Citrus Sinensis ID: 006613

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------64

MGAIKLELRCPQKVDGIAIDPEPDWSFDALLSELNSLETRLNASSKPVPFTKTKSREISTGKSVESNARAFVIRVSDDELENDNERKGEEVHNGSLVAVKRFTCDALYLSESDDSDDDVALGGESYLMDEVGLADGALVELTHQHQLGVKEEIRNLISTLETQLISENEQSNSALAQVEKDRDMRREMDRKNDTVYQRKIAEALDNHLTAVQRDHELKSQIEERKIRSDAAYEEAKRKERALQEEKIRQEKVKAEAEMQAKLRAEEAKRAALEAEKRAAKEAAEREAAENSKRITAGVSQDGACGRQPDDSSVIAGAQSRGSRSDGTKKLQSAVRATESALNIEQKRLQKLKELDEENQSLKLSSNEDFSGYEKDISRLIRQIRGLKDNVRTKASELVKILNNPLCPQSISLATFSKKVVSRCETPDDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYREEDGKIESLENYLSRLKSYMRLYAALIQTEIPGVQNAHGLKEGWAWLARFLNALPANIYTAVALNAFLQLAGFALFKKYKSQFRKILDNIYDNFLNALKAREDSKLNLVIAEIQYYIEDKKFLEEPEGRTLQAPPLSSTLVPEADYQEYG

ccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccHHHHccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHHHcccccccccccccccHHHHHccccccHHHHHHHHcHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccHHHHHHHHHcccccccccccccccccccccHHHHHHHHcEEccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccc

ccEEEEEcccccccccEEEcccccccHHHHHHHHHHHHHHHcccccccccccccccccccccEEcccccEEEEEEccccccccccccccccccEEEEccccccccccEcccccccccHcccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHcHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccEEEEccccccccccccHHHHHHHcccEccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccccccccccccHHHcccccccccc

mgaiklelrcpqkvdgiaidpepdwSFDALLSELNSLETrlnasskpvpftktksreistgksvesNARAFVIRVsddelendnerkgeevhngsLVAVKRFTCDalylsesddsdddvalggesylmdevglADGALVELTHQHQLGVKEEIRNLISTLETQLISENEQSNSALAQVEKDRDMRREMDRKNDTVYQRKIAEALDNHLTAVQRDHELKSQIEERKIRSDAAYEEAKRKERALQEEKIRQEKVKAEAEMQAKLRAEEAKRAALEAEKRAAKEAAEREAAENSkritagvsqdgacgrqpddssviagaqsrgsrsdgTKKLQSAVRATESALNIEQKRLQKLKELDEEnqslklssnedfsgyEKDISRLIRQIRGLKDNVRTKASELVKIlnnplcpqsislaTFSKKVVsrcetpddnvamSCGYVIVLVASQVPQVMDILLGEFHRAciytvpkhivfseaaFESEEAYYKTIGyreedgkiESLENYLSRLKSYMRLYAALIQTeipgvqnahgLKEGWAWLARFLNALPANIYTAVALNAFLQLAGFALFKKYKSQFRKILDNIYDNFLNALKAREDSKLNLVIAEIQYYIEDkkfleepegrtlqapplsstlvpeadyqeyg

MGAIKLELRCPQKVDGIAIDPEPDWSFDALLSELNSLEtrlnasskpvpftktksreistgksvesnarafvirvsddelendnerkgeevhngslvavKRFTCDALYLSESDDSDDDVALGGESYLMDEVGLADGALVELTHQHQLGVKEEIRNLISTLETqliseneqsnsalaqvekdrdmrremdrKNDTVYQRKIAEaldnhltavqrdhelksqieerkirsdaayeEAKRKERALQEEKIRQEKVKAEAEMQAKLRAEEAKRAALEAEKRAAKEAAereaaenskritagvsqdgacgrqPDDSSVIagaqsrgsrsdgtkKLQSAVRATESALNIEQKRLQKLKEldeenqslklssnedfsgyeKDISRLIRQIRGLKDNVRTKASELVKilnnplcpqsiSLATFSKKVVSRCETPDDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIgyreedgkieSLENYLSRLKSYMRLYAALIQTEIPGVQNAHGLKEGWAWLARFLNALPANIYTAVALNAFLQLAGFALFKKYKSQFRKILDNIYDNFLNALKAREDSKLNLVIAEIQYYIEDKKfleepegrtlqapplsstlvpeadyqeyg

MGAIKLELRCPQKVDGIAIDPEPDWSFDALLSELNSLETRLNASSKPVPFTKTKSREISTGKSVESNARAFVIRVSDDELENDNERKGEEVHNGSLVAVKRFTCDALYLSEsddsdddVALGGESYLMDEVGLADGALVELTHQHQLGVKEEIRNLISTLETQLISENEQSNSALAQVekdrdmrremdrkndTVYQRKIAEALDNHLTAVQRDHELKSQIEERKIRSDaayeeakrkeraLQEEKIRQEKVKAEAEMQaklraeeakraaleaekraakeaaereaaeNSKRITAGVSQDGACGRQPDDSSVIAGAQSRGSRSDGTKKLQSAVRATESALNIEQKRLQKLKELDEENQSLKLSSNEDFSGYEKDISRLIRQIRGLKDNVRTKASELVKILNNPLCPQSISLATFSKKVVSRCETPDDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPKHIVfseaafeseeaYYKTIGYREEDGKIESLENYLSRLKSYMRLYAALIQTEIPGVQNAHGLKEGWAWLARFLNALPANIYTAVALNAFLQLAGFALFKKYKSQFRKILDNIYDNFLNALKAREDSKLNLVIAEIQYYIEDKKFLEEPEGRTLQAPPLSSTLVPEADYQEYG

*******LRCPQKVDGIAIDPEPDWSFDALL**************************************************************GSLVAVKRFTCDALYLS********VALGGESYLMDEVGLADGALVELTHQHQLGVKEEIRNLISTLET********************************************************************************************************************************************************************************************************************DISRLIRQIRGLKDNVRTKASELVKILNNPLCPQSISLATFSKKVVSRCETPDDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYREEDGKIESLENYLSRLKSYMRLYAALIQTEIPGVQNAHGLKEGWAWLARFLNALPANIYTAVALNAFLQLAGFALFKKYKSQFRKILDNIYDNFLNALKAREDSKLNLVIAEIQYYIEDKKFL***************************

*******************D**PDWSFDA***************************************************************************************************************************************************************************************************************************************************************************************************************AVRATESALNIEQKRLQKLKE************************************************NNPLCPQSISLATFSKKVV*****P*DNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYREEDGKIESLENYLSRLKSYMRLYAALIQTEIPGVQNAHGLKEGWAWLARFLNALPANIYTAVALNAFLQLAGFALFKKYKSQFRKILDNIYDNFLNAL************AEIQYYIEDKKFLE**************************

MGAIKLELRCPQKVDGIAIDPEPDWSFDALLSELNSLETRLNASS******************VESNARAFVIRVSDDELENDNERKGEEVHNGSLVAVKRFTCDALYLSESDDSDDDVALGGESYLMDEVGLADGALVELTHQHQLGVKEEIRNLISTLETQLISENEQSNSALAQVEKDRDMRREMDRKNDTVYQRKIAEALDNHLTAVQRDHELKSQIEERKIRSDA***********LQEEKIRQEKVKAEAEMQAKLRAE****************************ITAGVSQDGACGRQPDDSSV************************ESALNIEQKRLQKLKELDEENQSLKLSSNEDFSGYEKDISRLIRQIRGLKDNVRTKASELVKILNNPLCPQSISLATFSKKVVSRCETPDDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYREEDGKIESLENYLSRLKSYMRLYAALIQTEIPGVQNAHGLKEGWAWLARFLNALPANIYTAVALNAFLQLAGFALFKKYKSQFRKILDNIYDNFLNALKAREDSKLNLVIAEIQYYIEDKKFLEEPEGRTLQAPPLSSTLVPEADYQEYG

*GAIKLELRCPQKVDGIAIDPEPDWSFDALLSELNSLETRLNAS**PVP**********TGKSVESNARAFVIRVSD*************VHNGSLVAVKRFTCDALYLSES*DSDD*VALGGESYLMDEVGLADGALVELTHQHQLGVKEEIRNLISTLETQLISENEQSNSALAQVEKDRDMRREMDRKNDTVYQRKIAEALDNHLTAVQRDHELKSQIEERKIRSDAAYEEAKRKER***********************************************************************SVIAGAQSRGSRSDGTKKLQSAVRATESALNIEQKRLQKLKELDEENQSLKLSSNEDFSGYEKDISRLIRQIRGLKDNVRTKASELVKILNNPLCPQSISLATFSKKVVSRCETPDDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYREEDGKIESLENYLSRLKSYMRLYAALIQTEIPGVQNAHGLKEGWAWLARFLNALPANIYTAVALNAFLQLAGFALFKKYKSQFRKILDNIYDNFLNALKAREDSKLNLVIAEIQYYIEDKKFLEEPE**TLQAPPLSSTLVPEADY***G

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

MGAIKLELRCPQKVDGIAIDPEPDWSFDALLSELNSLETRLNASSKPVPFTKTKSREISTGKSVESNARAFVIRVSDDELENDNERKGEEVHNGSLVAVKRFTCDALYLSESDDSDDDVALGGESYLMDEVGLADGALVELTHQHQLGVxxxxxxxxxxxxxxxxxxxxxSNSALAQVEKDRDMRREMDRKNDTVYQRKIAEALDNHLTAVQRDHELKSQIEERKIRSDAAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKRITAGVSQDGACGRQPDDSSVIAGAQSRGSRSDGTKKLQSAxxxxxxxxxxxxxxxxxxxxxDEENQSLKLSSNEDxxxxxxxxxxxxxxxxxxxxxVRTKASELVKILNNPLCPQSISLATFSKKVVSRCETPDDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYREEDGKIESLENYLSRLKSYMRLYAALIQTEIPGVQNAHGLKEGWAWLARFLNALPANIYTAVALNAFLQLAGFALFKKYKSQFRKILDNIYDNFLNALKAREDSKLNLVIAEIQYYIEDKKFLEEPEGRTLQAPPLSSTLVPEADYQEYG

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		638	2.2.26 [Sep-21-2011]
Q5RAS2		698	Nucleoporin GLE1 OS=Pongo	yes	no	0.266	0.243	0.354	8e-26
Q53GS7		698	Nucleoporin GLE1 OS=Homo	yes	no	0.268	0.244	0.352	9e-26
Q4KLN4		698	Nucleoporin GLE1 OS=Rattu	no	no	0.268	0.244	0.352	2e-25
Q8R322		699	Nucleoporin GLE1 OS=Mus m	yes	no	0.268	0.244	0.347	2e-25
Q3ZBK7		698	Nucleoporin GLE1 OS=Bos t	yes	no	0.268	0.244	0.342	2e-24
Q6DRB1		695	Nucleoporin GLE1 OS=Danio	yes	no	0.272	0.250	0.326	2e-23
Q9V4W1		677	Nucleoporin GLE1 OS=Droso	yes	no	0.315	0.296	0.283	2e-15

>sp\|Q5RAS2\|GLE1_PONAB Nucleoporin GLE1 OS=Pongo abelii GN=GLE1 PE=2 SV=1	Back alignment and function desciption

 Score =  119 bits (298), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 66/186 (35%), Positives = 104/186 (55%), Gaps = 16/186 (8%)

Query: 436 YVIVLVASQV----PQVMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYREED 491
           + I +VAS +    P+V D++L   H+ C Y+VP +  F E    + E Y + +GY+ +D
Sbjct: 500 FPIAVVASGIWELHPRVGDLILAHLHKKCPYSVPFYPTFKEGM--ALEDYQRMLGYQVKD 557

Query: 492 GKIESLENYLSRLKSYMRLYAALIQTEIPGVQ----NAHGLKEGWAWLARFLNALPANIY 547
            K+E  +N+L R+   +RLYAA+IQ   P       + HGL  GW WLA+ LN  P +  
Sbjct: 558 SKVEQQDNFLKRMSGMIRLYAAIIQLRWPYGNRQEIHPHGLNHGWRWLAQILNMEPLSDV 617

Query: 548 TAVALNAFLQLAGFALFKKYKSQFRKILDNIYDNFLNALKAREDSKLNLVIAEIQYYIED 607
           TA  L  FL++ G AL K+Y+ QF K+L  I +++   ++A   S       ++  +I  
Sbjct: 618 TATLLFDFLEVCGNALMKQYQVQFWKMLILIKEDYFPRIEAITSS------GQMGSFIRL 671

Query: 608 KKFLEE 613
           K+FLE+
Sbjct: 672 KQFLEK 677

Required for the export of mRNAs containing poly(A) tails from the nucleus into the cytoplasm. May be involved in the terminal step of the mRNA transport through the nuclear pore complex (NPC).
Pongo abelii (taxid: 9601)

>sp\|Q53GS7\|GLE1_HUMAN Nucleoporin GLE1 OS=Homo sapiens GN=GLE1 PE=1 SV=2	Back alignment and function description

>sp\|Q4KLN4\|GLE1_RAT Nucleoporin GLE1 OS=Rattus norvegicus GN=Gle1 PE=2 SV=1	Back alignment and function description

>sp\|Q8R322\|GLE1_MOUSE Nucleoporin GLE1 OS=Mus musculus GN=Gle1 PE=2 SV=2	Back alignment and function description

>sp\|Q3ZBK7\|GLE1_BOVIN Nucleoporin GLE1 OS=Bos taurus GN=GLE1 PE=2 SV=1	Back alignment and function description

>sp\|Q6DRB1\|GLE1_DANRE Nucleoporin GLE1 OS=Danio rerio GN=gle1 PE=2 SV=2	Back alignment and function description

>sp\|Q9V4W1\|GLE1_DROME Nucleoporin GLE1 OS=Drosophila melanogaster GN=GLE1 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		638
296081385		701	unnamed protein product [Vitis vinifera]	0.981	0.893	0.616	0.0
359473158		680	PREDICTED: uncharacterized protein LOC10	0.979	0.919	0.618	0.0
147859341		745	hypothetical protein VITISV_036820 [Viti	0.985	0.844	0.591	0.0
255547998		613	Nucleoporin GLE1, putative [Ricinus comm	0.945	0.983	0.594	0.0
356538127		629	PREDICTED: uncharacterized protein LOC10	0.924	0.937	0.535	1e-172
449435436		641	PREDICTED: uncharacterized protein LOC10	0.978	0.973	0.545	1e-168
357463209		599	Nucleoporin GLE1 [Medicago truncatula] g	0.871	0.928	0.515	1e-155
15222184		611	embryo defective 1745 protein [Arabidops	0.920	0.960	0.483	1e-149
297849694		614	EMB1745 [Arabidopsis lyrata subsp. lyrat	0.913	0.949	0.485	1e-148
4850395		635	EST gb\|N37870 comes from this gene [Arab	0.929	0.933	0.472	1e-146

>gi\|296081385\|emb\|CBI16818.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score =  753 bits (1945), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/650 (61%), Positives = 488/650 (75%), Gaps = 24/650 (3%)

Query: 1   MGAIKLELRCPQKVDGI-AIDPEPDWSFDALLSELNSLETRLNASSK-PVPFTKTKSREI 58
           MGA+KLELRCPQ  +GI A DPEPDWSF+AL+SELNSLE +LN+SS  P+PFTKT+SR +
Sbjct: 40  MGAVKLELRCPQNENGIIAADPEPDWSFEALVSELNSLELKLNSSSIFPIPFTKTESRGL 99

Query: 59  STGKSVESNARAFVIRVSDDELENDNERKG--EEVHNGSLVAVKRFTCDALYLSESDDSD 116
           S   +V+    AFV+RVSDDE+E D ER+G  E V++ SLVA  RF CD LYLS   DSD
Sbjct: 100 S---NVKKGPTAFVMRVSDDEME-DVEREGGVEGVYDRSLVAGSRFACDELYLS---DSD 152

Query: 117 DDVALGGESYLMDEVGLADGALVELTHQHQLGVKEEIRNLISTLETQLISENEQSNSALA 176
           D+  L  + +LMD+ G+A+GA  ELTH+HQL VKEE+R  IS LET L  E ++S SA+ 
Sbjct: 153 DESNLHDQFHLMDKAGVAEGAFFELTHEHQLAVKEEVRTQISVLETDLTHERKKSTSAIV 212

Query: 177 QVEKDRDMRREMDRKNDTVYQRKIAEALDNHLTAVQRDHELKSQIEERKIRSDAAYEEAK 236
           +VEK  + RREMDRK D  YQR IAEALDNH+TAVQRDHE +SQIEER+IR++AA+EEA 
Sbjct: 213 RVEKYIEARREMDRKLDIQYQRNIAEALDNHMTAVQRDHEHRSQIEERRIRNEAAFEEA- 271

Query: 237 RKERALQEEKIRQEKVKAEA----EMQAKLRAEEAKRAALEAEKRAAKEAAEREAAENSK 292
           RKE+ALQEEK+RQEK KAEA    E+ AK RAEEAK AALE E+RAAKEAAERE    S 
Sbjct: 272 RKEKALQEEKLRQEKAKAEAKVRLELAAKKRAEEAKIAALEDERRAAKEAAEREGIGAST 331

Query: 293 RITAGVSQDGACGRQPDDSSVIAGAQSRGSRSDGTKKLQSA---VRATESALNIEQKRLQ 349
           R    V+   A G Q D S  I  AQ  GS++DGTKK QSA   +++ ESAL +EQ+RLQ
Sbjct: 332 RAATEVAPKEATGHQRDASLGILNAQLNGSKTDGTKKAQSAGNILKSAESALKLEQERLQ 391

Query: 350 KLKELDEENQSLKLSSNEDFSGYEKDISRLIRQIRGLKDNVRTKASELVKILNNPLCPQS 409
           K KE DE+ Q+L  SSN+DF  +E+  +R IRQI G K+NVRTK + L+K+ N+PLCPQ 
Sbjct: 392 KYKEFDEKTQALGQSSNKDFQRHEQQFARRIRQISGSKENVRTKGNALIKMFNDPLCPQP 451

Query: 410 ISLATFSKKVVSRCETPDDN-VAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPKHI 468
           I++A F KKVVS  E    + V  +CG+VIV VASQVP  MD+LL E HR CIYTVPKHI
Sbjct: 452 INVAIFVKKVVSYFEVDQPSKVTYACGHVIVFVASQVPYAMDLLLAELHRVCIYTVPKHI 511

Query: 469 VFSEAAFESEEAYYKTIGYREEDGKIESLENYLSRLKSYMRLYAALIQTEIPGVQNAHGL 528
            +S++AF+S+E YYK IGYREE+GKIE  E+YL RL  YM+LYAAL+QTE  GV+N HGL
Sbjct: 512 DYSKSAFKSKEDYYKMIGYREENGKIERTEDYLKRLACYMKLYAALVQTEADGVKNPHGL 571

Query: 529 KEGWAWLARFLNALPANIYTAVALNAFLQLAGFALFKKYKSQFRKILDNIYDNFLNALKA 588
           KEGWAWLARFLNALPAN+YTAVAL  FLQ+AGFALF+KY+SQFRKIL  I  NFL ALKA
Sbjct: 572 KEGWAWLARFLNALPANVYTAVALEVFLQVAGFALFRKYRSQFRKILKVISGNFLVALKA 631

Query: 589 R----EDSKLNLVIAEIQYYIEDKKFLEEPEGRTLQAPPLSSTLVPEADY 634
           +    ++ KL  VI  IQYY+E  +FL+EPEG  +Q   LS ++ PE DY
Sbjct: 632 QGEKVKEPKLKQVIGNIQYYVEKNEFLQEPEGWRMQGSLLSGSMAPELDY 681

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359473158\|ref\|XP_002282194.2\| PREDICTED: uncharacterized protein LOC100245667 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|147859341\|emb\|CAN81849.1\| hypothetical protein VITISV_036820 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255547998\|ref\|XP_002515056.1\| Nucleoporin GLE1, putative [Ricinus communis] gi\|223546107\|gb\|EEF47610.1\| Nucleoporin GLE1, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|356538127\|ref\|XP_003537556.1\| PREDICTED: uncharacterized protein LOC100802744 [Glycine max]	Back alignment and taxonomy information

>gi\|449435436\|ref\|XP_004135501.1\| PREDICTED: uncharacterized protein LOC101216938 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|357463209\|ref\|XP_003601886.1\| Nucleoporin GLE1 [Medicago truncatula] gi\|355490934\|gb\|AES72137.1\| Nucleoporin GLE1 [Medicago truncatula]	Back alignment and taxonomy information

>gi\|15222184\|ref\|NP_172771.1\| embryo defective 1745 protein [Arabidopsis thaliana] gi\|110737727\|dbj\|BAF00802.1\| hypothetical protein [Arabidopsis thaliana] gi\|332190851\|gb\|AEE28972.1\| embryo defective 1745 protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297849694\|ref\|XP_002892728.1\| EMB1745 [Arabidopsis lyrata subsp. lyrata] gi\|297338570\|gb\|EFH68987.1\| EMB1745 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|4850395\|gb\|AAD31065.1\|AC007357_14 EST gb\|N37870 comes from this gene [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		638
TAIR\|locus:2031835		611	GLE1 [Arabidopsis thaliana (ta	0.630	0.657	0.404	2.4e-106
UNIPROTKB\|B3KMG0		444	GLE1 "Nucleoporin GLE1" [Homo	0.407	0.585	0.290	5.4e-20
UNIPROTKB\|F1RR80		698	GLE1 "Uncharacterized protein"	0.457	0.418	0.282	7.6e-20
UNIPROTKB\|E2RSW4		697	GLE1 "Uncharacterized protein"	0.468	0.428	0.289	2.1e-19
UNIPROTKB\|Q53GS7		698	GLE1 "Nucleoporin GLE1" [Homo	0.407	0.372	0.290	2.1e-19
ZFIN\|ZDB-GENE-040831-4		717	gle1 "GLE1 RNA export mediator	0.277	0.246	0.335	3.8e-19
RGD\|1310843		697	Gle1-ps1 "GLE1 RNA export medi	0.319	0.292	0.327	4.5e-19
MGI\|MGI:1921662		699	Gle1 "GLE1 RNA export mediator	0.413	0.377	0.290	4.5e-19
RGD\|1307329		698	Gle1 "GLE1 RNA export mediator	0.452	0.414	0.282	6e-19
UNIPROTKB\|Q3ZBK7		698	GLE1 "Nucleoporin GLE1" [Bos t	0.413	0.378	0.286	1.6e-18

TAIR\|locus:2031835 GLE1 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 723 (259.6 bits), Expect = 2.4e-106, Sum P(2) = 2.4e-106
 Identities = 175/433 (40%), Positives = 248/433 (57%)

Query:     1 MGAIKLELRCPQKVDGIAIDPEPDWSFDALLSELNSLETRLNASSK-PVPFTKTKSREIS 59
             MG + LE  CP+ VDGI+IDPEP+W+F++L++E+ S+E +LN  S  P P T T  R   
Sbjct:     1 MGIV-LEPPCPKSVDGISIDPEPNWNFESLVAEIASVEKKLNGFSMYPQPITNTTLR--- 56

Query:    60 TGKSVESNARAFVIRVSDDELEND-----NERKGEEVHNGSLVAVKRFTCDALYLSEXXX 114
              G+        FV+ VS+DE+E+D     ++ + EE H+    A KRF CD LYLS+   
Sbjct:    57 MGR----RGGGFVMHVSEDEMESDEGEESDDEEEEEDHSQICTAGKRFACDELYLSDESD 112

Query:   115 XXXXVALGGESYLMDEVGLADGALVELTHQHQLGVKEEIRNLISTLETQLISENEQSNSA 174
                        Y+M+++GLA+ AL E+ + HQ  +K++IRN +S +ET++++E E S SA
Sbjct:   113 EEFDHE---PEYMMNKLGLAESALYEVINDHQTEIKDDIRNQVSVVETEIMNEIETSLSA 169

Query:   175 LAQVXXXXXXXXXXXXXXXTVYQRKIAEALDNHLTAVQRDHELKSQIEERKIRSDXXXXX 234
             +A+V                 YQRK+AEALD HLTAVQR+H++KSQIEERKIRS+     
Sbjct:   170 IARVEKYSETRKEVERKLDLQYQRKVAEALDTHLTAVQREHKIKSQIEERKIRSEEAQEE 229

Query:   235 XXXXXXXLQEEKIRQEKVKAEAEMQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSKRI 294
                     QEEKIRQEK +AEA+M                               + K  
Sbjct:   230 ARRKERAHQEEKIRQEKARAEAQM----LAKIRAEEEKKEVERKAAREVAEKEVADRKAA 285

Query:   295 TAGVSQDGACGRQPDDSSVIAGAQSRGSRSDGTKKLQSAVRATESALNIEQKRLQKLKEL 354
                +++  A       SS  + AQ+ G+          ++RA ESAL +E  RL+KL+EL
Sbjct:   286 EQKLAEQKAVIESVTGSSATSNAQAGGN----------SIRAAESALILENHRLKKLEEL 335

Query:   355 DEENQSLKLSSNEDFSGYEKDISRLIRQIRGLKDNVRTKASELVKILNNPLCPQSISLAT 414
             +  NQSLK  SNE+FS +EK I R+IRQI G KD+V  K +++VKI  +P CP SIS+A 
Sbjct:   336 ETTNQSLKSRSNENFSSFEKHIGRVIRQISGTKDSVSGKINDIVKIFKDPRCPVSISIAA 395

Query:   415 FSKKVVSRCETPD 427
             F+KK+V+  E P+
Sbjct:   396 FAKKMVTTKEKPN 408

GO:0005634 "nucleus" evidence=ISM

GO:0005643 "nuclear pore" evidence=IEA

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0005635 "nuclear envelope" evidence=IDA

GO:0006312 "mitotic recombination" evidence=RCA

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

GO:0048316 "seed development" evidence=IMP

UNIPROTKB\|B3KMG0 GLE1 "Nucleoporin GLE1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F1RR80 GLE1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|E2RSW4 GLE1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|Q53GS7 GLE1 "Nucleoporin GLE1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-040831-4 gle1 "GLE1 RNA export mediator homolog (yeast)" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

RGD\|1310843 Gle1-ps1 "GLE1 RNA export mediator homolog (yeast), pseudogene 1" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

MGI\|MGI:1921662 Gle1 "GLE1 RNA export mediator (yeast)" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

RGD\|1307329 Gle1 "GLE1 RNA export mediator homolog (yeast)" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|Q3ZBK7 GLE1 "Nucleoporin GLE1" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00030727001	SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (517 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		638
pfam07817		249	pfam07817, GLE1, GLE1-like protein	2e-71
PRK09510		387	PRK09510, tolA, cell envelope integrity inner memb	4e-06
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-06
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	7e-06
TIGR02794		346	TIGR02794, tolA_full, TolA protein	1e-05
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-05
TIGR02794		346	TIGR02794, tolA_full, TolA protein	3e-05
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	3e-05
TIGR02794		346	TIGR02794, tolA_full, TolA protein	4e-05
TIGR02794		346	TIGR02794, tolA_full, TolA protein	5e-05
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	1e-04
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	5e-04
PRK05035		695	PRK05035, PRK05035, electron transport complex pro	6e-04
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.001
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.001
PRK09510		387	PRK09510, tolA, cell envelope integrity inner memb	0.002
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.002
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.002
COG5269		379	COG5269, ZUO1, Ribosome-associated chaperone zuoti	0.002
COG3064		387	COG3064, TolA, Membrane protein involved in colici	0.003
PRK12472		508	PRK12472, PRK12472, hypothetical protein; Provisio	0.004

>gnl\|CDD\|219595 pfam07817, GLE1, GLE1-like protein	Back alignment and domain information

 Score =  230 bits (589), Expect = 2e-71
 Identities = 89/261 (34%), Positives = 129/261 (49%), Gaps = 21/261 (8%)

Query: 330 LQSAVRATESALNIEQKRLQKLKELDEENQSLKLSSNEDFSGYEKDISRLIRQIRGLKDN 389
            ++ +   +SA+ +   R  +LK+L    +          S     ++R+  ++  L   
Sbjct: 1   YKNKIEQIKSAVKLPLNRDPELKKLRFTLKRKINPKFGQLSNSSSQLARITNKLSQL--- 57

Query: 390 VRTKASELVKILNNPLCPQSISLATFSKKVVSRCETP---DDNVAMSCGYVIVLVASQVP 446
                  +    N+        L  F+KK+VS+ ET        A     V +L+ SQ P
Sbjct: 58  -------ISVAKNDHPLAYKWILNFFAKKIVSQAETEVAVKPEAAFPLAAVALLLLSQFP 110

Query: 447 QVMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYREEDG-KIESLENYLSRLK 505
           +  D+LL   H+ C Y VPKH  ++ +     E   K +GY+  DG K E   +YL R+ 
Sbjct: 111 EFGDLLLARLHKKCPYVVPKHPGYTCSI--DTEDGRKRMGYKRTDGGKWEDETSYLERMA 168

Query: 506 SYMRLYAALIQTEIPGVQNA---HGLKEGWAWLARFLNALPANI--YTAVALNAFLQLAG 560
             MRLYAA+IQTEIPG  N    HGL+ GW WLAR LN  PA +    A  L +FL+ AG
Sbjct: 169 GIMRLYAAIIQTEIPGGSNTTHPHGLEHGWRWLARILNTPPALLTNTHATILASFLEAAG 228

Query: 561 FALFKKYKSQFRKILDNIYDN 581
           FAL +KY  QFRK+L  I ++
Sbjct: 229 FALLRKYGKQFRKLLKVIQED 249

The members of this family are sequences that are similar to the human protein GLE1. This protein is localised at the nuclear pore complexes and functions in poly(A)+ RNA export to the cytoplasm. Length = 249

>gnl\|CDD\|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|234017 TIGR02794, tolA_full, TolA protein	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|234017 TIGR02794, tolA_full, TolA protein	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|234017 TIGR02794, tolA_full, TolA protein	Back alignment and domain information

>gnl\|CDD\|234017 TIGR02794, tolA_full, TolA protein	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|235334 PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|227594 COG5269, ZUO1, Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>gnl\|CDD\|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>gnl\|CDD\|237110 PRK12472, PRK12472, hypothetical protein; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		638
KOG2412		591	consensus Nuclear-export-signal (NES)-containing p	100.0
PF07817		256	GLE1: GLE1-like protein; InterPro: IPR012476 The m	100.0
PTZ00121		2084	MAEBL; Provisional	97.39
PTZ00121		2084	MAEBL; Provisional	97.35
KOG2412		591	consensus Nuclear-export-signal (NES)-containing p	97.34
KOG1029		1118	consensus Endocytic adaptor protein intersectin [S	96.96
KOG0163		1259	consensus Myosin class VI heavy chain [Cytoskeleto	96.64
PF02854		209	MIF4G: MIF4G domain; InterPro: IPR003890 This entr	96.2
KOG0163		1259	consensus Myosin class VI heavy chain [Cytoskeleto	96.05
COG3064		387	TolA Membrane protein involved in colicin uptake [	96.0
PRK09510		387	tolA cell envelope integrity inner membrane protei	95.93
PRK09510		387	tolA cell envelope integrity inner membrane protei	95.83
COG3064		387	TolA Membrane protein involved in colicin uptake [	95.8
PTZ00266		1021	NIMA-related protein kinase; Provisional	95.8
KOG1029		1118	consensus Endocytic adaptor protein intersectin [S	95.02
PTZ00266		1021	NIMA-related protein kinase; Provisional	94.87
smart00543		200	MIF4G Middle domain of eukaryotic initiation facto	94.27
PF09726		697	Macoilin: Transmembrane protein; InterPro: IPR0191	92.25
KOG1144		1064	consensus Translation initiation factor 5B (eIF-5B	91.69
PF05262		489	Borrelia_P83: Borrelia P83/100 protein; InterPro:	91.4
KOG0742		630	consensus AAA+-type ATPase [Posttranslational modi	91.14
KOG2140		739	consensus Uncharacterized conserved protein [Gener	90.31
KOG4364		811	consensus Chromatin assembly factor-I [Chromatin s	89.91
KOG3054		299	consensus Uncharacterized conserved protein [Funct	87.57
COG4942		420	Membrane-bound metallopeptidase [Cell division and	87.4
PF05262		489	Borrelia_P83: Borrelia P83/100 protein; InterPro:	86.13
PF05672		171	MAP7: MAP7 (E-MAP-115) family; InterPro: IPR008604	85.65
KOG1144		1064	consensus Translation initiation factor 5B (eIF-5B	84.28
KOG2002		1018	consensus TPR-containing nuclear phosphoprotein th	82.91
KOG2072		988	consensus Translation initiation factor 3, subunit	80.51
COG2268		548	Uncharacterized protein conserved in bacteria [Fun	80.48
PF09726		697	Macoilin: Transmembrane protein; InterPro: IPR0191	80.24
COG4942		420	Membrane-bound metallopeptidase [Cell division and	80.11

>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]	Back alignment and domain information

Probab=100.00  E-value=1.1e-98  Score=808.03  Aligned_cols=566  Identities=36%  Similarity=0.550  Sum_probs=482.7

Q ss_pred             CCccccccCCCCccCccccCCCCCCCHHHHHHHHHHHHHHhccCC-CCcccccccccccccCccccccccceEEEecccc
Q 006613            1 MGAIKLELRCPQKVDGIAIDPEPDWSFDALLSELNSLETRLNASS-KPVPFTKTKSREISTGKSVESNARAFVIRVSDDE   79 (638)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~dp~p~w~~~~~~~e~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~fv~r~~~~~   79 (638)
                      || +.|+..||.+++|++|||+|+|+|.||++++.|.+.+||+++ +|+|+|.++-+.       ++++..|||.|++|+
T Consensus         1 e~-~pl~ep~p~s~~~~~id~epn~~fpdl~a~~as~~~~l~~~gk~~~~~t~~~v~d-------~~~~~~~~~~~~e~e   72 (591)
T KOG2412|consen    1 EG-IPLEEPCPKSVDGISIDPEPNWNFPDLVAEIASVEKKLNGFGKYPQPITNTTVRD-------GRRGGGFVMHVSEDE   72 (591)
T ss_pred             CC-CCCCCCCCCCcccccCCCCCCCCchhHHHHhhhhhhhhcccCCCccHHHHHHHHh-------hhccCCccchhHHHH
Confidence            56 789999999999999999999999999999999999999999 999999887776       678999999999999


Q ss_pred             ccccc-----cccccccccCccccccceecccccccCCCCCccccccCCcc-ccccccccchhhhhHhhhhhccccHHHH
Q 006613           80 LENDN-----ERKGEEVHNGSLVAVKRFTCDALYLSESDDSDDDVALGGES-YLMDEVGLADGALVELTHQHQLGVKEEI  153 (638)
Q Consensus        80 ~~~~~-----~~~~~~~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~~~~-~l~~~~~~~~~~l~e~~~~~~~~~~e~~  153 (638)
                      ++++.     +...++.+++.+++|++|+|+.||++|.++++    +++++ +.|++.++..+.    .++|++.+..++
T Consensus        73 ~~~~~~~~sq~~l~e~~~s~~~~a~t~m~~~qL~~~~~~~~~----~~~e~~~~l~~L~~~~~~----~~q~~~~~~~~~  144 (591)
T KOG2412|consen   73 MESDEGEESQDELEEEDHSQKCTAGTRMACAQLYLSDESDEE----FDHENEQDLNKLGLKESA----INQRQTEIKSDI  144 (591)
T ss_pred             HHhcccccccCcccCcchhHhhhccchhHHHHHHHHHHhhhh----hhcchhhhHHHHHHhhcc----chhhhHhHHhhh
Confidence            98765     55678899999999999999999999988777    77788 888899998887    589999999999


Q ss_pred             HHHHHHHHHHHHh-HhhhhHHHHHhhHHHHHhHHHhhhhcchHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHhhhHHHH
Q 006613          154 RNLISTLETQLIS-ENEQSNSALAQVEKDRDMRREMDRKNDTVYQRKIAEALDNHLTAVQRDHELKSQIEERKIRSDAAY  232 (638)
Q Consensus       154 r~~~~~~e~~~~~-e~~~~~~~~~~~~k~~~~r~e~~r~~~~~~qr~iae~~~~~~~~~~r~~e~~~q~~er~ir~~aa~  232 (638)
                      |.++..+..-..+ ++.+..+....++++.++|.|+.+++ .++|++++..+|+|++.++|.++..+||.+|++++++..
T Consensus       145 ~~ki~~~~~pea~~~~~~n~e~~~l~~~~~e~~~~~~~r~-~e~Q~qv~qsl~~el~~i~~~~q~~eqi~~~~~~~e~kr  223 (591)
T KOG2412|consen  145 RAKILNSPLPEANQEIETNAENIRLVEKLSETRKEVKRRL-LEEQNQVLQSLDTELQAIQREKQRKEQIRERKERSEEKR  223 (591)
T ss_pred             hhhhhcCCChHHHHHHHhhHHHHHhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            9999887765554 78888999999999999999999999 999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCCCCCCCCCcc
Q 006613          233 EEAKRKERALQEEKIRQEKVKAEAEMQAKLRAEEAKRAALEAEKRAAKEAAEREAAENSKRITAGVSQDGACGRQPDDSS  312 (638)
Q Consensus       233 eEA~rke~a~qee~~rq~~ak~eae~~a~~~ae~~~k~a~ea~~k~a~e~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (638)
                      +||.|++++.|||+.+++...++++++++.|++|+++   |.+.|++.++.+.+...- ++...+.+          .+.
T Consensus       224 ~Eaerk~~~~qEe~Rqk~d~~~~~~eqekiR~~eekq---eee~ke~e~~~~k~~q~~-~~~eek~a----------~qk  289 (591)
T KOG2412|consen  224 EEAERKRRAHQEELRQKEDEEAELQEQEKIRAEEEKQ---EEERKEAEEQAEKEVQDP-KAHEEKLA----------EQK  289 (591)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---HHHHHHHHHHHHHHhcCc-hhcccccc----------ccc
Confidence            9999999999999999999999999999999887662   223333332221111100 00001111          111


Q ss_pred             cccccccCCCCCCcchhhhhhHHhhHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccCcchh-HH
Q 006613          313 VIAGAQSRGSRSDGTKKLQSAVRATESALNIEQKRLQKLKELDEENQSLKLSSNEDFSGYEKDISRLIRQIRGLKDN-VR  391 (638)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~sal~~~~~r~k~LKel~~~~~~lks~lkk~~~~~rRqI~~kIGQLSns~~Q-I~  391 (638)
                      ...|.+...+..|-..--++...++.+.+....-+.++..++++           -..+++|+||+.|||||++..| |.
T Consensus       290 ~~~~~~~~~~~~ds~m~w~~~d~i~q~k~d~v~pi~~kd~~lk~-----------~~~~~kr~in~~~~qis~~~~q~L~  358 (591)
T KOG2412|consen  290 AVIEKVTTSSASDSQMFWNSQDAIAQSKLDLVNPILKKDEELKN-----------YNQSLKRAINPPFSQISKSNGQVLR  358 (591)
T ss_pred             cccccccCCchhHHHhhhhHHHHHHHHHHHHHhhhhhHHHHHHH-----------HHHHHHhhcCCChhhhhhccHHHHH
Confidence            12222222222222222233466777777777777776555554           4448899999999999999988 99


Q ss_pred             HHHHHHHHHhcCCC-----ChHHHHHHHHHHHHHhhccCC---CCCcchhHHHHHHHHHhhCccHHHHHHHHhhhcceee
Q 006613          392 TKASELVKILNNPL-----CPQSISLATFSKKVVSRCETP---DDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIYT  463 (638)
Q Consensus       392 ~Is~eL~~lL~~~q-----lP~~i~Ln~lAKkIIsQaEt~---~~~sAfPlA~V~v~L~~~~Pef~DILLArf~kkCP~l  463 (638)
                      .|++.|.+++++.+     +.|.||+|+|||++|+|+|++   +|.+|||||+|++.||++||+|+|+|||||||+|||+
T Consensus       359 qI~dkl~s~~~~~~~~~~pl~~~~~~~~iaka~V~Q~Etev~~~PeaAfPla~V~l~i~~q~Pdv~dlllA~l~KkCP~~  438 (591)
T KOG2412|consen  359 QIFDKLDSLFGGIPDIVDPLAYDWCLNFIAKAFVKQAETEVASKPEAAFPLAKVILYIWSQFPDVGDLLLARLHKKCPYV  438 (591)
T ss_pred             HHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhCchHHHHHHHHHHhcCCcc
Confidence            99999999998743     458899999999999999994   6789999999999999999999999999999999999


Q ss_pred             ccccccccccccccHHHHHHHcCccc-CCCcccchhhHHHHHHHHHHHHHHHHhcCCC----CCCCCCCcchHHHHHHHH
Q 006613          464 VPKHIVFSEAAFESEEAYYKTIGYRE-EDGKIESLENYLSRLKSYMRLYAALIQTEIP----GVQNAHGLKEGWAWLARF  538 (638)
Q Consensus       464 VP~~~~~~k~~~qTeEey~K~mGYr~-~dG~~Ese~~YlkRMtGI~rLYAAIiqt~~~----~~~nP~gi~~~WkWLARI  538 (638)
                      ||||+++      ++|.|.|+|||+. ++|+||..|.|++||+||+||||||++++.|    +.-||||+.+||.|||||
T Consensus       439 VPf~~~~------~~Eq~~k~mGyk~~d~nk~Eqnd~YleRm~Gi~rLYAAIi~l~~p~~~~~~~hpf~i~~gW~wLA~i  512 (591)
T KOG2412|consen  439 VPFHIVN------STEQYQKMMGYKAWDSNKWEQNDAYLERMDGIMRLYAAIIQLDIPVGNATNVHPFGINHGWAWLARI  512 (591)
T ss_pred             ccccccC------cHHHHHHhhcccccccccccccchHHHHhHhHHHHHHHHHHhcccccCCCCCCcchhhcccHHHHHH
Confidence            9999874      3799999999997 7789999999999999999999999999986    345899999999999999


Q ss_pred             hCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccCCchhHHHHHHHHHHHHhcccccCCC
Q 006613          539 LNALPANIYTAVALNAFLQLAGFALFKKYKSQFRKILDNIYDNFLNALKAREDSKLNLVIAEIQYYIEDKKFLEEPE  615 (638)
Q Consensus       539 LN~~P~~~ita~vL~afLevAG~~Ll~~YG~QF~KLL~lI~~d~~p~L~~~~~~~~~~~v~rLe~~Led~~~l~ePE  615 (638)
                      ||+.|.+++||++|.+||++||+.|++.||+||.|||.+|.++|+|++.++++.|..++.+.|+.|| |+.+...|+
T Consensus       513 ln~~p~~~~tatll~s~Lq~aG~~L~q~Yg~Qf~Klli~i~E~y~~r~~a~~~~g~~rl~ill~~~l-~~q~~~~~~  588 (591)
T KOG2412|consen  513 LNKIPLLDTTATLLNSFLQTAGFGLLQRYGSQFLKLLILIREHYLPRLAAKKDTGDLRLRILLEAWL-DRQYLKEPE  588 (591)
T ss_pred             hCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHH-Hhhhhcccc
Confidence            9999999999999999999999999999999999999999999999999997777788999999999 888888887

>PF07817 GLE1: GLE1-like protein; InterPro: IPR012476 The members of this family are sequences that are similar to the human protein GLE1 (O75458 from SWISSPROT)	Back alignment and domain information

>PTZ00121 MAEBL; Provisional	Back alignment and domain information

>PTZ00121 MAEBL; Provisional	Back alignment and domain information

>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]	Back alignment and domain information

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]	Back alignment and domain information

>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain	Back alignment and domain information

>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]	Back alignment and domain information

>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional	Back alignment and domain information

>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional	Back alignment and domain information

>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>PTZ00266 NIMA-related protein kinase; Provisional	Back alignment and domain information

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PTZ00266 NIMA-related protein kinase; Provisional	Back alignment and domain information

>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G)	Back alignment and domain information

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes	Back alignment and domain information

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins	Back alignment and domain information

>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]	Back alignment and domain information

>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]	Back alignment and domain information

>KOG3054 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]	Back alignment and domain information

>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins	Back alignment and domain information

>PF05672 MAP7: MAP7 (E-MAP-115) family; InterPro: IPR008604 The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs)	Back alignment and domain information

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]	Back alignment and domain information

>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes	Back alignment and domain information

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		638
3pev_B		297	Nucleoporin GLE1; RECA, heat, DEAD-BOX, ATPase, he	4e-53
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-13
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-08
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	4e-07
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	2e-06
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	4e-04
2zuo_A		861	MVP, major vault protein; repeat domains, protein-	1e-06
2zuo_A		861	MVP, major vault protein; repeat domains, protein-	1e-05
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	4e-06
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-04
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-04
3lvg_D		190	LCB, clathrin light chain B; SELF assembly, coated	7e-05

>3pev_B Nucleoporin GLE1; RECA, heat, DEAD-BOX, ATPase, helicase, mRNA export, nuclear hydrolase; HET: IHP; 2.50A {Saccharomyces cerevisiae} PDB: 3peu_B* 3pex_B* 3pez_B* 3rrm_B* 3rrn_B* Length = 297	Back alignment and structure

 Score =  183 bits (465), Expect = 4e-53
 Identities = 42/267 (15%), Positives = 97/267 (36%), Gaps = 26/267 (9%)

Query: 345 QKRLQKLKELDEENQSLKLSSNEDFSGYEKDISRLIR----QIRGLKDNVRTKASELVKI 400
                K+ ++ ++       ++ +         R I     Q+      +    +EL ++
Sbjct: 13  WHYKDKIAQIKQDIVLPIKKADVNVRNLLSRHKRKINPKFGQLTNSNQQLFKIQNELTQL 72

Query: 401 LNNPLCPQSIS---LATFSKKVVSRCET---PDDNVAMSCGYVIVLVASQVPQVMDILLG 454
           +N+           L   +K VV + ET        A+  G + + +  Q P++ ++ + 
Sbjct: 73  INDTKGDSLAYHWILNFIAKAVVHQAETEVRVKPESALPLGKLTLYLLVQFPELQELFMA 132

Query: 455 EFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYR-EEDGKIESLENYLSRLKSYMRLYAA 513
              + C + +              E   + +G++   + K E   +Y  R+   + L+A 
Sbjct: 133 RLVKKCPFVIGFTCE------IDTEKGRQNMGWKRNNENKWEDNTSYDERMGGILSLFAI 186

Query: 514 LIQTEIP-----GVQNAHGLKEGWAWLARFLNALPANIYTAVA---LNAFLQLAGFALFK 565
           + + ++P        +   +   W  LAR  N  P N+ T      L ++   A     +
Sbjct: 187 ITRLQLPQEFITTTSHPFPIALSWHILARICN-TPLNLITNTHFVILGSWWDAAAVQFLQ 245

Query: 566 KYKSQFRKILDNIYDNFLNALKAREDS 592
            Y +Q  K+L  I +   + +  ++  
Sbjct: 246 AYGNQASKLLILIGEELTSRMAEKKYV 272

PyMOL of 3pev

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861	Back alignment and structure

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		638
3pev_B		297	Nucleoporin GLE1; RECA, heat, DEAD-BOX, ATPase, he	100.0
3rk6_A		234	Polyadenylate-binding protein-interacting protein;	87.98
2vso_E		284	Eukaryotic initiation factor 4F subunit P150; acet	84.57
1hu3_A		260	EIF4GII; heat repeat, translation; 2.37A {Homo sap	83.7

>3pev_B Nucleoporin GLE1; RECA, heat, DEAD-BOX, ATPase, helicase, mRNA export, nuclear hydrolase; HET: IHP; 2.50A {Saccharomyces cerevisiae} PDB: 3peu_B* 3pex_B* 3pez_B* 3rrm_B* 3rrn_B*	Back alignment and structure

Probab=100.00  E-value=9.4e-65  Score=523.93  Aligned_cols=266  Identities=15%  Similarity=0.257  Sum_probs=232.7

Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHH-HhhhccccccccccccccccccccccccCcchhHHHHHHHHHHHhcCC---CChHH
Q 006613          334 VRATESALNIEQKRLQKLKELDE-ENQSLKLSSNEDFSGYEKDISRLIRQIRGLKDNVRTKASELVKILNNP---LCPQS  409 (638)
Q Consensus       334 ~~~~~sal~~~~~r~k~LKel~~-~~~~lks~lkk~~~~~rRqI~~kIGQLSns~~QI~~Is~eL~~lL~~~---qlP~~  409 (638)
                      |.+.+..+..|+.+++.||..-. ..+..++++|+.++++||+||++|||||+|.+||++|+++|.++|++.   ++|+.
T Consensus         5 ~~~~~~~~~~y~~~i~~ik~~v~~~~~~~n~~lK~~~~~~kR~I~~~igQLt~s~~qi~~i~~~L~~ll~~~~~~~~~~~   84 (297)
T 3pev_B            5 FDKISKMFWHYKDKIAQIKQDIVLPIKKADVNVRNLLSRHKRKINPKFGQLTNSNQQLFKIQNELTQLINDTKGDSLAYH   84 (297)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTHHHHHHSCHHHHHHHHHHHHHHTTHHHHCCSBHHHHHHHHHHHHHHHHTTTTSHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhccchhccccCCHHHHHHHHHHHHHHHhCccCCchHHH
Confidence            78889999999999999987442 333346689999999999999999999999999999999999999865   46688


Q ss_pred             HHHHHHHHHHHhhccCC---CCCcchhHHHHHHHHHhhCccHHHHHHHHhhhcceeeccccccccccccccHHHHHHHcC
Q 006613          410 ISLATFSKKVVSRCETP---DDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIG  486 (638)
Q Consensus       410 i~Ln~lAKkIIsQaEt~---~~~sAfPlA~V~v~L~~~~Pef~DILLArf~kkCP~lVP~~~~~~k~~~qTeEey~K~mG  486 (638)
                      |+||+|||+||+|||++   ++++|||+|.|++.||..||+|+|+||||||++|||+||||++     .+| ++|+++||
T Consensus        85 ~~ln~lAK~iV~Q~e~ev~~~p~sA~PlA~v~~~l~~~~p~~~dillA~l~k~CP~~vp~~~~-----~~t-eegr~~mG  158 (297)
T 3pev_B           85 WILNFIAKAVVHQAETEVRVKPESALPLGKLTLYLLVQFPELQELFMARLVKKCPFVIGFTCE-----IDT-EKGRQNMG  158 (297)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHSTTHHHHHHHHHHHHCGGGGTCCCC-----CSS-HHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHhccCCcccchHHHHHHHHHHhCccHHHHHHHHHhhcCCcccccCCC-----ccc-HHHHHHcC
Confidence            99999999999999995   5789999999999999999999999999999999999999964     234 77889999


Q ss_pred             ccc-CCCcccchhhHHHHHHHHHHHHHHHHhcCCC-----CCCCCCCcchHHHHHHHHhCCCCCccc---hHHHHHHHHH
Q 006613          487 YRE-EDGKIESLENYLSRLKSYMRLYAALIQTEIP-----GVQNAHGLKEGWAWLARFLNALPANIY---TAVALNAFLQ  557 (638)
Q Consensus       487 Yr~-~dG~~Ese~~YlkRMtGI~rLYAAIiqt~~~-----~~~nP~gi~~~WkWLARILN~~P~~~i---ta~vL~afLe  557 (638)
                      |+. +||+||++++|++||+||++|||||+++++|     +.+||||++++|+|||||||++|. .+   |++||++||+
T Consensus       159 ~~~~~dg~~E~~~~y~~Rm~Gi~~lyAAI~~~~~~~~~~~~~~~p~~~~~~W~wLArilN~~p~-~~t~t~~~vL~~~Le  237 (297)
T 3pev_B          159 WKRNNENKWEDNTSYDERMGGILSLFAIITRLQLPQEFITTTSHPFPIALSWHILARICNTPLN-LITNTHFVILGSWWD  237 (297)
T ss_dssp             CCBCTTSCBCCHHHHHHHHHHHHHHHHHHHHSCCCTTTTTTSCCSSCTHHHHHHHHHHHTSCGG-GCCHHHHHHHHHHHH
T ss_pred             CeeCCCCCcccHHHHHHHHHHHHHHHHHHHhCcCcccccccCCCCCCchHHHHHHHHHhCCCHH-hhcccHHHHHHHHHH
Confidence            986 6899999999999999999999999999854     467999999999999999999554 44   4559999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccCCchhHHHHHHHHHHHH
Q 006613          558 LAGFALFKKYKSQFRKILDNIYDNFLNALKAREDSKLNLVIAEIQYYIE  606 (638)
Q Consensus       558 vAG~~Ll~~YG~QF~KLL~lI~~d~~p~L~~~~~~~~~~~v~rLe~~Le  606 (638)
                      +||++|+++||+||.|||++|.++|+|++++++.+++.++...++.|+.
T Consensus       238 ~ag~~l~~~Yg~Qf~KlL~~i~~~~~~~l~~~~~~~a~RL~~l~e~~~~  286 (297)
T 3pev_B          238 AAAVQFLQAYGNQASKLLILIGEELTSRMAEKKYVGAARLRILLEAWQN  286 (297)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHHTHHHHHTGGGCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCccHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998765554444444444443

PyMOL of 3pev

>3rk6_A Polyadenylate-binding protein-interacting protein; heat fold, PABP, EIF4A, EIF3, translation regulator; 2.00A {Homo sapiens}	Back alignment and structure

>2vso_E Eukaryotic initiation factor 4F subunit P150; acetylation, ATP-binding, phosphoprotein, protein biosynthesis, translation regulation; HET: AMP; 2.6A {Saccharomyces cerevisiae} PDB: 2vsx_E*	Back alignment and structure

>1hu3_A EIF4GII; heat repeat, translation; 2.37A {Homo sapiens} SCOP: a.118.1.14	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		638
d2es4d1		280	a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB)	0.001

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		638
d1hu3a_		243	Eukaryotic initiation factor eIF4G {Human (Homo sa	88.22

>d1hu3a_ a.118.1.14 (A:) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: Eukaryotic initiation factor eIF4G
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.22  E-value=0.35  Score=44.55  Aligned_cols=178  Identities=8%  Similarity=0.044  Sum_probs=93.9

Q ss_pred             cccccccccccccccccCcchhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHHhhCcc
Q 006613          368 DFSGYEKDISRLIRQIRGLKDNVRTKASELVKILNNPLCPQSISLATFSKKVVSRCETPDDNVAMSCGYVIVLVASQVPQ  447 (638)
Q Consensus       368 ~~~~~rRqI~~kIGQLSns~~QI~~Is~eL~~lL~~~qlP~~i~Ln~lAKkIIsQaEt~~~~sAfPlA~V~v~L~~~~Pe  447 (638)
                      ....++|+|+-.+|.||.  +.+..|..+|..+-..  .+  -.+..++..|+..|-.+ |..+..+|.++..|...+|.
T Consensus         7 ~~~~l~r~v~~lLNKLt~--~n~~~i~~ei~~l~~~--~~--~~l~~~v~~I~~kai~e-~~f~~~YA~Lc~~l~~~~~~   79 (243)
T d1hu3a_           7 KTQELFRKVRSILNKLTP--QMFNQLMKQVSGLTVD--TE--ERLKGVIDLVFEKAIDE-PSFSVAYANMCRCLVTLKVP   79 (243)
T ss_dssp             HHHHHHHHHHHHHTCSSC--CCHHHHHHHHTTCCCC--SH--HHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHTTCCCC
T ss_pred             HHHHHHHHHHHHHhhCCH--HHHHHHHHHHHHHHcc--CH--HHHHHHHHHHHHHHHcC-ccccHHHHHHHHHHHHhcCc
Confidence            344678899999999974  4566777777654222  22  23555666666665443 35778888888888777764


Q ss_pred             ----------HHHHHHHHhhhcceeeccccccccccccccHHHHHHHcCccc----CCCcccchhhHHHHHHHHHHHHHH
Q 006613          448 ----------VMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYRE----EDGKIESLENYLSRLKSYMRLYAA  513 (638)
Q Consensus       448 ----------f~DILLArf~kkCP~lVP~~~~~~k~~~qTeEey~K~mGYr~----~dG~~Ese~~YlkRMtGI~rLYAA  513 (638)
                                |+..|+.+++..    +-...................++...    .+...+.....-.|+.|++++.+-
T Consensus        80 ~~~~~~~~~~F~~~Ll~~~q~~----F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~k~~~~g~i~fige  155 (243)
T d1hu3a_          80 MADKPGNTVNFRKLLLNRCQKE----FEKDKADDDVFEKKQKELEAASAPEERTRLHDELEEAKDKARRRSIGNIKFIGE  155 (243)
T ss_dssp             ---------CHHHHHHHHHHHH----HHHHTC------------------------------CCSSHHHHHHHHHHHHHH
T ss_pred             cccccccchHHHHHHHHHHHHH----HHHhhhhhhhhHhhhcccccccchHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence                      555665555332    11110000000000000000000000    001112234567899999999999


Q ss_pred             HHhcCCCCCCCCCCcchHHHH-HHHHhCCCCCccchHHHHHHHHHHHHHHHHH
Q 006613          514 LIQTEIPGVQNAHGLKEGWAW-LARFLNALPANIYTAVALNAFLQLAGFALFK  565 (638)
Q Consensus       514 Iiqt~~~~~~nP~gi~~~WkW-LARILN~~P~~~ita~vL~afLevAG~~Ll~  565 (638)
                      +.....      .+. ..... +..++.. | ++...-+|..+|.++|..|-.
T Consensus       156 Ly~~~~------v~~-~~i~~~l~~Ll~~-~-~e~~ie~l~~lL~~~G~~L~~  199 (243)
T d1hu3a_         156 LFKLKM------LTE-AIMHDCVVKLLKN-H-DEESLECLCRLLTTIGKDLDF  199 (243)
T ss_dssp             HHTTTC------SCH-HHHHHHHHHHHHS-C-SHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHcccc------chH-HHHHHHHHHhcCC-C-CHHHHHHHHHHHHHHHHHHhc
Confidence            886532      121 23333 3334433 3 345677888899999998843

PyMOL of d1hu3a_