~f~~~~iviS~KaSdv~~~i~aYr~la~~--  221 (406)
T 4g9p_A          144 ANWGSLDPALLTELMDRNASRPEPKSAHEVVLEALVESAVRAYEAALEMGLGEDKLVLSAKVSKARDLVWVYRELARR--  221 (406)
T ss_dssp             EEGGGCCHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEECSSHHHHHHHHHHHHHH--
T ss_pred             cccccccHHHHHHhhcccccCCCccchhhhHHHHHHHHHHHHHHHHHHcCCChhheEEEeecCCHHHHHHHHHHHHHh--
Confidence            9999999999999975      2        38999999999999999888  7899999999999999999999999  


Q ss_pred             HcCCCcceEEEeecCCCCCcceeehHHHHHHHhhhcCCcEEEeecCCCCch----hhHHHHHHHh-hccc----------
Q 006566          302 VHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEK----EIDPCRRLAN-LGMR----------  366 (640)
Q Consensus       302 ~~g~dyPLHLGVTEAG~gedGrIKSAiGIG~LL~DGIGDTIRVSLTedP~~----Ei~va~~ILq-~~~R----------  366 (640)
                         +||||||||||||++++|+||||+|||+||.||||||||||||+||++    ||+||++||| +++|          
T Consensus       222 ---~dyPLHLGvTEAG~~~~G~IKSaigiG~LL~~GIGDTIRVSLT~dP~e~~~~EV~va~~ILqslglR~~~~~iiSCP  298 (406)
T 4g9p_A          222 ---TQAPLHLGLTEAGMGVKGIVASAAALAPLLLEGIGDTIRVSLTPSPKEPRTKEVEVAQEILQALGLRAFAPEVTSCP  298 (406)
T ss_dssp             ---CCSCBEECCTTCBSHHHHHHHHHHHHHHHHHTTCCSEEECCBCCCTTSCTTHHHHHHHHHHHHTTSCCCSCEEEECC
T ss_pred             ---CCCCceeeeecCCCcccceechHHHHHHHHhccCchhEEeeccCCCCcccHHHHHHHHHHHHHhCCcccCCCcccCC
Confidence               999999999999999999999999999999999999999999999985    9999999999 8888          


Q ss_pred             Ccccc-cCchh-h----HHhhc-----------ccccccccccccccccCCc--ccccccc-----------cccCCeEe
Q 006566          367 AAELQ-QGVAP-F----EEKHR-----------HYFDFQRRSGQLPIQKEGE--EVDYRGV-----------LHRDGSVL  416 (640)
Q Consensus       367 ~CGRt-~dl~~-~----~~~i~-----------~l~~~~~~vmgciVNGpGE--~AD~g~V-----------~~~~GkVv  416 (640)
                      +|||| ||+.. +    ++.++           +.++++.++|||+||||||  +||||+.           +|.+|+++
T Consensus       299 tCGRt~~d~~~~la~~v~~~l~~~~~~~~~~~~~~~~l~VAVMGCvVNGPGEa~~ADiGi~~~G~G~~~~~~lf~~G~~~  378 (406)
T 4g9p_A          299 GCGRTTSTFFQELAEEVSRRLKERLPEWRARYPGVEELKVAVMGCVVNGPGESKHAHIGISLPGAGEEPKAPVYADGKLL  378 (406)
T ss_dssp             CCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGCEEEEESSTTTHHHHHHHSSEEEECCCTTSCSEEEEEETTEEE
T ss_pred             CCCcCcchHHHHHHHHHHHHHhhhhhhhhhccCCCCCCEEEEECCcccCcchhhhcCcCcccCCCCCCCeeeEEECCEEE
Confidence            39996 77432 2    11121           1346788999999999999  5999864           57899999


Q ss_pred             eecccccccc
Q 006566          417 MSVSLDQLKA  426 (640)
Q Consensus       417 ~~v~~~~l~~  426 (640)
                      .+++.+++.+
T Consensus       379 ~~v~~~~iv~  388 (406)
T 4g9p_A          379 TILKGEGIAE  388 (406)
T ss_dssp             EEEESSCHHH
T ss_pred             EecCHHHHHH
Confidence            9999988764

PyMOL of 4g9p

>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}	Back alignment and structure

>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}	Back alignment and structure

>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*	Back alignment and structure

>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}	Back alignment and structure

>1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ...	Back alignment and structure

>1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: c.1.21.1	Back alignment and structure

>2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X*	Back alignment and structure

>4djd_C C/Fe-SP, corrinoid/iron-sulfur protein large subunit; TIM barrel, rossmann fold, B12-dependent methyltransferase; HET: B12; 2.38A {Moorella thermoacetica} PDB: 4dje_C* 4djf_C*	Back alignment and structure

>2vp8_A Dihydropteroate synthase 2; RV1207 transferase, folate biosynthesis, antibiotic resistance; 2.64A {Mycobacterium tuberculosis}	Back alignment and structure

>2h9a_A Carbon monoxide dehydrogenase corrinoid/iron- sulfur protein, gamma subunit; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} PDB: 2ycl_A*	Back alignment and structure

>2h9a_B CO dehydrogenase/acetyl-COA synthase, iron- sulfur protein; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} PDB: 2ycl_B*	Back alignment and structure

>3k13_A 5-methyltetrahydrofolate-homocysteine methyltrans; 5-methyltetrahydrofolate,methyltransferase, TIM barrel, STRU genomics, PSI-2; HET: MSE THH GOL; 2.00A {Bacteroides thetaiotaomicron}	Back alignment and structure

>1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A	Back alignment and structure

>2y5s_A DHPS, dihydropteroate synthase; transferase, folate biosynthesis; HET: 78H; 1.95A {Burkholderia cenocepacia} PDB: 2y5j_A*	Back alignment and structure

>2dqw_A Dihydropteroate synthase; dimer, structural genomics; 1.65A {Thermus thermophilus} PDB: 2dza_A* 2dzb_A*	Back alignment and structure

>1f6y_A 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; carbon dioxide fixation, cobalamin, methyltatrahydrofolate; 2.20A {Moorella thermoacetica} SCOP: c.1.21.2 PDB: 2e7f_A* 4djd_A* 4dje_A* 4djf_A* 2ogy_A*	Back alignment and structure

>4djd_D C/Fe-SP, corrinoid/iron-sulfur protein small subunit; TIM barrel, rossmann fold, B12-dependent methyltransferase; HET: B12; 2.38A {Moorella thermoacetica} PDB: 4dje_D* 4djf_D*	Back alignment and structure

>4g9p_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; oxidoreductase, isoprenoid biosynthesis, non mevalonate PATH iron-sulphur-cluster; HET: CDI MES; 1.55A {Thermus thermophilus} PDB: 2y0f_A*	Back alignment and structure

>1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix}	Back alignment and structure

>3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic groups, and carriers, transferase; HET: PT1; 1.90A {Coxiella burnetii}	Back alignment and structure

>1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase; methionine, cobalamin, vitamin B12; 1.70A {Thermotoga maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A 1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A	Back alignment and structure

>4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A*	Back alignment and structure

>4hb7_A Dihydropteroate synthase; transferase; 1.95A {Staphylococcus aureus} PDB: 1ad1_A 1ad4_A*	Back alignment and structure

>2yr1_A 3-dehydroquinate dehydratase; amino acid biosynthesis, 3-dehydroquinase, structural genomi NPPSFA; 2.00A {Geobacillus kaustophilus}	Back alignment and structure

>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A	Back alignment and structure

>1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A*	Back alignment and structure

>3o1n_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, lyase; 1.03A {Salmonella enterica subsp} PDB: 3s42_A 3l2i_A* 3lb0_A 4guf_A 4gug_A* 4guh_A* 3nnt_A* 4guj_A* 3m7w_A 3oex_A 4gfs_A* 4gui_A* 1gqn_A 1l9w_A* 1qfe_A*	Back alignment and structure

>2vef_A Dihydropteroate synthase; antibiotic resistance, transferase, folate biosynthesis; 1.8A {Streptococcus pneumoniae} PDB: 2veg_A*	Back alignment and structure

>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5	Back alignment and structure

>3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structu genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis}	Back alignment and structure

>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A	Back alignment and structure

>1k77_A EC1530, hypothetical protein YGBM; TIM barrel, structural genomics, PSI, structure initiative; 1.63A {Escherichia coli} SCOP: c.1.15.5	Back alignment and structure

>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5	Back alignment and structure

>3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503}	Back alignment and structure

>3mcm_A 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase/dihydropteroate...; folate, TIM barrel, synthase, HPPK, DHPS; 2.20A {Francisella tularensis subsp} PDB: 3mcn_A* 3mco_A*	Back alignment and structure

>3qc0_A Sugar isomerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-biology,; HET: UNL PG4; 1.45A {Sinorhizobium meliloti} PDB: 3ju2_A	Back alignment and structure

>1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6	Back alignment and structure

>3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein, transferase, claisen condensatio acid biosynthesis; 2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A* 3mi3_A*	Back alignment and structure

>2qkf_A 3-deoxy-D-manno-octulosonic acid 8- phosphate SYN; manno-octulosonate, synthase, lipopolysaccharide, KDOP, KDO8 KDO8PS; 1.75A {Neisseria meningitidis serogroup B} PDB: 3stf_A 3qpy_A 3ste_A 3qpz_A 3qq0_A 3fyo_A* 3qq1_A 3fyp_A* 3stc_A 3stg_A 1phw_A 1g7v_A* 1gg0_A 1phq_A* 1d9e_A 1pl9_A* 1q3n_A* 1x6u_A* 1x8f_A 1g7u_A*	Back alignment and structure

>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}	Back alignment and structure

>1o60_A 2-dehydro-3-deoxyphosphooctonate aldolase; structural genomics, transferase; 1.80A {Haemophilus influenzae} SCOP: c.1.10.4 PDB: 3e9a_A	Back alignment and structure

>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A	Back alignment and structure

>1xla_A D-xylose isomerase; isomerase(intramolecular oxidoreductase); 2.30A {Arthrobacter SP} SCOP: c.1.15.3 PDB: 1die_A* 1did_A 1xlb_A 1xlc_A* 1xld_A* 1xle_A 1xlf_A* 1xlg_A* 1xlh_A 1xli_A* 1xlj_A* 1xlk_A 1xll_A 1xlm_A* 4xia_A* 5xia_A*	Back alignment and structure

>3cny_A Inositol catabolism protein IOLE; xylose isomerase-like TIM barrel, structural genomics, joint for structural genomics, JCSG; 1.85A {Lactobacillus plantarum WCFS1}	Back alignment and structure

>3p3b_A Mandelate racemase/muconate lactonizing protein; enolase superfamily fold, galacturonate dehydratase, D-tartr galacturonate, lyase; HET: TAR; 1.65A {Geobacillus SP} PDB: 3ops_A* 3n4f_A* 3qpe_A*	Back alignment and structure

>2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.00A {Roseovarius nubinhibens}	Back alignment and structure

>2qw5_A Xylose isomerase-like TIM barrel; putative sugar phosphate isomerase/epimerase; 1.78A {Anabaena variabilis atcc 29413}	Back alignment and structure

>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*	Back alignment and structure

>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*	Back alignment and structure

>2qgy_A Enolase from the environmental genome shotgun sequencing of the sargasso SEA; structural genomics, unknown function, PSI-2; 1.80A {Environmental sample}	Back alignment and structure

>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus}	Back alignment and structure

>2hk0_A D-psicose 3-epimerase; TIM-barrel, isomerase; 2.00A {Agrobacterium tumefaciens} PDB: 2hk1_A*	Back alignment and structure

>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}	Back alignment and structure

>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A	Back alignment and structure

>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A*	Back alignment and structure

>2pgw_A Muconate cycloisomerase; enolase superfamily, octamer, small metabolism, PSI-II, NYSGXRC, structural genomics, PR structure initiative; 1.95A {Sinorhizobium meliloti}	Back alignment and structure

>3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 1.80A {Brucella melitensis biovar abortus} SCOP: c.1.15.0	Back alignment and structure

>3fs2_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, bruciellla melitensis, DAHP synthetase I, cytoplasm, lipopolysaccharide biosynthesis; HET: PG4; 1.85A {Brucella melitensis}	Back alignment and structure

>2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex, amino-acid BIOS lysine biosynthesis, transferase; HET: AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A* 3a9i_A*	Back alignment and structure

>3vni_A Xylose isomerase domain protein TIM barrel; D-psicose 3-epimerase, ketohexose; 1.98A {Clostridium cellulolyticum} PDB: 3vnj_A* 3vnl_A* 3vnk_A* 3vnm_A*	Back alignment and structure

>2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4	Back alignment and structure

>3obe_A Sugar phosphate isomerase/epimerase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.70A {Parabacteroides distasonis}	Back alignment and structure

>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}	Back alignment and structure

>3mqt_A Mandelate racemase/muconate lactonizing protein; PSI-II, NYSGXRC, muconate lactonizing EN structural genomics, protein structure initiative; 2.10A {Shewanella pealeana}	Back alignment and structure

>2ovl_A Putative racemase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.13A {Streptomyces coelicolor A3} PDB: 3ck5_A	Back alignment and structure

>2zvr_A Uncharacterized protein TM_0416; hyperthermophIle, ketohexose 3-epimeras tagatose 3-epimerase, isomerase; 2.20A {Thermotoga maritima}	Back alignment and structure

>3mkc_A Racemase; metabolic process, PSI2, NYSGXRC, structu genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; 1.77A {Pseudovibrio SP} PDB: 3nzg_A	Back alignment and structure

>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0	Back alignment and structure

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1	Back alignment and structure

>1rvk_A Isomerase/lactonizing enzyme; enolase superfamily, MR.GI-17937161, NYSGXRC, target T1522, structural genomics, PSI; 1.70A {Agrobacterium tumefaciens} SCOP: c.1.11.2 d.54.1.1	Back alignment and structure

>3qxb_A Putative xylose isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 1.90A {Rhodospirillum rubrum}	Back alignment and structure

>3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406}	Back alignment and structure

>1muw_A Xylose isomerase; atomic resolution, disorder; 0.86A {Streptomyces olivochromogenes} SCOP: c.1.15.3 PDB: 1s5m_A* 1s5n_A* 2gyi_A* 1xyb_A* 1xyc_A* 1xya_A* 1xyl_A 1xym_A* 1dxi_A 3gnx_A* 1gw9_A* 1xib_A 1xic_A* 1xid_A* 1xie_A* 1xif_A* 1xig_A* 1xih_A* 1xii_A* 1xij_A ...	Back alignment and structure

>3i4k_A Muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9450D, isomerase, PSI-2, protein structure initiative; 2.20A {Corynebacterium glutamicum}	Back alignment and structure

>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}	Back alignment and structure

>3ktc_A Xylose isomerase; putative sugar isomerase, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.54A {Pectobacterium atrosepticum SCRI1043}	Back alignment and structure

>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5	Back alignment and structure

>2qul_A D-tagatose 3-epimerase; beta/alpha barrel, isomerase; 1.79A {Pseudomonas cichorii} PDB: 2ou4_A 2qum_A* 2qun_A*	Back alignment and structure

>2hzg_A Mandelate racemase/muconate lactonizing enzyme/EN superfamily; structural genomics, predicted mandelate racemase, PSI; 2.02A {Rhodobacter sphaeroides}	Back alignment and structure

>3sjn_A Mandelate racemase/muconate lactonizing protein; enolase, magnesium binding site, lyase; 1.90A {Shewanella pealeana}	Back alignment and structure

>1mdl_A Mandelate racemase; isomerase, mandelate pathway, magnesium; HET: RMN SMN; 1.85A {Pseudomonas aeruginosa} SCOP: c.1.11.2 d.54.1.1 PDB: 1mdr_A* 3uxk_A* 3uxl_A* 1dtn_A* 1mra_A* 2mnr_A 1mns_A	Back alignment and structure

>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A	Back alignment and structure

>4e4u_A Mandalate racemase/muconate lactonizing enzyme; mandelate racemase, aldolase, structural genomics, biology; 1.35A {Unidentified}	Back alignment and structure

>2poz_A Putative dehydratase; octamer, structural genomics, P protein structure initiative, NEW YORK SGX research center structural genomics, nysgxrc; 2.04A {Mesorhizobium loti}	Back alignment and structure

>3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str}	Back alignment and structure

>2gl5_A Putative dehydratase protein; structural genomics, protein structure initiati nysgxrc; 1.60A {Salmonella typhimurium} SCOP: c.1.11.2 d.54.1.1 PDB: 4e6m_A*	Back alignment and structure

>1kcz_A Beta-methylaspartase; beta zigzag, alpha/beta-barrel, lyase; 1.90A {Clostridium tetanomorphum} SCOP: c.1.11.2 d.54.1.1 PDB: 1kd0_A* 3zvi_A 3zvh_A	Back alignment and structure

>1chr_A Chloromuconate cycloisomerase; 3.00A {Ralstonia eutropha} PDB: 2chr_A	Back alignment and structure

>1kko_A 3-methylaspartate ammonia-lyase; enolase superfamily, TIM barrel; 1.33A {Citrobacter amalonaticus} SCOP: c.1.11.2 d.54.1.1 PDB: 1kkr_A*	Back alignment and structure

>3tml_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.90A {Burkholderia cenocepacia} PDB: 3t4c_A	Back alignment and structure

>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*	Back alignment and structure

>2zad_A Muconate cycloisomerase; muconate lactonizing enzyme (MLE), TM0006, struct genomics, NPPSFA; HET: 1PE; 1.60A {Thermotoga maritima} PDB: 3deq_A 3der_A* 3des_A* 3dfy_A	Back alignment and structure

>2nql_A AGR_PAT_674P, isomerase/lactonizing enzyme; enolase, structural genomics, protein structure initiative, nysgxrc; 1.80A {Agrobacterium tumefaciens str} PDB: 4dn1_A	Back alignment and structure

>2ps2_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9440A, enolase superfamily, PSI-2; 1.80A {Aspergillus oryzae RIB40}	Back alignment and structure

>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A	Back alignment and structure

>3go2_A Putative L-alanine-DL-glutamate epimerase; structural genomics, isomerase, PSI-2; 1.70A {Burkholderia xenovorans} PDB: 2oo6_A 3sn0_A 3sn1_A* 3sn4_A*	Back alignment and structure

>2bmb_A Folic acid synthesis protein FOL1; folate biosynthesis, transferase, ligase, multifunctional enzyme; HET: PMM; 2.3A {Saccharomyces cerevisiae}	Back alignment and structure

>4e5t_A Mandelate racemase / muconate lactonizing enzyme, terminal domain protein; aldolase, structural genomics, biology; 2.90A {Labrenzia alexandrii}	Back alignment and structure

>4dwd_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, EFI, enzyme function initiative, metal protein; HET: MSE; 1.50A {Paracoccus denitrificans} PDB: 3n4e_A*	Back alignment and structure

>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1	Back alignment and structure

>3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A	Back alignment and structure

>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}	Back alignment and structure

>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0	Back alignment and structure

>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp}	Back alignment and structure

>3gd6_A Muconate cycloisomerase; structural genomics, NYSGXRC, target 9375A, divergent enolase, lyase, PSI-2; 1.60A {Oceanobacillus iheyensis HTE831} PDB: 2oqy_A 3es8_A 3es7_A 3fyy_A 3hpf_A*	Back alignment and structure

>3ozy_A Putative mandelate racemase; beta-alpha barrel, enolase superfamily member, M-xylarate, U function; HET: DXL; 1.30A {Bordetella bronchiseptica} PDB: 3ozm_A* 3h12_A 3op2_A*	Back alignment and structure

>3l23_A Sugar phosphate isomerase/epimerase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.70A {Parabacteroides distasonis}	Back alignment and structure

>3q45_A Mandelate racemase/muconate lactonizing enzyme FA possible chloromuconate cycloisomerase...; (beta/alpha)8-barrel; 3.00A {Cytophaga hutchinsonii} PDB: 3q4d_A	Back alignment and structure

>3v3w_A Starvation sensing protein RSPA; enolase, enzyme function initiative, EFI, lyase; HET: NHE; 1.40A {Cellvibrio japonicus} PDB: 3v4b_A* 4f4r_A 3qkf_A* 3qke_A* 3p93_A* 3ow1_A 3pk7_A* 3rgt_A* 3bsm_A	Back alignment and structure

>3bjs_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI-2, protein struc initiative; 2.70A {Polaromonas SP}	Back alignment and structure

>2og9_A Mandelate racemase/muconate lactonizing enzyme; NYSGXRC, protein structure initiative (PSI) II, PSI-2, 9382A mandelate racemase; 1.90A {Polaromonas SP} PDB: 3cb3_A*	Back alignment and structure

>1nu5_A Chloromuconate cycloisomerase; enzyme, dehalogenation; 1.95A {Pseudomonas SP} SCOP: c.1.11.2 d.54.1.1	Back alignment and structure

>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}	Back alignment and structure

>2o56_A Putative mandelate racemase; dehydratase, structural genomics, protein structure initiati 2; 2.00A {Salmonella typhimurium}	Back alignment and structure

>2qde_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-II, NYSGXRC, enolase, structural genomics, protei structure initiative, PSI-2; 1.93A {Azoarcus SP}	Back alignment and structure

>2gdq_A YITF; mandelate racemase/muconate lactonizing enzyme, TIM-barrel, octamer, structural genomics, PSI; 1.80A {Bacillus subtilis subsp} SCOP: c.1.11.2 d.54.1.1 PDB: 2gge_A	Back alignment and structure

>1sjd_A N-acylamino acid racemase; lyase, isomerase; HET: NPG; 1.87A {Amycolatopsis SP} SCOP: c.1.11.2 d.54.1.1 PDB: 1sja_A* 1sjb_A* 1sjc_A*	Back alignment and structure

>1bxb_A Xylose isomerase; xylose metabolism; 2.20A {Thermus thermophilus} SCOP: c.1.15.3 PDB: 1bxc_A	Back alignment and structure

>1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} SCOP: c.1.28.1	Back alignment and structure

>3rcy_A Mandelate racemase/muconate lactonizing enzyme-LI protein; structural genomics, protein structure initiative; HET: RIB; 1.99A {Roseovarius SP} PDB: 3t4w_A	Back alignment and structure

>3ayv_A Putative uncharacterized protein TTHB071; structural genomics, riken structural genomics/proteomics in RSGI, TIM barrel, unknown function; 1.85A {Thermus thermophilus} PDB: 3ayt_A	Back alignment and structure

>3rr1_A GALD, putative D-galactonate dehydratase; enolase, magnesium binding site, lyase; 1.95A {Ralstonia pickettii} PDB: 3rra_A	Back alignment and structure

>2p8b_A Mandelate racemase/muconate lactonizing enzyme family protein; enolase superfamily, prediction of function; HET: NSK; 1.70A {Bacillus cereus atcc 14579} PDB: 2p88_A* 2p8c_A*	Back alignment and structure

>3o1n_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, lyase; 1.03A {Salmonella enterica subsp} PDB: 3s42_A 3l2i_A* 3lb0_A 4guf_A 4gug_A* 4guh_A* 3nnt_A* 4guj_A* 3m7w_A 3oex_A 4gfs_A* 4gui_A* 1gqn_A 1l9w_A* 1qfe_A*	Back alignment and structure

>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}	Back alignment and structure

>3e02_A Uncharacterized protein DUF849; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.90A {Burkholderia xenovorans LB400}	Back alignment and structure

>3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM barrel, catalytic domain, dimer, leucine biosynthesis, ketoisovalerate; 1.95A {Neisseria meningitidis}	Back alignment and structure

>3r4e_A Mandelate racemase/muconate lactonizing enzyme; enolase fold, mannonate dehydratase, D-mannonate, lyase; HET: CS2; 1.65A {Novosphingobium aromaticivorans} PDB: 2qjj_A 2qjn_A* 2qjm_A*	Back alignment and structure

>2pp0_A L-talarate/galactarate dehydratase; enolase superfamily, LYA; 2.20A {Salmonella typhimurium} PDB: 2pp1_A* 2pp3_A*	Back alignment and structure

>3stp_A Galactonate dehydratase, putative; PSI biology, structural genomics, NEW YORK structural genomi research consortium; 1.88A {Labrenzia aggregata iam 12614} PDB: 3sqs_A 3ssz_A	Back alignment and structure

>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...	Back alignment and structure

>1tkk_A Similar to chloromuconate cycloisomerase; epimerase, enolase super family,; 2.10A {Bacillus subtilis} SCOP: c.1.11.2 d.54.1.1 PDB: 1jpm_A	Back alignment and structure

>4dxk_A Mandelate racemase / muconate lactonizing enzyme protein; enolase, mandelate racemase subgroup, enzyme function initia EFI; 1.25A {Agrobacterium tumefaciens} PDB: 4dx3_A 2pod_A	Back alignment and structure

>3vcn_A Mannonate dehydratase; enolase, magnesium binding site, enzyme function initiative, lyase; 1.45A {Caulobacter crescentus} PDB: 4gme_A* 4fi4_A 3thu_A	Back alignment and structure

>2ox4_A Putative mandelate racemase; enolase, dehydratase, structural genomics, protein structure initiative, PSI, nysgrc; 1.80A {Zymomonas mobilis}	Back alignment and structure

>2x7v_A Probable endonuclease 4; DNA repair protein, metal-binding, hydrolase, DNA damage, DN; 2.30A {Thermotoga maritima MSB8} PDB: 2x7w_A*	Back alignment and structure

>3lot_A Uncharacterized protein; protein of unknown function, structural genomics, joint CENT structural genomics, JCSG; HET: MSE; 1.89A {Archaeoglobus fulgidus}	Back alignment and structure

>2zds_A Putative DNA-binding protein; TIM-barrel fold, structural genomics, NPPSFA; 2.30A {Streptomyces coelicolor}	Back alignment and structure

>1tzz_A Hypothetical protein L1841; structural genomics, mandelate racemase like fold, nysgxrc target T1523, PSI, protein structure initiative; 1.86A {Bradyrhizobium japonicum} SCOP: c.1.11.2 d.54.1.1 PDB: 2dw7_A* 2dw6_A*	Back alignment and structure

>2g0w_A LMO2234 protein; putative sugar isomerase, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE PG4; 1.70A {Listeria monocytogenes} SCOP: c.1.15.4	Back alignment and structure

>2fym_A Enolase; RNA degradosome, enolase, lyase; 1.60A {Escherichia coli} SCOP: c.1.11.1 d.54.1.1 PDB: 1e9i_A 3h8a_A	Back alignment and structure

>3eez_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, unknown function, PSI-2, protein structure initiative; 2.80A {Silicibacter pomeroyi}	Back alignment and structure

>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1	Back alignment and structure

>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*	Back alignment and structure

>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*	Back alignment and structure

>3dip_A Enolase; structural genomics, isomerase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, NYSGXRC, lyase; HET: SIC; 2.50A {Unidentified}	Back alignment and structure

>3e49_A Uncharacterized protein DUF849 with A TIM barrel; structural genomics, joint center for structural genomics; HET: MSE; 1.75A {Burkholderia xenovorans LB400}	Back alignment and structure

>1sfl_A 3-dehydroquinate dehydratase; 3-dehydroquinase, enzyme turnover, shikimate pathway, lyase; 1.90A {Staphylococcus aureus subsp} SCOP: c.1.10.1 PDB: 1sfj_A*	Back alignment and structure

>2qq6_A Mandelate racemase/muconate lactonizing enzyme- like protein; enolase, Mg ION, PSI-2, NYSGXRC, structural genomics; 2.90A {Rubrobacter xylanophilus dsm 9941}	Back alignment and structure

>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A	Back alignment and structure

>3vav_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics, seattle structural genomics center for infectious disease; 1.80A {Burkholderia thailandensis} SCOP: c.1.12.8 PDB: 3ez4_A	Back alignment and structure

>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4	Back alignment and structure

>3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A*	Back alignment and structure

>4g38_A SIR-HP, sirhp, sulfite reductase [NADPH] hemoprotein beta-compon; snirr, oxidoreductase, sulfite reductase flavoprotein; HET: SRM; 1.56A {Escherichia coli} PDB: 4g39_A* 1aop_A* 2aop_A* 2gep_A* 3aop_A* 3geo_A* 4aop_A* 4gep_A* 5aop_A* 5gep_A* 6gep_A* 7gep_A* 8gep_A*	Back alignment and structure

>3mwc_A Mandelate racemase/muconate lactonizing protein; enolase, structural genomics, protein structure initiative, nysgrc; 1.80A {Kosmotoga olearia}	Back alignment and structure

>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1	Back alignment and structure

>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1	Back alignment and structure

>1v77_A PH1877P, hypothetical protein PH1877; RNAse P protein, TIM-barrel, RNA binding protein; 1.80A {Pyrococcus horikoshii} SCOP: c.6.3.2 PDB: 2czv_A*	Back alignment and structure

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}	Back alignment and structure

>3ddm_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9284B, enolase family, PSI-2; 2.60A {Bordetella bronchiseptica}	Back alignment and structure

>3jva_A Dipeptide epimerase; enolase superfamily, isomerase; 1.70A {Enterococcus faecalis V583} PDB: 3jw7_A* 3jzu_A* 3k1g_A* 3kum_A*	Back alignment and structure

>2qdd_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.30A {Roseovarius nubinhibens} PDB: 3fvd_B	Back alignment and structure

>2hxt_A L-fuconate dehydratase; enolase superfamily, D-erythromohydr unknown function; HET: EHM; 1.70A {Xanthomonas campestris PV} PDB: 1yey_A 2hxu_A* 2hne_A	Back alignment and structure

>1sfl_A 3-dehydroquinate dehydratase; 3-dehydroquinase, enzyme turnover, shikimate pathway, lyase; 1.90A {Staphylococcus aureus subsp} SCOP: c.1.10.1 PDB: 1sfj_A*	Back alignment and structure

>1xim_A D-xylose isomerase; isomerase(intramolecular oxidoreductse); HET: XYL; 2.20A {Actinoplanes missouriensis} SCOP: c.1.15.3 PDB: 4xim_A 5xim_A* 6xim_A* 7xim_A 8xim_A* 9xim_A* 3xin_A 2xim_A* 5xin_A* 1xin_A* 1bhw_A* 2xin_A* 3xim_A*	Back alignment and structure

>2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.00A {Roseovarius nubinhibens}	Back alignment and structure

>3u0h_A Xylose isomerase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM barrel; 2.30A {Alicyclobacillus acidocaldarius subsp}	Back alignment and structure

>2yr1_A 3-dehydroquinate dehydratase; amino acid biosynthesis, 3-dehydroquinase, structural genomi NPPSFA; 2.00A {Geobacillus kaustophilus}	Back alignment and structure

>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}	Back alignment and structure

>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}	Back alignment and structure

>1r0m_A N-acylamino acid racemase; isomerase; 1.30A {Deinococcus radiodurans} SCOP: c.1.11.2 d.54.1.1 PDB: 1xpy_A* 1xs2_A 2ggj_A 2ggi_A 2ggh_A* 2ggg_A* 2fkp_A	Back alignment and structure

>3ro6_B Putative chloromuconate cycloisomerase; TIM barrel; 2.20A {Methylococcus capsulatus} PDB: 3rit_A	Back alignment and structure

>2oz8_A MLL7089 protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.48A {Mesorhizobium loti}	Back alignment and structure

>3jva_A Dipeptide epimerase; enolase superfamily, isomerase; 1.70A {Enterococcus faecalis V583} PDB: 3jw7_A* 3jzu_A* 3k1g_A* 3kum_A*	Back alignment and structure

>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae}	Back alignment and structure

>4dye_A Isomerase; enolase family protein, EFI, enzym function initiative; 1.60A {Streptomyces coelicolor} PDB: 2oqh_A	Back alignment and structure

>3my9_A Muconate cycloisomerase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics, nysgx; 2.20A {Azorhizobium caulinodans}	Back alignment and structure

>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}	Back alignment and structure

>3fcp_A L-Ala-D/L-Glu epimerase, A muconate lactonizing enzyme; structural genomics, nysgrc,target 9450E, PSI-2; 1.80A {Klebsiella pneumoniae subsp}	Back alignment and structure

>3tji_A Mandelate racemase/muconate lactonizing enzyme, N domain protein; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.80A {Enterobacter SP}	Back alignment and structure

>3r0u_A Enzyme of enolase superfamily; structural genomics, putative epimerase, PSI-biolog YORK structural genomics research consortium; HET: MSE TAR; 1.90A {Francisella philomiragia subsp} PDB: 3px5_A* 3r0k_A* 3r10_A 3r11_A 3r1z_A*	Back alignment and structure

>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A	Back alignment and structure

>3s5s_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-biology, structural genomics, NEW YORK structural genomi research consortium; 2.40A {Sorangium cellulosum}	Back alignment and structure

>1jpd_X L-Ala-D/L-Glu epimerase; enolase superfamily, muconate lactonizing enzyme subgroup, alpha/beta barrel, structural genomics, isomerase; 2.60A {Escherichia coli} SCOP: c.1.11.2 d.54.1.1	Back alignment and structure

>2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A*	Back alignment and structure

>1qtw_A Endonuclease IV; DNA repair enzyme, TIM barrel, trinuclear Zn cluster, hydrolase; 1.02A {Escherichia coli} SCOP: c.1.15.1 PDB: 1qum_A* 2nqh_A 2nqj_A* 2nq9_A*	Back alignment and structure

>3dgb_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding, isomeras structural genomics, PSI-2; HET: MUC; 1.70A {Pseudomonas fluorescens} PDB: 3ct2_A* 3fj4_A* 1muc_A 1bkh_A 3muc_A 2muc_A 1f9c_A	Back alignment and structure

>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0	Back alignment and structure

>3u9i_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, PSI-biology; 2.90A {Roseiflexus SP}	Back alignment and structure

>2ocz_A 3-dehydroquinate dehydratase; structural genomics, DH streptococcus pyogenes, dehydroshikimate, PSI-2, protein ST initiative; HET: MSE; 1.85A {Streptococcus pyogenes serotype M1}	Back alignment and structure

>3eez_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, unknown function, PSI-2, protein structure initiative; 2.80A {Silicibacter pomeroyi}	Back alignment and structure

>3i6e_A Muconate cycloisomerase I; structural genomics, NYSGXRC, targer 9468A, muconate lactonizing enzyme, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi} PDB: 3i6t_A	Back alignment and structure

>3tj4_A Mandelate racemase; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.50A {Agrobacterium tumefaciens} PDB: 4h19_A*	Back alignment and structure

>3v5c_A Mandelate racemase/muconate lactonizing protein; enolase fold, galacturonate dehydratase, double Mg site, LYA; 1.53A {Paenibacillus SP} PDB: 3v5f_A* 3p3b_A* 3ops_A* 3n4f_A* 3qpe_A*	Back alignment and structure

>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic DEGR aromatic hydrocarbons catabolism; 1.60A {Escherichia coli} PDB: 2v5k_A	Back alignment and structure

>3tqp_A Enolase; energy metabolism, lyase; 2.20A {Coxiella burnetii}	Back alignment and structure

>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}	Back alignment and structure

>4e4f_A Mannonate dehydratase; magnesium binding, enzyme function initiative, isomerase; 2.00A {Pectobacterium carotovorum subsp}	Back alignment and structure

>1rvk_A Isomerase/lactonizing enzyme; enolase superfamily, MR.GI-17937161, NYSGXRC, target T1522, structural genomics, PSI; 1.70A {Agrobacterium tumefaciens} SCOP: c.1.11.2 d.54.1.1	Back alignment and structure

>3dg3_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding; 1.60A {Mycobacterium smegmatis} PDB: 3dg6_A* 3dg7_A*	Back alignment and structure

>2oz8_A MLL7089 protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.48A {Mesorhizobium loti}	Back alignment and structure

>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*	Back alignment and structure

>3rcy_A Mandelate racemase/muconate lactonizing enzyme-LI protein; structural genomics, protein structure initiative; HET: RIB; 1.99A {Roseovarius SP} PDB: 3t4w_A	Back alignment and structure

>4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		640
d1gqna_		252	Type I 3-dehydroquinate dehydratase {Salmonella ty	97.0
d1f6ya_		262	Methyltetrahydrofolate: corrinoid/iron-sulfur prot	96.77
d3bofa1		260	Cobalamin-dependent methionine synthase MetH, C-te	96.45
d1i60a_		278	Hypothetical protein IolI {Bacillus subtilis [TaxI	96.36
d1vr6a1		338	3-deoxy-D-arabino-heptulosonate-7-phosphate syntha	96.25
d1tx2a_		273	Dihydropteroate synthetase {Bacillus anthracis [Ta	96.0
d1kkoa1		251	beta-Methylaspartase {Citrobacter amalonaticus [Ta	94.92
d1ajza_		282	Dihydropteroate synthetase {Escherichia coli [TaxI	94.81
d1kcza1		253	beta-Methylaspartase {Clostridium tetanomorphum [T	94.53
d2g0wa1		275	Hypothetical protein Lmo2234 {Listeria monocytogen	92.96
d1eyea_		270	Dihydropteroate synthetase {Mycobacterium tubercul	92.52
d2chra1		244	Chlormuconate cycloisomerase {Alcaligenes eutrophu	92.34
d1jpdx1		208	L-Ala-D/L-Glu epimerase {Escherichia coli [TaxId:	91.85
d1z41a1		337	NADPH dehydrogenase NamA {Bacillus subtilis [TaxId	91.81
d1gqna_		252	Type I 3-dehydroquinate dehydratase {Salmonella ty	91.56
d1vlia2		295	Spore coat polysaccharide biosynthesis protein Sps	91.44
d1sjda1		242	N-acylamino acid racemase {Amycolatopsis sp. [TaxI	89.98
d1nu5a1		243	Chlormuconate cycloisomerase {Pseudomonas sp. p51	89.56
d2q02a1		271	Putative cytoplasmic protein STM4435 {Salmonella t	89.3
d1ad1a_		264	Dihydropteroate synthetase {Staphylococcus aureus	88.9
d1yx1a1		250	Hypothetical protein PA2260 {Pseudomonas aeruginos	87.81
d1muca1		242	Muconate-lactonizing enzyme {Pseudomonas putida [T	86.94
d1r0ma1		243	N-acylamino acid racemase {Deinococcus radiodurans	86.27
d2zdra2		280	Capsule biosynthesis protein SiaC, N-terminal doma	86.18
d1wufa1		244	N-acylamino acid racemase {Listeria innocua [TaxId	85.88
d1jpma1		234	L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId:	82.84
d2dria_		271	D-ribose-binding protein {Escherichia coli, strain	82.27
d2flia1		217	D-ribulose-5-phosphate 3-epimerase {Streptococcus	82.16
d1vfsa2		237	Alanine racemase {Streptomyces lavendulae [TaxId:	80.98

>d1gqna_ c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase {Salmonella typhi [TaxId: 90370]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Type I 3-dehydroquinate dehydratase
species: Salmonella typhi [TaxId: 90370]

Probab=97.00  E-value=0.011  Score=56.81  Aligned_cols=208  Identities=18%  Similarity=0.223  Sum_probs=128.3

Q ss_pred             eeEEEceeecCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCC---HHHHHHHHHHHHHhhcCCCCccee
Q 006566           89 RTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQG---KREADACFEIKNSLVQKNYNIPLV  165 (640)
Q Consensus        89 r~V~VG~v~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~rl~~aGceiVRvtvp~---~~~A~~l~~I~~~L~~~g~~iPLV  165 (640)
                      ++|+|+++.||.+.|-.+=|-+-   .+.+..++|+.+..+.|||+|=+-+.-   ..+.+.+.++.+.|++.-.++|++
T Consensus         2 ~~~~v~~~~~g~g~pkIcv~l~~---~~~~~~~~~~~~~~~~~aD~vE~RlD~l~~~~~~~~l~~~~~~lr~~~~~~PiI   78 (252)
T d1gqna_           2 KTVTVKNLIIGEGMPKIIVSLMG---RDINSVKAEALAYREATFDILEWRVDHFMDIASTQSVLTAARVIRDAMPDIPLL   78 (252)
T ss_dssp             CCEEETTEEETSSSCEEEEEECC---SSHHHHHHHHHHHTTSCCSEEEEEGGGCSCTTCHHHHHHHHHHHHHHCTTSCEE
T ss_pred             CeEEECCEEecCCCCEEEEEeCC---CCHHHHHHHHHHHhhcCCCEEEEEEccccccCCHHHHHHHHHHHHHhcCCCCEE
Confidence            57999999999999999877764   566777999999999999999777633   334566666666666665679999


Q ss_pred             ecc-------CCC--HHHHHHHhhhcCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEE
Q 006566          166 ADI-------HFA--PSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRI  236 (640)
Q Consensus       166 ADI-------HF~--~~~Al~Aa~~v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRI  236 (640)
                      +=+       +|.  ...=.+..+.+  ++.+.-+|.|=       |         +..-++.+..+++.+++.|+.+ |
T Consensus        79 ~T~R~~~eGG~~~~~~~~~~~ll~~~--~~~~~~d~iDi-------E---------l~~~~~~~~~li~~a~~~~~~v-I  139 (252)
T d1gqna_          79 FTFRSAKEGGEQTITTQHYLTLNRAA--IDSGLVDMIDL-------E---------LFTGDADVKATVDYAHAHNVYV-V  139 (252)
T ss_dssp             EECCBGGGTCSBCCCHHHHHHHHHHH--HHHSCCSEEEE-------E---------GGGCHHHHHHHHHHHHHTTCEE-E
T ss_pred             EEEechhhCCCCCCCHHHHHHHHHHH--HHcCCCceEec-------c---------ccccHHHHHHHHHHhhcCCCeE-E
Confidence            732       222  11111111110  11111234442       1         2223445788999999998876 6


Q ss_pred             eeCCCCCcHhHHHHhCCCh--HHHHHHHHHHHHHHHHCCCCcEEEEEEeCChhhHHHHHHHHHHHHHHcCCCcce-EEEe
Q 006566          237 GTNHGSLSDRIMSYYGDSP--RGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPL-HLGV  313 (640)
Q Consensus       237 GvNhGSLs~ril~ryGdtp--~gMVeSAle~~~i~e~~~F~diviSmKsSn~~~mV~AyRlL~~~m~~~g~dyPL-HLGV  313 (640)
                      +-+|-         |..||  +.|.    +.++-+++.|-+=++|-..+.+......-.+. ..++.+.+.++|+ -++.
T Consensus       140 ~S~Hd---------f~~TP~~~~l~----~~~~~m~~~gaDivKia~~a~~~~D~~~ll~~-~~~~~~~~~~~P~I~~~M  205 (252)
T d1gqna_         140 MSNHD---------FHQTPSAEEMV----SRLRKMQALGADIPKIAVMPQSKHDVLTLLTA-TLEMQQHYADRPVITMSM  205 (252)
T ss_dssp             EEEEE---------SSCCCCHHHHH----HHHHHHHHTTCSEEEEEECCSSHHHHHHHHHH-HHHHHHHTCSSCCEEEEC
T ss_pred             EEecC---------CCCCCCHHHHH----HHHHHHHHhCCCeEEEEecCCCHHHHHHHHHH-HHHHHHhCCCCCEEEEec
Confidence            66662         33455  3333    44566678898999999999887764433332 2333445678997 4554


Q ss_pred             ecCCCCCcceeehHHH--HHHHhhhc
Q 006566          314 TEAGEGEDGRMKSAIG--IGTLLQDG  337 (640)
Q Consensus       314 TEAG~gedGrIKSAiG--IG~LL~DG  337 (640)
                           |+.|++--..+  +|+-+.-|
T Consensus       206 -----G~~G~~SRi~~~~~GS~~tya  226 (252)
T d1gqna_         206 -----AKEGVISRLAGEVFGSAATFG  226 (252)
T ss_dssp             -----TTTTHHHHHCHHHHTCCEEEC
T ss_pred             -----CCcchhHHHHHHHhCCceEec
Confidence                 44455443333  45555444

PyMOL of d1gqna_

>d1f6ya_ c.1.21.2 (A:) Methyltetrahydrofolate: corrinoid/iron-sulfur protein methyltransferase MetR {Moorella thermoacetica [TaxId: 1525]}	Back information, alignment and structure

>d3bofa1 c.1.21.2 (A:301-560) Cobalamin-dependent methionine synthase MetH, C-terminal domain {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1i60a_ c.1.15.4 (A:) Hypothetical protein IolI {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1vr6a1 c.1.10.4 (A:1-338) 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1tx2a_ c.1.21.1 (A:) Dihydropteroate synthetase {Bacillus anthracis [TaxId: 1392]}	Back information, alignment and structure

>d1kkoa1 c.1.11.2 (A:161-411) beta-Methylaspartase {Citrobacter amalonaticus [TaxId: 35703]}	Back information, alignment and structure

>d1ajza_ c.1.21.1 (A:) Dihydropteroate synthetase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1kcza1 c.1.11.2 (A:161-413) beta-Methylaspartase {Clostridium tetanomorphum [TaxId: 1553]}	Back information, alignment and structure

>d2g0wa1 c.1.15.4 (A:10-284) Hypothetical protein Lmo2234 {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1eyea_ c.1.21.1 (A:) Dihydropteroate synthetase {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d2chra1 c.1.11.2 (A:127-370) Chlormuconate cycloisomerase {Alcaligenes eutrophus [TaxId: 106590]}	Back information, alignment and structure

>d1jpdx1 c.1.11.2 (X:114-321) L-Ala-D/L-Glu epimerase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1gqna_ c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase {Salmonella typhi [TaxId: 90370]}	Back information, alignment and structure

>d1vlia2 c.1.10.6 (A:2-296) Spore coat polysaccharide biosynthesis protein SpsE, N-terminal domain {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1sjda1 c.1.11.2 (A:126-367) N-acylamino acid racemase {Amycolatopsis sp. [TaxId: 37632]}	Back information, alignment and structure

>d1nu5a1 c.1.11.2 (A:127-369) Chlormuconate cycloisomerase {Pseudomonas sp. p51 [TaxId: 65067]}	Back information, alignment and structure

>d2q02a1 c.1.15.4 (A:1-271) Putative cytoplasmic protein STM4435 {Salmonella typhimurium [TaxId: 90371]}	Back information, alignment and structure

>d1ad1a_ c.1.21.1 (A:) Dihydropteroate synthetase {Staphylococcus aureus [TaxId: 1280]}	Back information, alignment and structure

>d1yx1a1 c.1.15.7 (A:3-252) Hypothetical protein PA2260 {Pseudomonas aeruginosa [TaxId: 287]}	Back information, alignment and structure

>d1muca1 c.1.11.2 (A:131-372) Muconate-lactonizing enzyme {Pseudomonas putida [TaxId: 303]}	Back information, alignment and structure

>d1r0ma1 c.1.11.2 (A:133-375) N-acylamino acid racemase {Deinococcus radiodurans [TaxId: 1299]}	Back information, alignment and structure

>d2zdra2 c.1.10.6 (A:2-281) Capsule biosynthesis protein SiaC, N-terminal domain {Neisseria meningitidis [TaxId: 487]}	Back information, alignment and structure

>d1wufa1 c.1.11.2 (A:1127-1370) N-acylamino acid racemase {Listeria innocua [TaxId: 1642]}	Back information, alignment and structure

>d1jpma1 c.1.11.2 (A:126-359) L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d2dria_ c.93.1.1 (A:) D-ribose-binding protein {Escherichia coli, strain k-12 [TaxId: 562]}	Back information, alignment and structure

>d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase {Streptococcus pyogenes [TaxId: 1314]}	Back information, alignment and structure

>d1vfsa2 c.1.6.1 (A:13-249) Alanine racemase {Streptomyces lavendulae [TaxId: 1914]}	Back information, alignment and structure