Citrus Sinensis ID: 006615

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------64
Protein Sequence
MFSKRFLPAVILSKAFTQLQTRSFVRAPFTNKLALYLRRAQLIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLALRGHIWAVSSADLTRVHSIYRNSITSIVT
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccHHHHHHHHHccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHccccHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEHHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEHHHHHHHHHHHcccHHHHHHHHHHHHHccccccEHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHccccHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mfskrflpAVILSKAFTQLQTRSFVRAPFTNKLALYLRRAQLIDSIRLAVRSNSSNSLSSllndrlldpfIVTHalrsapnadSALSIMEALksnpnfshnqSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIdegaipnsrTYTVMIEHLVNLGKLDSALEVFsalplmrikrTSKQYLILVEGFVGVERFDEAKSLLNEmrddgkfpGRAMRVALERMQEMGFIQGANEFLREmlpdkriknvryyedgsdddedenddnnsgvriaygvqlkpwldpkalantldewSPEVVSLLADAKFVWTTRLVCKVLRhfkspetaWHFFCWvayqpgythDVYALEKMLTILARHGHVELVDRLIAKLRsdgmrlpfSTIRLIIDFYGISKKADAALKAfhddrtlcgpiskFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIfsgivpdvqtfsgLMYHFALQGDEKIVQKLFSMVRqngvepdaYMFKVLIQAYCKYlsnsnlmpdAATKELLKKSLWKEGRRKEAAAVEERCEkindvpslalrghiwavssadltRVHSIYRNSITSIVT
Flexible Loop (DISEMBL)
mfskrflpAVILSkaftqlqtrsfvraPFTNKLALYLRRAQLIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTligdissskFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLnemrddgkfpGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYyedgsdddedenddnnSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLrsdgmrlpFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAveercekindvpslalrGHIWAvssadltrvhsiyrnsitsivt
Low Complexity Region (SEG)
MFSKRFLPAVILSKAFTQLQTRSFVRAPFTNKLALYLRRAQLIDSIRLAVrsnssnslssllndrlldPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYedgsdddedenddnnsgVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPIskfklmllyssllrtltkCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLALRGHIWAVSSADLTRVHSIYRNSITSIVT
Disordered region (IsUnstruct)
*****FLPAVILSKAFTQLQTRSFVRAPFTNKLALYLRRAQLIDSIRLAVR********SLLNDRLLDPFIVTHALR***************************LHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLL*************MRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYY*****************VRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWK********AVEERCEKINDVPSLALRGHIWAVSSADLTRVHSIYRNSIT****
Disordered Region (DISOPRED)
**SKRFLPAVILSKAFTQLQTRSFVRAPFTNKLALYLRRAQLIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLALRGHIWAVSSADLTRVHSIYRNSITSIV*
Disordered Region (DISEMBL)
MFSKRFLPAVILSKAFTQLQTRSFVRAPFTNKLALYLRRAQLIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYED***********NNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWK************RCEKINDVPSLALRGHIWAVSSADLTRVHSIYRNSITSIVT
Disordered Region (DISPRO)
***KRFLPAVILSKAFTQLQTRSFVRAPFTNKLALYLRRAQLIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLALRGHIWAVSSADLTRVHSIYRNSITS***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFSKRFLPAVILSKAFTQLQTRSFVRAPFTNKLALYLRRAQLIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLALRGHIWAVSSADLTRVHSIYRNSITSIVT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	638	2.2.26 [Sep-21-2011]
B3H4P1	661	Pentatricopeptide repeat-	yes	no	0.968	0.934	0.581	0.0
Q9SZ52	1112	Pentatricopeptide repeat-	no	no	0.799	0.458	0.223	5e-19
Q9M907	871	Pentatricopeptide repeat-	no	no	0.857	0.628	0.207	5e-17
Q9LYZ9	819	Pentatricopeptide repeat-	no	no	0.746	0.581	0.210	7e-15
Q9LFF1	754	Pentatricopeptide repeat-	no	no	0.739	0.625	0.197	8e-15
Q0WPZ6	874	Pentatricopeptide repeat-	no	no	0.747	0.545	0.221	2e-14
Q3EDF8	598	Pentatricopeptide repeat-	no	no	0.565	0.603	0.232	1e-13
Q9LSL9	915	Pentatricopeptide repeat-	no	no	0.633	0.441	0.240	2e-13
O64624	822	Pentatricopeptide repeat-	no	no	0.670	0.520	0.201	3e-13
Q9LVQ5	1096	Pentatricopeptide repeat-	no	no	0.609	0.354	0.195	4e-13

>sp|B3H4P1|PP450_ARATH Pentatricopeptide repeat-containing protein At5g66631 OS=Arabidopsis thaliana GN=At5g66631 PE=2 SV=1

 Score =  741 bits (1913), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/643 (58%), Positives = 474/643 (73%), Gaps = 25/643 (3%)

Query: 20  QTRSFVRAPFTNKLALYLRRAQLIDSIRLAVRS--NSSNSLSSLLNDRLLDPFIVTHALR 77
           Q R F R PF NK+  YL RA LIDSIRL++RS   S  +L+SLLN RLLD F+V +ALR
Sbjct: 20  QIRFFSRDPFPNKVQHYLYRANLIDSIRLSLRSPTTSDRTLASLLNHRLLDSFVVKNALR 79

Query: 78  SAPNADSALSIMEALK-SNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNV 136
           S+P+  SA SI + L   +P FS    TLHA ATVLAK QR+ EL +LIG +++ KF NV
Sbjct: 80  SSPSVSSAWSIFKTLSHKSPRFSFETETLHAFATVLAKFQRSSELNSLIGVVNAWKFRNV 139

Query: 137 SVNFMNLMQWYSTSGDLELVLSTWNEYR--QRAKLLSTESYNIVMSVYAKTGKNFEAVET 194
             +FMNL+  Y+T+GD + VL TW+EYR     K   TESYNIVM VY   GK+ EAV+T
Sbjct: 140 HFSFMNLLNLYATAGDFDSVLKTWDEYRCSGEEKKGCTESYNIVMQVYMTLGKDSEAVQT 199

Query: 195 FRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVG 254
           F Q+I+EG IPNSRT+T+MIEHLV LG LD+A+++F  LPLMRI RT K Y +LVE FV 
Sbjct: 200 FDQIINEGGIPNSRTFTIMIEHLVKLGNLDAAMKIFETLPLMRITRTLKHYSVLVEAFVD 259

Query: 255 VERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYY 314
            +RFDE K+L+ EM+ DGKFP R M   L+RM+E GF     EFLREMLPD+RIK++  Y
Sbjct: 260 AQRFDEVKTLIAEMKSDGKFPSRRMLEPLKRMREAGFEHETEEFLREMLPDERIKDISMY 319

Query: 315 E-DGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTT 373
             D   D EDE D+    V  A  V+LKPWLDPKALA +L +WS + V+ L +A FVWT 
Sbjct: 320 SMDNPSDSEDEGDEYKDDVNEA-QVKLKPWLDPKALATSLKKWSSDAVTALEEANFVWTN 378

Query: 374 RLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLR 433
            LVCK+LR+F++PETAW FFCWVA QPG+THD Y +E+M+ +LAR+G VELVD+LI+K+R
Sbjct: 379 LLVCKMLRNFRAPETAWSFFCWVAIQPGFTHDAYTIERMMAMLARNGQVELVDKLISKVR 438

Query: 434 SDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKC 493
            +G++LPFSTIRLIID YGISKK +AA+K F++DRTLCG IS F LMLLYSSLLRTLTKC
Sbjct: 439 IEGIKLPFSTIRLIIDLYGISKKPEAAIKVFNEDRTLCGSISDFNLMLLYSSLLRTLTKC 498

Query: 494 KRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMF 553
           KR+ +A+  LE+M+ +G+ PD+QTFSGLMYHFALQG+ + V++LFSMVRQ G+EPD YM 
Sbjct: 499 KRNAEALETLEDMMLTGVSPDIQTFSGLMYHFALQGEIQTVERLFSMVRQIGLEPDPYML 558

Query: 554 KVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEK 601
           K+L+QAYC+             + +SNLMPD  TKELL KSLW+E +RKEAAAVEE  E+
Sbjct: 559 KLLVQAYCRCERSVLAYRVFQDMKDSNLMPDRETKELLVKSLWREEKRKEAAAVEESYEE 618

Query: 602 IND------VPSLALRGHIWAVSSADLTRVHSIYRNSITSIVT 638
            ND      V  LAL+GH+W +SS D++RV+++YR+ +    T
Sbjct: 619 ENDNKNSSNVLRLALKGHVWTISSTDISRVYNLYRDCVLKTST 661

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZ52|PP344_ARATH Pentatricopeptide repeat-containing protein At4g31850, chloroplastic OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1

 Score = 96.7 bits (239), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 131/585 (22%), Positives = 240/585 (41%), Gaps = 75/585 (12%)

Query: 45  SIRLAVRSNSSNSLSSLLNDRLLDPFI-----VTHALRSAPNADSALSIMEALKSNPNFS 99
           S+R +V S  S+  S  +  +   P +     VT  L+S P+ DS+ S  +++  N N  
Sbjct: 56  SMRCSVVSMKSSDFSGSMIRKSSKPDLSSSEEVTRGLKSFPDTDSSFSYFKSVAGNLNLV 115

Query: 100 HNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVN-FMNLMQWYSTSGDLELVLS 158
           H   T + +   L    +  E+  +  D+   + +    N ++ + +  S  G L+    
Sbjct: 116 HTTETCNYMLEALRVDGKLEEMAYVF-DLMQKRIIKRDTNTYLTIFKSLSVKGGLKQAPY 174

Query: 159 TWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLV 218
              + R+   +L+  SYN ++ +  K+    EA+E +R++I EG  P+ +TY+ +   +V
Sbjct: 175 ALRKMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSL---MV 231

Query: 219 NLGK---LDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            LGK   +DS + +   +  + +K     + I +       + +EA  +L  M D+G  P
Sbjct: 232 GLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGP 291

Query: 276 GRAM-RVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRI 334
                 V ++ +     +  A E   +M      K  R+  D                R+
Sbjct: 292 DVVTYTVLIDALCTARKLDCAKEVFEKM------KTGRHKPD----------------RV 329

Query: 335 AYGVQLKPWLDPKALANTLDEWS--------PEVVS--LLADAKFVWTTRLVCKVLRHFK 384
            Y   L  + D + L +    WS        P+VV+  +L DA        +CK     +
Sbjct: 330 TYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDA--------LCKAGNFGE 381

Query: 385 SPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTI 444
           + +T       V    G   +++    ++  L R   ++    L   + S G++    T 
Sbjct: 382 AFDTLD-----VMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTY 436

Query: 445 RLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLE 504
            + ID+YG S  + +AL+ F   +T          ++  ++ L +L K  RD +A  +  
Sbjct: 437 IVFIDYYGKSGDSVSALETFEKMKTK----GIAPNIVACNASLYSLAKAGRDREAKQIFY 492

Query: 505 EMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY- 563
            +   G+VPD  T++ +M  ++  G+     KL S + +NG EPD  +   LI    K  
Sbjct: 493 GLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKAD 552

Query: 564 -----------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEE 597
                      +    L P   T   L   L K G+ +EA  + E
Sbjct: 553 RVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFE 597

Plays a role in the stabilization of the primary polycistronic transcript of the petL operon encoding subunits of the cytochrome b6-f complex.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M907|PP217_ARATH Pentatricopeptide repeat-containing protein At3g06920 OS=Arabidopsis thaliana GN=At3g06920 PE=2 SV=1

 Score = 90.1 bits (222), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 123/593 (20%), Positives = 248/593 (41%), Gaps = 46/593 (7%)

Query: 51  RSNSSNSLSSLLNDRLLDPFIVTH-----ALRSAPNADSALSIMEALKSNPNFSHNQSTL 105
           R +S+ SL   +    LD  IV +     +       D A      +++N     ++ T 
Sbjct: 218 RVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEAN-GLKPDEVTY 276

Query: 106 HALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQ 165
            ++  VL K+ R  E   +   +  ++ +  +  +  ++  Y ++G  +   S     R 
Sbjct: 277 TSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRA 336

Query: 166 RAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDS 225
           +  + S  +YN +++   K GK  EA++ F ++  + A PN  TY ++I+ L   GKLD+
Sbjct: 337 KGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMKKDAA-PNLSTYNILIDMLCRAGKLDT 395

Query: 226 ALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-E 284
           A E+  ++    +    +   I+V+     ++ DEA ++  EM      P      +L +
Sbjct: 396 AFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLID 455

Query: 285 RMQEMGFIQGANEFLREML-PDKRIKNVRY-------YEDGSDDDEDENDDNNSGVRIAY 336
            + ++G +  A +   +ML  D R  ++ Y       +  G  +D  +   +      + 
Sbjct: 456 GLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSP 515

Query: 337 GVQL-KPWLDPKALANTLDEWSPEVVSLLADAKFVWTTR----LVCKVLRHFKSPETAWH 391
            +QL   ++D    A   ++       + A  +FV   R    L+  +++   + ET   
Sbjct: 516 DLQLLNTYMDCMFKAGEPEKGRAMFEEIKA-RRFVPDARSYSILIHGLIKAGFANETYEL 574

Query: 392 FFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFY 451
           F  +   + G   D  A   ++    + G V    +L+ ++++ G      T   +ID  
Sbjct: 575 F--YSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGL 632

Query: 452 GISKKADAALKAFHDDRTLCGPISKFKL-MLLYSSLLRTLTKCKRDFDAINVLEEMIFSG 510
               + D A   F + ++      + +L +++YSSL+    K  R  +A  +LEE++  G
Sbjct: 633 AKIDRLDEAYMLFEEAKS-----KRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKG 687

Query: 511 IVPDVQTFSGLMYHFALQGDEKIVQKL--FSMVRQNGVEPDAYMFKVLIQAYCKY----- 563
           + P++ T++ L+   AL   E+I + L  F  +++    P+   + +LI   CK      
Sbjct: 688 LTPNLYTWNSLLD--ALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNK 745

Query: 564 -------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLA 609
                  +    + P   +   +   L K G   EA A+ +R +    VP  A
Sbjct: 746 AFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSA 798

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1

 Score = 82.8 bits (203), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 108/513 (21%), Positives = 212/513 (41%), Gaps = 37/513 (7%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           ++T   R + + ++A  + E +K+   FS+++ T +AL  V  KS R  E   ++ ++  
Sbjct: 285 LITCCKRGSLHQEAA-QVFEEMKA-AGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVL 342

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
           + F    V + +L+  Y+  G L+  +   N+  ++       +Y  ++S + + GK   
Sbjct: 343 NGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVES 402

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKR--TSKQYLIL 248
           A+  F ++ + G  PN  T+   I+   N GK    +++F  + +  +     +   L+ 
Sbjct: 403 AMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLA 462

Query: 249 VEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREML---- 303
           V G  G++   E   +  EM+  G  P R      +      G  + A    R ML    
Sbjct: 463 VFGQNGMD--SEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGV 520

Query: 304 -PDKRIKNV--------RYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLD 354
            PD    N           +E       +  D       + Y   L  + + K +   + 
Sbjct: 521 TPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIG-LMH 579

Query: 355 EWSPEVVSLLADAKFVW--TTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKM 412
             + EV S + + + V   T  LVC         E A+        + G++ D+  L  M
Sbjct: 580 SLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSEL----KERGFSPDITTLNSM 635

Query: 413 LTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCG 472
           ++I  R   V   + ++  ++  G     +T   ++  Y  S+ AD   K+    R +  
Sbjct: 636 VSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLM--YMHSRSADFG-KSEEILREILA 692

Query: 473 PISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEK 532
              K  + + Y++++    +  R  DA  +  EM  SGIVPDV T++  +  +A    + 
Sbjct: 693 KGIKPDI-ISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGSYAA---DS 748

Query: 533 IVQKLFSMVR---QNGVEPDAYMFKVLIQAYCK 562
           + ++   +VR   ++G  P+   +  ++  YCK
Sbjct: 749 MFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCK 781

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1

 Score = 82.8 bits (203), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 108/548 (19%), Positives = 218/548 (39%), Gaps = 76/548 (13%)

Query: 75  ALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFL 134
           +LRS P+  +AL +       PNFS   +    +   L +S    ++K ++ D+ SS+  
Sbjct: 56  SLRSQPDDSAALRLFNLASKKPNFSPEPALYEEILLRLGRSGSFDDMKKILEDMKSSRCE 115

Query: 135 NVSVNFMNLMQWYSTSGDLELVLST--W-----------NEYRQRAKLL----------- 170
             +  F+ L++ Y+     + +LS   W           + Y +   LL           
Sbjct: 116 MGTSTFLILIESYAQFELQDEILSVVDWMIDEFGLKPDTHFYNRMLNLLVDGNSLKLVEI 175

Query: 171 ------------STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLV 218
                          ++N+++    +  +   A+     +   G +P+ +T+T +++  +
Sbjct: 176 SHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYI 235

Query: 219 NLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRD-DGKFPGR 277
             G LD AL +   +       ++    ++V GF    R ++A + + EM + DG FP +
Sbjct: 236 EEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQ 295

Query: 278 -AMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGV---- 332
                 +  + + G ++ A E +  ML           ++G D D    +   SG+    
Sbjct: 296 YTFNTLVNGLCKAGHVKHAIEIMDVML-----------QEGYDPDVYTYNSVISGLCKLG 344

Query: 333 RIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRL------------VC--- 377
            +   V++   +  +  +     ++  + +L  + +    T L            VC   
Sbjct: 345 EVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFN 404

Query: 378 ---KVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRS 434
              + L   ++   A   F  +  + G   D +    ++  L   G ++    ++ ++  
Sbjct: 405 SLIQGLCLTRNHRVAMELFEEMRSK-GCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMEL 463

Query: 435 DGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCK 494
            G      T   +ID +  + K   A + F D+  + G +S+  +   Y++L+  L K +
Sbjct: 464 SGCARSVITYNTLIDGFCKANKTREAEEIF-DEMEVHG-VSRNSVT--YNTLIDGLCKSR 519

Query: 495 RDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFK 554
           R  DA  ++++MI  G  PD  T++ L+ HF   GD K    +   +  NG EPD   + 
Sbjct: 520 RVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYG 579

Query: 555 VLIQAYCK 562
            LI   CK
Sbjct: 580 TLISGLCK 587

May be involved in female gametophyte development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q0WPZ6|PP158_ARATH Pentatricopeptide repeat-containing protein At2g17140 OS=Arabidopsis thaliana GN=At2g17140 PE=2 SV=1

 Score = 81.6 bits (200), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 116/523 (22%), Positives = 215/523 (41%), Gaps = 46/523 (8%)

Query: 60  SLLNDRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNH 119
            +L ++++   IV+   R   N DS   ++E ++       +  T ++  + L K  +  
Sbjct: 212 GVLPNKVIYNTIVSSFCREGRNDDSE-KMVEKMREE-GLVPDIVTFNSRISALCKEGKVL 269

Query: 120 ELKTLIGDISSSKFLNV----SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESY 175
           +   +  D+   ++L +    S+ +  +++ +   G LE   + +   R+   L S +SY
Sbjct: 270 DASRIFSDMELDEYLGLPRPNSITYNLMLKGFCKVGLLEDAKTLFESIRENDDLASLQSY 329

Query: 176 NIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPL 235
           NI +    + GK  EA    +Q+ D+G  P+  +Y ++++ L  LG L  A  +   +  
Sbjct: 330 NIWLQGLVRHGKFIEAETVLKQMTDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKR 389

Query: 236 MRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP-GRAMRVALERMQEMGFIQG 294
             +   +  Y  L+ G+  V + D AKSLL EM  +   P      + L  + +MG I  
Sbjct: 390 NGVCPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWKMGRISE 449

Query: 295 ANEFLREMLPDKRIKNVRYYEDGSD--------DDEDENDDNNSGVRIAYGVQLKPWLDP 346
           A E LR+M       N + Y  G D        D    + + +  + I  G+++      
Sbjct: 450 AEELLRKM-------NEKGY--GLDTVTCNIIVDGLCGSGELDKAIEIVKGMRVH---GS 497

Query: 347 KALANTLDEWSPEVVSLLADAK-----FVWTTRL--VCKVLRHFKSPETAWHFFCWVAYQ 399
            AL N  + +   V   L +         ++T L  +CK  R F   +  +        Q
Sbjct: 498 AALGNLGNSYIGLVDDSLIENNCLPDLITYSTLLNGLCKAGR-FAEAKNLFAEMMGEKLQ 556

Query: 400 PGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADA 459
           P    D  A    +    + G +    R++  +   G      T   +I   GI K    
Sbjct: 557 P----DSVAYNIFIHHFCKQGKISSAFRVLKDMEKKGCHKSLETYNSLILGLGI-KNQIF 611

Query: 460 ALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
            +    D+    G       +  Y++ ++ L + ++  DA N+L+EM+   I P+V +F 
Sbjct: 612 EIHGLMDEMKEKGISPN---ICTYNTAIQYLCEGEKVEDATNLLDEMMQKNIAPNVFSFK 668

Query: 520 GLMYHFALQGDEKIVQKLF-SMVRQNGVEPDAY--MFKVLIQA 559
            L+  F    D  + Q++F + V   G +   Y  MF  L+ A
Sbjct: 669 YLIEAFCKVPDFDMAQEVFETAVSICGQKEGLYSLMFNELLAA 711

Arabidopsis thaliana (taxid: 3702)

>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1

 Score = 79.0 bits (193), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 111/477 (23%), Positives = 181/477 (37%), Gaps = 116/477 (24%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAI-PNSRTYTVMIEHLVNLGKLDSALEVFSA 232
           +YN+++S Y K G+   A+     V+D  ++ P+  TY  ++  L + GKL  A+EV   
Sbjct: 174 TYNVMISGYCKAGEINNAL----SVLDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDR 229

Query: 233 LPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGF 291
           +           Y IL+E          A  LL+EMRD G  P      V +  + + G 
Sbjct: 230 MLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGR 289

Query: 292 IQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKP------WLD 345
           +  A +FL +M       NV                      I + + L+       W+D
Sbjct: 290 LDEAIKFLNDMPSSGCQPNV----------------------ITHNIILRSMCSTGRWMD 327

Query: 346 P-KALANTLDE-WSPEVVSLLADAKFVWTTRLVCKVL-------RHFKSPETA-----WH 391
             K LA+ L + +SP VV+      F+    L+ + +       +H   P +       H
Sbjct: 328 AEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLH 387

Query: 392 FFC-------WVAY-----QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRL 439
            FC        + Y       G   D+     MLT L + G VE    ++ +L S G   
Sbjct: 388 GFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKG--- 444

Query: 440 PFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDA 499
                                          C P+     ++ Y++++  L K  +   A
Sbjct: 445 -------------------------------CSPV-----LITYNTVIDGLAKAGKTGKA 468

Query: 500 INVLEEMIFSGIVPDVQTFSGLMYHFALQG--DEKIVQKLFSMVRQNGVEPDAYMFKVLI 557
           I +L+EM    + PD  T+S L+   + +G  DE I  K F    + G+ P+A  F  ++
Sbjct: 469 IKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAI--KFFHEFERMGIRPNAVTFNSIM 526

Query: 558 QAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRKEA-AAVEERCEK 601
              CK            ++ N    P+  +  +L + L  EG  KEA   + E C K
Sbjct: 527 LGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEALELLNELCNK 583

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1

 Score = 78.2 bits (191), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 107/444 (24%), Positives = 184/444 (41%), Gaps = 40/444 (9%)

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           + +L+  Y    DL+     +NE   +    +  +Y  ++       +  EA++ F ++ 
Sbjct: 256 YTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMK 315

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
           D+   P  RTYTV+I+ L    +   AL +   +    IK     Y +L++      +F+
Sbjct: 316 DDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFE 375

Query: 260 EAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGS 318
           +A+ LL +M + G  P      AL     + G I+ A + +  M   K   N R Y    
Sbjct: 376 KARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTY---- 431

Query: 319 DDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLD--------------EWSPEVVSLL 364
             +E       S V  A GV L   L+ K L + +               + +  ++SL+
Sbjct: 432 --NELIKGYCKSNVHKAMGV-LNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLM 488

Query: 365 ADAKFV---WTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGH 421
            D   V   WT   +   L   K  E A   F  +  Q G   +V     ++    + G 
Sbjct: 489 NDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLE-QKGVNPNVVMYTALIDGYCKAGK 547

Query: 422 VELVDRLIAKLRSDGMRLPFS-TIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLM 480
           V+    ++ K+ S    LP S T   +I  +G+   AD  LK   +   L   + K  L 
Sbjct: 548 VDEAHLMLEKMLSKNC-LPNSLTFNALI--HGLC--ADGKLK---EATLLEEKMVKIGLQ 599

Query: 481 LLYSS---LLRTLTKCKRDFD-AINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQK 536
              S+   L+  L K   DFD A +  ++M+ SG  PD  T++  +  +  +G     + 
Sbjct: 600 PTVSTDTILIHRLLK-DGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAED 658

Query: 537 LFSMVRQNGVEPDAYMFKVLIQAY 560
           + + +R+NGV PD + +  LI+ Y
Sbjct: 659 MMAKMRENGVSPDLFTYSSLIKGY 682

Arabidopsis thaliana (taxid: 3702)

>sp|O64624|PP163_ARATH Pentatricopeptide repeat-containing protein At2g18940 OS=Arabidopsis thaliana GN=At2g18940 PE=2 SV=1

 Score = 77.4 bits (189), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 100/497 (20%), Positives = 197/497 (39%), Gaps = 69/497 (13%)

Query: 86  LSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQ 145
           L +++ ++S      ++ T   + +  A+     E K    ++ S  +   +V +  L+Q
Sbjct: 266 LGVLDEMRSK-GLKFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNALLQ 324

Query: 146 WYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIP 205
            +  +G     LS   E  + +    + +YN +++ Y + G + EA      +  +G +P
Sbjct: 325 VFGKAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMMTKKGVMP 384

Query: 206 NSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLL 265
           N+ TYT +I+     GK D AL++F ++        +  Y  ++       R +E   +L
Sbjct: 385 NAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKML 444

Query: 266 NEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREML-----PDKRIKNVRYYEDGSD 319
            +M+ +G  P RA     L      G  +  N   REM      PD+   N      G  
Sbjct: 445 CDMKSNGCSPNRATWNTMLALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRC 504

Query: 320 DDE-DENDDNNSGVRIAYGVQLKPWLDPKALANTL---DEW-SPEVVSLLADAKFVWTTR 374
             E D +       R  +   +  +    AL N L    +W S E V  ++D K      
Sbjct: 505 GSEVDASKMYGEMTRAGFNACVTTY---NALLNALARKGDWRSGENV--ISDMKS----- 554

Query: 375 LVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRS 434
                 + FK  ET++                     ML   A+ G+   ++R+  +++ 
Sbjct: 555 ------KGFKPTETSYSL-------------------MLQCYAKGGNYLGIERIENRIKE 589

Query: 435 DGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKL---------MLLYSS 485
             +   +  +R +             L A    R L G    F L         M++++S
Sbjct: 590 GQIFPSWMLLRTL-------------LLANFKCRALAGSERAFTLFKKHGYKPDMVIFNS 636

Query: 486 LLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNG 545
           +L   T+      A  +LE +   G+ PD+ T++ LM  +  +G+    +++   + ++ 
Sbjct: 637 MLSIFTRNNMYDQAEGILESIREDGLSPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQ 696

Query: 546 VEPDAYMFKVLIQAYCK 562
           ++PD   +  +I+ +C+
Sbjct: 697 LKPDLVSYNTVIKGFCR 713

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVQ5|PP432_ARATH Pentatricopeptide repeat-containing protein At5g55840 OS=Arabidopsis thaliana GN=At5g55840 PE=2 SV=2

 Score = 77.0 bits (188), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 91/466 (19%), Positives = 171/466 (36%), Gaps = 77/466 (16%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YN +++ ++  GK   A +   +++  G  PN  T+  +I+  ++ G    AL++F  +
Sbjct: 300 TYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMM 359

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFI 292
               +  +   Y +L++G      FD A+     M+ +G   GR     + + + + GF+
Sbjct: 360 EAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFL 419

Query: 293 QGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANT 352
             A   L EM            +DG D D                               
Sbjct: 420 DEAVVLLNEM-----------SKDGIDPD------------------------------- 437

Query: 353 LDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPE-----TAWHFFCWVA--------YQ 399
           +  +S  +       +F     +VC++ R   SP      T  +  C +         Y+
Sbjct: 438 IVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYE 497

Query: 400 P----GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISK 455
                G+T D +    ++T L + G V   +  +  + SDG+     +   +I+ YG S 
Sbjct: 498 AMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSG 557

Query: 456 KADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDV 515
           +   A   F D+ T  G    F     Y SLL+ L K     +A   L+ +       D 
Sbjct: 558 EGLKAFSVF-DEMTKVGHHPTF---FTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDT 613

Query: 516 QTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------- 562
             ++ L+      G+      LF  + Q  + PD+Y +  LI   C+             
Sbjct: 614 VMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAILFAKE 673

Query: 563 YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSL 608
             +  N++P+          ++K G+ K      E+ + +   P +
Sbjct: 674 AEARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDI 719

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	638
255585152	652	pentatricopeptide repeat-containing prot	0.965	0.944	0.689	0.0
356540722	658	PREDICTED: pentatricopeptide repeat-cont	0.982	0.952	0.584	0.0
225430876	660	PREDICTED: pentatricopeptide repeat-cont	0.960	0.928	0.621	0.0
297735223	636	unnamed protein product [Vitis vinifera]	0.926	0.929	0.604	0.0
357483203	659	Pentatricopeptide repeat-containing prot	0.968	0.937	0.574	0.0
186532821	661	pentatricopeptide repeat-containing prot	0.968	0.934	0.581	0.0
297797729	661	hypothetical protein ARALYDRAFT_920064 [	0.998	0.963	0.563	0.0
224133926	517	predicted protein [Populus trichocarpa]	0.766	0.945	0.654	0.0
308081032	629	hypothetical protein [Zea mays] gi|23801	0.924	0.937	0.437	1e-138
242051953	652	hypothetical protein SORBIDRAFT_03g00472	0.918	0.898	0.436	1e-133

>gi|255585152|ref|XP_002533281.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223526906|gb|EEF29113.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis]

 Score =  888 bits (2294), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/631 (68%), Positives = 516/631 (81%), Gaps = 15/631 (2%)

Query: 20  QTRSFVRAPFTNKLALYLRRAQLIDSIRLAVRSNSSNSLSSLLND-RLLDPFIVTHALRS 78
           Q R FVR PF NKL  YLRRA+LIDSIRLA+RSNS NS+++ LN+ R+LDPF++TH +RS
Sbjct: 19  QIRFFVRDPFPNKLTHYLRRAELIDSIRLALRSNSPNSITTFLNNTRILDPFVITHTIRS 78

Query: 79  APNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSV 138
           AP+ADSAL ++E LK+ P+F+HNQST+HALATVLA+S ++ ELK+L+ +I+  K+ NV V
Sbjct: 79  APSADSALFLIEILKNIPHFTHNQSTIHALATVLARSCKSFELKSLLNEINVGKYCNVRV 138

Query: 139 NFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQV 198
           +FMNLMQWY+  GDL+ VL  W+EYR   K + TESYNI+MS++AK G + +AVE F ++
Sbjct: 139 SFMNLMQWYAAVGDLDAVLDVWDEYRHSDKRVCTESYNIIMSLFAKMGNDAKAVEIFYRM 198

Query: 199 IDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERF 258
           IDEGAIPNSRTYTVMIEHLV LGKLDSA+EVFS LPLMRIKRT KQY +LV+GFVGVERF
Sbjct: 199 IDEGAIPNSRTYTVMIEHLVKLGKLDSAIEVFSVLPLMRIKRTLKQYSVLVDGFVGVERF 258

Query: 259 DEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGS 318
           DE K L+NEM+ DGKFPGRAM  AL+RMQE GF++   EF++EM PD+RIK++    DGS
Sbjct: 259 DEVKKLVNEMKVDGKFPGRAMHSALQRMQEAGFVEETKEFVKEMFPDERIKSIGSCSDGS 318

Query: 319 DDDED--ENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLV 376
           DDDED  EN +N         V+LKPWLDPKALAN L +WSPEVVS+L DAKFVWTTRLV
Sbjct: 319 DDDEDDYENVNNGDVHTDTSEVRLKPWLDPKALANALSQWSPEVVSMLEDAKFVWTTRLV 378

Query: 377 CKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDG 436
           CKVLR+F SPETAW+FFCWVAYQPG+THDVY +++M+T+LARHG VELVD+LI K+R +G
Sbjct: 379 CKVLRNFSSPETAWYFFCWVAYQPGFTHDVYTVQRMMTLLARHGKVELVDKLITKIRIEG 438

Query: 437 MRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRD 496
           MRLPFSTIRLIIDFYGISK ADAALK F DDR LCG I+KF LMLLYSSLLRTLTKC R+
Sbjct: 439 MRLPFSTIRLIIDFYGISKNADAALKVFRDDRPLCGSITKFNLMLLYSSLLRTLTKCNRN 498

Query: 497 FDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVL 556
            DAI+VLEEMI  GI PD+QT+SGLMYHFALQGD K  QKLF++VRQ+GVEPDAYMFKVL
Sbjct: 499 SDAIDVLEEMILCGISPDIQTYSGLMYHFALQGDIKTAQKLFTIVRQSGVEPDAYMFKVL 558

Query: 557 IQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKIND 604
           I AYCK             + NSNLMPD ATK+ L KSLWKEG+RKEAA VEE CE+ N+
Sbjct: 559 ILAYCKCERAALAWRVFEDMKNSNLMPDTATKDFLIKSLWKEGKRKEAAIVEESCEESNN 618

Query: 605 VPSLALRGHIWAVSSADLTRVHSIYRNSITS 635
           V  L LRGHIW VSSADLTRV++IY N+  S
Sbjct: 619 VLPLVLRGHIWTVSSADLTRVYNIYSNTFKS 649

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356540722|ref|XP_003538834.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66631-like [Glycine max]

 Score =  782 bits (2020), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/648 (58%), Positives = 492/648 (75%), Gaps = 21/648 (3%)

Query: 6   FLPAVILSKAFTQLQTRSFVR--APFTNKLALYLRRAQLIDSIRLAVRSNSSN-SLSSLL 62
           F  A +L+   +++Q RS+ R   PF  K++ YL RA+LIDSIRL +RSN+ N SL SL+
Sbjct: 9   FREANLLNGLTSRVQARSYARRREPFPTKVSHYLHRAKLIDSIRLTLRSNTPNPSLPSLI 68

Query: 63  NDRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELK 122
           N RL+D F+ THALRSAP+ADSALS + AL+ + +FSH   TLH+LATVLAKS R+ ELK
Sbjct: 69  NHRLMDSFVATHALRSAPSADSALSFVRALEKSSHFSHTHHTLHSLATVLAKSGRSSELK 128

Query: 123 TLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVY 182
           +L+ DI +++F +V ++FMNLMQW++   DL+ VL  W +Y      L TESYNIVM++Y
Sbjct: 129 SLVDDIRANRFGSVQISFMNLMQWHAAVRDLDTVLQVWEQYALENDHLCTESYNIVMTLY 188

Query: 183 AKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTS 242
           A+ GK+FEAV  FR++IDEG++PN R+YTV+IEHLV   KL  ALEVF+ LP MRIKRT 
Sbjct: 189 AQMGKDFEAVRVFRRMIDEGSLPNCRSYTVIIEHLVKSRKLSEALEVFNLLPSMRIKRTL 248

Query: 243 KQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREM 302
           +QY +L+EGFVG ++FDE + L+ EM+ DG  P R M + L++M+E G ++G  + LR +
Sbjct: 249 RQYSVLLEGFVGSKQFDEVRILVEEMQVDGILPSRGMGLLLQQMKEEGILEGKEQLLRGI 308

Query: 303 LPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAY------GVQLKPWLDPKALANTLDEW 356
           LPD+ I++V Y  D  D+DE+EN+D +  +  A       G+ LKPW+DP+AL + L  W
Sbjct: 309 LPDETIRSVSYSIDSGDEDENENEDQDENISDAGQCNHVDGIHLKPWMDPRALVSALRNW 368

Query: 357 SPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTIL 416
           SP+ V+ L  A FVWTTRLVCK+LR+FK+PE AW FFCW A Q G+THD+Y ++++ T+L
Sbjct: 369 SPDEVAALESANFVWTTRLVCKMLRNFKTPEAAWSFFCWAANQRGFTHDIYTVQRITTLL 428

Query: 417 ARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISK 476
           ARHG  +LVDRLI+K+R + MRLPFSTIR+IIDFYGISKKADAALK F+DDR LCGPIS 
Sbjct: 429 ARHGRTDLVDRLISKIRMERMRLPFSTIRMIIDFYGISKKADAALKVFNDDRILCGPISN 488

Query: 477 FKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQK 536
             LMLLYSSLLRTLTKC R+ DA+++L++MI +GI PD+QTFSGLMY+F+  GD K VQK
Sbjct: 489 VNLMLLYSSLLRTLTKCGRNSDALDMLDDMILNGICPDIQTFSGLMYYFSQLGDIKTVQK 548

Query: 537 LFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLW 584
           LF+MVRQ+G+EPDAY+FK LIQ YCK             + NS L+PD+ATKELL KSLW
Sbjct: 549 LFAMVRQSGLEPDAYLFKALIQGYCKSERAALAWRLFEDMKNSGLVPDSATKELLVKSLW 608

Query: 585 KEGRRKEAAAVEERCEKINDVPSLALRGHIWAVSSADLTRVHSIYRNS 632
           KEGRR+EAAAVEE  E+IN V  LAL+GH+W VSSADLTRV++IY NS
Sbjct: 609 KEGRRREAAAVEESYEEINTVLPLALQGHVWTVSSADLTRVYNIYSNS 656

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225430876|ref|XP_002269506.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66631-like [Vitis vinifera]

 Score =  781 bits (2018), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/631 (62%), Positives = 491/631 (77%), Gaps = 18/631 (2%)

Query: 20  QTRSFVRAPFTNKLALYLRRAQLIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTHALRSA 79
           QTR F   PF+ K++LYL RA+LIDSIRL +RSN+  SL  LLND  +D F+V +AL+SA
Sbjct: 19  QTRYFTHNPFSGKISLYLHRARLIDSIRLILRSNAPRSLIPLLNDPTVDSFVVANALQSA 78

Query: 80  PNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVN 139
           P+ DSALS++E LK+ P+F H Q+T+ ALA +LAKSQR+ ELK+L+ DI++ KF NV ++
Sbjct: 79  PSPDSALSLLEILKTIPHFCHTQATIRALAKILAKSQRSAELKSLVDDINAGKFWNVRIS 138

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           FM LM+W++ +GDLE VL  WN YR   K +S E+YNIVM +Y + GK+ EA++ F ++I
Sbjct: 139 FMELMKWHAAAGDLESVLHAWNRYRVSGKQVSIEAYNIVMRLYVQMGKDSEAMQIFHKII 198

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
            EGAIPNSRTYTV++EHL N GKLDSA++VF+ LPLMRI+RT +QY ILVE F  + RFD
Sbjct: 199 SEGAIPNSRTYTVVLEHLANSGKLDSAIKVFNILPLMRIRRTLRQYSILVEEFTSINRFD 258

Query: 260 EAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSD 319
             K+LL+EM+ DG  PGRAM+++L+RMQE GF+   +EFLR MLPD+RIKNV +  D SD
Sbjct: 259 VVKALLDEMQIDGILPGRAMQLSLQRMQEAGFVHETDEFLRGMLPDERIKNVGFCVDSSD 318

Query: 320 DDEDEND--DNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVC 377
           DD+DEN+   +++GV    GVQLKPWLDP+ALAN L+ W P  V  L +AKF+WTTRLVC
Sbjct: 319 DDDDENNHSSDDAGVD---GVQLKPWLDPRALANALNNWDPNEVLALEEAKFIWTTRLVC 375

Query: 378 KVLRHFKSPETAWHFFCWVAYQP-GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDG 436
           K+LR+F SPETAW FFCWVAYQP G+ H++Y +++M+T+LARHGHVELV++L+ K+R + 
Sbjct: 376 KILRNFNSPETAWKFFCWVAYQPGGFNHNIYTVQRMMTLLARHGHVELVEKLLLKIRREE 435

Query: 437 MRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRD 496
           +RLP STIRLIIDFYGIS+ ADAALK FHD  +LCGP+SK  LMLLYSSLLRTLTKC R 
Sbjct: 436 IRLPVSTIRLIIDFYGISRNADAALKVFHDAESLCGPMSKLYLMLLYSSLLRTLTKCGRS 495

Query: 497 FDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVL 556
            DA++VLE+M   GI PDV TFSGLMYHFAL+GD K VQKLF MVRQ+GVEPDAYMFKVL
Sbjct: 496 ADALDVLEQMFLGGICPDVPTFSGLMYHFALEGDFKTVQKLFMMVRQSGVEPDAYMFKVL 555

Query: 557 IQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKIND 604
           I  YCK             + + NLMPDAATK LL K LWKEGRR+EAA+VEERCE+IN 
Sbjct: 556 IHGYCKCERSALALRVFEDMRSLNLMPDAATKNLLVKCLWKEGRRREAASVEERCEEINY 615

Query: 605 VPSLALRGHIWAVSSADLTRVHSIYRNSITS 635
               ALRGH+W +SSADL RV+ IY NS  +
Sbjct: 616 GLPFALRGHMWTMSSADLKRVYDIYSNSFAA 646

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735223|emb|CBI17585.3| unnamed protein product [Vitis vinifera]

 Score =  769 bits (1985), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/629 (60%), Positives = 473/629 (75%), Gaps = 38/629 (6%)

Query: 20  QTRSFVRAPFTNKLALYLRRAQLIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTHALRSA 79
           QTR F   PF+ K++LYL RA+LIDSIRL +RSN+  SL  LLND  +D F+V +AL+SA
Sbjct: 19  QTRYFTHNPFSGKISLYLHRARLIDSIRLILRSNAPRSLIPLLNDPTVDSFVVANALQSA 78

Query: 80  PNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVN 139
           P+ DSALS++E LK+ P+F H Q+T+ ALA +LAKSQR+ ELK+L+ DI++ KF NV ++
Sbjct: 79  PSPDSALSLLEILKTIPHFCHTQATIRALAKILAKSQRSAELKSLVDDINAGKFWNVRIS 138

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           FM LM+W++ +GDLE VL  WN YR   K +S E+YNIVM +Y + GK+ EA++ F ++I
Sbjct: 139 FMELMKWHAAAGDLESVLHAWNRYRVSGKQVSIEAYNIVMRLYVQMGKDSEAMQIFHKII 198

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
            EGAIPNSRTYTV++EHL N GKLDSA++VF+ LPLMRI+RT +QY ILVE F  + RFD
Sbjct: 199 SEGAIPNSRTYTVVLEHLANSGKLDSAIKVFNILPLMRIRRTLRQYSILVEEFTSINRFD 258

Query: 260 EAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSD 319
             K+LL+EM+ DG  PGRAM+++L+RMQE GF+   +EFLR MLPD+RIKNV        
Sbjct: 259 VVKALLDEMQIDGILPGRAMQLSLQRMQEAGFVHETDEFLRGMLPDERIKNV-------- 310

Query: 320 DDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKV 379
                            G  LKPWLDP+ALAN L+ W P  V  L +AKF+WTTRLVCK+
Sbjct: 311 -----------------GFCLKPWLDPRALANALNNWDPNEVLALEEAKFIWTTRLVCKI 353

Query: 380 LRHFKSPETAWHFFCWVAYQP-GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMR 438
           LR+F SPETAW FFCWVAYQP G+ H++Y +++M+T+LARHGHVELV++L+ K+R + +R
Sbjct: 354 LRNFNSPETAWKFFCWVAYQPGGFNHNIYTVQRMMTLLARHGHVELVEKLLLKIRREEIR 413

Query: 439 LPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFD 498
           LP STIRLIIDFYGIS+ ADAALK FHD  +LCGP+SK  LMLLYSSLLRTLTKC R  D
Sbjct: 414 LPVSTIRLIIDFYGISRNADAALKVFHDAESLCGPMSKLYLMLLYSSLLRTLTKCGRSAD 473

Query: 499 AINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQ 558
           A++VLE+M   GI PDV TFSGLMYHFAL+GD K VQKLF MVRQ+GVEPDAYMFKVLI 
Sbjct: 474 ALDVLEQMFLGGICPDVPTFSGLMYHFALEGDFKTVQKLFMMVRQSGVEPDAYMFKVLIH 533

Query: 559 AYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVP 606
            YCK             + + NLMPDAATK LL K LWKEGRR+EAA+VEERCE+IN   
Sbjct: 534 GYCKCERSALALRVFEDMRSLNLMPDAATKNLLVKCLWKEGRRREAASVEERCEEINYGL 593

Query: 607 SLALRGHIWAVSSADLTRVHSIYRNSITS 635
             ALRGH+W +SSADL RV+ IY NS  +
Sbjct: 594 PFALRGHMWTMSSADLKRVYDIYSNSFAA 622

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357483203|ref|XP_003611888.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355513223|gb|AES94846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]

 Score =  762 bits (1968), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/639 (57%), Positives = 487/639 (76%), Gaps = 21/639 (3%)

Query: 18  QLQTRSFVRA--PFTNKLALYLRRAQLIDSIRLAVRSNSSNS-LSSLLNDRLLDPFIVTH 74
           ++Q R + R   PF  K+  YL RA+LIDSIRL++RSN+ NS LS+L+N RL D F++TH
Sbjct: 18  RIQIRFYTRRRDPFPTKITHYLNRAKLIDSIRLSLRSNNPNSTLSTLINHRLFDSFVLTH 77

Query: 75  ALRSAPNADSALSIMEALKS--NPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSK 132
           ALRSAP ADSALS++  +++  + NFSH Q+TLHALATVLAKS +  ELK+LI DI S +
Sbjct: 78  ALRSAPCADSALSLIHTIENTKSSNFSHTQNTLHALATVLAKSGKLVELKSLIDDIESKR 137

Query: 133 FLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAV 192
           F NV ++FMNLMQWY+ + D++ V+  W++YR  ++++ TESYNIVM++Y + GK+ EAV
Sbjct: 138 FGNVKISFMNLMQWYAAAKDIDSVVRVWDQYRVESRIVCTESYNIVMTLYVEMGKDSEAV 197

Query: 193 ETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGF 252
             F +++D+G++PN R+Y+++IEHLV   K   A+EVF+ LPLMRIKRT KQY +L+EG 
Sbjct: 198 GIFCKMVDDGSVPNCRSYSIIIEHLVKCRKFLEAIEVFNLLPLMRIKRTLKQYSVLIEGL 257

Query: 253 VGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVR 312
           VG + FDE   L+NEM+ DG  P R + + L+++++ GF++  +E    + PD+RIK+V 
Sbjct: 258 VGSKMFDEVGVLVNEMQVDGILPSRTVSLLLQQVKDEGFLKDVDELFEGICPDERIKSVS 317

Query: 313 YYEDGSDDDEDE----NDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAK 368
           +  D SD+DE+E    N++  S      G++LKPWLDP++LA+ L  WSP+ VS L  A 
Sbjct: 318 FSIDSSDEDENEYKGENENEVSQCDHVDGIRLKPWLDPRSLASALQNWSPDEVSALEGAN 377

Query: 369 FVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRL 428
           FVWTTRLVCK+LR F+SP+TAW+FFCWVA +PG+TH++Y +++++T+LARHG  ELVDRL
Sbjct: 378 FVWTTRLVCKILRSFRSPDTAWNFFCWVADRPGFTHNIYTVQRIMTLLARHGRTELVDRL 437

Query: 429 IAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLR 488
           I K+R +GMRLPFSTIRLIIDFYGISK ADAALK F+DD+ LCG ISK  LMLLYSSLLR
Sbjct: 438 ILKIRIEGMRLPFSTIRLIIDFYGISKNADAALKVFNDDQILCGSISKVNLMLLYSSLLR 497

Query: 489 TLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEP 548
           TLTKC R+ + +++L+EMI +GI PD+QTFSGLM +F+  GD K VQKLFSMVRQ+G EP
Sbjct: 498 TLTKCGRNSNTLDMLDEMILNGICPDIQTFSGLMQYFSQLGDIKTVQKLFSMVRQSGFEP 557

Query: 549 DAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVE 596
           DAY++KVLI+ YCK             + NS  MPD+ATKELL KSLWKEGRR+EAAAVE
Sbjct: 558 DAYLYKVLIEGYCKSTRAALAWRLFEDMKNSGSMPDSATKELLVKSLWKEGRRREAAAVE 617

Query: 597 ERCEKINDVPSLALRGHIWAVSSADLTRVHSIYRNSITS 635
           E CE++N V  L L GH+W VSSADLTRV++IY NS  S
Sbjct: 618 ESCEEVNVVLPLGLPGHVWTVSSADLTRVYNIYSNSFVS 656

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186532821|ref|NP_001119513.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|223635653|sp|B3H4P1.1|PP450_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g66631 gi|332010859|gb|AED98242.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]

 Score =  741 bits (1913), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/643 (58%), Positives = 474/643 (73%), Gaps = 25/643 (3%)

Query: 20  QTRSFVRAPFTNKLALYLRRAQLIDSIRLAVRS--NSSNSLSSLLNDRLLDPFIVTHALR 77
           Q R F R PF NK+  YL RA LIDSIRL++RS   S  +L+SLLN RLLD F+V +ALR
Sbjct: 20  QIRFFSRDPFPNKVQHYLYRANLIDSIRLSLRSPTTSDRTLASLLNHRLLDSFVVKNALR 79

Query: 78  SAPNADSALSIMEALK-SNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNV 136
           S+P+  SA SI + L   +P FS    TLHA ATVLAK QR+ EL +LIG +++ KF NV
Sbjct: 80  SSPSVSSAWSIFKTLSHKSPRFSFETETLHAFATVLAKFQRSSELNSLIGVVNAWKFRNV 139

Query: 137 SVNFMNLMQWYSTSGDLELVLSTWNEYR--QRAKLLSTESYNIVMSVYAKTGKNFEAVET 194
             +FMNL+  Y+T+GD + VL TW+EYR     K   TESYNIVM VY   GK+ EAV+T
Sbjct: 140 HFSFMNLLNLYATAGDFDSVLKTWDEYRCSGEEKKGCTESYNIVMQVYMTLGKDSEAVQT 199

Query: 195 FRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVG 254
           F Q+I+EG IPNSRT+T+MIEHLV LG LD+A+++F  LPLMRI RT K Y +LVE FV 
Sbjct: 200 FDQIINEGGIPNSRTFTIMIEHLVKLGNLDAAMKIFETLPLMRITRTLKHYSVLVEAFVD 259

Query: 255 VERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYY 314
            +RFDE K+L+ EM+ DGKFP R M   L+RM+E GF     EFLREMLPD+RIK++  Y
Sbjct: 260 AQRFDEVKTLIAEMKSDGKFPSRRMLEPLKRMREAGFEHETEEFLREMLPDERIKDISMY 319

Query: 315 E-DGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTT 373
             D   D EDE D+    V  A  V+LKPWLDPKALA +L +WS + V+ L +A FVWT 
Sbjct: 320 SMDNPSDSEDEGDEYKDDVNEA-QVKLKPWLDPKALATSLKKWSSDAVTALEEANFVWTN 378

Query: 374 RLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLR 433
            LVCK+LR+F++PETAW FFCWVA QPG+THD Y +E+M+ +LAR+G VELVD+LI+K+R
Sbjct: 379 LLVCKMLRNFRAPETAWSFFCWVAIQPGFTHDAYTIERMMAMLARNGQVELVDKLISKVR 438

Query: 434 SDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKC 493
            +G++LPFSTIRLIID YGISKK +AA+K F++DRTLCG IS F LMLLYSSLLRTLTKC
Sbjct: 439 IEGIKLPFSTIRLIIDLYGISKKPEAAIKVFNEDRTLCGSISDFNLMLLYSSLLRTLTKC 498

Query: 494 KRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMF 553
           KR+ +A+  LE+M+ +G+ PD+QTFSGLMYHFALQG+ + V++LFSMVRQ G+EPD YM 
Sbjct: 499 KRNAEALETLEDMMLTGVSPDIQTFSGLMYHFALQGEIQTVERLFSMVRQIGLEPDPYML 558

Query: 554 KVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEK 601
           K+L+QAYC+             + +SNLMPD  TKELL KSLW+E +RKEAAAVEE  E+
Sbjct: 559 KLLVQAYCRCERSVLAYRVFQDMKDSNLMPDRETKELLVKSLWREEKRKEAAAVEESYEE 618

Query: 602 IND------VPSLALRGHIWAVSSADLTRVHSIYRNSITSIVT 638
            ND      V  LAL+GH+W +SS D++RV+++YR+ +    T
Sbjct: 619 ENDNKNSSNVLRLALKGHVWTISSTDISRVYNLYRDCVLKTST 661

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297797729|ref|XP_002866749.1| hypothetical protein ARALYDRAFT_920064 [Arabidopsis lyrata subsp. lyrata] gi|297312584|gb|EFH43008.1| hypothetical protein ARALYDRAFT_920064 [Arabidopsis lyrata subsp. lyrata]

 Score =  737 bits (1903), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/662 (56%), Positives = 476/662 (71%), Gaps = 25/662 (3%)

Query: 1   MFSKRFLPAVILSKAFTQLQTRSFVRAPFTNKLALYLRRAQLIDSIRLAVRSNSSN--SL 58
           MFS  F   V    +    Q R F R PF NK+  YL RA LIDSIRL++RS +++  +L
Sbjct: 1   MFSLIFSNPVKPFNSVIIYQIRFFSRDPFPNKVQHYLYRANLIDSIRLSLRSTTTSDPTL 60

Query: 59  SSLLNDRLLDPFIVTHALRSAPNADSALSIMEALKSN-PNFSHNQSTLHALATVLAKSQR 117
            SLL+ RLLD F+V +ALRS+P+  SA SI + L+   P+FS    TLHA ATVLAK QR
Sbjct: 61  PSLLDHRLLDSFVVKNALRSSPSVASAWSIFKTLRGKKPHFSFETETLHAFATVLAKFQR 120

Query: 118 NHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRA--KLLSTESY 175
           + EL +LIG +++ KF  V  +FMNLM  Y+T+GD + VL TW+EYR     K   TESY
Sbjct: 121 SSELNSLIGLVNAGKFGQVHFSFMNLMNLYATAGDFDSVLKTWDEYRCSGEEKKGCTESY 180

Query: 176 NIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPL 235
           NIVM VY   GK+ EAV+TF Q+ ++G IPNSRT+T+MIEHLV LG LD+A++VF  LPL
Sbjct: 181 NIVMQVYMTLGKDSEAVQTFDQITNQGGIPNSRTFTIMIEHLVKLGNLDAAMKVFETLPL 240

Query: 236 MRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGA 295
           MRI RT K Y +LVE FV  +RF E K+LL EM+ DGKFP R M   L+ M+E GF Q  
Sbjct: 241 MRITRTLKHYSVLVEAFVNAQRFGEVKTLLAEMKADGKFPSRRMLEPLKLMREAGFEQET 300

Query: 296 NEFLREMLPDKRIKNVRYYE-DGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLD 354
            EFLREMLPD+RIK++  Y  D   D E+E D++N  V     V+LKPWLDPKALA +L 
Sbjct: 301 EEFLREMLPDERIKDISIYSMDNPSDSEEEGDEHNDNVNEG-QVKLKPWLDPKALATSLK 359

Query: 355 EWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLT 414
           +WS + V+ L +A FVWT  LVCK+LR+F+SPETAW FFCWVA QPG+THD Y +E+M+ 
Sbjct: 360 KWSSDAVTALEEANFVWTNLLVCKMLRNFRSPETAWSFFCWVAIQPGFTHDAYTIERMMA 419

Query: 415 ILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPI 474
           +LAR+G VELVD+LI+K+R +G++LPFSTIRLIID YGISKK DAA+K F  DRTLCG I
Sbjct: 420 MLARNGQVELVDKLISKVRMEGIKLPFSTIRLIIDLYGISKKPDAAIKVFRQDRTLCGSI 479

Query: 475 SKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIV 534
           S F LMLLYSSLLRTLTKCKR+ +A+  LE+MI +G+ PD+QTFSGLMYHFALQG+ + V
Sbjct: 480 SDFNLMLLYSSLLRTLTKCKRNAEALETLEDMILTGVSPDIQTFSGLMYHFALQGEIQTV 539

Query: 535 QKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKS 582
           ++LFSMVRQ G++PD YM K+L+QAYC+             + +SNLMPD  TKELL KS
Sbjct: 540 ERLFSMVRQIGLDPDPYMLKLLVQAYCRCERSVLAYRVFQDMKDSNLMPDKETKELLVKS 599

Query: 583 LWKEGRRKEAAAV------EERCEKINDVPSLALRGHIWAVSSADLTRVHSIYRNSITSI 636
           LW+E +RKEAAAV      E   +  ++V  LAL+GH+W +SS D++RV+++YR+ +   
Sbjct: 600 LWREEKRKEAAAVEESYEEENNNKNSSNVLRLALKGHVWTISSTDISRVYNLYRDCVLKT 659

Query: 637 VT 638
            T
Sbjct: 660 ST 661

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133926|ref|XP_002327713.1| predicted protein [Populus trichocarpa] gi|222836798|gb|EEE75191.1| predicted protein [Populus trichocarpa]

 Score =  685 bits (1767), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/510 (65%), Positives = 398/510 (78%), Gaps = 21/510 (4%)

Query: 144 MQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGA 203
           MQWY+ +GDLE VL  W +YR   K + TESYNIVM +YA+ G++ EAV  F ++I EGA
Sbjct: 1   MQWYAATGDLEAVLDVWKQYRNGDKRVCTESYNIVMGLYAQKGRDCEAVRVFYRMIHEGA 60

Query: 204 IPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKS 263
           IPNSRTYTVMIEHLVN GKLD A+E+FS LPLMRIKRT KQYL+LVEGFVG+ERFD  ++
Sbjct: 61  IPNSRTYTVMIEHLVNSGKLDPAIEIFSVLPLMRIKRTLKQYLVLVEGFVGLERFDGVRT 120

Query: 264 LLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDED 323
           LL+EMR DGKFPGRAMR AL+ +QE GF++   EFL+EM PD+RIK++    D S D + 
Sbjct: 121 LLDEMRADGKFPGRAMRKALQCLQEAGFVEETEEFLKEMFPDERIKSISNSGDISFDKDG 180

Query: 324 ENDDN-------NSGVRIA--YGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTR 374
           + D +       N G   A    V+LKPWLDP+ALA  L++WSP+VVS L DAKFVWTTR
Sbjct: 181 DEDGDEDEDEDENHGCAFADIQEVRLKPWLDPRALAKALNKWSPDVVSALEDAKFVWTTR 240

Query: 375 LVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRS 434
           LV KVLR+  SPETAW FFCWVAYQPG+TH VY +++M+T+LA+HG VELVD+LI K+RS
Sbjct: 241 LVWKVLRNINSPETAWDFFCWVAYQPGFTHCVYTVQRMMTLLAKHGKVELVDQLINKIRS 300

Query: 435 DGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCK 494
           +GMRLPFSTIRLIIDF GISK ADAALK F +DR LCGPI+K+ LMLLYSSL+RTLTKCK
Sbjct: 301 EGMRLPFSTIRLIIDFCGISKNADAALKVFREDRALCGPITKYNLMLLYSSLIRTLTKCK 360

Query: 495 RDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFK 554
           RD DAI+VLEEMI  GI PD+QTFSGLMYHFA QGD K VQKL ++VRQ+ VEPDAYM+K
Sbjct: 361 RDSDAIDVLEEMILCGICPDIQTFSGLMYHFASQGDIKTVQKLLTIVRQSDVEPDAYMYK 420

Query: 555 VLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKI 602
           VLIQAYCK             + NSNL+PDAATK+LL KSLWKEG+ KEAA VEE C+ I
Sbjct: 421 VLIQAYCKCDRAALAWRIFEDMKNSNLIPDAATKDLLVKSLWKEGKLKEAATVEESCDGI 480

Query: 603 NDVPSLALRGHIWAVSSADLTRVHSIYRNS 632
           N V  L   GH W VSSADL +++++Y NS
Sbjct: 481 NSVLPLKQHGHKWTVSSADLAKIYNLYSNS 510

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|308081032|ref|NP_001183205.1| hypothetical protein [Zea mays] gi|238010036|gb|ACR36053.1| unknown [Zea mays] gi|414876173|tpg|DAA53304.1| TPA: hypothetical protein ZEAMMB73_741646 [Zea mays]

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 276/631 (43%), Positives = 390/631 (61%), Gaps = 41/631 (6%)

Query: 27  APFTNKLALYLRRAQLIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTHALRSAPNADSAL 86
           AP TN++ALYLRRA+LIDS+R+ +RS+S +S  +L  D   DP +  HA+R+AP A  AL
Sbjct: 6   APATNRVALYLRRARLIDSLRVRLRSSSPSSPPALPPD---DPVVALHAIRAAPTASCAL 62

Query: 87  SIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQW 146
           S+  A+ S            ALA  L+      +L+  +            +  +     
Sbjct: 63  SLFRAIPSQ--PPPPLPLYQALAARLSSLAALSDLRAHLASFPLPAPPLARLRLL----- 115

Query: 147 YSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPN 206
            + +GD    L  +       +    E++N+V+ ++A+ G +  AVE FR+++ EGA+PN
Sbjct: 116 -AAAGDRASALEAFGSLPATPRR-PAEAHNVVIELHARGGDHDAAVEAFRRMVREGALPN 173

Query: 207 SRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLN 266
           +RTYTV+I HL + G +D ALEVF  LP +R++RT++QY +L E      RFD+ + L+ 
Sbjct: 174 ARTYTVVIAHLASAGFVDQALEVFRILPSLRVRRTTRQYNVLAEALASGGRFDQLRWLVR 233

Query: 267 EMRD-DGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRI---------KNVRYYED 316
           EM   DG  PG  MR A+  ++E G + G  +F+ E+ P+ RI         +     ED
Sbjct: 234 EMAAVDGVMPGPQMRAAIAALREAGHVDGTKDFVEELSPNARIGYAVDDVEGEGDGEEED 293

Query: 317 GSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLV 376
             D+DE E  D  +G +      LKPWLDP+ LA  LD W    V+ L  A  VWT RLV
Sbjct: 294 DDDEDEGEVKDRGNGEK----QTLKPWLDPRELARALDGWDSREVAELEGAGLVWTPRLV 349

Query: 377 CKVLRHFKSPETAWHFFCWVAYQPG-YTHDVYALEKMLTILARHGHVELVDRLIAKLRSD 435
           CK+LR FK  ETAW FFCWVA +PG + HD + + +M+ ILAR GHVELV+RL+AK+R+D
Sbjct: 350 CKLLRAFKKAETAWEFFCWVACRPGGFAHDRHTVARMMAILARTGHVELVERLLAKVRAD 409

Query: 436 GMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKR 495
           G+ LP +T+RL+IDFYG+SKKADAA++ F +  ++CGPIS   L LLYSSLLRT+TKC+R
Sbjct: 410 GILLPLATVRLVIDFYGLSKKADAAVRVFQEAESICGPISGPNLALLYSSLLRTMTKCRR 469

Query: 496 DFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKV 555
             DA+++LEEM+  G++PD+QTFSGLM H A  GD K V +L  +VRQ  ++PD YM+ V
Sbjct: 470 GPDAMDLLEEMMARGVLPDLQTFSGLMEHLAGAGDLKGVHRLLGLVRQCELQPDGYMYSV 529

Query: 556 LIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKIN 603
           L++AYCK             +  + + PDA TK LL KSLW+EG+ +EAA VEERC  + 
Sbjct: 530 LVRAYCKRERAALALRVFDEMRAAGVTPDAPTKALLVKSLWREGKLREAALVEERCNDVV 589

Query: 604 D-VPSLALRGHIWAVSSADLTRVHSIYRNSI 633
           D +P ++  GH+W  S+ADL +V  IY   +
Sbjct: 590 DGLPDVS-PGHVWTASAADLKKVLDIYSGCL 619

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242051953|ref|XP_002455122.1| hypothetical protein SORBIDRAFT_03g004720 [Sorghum bicolor] gi|241927097|gb|EES00242.1| hypothetical protein SORBIDRAFT_03g004720 [Sorghum bicolor]

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 274/628 (43%), Positives = 385/628 (61%), Gaps = 42/628 (6%)

Query: 30  TNKLALYLRRAQLIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTHALRSAPNADSALSIM 89
           TN++ALYLRRA+LIDS+R+ +RS+S +S   L  D  +      HA+R+AP    ALS+ 
Sbjct: 35  TNRVALYLRRARLIDSLRVRLRSSSPSSPPPLPLDDPVVAL---HAIRAAPTPSCALSLF 91

Query: 90  EALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYST 149
            AL S           HALA+ LA      +L+  +            +  +      + 
Sbjct: 92  RALPSQ--PPPPLPLYHALASRLASLAALPDLRVHLASFPLPAPPLARLRLL------AA 143

Query: 150 SGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRT 209
           +GD    L  +      A     E++N+V+ ++A+ G++  AVE FR+++ EGA+PN+RT
Sbjct: 144 AGDRASALEAFGSL-PAAPRRPAEAHNVVIELHARDGEHDAAVEAFRRMVREGALPNART 202

Query: 210 YTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMR 269
           YTV+I HL + G +D ALEVF  LP +R++RT++QY +L E      RFD+ + L+ EM 
Sbjct: 203 YTVVIAHLASAGFVDQALEVFRILPSLRVRRTTRQYNVLAEALASTGRFDQLRWLVREMA 262

Query: 270 D-DGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDG--------SDD 320
             DG  PG  MR A+  M+E G I G  +F+ E+ P+ RI    Y  D          +D
Sbjct: 263 AVDGVMPGPQMRAAIAAMREDGHIDGTEDFVEELSPNARIG---YAVDDVEGEGDSEEED 319

Query: 321 DEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVL 380
           ++ E  D ++G +      LKPWLDP+ LA  LD W    V+ L  A  VWT RLVCK+L
Sbjct: 320 EQGEEKDRSNGEK----QTLKPWLDPRELARALDGWDSREVAELEGAGIVWTPRLVCKLL 375

Query: 381 RHFKSPETAWHFFCWVAYQPG--YTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMR 438
           R FK  ETAW FFCWVA +PG  + HD + + +M+ ILAR GHVELV+RL+AK+R+DG+ 
Sbjct: 376 RAFKKAETAWEFFCWVACRPGSGFAHDRHTVARMVAILARTGHVELVERLLAKVRADGIL 435

Query: 439 LPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFD 498
           LP +T+RL+IDFYG+SKKADAA++ F + +++CGPIS+  L LL SSLLRT+TKC+R  D
Sbjct: 436 LPLATVRLVIDFYGLSKKADAAVRVFREAKSICGPISRPNLALLCSSLLRTMTKCRRGLD 495

Query: 499 AINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQ 558
           A+++LEEM+  G++PD+QTFSGLM H A   D K V +L  +VRQ  ++PD YM+ VL++
Sbjct: 496 AMDLLEEMMARGVLPDLQTFSGLMEHLASACDLKGVHRLLGLVRQCELQPDGYMYSVLVR 555

Query: 559 AYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVP 606
           AYCK             +  + + PDA TK LL KSLW+EG+ +EAA VEERCE++    
Sbjct: 556 AYCKRERAALALRVFDEMRAAGVAPDAPTKALLVKSLWREGKLREAALVEERCEEVAGGL 615

Query: 607 SLALRGHIWAVSSADLTRVHSIYRNSIT 634
             A  GH+W  SSADL +V  IY   + 
Sbjct: 616 PEASPGHVWTASSADLKKVLDIYSGCLA 643

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	638
TAIR|locus:4515103769	661	AT5G66631 "AT5G66631" [Arabido	0.915	0.883	0.540	1.6e-184
TAIR|locus:2827701	874	AT2G17140 [Arabidopsis thalian	0.360	0.263	0.248	8.8e-16
TAIR|locus:2044430	822	AT2G18940 [Arabidopsis thalian	0.338	0.262	0.220	4.9e-15
TAIR|locus:2083976	754	MEE40 "maternal effect embryo	0.300	0.254	0.217	3.9e-08
TAIR|locus:2116772	1112	PGR3 "AT4G31850" [Arabidopsis	0.313	0.179	0.240	1.5e-13
TAIR|locus:2171352	535	AT5G16420 "AT5G16420" [Arabido	0.304	0.362	0.26	2.1e-13
TAIR|locus:2164910	747	EMB2745 "EMBRYO DEFECTIVE 2745	0.307	0.262	0.218	2.2e-13
TAIR|locus:2077637	871	AT3G06920 "AT3G06920" [Arabido	0.335	0.245	0.264	1.1e-12
TAIR|locus:2151281	819	AT5G02860 [Arabidopsis thalian	0.360	0.280	0.221	1.4e-12
TAIR|locus:2038841	577	EMB3111 "EMBRYO DEFECTIVE 3111	0.358	0.396	0.227	1.9e-12

TAIR|locus:4515103769 AT5G66631 "AT5G66631" [Arabidopsis thaliana (taxid:3702)]

 Score = 1601 (568.6 bits), Expect = 1.6e-184, Sum P(2) = 1.6e-184
 Identities = 326/603 (54%), Positives = 413/603 (68%)

Query:    20 QTRSFVRAPFTNKLALYLRRAQLIDSIRLAVXXXXXXXXXXXXXXXXXX--PFIVTHALR 77
             Q R F R PF NK+  YL RA LIDSIRL++                     F+V +ALR
Sbjct:    20 QIRFFSRDPFPNKVQHYLYRANLIDSIRLSLRSPTTSDRTLASLLNHRLLDSFVVKNALR 79

Query:    78 SAPNADSALSIMEALK-SNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNV 136
             S+P+  SA SI + L   +P FS    TLHA ATVLAK QR+ EL +LIG +++ KF NV
Sbjct:    80 SSPSVSSAWSIFKTLSHKSPRFSFETETLHAFATVLAKFQRSSELNSLIGVVNAWKFRNV 139

Query:   137 SVNFMNLMQWYSTSGDLELVLSTWNEYR--QRAKLLSTESYNIVMSVYAKTGKNFEAVET 194
               +FMNL+  Y+T+GD + VL TW+EYR     K   TESYNIVM VY   GK+ EAV+T
Sbjct:   140 HFSFMNLLNLYATAGDFDSVLKTWDEYRCSGEEKKGCTESYNIVMQVYMTLGKDSEAVQT 199

Query:   195 FRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVG 254
             F Q+I+EG IPNSRT+T+MIEHLV LG LD+A+++F  LPLMRI RT K Y +LVE FV 
Sbjct:   200 FDQIINEGGIPNSRTFTIMIEHLVKLGNLDAAMKIFETLPLMRITRTLKHYSVLVEAFVD 259

Query:   255 VERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYY 314
              +RFDE K+L+ EM+ DGKFP R M   L+RM+E GF     EFLREMLPD+RIK++  Y
Sbjct:   260 AQRFDEVKTLIAEMKSDGKFPSRRMLEPLKRMREAGFEHETEEFLREMLPDERIKDISMY 319

Query:   315 XXXX-XXXXXXXXXXXXXVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTT 373
                               V  A  V+LKPWLDPKALA +L +WS + V+ L +A FVWT 
Sbjct:   320 SMDNPSDSEDEGDEYKDDVNEAQ-VKLKPWLDPKALATSLKKWSSDAVTALEEANFVWTN 378

Query:   374 RLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLR 433
              LVCK+LR+F++PETAW FFCWVA QPG+THD Y +E+M+ +LAR+G VELVD+LI+K+R
Sbjct:   379 LLVCKMLRNFRAPETAWSFFCWVAIQPGFTHDAYTIERMMAMLARNGQVELVDKLISKVR 438

Query:   434 SDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPIXXXXXXXXXXXXXXXXXXC 493
              +G++LPFSTIRLIID YGISKK +AA+K F++DRTLCG I                  C
Sbjct:   439 IEGIKLPFSTIRLIIDLYGISKKPEAAIKVFNEDRTLCGSISDFNLMLLYSSLLRTLTKC 498

Query:   494 KRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMF 553
             KR+ +A+  LE+M+ +G+ PD+QTFSGLMYHFALQG+ + V++LFSMVRQ G+EPD YM 
Sbjct:   499 KRNAEALETLEDMMLTGVSPDIQTFSGLMYHFALQGEIQTVERLFSMVRQIGLEPDPYML 558

Query:   554 KVLIQAYCK-------Y-----LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEK 601
             K+L+QAYC+       Y     + +SNLMPD  TKELL KSLW+E +RKEAAAVEE  E+
Sbjct:   559 KLLVQAYCRCERSVLAYRVFQDMKDSNLMPDRETKELLVKSLWREEKRKEAAAVEESYEE 618

Query:   602 IND 604
              ND
Sbjct:   619 END 621

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2827701 AT2G17140 [Arabidopsis thaliana (taxid:3702)]

 Score = 194 (73.4 bits), Expect = 8.8e-16, Sum P(2) = 8.8e-16
 Identities = 59/237 (24%), Positives = 108/237 (45%)

Query:    71 IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
             IV+   R   N DS   ++E ++       +  T ++  + L K  +  +   +  D+  
Sbjct:   223 IVSSFCREGRNDDSE-KMVEKMREE-GLVPDIVTFNSRISALCKEGKVLDASRIFSDMEL 280

Query:   131 SKFLNV----SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTG 186
              ++L +    S+ +  +++ +   G LE   + +   R+   L S +SYNI +    + G
Sbjct:   281 DEYLGLPRPNSITYNLMLKGFCKVGLLEDAKTLFESIRENDDLASLQSYNIWLQGLVRHG 340

Query:   187 KNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYL 246
             K  EA    +Q+ D+G  P+  +Y ++++ L  LG L  A  +   +    +   +  Y 
Sbjct:   341 KFIEAETVLKQMTDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVCPDAVTYG 400

Query:   247 ILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREM 302
              L+ G+  V + D AKSLL EM  +   P      + L  + +MG I  A E LR+M
Sbjct:   401 CLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWKMGRISEAEELLRKM 457

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2044430 AT2G18940 [Arabidopsis thaliana (taxid:3702)]

 Score = 155 (59.6 bits), Expect = 4.9e-15, Sum P(2) = 4.9e-15
 Identities = 48/218 (22%), Positives = 94/218 (43%)

Query:    86 LSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQ 145
             L +++ ++S      ++ T   + +  A+     E K    ++ S  +   +V +  L+Q
Sbjct:   266 LGVLDEMRSK-GLKFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNALLQ 324

Query:   146 WYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIP 205
              +  +G     LS   E  + +    + +YN +++ Y + G + EA      +  +G +P
Sbjct:   325 VFGKAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMMTKKGVMP 384

Query:   206 NSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLL 265
             N+ TYT +I+     GK D AL++F ++        +  Y  ++       R +E   +L
Sbjct:   385 NAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKML 444

Query:   266 NEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREM 302
              +M+ +G  P RA     L      G  +  N   REM
Sbjct:   445 CDMKSNGCSPNRATWNTMLALCGNKGMDKFVNRVFREM 482

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2083976 MEE40 "maternal effect embryo arrest 40" [Arabidopsis thaliana (taxid:3702)]

 Score = 143 (55.4 bits), Expect = 3.9e-08, Sum P(2) = 3.9e-08
 Identities = 42/193 (21%), Positives = 86/193 (44%)

Query:    85 ALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLM 144
             A+ +++ + +  + S N  T + L + L K  +  E   L   ++S   L     F +L+
Sbjct:   349 AVEVLDQMITR-DCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLI 407

Query:   145 QWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAI 204
             Q    + +  + +  + E R +       +YN+++      GK  EA+   +Q+   G  
Sbjct:   408 QGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCA 467

Query:   205 PNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSL 264
              +  TY  +I+      K   A E+F  + +  + R S  Y  L++G     R ++A  L
Sbjct:   468 RSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQL 527

Query:   265 LNEMRDDGKFPGR 277
             +++M  +G+ P +
Sbjct:   528 MDQMIMEGQKPDK 540

GO:0005739 "mitochondrion" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA;IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

TAIR|locus:2116772 PGR3 "AT4G31850" [Arabidopsis thaliana (taxid:3702)]

 Score = 171 (65.3 bits), Expect = 1.5e-13, Sum P(3) = 1.5e-13
 Identities = 50/208 (24%), Positives = 98/208 (47%)

Query:    72 VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS 131
             VT  L+S P+ DS+ S  +++  N N  H   T + +   L    +  E+   + D+   
Sbjct:    88 VTRGLKSFPDTDSSFSYFKSVAGNLNLVHTTETCNYMLEALRVDGKLEEM-AYVFDLMQK 146

Query:   132 KFLNVSVN-FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
             + +    N ++ + +  S  G L+       + R+   +L+  SYN ++ +  K+    E
Sbjct:   147 RIIKRDTNTYLTIFKSLSVKGGLKQAPYALRKMREFGFVLNAYSYNGLIHLLLKSRFCTE 206

Query:   191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGK---LDSALEVFSALPLMRIKRTSKQYLI 247
             A+E +R++I EG  P+ +TY+ +   +V LGK   +DS + +   +  + +K     + I
Sbjct:   207 AMEVYRRMILEGFRPSLQTYSSL---MVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTI 263

Query:   248 LVEGFVGVERFDEAKSLLNEMRDDGKFP 275
              +       + +EA  +L  M D+G  P
Sbjct:   264 CIRVLGRAGKINEAYEILKRMDDEGCGP 291

GO:0008150 "biological_process" evidence=ND

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0000272 "polysaccharide catabolic process" evidence=RCA

GO:0005982 "starch metabolic process" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006655 "phosphatidylglycerol biosynthetic process" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

TAIR|locus:2171352 AT5G16420 "AT5G16420" [Arabidopsis thaliana (taxid:3702)]

 Score = 171 (65.3 bits), Expect = 2.1e-13, Sum P(2) = 2.1e-13
 Identities = 52/200 (26%), Positives = 98/200 (49%)

Query:    81 NADSALSI-MEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS-KFLNVSV 138
             N D AL I + A KS+P F+HN  T H++   L++++    +++L+ D+ +S   +    
Sbjct:    61 NIDLALQIFLYAGKSHPGFTHNYDTYHSILFKLSRARAFDPVESLMADLRNSYPPIKCGE 120

Query:   139 N-FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVET-FR 196
             N F++L++ Y  +G  E  +  +          S  S N +++V  +  + F+ V   F+
Sbjct:   121 NLFIDLLRNYGLAGRYESSMRIFLRIPDFGVKRSVRSLNTLLNVLIQN-QRFDLVHAMFK 179

Query:   197 QVIDE-GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGV 255
                +  G  PN  T  ++++ L     ++SA +V   +P M +      Y  ++ G+V  
Sbjct:   180 NSKESFGITPNIFTCNLLVKALCKKNDIESAYKVLDEIPSMGLVPNLVTYTTILGGYVAR 239

Query:   256 ERFDEAKSLLNEMRDDGKFP 275
                + AK +L EM D G +P
Sbjct:   240 GDMESAKRVLEEMLDRGWYP 259

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2164910 EMB2745 "EMBRYO DEFECTIVE 2745" [Arabidopsis thaliana (taxid:3702)]

 Score = 137 (53.3 bits), Expect = 2.2e-13, Sum P(2) = 2.2e-13
 Identities = 43/197 (21%), Positives = 86/197 (43%)

Query:    79 APNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSV 138
             A N D AL++ + +++      N  T + L     K ++  +   L+  ++        +
Sbjct:   218 AGNIDVALTLFDKMETKGCLP-NVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLI 276

Query:   139 NFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQV 198
             ++  ++      G ++ V     E  +R   L   +YN ++  Y K G   +A+    ++
Sbjct:   277 SYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEM 336

Query:   199 IDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERF 258
             +  G  P+  TYT +I  +   G ++ A+E    + +  +    + Y  LV+GF      
Sbjct:   337 LRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYM 396

Query:   259 DEAKSLLNEMRDDGKFP 275
             +EA  +L EM D+G  P
Sbjct:   397 NEAYRVLREMNDNGFSP 413

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

TAIR|locus:2077637 AT3G06920 "AT3G06920" [Arabidopsis thaliana (taxid:3702)]

 Score = 177 (67.4 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
 Identities = 59/223 (26%), Positives = 96/223 (43%)

Query:    86 LSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHE--LKTLIGDISSSKFLNVSVNFMNL 143
             + +M   K  P FS   + + A + V      NH   + TL   +    +      F  L
Sbjct:   156 VQMMRKFKFRPAFSAYTTLIGAFSAV------NHSDMMLTLFQQMQELGYEPTVHLFTTL 209

Query:   144 MQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGA 203
             ++ ++  G ++  LS  +E +  +       YN+ +  + K GK   A + F ++   G 
Sbjct:   210 IRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGL 269

Query:   204 IPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKS 263
              P+  TYT MI  L    +LD A+E+F  L   R    +  Y  ++ G+    +FDEA S
Sbjct:   270 KPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYS 329

Query:   264 LLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREMLPD 305
             LL   R  G  P   A    L  +++MG +  A +   EM  D
Sbjct:   330 LLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMKKD 372

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2151281 AT5G02860 [Arabidopsis thaliana (taxid:3702)]

 Score = 160 (61.4 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
 Identities = 52/235 (22%), Positives = 102/235 (43%)

Query:    71 IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
             ++T   R + + ++A  + E +K+   FS+++ T +AL  V  KS R  E   ++ ++  
Sbjct:   285 LITCCKRGSLHQEAA-QVFEEMKA-AGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVL 342

Query:   131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
             + F    V + +L+  Y+  G L+  +   N+  ++       +Y  ++S + + GK   
Sbjct:   343 NGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVES 402

Query:   191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
             A+  F ++ + G  PN  T+   I+   N GK    +++F  + +  +      +  L+ 
Sbjct:   403 AMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLA 462

Query:   251 GFVGVERFD-EAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREML 303
              F G    D E   +  EM+  G  P R      +      G  + A    R ML
Sbjct:   463 VF-GQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRML 516

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2038841 EMB3111 "EMBRYO DEFECTIVE 3111" [Arabidopsis thaliana (taxid:3702)]

 Score = 184 (69.8 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
 Identities = 53/233 (22%), Positives = 104/233 (44%)

Query:    71 IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
             I+   L++ P    A            F H+  T   +  +  ++ R   + ++   +  
Sbjct:    91 IINRVLKAHPPMQKAWLFFNWAAQIKGFKHDHFTYTTMLDIFGEAGRIQSMYSVFHLMKE 150

Query:   131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
                L  +V + +L+ W S+SGD++  +  W E R      +  SY   M +    G+  E
Sbjct:   151 KGVLIDTVTYTSLIHWVSSSGDVDGAMRLWEEMRDNGCEPTVVSYTAYMKMLFADGRVEE 210

Query:   191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
             A E +++++     PN  TYTV++E+LV  GK + AL++F  +  + ++       IL+ 
Sbjct:   211 ATEVYKEMLRSRVSPNCHTYTVLMEYLVATGKCEEALDIFFKMQEIGVQPDKAACNILIA 270

Query:   251 GFVGVERFDEAKSLLNEMRDDGKFPGRAMRV-ALERMQEMGFIQGANEFLREM 302
               +          +L  M+++G      + V ALE ++  G    +++ LRE+
Sbjct:   271 KALKFGETSFMTRVLVYMKENGVVLRYPIFVEALETLKAAG---ESDDLLREV 320

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B3H4P1	PP450_ARATH	No assigned EC number	0.5816	0.9686	0.9349	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: AT5G66631 unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; CONTAINS InterPro DOMAIN/s- Pentatricopeptide repeat (InterPro-IPR002885); BEST Arabidopsis thaliana protein match is- pentatricopeptide (PPR) repeat-containing protein (TAIR-AT3G16010.1); Has 7784 Blast hits to 2776 proteins in 77 species- Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 51; Plants - 7639; Viruses - 0; Other Eukaryotes - 85 (source- NCBI BLink). (661 aa) (Arabidopsis thaliana)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	638
pfam13041	50	pfam13041, PPR_2, PPR repeat family	5e-07
pfam13041	50	pfam13041, PPR_2, PPR repeat family	1e-05
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	3e-04
pfam13041	50	pfam13041, PPR_2, PPR repeat family	4e-04
pfam13041	50	pfam13041, PPR_2, PPR repeat family	9e-04
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	0.002
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	0.003
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	0.004

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 46.2 bits (111), Expect = 5e-07
 Identities = 16/46 (34%), Positives = 27/46 (58%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVN 219
           +YN ++  Y K GK  EA++ F ++   G  PN  TY+++I+ L  
Sbjct: 5   TYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 42.8 bits (102), Expect = 1e-05
 Identities = 16/50 (32%), Positives = 31/50 (62%)

Query: 513 PDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           PDV T++ L+  +  +G  +   KLF+ +++ G++P+ Y + +LI   CK
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 43.3 bits (102), Expect = 3e-04
 Identities = 37/138 (26%), Positives = 63/138 (45%), Gaps = 8/138 (5%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           S+N +++ Y   G+  +AVE F ++I EG  PN  T+  ++      G  +   E+F ++
Sbjct: 393 SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSM 452

Query: 234 P-LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL---ERMQE- 288
               RIK  +  Y  ++E        DEA +++   R     P   M  AL    R+ + 
Sbjct: 453 SENHRIKPRAMHYACMIELLGREGLLDEAYAMI---RRAPFKPTVNMWAALLTACRIHKN 509

Query: 289 MGFIQGANEFLREMLPDK 306
           +   + A E L  M P+K
Sbjct: 510 LELGRLAAEKLYGMGPEK 527

Length = 697

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 38.2 bits (90), Expect = 4e-04
 Identities = 15/48 (31%), Positives = 26/48 (54%)

Query: 205 PNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGF 252
           P+  TY  +I+     GK++ AL++F+ +    IK     Y IL++G 
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 37.0 bits (87), Expect = 9e-04
 Identities = 13/44 (29%), Positives = 23/44 (52%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFA 526
           Y++L+    K  +  +A+ +  EM   GI P+V T+S L+    
Sbjct: 6   YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 41.0 bits (96), Expect = 0.002
 Identities = 46/226 (20%), Positives = 81/226 (35%), Gaps = 45/226 (19%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
             AL + E L++   F+   ST  AL       +    +K +   + SS F       MN
Sbjct: 104 REALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGF-EPDQYMMN 162

Query: 143 -LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE 201
            ++  +   G L      ++E  +R       S+  ++      G   EA   FR++ ++
Sbjct: 163 RVLLMHVKCGMLIDARRLFDEMPERNLA----SWGTIIGGLVDAGNYREAFALFREMWED 218

Query: 202 GAIPNSRTYTVMIEHLVNL-----------------------------------GKLDSA 226
           G+    RT+ VM+     L                                   G ++ A
Sbjct: 219 GSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDA 278

Query: 227 LEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
             VF  +P    ++T+  +  ++ G+      +EA  L  EMRD G
Sbjct: 279 RCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG 320

Length = 697

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 40.2 bits (94), Expect = 0.003
 Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 8/82 (9%)

Query: 482 LYSSLLRTLTKCKRDFDAI-NVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLF-- 538
           LY++L+ T  K  +  DA+  V  EM+ +G+  +V TF  L+   A  G    V K F  
Sbjct: 474 LYTTLISTCAKSGK-VDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ---VAKAFGA 529

Query: 539 -SMVRQNGVEPDAYMFKVLIQA 559
             ++R   V+PD  +F  LI A
Sbjct: 530 YGIMRSKNVKPDRVVFNALISA 551

Length = 1060

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 40.2 bits (94), Expect = 0.004
 Identities = 28/110 (25%), Positives = 52/110 (47%), Gaps = 3/110 (2%)

Query: 160 WNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVN 219
           WN++    K +   S+NI+++ Y   GK   AVE F ++++ G  P+  T+  ++     
Sbjct: 544 WNQFNSHEKDVV--SWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSR 601

Query: 220 LGKLDSALEVFSALPL-MRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268
            G +   LE F ++     I    K Y  +V+      +  EA + +N+M
Sbjct: 602 SGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651

Length = 857

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	638
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.96
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.95
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.87
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.85
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.85
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.84
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.84
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.81
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.8
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.8
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.79
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.79
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.78
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.78
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.77
PRK14574	822	hmsH outer membrane protein; Provisional	99.75
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.72
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.72
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.7
PRK14574	822	hmsH outer membrane protein; Provisional	99.7
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.64
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.61
KOG2076	895	consensus RNA polymerase III transcription factor	99.52
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.45
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.44
PF13041	50	PPR_2: PPR repeat family	99.43
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.43
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.41
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.4
PF13041	50	PPR_2: PPR repeat family	99.4
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.39
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.38
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.38
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.37
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.37
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.36
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.35
KOG2076	895	consensus RNA polymerase III transcription factor	99.33
KOG1126	638	consensus DNA-binding cell division cycle control	99.31
KOG2003	840	consensus TPR repeat-containing protein [General f	99.3
KOG2003	840	consensus TPR repeat-containing protein [General f	99.3
KOG1126	638	consensus DNA-binding cell division cycle control	99.26
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.24
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.23
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.18
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.18
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.18
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.17
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.17
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.17
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.11
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.07
PRK12370	553	invasion protein regulator; Provisional	99.07
PRK12370	553	invasion protein regulator; Provisional	99.05
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.03
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.03
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.01
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.99
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.97
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.95
KOG1129	478	consensus TPR repeat-containing protein [General f	98.94
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.93
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.93
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.87
PF12854	34	PPR_1: PPR repeat	98.87
KOG1129	478	consensus TPR repeat-containing protein [General f	98.85
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.84
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.83
PF12854	34	PPR_1: PPR repeat	98.82
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.79
PRK11189	296	lipoprotein NlpI; Provisional	98.77
PRK11189	296	lipoprotein NlpI; Provisional	98.76
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.72
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.71
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.71
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.68
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.64
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.61
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.59
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.59
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.59
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.56
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.55
PRK04841	903	transcriptional regulator MalT; Provisional	98.54
KOG2047	835	consensus mRNA splicing factor [RNA processing and	98.54
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.53
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.52
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.5
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.46
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.46
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.43
PRK04841	903	transcriptional regulator MalT; Provisional	98.43
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.4
KOG1125	579	consensus TPR repeat-containing protein [General f	98.34
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.32
KOG1125	579	consensus TPR repeat-containing protein [General f	98.32
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.27
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.23
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.22
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.2
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.2
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.14
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.13
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.12
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.12
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.1
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.1
PLN02789	320	farnesyltranstransferase	98.1
PLN02789	320	farnesyltranstransferase	98.08
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	98.08
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.07
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.02
PRK10370	198	formate-dependent nitrite reductase complex subuni	97.98
PRK14720	906	transcript cleavage factor/unknown domain fusion p	97.97
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	97.96
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	97.96
PRK14720	906	transcript cleavage factor/unknown domain fusion p	97.96
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.94
PRK10370	198	formate-dependent nitrite reductase complex subuni	97.9
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	97.9
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.9
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	97.89
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.89
PRK15359	144	type III secretion system chaperone protein SscB;	97.88
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.87
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	97.86
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	97.86
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.85
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	97.85
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	97.83
PRK15359	144	type III secretion system chaperone protein SscB;	97.79
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	97.78
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.77
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	97.76
COG4783	484	Putative Zn-dependent protease, contains TPR repea	97.76
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.76
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.75
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.73
TIGR02552	135	LcrH_SycD type III secretion low calcium response	97.72
KOG3060	289	consensus Uncharacterized conserved protein [Funct	97.71
COG4783	484	Putative Zn-dependent protease, contains TPR repea	97.69
TIGR02552	135	LcrH_SycD type III secretion low calcium response	97.67
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.59
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	97.56
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	97.5
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.45
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.44
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.33
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.33
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.28
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.23
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.23
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.22
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.15
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.11
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.09
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.05
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	96.99
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	96.98
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	96.96
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	96.92
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	96.91
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.9
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	96.9
KOG3060	289	consensus Uncharacterized conserved protein [Funct	96.89
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	96.87
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	96.8
KOG2041	1189	consensus WD40 repeat protein [General function pr	96.76
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	96.75
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	96.73
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	96.68
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	96.58
KOG0553	304	consensus TPR repeat-containing protein [General f	96.57
KOG2041	1189	consensus WD40 repeat protein [General function pr	96.53
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	96.52
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.44
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	96.4
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	96.38
PF12688	120	TPR_5: Tetratrico peptide repeat	96.36
PF12688	120	TPR_5: Tetratrico peptide repeat	96.36
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	96.36
KOG3941	406	consensus Intermediate in Toll signal transduction	96.33
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	96.26
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.21
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	96.2
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	96.18
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	96.17
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.07
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	96.01
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	95.95
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	95.93
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	95.9
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	95.87
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	95.84
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	95.82
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	95.81
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	95.78
COG4700	251	Uncharacterized protein conserved in bacteria cont	95.78
smart00299	140	CLH Clathrin heavy chain repeat homology.	95.74
KOG0553	304	consensus TPR repeat-containing protein [General f	95.63
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	95.63
PF13371	73	TPR_9: Tetratricopeptide repeat	95.62
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	95.6
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	95.58
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	95.58
PRK10803	263	tol-pal system protein YbgF; Provisional	95.48
PRK10803	263	tol-pal system protein YbgF; Provisional	95.48
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	95.4
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	95.31
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	95.14
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	94.94
COG4700	251	Uncharacterized protein conserved in bacteria cont	94.84
KOG2796	366	consensus Uncharacterized conserved protein [Funct	94.83
PF13371	73	TPR_9: Tetratricopeptide repeat	94.8
smart00299	140	CLH Clathrin heavy chain repeat homology.	94.75
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	94.6
KOG3941	406	consensus Intermediate in Toll signal transduction	94.5
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	94.37
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	94.33
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	94.13
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	94.02
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	93.82
COG3118	304	Thioredoxin domain-containing protein [Posttransla	93.73
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	93.58
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	93.44
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	93.4
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	93.34
KOG2610	491	consensus Uncharacterized conserved protein [Funct	93.33
KOG4555	175	consensus TPR repeat-containing protein [Function	93.26
PRK15331	165	chaperone protein SicA; Provisional	93.16
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	92.7
COG3118	304	Thioredoxin domain-containing protein [Posttransla	92.52
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	92.51
COG3629	280	DnrI DNA-binding transcriptional activator of the	92.39
COG4105	254	ComL DNA uptake lipoprotein [General function pred	92.27
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	92.18
PRK11906	458	transcriptional regulator; Provisional	91.86
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	91.84
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	91.8
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	91.76
KOG2610	491	consensus Uncharacterized conserved protein [Funct	91.63
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	91.61
PF13512	142	TPR_18: Tetratricopeptide repeat	91.44
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	91.06
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	91.05
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	91.03
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	90.74
COG3898	531	Uncharacterized membrane-bound protein [Function u	90.74
PRK15331	165	chaperone protein SicA; Provisional	90.55
KOG4555	175	consensus TPR repeat-containing protein [Function	90.39
KOG4570	418	consensus Uncharacterized conserved protein [Funct	90.35
PF13428	44	TPR_14: Tetratricopeptide repeat	90.3
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	90.17
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	90.01
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	89.79
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	89.79
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	89.57
PF13428	44	TPR_14: Tetratricopeptide repeat	89.55
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	89.36
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	89.22
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	89.05
COG0457	291	NrfG FOG: TPR repeat [General function prediction	88.83
COG4105	254	ComL DNA uptake lipoprotein [General function pred	88.71
COG3629	280	DnrI DNA-binding transcriptional activator of the	88.46
KOG4570	418	consensus Uncharacterized conserved protein [Funct	88.37
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	88.31
PRK11906	458	transcriptional regulator; Provisional	88.21
COG3898	531	Uncharacterized membrane-bound protein [Function u	88.02
KOG1585	308	consensus Protein required for fusion of vesicles	87.8
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	87.52
KOG1941	518	consensus Acetylcholine receptor-associated protei	87.51
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	86.95
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	86.86
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	86.85
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	86.38
PF13512	142	TPR_18: Tetratricopeptide repeat	86.15
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	86.11
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	85.23
PF13929	292	mRNA_stabil: mRNA stabilisation	85.1
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	85.03
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	85.01
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	84.86
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	84.15
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	83.57
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	83.36
KOG1550	552	consensus Extracellular protein SEL-1 and related	82.11
KOG1585	308	consensus Protein required for fusion of vesicles	81.98
COG0457	291	NrfG FOG: TPR repeat [General function prediction	81.14
COG5159	421	RPN6 26S proteasome regulatory complex component [	80.54
PF13762	145	MNE1: Mitochondrial splicing apparatus component	80.04

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=1.8e-67  Score=572.76  Aligned_cols=465  Identities=15%  Similarity=0.178  Sum_probs=268.2

Q ss_pred             HHHHHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHH
Q 006615           69 PFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYS  148 (638)
Q Consensus        69 ~~~~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~  148 (638)
                      +..++..|++.|++++|+++|++|.+.+-+.|+...++.++..|.+.|.+++|..+++.|..    ||..+|+.++.+|+
T Consensus       373 ~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~  448 (1060)
T PLN03218        373 YIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCA  448 (1060)
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHH
Confidence            44455666666666666666666665543445555555555666666666666665555543    55566666666666


Q ss_pred             hcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 006615          149 TSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALE  228 (638)
Q Consensus       149 ~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~  228 (638)
                      +.|+++.|.++|++|.+.|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.+
T Consensus       449 k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~  528 (1060)
T PLN03218        449 SSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFG  528 (1060)
T ss_pred             hCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHH
Confidence            66666666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHh--CCCCCCHHHH-HHHHHHHHcCChHHHHHHHHHhCcC
Q 006615          229 VFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRD--DGKFPGRAMR-VALERMQEMGFIQGANEFLREMLPD  305 (638)
Q Consensus       229 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~--~g~~p~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~  305 (638)
                      +|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|..  .|+.||..++ .++.+|++.|++++|.++|++|.+.
T Consensus       529 lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~  608 (1060)
T PLN03218        529 AYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY  608 (1060)
T ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence            666666556666666666666666666666666666666643  4555655555 5555666666666666666655443


Q ss_pred             ccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCC
Q 006615          306 KRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKS  385 (638)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (638)
                      +..++..                                                           ....+...+.+.|+
T Consensus       609 gi~p~~~-----------------------------------------------------------tynsLI~ay~k~G~  629 (1060)
T PLN03218        609 NIKGTPE-----------------------------------------------------------VYTIAVNSCSQKGD  629 (1060)
T ss_pred             CCCCChH-----------------------------------------------------------HHHHHHHHHHhcCC
Confidence            3322211                                                           11223444455555


Q ss_pred             hhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHH
Q 006615          386 PETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFH  465 (638)
Q Consensus       386 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~  465 (638)
                      +++|.++|++| ...|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|+
T Consensus       630 ~deAl~lf~eM-~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~  708 (1060)
T PLN03218        630 WDFALSIYDDM-KKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYE  708 (1060)
T ss_pred             HHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            66666666555 34555566666666666666666666666666666666666666666666666666666666666666


Q ss_pred             hchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 006615          466 DDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNG  545 (638)
Q Consensus       466 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~  545 (638)
                      +|.+.   ...|+. .+||+||.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|
T Consensus       709 eM~~~---g~~Pdv-vtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~G  784 (1060)
T PLN03218        709 DIKSI---KLRPTV-STMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDG  784 (1060)
T ss_pred             HHHHc---CCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence            55443   223442 55666666666666666666666666655666666666666666666666666666666666666


Q ss_pred             CCCCHhhHHHHHHHHHH-----------------------------H------hhhCCCCCCHHHHHHHHHHHhccCcHH
Q 006615          546 VEPDAYMFKVLIQAYCK-----------------------------Y------LSNSNLMPDAATKELLKKSLWKEGRRK  590 (638)
Q Consensus       546 ~~p~~~~~~~li~~~~~-----------------------------~------m~~~g~~p~~~~~~~li~~~~~~g~~~  590 (638)
                      +.||..+|++|+..|.+                             +      |.+.|+.||..||+.++.++++.+.++
T Consensus       785 i~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~  864 (1060)
T PLN03218        785 IKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDAT  864 (1060)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHH
Confidence            66666666665543321                             0      555555666555555555555555555


Q ss_pred             HHHHHHHHHHH
Q 006615          591 EAAAVEERCEK  601 (638)
Q Consensus       591 ~A~~~~~~~~~  601 (638)
                      .+.++++.|..
T Consensus       865 ~~~~m~~~m~~  875 (1060)
T PLN03218        865 LRNRLIENLGI  875 (1060)
T ss_pred             HHHHHHHHhcc
Confidence            55555555443

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=9e-67  Score=567.22  Aligned_cols=519  Identities=13%  Similarity=0.118  Sum_probs=457.9

Q ss_pred             hhhHHHHhchhhhHHHHHHHHhcCCCCcchhhhccCCCCHHHHHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHH
Q 006615           30 TNKLALYLRRAQLIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALA  109 (638)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li  109 (638)
                      ...+..+++ .+.++.+..+|+.+......+   .....+..++..+.+.|.+++|+.+|+.|..     |+..+|+.++
T Consensus       374 ~~~y~~l~r-~G~l~eAl~Lfd~M~~~gvv~---~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-----pd~~Tyn~LL  444 (1060)
T PLN03218        374 IDAYNRLLR-DGRIKDCIDLLEDMEKRGLLD---MDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-----PTLSTFNMLM  444 (1060)
T ss_pred             HHHHHHHHH-CcCHHHHHHHHHHHHhCCCCC---chHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-----CCHHHHHHHH
Confidence            334444443 345566677777665433221   1122344578889999999999999999874     8999999999


Q ss_pred             HHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChH
Q 006615          110 TVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNF  189 (638)
Q Consensus       110 ~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~  189 (638)
                      .+|++.|+++.|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.|+++
T Consensus       445 ~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~e  524 (1060)
T PLN03218        445 SVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVA  524 (1060)
T ss_pred             HHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc--CCCccCHhHHHHHHHHHHccCCHHHHHHHHHH
Q 006615          190 EAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPL--MRIKRTSKQYLILVEGFVGVERFDEAKSLLNE  267 (638)
Q Consensus       190 ~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~  267 (638)
                      +|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|..  .|+.||..+|++||.+|++.|++++|.++|++
T Consensus       525 eAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~  604 (1060)
T PLN03218        525 KAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQM  604 (1060)
T ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999976  68999999999999999999999999999999


Q ss_pred             HHhCCCCCCHHHH-HHHHHHHHcCChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCCCccccccccccCCCCh
Q 006615          268 MRDDGKFPGRAMR-VALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDP  346 (638)
Q Consensus       268 m~~~g~~p~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (638)
                      |.+.|+.|+..+| .++.+|++.|++++|.++|++|...+..|+..                                  
T Consensus       605 M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~----------------------------------  650 (1060)
T PLN03218        605 IHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEV----------------------------------  650 (1060)
T ss_pred             HHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH----------------------------------
Confidence            9999999999888 88999999999999999999998776555432                                  


Q ss_pred             hhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHH
Q 006615          347 KALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVD  426 (638)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~  426 (638)
                                               ....+...+.+.|++++|.++|+.| .+.|+.||..+|+++|.+|++.|++++|.
T Consensus       651 -------------------------TynsLI~a~~k~G~~eeA~~l~~eM-~k~G~~pd~~tynsLI~ay~k~G~~eeA~  704 (1060)
T PLN03218        651 -------------------------FFSALVDVAGHAGDLDKAFEILQDA-RKQGIKLGTVSYSSLMGACSNAKNWKKAL  704 (1060)
T ss_pred             -------------------------HHHHHHHHHHhCCCHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHhCCCHHHHH
Confidence                                     1234667788899999999999998 57799999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHH
Q 006615          427 RLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEM  506 (638)
Q Consensus       427 ~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m  506 (638)
                      ++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|...   ...||. .+|+++|.+|++.|++++|.++|++|
T Consensus       705 ~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~---Gi~Pd~-~Ty~sLL~a~~k~G~le~A~~l~~~M  780 (1060)
T PLN03218        705 ELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL---GLCPNT-ITYSILLVASERKDDADVGLDLLSQA  780 (1060)
T ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc---CCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999876   446775 89999999999999999999999999


Q ss_pred             HhCCCCcchhhHHHHHHHHHc----c-------------------CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHH
Q 006615          507 IFSGIVPDVQTFSGLMYHFAL----Q-------------------GDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY  563 (638)
Q Consensus       507 ~~~g~~p~~~t~~~li~~~~~----~-------------------g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~  563 (638)
                      .+.|+.||..+|++|+..|.+    .                   +..++|..+|++|++.|+.||..||+.+|.++++.
T Consensus       781 ~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~  860 (1060)
T PLN03218        781 KEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLP  860 (1060)
T ss_pred             HHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccc
Confidence            999999999999999976432    1                   23478999999999999999999999999766544


Q ss_pred             ------------hhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHccCCCCcccccceeeeeccccc
Q 006615          564 ------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLALRGHIWAVSSADLT  623 (638)
Q Consensus       564 ------------m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~  623 (638)
                                  |...+..|+..+|++||+++++.  .++|..++++|.+.|+.|....+..-|...-..+.
T Consensus       861 ~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~~~~~~~~~d~~~~~  930 (1060)
T PLN03218        861 HDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVSFKKSPIVIDAEELP  930 (1060)
T ss_pred             ccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcccccCceEEEcccCc
Confidence                        44567788899999999999543  37899999999999998877666667877555443

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=2.9e-63  Score=551.49  Aligned_cols=553  Identities=15%  Similarity=0.151  Sum_probs=404.8

Q ss_pred             hhHHHHhchhhhHHHHHHHHhcCCCCcchhhhccCCCCHHHHHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHH
Q 006615           31 NKLALYLRRAQLIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALAT  110 (638)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~  110 (638)
                      +.+...+.+.+.++.+..+|+.+..+.        ..++..++.+|++.|++++|+++|+.|... |+.||..+|+.+++
T Consensus       125 n~li~~~~~~g~~~~A~~~f~~m~~~d--------~~~~n~li~~~~~~g~~~~A~~~f~~M~~~-g~~Pd~~t~~~ll~  195 (857)
T PLN03077        125 NAMLSMFVRFGELVHAWYVFGKMPERD--------LFSWNVLVGGYAKAGYFDEALCLYHRMLWA-GVRPDVYTFPCVLR  195 (857)
T ss_pred             HHHHHHHHhCCChHHHHHHHhcCCCCC--------eeEHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCChhHHHHHHH
Confidence            344444455566677777787776533        456777999999999999999999999977 78999999988888


Q ss_pred             HHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHH
Q 006615          111 VLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE  190 (638)
Q Consensus       111 ~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~  190 (638)
                      +|++.+++..+.+++..|.+.|+.||..+|++|+.+|+++|++++|..+|++|..    ||..+||+||.+|++.|++++
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~e  271 (857)
T PLN03077        196 TCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLE  271 (857)
T ss_pred             HhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHH
Confidence            8888888888888888888878778777777777777777777777777777753    456777777777777777777


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006615          191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRD  270 (638)
Q Consensus       191 A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~  270 (638)
                      |+++|++|.+.|+.||..||+.+|.+|++.|+++.|.+++..|.+.|+.||..+||+||.+|++.|++++|.++|++|..
T Consensus       272 Al~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~  351 (857)
T PLN03077        272 GLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET  351 (857)
T ss_pred             HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC
Confidence            77777777777777777777777776666666666666666666666666666666666666666666666666666642


Q ss_pred             CCCCCCHHHH-HHHHHHHHcCChHHHHHHHHHhCcCccccccccccC-----CCCCccccccC--------CCCCccccc
Q 006615          271 DGKFPGRAMR-VALERMQEMGFIQGANEFLREMLPDKRIKNVRYYED-----GSDDDEDENDD--------NNSGVRIAY  336 (638)
Q Consensus       271 ~g~~p~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~--------~~~~~~~~~  336 (638)
                          ||..++ +++.+|++.|++++|.++|++|...+..|+...+..     ...+..+....        ........+
T Consensus       352 ----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~  427 (857)
T PLN03077        352 ----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVA  427 (857)
T ss_pred             ----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHH
Confidence                344343 556666666666666666666655555444332210     00000000000        000000011


Q ss_pred             cccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHH
Q 006615          337 GVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTIL  416 (638)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~  416 (638)
                      +..+..+...+.+..+...+..    ....+...|+.  +...+...|+.++|+++|++|.  .++.||..||+.+|.+|
T Consensus       428 n~Li~~y~k~g~~~~A~~vf~~----m~~~d~vs~~~--mi~~~~~~g~~~eA~~lf~~m~--~~~~pd~~t~~~lL~a~  499 (857)
T PLN03077        428 NALIEMYSKCKCIDKALEVFHN----IPEKDVISWTS--IIAGLRLNNRCFEALIFFRQML--LTLKPNSVTLIAALSAC  499 (857)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHh----CCCCCeeeHHH--HHHHHHHCCCHHHHHHHHHHHH--hCCCCCHhHHHHHHHHH
Confidence            1122222222333333222110    11122334444  4455667889999999999985  35899999999999999


Q ss_pred             HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCCh
Q 006615          417 ARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRD  496 (638)
Q Consensus       417 ~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~  496 (638)
                      ++.|+++.+.+++..+.+.|+.+|..+++++|++|+++|++++|.++|+.+        .|+ ..+||+||.+|++.|+.
T Consensus       500 ~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--------~~d-~~s~n~lI~~~~~~G~~  570 (857)
T PLN03077        500 ARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--------EKD-VVSWNILLTGYVAHGKG  570 (857)
T ss_pred             hhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc--------CCC-hhhHHHHHHHHHHcCCH
Confidence            999999999999999999999999999999999999999999999999985        344 48999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHH-hCCCCCCHhhHHHHHHHHHHH---------hhh
Q 006615          497 FDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR-QNGVEPDAYMFKVLIQAYCKY---------LSN  566 (638)
Q Consensus       497 ~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~-~~~~~p~~~~~~~li~~~~~~---------m~~  566 (638)
                      ++|+++|++|.+.|+.||..||+++|.+|++.|++++|.++|+.|. +.|+.|+..+|++++++|++.         +.+
T Consensus       571 ~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~  650 (857)
T PLN03077        571 SMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINK  650 (857)
T ss_pred             HHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999 789999999999999999998         445


Q ss_pred             CCCCCCHHHHHHHHHH----------------------------------HhccCcHHHHHHHHHHHHHccCCCCccccc
Q 006615          567 SNLMPDAATKELLKKS----------------------------------LWKEGRRKEAAAVEERCEKINDVPSLALRG  612 (638)
Q Consensus       567 ~g~~p~~~~~~~li~~----------------------------------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  612 (638)
                      ..++||..+|++|+.+                                  |+..|+|++|.++.+.|++.|.   .+..+
T Consensus       651 m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~---~k~~g  727 (857)
T PLN03077        651 MPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGL---TVDPG  727 (857)
T ss_pred             CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCC---CCCCC
Confidence            5677887777766665                                  4567888899999999999888   45577


Q ss_pred             ceeeeecc
Q 006615          613 HIWAVSSA  620 (638)
Q Consensus       613 ~~w~~~~~  620 (638)
                      .+|...++
T Consensus       728 ~s~ie~~~  735 (857)
T PLN03077        728 CSWVEVKG  735 (857)
T ss_pred             ccEEEECC
Confidence            88887543

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=3.4e-62  Score=530.12  Aligned_cols=471  Identities=15%  Similarity=0.167  Sum_probs=427.5

Q ss_pred             CCHHHHHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHH
Q 006615           67 LDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQW  146 (638)
Q Consensus        67 ~~~~~~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~  146 (638)
                      .++..++..|.+.|++++|+++|++|....++.||..+|+.++.+|++.++++.+.+++..|.+.|+.||..+|+.|+.+
T Consensus        88 ~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~  167 (697)
T PLN03081         88 VSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLM  167 (697)
T ss_pred             eeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence            46777899999999999999999999987668899999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 006615          147 YSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSA  226 (638)
Q Consensus       147 ~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A  226 (638)
                      |++.|+++.|.++|++|.+    ||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.+
T Consensus       168 y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~  243 (697)
T PLN03081        168 HVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG  243 (697)
T ss_pred             HhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence            9999999999999999975    679999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHcCChHHHHHHHHHhCcC
Q 006615          227 LEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMR-VALERMQEMGFIQGANEFLREMLPD  305 (638)
Q Consensus       227 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~  305 (638)
                      .+++..+.+.|+.||..+||+||++|++.|++++|.++|++|..    +|..++ +++.+|++.|++++|.++|++|...
T Consensus       244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~  319 (697)
T PLN03081        244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDS  319 (697)
T ss_pred             HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999999999999999964    466666 8999999999999999999999766


Q ss_pred             ccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCC
Q 006615          306 KRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKS  385 (638)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (638)
                      +..|+..                                                           +...+...+.+.|.
T Consensus       320 g~~pd~~-----------------------------------------------------------t~~~ll~a~~~~g~  340 (697)
T PLN03081        320 GVSIDQF-----------------------------------------------------------TFSIMIRIFSRLAL  340 (697)
T ss_pred             CCCCCHH-----------------------------------------------------------HHHHHHHHHHhccc
Confidence            5544432                                                           22345667778899


Q ss_pred             hhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHH
Q 006615          386 PETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFH  465 (638)
Q Consensus       386 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~  465 (638)
                      +++|.+++..+ .+.|+.||..+|+++|.+|++.|++++|.++|++|.+    ||..+||+||.+|++.|+.++|.++|+
T Consensus       341 ~~~a~~i~~~m-~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~  415 (697)
T PLN03081        341 LEHAKQAHAGL-IRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFE  415 (697)
T ss_pred             hHHHHHHHHHH-HHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHH
Confidence            99999999998 5778999999999999999999999999999999863    688999999999999999999999999


Q ss_pred             hchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHh-CCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006615          466 DDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIF-SGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQN  544 (638)
Q Consensus       466 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~  544 (638)
                      +|.+.   ...||. .+|+++|.+|++.|..++|.++|++|.+ .|+.|+..+|++++.+|++.|++++|.+++++|   
T Consensus       416 ~M~~~---g~~Pd~-~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---  488 (697)
T PLN03081        416 RMIAE---GVAPNH-VTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---  488 (697)
T ss_pred             HHHHh---CCCCCH-HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---
Confidence            99876   457775 8999999999999999999999999976 699999999999999999999999999998765   


Q ss_pred             CCCCCHhhHHHHHHHHHHH----------hhhCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHccCCCCcccccc
Q 006615          545 GVEPDAYMFKVLIQAYCKY----------LSNSNLMPD-AATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLALRGH  613 (638)
Q Consensus       545 ~~~p~~~~~~~li~~~~~~----------m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  613 (638)
                      ++.|+..+|++|+.+|+..          ..-.++.|+ ..+|..|++.|++.|++++|.+++++|++.|.   .++++.
T Consensus       489 ~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~---~k~~g~  565 (697)
T PLN03081        489 PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGL---SMHPAC  565 (697)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCC---ccCCCe
Confidence            6889999999999999876          112467775 67999999999999999999999999999998   345688


Q ss_pred             eeeeec
Q 006615          614 IWAVSS  619 (638)
Q Consensus       614 ~w~~~~  619 (638)
                      +|...+
T Consensus       566 s~i~~~  571 (697)
T PLN03081        566 TWIEVK  571 (697)
T ss_pred             eEEEEC
Confidence            997744

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=1.4e-61  Score=537.86  Aligned_cols=493  Identities=15%  Similarity=0.193  Sum_probs=325.7

Q ss_pred             HHHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhc
Q 006615           71 IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTS  150 (638)
Q Consensus        71 ~~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~  150 (638)
                      .++..+.+.+.++.|..++..+.+. +..++...++.++..|++.|+++.|.++|++|.+    ||..+||.++.+|++.
T Consensus        91 ~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~----~d~~~~n~li~~~~~~  165 (857)
T PLN03077         91 ALFRLCEWKRAVEEGSRVCSRALSS-HPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPE----RDLFSWNVLVGGYAKA  165 (857)
T ss_pred             HHHHHHhhCCCHHHHHHHHHHHHHc-CCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCC----CCeeEHHHHHHHHHhC
Confidence            3444445555555555555554443 2344444555555555555555555555555542    4445555555555555


Q ss_pred             CCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 006615          151 GDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF  230 (638)
Q Consensus       151 g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~  230 (638)
                      |++++|.++|++|...|+.||..||+++|++|++.++++.+.+++..|.+.|+.||..+||+||.+|++.|++++|.++|
T Consensus       166 g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf  245 (857)
T PLN03077        166 GYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVF  245 (857)
T ss_pred             CCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHH
Confidence            55555555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHcCChHHHHHHHHHhCcCcccc
Q 006615          231 SALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMR-VALERMQEMGFIQGANEFLREMLPDKRIK  309 (638)
Q Consensus       231 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~~~~~  309 (638)
                      ++|.    .||..+||+||.+|++.|++++|.++|++|...|+.||..+| .++.+|++.|+.+.|.+++..|.+.+..+
T Consensus       246 ~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~  321 (857)
T PLN03077        246 DRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAV  321 (857)
T ss_pred             hcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcc
Confidence            5554    345555555555555555555555555555555555555554 45555555555555555555554444433


Q ss_pred             ccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChhHH
Q 006615          310 NVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETA  389 (638)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  389 (638)
                      +...+                      +..+..+...+.+..+...+..    ........  ...+...+.+.|++++|
T Consensus       322 d~~~~----------------------n~Li~~y~k~g~~~~A~~vf~~----m~~~d~~s--~n~li~~~~~~g~~~~A  373 (857)
T PLN03077        322 DVSVC----------------------NSLIQMYLSLGSWGEAEKVFSR----METKDAVS--WTAMISGYEKNGLPDKA  373 (857)
T ss_pred             chHHH----------------------HHHHHHHHhcCCHHHHHHHHhh----CCCCCeee--HHHHHHHHHhCCCHHHH
Confidence            32211                      1111112222222222111110    00111223  34456667788999999


Q ss_pred             HHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchh
Q 006615          390 WHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRT  469 (638)
Q Consensus       390 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~  469 (638)
                      +++|+.| ...|+.||..||+.++.+|++.|+++.|.++++.|.+.|+.|+..+|+.||++|++.|++++|.++|++|.+
T Consensus       374 ~~lf~~M-~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~  452 (857)
T PLN03077        374 LETYALM-EQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE  452 (857)
T ss_pred             HHHHHHH-HHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC
Confidence            9999998 577899999999999999999999999999999999999999999999999999999999999999998753


Q ss_pred             ccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCC-------------------------------------
Q 006615          470 LCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIV-------------------------------------  512 (638)
Q Consensus       470 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-------------------------------------  512 (638)
                             ++ +.+||++|.+|++.|+.++|+++|++|.. +++                                     
T Consensus       453 -------~d-~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~  523 (857)
T PLN03077        453 -------KD-VISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFD  523 (857)
T ss_pred             -------CC-eeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCcc
Confidence                   33 26788888888887777777777777764 344                                     


Q ss_pred             ----------------------------cchhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHH-
Q 006615          513 ----------------------------PDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY-  563 (638)
Q Consensus       513 ----------------------------p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~-  563 (638)
                                                  ||.++||++|.+|++.|+.++|.++|++|.+.|+.||..||+++|.+|++. 
T Consensus       524 ~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g  603 (857)
T PLN03077        524 GFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSG  603 (857)
T ss_pred             ceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcC
Confidence                                        455667888888899999999999999999999999999999999999976 


Q ss_pred             -----------hh-hCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHccCCCCcccccceeee
Q 006615          564 -----------LS-NSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLALRGHIWAV  617 (638)
Q Consensus       564 -----------m~-~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~w~~  617 (638)
                                 |. +.|+.|+..+|++++++|++.|++++|.+++++|       |..|+...|.+
T Consensus       604 ~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-------~~~pd~~~~~a  662 (857)
T PLN03077        604 MVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-------PITPDPAVWGA  662 (857)
T ss_pred             hHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-------CCCCCHHHHHH
Confidence                       76 7899999999999999999999999999999986       45677777765

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=3.8e-59  Score=506.25  Aligned_cols=459  Identities=11%  Similarity=0.158  Sum_probs=408.2

Q ss_pred             chhhHHHHhchhhhHHHHHHHHhcCCCCcchhhhccCCCCHHHHHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHH
Q 006615           29 FTNKLALYLRRAQLIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHAL  108 (638)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~l  108 (638)
                      +++.+..+...++. +.+..+|+.+....   .+.+....+..++.++.+.++++.|.+++..|.+. |+.||..+|+.+
T Consensus        90 ~~~~i~~l~~~g~~-~~Al~~f~~m~~~~---~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~-g~~~~~~~~n~L  164 (697)
T PLN03081         90 LCSQIEKLVACGRH-REALELFEILEAGC---PFTLPASTYDALVEACIALKSIRCVKAVYWHVESS-GFEPDQYMMNRV  164 (697)
T ss_pred             HHHHHHHHHcCCCH-HHHHHHHHHHHhcC---CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh-CCCcchHHHHHH
Confidence            34455555554444 44444554442211   01123455677999999999999999999999988 799999999999


Q ss_pred             HHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCCh
Q 006615          109 ATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKN  188 (638)
Q Consensus       109 i~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~  188 (638)
                      +..|++.|+++.|.++|++|.+    ||..+||+++.+|++.|++++|.++|++|.+.|+.||..+|+.++.++++.|+.
T Consensus       165 i~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~  240 (697)
T PLN03081        165 LLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA  240 (697)
T ss_pred             HHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcH
Confidence            9999999999999999999975    789999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHH
Q 006615          189 FEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM  268 (638)
Q Consensus       189 ~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m  268 (638)
                      +.+.+++..+.+.|+.||..+|++||++|++.|++++|.++|++|.    .+|.++||+||.+|++.|++++|.++|++|
T Consensus       241 ~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M  316 (697)
T PLN03081        241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEM  316 (697)
T ss_pred             HHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999998    579999999999999999999999999999


Q ss_pred             HhCCCCCCHHHH-HHHHHHHHcCChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCCCccccccccccCCCChh
Q 006615          269 RDDGKFPGRAMR-VALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPK  347 (638)
Q Consensus       269 ~~~g~~p~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (638)
                      .+.|+.||..++ +++.+|++.|++++|.+++..|.+.+..++..                                   
T Consensus       317 ~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~-----------------------------------  361 (697)
T PLN03081        317 RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIV-----------------------------------  361 (697)
T ss_pred             HHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCee-----------------------------------
Confidence            999999999998 88999999999999999999997766544432                                   


Q ss_pred             hHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHH
Q 006615          348 ALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDR  427 (638)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~  427 (638)
                                              ....+..++.++|++++|.++|+.|.     .||..+||+||.+|++.|+.++|.+
T Consensus       362 ------------------------~~~~Li~~y~k~G~~~~A~~vf~~m~-----~~d~~t~n~lI~~y~~~G~~~~A~~  412 (697)
T PLN03081        362 ------------------------ANTALVDLYSKWGRMEDARNVFDRMP-----RKNLISWNALIAGYGNHGRGTKAVE  412 (697)
T ss_pred             ------------------------ehHHHHHHHHHCCCHHHHHHHHHhCC-----CCCeeeHHHHHHHHHHcCCHHHHHH
Confidence                                    23457788889999999999999985     4799999999999999999999999


Q ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 006615          428 LIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMI  507 (638)
Q Consensus       428 l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~  507 (638)
                      +|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+..+.  .|+. .+|+++|++|++.|++++|.+++++| 
T Consensus       413 lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~--~p~~-~~y~~li~~l~r~G~~~eA~~~~~~~-  488 (697)
T PLN03081        413 MFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRI--KPRA-MHYACMIELLGREGLLDEAYAMIRRA-  488 (697)
T ss_pred             HHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCC--CCCc-cchHhHHHHHHhcCCHHHHHHHHHHC-
Confidence            9999999999999999999999999999999999999999875443  4553 79999999999999999999999876 


Q ss_pred             hCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHHH------------hhhCCCCCC
Q 006615          508 FSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPD-AYMFKVLIQAYCKY------------LSNSNLMPD  572 (638)
Q Consensus       508 ~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~-~~~~~~li~~~~~~------------m~~~g~~p~  572 (638)
                        ++.||..+|++|+.+|...|+++.|.++++++.+  +.|+ ..+|+.|++.|++.            |++.|+++.
T Consensus       489 --~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~  562 (697)
T PLN03081        489 --PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMH  562 (697)
T ss_pred             --CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccC
Confidence              5789999999999999999999999999999974  5565 67999999999987            888888644

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.96  E-value=3.3e-24  Score=244.37  Aligned_cols=520  Identities=12%  Similarity=0.020  Sum_probs=348.4

Q ss_pred             HHHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhc
Q 006615           71 IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTS  150 (638)
Q Consensus        71 ~~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~  150 (638)
                      .+...+...|++++|...|+.+.+..  +.+...+..+...+.+.|++++|...++.+.... +.+...+..+...+.+.
T Consensus       300 ~~~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~  376 (899)
T TIGR02917       300 LAGASEYQLGNLEQAYQYLNQILKYA--PNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLAL  376 (899)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHC
Confidence            34556778889999999998887653  2344567777888888899999999888887653 44566788888888899


Q ss_pred             CCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 006615          151 GDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF  230 (638)
Q Consensus       151 g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~  230 (638)
                      |++++|..+|+++.+.+ +.+...|..+...+...|++++|.+.|+++.+.... +......++..+.+.|++++|.+++
T Consensus       377 g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~  454 (899)
T TIGR02917       377 GDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAA  454 (899)
T ss_pred             CCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHH
Confidence            99999999998887764 345667778888888888899898888888775422 3445566777888888888888888


Q ss_pred             HhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHhCcCccccc
Q 006615          231 SALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKN  310 (638)
Q Consensus       231 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~  310 (638)
                      +.+.... ..+..+|..+...+...|++++|.+.|+++.+.........+.+...+...|++++|.+.++.+........
T Consensus       455 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~  533 (899)
T TIGR02917       455 KKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNL  533 (899)
T ss_pred             HHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcH
Confidence            8877542 346677888888888888888888888888765443333445677778888888888888887753221100


Q ss_pred             cccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChhHHH
Q 006615          311 VRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAW  390 (638)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  390 (638)
                      ....                    ..   ...+...+....+...+... ..  ..+........++..+...|++++|.
T Consensus       534 ~~~~--------------------~l---~~~~~~~~~~~~A~~~~~~~-~~--~~~~~~~~~~~l~~~~~~~~~~~~A~  587 (899)
T TIGR02917       534 RAIL--------------------AL---AGLYLRTGNEEEAVAWLEKA-AE--LNPQEIEPALALAQYYLGKGQLKKAL  587 (899)
T ss_pred             HHHH--------------------HH---HHHHHHcCCHHHHHHHHHHH-HH--hCccchhHHHHHHHHHHHCCCHHHHH
Confidence            0000                    00   00000000011111000000 00  01111112234566677788888888


Q ss_pred             HHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhc
Q 006615          391 HFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL  470 (638)
Q Consensus       391 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~  470 (638)
                      +.++.+....  +.+...|..+..++...|++++|...|+.+.+... .+...+..+..+|.+.|++++|...|+++.+.
T Consensus       588 ~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  664 (899)
T TIGR02917       588 AILNEAADAA--PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALEL  664 (899)
T ss_pred             HHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            8888875332  44667788888888888888888888888876553 25667777888888888888888888887654


Q ss_pred             cCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH
Q 006615          471 CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDA  550 (638)
Q Consensus       471 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~  550 (638)
                           .|+...+|..+...+...|++++|.++++.+.+.+ +++...+..+...+...|++++|.+.|+.+...+  |+.
T Consensus       665 -----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~  736 (899)
T TIGR02917       665 -----KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSS  736 (899)
T ss_pred             -----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCc
Confidence                 33334678888888888888888888888887764 3456667777778888888888888888877653  555


Q ss_pred             hhHHHHHHHHHHH---------hh--hCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHccCCCCcccccceeeeec
Q 006615          551 YMFKVLIQAYCKY---------LS--NSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLALRGHIWAVSS  619 (638)
Q Consensus       551 ~~~~~li~~~~~~---------m~--~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~w~~~~  619 (638)
                      .++..+...+.+.         +.  -.....+...+..+...|.+.|++++|.+.++++.+..+..+.......|....
T Consensus       737 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  816 (899)
T TIGR02917       737 QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLE  816 (899)
T ss_pred             hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence            5566666666544         11  011233466777777777788888888888888877665444333444454433


Q ss_pred             cccchhcccccccc
Q 006615          620 ADLTRVHSIYRNSI  633 (638)
Q Consensus       620 ~~~~~~~~~~~~~~  633 (638)
                      ....++++.|++++
T Consensus       817 ~~~~~A~~~~~~~~  830 (899)
T TIGR02917       817 LKDPRALEYAEKAL  830 (899)
T ss_pred             cCcHHHHHHHHHHH
Confidence            32255555555544

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.95  E-value=1.6e-23  Score=238.63  Aligned_cols=486  Identities=14%  Similarity=0.079  Sum_probs=355.4

Q ss_pred             HHHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhc
Q 006615           71 IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTS  150 (638)
Q Consensus        71 ~~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~  150 (638)
                      .+...+...|++++|+..|+.+.+....  .......++..+.+.|++++|..+++.+... .+.+..++..+...|...
T Consensus       402 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~  478 (899)
T TIGR02917       402 QLGISKLSQGDPSEAIADLETAAQLDPE--LGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGK  478 (899)
T ss_pred             HHHHHHHhCCChHHHHHHHHHHHhhCCc--chhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhC
Confidence            3566777889999999999988865322  2235566777888999999999999988764 355677888899999999


Q ss_pred             CCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 006615          151 GDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF  230 (638)
Q Consensus       151 g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~  230 (638)
                      |++++|...|+++.+.+ +.+...+..+...+...|++++|.+.|+++.+.+ +.+..++..+...+.+.|+.++|..+|
T Consensus       479 ~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~  556 (899)
T TIGR02917       479 GDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWL  556 (899)
T ss_pred             CCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            99999999999988764 4456778888889999999999999999998764 236788888999999999999999999


Q ss_pred             HhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHhCcCccccc
Q 006615          231 SALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKN  310 (638)
Q Consensus       231 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~  310 (638)
                      +++.+.+ ..+...+..+...|.+.|++++|..+++++..........++.+...+...|++++|...++.+.....   
T Consensus       557 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---  632 (899)
T TIGR02917       557 EKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP---  632 (899)
T ss_pred             HHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---
Confidence            9887654 346677888999999999999999999998775544334455778889999999999999988743211   


Q ss_pred             cccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChhHHH
Q 006615          311 VRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAW  390 (638)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  390 (638)
                                                                               ........++..+...|++++|.
T Consensus       633 ---------------------------------------------------------~~~~~~~~l~~~~~~~~~~~~A~  655 (899)
T TIGR02917       633 ---------------------------------------------------------DSALALLLLADAYAVMKNYAKAI  655 (899)
T ss_pred             ---------------------------------------------------------CChHHHHHHHHHHHHcCCHHHHH
Confidence                                                                     00111233566666778888888


Q ss_pred             HHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhc
Q 006615          391 HFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL  470 (638)
Q Consensus       391 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~  470 (638)
                      ..|..+....  +.+..++..+...+...|++++|.++++.+...+. .+...+..+...+.+.|++++|...|+.+...
T Consensus       656 ~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~  732 (899)
T TIGR02917       656 TSLKRALELK--PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKR  732 (899)
T ss_pred             HHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence            8888775432  33567788888888888888888888888877663 35667777778888888888888888887664


Q ss_pred             cCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH
Q 006615          471 CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDA  550 (638)
Q Consensus       471 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~  550 (638)
                      .     |+. .++..+...+.+.|+.++|.+.++++.+.. +.+...++.+...|...|++++|.+.|+++.+.. .++.
T Consensus       733 ~-----~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~  804 (899)
T TIGR02917       733 A-----PSS-QNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNA  804 (899)
T ss_pred             C-----CCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCH
Confidence            2     222 456667788888888888888888887753 3466777777888888888888888888887754 3456


Q ss_pred             hhHHHHHHHHHHH-------h--hhCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHccCCCCcccccceeee-ec
Q 006615          551 YMFKVLIQAYCKY-------L--SNSNLMPD-AATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLALRGHIWAV-SS  619 (638)
Q Consensus       551 ~~~~~li~~~~~~-------m--~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~w~~-~~  619 (638)
                      .+++.+...+.+.       +  +.....|+ ..++..+...+.+.|++++|.++++++.+.++..|..-....+.. ..
T Consensus       805 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~  884 (899)
T TIGR02917       805 VVLNNLAWLYLELKDPRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLAT  884 (899)
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHc
Confidence            6666666655543       1  11123343 456677788888888888888888888887764333222222222 35


Q ss_pred             cccchhcccccccc
Q 006615          620 ADLTRVHSIYRNSI  633 (638)
Q Consensus       620 ~~~~~~~~~~~~~~  633 (638)
                      +..+++...|+.++
T Consensus       885 g~~~~A~~~~~~~~  898 (899)
T TIGR02917       885 GRKAEARKELDKLL  898 (899)
T ss_pred             CCHHHHHHHHHHHh
Confidence            55666666665543

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.87  E-value=2.3e-19  Score=183.01  Aligned_cols=302  Identities=12%  Similarity=0.090  Sum_probs=227.9

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHc
Q 006615          144 MQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPN---SRTYTVMIEHLVNL  220 (638)
Q Consensus       144 l~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~ty~~li~~~~~~  220 (638)
                      ...+...|++++|...|+++.+.+ +.+..++..+...+.+.|++++|.++++.+.+.+..++   ..++..+...|.+.
T Consensus        42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~  120 (389)
T PRK11788         42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA  120 (389)
T ss_pred             HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence            344567788888888888888764 34566788888888888888888888888877532221   24577778888888


Q ss_pred             CCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH----HH-HHHHHHHHcCChHHH
Q 006615          221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRA----MR-VALERMQEMGFIQGA  295 (638)
Q Consensus       221 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----~~-~ll~~~~~~g~~~~a  295 (638)
                      |++++|.++|+++.+.. ..+..+++.++..+.+.|++++|.+.++++.+.+..+...    .+ .+...+.+.|++++|
T Consensus       121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  199 (389)
T PRK11788        121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA  199 (389)
T ss_pred             CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence            88888888888887642 3466788888888888888888888888887765444321    11 344556677777777


Q ss_pred             HHHHHHhCcCccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHH
Q 006615          296 NEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRL  375 (638)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (638)
                      ...++++...                                                                      
T Consensus       200 ~~~~~~al~~----------------------------------------------------------------------  209 (389)
T PRK11788        200 RALLKKALAA----------------------------------------------------------------------  209 (389)
T ss_pred             HHHHHHHHhH----------------------------------------------------------------------
Confidence            7777766311                                                                      


Q ss_pred             HHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccC
Q 006615          376 VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISK  455 (638)
Q Consensus       376 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g  455 (638)
                                              .  +.+...+..+...+.+.|++++|.++++++...+......+++.+..+|.+.|
T Consensus       210 ------------------------~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g  263 (389)
T PRK11788        210 ------------------------D--PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALG  263 (389)
T ss_pred             ------------------------C--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcC
Confidence                                    0  11344667788888999999999999999887654433567788889999999


Q ss_pred             CHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHc---cCCHH
Q 006615          456 KADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFAL---QGDEK  532 (638)
Q Consensus       456 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~---~g~~~  532 (638)
                      ++++|...++.+.+..     |+. ..+..++..+.+.|+.++|.++++++.+.  .|+..+++.++..+..   .|+.+
T Consensus       264 ~~~~A~~~l~~~~~~~-----p~~-~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~  335 (389)
T PRK11788        264 DEAEGLEFLRRALEEY-----PGA-DLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAK  335 (389)
T ss_pred             CHHHHHHHHHHHHHhC-----CCc-hHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccch
Confidence            9999999999887652     332 34588889999999999999999998875  6899999988887764   55889


Q ss_pred             HHHHHHHHHHhCCCCCCHh
Q 006615          533 IVQKLFSMVRQNGVEPDAY  551 (638)
Q Consensus       533 ~a~~l~~~m~~~~~~p~~~  551 (638)
                      ++..++++|.+.++.|+..
T Consensus       336 ~a~~~~~~~~~~~~~~~p~  354 (389)
T PRK11788        336 ESLLLLRDLVGEQLKRKPR  354 (389)
T ss_pred             hHHHHHHHHHHHHHhCCCC
Confidence            9999999999888777654

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.85  E-value=1.2e-18  Score=177.86  Aligned_cols=299  Identities=14%  Similarity=0.084  Sum_probs=185.6

Q ss_pred             HhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---HHhHHHHHHHHHhcCChH
Q 006615          113 AKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLS---TESYNIVMSVYAKTGKNF  189 (638)
Q Consensus       113 ~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~  189 (638)
                      ...|+++.|...|.++.+.+ +.+..++..+...+.+.|++++|..+++.+...+..++   ..++..+...|.+.|+++
T Consensus        46 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~  124 (389)
T PRK11788         46 LLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD  124 (389)
T ss_pred             HhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence            34455666666666655542 22334455555666666666666666666554321111   234555566666666666


Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccC----HhHHHHHHHHHHccCCHHHHHHHH
Q 006615          190 EAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRT----SKQYLILVEGFVGVERFDEAKSLL  265 (638)
Q Consensus       190 ~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~l~  265 (638)
                      +|..+|+++.+.. +++..+++.++..+.+.|++++|.+.++.+.+.+..++    ...|..+...+.+.|++++|...|
T Consensus       125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  203 (389)
T PRK11788        125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL  203 (389)
T ss_pred             HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            6666666665531 22455566666666666666666666666654332111    113445555666667777777777


Q ss_pred             HHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCCCccccccccccCCCC
Q 006615          266 NEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLD  345 (638)
Q Consensus       266 ~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (638)
                      +++.+.........+.+...+.+.|++++|.++++++....                                       
T Consensus       204 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---------------------------------------  244 (389)
T PRK11788        204 KKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQD---------------------------------------  244 (389)
T ss_pred             HHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC---------------------------------------
Confidence            76655432222222345556666666666666666552100                                       


Q ss_pred             hhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHH
Q 006615          346 PKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELV  425 (638)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a  425 (638)
                                                                              -.....+++.+..+|++.|++++|
T Consensus       245 --------------------------------------------------------p~~~~~~~~~l~~~~~~~g~~~~A  268 (389)
T PRK11788        245 --------------------------------------------------------PEYLSEVLPKLMECYQALGDEAEG  268 (389)
T ss_pred             --------------------------------------------------------hhhHHHHHHHHHHHHHHcCCHHHH
Confidence                                                                    001134567788888999999999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHc---cCChHHHHHH
Q 006615          426 DRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTK---CKRDFDAINV  502 (638)
Q Consensus       426 ~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~l  502 (638)
                      ...++++.+..  |+...+..+...+.+.|++++|..+++++.+.     .|+. ..++.++..+..   .|+.+++..+
T Consensus       269 ~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~-----~P~~-~~~~~l~~~~~~~~~~g~~~~a~~~  340 (389)
T PRK11788        269 LEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR-----HPSL-RGFHRLLDYHLAEAEEGRAKESLLL  340 (389)
T ss_pred             HHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CcCH-HHHHHHHHHhhhccCCccchhHHHH
Confidence            99999888764  45556688888999999999999999887664     4554 577877877664   5689999999


Q ss_pred             HHHHHhCCCCcchh
Q 006615          503 LEEMIFSGIVPDVQ  516 (638)
Q Consensus       503 ~~~m~~~g~~p~~~  516 (638)
                      +++|.+.+++|+..
T Consensus       341 ~~~~~~~~~~~~p~  354 (389)
T PRK11788        341 LRDLVGEQLKRKPR  354 (389)
T ss_pred             HHHHHHHHHhCCCC
Confidence            99999988877765

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.85  E-value=3.9e-18  Score=165.45  Aligned_cols=461  Identities=14%  Similarity=0.027  Sum_probs=331.2

Q ss_pred             HHHHHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHH
Q 006615           69 PFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYS  148 (638)
Q Consensus        69 ~~~~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~  148 (638)
                      ...+.+-+-+.|++.+|.+--..+-+.+....+  ..-.+-..+....+.+....--....+ ..+.-..+|..+...+-
T Consensus        51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~--~llll~ai~~q~~r~d~s~a~~~~a~r-~~~q~ae~ysn~aN~~k  127 (966)
T KOG4626|consen   51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTE--RLLLLSAIFFQGSRLDKSSAGSLLAIR-KNPQGAEAYSNLANILK  127 (966)
T ss_pred             HHHHHHHHHhccCHHHHHHHHhHhhccCCCccc--ceeeehhhhhcccchhhhhhhhhhhhh-ccchHHHHHHHHHHHHH
Confidence            344677888999999999988776655432222  222222334444444443332222222 23445677999999999


Q ss_pred             hcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHHHcCCHHHHH
Q 006615          149 TSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIE-HLVNLGKLDSAL  227 (638)
Q Consensus       149 ~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~-~~~~~g~~~~A~  227 (638)
                      ..|++++|+.+++.+.+.. +-.+..|..+..++...|+.+.|.+.|.+..+  +.|+.....+-+. ..-..|++++|.
T Consensus       128 erg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~  204 (966)
T KOG4626|consen  128 ERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAK  204 (966)
T ss_pred             HhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhH
Confidence            9999999999999999875 34688999999999999999999999999888  5677666554443 344579999999


Q ss_pred             HHHHhcccCCCccC-HhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHhCcCc
Q 006615          228 EVFSALPLMRIKRT-SKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDK  306 (638)
Q Consensus       228 ~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~  306 (638)
                      ..|.+..+.  .|. .+.|+.|...+-..|+...|+.-|++..+.+..--..++++-..|...+.+++|..-+.+.....
T Consensus       205 ~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr  282 (966)
T KOG4626|consen  205 ACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR  282 (966)
T ss_pred             HHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC
Confidence            999887764  344 57799999999999999999999999987665555567799999999999999998877653221


Q ss_pred             cccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCCh
Q 006615          307 RIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSP  386 (638)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (638)
                      ....+.                                                            .--++..+-+.|..
T Consensus       283 pn~A~a------------------------------------------------------------~gNla~iYyeqG~l  302 (966)
T KOG4626|consen  283 PNHAVA------------------------------------------------------------HGNLACIYYEQGLL  302 (966)
T ss_pred             Ccchhh------------------------------------------------------------ccceEEEEeccccH
Confidence            110000                                                            00012223446888


Q ss_pred             hHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHh
Q 006615          387 ETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD  466 (638)
Q Consensus       387 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  466 (638)
                      +-|++.|+.......-  =...|+.|..++-..|++.+|.+.+.+....... .....+.|...|...|.+++|..+|..
T Consensus       303 dlAI~~Ykral~~~P~--F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~  379 (966)
T KOG4626|consen  303 DLAIDTYKRALELQPN--FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLK  379 (966)
T ss_pred             HHHHHHHHHHHhcCCC--chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            8888888887644322  2346888888888889999999888887765433 456777888888888999999988888


Q ss_pred             chhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcc-hhhHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 006615          467 DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPD-VQTFSGLMYHFALQGDEKIVQKLFSMVRQNG  545 (638)
Q Consensus       467 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~  545 (638)
                      ..+.     .|.....+|.|...|-+.|++++|+..+++.+.  ++|+ ...|+.+-..|-..|+++.|.+.+.+.+.. 
T Consensus       380 al~v-----~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~-  451 (966)
T KOG4626|consen  380 ALEV-----FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI-  451 (966)
T ss_pred             HHhh-----ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc-
Confidence            7754     555567888888888889999999998888876  5676 457888888888888888888888887763 


Q ss_pred             CCCCHhhHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHccCCCCcccc--------cceeee
Q 006615          546 VEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLALR--------GHIWAV  617 (638)
Q Consensus       546 ~~p~~~~~~~li~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--------~~~w~~  617 (638)
                       .|.                      =...++.|...|-..|++.+|+.-++...+.+++.|..--        .+-|.-
T Consensus       452 -nPt----------------------~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D  508 (966)
T KOG4626|consen  452 -NPT----------------------FAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD  508 (966)
T ss_pred             -CcH----------------------HHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence             222                      1445677888888888888888888888877765554321        123655


Q ss_pred             eccccchhcccccc
Q 006615          618 SSADLTRVHSIYRN  631 (638)
Q Consensus       618 ~~~~~~~~~~~~~~  631 (638)
                      .++-+.|..+|-|.
T Consensus       509 ~d~~~~kl~sivrd  522 (966)
T KOG4626|consen  509 YDKRMKKLVSIVRD  522 (966)
T ss_pred             hHHHHHHHHHHHHH
Confidence            55555555555443

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.84  E-value=1.2e-15  Score=174.90  Aligned_cols=488  Identities=10%  Similarity=-0.019  Sum_probs=302.2

Q ss_pred             HHHHHHHcCCChhHHHHHHHHHHcCCCCCCChh--------------HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCc
Q 006615           71 IVTHALRSAPNADSALSIMEALKSNPNFSHNQS--------------TLHALATVLAKSQRNHELKTLIGDISSSKFLNV  136 (638)
Q Consensus        71 ~~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~--------------~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~  136 (638)
                      .....+.+.|+.++|.+.++.+.+..+-.+...              ........+.+.|++++|...|+.+.+.. +|+
T Consensus        67 ~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~  145 (1157)
T PRK11447         67 ARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPE  145 (1157)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCC
Confidence            356777899999999999999886532222211              11233446788899999999999988754 333


Q ss_pred             hHh-HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCC------------
Q 006615          137 SVN-FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGA------------  203 (638)
Q Consensus       137 ~~~-~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~------------  203 (638)
                      ... ...+.......|+.++|...++++.+.. +-+...+..+...+...|+.++|++.|+++.+...            
T Consensus       146 ~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~  224 (1157)
T PRK11447        146 LDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQ  224 (1157)
T ss_pred             hHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHH
Confidence            221 1111122234589999999999999875 45677788888999999999999999998755311            


Q ss_pred             ------C--------------CCHHHH---------------------HHHHHHHHHcCCHHHHHHHHHhcccCCCccCH
Q 006615          204 ------I--------------PNSRTY---------------------TVMIEHLVNLGKLDSALEVFSALPLMRIKRTS  242 (638)
Q Consensus       204 ------~--------------p~~~ty---------------------~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~  242 (638)
                            .              |+...+                     ......+...|++++|...|++..+.. +.+.
T Consensus       225 l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~  303 (1157)
T PRK11447        225 IKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDS  303 (1157)
T ss_pred             HhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH
Confidence                  0              110000                     011234556788888888888877642 2267


Q ss_pred             hHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH--HH--------H----HHHHHHHHcCChHHHHHHHHHhCcCccc
Q 006615          243 KQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR--AM--------R----VALERMQEMGFIQGANEFLREMLPDKRI  308 (638)
Q Consensus       243 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~~--------~----~ll~~~~~~g~~~~a~~~~~~~~~~~~~  308 (638)
                      ..+..|...+.+.|++++|+..|++..+.......  .+        +    .....+.+.|++++|...+++.......
T Consensus       304 ~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~  383 (1157)
T PRK11447        304 EALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNT  383 (1157)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence            77888888888889999999988888765433221  11        1    1134567888888888888877532110


Q ss_pred             cccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChhH
Q 006615          309 KNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPET  388 (638)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (638)
                                                                                  .......++.++...|++++
T Consensus       384 ------------------------------------------------------------~~~a~~~Lg~~~~~~g~~~e  403 (1157)
T PRK11447        384 ------------------------------------------------------------DSYAVLGLGDVAMARKDYAA  403 (1157)
T ss_pred             ------------------------------------------------------------CHHHHHHHHHHHHHCCCHHH
Confidence                                                                        01111223333444444444


Q ss_pred             HHHHHHHHhcCCCCcCC----------------------------------------HHHHHHHHHHHHhcCChHHHHHH
Q 006615          389 AWHFFCWVAYQPGYTHD----------------------------------------VYALEKMLTILARHGHVELVDRL  428 (638)
Q Consensus       389 a~~~~~~~~~~~~~~p~----------------------------------------~~~~~~li~~~~~~g~~~~a~~l  428 (638)
                      |.+.|+.......-.+.                                        ...+..+...+...|++++|.+.
T Consensus       404 A~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~  483 (1157)
T PRK11447        404 AERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAEL  483 (1157)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHH
Confidence            44444443322110000                                        01122334445567778888888


Q ss_pred             HHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHH------------------------
Q 006615          429 IAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYS------------------------  484 (638)
Q Consensus       429 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~------------------------  484 (638)
                      |++..+.... +...+..+...|.+.|++++|...++++.+..+..  +   ..+.                        
T Consensus       484 ~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~--~---~~~~a~al~l~~~~~~~~Al~~l~~l~~  557 (1157)
T PRK11447        484 QRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPND--P---EQVYAYGLYLSGSDRDRAALAHLNTLPR  557 (1157)
T ss_pred             HHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--H---HHHHHHHHHHHhCCCHHHHHHHHHhCCc
Confidence            8877765533 45566667777788888888888887765532211  1   1111                        


Q ss_pred             --------------------HHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006615          485 --------------------SLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQN  544 (638)
Q Consensus       485 --------------------~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~  544 (638)
                                          .+...+...|+.++|.++++.     .+++...+..+...+.+.|++++|++.|++..+.
T Consensus       558 ~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~  632 (1157)
T PRK11447        558 AQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR  632 (1157)
T ss_pred             hhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence                                223345556666666666551     1334556677788888999999999999998875


Q ss_pred             CCCCCHhhHHHHHHHHHHH----------hhhCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHccCCCCccc-cc
Q 006615          545 GVEPDAYMFKVLIQAYCKY----------LSNSNLMPD-AATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLAL-RG  612 (638)
Q Consensus       545 ~~~p~~~~~~~li~~~~~~----------m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~  612 (638)
                      . ..+...+..+...|...          -.-....|+ ...+..+..++...|++++|.++++++.+.....|... +.
T Consensus       633 ~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a  711 (1157)
T PRK11447        633 E-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESA  711 (1157)
T ss_pred             C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhH
Confidence            3 23456666666666554          111234454 55667788888899999999999999888654322211 11


Q ss_pred             ce------eeeeccccchhcccccccc
Q 006615          613 HI------WAVSSADLTRVHSIYRNSI  633 (638)
Q Consensus       613 ~~------w~~~~~~~~~~~~~~~~~~  633 (638)
                      ..      +-...++..++...|+.+.
T Consensus       712 ~~~~~~a~~~~~~G~~~~A~~~y~~Al  738 (1157)
T PRK11447        712 LVLRDAARFEAQTGQPQQALETYKDAM  738 (1157)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            11      1235678888888888775

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.84  E-value=6e-16  Score=177.31  Aligned_cols=430  Identities=11%  Similarity=0.019  Sum_probs=314.6

Q ss_pred             HHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-chHhHH----------
Q 006615           73 THALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLN-VSVNFM----------  141 (638)
Q Consensus        73 ~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~-~~~~~~----------  141 (638)
                      ...+...|++++|+..|+...+..  +.+...+..+..++.+.|++++|...|++..+..... ....+.          
T Consensus       276 G~~~~~~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~  353 (1157)
T PRK11447        276 GLAAVDSGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL  353 (1157)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence            345667899999999999988653  2356688889999999999999999999988644221 111121          


Q ss_pred             --HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHH
Q 006615          142 --NLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIP-NSRTYTVMIEHLV  218 (638)
Q Consensus       142 --~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~ty~~li~~~~  218 (638)
                        .+...+.+.|++++|...|++..+.. +.+...+..+...+...|++++|.+.|++..+.  .| +...+..+...|.
T Consensus       354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~--~p~~~~a~~~L~~l~~  430 (1157)
T PRK11447        354 LIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRM--DPGNTNAVRGLANLYR  430 (1157)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence              22456778999999999999999875 456778888899999999999999999999885  34 4556666666664


Q ss_pred             HcCCHHHHHHHHHhcccCCCc--------cCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 006615          219 NLGKLDSALEVFSALPLMRIK--------RTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMG  290 (638)
Q Consensus       219 ~~g~~~~A~~~~~~m~~~g~~--------p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g  290 (638)
                       .++.++|..+++.+....-.        .....+..+...+...|++++|.+.|++..+.........+.+...+.+.|
T Consensus       431 -~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G  509 (1157)
T PRK11447        431 -QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAG  509 (1157)
T ss_pred             -hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence             56789999998876532100        012345567788889999999999999998764332233457788899999


Q ss_pred             ChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcc
Q 006615          291 FIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFV  370 (638)
Q Consensus       291 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (638)
                      ++++|...++++.......                                                            .
T Consensus       510 ~~~~A~~~l~~al~~~P~~------------------------------------------------------------~  529 (1157)
T PRK11447        510 QRSQADALMRRLAQQKPND------------------------------------------------------------P  529 (1157)
T ss_pred             CHHHHHHHHHHHHHcCCCC------------------------------------------------------------H
Confidence            9999999999874321100                                                            0


Q ss_pred             cchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHH---------HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 006615          371 WTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVY---------ALEKMLTILARHGHVELVDRLIAKLRSDGMRLPF  441 (638)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~---------~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~  441 (638)
                      ......+..+...++.++|+..+..+... ...++..         .+..+...+...|+.++|.++++.     .+.+.
T Consensus       530 ~~~~a~al~l~~~~~~~~Al~~l~~l~~~-~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~  603 (1157)
T PRK11447        530 EQVYAYGLYLSGSDRDRAALAHLNTLPRA-QWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPST  603 (1157)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHhCCch-hcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCc
Confidence            00112334455678888888888765321 1122211         123456678889999999999872     23355


Q ss_pred             HHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcc-hhhHHH
Q 006615          442 STIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPD-VQTFSG  520 (638)
Q Consensus       442 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~  520 (638)
                      ..+..+...+.+.|++++|...|+...+.     .|+....+..+...|...|+.++|++.++...+.  .|+ ..++..
T Consensus       604 ~~~~~La~~~~~~g~~~~A~~~y~~al~~-----~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~  676 (1157)
T PRK11447        604 RIDLTLADWAQQRGDYAAARAAYQRVLTR-----EPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQRR  676 (1157)
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHHH
Confidence            66777888999999999999999998875     4444578999999999999999999999988764  444 455667


Q ss_pred             HHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHHhhhCCCCC---CHHHHHHHHHHHhccCcHHHHHHHHH
Q 006615          521 LMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMP---DAATKELLKKSLWKEGRRKEAAAVEE  597 (638)
Q Consensus       521 li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~A~~~~~  597 (638)
                      +..++...|++++|.++++.+....  |+.                   .|   +...+..+...+...|++++|.+.++
T Consensus       677 la~~~~~~g~~~eA~~~~~~al~~~--~~~-------------------~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~  735 (1157)
T PRK11447        677 VALAWAALGDTAAAQRTFNRLIPQA--KSQ-------------------PPSMESALVLRDAARFEAQTGQPQQALETYK  735 (1157)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHhhhC--ccC-------------------CcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            7788899999999999999988642  211                   11   23455667788889999999999999


Q ss_pred             HHHHc
Q 006615          598 RCEKI  602 (638)
Q Consensus       598 ~~~~~  602 (638)
                      +....
T Consensus       736 ~Al~~  740 (1157)
T PRK11447        736 DAMVA  740 (1157)
T ss_pred             HHHhh
Confidence            98753

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.81  E-value=3.9e-16  Score=151.74  Aligned_cols=395  Identities=15%  Similarity=0.118  Sum_probs=309.8

Q ss_pred             HHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcC
Q 006615           72 VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSG  151 (638)
Q Consensus        72 ~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g  151 (638)
                      +...+....+++.....-....+..  +--..+|..+...+...|++.+|..+++.+.+.. +.....|..+..++...|
T Consensus        88 l~ai~~q~~r~d~s~a~~~~a~r~~--~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~  164 (966)
T KOG4626|consen   88 LSAIFFQGSRLDKSSAGSLLAIRKN--PQGAEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQG  164 (966)
T ss_pred             ehhhhhcccchhhhhhhhhhhhhcc--chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcC
Confidence            3445556666666555444333322  2234588889999999999999999999988753 345667888999999999


Q ss_pred             CHHHHHHHHHHHHhcCCCCCHHhHHHHH-HHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHH
Q 006615          152 DLELVLSTWNEYRQRAKLLSTESYNIVM-SVYAKTGKNFEAVETFRQVIDEGAIPN-SRTYTVMIEHLVNLGKLDSALEV  229 (638)
Q Consensus       152 ~~~~A~~l~~~m~~~~~~p~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~~  229 (638)
                      +.+.|.+.|.+..+.+  |+.....+-+ ..+-..|++++|...|.+..+.  .|. ...|+.|-..+-..|+.-.|.+-
T Consensus       165 ~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~  240 (966)
T KOG4626|consen  165 DLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQH  240 (966)
T ss_pred             CCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHH
Confidence            9999999999988865  6666554444 4444579999999999888874  343 56778888888889999999999


Q ss_pred             HHhcccCCCccC-HhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH-H-HHHHHHHHcCChHHHHHHHHHhCcCc
Q 006615          230 FSALPLMRIKRT-SKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-R-VALERMQEMGFIQGANEFLREMLPDK  306 (638)
Q Consensus       230 ~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~-~-~ll~~~~~~g~~~~a~~~~~~~~~~~  306 (638)
                      |++..+.  .|+ ...|-.|-..|...+.+++|...|.+...  ..|+... + ++...|...|.++-|++.+++.... 
T Consensus       241 y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~--lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~-  315 (966)
T KOG4626|consen  241 YEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALN--LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL-  315 (966)
T ss_pred             HHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh--cCCcchhhccceEEEEeccccHHHHHHHHHHHHhc-
Confidence            9988764  455 46788899999999999999999988765  4565543 3 6667788899999999999876432 


Q ss_pred             cccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCCh
Q 006615          307 RIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSP  386 (638)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (638)
                                                                                 .+++.....-++.++...|+.
T Consensus       316 -----------------------------------------------------------~P~F~~Ay~NlanALkd~G~V  336 (966)
T KOG4626|consen  316 -----------------------------------------------------------QPNFPDAYNNLANALKDKGSV  336 (966)
T ss_pred             -----------------------------------------------------------CCCchHHHhHHHHHHHhccch
Confidence                                                                       223333445577888888999


Q ss_pred             hHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHh
Q 006615          387 ETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD  466 (638)
Q Consensus       387 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  466 (638)
                      .+|.+.|.....-..  ......+.|-..+...|.+++|..+|....+-... -...++.|...|-..|++++|+..|++
T Consensus       337 ~ea~~cYnkaL~l~p--~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~Yke  413 (966)
T KOG4626|consen  337 TEAVDCYNKALRLCP--NHADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKE  413 (966)
T ss_pred             HHHHHHHHHHHHhCC--ccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHH
Confidence            999999998765443  23456788999999999999999999988764322 236788899999999999999999999


Q ss_pred             chhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcc-hhhHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 006615          467 DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPD-VQTFSGLMYHFALQGDEKIVQKLFSMVRQNG  545 (638)
Q Consensus       467 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~  545 (638)
                      ..+.     +|+.+.+|+.+...|...|+.+.|.+.+.+.+..  .|. ...++.|...|-..|++.+|+.-+++..+  
T Consensus       414 alrI-----~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--  484 (966)
T KOG4626|consen  414 ALRI-----KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--  484 (966)
T ss_pred             HHhc-----CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--
Confidence            8764     7888899999999999999999999999999874  565 56789999999999999999999999886  


Q ss_pred             CCCC
Q 006615          546 VEPD  549 (638)
Q Consensus       546 ~~p~  549 (638)
                      ++||
T Consensus       485 lkPD  488 (966)
T KOG4626|consen  485 LKPD  488 (966)
T ss_pred             cCCC
Confidence            5677

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.80  E-value=1e-15  Score=163.87  Aligned_cols=331  Identities=12%  Similarity=0.037  Sum_probs=242.1

Q ss_pred             HHHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhc
Q 006615           71 IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTS  150 (638)
Q Consensus        71 ~~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~  150 (638)
                      .++..+.+.|+++.|+.+++.......-.  ...+..++.++...|+++.|...++++.+.. +.+...+..+...+.+.
T Consensus        47 ~~~~~~~~~g~~~~A~~l~~~~l~~~p~~--~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~  123 (656)
T PRK15174         47 LFAIACLRKDETDVGLTLLSDRVLTAKNG--RDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKS  123 (656)
T ss_pred             HHHHHHHhcCCcchhHHHhHHHHHhCCCc--hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHc
Confidence            36777889999999999999888654222  3356666677778999999999999998753 34556678888999999


Q ss_pred             CCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 006615          151 GDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF  230 (638)
Q Consensus       151 g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~  230 (638)
                      |++++|...+++..... +.+...+..+...+...|++++|...++.+...... +...+..+ ..+...|++++|...+
T Consensus       124 g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~  200 (656)
T PRK15174        124 KQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLA  200 (656)
T ss_pred             CCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHH
Confidence            99999999999998864 445778888999999999999999999988765322 23333333 3478899999999999


Q ss_pred             HhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHH----HHHHHHHhCcCc
Q 006615          231 SALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQG----ANEFLREMLPDK  306 (638)
Q Consensus       231 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~----a~~~~~~~~~~~  306 (638)
                      +.+.+..-.++...+..+...+.+.|++++|...+++............+.+...+...|++++    |...++..... 
T Consensus       201 ~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l-  279 (656)
T PRK15174        201 RALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF-  279 (656)
T ss_pred             HHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh-
Confidence            9877643223444556667888999999999999999987653333334467777888888875    56666655311 


Q ss_pred             cccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCCh
Q 006615          307 RIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSP  386 (638)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (638)
                                                                                                      
T Consensus       280 --------------------------------------------------------------------------------  279 (656)
T PRK15174        280 --------------------------------------------------------------------------------  279 (656)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHh
Q 006615          387 ETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD  466 (638)
Q Consensus       387 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  466 (638)
                                   .  +.+...+..+...+.+.|++++|...+++....... +...+..+..+|.+.|++++|...|+.
T Consensus       280 -------------~--P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~  343 (656)
T PRK15174        280 -------------N--SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQ  343 (656)
T ss_pred             -------------C--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence                         0  224556777777888888888888888887765433 445666677778888888888888877


Q ss_pred             chhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhC
Q 006615          467 DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFS  509 (638)
Q Consensus       467 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~  509 (638)
                      +...     .|+....+..+..++...|+.++|.+.|++..+.
T Consensus       344 al~~-----~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~  381 (656)
T PRK15174        344 LARE-----KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA  381 (656)
T ss_pred             HHHh-----CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            7654     2332233444556677888888888888887764

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.80  E-value=3.7e-15  Score=160.21  Aligned_cols=258  Identities=12%  Similarity=-0.025  Sum_probs=184.5

Q ss_pred             cCCHHHHHHHHHHHHhCC-CCCCHHH--HHHHHHHHHcCChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCCC
Q 006615          255 VERFDEAKSLLNEMRDDG-KFPGRAM--RVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSG  331 (638)
Q Consensus       255 ~g~~~~A~~l~~~m~~~g-~~p~~~~--~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (638)
                      .+++++|.+.|++....+ ..|+...  +.+...+...|++++|...++......                         
T Consensus       307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-------------------------  361 (615)
T TIGR00990       307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-------------------------  361 (615)
T ss_pred             hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------------------------
Confidence            467888888888887764 3444432  244566678888999988888764321                         


Q ss_pred             ccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHH
Q 006615          332 VRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEK  411 (638)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~  411 (638)
                                                         +.........+..+...|++++|...|+......  +.+...|..
T Consensus       362 -----------------------------------P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--p~~~~~~~~  404 (615)
T TIGR00990       362 -----------------------------------PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN--SEDPDIYYH  404 (615)
T ss_pred             -----------------------------------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHH
Confidence                                               1111122345566667788888888888775443  335667888


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHH
Q 006615          412 MLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLT  491 (638)
Q Consensus       412 li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~  491 (638)
                      +...+...|++++|...|++....... +...+..+..++.+.|++++|...|++....     .|+....|+.+...+.
T Consensus       405 lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-----~P~~~~~~~~lg~~~~  478 (615)
T TIGR00990       405 RAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQYKEGSIASSMATFRRCKKN-----FPEAPDVYNYYGELLL  478 (615)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHH
Confidence            888899999999999999998876533 5667777888888999999999999987764     3343467888888999


Q ss_pred             ccCChHHHHHHHHHHHhCCCCcchh------hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHHhh
Q 006615          492 KCKRDFDAINVLEEMIFSGIVPDVQ------TFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLS  565 (638)
Q Consensus       492 ~~g~~~~A~~l~~~m~~~g~~p~~~------t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~m~  565 (638)
                      ..|++++|++.|++..+..-..+..      .++..+..+...|++++|.+++++.....  |+                
T Consensus       479 ~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~--p~----------------  540 (615)
T TIGR00990       479 DQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID--PE----------------  540 (615)
T ss_pred             HccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC--CC----------------
Confidence            9999999999999987752111111      12222233444689999999998877642  33                


Q ss_pred             hCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHccC
Q 006615          566 NSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKIND  604 (638)
Q Consensus       566 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~  604 (638)
                            +...+..+...+.+.|++++|.+.+++..+...
T Consensus       541 ------~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~  573 (615)
T TIGR00990       541 ------CDIAVATMAQLLLQQGDVDEALKLFERAAELAR  573 (615)
T ss_pred             ------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhc
Confidence                  344678899999999999999999999887654

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.79  E-value=7.9e-15  Score=157.72  Aligned_cols=402  Identities=10%  Similarity=-0.053  Sum_probs=271.9

Q ss_pred             HHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCC
Q 006615           73 THALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGD  152 (638)
Q Consensus        73 ~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~  152 (638)
                      ...+.+.|++++|+..|+.....   .|+...|..+..++.+.|++++|...++...+.. +.+...|..+..+|...|+
T Consensus       134 G~~~~~~~~~~~Ai~~y~~al~~---~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~  209 (615)
T TIGR00990       134 GNKAYRNKDFNKAIKLYSKAIEC---KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGK  209 (615)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCC
Confidence            45667889999999999998854   4667788888889999999999999999988753 3455678889999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHH-------------------------c--CCCC
Q 006615          153 LELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVID-------------------------E--GAIP  205 (638)
Q Consensus       153 ~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------------------------~--g~~p  205 (638)
                      +++|..-|......+-. +......++.-+........+.+.++.-..                         .  ...|
T Consensus       210 ~~eA~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (615)
T TIGR00990       210 YADALLDLTASCIIDGF-RNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDE  288 (615)
T ss_pred             HHHHHHHHHHHHHhCCC-ccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccccc
Confidence            99999888766543211 111111111111110001111111110000                         0  0000


Q ss_pred             C-HHHHHHHHHH---HHHcCCHHHHHHHHHhcccCC-Ccc-CHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH
Q 006615          206 N-SRTYTVMIEH---LVNLGKLDSALEVFSALPLMR-IKR-TSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM  279 (638)
Q Consensus       206 ~-~~ty~~li~~---~~~~g~~~~A~~~~~~m~~~g-~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~  279 (638)
                      + ...+..+...   ....+++++|.+.|+...+.+ ..| +...|+.+...+...|++++|+..|++...........+
T Consensus       289 ~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~  368 (615)
T TIGR00990       289 ETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSY  368 (615)
T ss_pred             ccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH
Confidence            0 0000000000   012367889999999887654 233 456788888888889999999999999877543322334


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHH
Q 006615          280 RVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPE  359 (638)
Q Consensus       280 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (638)
                      +.+...+...|++++|...++.......                                                    
T Consensus       369 ~~la~~~~~~g~~~eA~~~~~~al~~~p----------------------------------------------------  396 (615)
T TIGR00990       369 IKRASMNLELGDPDKAEEDFDKALKLNS----------------------------------------------------  396 (615)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCC----------------------------------------------------
Confidence            4666778889999999999988743210                                                    


Q ss_pred             HHHHhhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 006615          360 VVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRL  439 (638)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~  439 (638)
                              .........+.++...|++++|...|.......  +.+...+..+..++.+.|++++|...|+....... -
T Consensus       397 --------~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~--P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P-~  465 (615)
T TIGR00990       397 --------EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD--PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFP-E  465 (615)
T ss_pred             --------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-C
Confidence                    001112335666777899999999999886443  33566788888899999999999999999887543 2


Q ss_pred             CHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcc--hhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcc-hh
Q 006615          440 PFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISK--FKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPD-VQ  516 (638)
Q Consensus       440 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~  516 (638)
                      +...++.+...+...|++++|...|+...+..+....  .+....++..+..+...|++++|.+++++..+..  |+ ..
T Consensus       466 ~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~--p~~~~  543 (615)
T TIGR00990       466 APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID--PECDI  543 (615)
T ss_pred             ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC--CCcHH
Confidence            5788889999999999999999999998765332111  1111223333444455799999999999988753  44 45


Q ss_pred             hHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006615          517 TFSGLMYHFALQGDEKIVQKLFSMVRQN  544 (638)
Q Consensus       517 t~~~li~~~~~~g~~~~a~~l~~~m~~~  544 (638)
                      .+..+...+...|++++|.+.|++..+.
T Consensus       544 a~~~la~~~~~~g~~~eAi~~~e~A~~l  571 (615)
T TIGR00990       544 AVATMAQLLLQQGDVDEALKLFERAAEL  571 (615)
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            7889999999999999999999998765

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.79  E-value=3.3e-15  Score=160.00  Aligned_cols=378  Identities=12%  Similarity=0.011  Sum_probs=277.4

Q ss_pred             HHcCCChhHHHHHHHHHHcCCCCC-CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHH
Q 006615           76 LRSAPNADSALSIMEALKSNPNFS-HNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLE  154 (638)
Q Consensus        76 l~~~~~~~~Al~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~  154 (638)
                      +.+..+++..--.|....++..-. -+....-.++..+.+.|+++.|..+++........ +...+..++.+....|+++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~   93 (656)
T PRK15174         15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPD   93 (656)
T ss_pred             hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHH
Confidence            334445554444444443221111 12223556777788899999999999988876433 3444556667777899999


Q ss_pred             HHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhc
Q 006615          155 LVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIP-NSRTYTVMIEHLVNLGKLDSALEVFSAL  233 (638)
Q Consensus       155 ~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~~~~~m  233 (638)
                      .|...|+++.... +.+...|..+...+.+.|++++|.+.|++..+.  .| +...+..+...+...|+.++|...++.+
T Consensus        94 ~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~  170 (656)
T PRK15174         94 AVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQ  170 (656)
T ss_pred             HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence            9999999998875 456777888889999999999999999999884  45 4667888889999999999999999877


Q ss_pred             ccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHcCChHHHHHHHHHhCcCccccccc
Q 006615          234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMR-VALERMQEMGFIQGANEFLREMLPDKRIKNVR  312 (638)
Q Consensus       234 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  312 (638)
                      ....- .+...+..+ ..+...|++++|...++.+.+....++.... .+...+...|++++|...++.....       
T Consensus       171 ~~~~P-~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~-------  241 (656)
T PRK15174        171 AQEVP-PRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR-------  241 (656)
T ss_pred             HHhCC-CCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc-------
Confidence            65421 223334333 3478889999999999998776543333333 4456777888888888888776321       


Q ss_pred             cccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChhHHHHH
Q 006615          313 YYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHF  392 (638)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~  392 (638)
                                                                                                      
T Consensus       242 --------------------------------------------------------------------------------  241 (656)
T PRK15174        242 --------------------------------------------------------------------------------  241 (656)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHhcCCCCcCCHHHHHHHHHHHHhcCChHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhch
Q 006615          393 FCWVAYQPGYTHDVYALEKMLTILARHGHVEL----VDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDR  468 (638)
Q Consensus       393 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~----a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~  468 (638)
                             .  +.+...+..+...+...|++++    |...|++....... +...+..+...+.+.|++++|...+++..
T Consensus       242 -------~--p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al  311 (656)
T PRK15174        242 -------G--LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSL  311 (656)
T ss_pred             -------C--CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence                   1  2256667788889999999985    89999999876543 66788999999999999999999999988


Q ss_pred             hccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhh-HHHHHHHHHccCCHHHHHHHHHHHHhCCCC
Q 006615          469 TLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQT-FSGLMYHFALQGDEKIVQKLFSMVRQNGVE  547 (638)
Q Consensus       469 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~li~~~~~~g~~~~a~~l~~~m~~~~~~  547 (638)
                      +.     .|+....+..+...+.+.|++++|++.|+++.+.  .|+... +..+..++...|+.++|...|++..+..-.
T Consensus       312 ~l-----~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~  384 (656)
T PRK15174        312 AT-----HPDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS  384 (656)
T ss_pred             Hh-----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence            75     3444467888899999999999999999999875  466544 344567889999999999999998875322


Q ss_pred             CCHhhHHHHHHHHHHH
Q 006615          548 PDAYMFKVLIQAYCKY  563 (638)
Q Consensus       548 p~~~~~~~li~~~~~~  563 (638)
                      --...|...+..|.+.
T Consensus       385 ~~~~~~~ea~~~~~~~  400 (656)
T PRK15174        385 HLPQSFEEGLLALDGQ  400 (656)
T ss_pred             hchhhHHHHHHHHHHH
Confidence            1244555566666655

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.78  E-value=1.8e-14  Score=157.74  Aligned_cols=223  Identities=13%  Similarity=0.086  Sum_probs=162.6

Q ss_pred             HHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcC
Q 006615           72 VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSG  151 (638)
Q Consensus        72 ~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g  151 (638)
                      .+.+....|+.++|+++|.......  ..+...+..+..++...|++++|..++++..+.. +.+...+..+...+...|
T Consensus        21 ~~~ia~~~g~~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g   97 (765)
T PRK10049         21 WLQIALWAGQDAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAG   97 (765)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCC
Confidence            5677889999999999999987532  3344468889999999999999999999988753 344566778888999999


Q ss_pred             CHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Q 006615          152 DLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIP-NSRTYTVMIEHLVNLGKLDSALEVF  230 (638)
Q Consensus       152 ~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~~~  230 (638)
                      ++++|...+++..+.. +.+.. +..+..++...|+.++|+..+++..+.  .| +...+..+...+...|..+.|.+.+
T Consensus        98 ~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~~~~~~~~la~~l~~~~~~e~Al~~l  173 (765)
T PRK10049         98 QYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQTQQYPTEYVQALRNNRLSAPALGAI  173 (765)
T ss_pred             CHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCChHHHHHHH
Confidence            9999999999998874 45566 888888999999999999999999985  44 4555666777888889999999999


Q ss_pred             HhcccCCCccCH------hHHHHHHHHHH-----ccCCH---HHHHHHHHHHHhC-CCCCCHH--HH----HHHHHHHHc
Q 006615          231 SALPLMRIKRTS------KQYLILVEGFV-----GVERF---DEAKSLLNEMRDD-GKFPGRA--MR----VALERMQEM  289 (638)
Q Consensus       231 ~~m~~~g~~p~~------~~~~~li~~~~-----~~g~~---~~A~~l~~~m~~~-g~~p~~~--~~----~ll~~~~~~  289 (638)
                      +....   .|+.      .....++....     ..+++   ++|++.++.+... ...|+..  ..    ..+..+...
T Consensus       174 ~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~  250 (765)
T PRK10049        174 DDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLAR  250 (765)
T ss_pred             HhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHh
Confidence            87774   3332      11222233222     22334   7788888888754 2333221  11    113445666


Q ss_pred             CChHHHHHHHHHhCc
Q 006615          290 GFIQGANEFLREMLP  304 (638)
Q Consensus       290 g~~~~a~~~~~~~~~  304 (638)
                      |++++|...|+.+..
T Consensus       251 g~~~eA~~~~~~ll~  265 (765)
T PRK10049        251 DRYKDVISEYQRLKA  265 (765)
T ss_pred             hhHHHHHHHHHHhhc
Confidence            888888888877743

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.78  E-value=4.1e-15  Score=138.56  Aligned_cols=347  Identities=12%  Similarity=0.096  Sum_probs=225.7

Q ss_pred             CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHH
Q 006615          170 LSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILV  249 (638)
Q Consensus       170 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li  249 (638)
                      -+..+|.+||.++|+--..+.|.++|++-.....+.+..+||.+|.+-.-..    ..+++.+|.+..+.||..|+|+++
T Consensus       205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNalL  280 (625)
T KOG4422|consen  205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNALL  280 (625)
T ss_pred             CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHHH
Confidence            3467999999999999999999999999998888889999999998654322    278889999988999999999999


Q ss_pred             HHHHccCCHHH----HHHHHHHHHhCCCCCCHHHH-HHHHHHHHcCChHH-HHHHHHHhCcCccccccccccCCCCCccc
Q 006615          250 EGFVGVERFDE----AKSLLNEMRDDGKFPGRAMR-VALERMQEMGFIQG-ANEFLREMLPDKRIKNVRYYEDGSDDDED  323 (638)
Q Consensus       250 ~~~~~~g~~~~----A~~l~~~m~~~g~~p~~~~~-~ll~~~~~~g~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (638)
                      ++.++.|+++.    |.+++.+|++-|+.|...+| .+|..+++.++..+ +..++.+++.+-.                
T Consensus       281 ~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~lt----------------  344 (625)
T KOG4422|consen  281 SCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLT----------------  344 (625)
T ss_pred             HHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhc----------------
Confidence            99999998765    56788999999999999887 66777777766544 3444444421100                


Q ss_pred             cccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCCc
Q 006615          324 ENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYT  403 (638)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  403 (638)
                                                                                  |+           .-+..-+
T Consensus       345 ------------------------------------------------------------GK-----------~fkp~~p  353 (625)
T KOG4422|consen  345 ------------------------------------------------------------GK-----------TFKPITP  353 (625)
T ss_pred             ------------------------------------------------------------cC-----------cccCCCC
Confidence                                                                        00           0011112


Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC----CCCC---HHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcc
Q 006615          404 HDVYALEKMLTILARHGHVELVDRLIAKLRSDG----MRLP---FSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISK  476 (638)
Q Consensus       404 p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g----~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~  476 (638)
                      .|...|..-+..|.+..+.+.|..+..-+....    +.|+   ..-|..+..+.|.....+.-...|+.|...   ..-
T Consensus       354 ~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~---~y~  430 (625)
T KOG4422|consen  354 TDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPS---AYF  430 (625)
T ss_pred             chhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---eec
Confidence            355678888899999999999988877665321    2222   123445555566666666666666665432   222


Q ss_pred             hhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHh---hH
Q 006615          477 FKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAY---MF  553 (638)
Q Consensus       477 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~---~~  553 (638)
                      |+. .+...++.+.--.|+++-.-+++.+|+..|..-+.                +-..+++..|.+....|+..   -+
T Consensus       431 p~~-~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~----------------~l~eeil~~L~~~k~hp~tp~r~Ql  493 (625)
T KOG4422|consen  431 PHS-QTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRS----------------DLREEILMLLARDKLHPLTPEREQL  493 (625)
T ss_pred             CCc-hhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhH----------------HHHHHHHHHHhcCCCCCCChHHHHH
Confidence            221 34455556666666666666666666665432221                11223333333333333322   22


Q ss_pred             HHHHHHHHHH-----------hhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHccCCCCcccccceeee-----
Q 006615          554 KVLIQAYCKY-----------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLALRGHIWAV-----  617 (638)
Q Consensus       554 ~~li~~~~~~-----------m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~w~~-----  617 (638)
                      .....-|+-.           |.+..+.|  ...+...-.+.|.|+.++|.+++..+...+.+.|..|..++...     
T Consensus       494 ~~~~ak~aad~~e~~e~~~~R~r~~~~~~--t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a  571 (625)
T KOG4422|consen  494 QVAFAKCAADIKEAYESQPIRQRAQDWPA--TSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSA  571 (625)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHhccCCh--hHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHH
Confidence            2222222221           44444444  45677778889999999999999999888888888887775322     


Q ss_pred             -eccccchhcccc
Q 006615          618 -SSADLTRVHSIY  629 (638)
Q Consensus       618 -~~~~~~~~~~~~  629 (638)
                       .+++...|+..+
T Consensus       572 ~~~~spsqA~~~l  584 (625)
T KOG4422|consen  572 KVSNSPSQAIEVL  584 (625)
T ss_pred             HhcCCHHHHHHHH
Confidence             455555554433

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.77  E-value=2.8e-14  Score=133.15  Aligned_cols=412  Identities=11%  Similarity=0.119  Sum_probs=282.8

Q ss_pred             HHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCC--hHHH-HHHHHHHHhCC------------------
Q 006615           74 HALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQR--NHEL-KTLIGDISSSK------------------  132 (638)
Q Consensus        74 ~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~a-~~l~~~~~~~~------------------  132 (638)
                      .-+...|.+..+.-+|+.|.+. +...+...-..+++..+-.+.  +.-+ ++.|-.|.+.|                  
T Consensus       123 ~kmIS~~EvKDs~ilY~~m~~e-~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E  201 (625)
T KOG4422|consen  123 LKMISSREVKDSCILYERMRSE-NVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFE  201 (625)
T ss_pred             HHHHhhcccchhHHHHHHHHhc-CCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHh
Confidence            3456789999999999999977 455566566666665443222  1111 22222232211                  


Q ss_pred             -CCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 006615          133 -FLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYT  211 (638)
Q Consensus       133 -~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~  211 (638)
                       .+.+..++..+|.+.|+.-..+.|.+++++-.....+.+..+||.+|.+-.-.    ...+++.+|....+.||..|||
T Consensus       202 ~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfN  277 (625)
T KOG4422|consen  202 TLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFN  277 (625)
T ss_pred             hcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHH
Confidence             24456789999999999999999999999999888899999999999874332    2278999999999999999999


Q ss_pred             HHHHHHHHcCCHHH----HHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHH-HHHHHHHHH----hCCCC---CCH-H
Q 006615          212 VMIEHLVNLGKLDS----ALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDE-AKSLLNEMR----DDGKF---PGR-A  278 (638)
Q Consensus       212 ~li~~~~~~g~~~~----A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-A~~l~~~m~----~~g~~---p~~-~  278 (638)
                      +++++..+.|+++.    |.+++.+|++.|++|...+|..+|.-+++.++..+ |..++.++.    ...+.   |+. .
T Consensus       278 alL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~  357 (625)
T KOG4422|consen  278 ALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNK  357 (625)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhH
Confidence            99999999998765    46788899999999999999999999999888744 444444443    23333   333 3


Q ss_pred             HH-HHHHHHHHcCChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCC
Q 006615          279 MR-VALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWS  357 (638)
Q Consensus       279 ~~-~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (638)
                      ++ +.+..|....+.+-|.++..-+.....-                                             ..+.
T Consensus       358 FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~---------------------------------------------~~ig  392 (625)
T KOG4422|consen  358 FFQSAMSICSSLRDLELAYQVHGLLKTGDNW---------------------------------------------KFIG  392 (625)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHcCCch---------------------------------------------hhcC
Confidence            34 7788888888988888877655322110                                             0000


Q ss_pred             HHHHHHhhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 006615          358 PEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGM  437 (638)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~  437 (638)
                      ++...       ...+.-+..+++...+.+.-..+|+.+ ..+-+-|+..+...++++..-.|.++-..+++.+++..|.
T Consensus       393 ~~~~~-------~fYyr~~~~licq~es~~~~~~~Y~~l-VP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~gh  464 (625)
T KOG4422|consen  393 PDQHR-------NFYYRKFFDLICQMESIDVTLKWYEDL-VPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGH  464 (625)
T ss_pred             hHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHh-ccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhh
Confidence            00000       011222344555567778888888887 5667788999999999999999999999999999999887


Q ss_pred             CCCHHHHHHHHHHHcccC-C---H-----HH-----HHHHHHhchh---ccCCCcchhHHHHHHHHHHHHHccCChHHHH
Q 006615          438 RLPFSTIRLIIDFYGISK-K---A-----DA-----ALKAFHDDRT---LCGPISKFKLMLLYSSLLRTLTKCKRDFDAI  500 (638)
Q Consensus       438 ~~~~~~~~~li~~~~~~g-~---~-----~~-----A~~~~~~~~~---~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~  500 (638)
                      ..+...---++...++.. +   .     ..     |..+++....   .......|  ....+.+.-.+.+.|+.++|.
T Consensus       465 t~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~--~t~l~~ia~Ll~R~G~~qkA~  542 (625)
T KOG4422|consen  465 TFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWP--ATSLNCIAILLLRAGRTQKAW  542 (625)
T ss_pred             hhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCC--hhHHHHHHHHHHHcchHHHHH
Confidence            666655555555555443 1   1     11     1111111000   00011122  245677777889999999999


Q ss_pred             HHHHHHHhCCC----CcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 006615          501 NVLEEMIFSGI----VPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNG  545 (638)
Q Consensus       501 ~l~~~m~~~g~----~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~  545 (638)
                      ++|.-..+.|-    .|......-++.+-....+...|...++-|...+
T Consensus       543 e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n  591 (625)
T KOG4422|consen  543 EMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN  591 (625)
T ss_pred             HHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence            99998866542    2334444466777778888899999998887654

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.75  E-value=2e-13  Score=146.67  Aligned_cols=447  Identities=10%  Similarity=0.013  Sum_probs=305.4

Q ss_pred             HHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcC
Q 006615           72 VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSG  151 (638)
Q Consensus        72 ~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g  151 (638)
                      -.-...+.|+++.|+..|+.+.+.....+ ...+ .++..+...|+.++|...+++.... ..........+...|...|
T Consensus        40 ~aii~~r~Gd~~~Al~~L~qaL~~~P~~~-~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~g  116 (822)
T PRK14574         40 SLIIRARAGDTAPVLDYLQEESKAGPLQS-GQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEK  116 (822)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhhCccch-hhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcC
Confidence            34456789999999999999986542221 1233 8888888999999999999998821 1222333334466888889


Q ss_pred             CHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006615          152 DLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFS  231 (638)
Q Consensus       152 ~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~  231 (638)
                      ++++|.++|+++.+.. +-+...+..++..+...++.++|++.++++...  .|+...+-.++..+...++..+|.+.++
T Consensus       117 dyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~e  193 (822)
T PRK14574        117 RWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASS  193 (822)
T ss_pred             CHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHH
Confidence            9999999999999875 445677778888899999999999999999884  5676666555444445666766999999


Q ss_pred             hcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH-HHH--HHHHHHHH---------cCChHHHHHHH
Q 006615          232 ALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMR--VALERMQE---------MGFIQGANEFL  299 (638)
Q Consensus       232 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~~~--~ll~~~~~---------~g~~~~a~~~~  299 (638)
                      ++.+.. +-+...+..++.++.+.|-...|.++..+-... +.+.. ...  ..+....+         ..++..+.+.+
T Consensus       194 kll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~al  271 (822)
T PRK14574        194 EAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKAL  271 (822)
T ss_pred             HHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHH
Confidence            998763 235677788999999999999999877653211 11111 110  01111111         11222222222


Q ss_pred             HHhCcCccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchH--HHH
Q 006615          300 REMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTR--LVC  377 (638)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  377 (638)
                      .++..                                               .+..+.     ...+....+...  --.
T Consensus       272 a~~~~-----------------------------------------------l~~~~~-----~~p~~~~~~~~~~~Drl  299 (822)
T PRK14574        272 ADYQN-----------------------------------------------LLTRWG-----KDPEAQADYQRARIDRL  299 (822)
T ss_pred             HHHHH-----------------------------------------------HHhhcc-----CCCccchHHHHHHHHHH
Confidence            22210                                               000000     000000000000  112


Q ss_pred             HHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHc
Q 006615          378 KVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDG-----MRLPFSTIRLIIDFYG  452 (638)
Q Consensus       378 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g-----~~~~~~~~~~li~~~~  452 (638)
                      .++...+++.++++.|+.+. ..+.+.-..+-..+.++|...+++++|..+++.+....     ..++......|.-+|.
T Consensus       300 ~aL~~r~r~~~vi~~y~~l~-~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~l  378 (822)
T PRK14574        300 GALLVRHQTADLIKEYEAME-AEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLN  378 (822)
T ss_pred             HHHHHhhhHHHHHHHHHHhh-hcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHH
Confidence            34556788999999999884 44433334467788999999999999999999987643     1234444678899999


Q ss_pred             ccCCHHHHHHHHHhchhccC----------CCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHH
Q 006615          453 ISKKADAALKAFHDDRTLCG----------PISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLM  522 (638)
Q Consensus       453 ~~g~~~~A~~~~~~~~~~~~----------~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li  522 (638)
                      ..+++++|..+++.+.+..+          ..+.|+-...+..++..+.-.|+..+|++.++++.... +-|......+.
T Consensus       379 d~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A  457 (822)
T PRK14574        379 ESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALA  457 (822)
T ss_pred             hcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence            99999999999999887433          24566655666777888999999999999999997753 34778888889


Q ss_pred             HHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHc
Q 006615          523 YHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKI  602 (638)
Q Consensus       523 ~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~  602 (638)
                      ..+...|.+.+|++.++.....  .|+                      +..+......++...|+|.+|.++.+...+.
T Consensus       458 ~v~~~Rg~p~~A~~~~k~a~~l--~P~----------------------~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~  513 (822)
T PRK14574        458 SIYLARDLPRKAEQELKAVESL--APR----------------------SLILERAQAETAMALQEWHQMELLTDDVISR  513 (822)
T ss_pred             HHHHhcCCHHHHHHHHHHHhhh--CCc----------------------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence            9999999999999999777754  444                      3344455666666778888888777776665


Q ss_pred             cC
Q 006615          603 ND  604 (638)
Q Consensus       603 ~~  604 (638)
                      .+
T Consensus       514 ~P  515 (822)
T PRK14574        514 SP  515 (822)
T ss_pred             CC
Confidence            54

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.72  E-value=5.7e-13  Score=146.18  Aligned_cols=210  Identities=11%  Similarity=0.043  Sum_probs=154.2

Q ss_pred             cCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHH
Q 006615           78 SAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVL  157 (638)
Q Consensus        78 ~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~  157 (638)
                      ..|++++|+..|+.+.+..+  -+..++..+..++...|+.++|+...++..+..  |+...|..++..+   ++.++|.
T Consensus        56 ~~Gd~~~A~~~l~~Al~~dP--~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~i---~~~~kA~  128 (987)
T PRK09782         56 KNNDEATAIREFEYIHQQVP--DNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLAAI---PVEVKSV  128 (987)
T ss_pred             hCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHh---ccChhHH
Confidence            44999999999999986642  235678999999999999999999999998864  4444344434322   9999999


Q ss_pred             HHHHHHHhcCCCCCHHhHHHHHHH--------HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHHcCCHHHHHH
Q 006615          158 STWNEYRQRAKLLSTESYNIVMSV--------YAKTGKNFEAVETFRQVIDEGAIPNSRTYTVM-IEHLVNLGKLDSALE  228 (638)
Q Consensus       158 ~l~~~m~~~~~~p~~~~~~~li~~--------~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~l-i~~~~~~g~~~~A~~  228 (638)
                      .+++++.... +-+..++..+...        |.+.   +.|.+.++ .......|+..+.... .+.|.+.|++++|.+
T Consensus       129 ~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~  203 (987)
T PRK09782        129 TTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADT  203 (987)
T ss_pred             HHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHH
Confidence            9999999875 3345566555555        5555   55555555 3333344456655655 899999999999999


Q ss_pred             HHHhcccCCCccCHhHHHHHHHHHHc-cCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHcCChHHHHHHHHHhCcC
Q 006615          229 VFSALPLMRIKRTSKQYLILVEGFVG-VERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREMLPD  305 (638)
Q Consensus       229 ~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~A~~l~~~m~~~g~~p~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~  305 (638)
                      ++.++.+.+. .+..-...|-.+|.. .++ +++..+++.    .+.-+... ..+...+.+.|+.++|.++++++.+.
T Consensus       204 lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~  276 (987)
T PRK09782        204 LYNEARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPL  276 (987)
T ss_pred             HHHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCccc
Confidence            9999998763 345556777778887 466 888887553    23334444 47788999999999999999998654

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.72  E-value=1.5e-12  Score=142.93  Aligned_cols=529  Identities=11%  Similarity=0.011  Sum_probs=312.4

Q ss_pred             HHHHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHH---
Q 006615           70 FIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQW---  146 (638)
Q Consensus        70 ~~~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~---  146 (638)
                      +.+...|...|++++|+..+++..+..   |+...|..++..+   ++.++|..+++++.+.. +.+..++..+...   
T Consensus        82 ~~LA~~yl~~g~~~~A~~~~~kAv~ld---P~n~~~~~~La~i---~~~~kA~~~ye~l~~~~-P~n~~~~~~la~~~~~  154 (987)
T PRK09782         82 LYLAEAYRHFGHDDRARLLLEDQLKRH---PGDARLERSLAAI---PVEVKSVTTVEELLAQQ-KACDAVPTLRCRSEVG  154 (987)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhcC---cccHHHHHHHHHh---ccChhHHHHHHHHHHhC-CCChhHHHHHHHHhhc
Confidence            458889999999999999999998653   4444555544333   88899999999998764 2334445445554   


Q ss_pred             -----HHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHH-HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-
Q 006615          147 -----YSTSGDLELVLSTWNEYRQRAKLLSTESYNIV-MSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVN-  219 (638)
Q Consensus       147 -----~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~-  219 (638)
                           |.+.   ++|.+.++ .......|+..+.... ...|.+.|++++|++++.++.+.+.. +..-...|-..|.. 
T Consensus       155 ~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~  229 (987)
T PRK09782        155 QNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAG  229 (987)
T ss_pred             cchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHh
Confidence                 5555   55555555 3333333345444444 88999999999999999999997543 45556666677777 


Q ss_pred             cCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC-CCHHH-------------------
Q 006615          220 LGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKF-PGRAM-------------------  279 (638)
Q Consensus       220 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~~-------------------  279 (638)
                      .++ +++..+++.    .++-|...+..+...|.+.|+.++|.++++++...... |....                   
T Consensus       230 l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~  304 (987)
T PRK09782        230 QLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANY  304 (987)
T ss_pred             hCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccch
Confidence            466 788777553    23457888899999999999999999998887543222 11110                   


Q ss_pred             ------------HHHHHHHHHcCChHHHHHHHHHhCcCccccccccccC--------------------C----------
Q 006615          280 ------------RVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYED--------------------G----------  317 (638)
Q Consensus       280 ------------~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--------------------~----------  317 (638)
                                  ...+.-+.+.+.++.+.++.. ..+........+...                    .          
T Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~  383 (987)
T PRK09782        305 TVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA-TLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLT  383 (987)
T ss_pred             hhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc-CCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHH
Confidence                        011233444555554444422 111100000000000                    0          


Q ss_pred             ------CC--CccccccCCCC-C--cc-----c----cccccccCCCChhhHHH------------Hhh---cCC---HH
Q 006615          318 ------SD--DDEDENDDNNS-G--VR-----I----AYGVQLKPWLDPKALAN------------TLD---EWS---PE  359 (638)
Q Consensus       318 ------~~--~~~~~~~~~~~-~--~~-----~----~~~~~~~~~~~~~~~~~------------~~~---~~~---~~  359 (638)
                            +.  .++.-.+.... .  ..     +    .................            ...   ...   ..
T Consensus       384 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  463 (987)
T PRK09782        384 WQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPA  463 (987)
T ss_pred             HHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHH
Confidence                  00  00000000000 0  00     0    00000000000000000            000   000   11


Q ss_pred             HHHHhhc-CC--cccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 006615          360 VVSLLAD-AK--FVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDG  436 (638)
Q Consensus       360 ~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g  436 (638)
                      ....+.. +.  .......++..+.. +..++|...+......   .|+......+...+...|++++|...|+++... 
T Consensus       464 ~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~---~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~-  538 (987)
T PRK09782        464 IVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR---QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH-  538 (987)
T ss_pred             HHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh---CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc-
Confidence            1111111 11  11222334444444 7888888877766533   355544444455556899999999999987554 


Q ss_pred             CCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchh
Q 006615          437 MRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQ  516 (638)
Q Consensus       437 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~  516 (638)
                       .|+...+..+..++.+.|+.++|...++...+..     |+....+..+...+.+.|++++|.+.+++..+.  .|+..
T Consensus       539 -~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-----P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~  610 (987)
T PRK09782        539 -DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-----LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSAN  610 (987)
T ss_pred             -CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHH
Confidence             3344455666777888999999999998887652     222233444444555669999999999998875  57778


Q ss_pred             hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhh-HHHHHHHHHHH----------hhhCCCCCC-HHHHHHHHHHHh
Q 006615          517 TFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYM-FKVLIQAYCKY----------LSNSNLMPD-AATKELLKKSLW  584 (638)
Q Consensus       517 t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~-~~~li~~~~~~----------m~~~g~~p~-~~~~~~li~~~~  584 (638)
                      .|..+...+.+.|++++|...+++....  .|+... ++.+-..+...          -......|+ ...+..+..++.
T Consensus       611 a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~  688 (987)
T PRK09782        611 AYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQ  688 (987)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            8888889999999999999999998875  465443 33333334333          112234564 667889999999


Q ss_pred             ccCcHHHHHHHHHHHHHccCCCCcccccceeee-eccccchhcccccc
Q 006615          585 KEGRRKEAAAVEERCEKINDVPSLALRGHIWAV-SSADLTRVHSIYRN  631 (638)
Q Consensus       585 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~w~~-~~~~~~~~~~~~~~  631 (638)
                      ..|++++|+..+++..+..+......+...|.. ...+..++.+.|++
T Consensus       689 ~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r  736 (987)
T PRK09782        689 RLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGR  736 (987)
T ss_pred             HCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998765544444444444 22335555555444

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.70  E-value=5.4e-13  Score=146.27  Aligned_cols=417  Identities=8%  Similarity=-0.022  Sum_probs=301.2

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH
Q 006615          101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMS  180 (638)
Q Consensus       101 ~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~  180 (638)
                      ++....-.+.+....|+.++|.+++....... +.+...+..+...+.+.|++++|..+|++..+.. +.+...+..+..
T Consensus        14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~   91 (765)
T PRK10049         14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLIL   91 (765)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            34456677888889999999999999987622 4455568899999999999999999999988764 455777888889


Q ss_pred             HHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCcc-CHhHHHHHHHHHHccCCH
Q 006615          181 VYAKTGKNFEAVETFRQVIDEGAIP-NSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKR-TSKQYLILVEGFVGVERF  258 (638)
Q Consensus       181 ~~~~~g~~~~A~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~  258 (638)
                      .+.+.|++++|...+++..+.  .| +.. +..+...+...|+.++|...++++.+.  .| +...+..+...+...|..
T Consensus        92 ~l~~~g~~~eA~~~l~~~l~~--~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~~~~~~~~la~~l~~~~~~  166 (765)
T PRK10049         92 TLADAGQYDEALVKAKQLVSG--APDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQTQQYPTEYVQALRNNRLS  166 (765)
T ss_pred             HHHHCCCHHHHHHHHHHHHHh--CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCh
Confidence            999999999999999999886  34 455 888888999999999999999999875  34 455667788888899999


Q ss_pred             HHHHHHHHHHHhCCCCCCH-------HHHHHHHHH-----HHcCCh---HHHHHHHHHhCcC-ccccccccccCCCCCcc
Q 006615          259 DEAKSLLNEMRDDGKFPGR-------AMRVALERM-----QEMGFI---QGANEFLREMLPD-KRIKNVRYYEDGSDDDE  322 (638)
Q Consensus       259 ~~A~~l~~~m~~~g~~p~~-------~~~~ll~~~-----~~~g~~---~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~  322 (638)
                      ++|++.+++...   .|+.       .....+...     ...+++   ++|.+.++.+... ...|...          
T Consensus       167 e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~----------  233 (765)
T PRK10049        167 APALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDAT----------  233 (765)
T ss_pred             HHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccc----------
Confidence            999999987654   3332       111122211     112233   5566666665421 0000000          


Q ss_pred             ccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHH-HHHHHhccCChhHHHHHHHHHhcCCC
Q 006615          323 DENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRL-VCKVLRHFKSPETAWHFFCWVAYQPG  401 (638)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~  401 (638)
                                                         +         ........ ++ .+...+++++|...|+.+.....
T Consensus       234 -----------------------------------~---------~~~~a~~d~l~-~Ll~~g~~~eA~~~~~~ll~~~~  268 (765)
T PRK10049        234 -----------------------------------A---------DYQRARIDRLG-ALLARDRYKDVISEYQRLKAEGQ  268 (765)
T ss_pred             -----------------------------------h---------HHHHHHHHHHH-HHHHhhhHHHHHHHHHHhhccCC
Confidence                                               0         00000000 22 23456899999999999865533


Q ss_pred             CcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHcccCCHHHHHHHHHhchhccCC-----
Q 006615          402 YTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRL---PFSTIRLIIDFYGISKKADAALKAFHDDRTLCGP-----  473 (638)
Q Consensus       402 ~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-----  473 (638)
                      -.|+... ..+..+|...|++++|..+|+.+.......   .......+..++...|++++|..+++.+....+.     
T Consensus       269 ~~P~~a~-~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~  347 (765)
T PRK10049        269 IIPPWAQ-RWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLY  347 (765)
T ss_pred             CCCHHHH-HHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeec
Confidence            2243322 224678999999999999999987654321   1345667777889999999999999998876421     


Q ss_pred             ---Ccchh--HHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 006615          474 ---ISKFK--LMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEP  548 (638)
Q Consensus       474 ---~~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p  548 (638)
                         ...|+  ....+..+...+...|+.++|+++++++.... +-+...+..+...+...|++++|++.+++....  .|
T Consensus       348 ~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~P  424 (765)
T PRK10049        348 GSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVL--EP  424 (765)
T ss_pred             CCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CC
Confidence               12233  12355677788899999999999999998762 335677888889999999999999999998874  34


Q ss_pred             CHhhHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHccCCCCc
Q 006615          549 DAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSL  608 (638)
Q Consensus       549 ~~~~~~~li~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~  608 (638)
                      +                      +...+..+...+.+.|++++|+++++++.+..+..|.
T Consensus       425 d----------------------~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~  462 (765)
T PRK10049        425 R----------------------NINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPG  462 (765)
T ss_pred             C----------------------ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Confidence            4                      3456667777888999999999999999998765543

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.70  E-value=2.1e-12  Score=138.90  Aligned_cols=419  Identities=13%  Similarity=0.061  Sum_probs=294.2

Q ss_pred             HHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHH
Q 006615          111 VLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE  190 (638)
Q Consensus       111 ~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~  190 (638)
                      ...+.|++..|...|++..+....-....+ .++..+...|+.++|+..+++..... .........+...+...|++++
T Consensus        43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd~  120 (822)
T PRK14574         43 IRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWDQ  120 (822)
T ss_pred             HHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHHH
Confidence            356899999999999999875422112344 88888999999999999999998332 2223333333567888899999


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006615          191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRD  270 (638)
Q Consensus       191 A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~  270 (638)
                      |+++|+++.+.... |...+..++..+...++.++|.+.++.+...  .|+...+-.++..+...++..+|++.++++.+
T Consensus       121 Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~  197 (822)
T PRK14574        121 ALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVR  197 (822)
T ss_pred             HHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            99999999986322 5677778888999999999999999999864  56666665454455456777679999999998


Q ss_pred             CCCCCCHHHHHHHHHHHHcCChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHH
Q 006615          271 DGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALA  350 (638)
Q Consensus       271 ~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (638)
                      .+..-.........++.+.|-...|.++.++-..- ..+..                             ..+++.....
T Consensus       198 ~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~-----------------------------~~~l~~~~~a  247 (822)
T PRK14574        198 LAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEH-----------------------------YRQLERDAAA  247 (822)
T ss_pred             hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHH-----------------------------HHHHHHHHHH
Confidence            76443344557788899999999999888764210 00000                             0001111111


Q ss_pred             HHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCH-----HHHHHHHHHHHhcCChHHH
Q 006615          351 NTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDV-----YALEKMLTILARHGHVELV  425 (638)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-----~~~~~li~~~~~~g~~~~a  425 (638)
                      ..++.-            ...+..    .-......+.|+.-++.+...-+-.|..     ...-..+-++...|++.++
T Consensus       248 ~~vr~a------------~~~~~~----~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~v  311 (822)
T PRK14574        248 EQVRMA------------VLPTRS----ETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADL  311 (822)
T ss_pred             HHHhhc------------cccccc----chhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHH
Confidence            111110            000000    0001123455666666655433333432     2234567788999999999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCC-cchhHHHHHHHHHHHHHccCChHHHHHHHH
Q 006615          426 DRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPI-SKFKLMLLYSSLLRTLTKCKRDFDAINVLE  504 (638)
Q Consensus       426 ~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~l~~  504 (638)
                      .+.++.+...|......+-..+.++|...+++++|..+|+.+....+.. ..+........|.-+|...+++++|.++++
T Consensus       312 i~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~  391 (822)
T PRK14574        312 IKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAV  391 (822)
T ss_pred             HHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHH
Confidence            9999999999987677888999999999999999999999986543211 122223445788999999999999999999


Q ss_pred             HHHhCC-------------CCcchh-hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHHhhhCCCC
Q 006615          505 EMIFSG-------------IVPDVQ-TFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLM  570 (638)
Q Consensus       505 ~m~~~g-------------~~p~~~-t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~m~~~g~~  570 (638)
                      .+.+.-             ..||-. .+..++..+.-.|++.+|++.++++....  |.                     
T Consensus       392 ~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a--P~---------------------  448 (822)
T PRK14574        392 NYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA--PA---------------------  448 (822)
T ss_pred             HHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC---------------------
Confidence            998831             112222 23455678899999999999999998753  32                     


Q ss_pred             CCHHHHHHHHHHHhccCcHHHHHHHHHHHHHccC
Q 006615          571 PDAATKELLKKSLWKEGRRKEAAAVEERCEKIND  604 (638)
Q Consensus       571 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~  604 (638)
                       |......+.+.+...|...+|++.++......+
T Consensus       449 -n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P  481 (822)
T PRK14574        449 -NQNLRIALASIYLARDLPRKAEQELKAVESLAP  481 (822)
T ss_pred             -CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCC
Confidence             677778899999999999999999988877654

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.64  E-value=5.3e-12  Score=130.01  Aligned_cols=206  Identities=9%  Similarity=0.050  Sum_probs=146.7

Q ss_pred             cccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCCHHHHHHH
Q 006615          369 FVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSD-GMRLPFSTIRLI  447 (638)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-g~~~~~~~~~~l  447 (638)
                      ++-..+-++.+....+...+|..++...+......|++.++  +-..+.+...+..|.+=|....+. ...+|..+.-+|
T Consensus       529 YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl--~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaL  606 (1018)
T KOG2002|consen  529 YIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSL--LGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIAL  606 (1018)
T ss_pred             hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHH--HHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHh
Confidence            33333444555566788889999999988777666666544  444566777777787766655433 223576666666


Q ss_pred             HHHHcc------------cCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcch
Q 006615          448 IDFYGI------------SKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDV  515 (638)
Q Consensus       448 i~~~~~------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~  515 (638)
                      .+.|..            .+..++|+++|..+.+.     .|.+..+-|-+.-.++.+|++.+|..+|....+... -+.
T Consensus       607 GN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~-----dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~  680 (1018)
T KOG2002|consen  607 GNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN-----DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFE  680 (1018)
T ss_pred             hHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhc-----CcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCC
Confidence            665432            23577888888877654     444456677788889999999999999999998754 255


Q ss_pred             hhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 006615          516 QTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAV  595 (638)
Q Consensus       516 ~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~  595 (638)
                      .+|-.+..+|...|++..|+++|+...+.-..                      .-+......|..++.+.|.+.+|.+.
T Consensus       681 dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~----------------------~~~~~vl~~Lara~y~~~~~~eak~~  738 (1018)
T KOG2002|consen  681 DVWLNLAHCYVEQGQYRLAIQMYENCLKKFYK----------------------KNRSEVLHYLARAWYEAGKLQEAKEA  738 (1018)
T ss_pred             ceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcc----------------------cCCHHHHHHHHHHHHHhhhHHHHHHH
Confidence            67888999999999999999999887654222                      22455667788888888888888888


Q ss_pred             HHHHHHccC
Q 006615          596 EERCEKIND  604 (638)
Q Consensus       596 ~~~~~~~~~  604 (638)
                      ........+
T Consensus       739 ll~a~~~~p  747 (1018)
T KOG2002|consen  739 LLKARHLAP  747 (1018)
T ss_pred             HHHHHHhCC
Confidence            877766554

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.61  E-value=3.2e-11  Score=124.42  Aligned_cols=490  Identities=13%  Similarity=0.036  Sum_probs=327.5

Q ss_pred             CCCHHHHHHHHHcCCChhHHHHHHHHHHcCCCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHh--HHH
Q 006615           66 LLDPFIVTHALRSAPNADSALSIMEALKSNPNFSH-NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVN--FMN  142 (638)
Q Consensus        66 ~~~~~~~~~~l~~~~~~~~Al~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~--~~~  142 (638)
                      |.....+.+.+--.|+++.+..+...+.......+ -...|-.+.+++-..|+++.|...|.+-.+..  ++..+  +--
T Consensus       270 P~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~~G  347 (1018)
T KOG2002|consen  270 PVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLPLVG  347 (1018)
T ss_pred             cHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCccccccc
Confidence            44445577788889999999999998885432222 23468889999999999999999997776543  44333  445


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcC----ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006615          143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTG----KNFEAVETFRQVIDEGAIPNSRTYTVMIEHLV  218 (638)
Q Consensus       143 ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~  218 (638)
                      |.+.|.+.|+++.+...|+...... +.+..+..+|...|+..+    ..+.|..++....+.- ..|...|-.+-..+-
T Consensus       348 lgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e  425 (1018)
T KOG2002|consen  348 LGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLE  425 (1018)
T ss_pred             hhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHH
Confidence            8899999999999999999998874 445666777777777764    4566677666666542 236777777766665


Q ss_pred             HcCCHHHHHHHHHh----cccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhC---------CCCCCHHH-HHHHH
Q 006615          219 NLGKLDSALEVFSA----LPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDD---------GKFPGRAM-RVALE  284 (638)
Q Consensus       219 ~~g~~~~A~~~~~~----m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---------g~~p~~~~-~~ll~  284 (638)
                      ...-+. ++..|..    +...+-.+-....|.+.......|++++|...|.+....         |-.+..++ |++-.
T Consensus       426 ~~d~~~-sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlar  504 (1018)
T KOG2002|consen  426 QTDPWA-SLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLAR  504 (1018)
T ss_pred             hcChHH-HHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHH
Confidence            443322 2444433    233343467788899999999999999999999887544         11233333 57777


Q ss_pred             HHHHcCChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHH---HHhhcCCHHHH
Q 006615          285 RMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALA---NTLDEWSPEVV  361 (638)
Q Consensus       285 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~  361 (638)
                      .+-..++.+.|.+.++.+.......                                  +++.--.   ...+...+...
T Consensus       505 l~E~l~~~~~A~e~Yk~Ilkehp~Y----------------------------------Id~ylRl~~ma~~k~~~~ea~  550 (1018)
T KOG2002|consen  505 LLEELHDTEVAEEMYKSILKEHPGY----------------------------------IDAYLRLGCMARDKNNLYEAS  550 (1018)
T ss_pred             HHHhhhhhhHHHHHHHHHHHHCchh----------------------------------HHHHHHhhHHHHhccCcHHHH
Confidence            7788889999999999886442211                                  1111000   00001111111


Q ss_pred             H----HhhcCCccc-chHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhc------------CChHH
Q 006615          362 S----LLADAKFVW-TTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARH------------GHVEL  424 (638)
Q Consensus       362 ~----~~~~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~------------g~~~~  424 (638)
                      .    .+......+ ...+++..+.....+..|.+-|..+..+....+|+.+.-+|-..|.+.            +..++
T Consensus       551 ~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~K  630 (1018)
T KOG2002|consen  551 LLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEK  630 (1018)
T ss_pred             HHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHH
Confidence            1    111111111 123355555566666677776666555555557887776666655432            34678


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHH
Q 006615          425 VDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLE  504 (638)
Q Consensus       425 a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~  504 (638)
                      |+++|.+....... |...-|.+.-.++..|++++|..+|.+.++....  .   ..+|-.+..+|..+|++..|+++|+
T Consensus       631 Alq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~--~---~dv~lNlah~~~e~~qy~~AIqmYe  704 (1018)
T KOG2002|consen  631 ALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREATSD--F---EDVWLNLAHCYVEQGQYRLAIQMYE  704 (1018)
T ss_pred             HHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHHhh--C---CceeeeHHHHHHHHHHHHHHHHHHH
Confidence            99999998877654 7788888888999999999999999998875331  1   2478899999999999999999999


Q ss_pred             HHHhC-CCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 006615          505 EMIFS-GIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSL  583 (638)
Q Consensus       505 ~m~~~-g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~m~~~g~~p~~~~~~~li~~~  583 (638)
                      .-.+. .-.-+....+.|.+++-..|.+.+|.+.+.........-..+.||..+...--+..-...++  .|..-+.   
T Consensus       705 ~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k--~t~eev~---  779 (1018)
T KOG2002|consen  705 NCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEK--RTLEEVL---  779 (1018)
T ss_pred             HHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhccc--ccHHHHH---
Confidence            86654 33446778889999999999999999998888776544445666665544433322111111  2222222   


Q ss_pred             hccCcHHHHHHHHHHHHHccCC
Q 006615          584 WKEGRRKEAAAVEERCEKINDV  605 (638)
Q Consensus       584 ~~~g~~~~A~~~~~~~~~~~~~  605 (638)
                      ...+..++|.++|.++...+..
T Consensus       780 ~a~~~le~a~r~F~~ls~~~d~  801 (1018)
T KOG2002|consen  780 EAVKELEEARRLFTELSKNGDK  801 (1018)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCC
Confidence            2337889999999999987753

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.52  E-value=1.1e-09  Score=112.53  Aligned_cols=446  Identities=15%  Similarity=0.059  Sum_probs=265.8

Q ss_pred             HHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCH
Q 006615           74 HALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDL  153 (638)
Q Consensus        74 ~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~  153 (638)
                      +.+-..|++++|.+++.++.+..+.  ....|..|...+-..|+.+.+...+-..-. -.+.|...|..+.....+.|.+
T Consensus       147 N~lfarg~~eeA~~i~~EvIkqdp~--~~~ay~tL~~IyEqrGd~eK~l~~~llAAH-L~p~d~e~W~~ladls~~~~~i  223 (895)
T KOG2076|consen  147 NNLFARGDLEEAEEILMEVIKQDPR--NPIAYYTLGEIYEQRGDIEKALNFWLLAAH-LNPKDYELWKRLADLSEQLGNI  223 (895)
T ss_pred             HHHHHhCCHHHHHHHHHHHHHhCcc--chhhHHHHHHHHHHcccHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHhcccH
Confidence            3344459999999999999977533  445899999999999999988776543333 3355667899999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH----HHHHHHHHHcCCHHHHHHH
Q 006615          154 ELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTY----TVMIEHLVNLGKLDSALEV  229 (638)
Q Consensus       154 ~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty----~~li~~~~~~g~~~~A~~~  229 (638)
                      +.|.-.|.+..+.+ +++...+---...|-+.|+...|.+-|.++.....+.|..-+    -.++..+...++-+.|.+.
T Consensus       224 ~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~  302 (895)
T KOG2076|consen  224 NQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA  302 (895)
T ss_pred             HHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            99999999999886 555555555677788999999999999999985332232222    2345567777888999998


Q ss_pred             HHhcccC-CCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHH-------HHHHHHHHcCC-hHHHHHHHH
Q 006615          230 FSALPLM-RIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMR-------VALERMQEMGF-IQGANEFLR  300 (638)
Q Consensus       230 ~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~-------~ll~~~~~~g~-~~~a~~~~~  300 (638)
                      ++..... +-.-+...++.++..|.+...++.|.....++......+|..-.       .-...++..|+ ..--+.+++
T Consensus       303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~r  382 (895)
T KOG2076|consen  303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIR  382 (895)
T ss_pred             HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHh
Confidence            8877652 22345677899999999999999999999888775444443211       00111111111 000001111


Q ss_pred             HhCcCccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHH
Q 006615          301 EMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVL  380 (638)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (638)
                      .|                                                                         +|...
T Consensus       383 l~-------------------------------------------------------------------------icL~~  389 (895)
T KOG2076|consen  383 LM-------------------------------------------------------------------------ICLVH  389 (895)
T ss_pred             Hh-------------------------------------------------------------------------hhhhc
Confidence            11                                                                         11111


Q ss_pred             hccCChhHHHHHHHHHhcCCC--CcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHH
Q 006615          381 RHFKSPETAWHFFCWVAYQPG--YTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKAD  458 (638)
Q Consensus       381 ~~~~~~~~a~~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~  458 (638)
                      -+.+...+++..|-.   ...  ..-+...|..+..+|...|++.+|.++|..+......-+...|-.+..+|-..|.++
T Consensus       390 L~~~e~~e~ll~~l~---~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e  466 (895)
T KOG2076|consen  390 LKERELLEALLHFLV---EDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYE  466 (895)
T ss_pred             ccccchHHHHHHHHH---HhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHH
Confidence            111112222222111   111  222344566666666666666666666666665544445556666666666666666


Q ss_pred             HHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHh--------CCCCcchhhHHHHHHHHHccCC
Q 006615          459 AALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIF--------SGIVPDVQTFSGLMYHFALQGD  530 (638)
Q Consensus       459 ~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~--------~g~~p~~~t~~~li~~~~~~g~  530 (638)
                      .|...|......     .|+....--.|-..+.+.|+.++|.+.+..|..        .+..|+..........+...|+
T Consensus       467 ~A~e~y~kvl~~-----~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk  541 (895)
T KOG2076|consen  467 EAIEFYEKVLIL-----APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGK  541 (895)
T ss_pred             HHHHHHHHHHhc-----CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhh
Confidence            666666666543     333223334445556666666666666666431        2233444444444555566666


Q ss_pred             HHHHHHHHHHHHhCC-----C-----------------CCCHhhHHHHHHHHHHH-----hh-------------hCCCC
Q 006615          531 EKIVQKLFSMVRQNG-----V-----------------EPDAYMFKVLIQAYCKY-----LS-------------NSNLM  570 (638)
Q Consensus       531 ~~~a~~l~~~m~~~~-----~-----------------~p~~~~~~~li~~~~~~-----m~-------------~~g~~  570 (638)
                      .++-..+-.+|....     +                 .-...+-..++.+-.+.     +.             ..|+.
T Consensus       542 ~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Ls  621 (895)
T KOG2076|consen  542 REEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLS  621 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCc
Confidence            655444443333211     0                 00111111111111111     11             22333


Q ss_pred             CCH--HHHHHHHHHHhccCcHHHHHHHHHHHHHccC
Q 006615          571 PDA--ATKELLKKSLWKEGRRKEAAAVEERCEKIND  604 (638)
Q Consensus       571 p~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~  604 (638)
                      -+.  ..+.-++.++++.|++++|..+...+.+...
T Consensus       622 iddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~  657 (895)
T KOG2076|consen  622 IDDWFELFRELILSLAKLQRVQEALSVVFTALEAYI  657 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhh
Confidence            321  2457788899999999999999999888665

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.45  E-value=3.9e-10  Score=114.02  Aligned_cols=283  Identities=11%  Similarity=0.036  Sum_probs=206.4

Q ss_pred             cCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHHcCCHHHHH
Q 006615          150 SGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYT--VMIEHLVNLGKLDSAL  227 (638)
Q Consensus       150 ~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~--~li~~~~~~g~~~~A~  227 (638)
                      .|+++.|.+.+....+..-.| ...|-....+..+.|+++.|.+.|.++.+.  .|+...+.  .....+...|+++.|.
T Consensus        97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al  173 (398)
T PRK10747         97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR  173 (398)
T ss_pred             CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence            589999998887765543112 223333344457889999999999999873  56654433  3356788899999999


Q ss_pred             HHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHH--------HHHHHHHHcCChHHHHHHH
Q 006615          228 EVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMR--------VALERMQEMGFIQGANEFL  299 (638)
Q Consensus       228 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~--------~ll~~~~~~g~~~~a~~~~  299 (638)
                      +.++++.+.. +-+......+...|.+.|++++|.+++..+.+.+..++....        .++.......+.+...+++
T Consensus       174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w  252 (398)
T PRK10747        174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW  252 (398)
T ss_pred             HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            9999987754 235677888889999999999999999999888766433221        1122222222333333344


Q ss_pred             HHhCcCccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHH
Q 006615          300 REMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKV  379 (638)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (638)
                      +.+..                                                                           
T Consensus       253 ~~lp~---------------------------------------------------------------------------  257 (398)
T PRK10747        253 KNQSR---------------------------------------------------------------------------  257 (398)
T ss_pred             HhCCH---------------------------------------------------------------------------
Confidence            33311                                                                           


Q ss_pred             HhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHH
Q 006615          380 LRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADA  459 (638)
Q Consensus       380 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~  459 (638)
                                           ..+.++.....+...+...|+.++|.+++.+..+.  .|+...  .++.+....++.++
T Consensus       258 ---------------------~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~  312 (398)
T PRK10747        258 ---------------------KTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQ  312 (398)
T ss_pred             ---------------------HHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHH
Confidence                                 11346777888999999999999999999998874  445422  23444556699999


Q ss_pred             HHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHH
Q 006615          460 ALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS  539 (638)
Q Consensus       460 A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~  539 (638)
                      +.+..+...+.     .|+++..+..+...+.+.|++++|.+.|+...+.  .|+..+|..+...+.+.|+.++|.++++
T Consensus       313 al~~~e~~lk~-----~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~  385 (398)
T PRK10747        313 LEKVLRQQIKQ-----HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRR  385 (398)
T ss_pred             HHHHHHHHHhh-----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            99999988765     4555567889999999999999999999999985  6999999999999999999999999998


Q ss_pred             HHHh
Q 006615          540 MVRQ  543 (638)
Q Consensus       540 ~m~~  543 (638)
                      +-..
T Consensus       386 ~~l~  389 (398)
T PRK10747        386 DGLM  389 (398)
T ss_pred             HHHh
Confidence            7654

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.44  E-value=6.9e-10  Score=112.24  Aligned_cols=283  Identities=8%  Similarity=0.032  Sum_probs=195.3

Q ss_pred             cCCChhHHHHHHHHHHcCCCCCCChhHHHHH-HHHHHhcCChHHHHHHHHHHHhCCCCCchHhHH--HHHHHHHhcCCHH
Q 006615           78 SAPNADSALSIMEALKSNPNFSHNQSTLHAL-ATVLAKSQRNHELKTLIGDISSSKFLNVSVNFM--NLMQWYSTSGDLE  154 (638)
Q Consensus        78 ~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~--~ll~~~~~~g~~~  154 (638)
                      ..|+++.|.+.........   +.+..+..+ ..+....|+++.+...+.++.+.  .|+.....  .....+...|+++
T Consensus        96 ~eGd~~~A~k~l~~~~~~~---~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~  170 (398)
T PRK10747         96 AEGDYQQVEKLMTRNADHA---EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENH  170 (398)
T ss_pred             hCCCHHHHHHHHHHHHhcc---cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHH
Confidence            3589999988877765442   122233333 44447889999999999888764  34443222  3467888889999


Q ss_pred             HHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHHcCCHHHHH
Q 006615          155 LVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNS-------RTYTVMIEHLVNLGKLDSAL  227 (638)
Q Consensus       155 ~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~ty~~li~~~~~~g~~~~A~  227 (638)
                      .|...++++.+.+ +-+...+..+...|.+.|++++|.+++..+.+.+..++.       .+|..++....+..+.+...
T Consensus       171 ~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~  249 (398)
T PRK10747        171 AARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLK  249 (398)
T ss_pred             HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence            9999999998876 446778888889999999999999999999987655322       23344444445556667777


Q ss_pred             HHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHhCcCcc
Q 006615          228 EVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKR  307 (638)
Q Consensus       228 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~  307 (638)
                      ++++.+.+. .+.+......+...+...|+.++|.+++++..+..  |+. ....+.+....++.+++.+..+...+.  
T Consensus       250 ~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~--~~~-~l~~l~~~l~~~~~~~al~~~e~~lk~--  323 (398)
T PRK10747        250 RWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQ--YDE-RLVLLIPRLKTNNPEQLEKVLRQQIKQ--  323 (398)
T ss_pred             HHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCH-HHHHHHhhccCCChHHHHHHHHHHHhh--
Confidence            777777643 23467788888899999999999999998887643  333 222333444556777776666655321  


Q ss_pred             ccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChh
Q 006615          308 IKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPE  387 (638)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (638)
                                                                                                      
T Consensus       324 --------------------------------------------------------------------------------  323 (398)
T PRK10747        324 --------------------------------------------------------------------------------  323 (398)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhc
Q 006615          388 TAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDD  467 (638)
Q Consensus       388 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~  467 (638)
                                  .  +-|...+..+-..|.+.+++++|.+.|+...+.  .|+..++..+..++.+.|+.++|.+++++.
T Consensus       324 ------------~--P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~  387 (398)
T PRK10747        324 ------------H--GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDG  387 (398)
T ss_pred             ------------C--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence                        1  224555667777888888888888888887764  467777777777777888888887777764


Q ss_pred             h
Q 006615          468 R  468 (638)
Q Consensus       468 ~  468 (638)
                      .
T Consensus       388 l  388 (398)
T PRK10747        388 L  388 (398)
T ss_pred             H
Confidence            3

>PF13041 PPR_2: PPR repeat family

Probab=99.43  E-value=2.8e-13  Score=91.41  Aligned_cols=50  Identities=34%  Similarity=0.569  Sum_probs=37.3

Q ss_pred             CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 006615          170 LSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVN  219 (638)
Q Consensus       170 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~  219 (638)
                      ||+.+||++|++|++.|++++|.++|++|.+.|+.||..||++||++|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            66777777777777777777777777777777777777777777777764

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.43  E-value=1.7e-08  Score=100.04  Aligned_cols=426  Identities=12%  Similarity=0.085  Sum_probs=251.0

Q ss_pred             HHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHH----HHhcCCCCCHHhHHHHHHHHHhcC
Q 006615          111 VLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNE----YRQRAKLLSTESYNIVMSVYAKTG  186 (638)
Q Consensus       111 ~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~----m~~~~~~p~~~~~~~li~~~~~~g  186 (638)
                      +|++..-++.|..+++..++. ++.+...|.+-...=-..|+.+...++.++    +...|+..+...|-.=...|-+.|
T Consensus       415 AlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ag  493 (913)
T KOG0495|consen  415 ALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAG  493 (913)
T ss_pred             HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcC
Confidence            344444455555555554442 344444444444444444555554444433    233344445555544444455555


Q ss_pred             ChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHH
Q 006615          187 KNFEAVETFRQVIDEGAIPN--SRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSL  264 (638)
Q Consensus       187 ~~~~A~~~~~~m~~~g~~p~--~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l  264 (638)
                      ..-.+..+......-|+.-.  ..||+.--..|.+.+.++-|..+|....+. +..+...|......--..|..++...+
T Consensus       494 sv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Al  572 (913)
T KOG0495|consen  494 SVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEAL  572 (913)
T ss_pred             ChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHH
Confidence            55555555555544444321  234444445555555555555555554432 122344455444444445555555555


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCCCccccccccccCCC
Q 006615          265 LNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWL  344 (638)
Q Consensus       265 ~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (638)
                      |++....-.+....+.-....+-..|++..|..++.+...-                                       
T Consensus       573 lqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~---------------------------------------  613 (913)
T KOG0495|consen  573 LQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEA---------------------------------------  613 (913)
T ss_pred             HHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHh---------------------------------------
Confidence            55554433222222222223344445555555555443211                                       


Q ss_pred             ChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHH
Q 006615          345 DPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVEL  424 (638)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~  424 (638)
                                         ...+.-+|  +...++......++.|..+|....   +..|+...|..-+..---.+..++
T Consensus       614 -------------------~pnseeiw--laavKle~en~e~eraR~llakar---~~sgTeRv~mKs~~~er~ld~~ee  669 (913)
T KOG0495|consen  614 -------------------NPNSEEIW--LAAVKLEFENDELERARDLLAKAR---SISGTERVWMKSANLERYLDNVEE  669 (913)
T ss_pred             -------------------CCCcHHHH--HHHHHHhhccccHHHHHHHHHHHh---ccCCcchhhHHHhHHHHHhhhHHH
Confidence                               00000111  223344556788999999998764   456778888777777777889999


Q ss_pred             HHHHHHHHHHcCCCCC-HHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHH
Q 006615          425 VDRLIAKLRSDGMRLP-FSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVL  503 (638)
Q Consensus       425 a~~l~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~  503 (638)
                      |.+++++..+.  .|+ ...|..+.+.+-+.++++.|...|..-.+.     .|+....|-.|...=-+.|.+-.|..+|
T Consensus       670 A~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-----cP~~ipLWllLakleEk~~~~~rAR~il  742 (913)
T KOG0495|consen  670 ALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-----CPNSIPLWLLLAKLEEKDGQLVRARSIL  742 (913)
T ss_pred             HHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-----CCCCchHHHHHHHHHHHhcchhhHHHHH
Confidence            99999887764  334 466777888899999999999999876555     3444467888888888899999999999


Q ss_pred             HHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHH---------hhhCCCCCCHH
Q 006615          504 EEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY---------LSNSNLMPDAA  574 (638)
Q Consensus       504 ~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~---------m~~~g~~p~~~  574 (638)
                      ++..-.+ +-|...|-..|+.=.+.|+.+.|..++.+..+. +..+...|..-|....+.         +++...  |..
T Consensus       743 drarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkce~--dph  818 (913)
T KOG0495|consen  743 DRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEH--DPH  818 (913)
T ss_pred             HHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhccC--Cch
Confidence            9988764 237888999999999999999999999887765 333444444444443332         444433  334


Q ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHHccCCCCcccccceeee
Q 006615          575 TKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLALRGHIWAV  617 (638)
Q Consensus       575 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~w~~  617 (638)
                      ..-.+...+....+++.|.+.|.+....+     +.++..|..
T Consensus       819 Vllaia~lfw~e~k~~kar~Wf~Ravk~d-----~d~GD~wa~  856 (913)
T KOG0495|consen  819 VLLAIAKLFWSEKKIEKAREWFERAVKKD-----PDNGDAWAW  856 (913)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHccC-----CccchHHHH
Confidence            44556666777777777777777776654     234555544

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.41  E-value=3.4e-11  Score=122.65  Aligned_cols=90  Identities=17%  Similarity=0.074  Sum_probs=70.0

Q ss_pred             CCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhh
Q 006615          438 RLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQT  517 (638)
Q Consensus       438 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t  517 (638)
                      .|++.+|..++.+-..+|+.+.|..++.+|++.+-++..    .-|..|+-+   .+...-+..+++.|.+.|+.|+..|
T Consensus       201 ~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~----HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT  273 (1088)
T KOG4318|consen  201 APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRA----HYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSET  273 (1088)
T ss_pred             CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccc----ccchhhhhc---CccchHHHHHHHHHHHhcCCCCcch
Confidence            578888888888888888888888888888887665543    334555544   7888888999999999999999999


Q ss_pred             HHHHHHHHHccCCHHHH
Q 006615          518 FSGLMYHFALQGDEKIV  534 (638)
Q Consensus       518 ~~~li~~~~~~g~~~~a  534 (638)
                      +..-+..+...|....+
T Consensus       274 ~adyvip~l~N~~t~~~  290 (1088)
T KOG4318|consen  274 QADYVIPQLSNGQTKYG  290 (1088)
T ss_pred             hHHHHHhhhcchhhhhc
Confidence            99888888876664433

>TIGR00540 hemY_coli hemY protein

Probab=99.40  E-value=9.9e-10  Score=111.76  Aligned_cols=294  Identities=10%  Similarity=0.004  Sum_probs=197.8

Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCCC-HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHcCCHH
Q 006615          148 STSGDLELVLSTWNEYRQRAKLLS-TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSR--TYTVMIEHLVNLGKLD  224 (638)
Q Consensus       148 ~~~g~~~~A~~l~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--ty~~li~~~~~~g~~~  224 (638)
                      ...|+++.|.+.+.+..+..  |+ ...|-....++.+.|+.+.|.+.|.+..+.  .|+..  ..-+....+...|+++
T Consensus        95 ~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~  170 (409)
T TIGR00540        95 LAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELH  170 (409)
T ss_pred             HhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHH
Confidence            35688888888887776653  43 333334456677778888888888887764  24432  3333467777888888


Q ss_pred             HHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHH-H---HHHHHcCChHHHHHHHH
Q 006615          225 SALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVA-L---ERMQEMGFIQGANEFLR  300 (638)
Q Consensus       225 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~l-l---~~~~~~g~~~~a~~~~~  300 (638)
                      .|.+.++.+.+.. +-+..++..+...+...|++++|.+++..+.+.++.+......+ .   .+....+..+++.+.+.
T Consensus       171 ~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~  249 (409)
T TIGR00540       171 AARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLL  249 (409)
T ss_pred             HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence            8888888888754 23566778888888888999988888888888775543332111 1   11111111111111222


Q ss_pred             HhCcCccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHH
Q 006615          301 EMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVL  380 (638)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (638)
                      .+.                                                                             
T Consensus       250 ~~~-----------------------------------------------------------------------------  252 (409)
T TIGR00540       250 NWW-----------------------------------------------------------------------------  252 (409)
T ss_pred             HHH-----------------------------------------------------------------------------
Confidence            111                                                                             


Q ss_pred             hccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHcccCCHHH
Q 006615          381 RHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTI-RLIIDFYGISKKADA  459 (638)
Q Consensus       381 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~-~~li~~~~~~g~~~~  459 (638)
                                   ...  ....+.+...+..+...+...|+.++|.+++++..+.........+ ....-.....++.+.
T Consensus       253 -------------~~~--p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~  317 (409)
T TIGR00540       253 -------------KNQ--PRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEK  317 (409)
T ss_pred             -------------HHC--CHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHH
Confidence                         000  0011236777888889999999999999999999886543322111 111222344577888


Q ss_pred             HHHHHHhchhccCCCcchhHH--HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHH
Q 006615          460 ALKAFHDDRTLCGPISKFKLM--LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKL  537 (638)
Q Consensus       460 A~~~~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l  537 (638)
                      +.+.++...+.     .|+.+  ....++...+.+.|++++|.+.|+........||...+..+...+.+.|+.++|.++
T Consensus       318 ~~~~~e~~lk~-----~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~  392 (409)
T TIGR00540       318 LEKLIEKQAKN-----VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAM  392 (409)
T ss_pred             HHHHHHHHHHh-----CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            88888887765     34443  567788899999999999999999644444579999999999999999999999999


Q ss_pred             HHHHHh
Q 006615          538 FSMVRQ  543 (638)
Q Consensus       538 ~~~m~~  543 (638)
                      |++...
T Consensus       393 ~~~~l~  398 (409)
T TIGR00540       393 RQDSLG  398 (409)
T ss_pred             HHHHHH
Confidence            997643

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF13041 PPR_2: PPR repeat family

Probab=99.40  E-value=5.2e-13  Score=90.10  Aligned_cols=50  Identities=34%  Similarity=0.741  Sum_probs=35.0

Q ss_pred             cchhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH
Q 006615          513 PDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK  562 (638)
Q Consensus       513 p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~  562 (638)
                      ||.++||++|++|++.|++++|.++|++|.+.|+.||..||+.||++|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            66677777777777777777777777777777777777777777766653

>TIGR00540 hemY_coli hemY protein

Probab=99.39  E-value=1.4e-09  Score=110.64  Aligned_cols=290  Identities=8%  Similarity=0.051  Sum_probs=172.5

Q ss_pred             cCCChhHHHHHHHHHHcCCCCCCChh-HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHH
Q 006615           78 SAPNADSALSIMEALKSNPNFSHNQS-TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV  156 (638)
Q Consensus        78 ~~~~~~~Al~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A  156 (638)
                      ..|+++.|.+.+....+.   .|++. .+-....+....|+.+.+...+.+..+....+...........+...|+++.|
T Consensus        96 ~~g~~~~A~~~l~~~~~~---~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A  172 (409)
T TIGR00540        96 AEGDYAKAEKLIAKNADH---AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA  172 (409)
T ss_pred             hCCCHHHHHHHHHHHhhc---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence            568888888888776643   23332 23334455667788888888888876543222222333457777788888888


Q ss_pred             HHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH-HHHHHH---HHcCC----HHHHHH
Q 006615          157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYT-VMIEHL---VNLGK----LDSALE  228 (638)
Q Consensus       157 ~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~-~li~~~---~~~g~----~~~A~~  228 (638)
                      ...++++.+.+ +-+...+..+...+.+.|++++|.+++..+.+.++. +...+. .-..++   ...+.    .+...+
T Consensus       173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~  250 (409)
T TIGR00540       173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLN  250 (409)
T ss_pred             HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            88888888775 445667778888888888888888888888887654 333231 111111   22222    233333


Q ss_pred             HHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHcCChHHHHHHHHHhCcCc
Q 006615          229 VFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERM--QEMGFIQGANEFLREMLPDK  306 (638)
Q Consensus       229 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~--~~~g~~~~a~~~~~~~~~~~  306 (638)
                      .++..... .+.+...+..+...+...|+.++|.+++++..+....+....+.++..+  ...++.+.+.+.++..    
T Consensus       251 ~~~~~p~~-~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~----  325 (409)
T TIGR00540       251 WWKNQPRH-RRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQ----  325 (409)
T ss_pred             HHHHCCHH-HhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHH----
Confidence            34333211 1136677777888888888888888888888765433322111122111  1123333333333222    


Q ss_pred             cccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCCh
Q 006615          307 RIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSP  386 (638)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (638)
                                                                                                      
T Consensus       326 --------------------------------------------------------------------------------  325 (409)
T TIGR00540       326 --------------------------------------------------------------------------------  325 (409)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHh
Q 006615          387 ETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD  466 (638)
Q Consensus       387 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  466 (638)
                                ....+-.|+.....++-..+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++|++
T Consensus       326 ----------lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~  395 (409)
T TIGR00540       326 ----------AKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQD  395 (409)
T ss_pred             ----------HHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence                      2222222222445567777777888888888887544444566776677777777777777777777776


Q ss_pred             c
Q 006615          467 D  467 (638)
Q Consensus       467 ~  467 (638)
                      .
T Consensus       396 ~  396 (409)
T TIGR00540       396 S  396 (409)
T ss_pred             H
Confidence            3

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.38  E-value=3.7e-12  Score=122.93  Aligned_cols=127  Identities=14%  Similarity=0.106  Sum_probs=54.0

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHH
Q 006615          411 KMLTILARHGHVELVDRLIAKLRSDG-MRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRT  489 (638)
Q Consensus       411 ~li~~~~~~g~~~~a~~l~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~  489 (638)
                      .++..+.+.++++++.++++.+.... ...+...|..+...+.+.|+.++|.+.+++..+.     .|+.....+.++..
T Consensus       115 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~-----~P~~~~~~~~l~~~  189 (280)
T PF13429_consen  115 SALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL-----DPDDPDARNALAWL  189 (280)
T ss_dssp             ---H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH------TT-HHHHHHHHHH
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCHHHHHHHHHH
Confidence            33444444444444444444433211 1223334444444444444444444444444433     23223344555555


Q ss_pred             HHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006615          490 LTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQ  543 (638)
Q Consensus       490 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~  543 (638)
                      +...|+.+++.++++...+.. +.|...+..+..+|...|+.++|...|++..+
T Consensus       190 li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~  242 (280)
T PF13429_consen  190 LIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALK  242 (280)
T ss_dssp             HCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred             HHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccc
Confidence            555555555555555544432 22334445555555555555555555555544

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.38  E-value=2.8e-12  Score=123.78  Aligned_cols=260  Identities=16%  Similarity=0.108  Sum_probs=98.2

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccC
Q 006615          178 VMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTY-TVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVE  256 (638)
Q Consensus       178 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g  256 (638)
                      +...+.+.|++++|++++++-....-+|+...| ..+...+...++.+.|.+.++++...+-. +...+..++.. ...+
T Consensus        14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~   91 (280)
T PF13429_consen   14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG   91 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence            345555666666666666544333212333333 33333444556666666666666654321 34445555555 5666


Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHcCChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCCCcccc
Q 006615          257 RFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIA  335 (638)
Q Consensus       257 ~~~~A~~l~~~m~~~g~~p~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (638)
                      ++++|.+++.+.-+..  ++... ...+..+...++++++.++++.+.                                
T Consensus        92 ~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~--------------------------------  137 (280)
T PF13429_consen   92 DPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLE--------------------------------  137 (280)
T ss_dssp             ----------------------------H-HHHTT-HHHHHHHHHHHH--------------------------------
T ss_pred             cccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHH--------------------------------
Confidence            6666666665543332  22222 244455556666666666655542                                


Q ss_pred             ccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHH
Q 006615          336 YGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTI  415 (638)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~  415 (638)
                                                                                    .......+...|..+...
T Consensus       138 --------------------------------------------------------------~~~~~~~~~~~~~~~a~~  155 (280)
T PF13429_consen  138 --------------------------------------------------------------ELPAAPDSARFWLALAEI  155 (280)
T ss_dssp             --------------------------------------------------------------H-T---T-HHHHHHHHHH
T ss_pred             --------------------------------------------------------------hccCCCCCHHHHHHHHHH
Confidence                                                                          111223467778888888


Q ss_pred             HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCC
Q 006615          416 LARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKR  495 (638)
Q Consensus       416 ~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  495 (638)
                      +.+.|+.++|.+.+++..+..+. |......++..+...|+.+++..++.......     |+....|..+..+|...|+
T Consensus       156 ~~~~G~~~~A~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~la~~~~~lg~  229 (280)
T PF13429_consen  156 YEQLGDPDKALRDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-----PDDPDLWDALAAAYLQLGR  229 (280)
T ss_dssp             HHHCCHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH------HTSCCHCHHHHHHHHHHT-
T ss_pred             HHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-----cCHHHHHHHHHHHhccccc
Confidence            88999999999999998877643 57778888889999999988888887766542     2222467888889999999


Q ss_pred             hHHHHHHHHHHHhCCCCc-chhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006615          496 DFDAINVLEEMIFSGIVP-DVQTFSGLMYHFALQGDEKIVQKLFSMVRQ  543 (638)
Q Consensus       496 ~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~l~~~m~~  543 (638)
                      .++|+..|++..+.  .| |......+..++...|+.++|.++.++..+
T Consensus       230 ~~~Al~~~~~~~~~--~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~  276 (280)
T PF13429_consen  230 YEEALEYLEKALKL--NPDDPLWLLAYADALEQAGRKDEALRLRRQALR  276 (280)
T ss_dssp             HHHHHHHHHHHHHH--STT-HHHHHHHHHHHT-----------------
T ss_pred             cccccccccccccc--ccccccccccccccccccccccccccccccccc
Confidence            99999999998874  34 677777888899999999999998876653

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.37  E-value=2.2e-09  Score=109.79  Aligned_cols=139  Identities=12%  Similarity=0.071  Sum_probs=78.2

Q ss_pred             HHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCC--CCCCHhhHHHHHHHHH
Q 006615          484 SSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNG--VEPDAYMFKVLIQAYC  561 (638)
Q Consensus       484 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~--~~p~~~~~~~li~~~~  561 (638)
                      +.++..|+..-+..+++..-+.....-+ |  ..|..||+-+......+.|..+.++.....  +.-|..-+..+.+.+.
T Consensus       463 ~ql~l~l~se~n~lK~l~~~ekye~~lf-~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~  539 (1088)
T KOG4318|consen  463 NQLHLTLNSEYNKLKILCDEEKYEDLLF-A--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQ  539 (1088)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh-h--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHH
Confidence            4445555555455555443333322111 1  446666666666666666666666655332  2334444444444444


Q ss_pred             HH------------hhh-CCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHccCCCCcccccceeee--eccccchh
Q 006615          562 KY------------LSN-SNLMPD-AATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLALRGHIWAV--SSADLTRV  625 (638)
Q Consensus       562 ~~------------m~~-~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~w~~--~~~~~~~~  625 (638)
                      +.            +++ ....|+ ..+.-.+++.....|+.+...++++-+...|...    .+..|.+  .+.+++.+
T Consensus       540 r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e----tgPl~~vhLrkdd~s~a  615 (1088)
T KOG4318|consen  540 RLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE----TGPLWMVHLRKDDQSAA  615 (1088)
T ss_pred             HhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh----cccceEEEeeccchhhh
Confidence            33            221 222343 3455667788888999999999999999988754    2556665  55666666


Q ss_pred             cccc
Q 006615          626 HSIY  629 (638)
Q Consensus       626 ~~~~  629 (638)
                      .+..
T Consensus       616 ~ea~  619 (1088)
T KOG4318|consen  616 QEAP  619 (1088)
T ss_pred             hhcc
Confidence            5544

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.37  E-value=3.7e-09  Score=99.18  Aligned_cols=291  Identities=13%  Similarity=0.088  Sum_probs=217.5

Q ss_pred             cCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 006615          150 SGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEV  229 (638)
Q Consensus       150 ~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~  229 (638)
                      .|++..|+++..+-.+.+-.| ...|-.-..+--+.|+.+.+-.++.+..+.--.++...+-+........|+++.|..-
T Consensus        97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~  175 (400)
T COG3071          97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN  175 (400)
T ss_pred             cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence            489999999998887777444 5556666677778899999999999988853355666777777888889999999988


Q ss_pred             HHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHH--------HHHHHHHHcCChHHHHHHHHH
Q 006615          230 FSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMR--------VALERMQEMGFIQGANEFLRE  301 (638)
Q Consensus       230 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~--------~ll~~~~~~g~~~~a~~~~~~  301 (638)
                      ++++.+.+ ..+.........+|.+.|++.+...++.+|.+.|...+...-        .++.-....+..+.-...|++
T Consensus       176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~  254 (400)
T COG3071         176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN  254 (400)
T ss_pred             HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence            88887765 346778888999999999999999999999999888776431        223222233333333333333


Q ss_pred             hCcCccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHh
Q 006615          302 MLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLR  381 (638)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (638)
                      ..                                                                              
T Consensus       255 ~p------------------------------------------------------------------------------  256 (400)
T COG3071         255 QP------------------------------------------------------------------------------  256 (400)
T ss_pred             cc------------------------------------------------------------------------------
Confidence            31                                                                              


Q ss_pred             ccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHH
Q 006615          382 HFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAAL  461 (638)
Q Consensus       382 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~  461 (638)
                                        ...+.++..-.+++.-+.++|+.++|.++..+..+++..|+..    ..-.+.+.++.+.-.
T Consensus       257 ------------------r~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~  314 (400)
T COG3071         257 ------------------RKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLI  314 (400)
T ss_pred             ------------------HHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHH
Confidence                              1223355666778888999999999999999999888776621    223455667766666


Q ss_pred             HHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHH
Q 006615          462 KAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMV  541 (638)
Q Consensus       462 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m  541 (638)
                      +..+.-....+.  +   +..+.+|...|.+.+.+.+|.+.|+...+.  .|+..+|+.+-.++.+.|+..+|.++.++.
T Consensus       315 k~~e~~l~~h~~--~---p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~  387 (400)
T COG3071         315 KAAEKWLKQHPE--D---PLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREA  387 (400)
T ss_pred             HHHHHHHHhCCC--C---hhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHH
Confidence            666655444322  2   357999999999999999999999988775  799999999999999999999999999988


Q ss_pred             HhCCCCCC
Q 006615          542 RQNGVEPD  549 (638)
Q Consensus       542 ~~~~~~p~  549 (638)
                      ...-.+|+
T Consensus       388 L~~~~~~~  395 (400)
T COG3071         388 LLLTRQPN  395 (400)
T ss_pred             HHHhcCCC
Confidence            75544444

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.36  E-value=6e-08  Score=92.63  Aligned_cols=436  Identities=14%  Similarity=0.067  Sum_probs=264.4

Q ss_pred             HHHHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhc------------------CChHHHHH----HHHH
Q 006615           70 FIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKS------------------QRNHELKT----LIGD  127 (638)
Q Consensus        70 ~~~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~------------------~~~~~a~~----l~~~  127 (638)
                      ..+..++.....++.|.-+++.....         ...+++.+++-                  .....-..    +...
T Consensus        82 y~laks~fd~kEf~Raa~fL~~~~s~---------k~~FL~lysk~La~~kk~~e~~~~~l~~~~~~~~~~~~l~~L~~~  152 (559)
T KOG1155|consen   82 YLLAKSYFDCKEFERAAFFLQNCKSK---------KSAFLRLYSKYLAGEKKSEEEMAELLGRLESFSRINSELIELNKP  152 (559)
T ss_pred             hhhHhhhhhhHHHHHHHHHHHhcchH---------HHHHHHHHHHHHhhhHHHHHHHHHhhccchhhhhhhhHHHHHhhH
Confidence            34567777888888888888776532         22233333221                  11111111    1111


Q ss_pred             HH--hCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 006615          128 IS--SSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIP  205 (638)
Q Consensus       128 ~~--~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p  205 (638)
                      +.  ..+...|...+-.....+-+.|....|...|-.....- +-.-.+|-.|...   ..+.+.+..+..     |...
T Consensus       153 le~~~~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~l---it~~e~~~~l~~-----~l~~  223 (559)
T KOG1155|consen  153 LESKHCGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSEL---ITDIEILSILVV-----GLPS  223 (559)
T ss_pred             HHHHHhcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHh---hchHHHHHHHHh-----cCcc
Confidence            22  12333444333333344456667777777776666542 2222333333222   222222222211     1221


Q ss_pred             CHHHHH--HHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC--CHHHH-
Q 006615          206 NSRTYT--VMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP--GRAMR-  280 (638)
Q Consensus       206 ~~~ty~--~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~~~-  280 (638)
                      |..-..  -+..++-.....+++.+-.+.....|+.-+...-+-...+.-...++++|+.+|+++.+.+.-.  |..+| 
T Consensus       224 ~~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlyS  303 (559)
T KOG1155|consen  224 DMHWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYS  303 (559)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHh
Confidence            211111  2334566666778887777777777764444333433445556788899999999888774322  22344 


Q ss_pred             HHHHHHHHcCChHH---HHHHHHHhCcCccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCC
Q 006615          281 VALERMQEMGFIQG---ANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWS  357 (638)
Q Consensus       281 ~ll~~~~~~g~~~~---a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (638)
                      +++-.  +..+..-   |..++. +                                                       
T Consensus       304 N~LYv--~~~~skLs~LA~~v~~-i-------------------------------------------------------  325 (559)
T KOG1155|consen  304 NVLYV--KNDKSKLSYLAQNVSN-I-------------------------------------------------------  325 (559)
T ss_pred             HHHHH--HhhhHHHHHHHHHHHH-h-------------------------------------------------------
Confidence            33322  2211111   111110 0                                                       


Q ss_pred             HHHHHHhhcCCccc-chHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 006615          358 PEVVSLLADAKFVW-TTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDG  436 (638)
Q Consensus       358 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g  436 (638)
                               +.+.| +-.+++..+.-.++.++|...|+....-.  +-....|+.|-+-|....+...|.+-++..++-+
T Consensus       326 ---------dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN--p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~  394 (559)
T KOG1155|consen  326 ---------DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN--PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN  394 (559)
T ss_pred             ---------ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC--cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC
Confidence                     01111 22346777777899999999999886443  2245578888899999999999999999999876


Q ss_pred             CCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchh
Q 006615          437 MRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQ  516 (638)
Q Consensus       437 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~  516 (638)
                      .. |-..|-.|.++|.-.+...-|+-+|++..+.     +|++...|.+|..+|.+.++.++|++.|.+....|-. +..
T Consensus       395 p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~-----kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~  467 (559)
T KOG1155|consen  395 PR-DYRAWYGLGQAYEIMKMHFYALYYFQKALEL-----KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGS  467 (559)
T ss_pred             ch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhc-----CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chH
Confidence            54 7788999999999999999999999998865     7777789999999999999999999999999987633 668


Q ss_pred             hHHHHHHHHHccCCHHHHHHHHHHHHh----CCCCCCHhhHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHH
Q 006615          517 TFSGLMYHFALQGDEKIVQKLFSMVRQ----NGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEA  592 (638)
Q Consensus       517 t~~~li~~~~~~g~~~~a~~l~~~m~~----~~~~p~~~~~~~li~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A  592 (638)
                      .+..|.+.|-+.++..+|...|+.-.+    .|..-+......+.  ++....+.+---.+..|.+.....  ....+||
T Consensus       468 ~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~f--LA~~f~k~~~~~~As~Ya~~~~~~--~~e~eea  543 (559)
T KOG1155|consen  468 ALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLF--LAEYFKKMKDFDEASYYATLVLKG--ETECEEA  543 (559)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHH--HHHHHHhhcchHHHHHHHHHHhcC--CchHHHH
Confidence            899999999999999999999976554    34332322222211  222222222222344454444443  5567888


Q ss_pred             HHHHHHHHHcc
Q 006615          593 AAVEERCEKIN  603 (638)
Q Consensus       593 ~~~~~~~~~~~  603 (638)
                      ..++.++....
T Consensus       544 k~LlReir~~~  554 (559)
T KOG1155|consen  544 KALLREIRKIQ  554 (559)
T ss_pred             HHHHHHHHHhc
Confidence            88888877654

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.35  E-value=2e-07  Score=92.71  Aligned_cols=474  Identities=11%  Similarity=0.080  Sum_probs=304.4

Q ss_pred             HHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHH----HHhCCCCCchHhHHHHHHHH
Q 006615           72 VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGD----ISSSKFLNVSVNFMNLMQWY  147 (638)
Q Consensus        72 ~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~----~~~~~~~~~~~~~~~ll~~~  147 (638)
                      +.-+|.+...|+.|..+++..++.  ++.++..|-+-...--..|+.+...+++++    +...|+..+...|-.=...|
T Consensus       412 LwlAlarLetYenAkkvLNkaRe~--iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~  489 (913)
T KOG0495|consen  412 LWLALARLETYENAKKVLNKAREI--IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEAC  489 (913)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh--CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHH
Confidence            556788888899999999999875  456667777777777788999988888765    34577777777777667777


Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCC--CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHH
Q 006615          148 STSGDLELVLSTWNEYRQRAKLL--STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIP-NSRTYTVMIEHLVNLGKLD  224 (638)
Q Consensus       148 ~~~g~~~~A~~l~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~  224 (638)
                      -..|..-.+..+......-|+.-  --.||+.--..|.+.+.++-|..+|....+.  .| +...|.-....--..|..+
T Consensus       490 e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv--fp~k~slWlra~~~ek~hgt~E  567 (913)
T KOG0495|consen  490 EDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV--FPCKKSLWLRAAMFEKSHGTRE  567 (913)
T ss_pred             hhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHhcCcHH
Confidence            77777777777776666555432  2346666667777777777777777766653  23 3444444444444456666


Q ss_pred             HHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHhCc
Q 006615          225 SALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLP  304 (638)
Q Consensus       225 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  304 (638)
                      +-..+|++....- +.....|-....-+-..|++..|..++....+........++..+..-.....++.|..+|.+...
T Consensus       568 sl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~  646 (913)
T KOG0495|consen  568 SLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS  646 (913)
T ss_pred             HHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc
Confidence            6666666655431 223333444445555566666666666666555444333444555555566666666666655533


Q ss_pred             CccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCC---HHHHHHhhc-CCcccchHHHHHHH
Q 006615          305 DKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWS---PEVVSLLAD-AKFVWTTRLVCKVL  380 (638)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~  380 (638)
                      ...+..+.+                               ..-.+...+....   ..+...+.. +.+.--.+++++.+
T Consensus       647 ~sgTeRv~m-------------------------------Ks~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~  695 (913)
T KOG0495|consen  647 ISGTERVWM-------------------------------KSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIE  695 (913)
T ss_pred             cCCcchhhH-------------------------------HHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHH
Confidence            221111110                               0001111110000   000000111 11222345678888


Q ss_pred             hccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHH
Q 006615          381 RHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA  460 (638)
Q Consensus       381 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A  460 (638)
                      ...++.+.|.+.|..-..  .++..+..|-.+...=-+.|++-.|..++++..-++.. +...|-..|.+=.+.|..+.|
T Consensus       696 e~~~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a  772 (913)
T KOG0495|consen  696 EQMENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQA  772 (913)
T ss_pred             HHHHHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHH
Confidence            888888888888875432  22334456777766677788888999999988877765 778888888888899999999


Q ss_pred             HHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHH
Q 006615          461 LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSM  540 (638)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~  540 (638)
                      ..+..+..+.++.     ....|..-|....+.++-..+...+   ++  +.-|.+..-.+...|-...++++|.+-|.+
T Consensus       773 ~~lmakALQecp~-----sg~LWaEaI~le~~~~rkTks~DAL---kk--ce~dphVllaia~lfw~e~k~~kar~Wf~R  842 (913)
T KOG0495|consen  773 ELLMAKALQECPS-----SGLLWAEAIWLEPRPQRKTKSIDAL---KK--CEHDPHVLLAIAKLFWSEKKIEKAREWFER  842 (913)
T ss_pred             HHHHHHHHHhCCc-----cchhHHHHHHhccCcccchHHHHHH---Hh--ccCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9888888776443     2367888888877777754444433   33  245777777788888888889999999988


Q ss_pred             HHhCCCCCCHhhHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHccCCCCcccccceeeeecc
Q 006615          541 VRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLALRGHIWAVSSA  620 (638)
Q Consensus       541 m~~~~~~p~~~~~~~li~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~w~~~~~  620 (638)
                      ..+.+  ||                      +-.+|.-+...+.+.|.-++-.++++......     +.++..|...++
T Consensus       843 avk~d--~d----------------------~GD~wa~fykfel~hG~eed~kev~~~c~~~E-----P~hG~~W~avSK  893 (913)
T KOG0495|consen  843 AVKKD--PD----------------------NGDAWAWFYKFELRHGTEEDQKEVLKKCETAE-----PTHGELWQAVSK  893 (913)
T ss_pred             HHccC--Cc----------------------cchHHHHHHHHHHHhCCHHHHHHHHHHHhccC-----CCCCcHHHHHhh
Confidence            88753  22                      24567778888899999999999999977654     457778988777


Q ss_pred             ccc
Q 006615          621 DLT  623 (638)
Q Consensus       621 ~~~  623 (638)
                      +..
T Consensus       894 ~i~  896 (913)
T KOG0495|consen  894 DIK  896 (913)
T ss_pred             hHH
Confidence            754

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.33  E-value=5.7e-08  Score=100.32  Aligned_cols=398  Identities=14%  Similarity=0.125  Sum_probs=272.7

Q ss_pred             HHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChH
Q 006615          110 TVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNF  189 (638)
Q Consensus       110 ~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~  189 (638)
                      ..+...|++++|.+++.++++.. +.+...|..|...|-+.|+.+++...+--.-..+ +-|...|-.+-....+.|+++
T Consensus       147 N~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~  224 (895)
T KOG2076|consen  147 NNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNIN  224 (895)
T ss_pred             HHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHH
Confidence            33445599999999999998764 4566679999999999999999998876665543 557789999999999999999


Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHH----HHHHHHHHccCCHHHHHHHH
Q 006615          190 EAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQY----LILVEGFVGVERFDEAKSLL  265 (638)
Q Consensus       190 ~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~----~~li~~~~~~g~~~~A~~l~  265 (638)
                      .|.-.|.+..+.. +++...+--=...|-+.|+...|.+-|.++.+..-..|..-.    -.++..+...++-+.|.+.+
T Consensus       225 qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l  303 (895)
T KOG2076|consen  225 QARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKAL  303 (895)
T ss_pred             HHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            9999999999863 235444445567788999999999999998764311122222    23456677788889999999


Q ss_pred             HHHHhC--CCCCCHHHHHHHHHHHHcCChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCCCccccccccccCC
Q 006615          266 NEMRDD--GKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPW  343 (638)
Q Consensus       266 ~~m~~~--g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (638)
                      +.....  +...-.....+...+.+...++.+...+..+......++..                ......         
T Consensus       304 e~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~----------------e~~~~~---------  358 (895)
T KOG2076|consen  304 EGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDS----------------EWDTDE---------  358 (895)
T ss_pred             HHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChh----------------hhhhhh---------
Confidence            888662  22222233456667778888888888877765411111000                000000         


Q ss_pred             CChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChH
Q 006615          344 LDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVE  423 (638)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~  423 (638)
                               .+...++                                .+.  ....+..++... .-++-++.+....+
T Consensus       359 ---------~~~~~~~--------------------------------~~~--~~~~~~s~~l~v-~rl~icL~~L~~~e  394 (895)
T KOG2076|consen  359 ---------RRREEPN--------------------------------ALC--EVGKELSYDLRV-IRLMICLVHLKERE  394 (895)
T ss_pred             ---------hcccccc--------------------------------ccc--cCCCCCCccchh-HhHhhhhhcccccc
Confidence                     0000000                                000  012233444444 23444566667777


Q ss_pred             HHHHHHHHHHHcCCCC--CHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHH
Q 006615          424 LVDRLIAKLRSDGMRL--PFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAIN  501 (638)
Q Consensus       424 ~a~~l~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~  501 (638)
                      ....+.....+..+.|  +...|.-+.++|...|++.+|..+|..+....+...    ...|-.+..+|...|..++|.+
T Consensus       395 ~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~----~~vw~~~a~c~~~l~e~e~A~e  470 (895)
T KOG2076|consen  395 LLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQN----AFVWYKLARCYMELGEYEEAIE  470 (895)
T ss_pred             hHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccc----hhhhHHHHHHHHHHhhHHHHHH
Confidence            7777777777777443  457788899999999999999999999876543322    4789999999999999999999


Q ss_pred             HHHHHHhCCCCcc-hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 006615          502 VLEEMIFSGIVPD-VQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLK  580 (638)
Q Consensus       502 l~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~m~~~g~~p~~~~~~~li  580 (638)
                      .|+.....  .|+ ...-.+|-.-+-+.|+.++|.+.++.+.    .||..+           ....+..|+...--...
T Consensus       471 ~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~----~~D~~~-----------~e~~a~~~e~ri~~~r~  533 (895)
T KOG2076|consen  471 FYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQII----NPDGRN-----------AEACAWEPERRILAHRC  533 (895)
T ss_pred             HHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhccc----CCCccc-----------hhhccccHHHHHHHHHH
Confidence            99999875  454 3344556667888999999999999876    344321           23445567766666677


Q ss_pred             HHHhccCcHHHHHHHHHHHH
Q 006615          581 KSLWKEGRRKEAAAVEERCE  600 (638)
Q Consensus       581 ~~~~~~g~~~~A~~~~~~~~  600 (638)
                      +.|...|+.++=..+-..|.
T Consensus       534 d~l~~~gk~E~fi~t~~~Lv  553 (895)
T KOG2076|consen  534 DILFQVGKREEFINTASTLV  553 (895)
T ss_pred             HHHHHhhhHHHHHHHHHHHH
Confidence            77777787777544444444

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.31  E-value=1.2e-09  Score=108.97  Aligned_cols=125  Identities=18%  Similarity=0.099  Sum_probs=64.6

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHc
Q 006615          413 LTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTK  492 (638)
Q Consensus       413 i~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~  492 (638)
                      -..|.+.++++.|+-.|++..+-+.. +.+....+...+.+.|+.|+|+++++++.......+     ..---.+..+..
T Consensus       496 G~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~-----l~~~~~~~il~~  569 (638)
T KOG1126|consen  496 GTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNP-----LCKYHRASILFS  569 (638)
T ss_pred             hhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCc-----hhHHHHHHHHHh
Confidence            33445555555555555555443332 334444444455555555555555555443321111     112222334455


Q ss_pred             cCChHHHHHHHHHHHhCCCCcc-hhhHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 006615          493 CKRDFDAINVLEEMIFSGIVPD-VQTFSGLMYHFALQGDEKIVQKLFSMVRQNG  545 (638)
Q Consensus       493 ~g~~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~  545 (638)
                      .++.++|++.++++++.  .|+ ...|-.+.+.|.+.|+.+.|+.-|-.+.+..
T Consensus       570 ~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld  621 (638)
T KOG1126|consen  570 LGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD  621 (638)
T ss_pred             hcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence            66667777777776663  454 3345555566777777777766666666543

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.30  E-value=7e-09  Score=98.22  Aligned_cols=426  Identities=12%  Similarity=0.064  Sum_probs=209.9

Q ss_pred             HHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHH-HHHHHHHHhcCChHHHHHHHHHHHhCCCCCc----hHhHHHHHHH
Q 006615           72 VTHALRSAPNADSALSIMEALKSNPNFSHNQSTL-HALATVLAKSQRNHELKTLIGDISSSKFLNV----SVNFMNLMQW  146 (638)
Q Consensus        72 ~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~-~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~----~~~~~~ll~~  146 (638)
                      +..-|.......+|+.-|+-+.+.. .-|+.-.. ..+-..+.+.+.+..|.+.++.....-...+    ....+.+--.
T Consensus       207 laqqy~~ndm~~ealntyeiivknk-mf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvt  285 (840)
T KOG2003|consen  207 LAQQYEANDMTAEALNTYEIIVKNK-MFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVT  285 (840)
T ss_pred             HHHHhhhhHHHHHHhhhhhhhhccc-ccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCee
Confidence            3445555667788888888777653 33443221 2234455677778888888776554321111    1234444456


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH------------HHHHH-
Q 006615          147 YSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSR------------TYTVM-  213 (638)
Q Consensus       147 ~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------------ty~~l-  213 (638)
                      +.+.|.+++|..-|+...+..  |+..+--.|+-++..-|+-++..+.|..|..-...||..            ..+-- 
T Consensus       286 fiq~gqy~dainsfdh~m~~~--pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai  363 (840)
T KOG2003|consen  286 FIQAGQYDDAINSFDHCMEEA--PNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAI  363 (840)
T ss_pred             EEecccchhhHhhHHHHHHhC--ccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHH
Confidence            778889999999998887764  666554444445555688888888888887643333322            22222 


Q ss_pred             ----HHHHHHcCC--HHHHHHHHHhcccCCCccCHhH-------------HHH--------HHHHHHccCCHHHHHHHHH
Q 006615          214 ----IEHLVNLGK--LDSALEVFSALPLMRIKRTSKQ-------------YLI--------LVEGFVGVERFDEAKSLLN  266 (638)
Q Consensus       214 ----i~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~~-------------~~~--------li~~~~~~g~~~~A~~l~~  266 (638)
                          ++-+-+.+.  .+++.-.-.++..--+.||-..             |.-        -...|.+.|+++.|+++++
T Consensus       364 ~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilk  443 (840)
T KOG2003|consen  364 KNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILK  443 (840)
T ss_pred             hhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHH
Confidence                222222221  2222222222222222333210             100        1224667888888888887


Q ss_pred             HHHhCCCCCCHHH--H-HHHHHHHHcCChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCCCccccccccccCC
Q 006615          267 EMRDDGKFPGRAM--R-VALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPW  343 (638)
Q Consensus       267 ~m~~~g~~p~~~~--~-~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (638)
                      -..+.+-......  . .++.-+.-..++..|.++-+.....++-......              +.+.         ..
T Consensus       444 v~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~--------------nkgn---------~~  500 (840)
T KOG2003|consen  444 VFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALT--------------NKGN---------IA  500 (840)
T ss_pred             HHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhh--------------cCCc---------ee
Confidence            7765544433222  1 2232222233455555554433221110000000              0000         00


Q ss_pred             CChhhHHHHhh------cCCHHHHHHhhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCC-cCCHHHHHHHHHHH
Q 006615          344 LDPKALANTLD------EWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGY-THDVYALEKMLTIL  416 (638)
Q Consensus       344 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~p~~~~~~~li~~~  416 (638)
                      +..+.+..+..      .....+...         ..-++......|.+++|++.|-.+-   ++ .-+......+...|
T Consensus       501 f~ngd~dka~~~ykeal~ndasc~ea---------lfniglt~e~~~~ldeald~f~klh---~il~nn~evl~qianiy  568 (840)
T KOG2003|consen  501 FANGDLDKAAEFYKEALNNDASCTEA---------LFNIGLTAEALGNLDEALDCFLKLH---AILLNNAEVLVQIANIY  568 (840)
T ss_pred             eecCcHHHHHHHHHHHHcCchHHHHH---------HHHhcccHHHhcCHHHHHHHHHHHH---HHHHhhHHHHHHHHHHH
Confidence            00000111110      001111111         1112333344566666666665431   11 12344455555566


Q ss_pred             HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCCh
Q 006615          417 ARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRD  496 (638)
Q Consensus       417 ~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~  496 (638)
                      ....+..+|.+++.+.... ++-|+.+.+.|.+.|-+.|+-..|++.+-+--+-     -|....+..-|..-|....-+
T Consensus       569 e~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-----fp~nie~iewl~ayyidtqf~  642 (840)
T KOG2003|consen  569 ELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-----FPCNIETIEWLAAYYIDTQFS  642 (840)
T ss_pred             HHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-----cCcchHHHHHHHHHHHhhHHH
Confidence            6666666666665544322 2235566666666676777666666655442221     111123444455555666666


Q ss_pred             HHHHHHHHHHHhCCCCcchhhHHHHHH-HHHccCCHHHHHHHHHHHHh
Q 006615          497 FDAINVLEEMIFSGIVPDVQTFSGLMY-HFALQGDEKIVQKLFSMVRQ  543 (638)
Q Consensus       497 ~~A~~l~~~m~~~g~~p~~~t~~~li~-~~~~~g~~~~a~~l~~~m~~  543 (638)
                      ++|+..|++..-  ++|+..-|-.+|. ++.+.|++.+|.++++...+
T Consensus       643 ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr  688 (840)
T KOG2003|consen  643 EKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR  688 (840)
T ss_pred             HHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            677777766543  4677777766664 34456777777777766655

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.30  E-value=3.1e-09  Score=100.56  Aligned_cols=396  Identities=11%  Similarity=0.096  Sum_probs=244.2

Q ss_pred             HHHHcCCChhHHHHHHHHHHc-CCCCCCCh--hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhc
Q 006615           74 HALRSAPNADSALSIMEALKS-NPNFSHNQ--STLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTS  150 (638)
Q Consensus        74 ~~l~~~~~~~~Al~~~~~~~~-~~~~~~~~--~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~  150 (638)
                      +.+.+.+++..|+++|+-... -|.+.-+.  ...+.+--.+.+.|.++.|..-|++..+.  .|+..+-..|+-++..-
T Consensus       245 ni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i  322 (840)
T KOG2003|consen  245 NIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAI  322 (840)
T ss_pred             ceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheec
Confidence            345566778899999987663 23222221  12333434456789999999999988774  47766655566666677


Q ss_pred             CCHHHHHHHHHHHHhcCC------------CCCHHhHHHHHH-----HHHhcC--ChHHHHHHHHHHHHcCCCCCHH---
Q 006615          151 GDLELVLSTWNEYRQRAK------------LLSTESYNIVMS-----VYAKTG--KNFEAVETFRQVIDEGAIPNSR---  208 (638)
Q Consensus       151 g~~~~A~~l~~~m~~~~~------------~p~~~~~~~li~-----~~~~~g--~~~~A~~~~~~m~~~g~~p~~~---  208 (638)
                      |+-++..+.|..|..-..            .|+....|.-|.     -.-+.+  +-++++-.-..+..--+.|+-.   
T Consensus       323 ~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~  402 (840)
T KOG2003|consen  323 GDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGC  402 (840)
T ss_pred             CcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhccc
Confidence            899999999998864321            223333332221     111111  1122222112222212222210   


Q ss_pred             --HHHH----------------HHHHHHHcCCHHHHHHHHHhcccCCCcc------------------------------
Q 006615          209 --TYTV----------------MIEHLVNLGKLDSALEVFSALPLMRIKR------------------------------  240 (638)
Q Consensus       209 --ty~~----------------li~~~~~~g~~~~A~~~~~~m~~~g~~p------------------------------  240 (638)
                        ....                -..-+.+.|+++.|.+++.-..+..-+.                              
T Consensus       403 dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~a  482 (840)
T KOG2003|consen  403 DWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIA  482 (840)
T ss_pred             HHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHH
Confidence              0000                0123678888888877776554321110                              


Q ss_pred             -CHhHHHHHH-----HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHhCcCccccccccc
Q 006615          241 -TSKQYLILV-----EGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYY  314 (638)
Q Consensus       241 -~~~~~~~li-----~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  314 (638)
                       +..-||.-.     +....+|++++|.+.|++....+-.-....+++-..+...|++++|++.|-.+..          
T Consensus       483 ln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~----------  552 (840)
T KOG2003|consen  483 LNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHA----------  552 (840)
T ss_pred             hcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHH----------
Confidence             111111110     1112357888888888888766544444556666677888888888888765510          


Q ss_pred             cCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChhHHHHHHH
Q 006615          315 EDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFC  394 (638)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  394 (638)
                                                            +......+            ..-++..+....+..+|++++.
T Consensus       553 --------------------------------------il~nn~ev------------l~qianiye~led~aqaie~~~  582 (840)
T KOG2003|consen  553 --------------------------------------ILLNNAEV------------LVQIANIYELLEDPAQAIELLM  582 (840)
T ss_pred             --------------------------------------HHHhhHHH------------HHHHHHHHHHhhCHHHHHHHHH
Confidence                                                  00000000            0114455566677888888887


Q ss_pred             HHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCC
Q 006615          395 WVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPI  474 (638)
Q Consensus       395 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~  474 (638)
                      +.  .+-++-|+...+.|...|-+.|+-.+|...+-+--.. ++.+..+..-|..-|....-+++|+.+|++..     .
T Consensus       583 q~--~slip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaa-----l  654 (840)
T KOG2003|consen  583 QA--NSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAA-----L  654 (840)
T ss_pred             Hh--cccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH-----h
Confidence            64  3445567888999999999999999998887654332 34467777777777888888999999999865     3


Q ss_pred             cchhHHHHHHHHHHHHH-ccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 006615          475 SKFKLMLLYSSLLRTLT-KCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR  542 (638)
Q Consensus       475 ~~~~~~~~~~~li~~~~-~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~  542 (638)
                      .+|+. .-|..||..|. +.|++++|.++++..... ++-|..+...|++.+...|. .++.+.-+.+.
T Consensus       655 iqp~~-~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl-~d~key~~kle  720 (840)
T KOG2003|consen  655 IQPNQ-SKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL-KDAKEYADKLE  720 (840)
T ss_pred             cCccH-HHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc-hhHHHHHHHHH
Confidence            47775 78999887655 589999999999998764 56688899999999888885 34555554444

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.26  E-value=2.5e-09  Score=106.62  Aligned_cols=283  Identities=13%  Similarity=0.044  Sum_probs=188.6

Q ss_pred             CHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCCHH-HHHH
Q 006615          152 DLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG--AIPNSRTYTVMIEHLVNLGKLD-SALE  228 (638)
Q Consensus       152 ~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~ty~~li~~~~~~g~~~-~A~~  228 (638)
                      +..+|...|+.+... +.-+.....-+..+|...+++++|.++|+..++..  ..-+..+|.+.+-.+-+.=.+. -|..
T Consensus       334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~  412 (638)
T KOG1126|consen  334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD  412 (638)
T ss_pred             HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence            345677777765543 22233444555666777777777777777776631  0115667777665443322211 1233


Q ss_pred             HHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHhCcCccc
Q 006615          229 VFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRI  308 (638)
Q Consensus       229 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~  308 (638)
                      +.+.++     -...+|-++.++|.-.++.+.|++.|++..+.+  |+                                
T Consensus       413 Li~~~~-----~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld--p~--------------------------------  453 (638)
T KOG1126|consen  413 LIDTDP-----NSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD--PR--------------------------------  453 (638)
T ss_pred             HHhhCC-----CCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC--Cc--------------------------------
Confidence            333332     244667777777777777777777777765532  21                                


Q ss_pred             cccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChhH
Q 006615          309 KNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPET  388 (638)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (638)
                                                                                                      
T Consensus       454 --------------------------------------------------------------------------------  453 (638)
T KOG1126|consen  454 --------------------------------------------------------------------------------  453 (638)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH---HHHHHHcccCCHHHHHHHHH
Q 006615          389 AWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIR---LIIDFYGISKKADAALKAFH  465 (638)
Q Consensus       389 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~---~li~~~~~~g~~~~A~~~~~  465 (638)
                                      ...+|+-+-.-+.....+|+|...|+....    +|+..|+   .+...|.|.++++.|+-.|+
T Consensus       454 ----------------faYayTLlGhE~~~~ee~d~a~~~fr~Al~----~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fq  513 (638)
T KOG1126|consen  454 ----------------FAYAYTLLGHESIATEEFDKAMKSFRKALG----VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQ  513 (638)
T ss_pred             ----------------cchhhhhcCChhhhhHHHHhHHHHHHhhhc----CCchhhHHHHhhhhheeccchhhHHHHHHH
Confidence                            223333333344555667777777776553    3444444   45678999999999999999


Q ss_pred             hchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 006615          466 DDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNG  545 (638)
Q Consensus       466 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~  545 (638)
                      .+.+.     .|...+....+...+-+.|+.++|++++++.....-+ |..+--.-...+...+++++|+..++++++. 
T Consensus       514 kA~~I-----NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~eal~~LEeLk~~-  586 (638)
T KOG1126|consen  514 KAVEI-----NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVEALQELEELKEL-  586 (638)
T ss_pred             hhhcC-----CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHHHHHHHHHHHHh-
Confidence            98865     4444577788888899999999999999999886433 4444444556667789999999999999974 


Q ss_pred             CCCCHhhHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHccC
Q 006615          546 VEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKIND  604 (638)
Q Consensus       546 ~~p~~~~~~~li~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~  604 (638)
                       .|+                      +...|-.+...|.+.|+.+.|..-|..+.+.++
T Consensus       587 -vP~----------------------es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp  622 (638)
T KOG1126|consen  587 -VPQ----------------------ESSVFALLGKIYKRLGNTDLALLHFSWALDLDP  622 (638)
T ss_pred             -Ccc----------------------hHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence             344                      355678888999999999999999998887665

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.24  E-value=2.6e-07  Score=88.37  Aligned_cols=213  Identities=13%  Similarity=0.014  Sum_probs=117.4

Q ss_pred             HHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhH--HHHHHHHHhcCC
Q 006615           75 ALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNF--MNLMQWYSTSGD  152 (638)
Q Consensus        75 ~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~--~~ll~~~~~~g~  152 (638)
                      .+...|....|...|......-++  .-..|-.|...+   .+.+.+..+.    . +.+.+....  --+..+|-....
T Consensus       173 v~k~~~~~s~A~~sfv~~v~~~P~--~W~AWleL~~li---t~~e~~~~l~----~-~l~~~~h~M~~~F~~~a~~el~q  242 (559)
T KOG1155|consen  173 VLKELGLLSLAIDSFVEVVNRYPW--FWSAWLELSELI---TDIEILSILV----V-GLPSDMHWMKKFFLKKAYQELHQ  242 (559)
T ss_pred             HHHhhchHHHHHHHHHHHHhcCCc--chHHHHHHHHhh---chHHHHHHHH----h-cCcccchHHHHHHHHHHHHHHHH
Confidence            455677788888888877754222  222333333322   2222222221    1 111111111  124455666667


Q ss_pred             HHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHcCCHHH-HHHH
Q 006615          153 LELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAI--PNSRTYTVMIEHLVNLGKLDS-ALEV  229 (638)
Q Consensus       153 ~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~ty~~li~~~~~~g~~~~-A~~~  229 (638)
                      .+++.+=.+.....|.+.+...-+-...+.-...+++.|..+|+++.+...-  -|..+|..++-.--...++.- |..+
T Consensus       243 ~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v  322 (559)
T KOG1155|consen  243 HEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNV  322 (559)
T ss_pred             HHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHH
Confidence            7778777777777776544444344444455667888888888888876211  167777776644333222222 2222


Q ss_pred             HHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHh
Q 006615          230 FSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREM  302 (638)
Q Consensus       230 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~  302 (638)
                      +. +.    +--..|..++.+.|+-.++.++|...|++..+.+..-..++..+.+-|....+...|.+-++..
T Consensus       323 ~~-id----KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrA  390 (559)
T KOG1155|consen  323 SN-ID----KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRA  390 (559)
T ss_pred             HH-hc----cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence            21 11    1223455566667777777777777777777766555555555566666666666666666554

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.23  E-value=5.1e-08  Score=88.83  Aligned_cols=291  Identities=13%  Similarity=0.090  Sum_probs=170.1

Q ss_pred             CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHh------HHHHHHHHHHccCCHH
Q 006615          186 GKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSK------QYLILVEGFVGVERFD  259 (638)
Q Consensus       186 g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------~~~~li~~~~~~g~~~  259 (638)
                      .+.++|.++|-+|.+... -+..+--+|-+.|-+.|..|.|.++.+.+.+   .||..      ..-.|..-|...|-+|
T Consensus        49 ~Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~---spdlT~~qr~lAl~qL~~Dym~aGl~D  124 (389)
T COG2956          49 NQPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE---SPDLTFEQRLLALQQLGRDYMAAGLLD  124 (389)
T ss_pred             cCcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhc---CCCCchHHHHHHHHHHHHHHHHhhhhh
Confidence            567777777777776311 1333444666777777778888777777665   34432      2334555666777788


Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCCCcccccccc
Q 006615          260 EAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQ  339 (638)
Q Consensus       260 ~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (638)
                      .|..+|..+.+.|.....+.-.++..|....+|++|++.-+++.+.+..+                              
T Consensus       125 RAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~------------------------------  174 (389)
T COG2956         125 RAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQT------------------------------  174 (389)
T ss_pred             HHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcc------------------------------
Confidence            88888877777665555555667777777777777777665543211000                              


Q ss_pred             ccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhc
Q 006615          340 LKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARH  419 (638)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~  419 (638)
                                                                                  .+ .-=...|+-+...+...
T Consensus       175 ------------------------------------------------------------~~-~eIAqfyCELAq~~~~~  193 (389)
T COG2956         175 ------------------------------------------------------------YR-VEIAQFYCELAQQALAS  193 (389)
T ss_pred             ------------------------------------------------------------ch-hHHHHHHHHHHHHHhhh
Confidence                                                                        00 00122355566666666


Q ss_pred             CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhH-HHHHHHHHHHHHccCChHH
Q 006615          420 GHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKL-MLLYSSLLRTLTKCKRDFD  498 (638)
Q Consensus       420 g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~  498 (638)
                      .+++.|..++.+..+.+.+ ++..--.+.+.+...|+++.|.+.++.+.+.     +|+. ..+-..|..+|.+.|+.++
T Consensus       194 ~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-----n~~yl~evl~~L~~~Y~~lg~~~~  267 (389)
T COG2956         194 SDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQ-----NPEYLSEVLEMLYECYAQLGKPAE  267 (389)
T ss_pred             hhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHh-----ChHHHHHHHHHHHHHHHHhCCHHH
Confidence            7777788888777766543 2223234456667777777777777776654     2221 2455667777888888888


Q ss_pred             HHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHHhhhCCCCCCHHHHHH
Q 006615          499 AINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKEL  578 (638)
Q Consensus       499 A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~m~~~g~~p~~~~~~~  578 (638)
                      ....+.++.+..  ++...-+.+-.--....-.+.|...+.+-.+.                         .|+...+..
T Consensus       268 ~~~fL~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r-------------------------~Pt~~gf~r  320 (389)
T COG2956         268 GLNFLRRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLRR-------------------------KPTMRGFHR  320 (389)
T ss_pred             HHHHHHHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh-------------------------CCcHHHHHH
Confidence            888777777653  23333333333222233334444444433332                         455555555


Q ss_pred             HHHHHh---ccCcHHHHHHHHHHHHHccC
Q 006615          579 LKKSLW---KEGRRKEAAAVEERCEKIND  604 (638)
Q Consensus       579 li~~~~---~~g~~~~A~~~~~~~~~~~~  604 (638)
                      |+..-.   ..|...+-.-+++.|.....
T Consensus       321 l~~~~l~daeeg~~k~sL~~lr~mvge~l  349 (389)
T COG2956         321 LMDYHLADAEEGRAKESLDLLRDMVGEQL  349 (389)
T ss_pred             HHHhhhccccccchhhhHHHHHHHHHHHH
Confidence            555433   34556677777777766544

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.18  E-value=6.8e-08  Score=88.05  Aligned_cols=286  Identities=13%  Similarity=0.101  Sum_probs=184.3

Q ss_pred             cCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHHcCCH
Q 006615          150 SGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNS------RTYTVMIEHLVNLGKL  223 (638)
Q Consensus       150 ~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~ty~~li~~~~~~g~~  223 (638)
                      ..+.++|.++|-+|.+.+ +-+..+--+|-+.|-+.|..+.|+++-+.+.++   ||.      ...-.|..-|...|-+
T Consensus        48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~  123 (389)
T COG2956          48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL  123 (389)
T ss_pred             hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence            467788888888888754 334556667778888888888888888888775   442      2233455668888999


Q ss_pred             HHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH----H-HHHHHHHHcCChHHHHHH
Q 006615          224 DSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM----R-VALERMQEMGFIQGANEF  298 (638)
Q Consensus       224 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~----~-~ll~~~~~~g~~~~a~~~  298 (638)
                      |.|+++|..+.+.| +--....-.|+..|-...++++|+++-+++.+.+-.+...-    | .+-..+....+.+.|..+
T Consensus       124 DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~  202 (389)
T COG2956         124 DRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL  202 (389)
T ss_pred             hHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence            99999998887644 22344567788889999999999999988888776665422    2 344444445556666665


Q ss_pred             HHHhCcCccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHH
Q 006615          299 LREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCK  378 (638)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (638)
                      ++.....+                                                            +.          
T Consensus       203 l~kAlqa~------------------------------------------------------------~~----------  212 (389)
T COG2956         203 LKKALQAD------------------------------------------------------------KK----------  212 (389)
T ss_pred             HHHHHhhC------------------------------------------------------------cc----------
Confidence            55442110                                                            00          


Q ss_pred             HHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHH
Q 006615          379 VLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKAD  458 (638)
Q Consensus       379 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~  458 (638)
                                                .+..--.+-+.....|+++.|.+.++...+.+...-+.+...|..+|...|+.+
T Consensus       213 --------------------------cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~  266 (389)
T COG2956         213 --------------------------CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPA  266 (389)
T ss_pred             --------------------------ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHH
Confidence                                      111112334456667777777777777777776666667777777888888888


Q ss_pred             HHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHcc---CCHHHHH
Q 006615          459 AALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQ---GDEKIVQ  535 (638)
Q Consensus       459 ~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~---g~~~~a~  535 (638)
                      +....+..+.+....   ++   .-..+-..-....-.+.|...+.+-...  +|+...+..||..-..-   |...+-.
T Consensus       267 ~~~~fL~~~~~~~~g---~~---~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL  338 (389)
T COG2956         267 EGLNFLRRAMETNTG---AD---AELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESL  338 (389)
T ss_pred             HHHHHHHHHHHccCC---cc---HHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhH
Confidence            877777776654221   11   2222222222334455666655555444  69999999999866543   4456666


Q ss_pred             HHHHHHHhC
Q 006615          536 KLFSMVRQN  544 (638)
Q Consensus       536 ~l~~~m~~~  544 (638)
                      -+++.|...
T Consensus       339 ~~lr~mvge  347 (389)
T COG2956         339 DLLRDMVGE  347 (389)
T ss_pred             HHHHHHHHH
Confidence            667777654

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.18  E-value=5.7e-06  Score=79.59  Aligned_cols=404  Identities=8%  Similarity=0.006  Sum_probs=249.0

Q ss_pred             HHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHH
Q 006615           75 ALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLE  154 (638)
Q Consensus        75 ~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~  154 (638)
                      .=.+......|..+|+.+...- -..| ..|-..+..--..|++..|+++|++..+  ..|+...|++.|+.=.+....+
T Consensus       116 ~Emknk~vNhARNv~dRAvt~l-PRVd-qlWyKY~ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeie  191 (677)
T KOG1915|consen  116 FEMKNKQVNHARNVWDRAVTIL-PRVD-QLWYKYIYMEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIE  191 (677)
T ss_pred             HHHhhhhHhHHHHHHHHHHHhc-chHH-HHHHHHHHHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHH
Confidence            3345566777777777666431 0111 2344444444556777777777776665  4677777777777777777777


Q ss_pred             HHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHc-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 006615          155 LVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE-GA-IPNSRTYTVMIEHLVNLGKLDSALEVFSA  232 (638)
Q Consensus       155 ~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~-~p~~~ty~~li~~~~~~g~~~~A~~~~~~  232 (638)
                      .|..++++..-.  .|++.+|--...-=-++|++..|..+|+...+. |- ..+...|++....=.++..++.|.-+|.-
T Consensus       192 raR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iyky  269 (677)
T KOG1915|consen  192 RARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKY  269 (677)
T ss_pred             HHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777777777653  367777776666666777777777777766653 10 01122233333333345556666666654


Q ss_pred             cccCCCccC--HhHHHHHHHHHHccCCHHHHHHH--------HHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHh
Q 006615          233 LPLMRIKRT--SKQYLILVEGFVGVERFDEAKSL--------LNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREM  302 (638)
Q Consensus       233 m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~l--------~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~  302 (638)
                      .... ++.+  ...|......--+.|+.....+.        |+++.+.+.....+++..+..-...|+.+...++++..
T Consensus       270 Ald~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErA  348 (677)
T KOG1915|consen  270 ALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERA  348 (677)
T ss_pred             HHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            4432 1111  33454444444445554333322        44455555555556666666666678888887777765


Q ss_pred             CcCccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhc
Q 006615          303 LPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRH  382 (638)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (638)
                      ..+-...                                   ..+.              .-...-..|....+ ..--.
T Consensus       349 Ianvpp~-----------------------------------~ekr--------------~W~RYIYLWinYal-yeEle  378 (677)
T KOG1915|consen  349 IANVPPA-----------------------------------SEKR--------------YWRRYIYLWINYAL-YEELE  378 (677)
T ss_pred             HccCCch-----------------------------------hHHH--------------HHHHHHHHHHHHHH-HHHHH
Confidence            4221100                                   0000              00011111211111 01113


Q ss_pred             cCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHH----hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHH
Q 006615          383 FKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILA----RHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKAD  458 (638)
Q Consensus       383 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~----~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~  458 (638)
                      ..+.+.+.++|+....  -+++..+||..+--.|+    ++.++..|.+++...+  |..|-..+|...|..=.+.+.+|
T Consensus       379 ~ed~ertr~vyq~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efD  454 (677)
T KOG1915|consen  379 AEDVERTRQVYQACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFD  454 (677)
T ss_pred             hhhHHHHHHHHHHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHH
Confidence            5778888899987754  44556667766655554    5678999999988776  67788899999999889999999


Q ss_pred             HHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCC-CCcchhhHHHHHHHHHccCCHHHHHHH
Q 006615          459 AALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSG-IVPDVQTFSGLMYHFALQGDEKIVQKL  537 (638)
Q Consensus       459 ~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~li~~~~~~g~~~~a~~l  537 (638)
                      .+..+++...+-     .|..-.+|.-....=...|+.+.|..+|+-.+.+. +......|-+.|.-=...|.++.|..+
T Consensus       455 RcRkLYEkfle~-----~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~L  529 (677)
T KOG1915|consen  455 RCRKLYEKFLEF-----SPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARAL  529 (677)
T ss_pred             HHHHHHHHHHhc-----ChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHH
Confidence            999999987764     34434778877777778899999999999988742 122344555556655678999999999


Q ss_pred             HHHHHhC
Q 006615          538 FSMVRQN  544 (638)
Q Consensus       538 ~~~m~~~  544 (638)
                      ++.+.+.
T Consensus       530 YerlL~r  536 (677)
T KOG1915|consen  530 YERLLDR  536 (677)
T ss_pred             HHHHHHh
Confidence            9999875

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.18  E-value=7.2e-06  Score=81.89  Aligned_cols=473  Identities=12%  Similarity=0.104  Sum_probs=265.8

Q ss_pred             HHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCC
Q 006615           73 THALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGD  152 (638)
Q Consensus        73 ~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~  152 (638)
                      +..+...|+.......|+.....-++.--...|...++.....+-++.+.+++++.++.  .|  ..-+--+..+++.++
T Consensus       109 lq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P--~~~eeyie~L~~~d~  184 (835)
T KOG2047|consen  109 LQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--AP--EAREEYIEYLAKSDR  184 (835)
T ss_pred             HHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CH--HHHHHHHHHHHhccc
Confidence            34555677777777777766543223222336777777777777777777887777763  22  224556777777777


Q ss_pred             HHHHHHHHHHHHhcC------CC------------------------------------CC--HHhHHHHHHHHHhcCCh
Q 006615          153 LELVLSTWNEYRQRA------KL------------------------------------LS--TESYNIVMSVYAKTGKN  188 (638)
Q Consensus       153 ~~~A~~l~~~m~~~~------~~------------------------------------p~--~~~~~~li~~~~~~g~~  188 (638)
                      +++|.+.+.......      -+                                    +|  ...|++|.+-|.+.|.+
T Consensus       185 ~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~  264 (835)
T KOG2047|consen  185 LDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLF  264 (835)
T ss_pred             hHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhh
Confidence            777776665543211      01                                    11  12477777777777777


Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC----------------------HHHHHHHHHhcccCC-C-------
Q 006615          189 FEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGK----------------------LDSALEVFSALPLMR-I-------  238 (638)
Q Consensus       189 ~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~----------------------~~~A~~~~~~m~~~g-~-------  238 (638)
                      ++|..+|++-...  ..+..-|+.+.++|+....                      ++-...-|+.+...+ +       
T Consensus       265 ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlL  342 (835)
T KOG2047|consen  265 EKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLL  342 (835)
T ss_pred             HHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHH
Confidence            7777777776663  2345556666666653221                      111112222221110 0       


Q ss_pred             ---ccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-------CHHHHHHHHHHHHcCChHHHHHHHHHhCcCccc
Q 006615          239 ---KRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP-------GRAMRVALERMQEMGFIQGANEFLREMLPDKRI  308 (638)
Q Consensus       239 ---~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~  308 (638)
                         .-++..|..-+  -+..|+..+....|.+..+. +.|       ...+.....-|-..|+++.|..+|++..+-...
T Consensus       343 RQn~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~  419 (835)
T KOG2047|consen  343 RQNPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYK  419 (835)
T ss_pred             hcCCccHHHHHhhh--hhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCcc
Confidence               01122222221  12245666667777776542 222       223346667788889999999999876432211


Q ss_pred             cccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChhH
Q 006615          309 KNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPET  388 (638)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (638)
                      .-                                    ..+..                  +|  ...+.+-.....++.
T Consensus       420 ~v------------------------------------~dLa~------------------vw--~~waemElrh~~~~~  443 (835)
T KOG2047|consen  420 TV------------------------------------EDLAE------------------VW--CAWAEMELRHENFEA  443 (835)
T ss_pred             ch------------------------------------HHHHH------------------HH--HHHHHHHHhhhhHHH
Confidence            00                                    00000                  01  011222223445555


Q ss_pred             HHHHHHHHhcCCC----------C------cCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Q 006615          389 AWHFFCWVAYQPG----------Y------THDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYG  452 (638)
Q Consensus       389 a~~~~~~~~~~~~----------~------~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~  452 (638)
                      |+.+......-+.          .      .-+...|+..++.--..|-++....+++.+.+..+. ++.........+-
T Consensus       444 Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLE  522 (835)
T KOG2047|consen  444 ALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLE  522 (835)
T ss_pred             HHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHH
Confidence            5555544322110          0      113445666777777788999999999999988765 3332222222233


Q ss_pred             ccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHc---cCChHHHHHHHHHHHhCCCCcchhhHHHHHHHH--Hc
Q 006615          453 ISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTK---CKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHF--AL  527 (638)
Q Consensus       453 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~--~~  527 (638)
                      ...-+++++++|++-...   .+.|+.-..|+.-+.-+.+   ...++.|..+|++..+ |++|...-+--|+-+=  -+
T Consensus       523 eh~yfeesFk~YErgI~L---Fk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe  598 (835)
T KOG2047|consen  523 EHKYFEESFKAYERGISL---FKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEE  598 (835)
T ss_pred             hhHHHHHHHHHHHcCCcc---CCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHH
Confidence            455689999999986665   3456666789888877765   3468999999999998 7777654333333222  24


Q ss_pred             cCCHHHHHHHHHHHHhCCCCCC--HhhHHHHHHHHHHH----------hhhCCCCCCHHHH---HHHHHHHhccCcHHHH
Q 006615          528 QGDEKIVQKLFSMVRQNGVEPD--AYMFKVLIQAYCKY----------LSNSNLMPDAATK---ELLKKSLWKEGRRKEA  592 (638)
Q Consensus       528 ~g~~~~a~~l~~~m~~~~~~p~--~~~~~~li~~~~~~----------m~~~g~~p~~~~~---~~li~~~~~~g~~~~A  592 (638)
                      .|-...|+.++++... ++.+.  ...||..|.--...          -+.-..-||...-   -...+.=++.|.+++|
T Consensus       599 ~GLar~amsiyerat~-~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRA  677 (835)
T KOG2047|consen  599 HGLARHAMSIYERATS-AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRA  677 (835)
T ss_pred             hhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHH
Confidence            5778889999998665 34443  33455544333222          1111223443221   2223334678999999


Q ss_pred             HHHHHHHHHccCCCCcccccceeeeec
Q 006615          593 AAVEERCEKINDVPSLALRGHIWAVSS  619 (638)
Q Consensus       593 ~~~~~~~~~~~~~~~~~~~~~~w~~~~  619 (638)
                      ..++....+.  .+| ..++..|.+.+
T Consensus       678 RaIya~~sq~--~dP-r~~~~fW~twk  701 (835)
T KOG2047|consen  678 RAIYAHGSQI--CDP-RVTTEFWDTWK  701 (835)
T ss_pred             HHHHHhhhhc--CCC-cCChHHHHHHH
Confidence            9999886663  223 44555666543

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.17  E-value=2.1e-07  Score=87.61  Aligned_cols=194  Identities=7%  Similarity=0.076  Sum_probs=119.2

Q ss_pred             CCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHH
Q 006615           79 APNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLS  158 (638)
Q Consensus        79 ~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~  158 (638)
                      .|++..|.+......+. +-.|- ..|-.-..+....|+.+.+-+.+.+..+..-.++...+-+..+.....|+.+.|..
T Consensus        97 eG~~~qAEkl~~rnae~-~e~p~-l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~  174 (400)
T COG3071          97 EGDFQQAEKLLRRNAEH-GEQPV-LAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE  174 (400)
T ss_pred             cCcHHHHHHHHHHhhhc-CcchH-HHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence            46777777777665433 22222 13444444455667777777777777665334455555566666777777777777


Q ss_pred             HHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHH
Q 006615          159 TWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPN-------SRTYTVMIEHLVNLGKLDSALEVFS  231 (638)
Q Consensus       159 l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-------~~ty~~li~~~~~~g~~~~A~~~~~  231 (638)
                      -.+++.+.+ +.+.........+|.+.|++.....++..|.+.|+--|       ..+|+.+++-....+..+.-...++
T Consensus       175 ~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~  253 (400)
T COG3071         175 NVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK  253 (400)
T ss_pred             HHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence            777766654 33466677777777777777777777777777665433       2355666665555555555555666


Q ss_pred             hcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 006615          232 ALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG  276 (638)
Q Consensus       232 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~  276 (638)
                      ..+.. .+.+...-.+++.-+.++|+.++|.++..+..+.+..|.
T Consensus       254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~  297 (400)
T COG3071         254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR  297 (400)
T ss_pred             hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh
Confidence            55532 233455556666667777777777777777766665554

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.17  E-value=1.4e-07  Score=90.81  Aligned_cols=210  Identities=15%  Similarity=0.025  Sum_probs=158.1

Q ss_pred             ccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHH
Q 006615          382 HFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAAL  461 (638)
Q Consensus       382 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~  461 (638)
                      ..|+...|.+-|+.......-.+  ..|--+...|....+.++....|++..+.+.. |+.+|..-.+.+.-.+++++|.
T Consensus       338 L~g~~~~a~~d~~~~I~l~~~~~--~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~  414 (606)
T KOG0547|consen  338 LKGDSLGAQEDFDAAIKLDPAFN--SLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAI  414 (606)
T ss_pred             hcCCchhhhhhHHHHHhcCcccc--hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHH
Confidence            36888888888888764432222  22777778899999999999999999887755 6778888888888889999999


Q ss_pred             HHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHH
Q 006615          462 KAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMV  541 (638)
Q Consensus       462 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m  541 (638)
                      .=|++....     .|+.+..|-.+..+..+.+++++++..|++.++. ++--...||.....+...+++++|.+.|+..
T Consensus       415 aDF~Kai~L-----~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~a  488 (606)
T KOG0547|consen  415 ADFQKAISL-----DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKA  488 (606)
T ss_pred             HHHHHHhhc-----ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHH
Confidence            999998865     6776788888888888999999999999999986 3445678999999999999999999999988


Q ss_pred             HhCCCCCC-------Hhh--HHHHHHHHHHH-------hh--hCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHc
Q 006615          542 RQNGVEPD-------AYM--FKVLIQAYCKY-------LS--NSNLMPD-AATKELLKKSLWKEGRRKEAAAVEERCEKI  602 (638)
Q Consensus       542 ~~~~~~p~-------~~~--~~~li~~~~~~-------m~--~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~  602 (638)
                      ++.  .|+       ..+  --+++..-=+.       +.  ...+.|- ...|..|.......|++++|+++|++....
T Consensus       489 i~L--E~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~l  566 (606)
T KOG0547|consen  489 IEL--EPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQL  566 (606)
T ss_pred             Hhh--ccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            863  232       111  11111100000       22  2344443 456888999999999999999999986543

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.17  E-value=1.7e-06  Score=83.01  Aligned_cols=436  Identities=10%  Similarity=0.044  Sum_probs=252.7

Q ss_pred             CCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCch-HhHHHHHHHHHhcCCHHHHH
Q 006615           79 APNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVS-VNFMNLMQWYSTSGDLELVL  157 (638)
Q Consensus        79 ~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~A~  157 (638)
                      .+++..|.++|+.+....  ..+...|-..+..-.+...+..|+.++++....  .|.+ ..|--.+.+=-..|++..|.
T Consensus        86 q~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaR  161 (677)
T KOG1915|consen   86 QKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGAR  161 (677)
T ss_pred             HHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHH
Confidence            345666777777776543  223335656666666777777777777776653  2222 22444444445567777777


Q ss_pred             HHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccC-
Q 006615          158 STWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLM-  236 (638)
Q Consensus       158 ~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~-  236 (638)
                      ++|++-.+  ..|+..+|++.|+-=.+.+.++.|..+|++.+-  +.|++.+|---.+.=.+.|...-|.++|+...+. 
T Consensus       162 qiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~  237 (677)
T KOG1915|consen  162 QIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFL  237 (677)
T ss_pred             HHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence            77777665  457777777777777777777777777777765  3477777777666667777777777777765541 


Q ss_pred             CC-ccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHH-HcCChHHHHHHH---HHhCcCccc
Q 006615          237 RI-KRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM---RVALERMQ-EMGFIQGANEFL---REMLPDKRI  308 (638)
Q Consensus       237 g~-~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~---~~ll~~~~-~~g~~~~a~~~~---~~~~~~~~~  308 (638)
                      |- .-+...+.+....-.++..++.|.-+|+-..+.  .|...+   +.-...+- +-|+.....+.+   +.++     
T Consensus       238 ~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~--~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~q-----  310 (677)
T KOG1915|consen  238 GDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH--IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQ-----  310 (677)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhH-----
Confidence            10 011222333333333455666666666655443  232222   21111121 223322222211   0110     


Q ss_pred             cccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccc-hHHHHHHHhccCChh
Q 006615          309 KNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWT-TRLVCKVLRHFKSPE  387 (638)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  387 (638)
                                                                         --..+..++..+. -.....+....|+.+
T Consensus       311 ---------------------------------------------------YE~~v~~np~nYDsWfdylrL~e~~g~~~  339 (677)
T KOG1915|consen  311 ---------------------------------------------------YEKEVSKNPYNYDSWFDYLRLEESVGDKD  339 (677)
T ss_pred             ---------------------------------------------------HHHHHHhCCCCchHHHHHHHHHHhcCCHH
Confidence                                                               0001111111111 111233344457777


Q ss_pred             HHHHHHHHHhcCCCCcCCHH--HHHHHH----H-HH---HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc----c
Q 006615          388 TAWHFFCWVAYQPGYTHDVY--ALEKML----T-IL---ARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYG----I  453 (638)
Q Consensus       388 ~a~~~~~~~~~~~~~~p~~~--~~~~li----~-~~---~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~----~  453 (638)
                      ...++|+...  .+++|-..  .|.-.|    . +|   ....+++.+.++++...+ =++-...||..+=-+|+    +
T Consensus       340 ~Ire~yErAI--anvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lIPHkkFtFaKiWlmyA~feIR  416 (677)
T KOG1915|consen  340 RIRETYERAI--ANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LIPHKKFTFAKIWLMYAQFEIR  416 (677)
T ss_pred             HHHHHHHHHH--ccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHHHHH
Confidence            7888887764  33344221  122111    1 11   234677777778777766 23334466665544444    4


Q ss_pred             cCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHH
Q 006615          454 SKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKI  533 (638)
Q Consensus       454 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~  533 (638)
                      +.++..|.+++......     .|.. .+|-.-|..=.+.+.++.+..++++.++-+ +-|..+|.-...-=...|+.+.
T Consensus       417 q~~l~~ARkiLG~AIG~-----cPK~-KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdR  489 (677)
T KOG1915|consen  417 QLNLTGARKILGNAIGK-----CPKD-KLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDR  489 (677)
T ss_pred             HcccHHHHHHHHHHhcc-----CCch-hHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHH
Confidence            66777888887776544     2222 567777777778888888888888888764 2366777776666667788888


Q ss_pred             HHHHHHHHHhCCCCCCHhhHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHccCCCCcccccc
Q 006615          534 VQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLALRGH  613 (638)
Q Consensus       534 a~~l~~~m~~~~~~p~~~~~~~li~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  613 (638)
                      |..+|+-.++..   .                   +..-...|.+.|+-=...|.++.|..+++++.+...      ...
T Consensus       490 aRaifelAi~qp---~-------------------ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~------h~k  541 (677)
T KOG1915|consen  490 ARAIFELAISQP---A-------------------LDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQ------HVK  541 (677)
T ss_pred             HHHHHHHHhcCc---c-------------------cccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcc------cch
Confidence            888888777632   1                   122345677777777899999999999999988654      444


Q ss_pred             eeeee
Q 006615          614 IWAVS  618 (638)
Q Consensus       614 ~w~~~  618 (638)
                      .|..+
T Consensus       542 vWisF  546 (677)
T KOG1915|consen  542 VWISF  546 (677)
T ss_pred             HHHhH
Confidence            77764

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.11  E-value=5.9e-08  Score=91.05  Aligned_cols=197  Identities=14%  Similarity=0.162  Sum_probs=125.1

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH
Q 006615          102 QSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSV  181 (638)
Q Consensus       102 ~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~  181 (638)
                      ...+..+...+...|++++|...+++..+.. +.+...+..+...|...|++++|.+.+++..+.+ +.+...+..+...
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~  108 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF  108 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence            3455666666677777777777777666542 3344556666777777777777777777776653 3345566666777


Q ss_pred             HHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHH
Q 006615          182 YAKTGKNFEAVETFRQVIDEGAIP-NSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDE  260 (638)
Q Consensus       182 ~~~~g~~~~A~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~  260 (638)
                      +...|++++|.+.|++.......| ....+..+...+...|++++|.+.|++..+.. ..+...+..+...+...|++++
T Consensus       109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~  187 (234)
T TIGR02521       109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD  187 (234)
T ss_pred             HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence            777777777777777776542222 33455556666777777777777777766532 2234566667777777777777


Q ss_pred             HHHHHHHHHhCCCCCCHHH-HHHHHHHHHcCChHHHHHHHHHh
Q 006615          261 AKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREM  302 (638)
Q Consensus       261 A~~l~~~m~~~g~~p~~~~-~~ll~~~~~~g~~~~a~~~~~~~  302 (638)
                      |...+++..... ..+... ......+...|+.++|..+.+.+
T Consensus       188 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  229 (234)
T TIGR02521       188 ARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQL  229 (234)
T ss_pred             HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            777777776652 122222 24455666777777777766655

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.07  E-value=8e-08  Score=90.12  Aligned_cols=196  Identities=9%  Similarity=0.027  Sum_probs=159.9

Q ss_pred             HHHHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHh
Q 006615           70 FIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYST  149 (638)
Q Consensus        70 ~~~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~  149 (638)
                      ..+...+...|++++|+..|+.+.+..  +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+..
T Consensus        35 ~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~  111 (234)
T TIGR02521        35 VQLALGYLEQGDLEVAKENLDKALEHD--PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQ  111 (234)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHH
Confidence            335678889999999999999987653  2345577888888999999999999999988754 3455667888899999


Q ss_pred             cCCHHHHHHHHHHHHhcCC-CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 006615          150 SGDLELVLSTWNEYRQRAK-LLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALE  228 (638)
Q Consensus       150 ~g~~~~A~~l~~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~  228 (638)
                      .|++++|...|++...... ......+..+...+...|++++|...|++..+... .+...+..+...+...|++++|.+
T Consensus       112 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~  190 (234)
T TIGR02521       112 QGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRGQYKDARA  190 (234)
T ss_pred             cccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcCCHHHHHH
Confidence            9999999999999986532 22355677788889999999999999999988532 256788889999999999999999


Q ss_pred             HHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006615          229 VFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRD  270 (638)
Q Consensus       229 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~  270 (638)
                      .+++..+. ...+...+..+...+...|+.++|..+.+.+..
T Consensus       191 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  231 (234)
T TIGR02521       191 YLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK  231 (234)
T ss_pred             HHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            99998775 234567777888889999999999999888754

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK12370 invasion protein regulator; Provisional

Probab=99.07  E-value=8.7e-08  Score=101.47  Aligned_cols=266  Identities=14%  Similarity=0.045  Sum_probs=154.2

Q ss_pred             CCHHhHHHHHHHHHh-----cCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH---------HcCCHHHHHHHHHhcc
Q 006615          170 LSTESYNIVMSVYAK-----TGKNFEAVETFRQVIDEGAIPN-SRTYTVMIEHLV---------NLGKLDSALEVFSALP  234 (638)
Q Consensus       170 p~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~-~~ty~~li~~~~---------~~g~~~~A~~~~~~m~  234 (638)
                      .+...|...+.+...     .+.+++|.++|++..+.  .|+ ...|..+..+|.         ..+++++|...+++..
T Consensus       254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al  331 (553)
T PRK12370        254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT  331 (553)
T ss_pred             CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence            445555555555321     23567777777777763  443 344444443332         2234677777777776


Q ss_pred             cCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHhCcCccccccccc
Q 006615          235 LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYY  314 (638)
Q Consensus       235 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  314 (638)
                      +.. +-+...|..+...+...|++++|...|++..+.+.......+.+...+...|++++|...+++....         
T Consensus       332 ~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l---------  401 (553)
T PRK12370        332 ELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL---------  401 (553)
T ss_pred             hcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---------
Confidence            643 2256667777777777788888888888777654332233445556667777777777777665311         


Q ss_pred             cCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChhHHHHHHH
Q 006615          315 EDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFC  394 (638)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  394 (638)
                                                                                                      
T Consensus       402 --------------------------------------------------------------------------------  401 (553)
T PRK12370        402 --------------------------------------------------------------------------------  401 (553)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHhcCCCCcCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCC
Q 006615          395 WVAYQPGYTHD-VYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGP  473 (638)
Q Consensus       395 ~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~  473 (638)
                              .|+ ...+..++..+...|++++|...+++......+-+...+..+..+|...|+.++|...+.++...   
T Consensus       402 --------~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~---  470 (553)
T PRK12370        402 --------DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ---  470 (553)
T ss_pred             --------CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc---
Confidence                    111 11222233345557788888888887765542224445666677777888888888888776543   


Q ss_pred             CcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhC-CCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 006615          474 ISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFS-GIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNG  545 (638)
Q Consensus       474 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~  545 (638)
                        .|+.....+.+...|+..|  ++|...++.+.+. +-.|....+..+  .+.-.|+-+.+... +++.+.|
T Consensus       471 --~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~-~~~~~~~  536 (553)
T PRK12370        471 --EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPL--VLVAHGEAIAEKMW-NKFKNED  536 (553)
T ss_pred             --cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHH--HHHHHhhhHHHHHH-HHhhccc
Confidence              2232345666666777777  4777777766552 123333333333  33445555555444 7777654

>PRK12370 invasion protein regulator; Provisional

Probab=99.05  E-value=8.1e-08  Score=101.73  Aligned_cols=144  Identities=12%  Similarity=0.040  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006615          153 LELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIP-NSRTYTVMIEHLVNLGKLDSALEVFS  231 (638)
Q Consensus       153 ~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~~~~  231 (638)
                      +++|...+++..+.+ +-+..+|..+...+...|++++|...|++..+.+  | +...+..+...+...|++++|...++
T Consensus       320 ~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~G~~~eAi~~~~  396 (553)
T PRK12370        320 MIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS--PISADIKYYYGWNLFMAGQLEEALQTIN  396 (553)
T ss_pred             HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            455555555555543 2344455555555555555555555555555532  3 23444455555555555555555555


Q ss_pred             hcccCCCccCH-hHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH-HH-HHHHHHHHHcCChHHHHHHHHHh
Q 006615          232 ALPLMRIKRTS-KQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AM-RVALERMQEMGFIQGANEFLREM  302 (638)
Q Consensus       232 ~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~~-~~ll~~~~~~g~~~~a~~~~~~~  302 (638)
                      +..+.  .|+. ..+..+...+...|++++|...+++..... .|+. .. ..+...+...|+.++|...+.++
T Consensus       397 ~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~  467 (553)
T PRK12370        397 ECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEI  467 (553)
T ss_pred             HHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence            55443  2321 122223333444555555555555554332 1211 11 23334445555555555555544

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.03  E-value=5.2e-06  Score=81.82  Aligned_cols=425  Identities=12%  Similarity=0.039  Sum_probs=277.2

Q ss_pred             CCCCHHHHHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHH----HHh---------C
Q 006615           65 RLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGD----ISS---------S  131 (638)
Q Consensus        65 ~~~~~~~~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~----~~~---------~  131 (638)
                      .+.+.+.+..+|.-.|.+++|..+...-.-   ..-|..........+.+...++.+..++..    ...         .
T Consensus        48 dp~d~~~~aq~l~~~~~y~ra~~lit~~~l---e~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~  124 (611)
T KOG1173|consen   48 DPADIYWLAQVLYLGRQYERAAHLITTYKL---EKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAAN  124 (611)
T ss_pred             ChHHHHHHHHHHHhhhHHHHHHHHHHHhhh---hhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhc
Confidence            455667788999999999998888775531   234555677777788888999999888872    110         0


Q ss_pred             CCCCchHh----HHH-----H--HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHH---HHHHh-------------
Q 006615          132 KFLNVSVN----FMN-----L--MQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVM---SVYAK-------------  184 (638)
Q Consensus       132 ~~~~~~~~----~~~-----l--l~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li---~~~~~-------------  184 (638)
                      -+.+|..-    -+.     .  -..|....+.++|...|.+....+    +..|..+.   .+..-             
T Consensus       125 ~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D----~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~  200 (611)
T KOG1173|consen  125 TLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLAD----AKCFEAFEKLVSAHMLTAQEEFELLESLD  200 (611)
T ss_pred             eeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcc----hhhHHHHHHHHHHHhcchhHHHHHHhccc
Confidence            01111110    001     1  123444456677777776655443    33333322   21111             


Q ss_pred             ----cCChHHHHHHHHHHH-----H------------cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHh
Q 006615          185 ----TGKNFEAVETFRQVI-----D------------EGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSK  243 (638)
Q Consensus       185 ----~g~~~~A~~~~~~m~-----~------------~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~  243 (638)
                          .+.-.+-++.+-+..     .            .|+.-+......-..-|-..+++.+..++++...+.. ++...
T Consensus       201 ~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~  279 (611)
T KOG1173|consen  201 LAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLP  279 (611)
T ss_pred             HHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcc
Confidence                011111111111111     0            0111122223333344566788888888888877643 45666


Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHhCcCccccccccccCCCCCccc
Q 006615          244 QYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDED  323 (638)
Q Consensus       244 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (638)
                      ++-.=|.++...|+..+-..+=.++.+.-..-...|+++.--|...|+..+|.+.|..-..                   
T Consensus       280 ~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~-------------------  340 (611)
T KOG1173|consen  280 CLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATT-------------------  340 (611)
T ss_pred             hHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhh-------------------
Confidence            6777778888889888888888888776655555677777777777999999999876521                   


Q ss_pred             cccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCCc
Q 006615          324 ENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYT  403 (638)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  403 (638)
                                                               .++.+......++..+...+..++|+..+....+--.-.
T Consensus       341 -----------------------------------------lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~  379 (611)
T KOG1173|consen  341 -----------------------------------------LDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGC  379 (611)
T ss_pred             -----------------------------------------cCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCC
Confidence                                                     123344445567778888889999887776654322111


Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCc--chhHHH
Q 006615          404 HDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPIS--KFKLML  481 (638)
Q Consensus       404 p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~  481 (638)
                      .-+..|.  -.-|.+.+.++.|.++|.+.....+ -|+...+-+.-.....+.+.+|..+|+...+......  .+....
T Consensus       380 hlP~LYl--gmey~~t~n~kLAe~Ff~~A~ai~P-~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p  456 (611)
T KOG1173|consen  380 HLPSLYL--GMEYMRTNNLKLAEKFFKQALAIAP-SDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEP  456 (611)
T ss_pred             cchHHHH--HHHHHHhccHHHHHHHHHHHHhcCC-CcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhH
Confidence            2233333  3357889999999999998775432 2667788887777888999999999998663211111  111235


Q ss_pred             HHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 006615          482 LYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC  561 (638)
Q Consensus       482 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~  561 (638)
                      +++.|...|.+.++.++|+..|+...... +-|..++.++--.|...|+++.|.+.|.+...  +.||..+-..++..+.
T Consensus       457 ~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ai  533 (611)
T KOG1173|consen  457 TLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAI  533 (611)
T ss_pred             HHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHH
Confidence            78999999999999999999999988753 34788999999999999999999999998875  6899888888887766


Q ss_pred             HH
Q 006615          562 KY  563 (638)
Q Consensus       562 ~~  563 (638)
                      ..
T Consensus       534 e~  535 (611)
T KOG1173|consen  534 ED  535 (611)
T ss_pred             Hh
Confidence            65

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.03  E-value=3.4e-07  Score=92.48  Aligned_cols=247  Identities=18%  Similarity=0.145  Sum_probs=174.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHhcccC-----CC-ccCHh-HHHHHHHHHHccCCHHHHHHHHHHHHhC-----C-C
Q 006615          207 SRTYTVMIEHLVNLGKLDSALEVFSALPLM-----RI-KRTSK-QYLILVEGFVGVERFDEAKSLLNEMRDD-----G-K  273 (638)
Q Consensus       207 ~~ty~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~p~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g-~  273 (638)
                      ..|...+...|...|+++.|..++....+.     |. .|.+. ..+.+-..|...+++++|..+|+++..-     | .
T Consensus       199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~  278 (508)
T KOG1840|consen  199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED  278 (508)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence            456666888999999999999999876542     21 23333 2345667888999999999999998542     2 2


Q ss_pred             CCCHHH-H-HHHHHHHHcCChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHH
Q 006615          274 FPGRAM-R-VALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALAN  351 (638)
Q Consensus       274 ~p~~~~-~-~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (638)
                      .|...+ + ++-..|.+.|++++|...+++..                                                
T Consensus       279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al------------------------------------------------  310 (508)
T KOG1840|consen  279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERAL------------------------------------------------  310 (508)
T ss_pred             CHHHHHHHHHHHHHHhccCChHHHHHHHHHHH------------------------------------------------
Confidence            233322 2 66678999999999999887652                                                


Q ss_pred             HhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHH-HHHHHHHHHHhcCChHHHHHHHH
Q 006615          352 TLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVY-ALEKMLTILARHGHVELVDRLIA  430 (638)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~l~~  430 (638)
                                                             +++.+...  ...|.+. .++.+...|+..+++++|..+++
T Consensus       311 ---------------------------------------~I~~~~~~--~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q  349 (508)
T KOG1840|consen  311 ---------------------------------------EIYEKLLG--ASHPEVAAQLSELAAILQSMNEYEEAKKLLQ  349 (508)
T ss_pred             ---------------------------------------HHHHHhhc--cChHHHHHHHHHHHHHHHHhcchhHHHHHHH
Confidence                                                   22222100  1122222 36677788899999999999988


Q ss_pred             HHHHc---CCCC----CHHHHHHHHHHHcccCCHHHHHHHHHhchhcc---CCCcchhHHHHHHHHHHHHHccCChHHHH
Q 006615          431 KLRSD---GMRL----PFSTIRLIIDFYGISKKADAALKAFHDDRTLC---GPISKFKLMLLYSSLLRTLTKCKRDFDAI  500 (638)
Q Consensus       431 ~m~~~---g~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~~li~~~~~~g~~~~A~  500 (638)
                      +..+.   -+.+    -..+++.|-..|.+.|++++|..+|+++.+..   .....+......+.|...|.+.+..++|.
T Consensus       350 ~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~  429 (508)
T KOG1840|consen  350 KALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAE  429 (508)
T ss_pred             HHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHH
Confidence            65421   1222    23678899999999999999999999876543   11122333467888999999999999999


Q ss_pred             HHHHHHHh----CCC-Ccc-hhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 006615          501 NVLEEMIF----SGI-VPD-VQTFSGLMYHFALQGDEKIVQKLFSMVR  542 (638)
Q Consensus       501 ~l~~~m~~----~g~-~p~-~~t~~~li~~~~~~g~~~~a~~l~~~m~  542 (638)
                      ++|.+...    .|. .|+ ..+|..|...|...|++++|.++.+.+.
T Consensus       430 ~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  430 QLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            99987543    332 233 4679999999999999999999998766

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.01  E-value=2.6e-07  Score=93.28  Aligned_cols=175  Identities=14%  Similarity=0.143  Sum_probs=131.8

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHH---c--CCC-CCH-HHHHHHHHHHcccCCHHHHHHHHHhchhccC---CCc
Q 006615          406 VYALEKMLTILARHGHVELVDRLIAKLRS---D--GMR-LPF-STIRLIIDFYGISKKADAALKAFHDDRTLCG---PIS  475 (638)
Q Consensus       406 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~---~--g~~-~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~  475 (638)
                      ..+++.|-.+|++.|++++|...++...+   +  |.. |.. ..++.+...|+..+++++|..+++...+...   ...
T Consensus       283 a~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~  362 (508)
T KOG1840|consen  283 AATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGED  362 (508)
T ss_pred             HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcccc
Confidence            34688888899999999998888876542   2  222 222 3456677788999999999999987655432   223


Q ss_pred             chhHHHHHHHHHHHHHccCChHHHHHHHHHHHhC-----C-CCc-chhhHHHHHHHHHccCCHHHHHHHHHHHHhC--CC
Q 006615          476 KFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFS-----G-IVP-DVQTFSGLMYHFALQGDEKIVQKLFSMVRQN--GV  546 (638)
Q Consensus       476 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g-~~p-~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~--~~  546 (638)
                      .+....+++.|...|.+.|++++|.++|++.+..     | ..+ ....++.|-..|.+.+++.+|.++|.+...-  -+
T Consensus       363 ~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~  442 (508)
T KOG1840|consen  363 NVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLC  442 (508)
T ss_pred             chHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHh
Confidence            3455789999999999999999999999987652     1 122 2456788889999999999999999875532  12


Q ss_pred             CCCHhhHHHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 006615          547 EPDAYMFKVLIQAYCKYLSNSNLMPD-AATKELLKKSLWKEGRRKEAAAVEERCE  600 (638)
Q Consensus       547 ~p~~~~~~~li~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~  600 (638)
                      .|+                    .|+ ..+|..|...|.+.|++|.|+++.+...
T Consensus       443 g~~--------------------~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  443 GPD--------------------HPDVTYTYLNLAALYRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             CCC--------------------CCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            233                    344 5678999999999999999999998877

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.99  E-value=5.7e-05  Score=75.91  Aligned_cols=393  Identities=12%  Similarity=0.074  Sum_probs=242.1

Q ss_pred             HHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHH
Q 006615           75 ALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLE  154 (638)
Q Consensus        75 ~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~  154 (638)
                      .|...|+-++|....+...+..  .-+.+.|+.+.-......++++|.+.|....+-+ +.|...+.-|--.-++.|+++
T Consensus        50 ~L~~lg~~~ea~~~vr~glr~d--~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~  126 (700)
T KOG1156|consen   50 TLNCLGKKEEAYELVRLGLRND--LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYE  126 (700)
T ss_pred             hhhcccchHHHHHHHHHHhccC--cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhh
Confidence            4667789999999998877653  2344467777666677789999999999888743 345566666666667888999


Q ss_pred             HHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHH------HHHHHcCCHHHHH
Q 006615          155 LVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG-AIPNSRTYTVMI------EHLVNLGKLDSAL  227 (638)
Q Consensus       155 ~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~ty~~li------~~~~~~g~~~~A~  227 (638)
                      .......++.+.. +.....|..+.-++.-.|+...|..++++..+.. -.|+...|.-..      ....+.|..++|.
T Consensus       127 ~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~al  205 (700)
T KOG1156|consen  127 GYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKAL  205 (700)
T ss_pred             hHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHH
Confidence            8888888877753 3346678899999999999999999999998864 246666665433      2356788888888


Q ss_pred             HHHHhcccCCCccCHhHH-HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHH--HHHHHHH-HcCChHHHHHHHHHhC
Q 006615          228 EVFSALPLMRIKRTSKQY-LILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMR--VALERMQ-EMGFIQGANEFLREML  303 (638)
Q Consensus       228 ~~~~~m~~~g~~p~~~~~-~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~--~ll~~~~-~~g~~~~a~~~~~~~~  303 (638)
                      +.+......  ..|-..+ .+-...+.+.+++++|..+|..+....  ||..-|  .+..++. -.+..+....++....
T Consensus       206 e~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls  281 (700)
T KOG1156|consen  206 EHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILS  281 (700)
T ss_pred             HHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence            877665432  1233333 445577888999999999999998754  666543  3445554 3333333335665553


Q ss_pred             cCccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhcc
Q 006615          304 PDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHF  383 (638)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (638)
                      ..-........                                         +                   .-..+.. 
T Consensus       282 ~~y~r~e~p~R-----------------------------------------l-------------------plsvl~~-  300 (700)
T KOG1156|consen  282 EKYPRHECPRR-----------------------------------------L-------------------PLSVLNG-  300 (700)
T ss_pred             hcCcccccchh-----------------------------------------c-------------------cHHHhCc-
Confidence            22111111000                                         0                   0000001 


Q ss_pred             CChhHH-HHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHH----HHHHHHHcC----------CCCCHH--HHHH
Q 006615          384 KSPETA-WHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDR----LIAKLRSDG----------MRLPFS--TIRL  446 (638)
Q Consensus       384 ~~~~~a-~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~----l~~~m~~~g----------~~~~~~--~~~~  446 (638)
                      ..+.+. -+++... .+.|+++   ++..+...|-.-...+-..+    +...+...|          -.|+..  ++-.
T Consensus       301 eel~~~vdkyL~~~-l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~  376 (700)
T KOG1156|consen  301 EELKEIVDKYLRPL-LSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYF  376 (700)
T ss_pred             chhHHHHHHHHHHH-hhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHH
Confidence            111111 1222222 2333332   22222222222111111111    111111111          134443  3445


Q ss_pred             HHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHH
Q 006615          447 IIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFA  526 (638)
Q Consensus       447 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~  526 (638)
                      +++.|-+.|+++.|..+++.....     .|..+..|-.=...+...|.+++|...+++..+.. .||...=.--.....
T Consensus       377 laqh~D~~g~~~~A~~yId~AIdH-----TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmL  450 (700)
T KOG1156|consen  377 LAQHYDKLGDYEVALEYIDLAIDH-----TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYML  450 (700)
T ss_pred             HHHHHHHcccHHHHHHHHHHHhcc-----CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHH
Confidence            667788889999999998887654     45545566666677888899999999999888754 345544445566667


Q ss_pred             ccCCHHHHHHHHHHHHhCCC
Q 006615          527 LQGDEKIVQKLFSMVRQNGV  546 (638)
Q Consensus       527 ~~g~~~~a~~l~~~m~~~~~  546 (638)
                      +..+.++|.++.....+.|.
T Consensus       451 rAn~i~eA~~~~skFTr~~~  470 (700)
T KOG1156|consen  451 RANEIEEAEEVLSKFTREGF  470 (700)
T ss_pred             HccccHHHHHHHHHhhhccc
Confidence            78888999998888888775

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.97  E-value=3.5e-06  Score=81.41  Aligned_cols=79  Identities=6%  Similarity=-0.085  Sum_probs=54.6

Q ss_pred             HHHHcCCChhHHHHHHHHHHcCCCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCc-hHhHHHHHHHHHhcC
Q 006615           74 HALRSAPNADSALSIMEALKSNPNFSHN-QSTLHALATVLAKSQRNHELKTLIGDISSSKFLNV-SVNFMNLMQWYSTSG  151 (638)
Q Consensus        74 ~~l~~~~~~~~Al~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~-~~~~~~ll~~~~~~g  151 (638)
                      +-+-+.|++++|++.|.+....   .|+ +.-|.....+|...|+|+...+--....+.  .|+ +-.+..-..++-..|
T Consensus       123 N~~f~~kkY~eAIkyY~~AI~l---~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~lg  197 (606)
T KOG0547|consen  123 NKFFRNKKYDEAIKYYTQAIEL---CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQLG  197 (606)
T ss_pred             hhhhhcccHHHHHHHHHHHHhc---CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhhc
Confidence            4455778999999999999954   466 556788888888999999887766655553  233 223444445566667


Q ss_pred             CHHHHH
Q 006615          152 DLELVL  157 (638)
Q Consensus       152 ~~~~A~  157 (638)
                      ++++|+
T Consensus       198 ~~~eal  203 (606)
T KOG0547|consen  198 KFDEAL  203 (606)
T ss_pred             cHHHHH
Confidence            766664

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.95  E-value=1.7e-05  Score=73.51  Aligned_cols=441  Identities=12%  Similarity=0.050  Sum_probs=243.3

Q ss_pred             HHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHH-HHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcC
Q 006615           73 THALRSAPNADSALSIMEALKSNPNFSHNQSTLHALA-TVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSG  151 (638)
Q Consensus        73 ~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li-~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g  151 (638)
                      +.-+....++..|+.+++.-...+. . .....+..| ..+.+.|++++|...+.-+.... .++...+-.|...+.-.|
T Consensus        29 Ledfls~rDytGAislLefk~~~~~-E-EE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg  105 (557)
T KOG3785|consen   29 LEDFLSNRDYTGAISLLEFKLNLDR-E-EEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLG  105 (557)
T ss_pred             HHHHHhcccchhHHHHHHHhhccch-h-hhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHH
Confidence            4556667888899998887663321 1 112344444 44467899999999998877643 355555666777777788


Q ss_pred             CHHHHHHHHHHHHhcCCCCCHHhHHHH-HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 006615          152 DLELVLSTWNEYRQRAKLLSTESYNIV-MSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF  230 (638)
Q Consensus       152 ~~~~A~~l~~~m~~~~~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~  230 (638)
                      .+.+|..+-....      +....+-| ...--+-++-++-..+-+.+...     ..---+|.+..-..-.+.+|.+++
T Consensus       106 ~Y~eA~~~~~ka~------k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvY  174 (557)
T KOG3785|consen  106 QYIEAKSIAEKAP------KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVY  174 (557)
T ss_pred             HHHHHHHHHhhCC------CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHH
Confidence            8888887765442      23344444 44455667766666665555441     111223333344445688999999


Q ss_pred             HhcccCCCccCHhHHHHHH-HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH--H--cCChHHHHHHHHHhCcC
Q 006615          231 SALPLMRIKRTSKQYLILV-EGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQ--E--MGFIQGANEFLREMLPD  305 (638)
Q Consensus       231 ~~m~~~g~~p~~~~~~~li-~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~--~--~g~~~~a~~~~~~~~~~  305 (638)
                      ......  .|+-...|.-+ -+|.+..-++-+.++++-..+.  .||...-.-+.+|.  +  .|+.  |.+-.+++...
T Consensus       175 krvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~--ae~E~k~ladN  248 (557)
T KOG3785|consen  175 KRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRT--AEDEKKELADN  248 (557)
T ss_pred             HHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccch--hHHHHHHHHhc
Confidence            887754  35555555544 4566777788888887766554  34444322222221  1  1222  11111221110


Q ss_pred             ccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCC
Q 006615          306 KRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKS  385 (638)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (638)
                      ..                                               .-.|            ...-+...-+..++.
T Consensus       249 ~~-----------------------------------------------~~~~------------f~~~l~rHNLVvFrn  269 (557)
T KOG3785|consen  249 ID-----------------------------------------------QEYP------------FIEYLCRHNLVVFRN  269 (557)
T ss_pred             cc-----------------------------------------------ccch------------hHHHHHHcCeEEEeC
Confidence            00                                               0000            000001111222455


Q ss_pred             hhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-----HcccCCHHHH
Q 006615          386 PETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDF-----YGISKKADAA  460 (638)
Q Consensus       386 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~-----~~~~g~~~~A  460 (638)
                      -+.|++++-..+   ...|  ..--.++-.|.+.+++.+|..+.+++.-  ..|-......++.+     ......+.-|
T Consensus       270 gEgALqVLP~L~---~~IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiA  342 (557)
T KOG3785|consen  270 GEGALQVLPSLM---KHIP--EARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIA  342 (557)
T ss_pred             CccHHHhchHHH---hhCh--HhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHH
Confidence            556666554332   1122  2223455567788888888887776541  22333333333322     1222335566


Q ss_pred             HHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHH
Q 006615          461 LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSM  540 (638)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~  540 (638)
                      .+.|+...+.   ....|....-.++...+.-..++++.+..++.....=..-|.+.|| +.++++..|++.+|.++|-.
T Consensus       343 qqffqlVG~S---a~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~  418 (557)
T KOG3785|consen  343 QQFFQLVGES---ALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIR  418 (557)
T ss_pred             HHHHHHhccc---ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhh
Confidence            6666654432   1122222223445555555566777777777776654444555554 56778888888888888876


Q ss_pred             HHhCCCCCCHhhHHHHHHH-HHHH---------hhhCCCCCCHHHH-HHHHHHHhccCcHHHHHHHHHHHHHccC
Q 006615          541 VRQNGVEPDAYMFKVLIQA-YCKY---------LSNSNLMPDAATK-ELLKKSLWKEGRRKEAAAVEERCEKIND  604 (638)
Q Consensus       541 m~~~~~~p~~~~~~~li~~-~~~~---------m~~~g~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~~~  604 (638)
                      +....++ |..+|.+++.- |.+.         |.+.+-..+..+. ..+.+-|.+.+.+--|-+.|+.++..++
T Consensus       419 is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP  492 (557)
T KOG3785|consen  419 ISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP  492 (557)
T ss_pred             hcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC
Confidence            6654443 55666666543 3333         4444433344443 5556778899999999999999887665

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.94  E-value=1.6e-07  Score=85.62  Aligned_cols=151  Identities=10%  Similarity=0.038  Sum_probs=93.1

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHH
Q 006615          141 MNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYT-VMIEHLVN  219 (638)
Q Consensus       141 ~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~-~li~~~~~  219 (638)
                      +.+.+.|.+.|.+.+|.+.|+.-...-  |-+.||-.|-++|.+-.+++.|+.+|.+-.+.  .|-.+||- -+.+.+-.
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ea  302 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEA  302 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHH
Confidence            456677777777777777777665542  45666777777777777777777777766653  45444443 35556666


Q ss_pred             cCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHH
Q 006615          220 LGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGAN  296 (638)
Q Consensus       220 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~  296 (638)
                      .++.++|.++|....+.. .-++....++..+|.-.++++-|++.|+++.+.|+.....+.++-.+|.-.++++-++
T Consensus       303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L  378 (478)
T KOG1129|consen  303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVL  378 (478)
T ss_pred             HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhH
Confidence            677777777777665532 2345555556666666777777777777777776654443334444444444444333

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.93  E-value=3.2e-05  Score=76.81  Aligned_cols=446  Identities=11%  Similarity=0.067  Sum_probs=248.6

Q ss_pred             HHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHH--h
Q 006615           72 VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYS--T  149 (638)
Q Consensus        72 ~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~--~  149 (638)
                      =++.....+++++|+.....+....  +-+...+..=+-++...+++++|..+.+.-...  ..+.. | .+=.+||  +
T Consensus        18 ~ln~~~~~~e~e~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~-~-~fEKAYc~Yr   91 (652)
T KOG2376|consen   18 DLNRHGKNGEYEEAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINS-F-FFEKAYCEYR   91 (652)
T ss_pred             HHHHhccchHHHHHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcch-h-hHHHHHHHHH
Confidence            4677788899999999999998653  344556777777778889999998665432210  11111 1 0345555  6


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HcCCHHHHHH
Q 006615          150 SGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLV-NLGKLDSALE  228 (638)
Q Consensus       150 ~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~-~~g~~~~A~~  228 (638)
                      .+..++|+..++.....    |..+...-...+.+.|++++|+.+|+.+.+.+..    .+..-+.+-+ ..+..-.+. 
T Consensus        92 lnk~Dealk~~~~~~~~----~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d----d~d~~~r~nl~a~~a~l~~~-  162 (652)
T KOG2376|consen   92 LNKLDEALKTLKGLDRL----DDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD----DQDEERRANLLAVAAALQVQ-  162 (652)
T ss_pred             cccHHHHHHHHhccccc----chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc----hHHHHHHHHHHHHHHhhhHH-
Confidence            78999999999833222    2335555567788999999999999999886543    2322222211 111111221 


Q ss_pred             HHHhcccCCCccCHhHHHHH---HHHHHccCCHHHHHHHHHHHHhC--------CCC-----CCHHHH--HHHHHHHHcC
Q 006615          229 VFSALPLMRIKRTSKQYLIL---VEGFVGVERFDEAKSLLNEMRDD--------GKF-----PGRAMR--VALERMQEMG  290 (638)
Q Consensus       229 ~~~~m~~~g~~p~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~--------g~~-----p~~~~~--~ll~~~~~~g  290 (638)
                      +.+...   ..| ..+|..+   ...+...|++.+|+++++...+-        ...     ....+.  .+...+...|
T Consensus       163 ~~q~v~---~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~G  238 (652)
T KOG2376|consen  163 LLQSVP---EVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQG  238 (652)
T ss_pred             HHHhcc---CCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhc
Confidence            233333   233 2334333   34556789999999999887221        111     111122  3445677899


Q ss_pred             ChHHHHHHHHHhCcCccccccc--cccCCCCCccccccCCCCCccccccccccCCCChhh------HHHHhhcCCHHHHH
Q 006615          291 FIQGANEFLREMLPDKRIKNVR--YYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKA------LANTLDEWSPEVVS  362 (638)
Q Consensus       291 ~~~~a~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~  362 (638)
                      +.++|..++..+..........  +...+.                -.......+.+...      ....+....-...+
T Consensus       239 qt~ea~~iy~~~i~~~~~D~~~~Av~~NNL----------------va~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls  302 (652)
T KOG2376|consen  239 QTAEASSIYVDIIKRNPADEPSLAVAVNNL----------------VALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLS  302 (652)
T ss_pred             chHHHHHHHHHHHHhcCCCchHHHHHhcch----------------hhhccccccCchHHHHHHHHHHHHhHHHHHHHHH
Confidence            9999999998886554332211  111000                00011112222100      00000000000000


Q ss_pred             HhhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHh--cCChHHHHHHHHHHHHcCCCCC
Q 006615          363 LLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILAR--HGHVELVDRLIAKLRSDGMRLP  440 (638)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~--~g~~~~a~~l~~~m~~~g~~~~  440 (638)
                      .-....+..+..+   +.-..+..+.+.++-.   ...+..|... +.+++..+.+  .....++.+++...-+....-.
T Consensus       303 ~~qk~~i~~N~~l---L~l~tnk~~q~r~~~a---~lp~~~p~~~-~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s  375 (652)
T KOG2376|consen  303 KKQKQAIYRNNAL---LALFTNKMDQVRELSA---SLPGMSPESL-FPILLQEATKVREKKHKKAIELLLQFADGHPEKS  375 (652)
T ss_pred             HHHHHHHHHHHHH---HHHHhhhHHHHHHHHH---hCCccCchHH-HHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchh
Confidence            0000000011111   1111233444444433   3334445443 4444444433  2346677777777665543323


Q ss_pred             HHHHHHHHHHHcccCCHHHHHHHHHhchhcc-----CCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhC--CCCc
Q 006615          441 FSTIRLIIDFYGISKKADAALKAFHDDRTLC-----GPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFS--GIVP  513 (638)
Q Consensus       441 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p  513 (638)
                      ..+.-.+++.....|+++.|.+++.......     ...-.|   .+...+...+.+.++.+.|.+++++....  .-.+
T Consensus       376 ~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P---~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t  452 (652)
T KOG2376|consen  376 KVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP---GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQT  452 (652)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh---hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcc
Confidence            4555666778889999999999998322110     011122   45677788888888888898888887652  1123


Q ss_pred             chhhHHHHHH----HHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHH
Q 006615          514 DVQTFSGLMY----HFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY  563 (638)
Q Consensus       514 ~~~t~~~li~----~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~  563 (638)
                      .....++++.    --.+.|+-++|..+++++.+.. .+|..+...++.+|++.
T Consensus       453 ~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~  505 (652)
T KOG2376|consen  453 GSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL  505 (652)
T ss_pred             cchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc
Confidence            3344444443    2346799999999999999864 67899999999999987

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.93  E-value=2.6e-06  Score=87.27  Aligned_cols=130  Identities=15%  Similarity=0.067  Sum_probs=92.0

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHH
Q 006615          408 ALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLL  487 (638)
Q Consensus       408 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li  487 (638)
                      ++.-+...|...|++++|++++++.+++... .+..|..-...|-+.|++.+|...++..+..     ++.+...-+-..
T Consensus       196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~~~~Aa~~~~~Ar~L-----D~~DRyiNsK~a  269 (517)
T PF12569_consen  196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGDLKEAAEAMDEAREL-----DLADRYINSKCA  269 (517)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC-----ChhhHHHHHHHH
Confidence            3355566777888888888888888876533 3567777778888888888888888887764     233335556667


Q ss_pred             HHHHccCChHHHHHHHHHHHhCCCCcchh------hH--HHHHHHHHccCCHHHHHHHHHHHHh
Q 006615          488 RTLTKCKRDFDAINVLEEMIFSGIVPDVQ------TF--SGLMYHFALQGDEKIVQKLFSMVRQ  543 (638)
Q Consensus       488 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~------t~--~~li~~~~~~g~~~~a~~l~~~m~~  543 (638)
                      ..+.++|+.++|.+++....+.+..|-..      .|  .-...+|.+.|++..|++.|..+.+
T Consensus       270 Ky~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k  333 (517)
T PF12569_consen  270 KYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK  333 (517)
T ss_pred             HHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            77888899999988888887766543221      11  3345688888888888877765554

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.87  E-value=3.4e-06  Score=86.46  Aligned_cols=139  Identities=16%  Similarity=0.103  Sum_probs=105.9

Q ss_pred             HHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHH
Q 006615          443 TIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLM  522 (638)
Q Consensus       443 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li  522 (638)
                      ++..+-+.|-..|++++|+.+.+...+.     .|..+..|..-...|-+.|++.+|.+.++........ |...=+-..
T Consensus       196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~h-----tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~a  269 (517)
T PF12569_consen  196 TLYFLAQHYDYLGDYEKALEYIDKAIEH-----TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCA  269 (517)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhc-----CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHH
Confidence            4456677788999999999999998876     4555678999999999999999999999999986532 666666777


Q ss_pred             HHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHc
Q 006615          523 YHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKI  602 (638)
Q Consensus       523 ~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~  602 (638)
                      ..+.+.|++++|.+++....+.+..|-...+    ++=|           ..-..-...+|.+.|++..|.+-|..+.+.
T Consensus       270 Ky~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~----~mQc-----------~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~  334 (517)
T PF12569_consen  270 KYLLRAGRIEEAEKTASLFTREDVDPLSNLN----DMQC-----------MWFETECAEAYLRQGDYGLALKRFHAVLKH  334 (517)
T ss_pred             HHHHHCCCHHHHHHHHHhhcCCCCCcccCHH----HHHH-----------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            8999999999999999999887753332111    1111           011144567888999999998888777664

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF12854 PPR_1: PPR repeat

Probab=98.87  E-value=3.7e-09  Score=63.78  Aligned_cols=32  Identities=31%  Similarity=0.686  Sum_probs=15.7

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhc
Q 006615          202 GAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL  233 (638)
Q Consensus       202 g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m  233 (638)
                      |+.||..||++||++||+.|++++|.++|++|
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            44444444444444444444444444444444

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.85  E-value=2.9e-07  Score=84.05  Aligned_cols=224  Identities=14%  Similarity=0.103  Sum_probs=184.8

Q ss_pred             HHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHH-HHHHHHHhc
Q 006615           72 VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFM-NLMQWYSTS  150 (638)
Q Consensus        72 ~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~-~ll~~~~~~  150 (638)
                      +...|.+.|.+.+|-..|+...++.   |-+.+|-.+-+.|.+...+..|..++.+-...  -|-.+||. -..+.+-..
T Consensus       229 ~gkCylrLgm~r~AekqlqssL~q~---~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam  303 (478)
T KOG1129|consen  229 MGKCYLRLGMPRRAEKQLQSSLTQF---PHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAM  303 (478)
T ss_pred             HHHHHHHhcChhhhHHHHHHHhhcC---CchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHH
Confidence            5678889999999999999887652   33448999999999999999999999988764  24444443 466888888


Q ss_pred             CCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 006615          151 GDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF  230 (638)
Q Consensus       151 g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~  230 (638)
                      ++.++|.+++++..+.. +.++.+...+...|.-.++++-|+..|+++.+.|+. +...|+.+--+|.-.+++|-+...|
T Consensus       304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf  381 (478)
T KOG1129|consen  304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF  381 (478)
T ss_pred             HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence            99999999999988764 567788888888888899999999999999999987 8889999988899999999999999


Q ss_pred             HhcccCCCccC--HhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHh
Q 006615          231 SALPLMRIKRT--SKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREM  302 (638)
Q Consensus       231 ~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~  302 (638)
                      ++....--.|+  ..+|-.+-......|++.-|.+.|+-....+..-.....++...-.+.|++++|..++...
T Consensus       382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A  455 (478)
T KOG1129|consen  382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAA  455 (478)
T ss_pred             HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence            88765433343  3568888888899999999999999888776555555666666678999999999999865

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.84  E-value=2.9e-06  Score=83.48  Aligned_cols=278  Identities=12%  Similarity=0.010  Sum_probs=165.0

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 006615          141 MNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL  220 (638)
Q Consensus       141 ~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~  220 (638)
                      ..-.+-+...+++.+..++++...+.. +++...+..-|.++.+.|+..+-..+=.+|++. .+-.+.+|-++.-.|.-.
T Consensus       248 ~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i  325 (611)
T KOG1173|consen  248 AEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMI  325 (611)
T ss_pred             HHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHh
Confidence            334444555566666666666666553 455555666666666666665555555555553 222455666666666666


Q ss_pred             CCHHHHHHHHHhcccCCCcc-CHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHH
Q 006615          221 GKLDSALEVFSALPLMRIKR-TSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFL  299 (638)
Q Consensus       221 g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~  299 (638)
                      |+.++|.+.|.+....  .| =...|-.....|+-.|.-|+|+..|...-+.=..--..+.-+-.-|.+.++.+.|.++|
T Consensus       326 ~k~seARry~SKat~l--D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff  403 (611)
T KOG1173|consen  326 GKYSEARRYFSKATTL--DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFF  403 (611)
T ss_pred             cCcHHHHHHHHHHhhc--CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHH
Confidence            6666666666654432  12 13456666666666666666666665543310000001111223344445555555555


Q ss_pred             HHhCcCccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHH
Q 006615          300 REMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKV  379 (638)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (638)
                      .+                                                                              
T Consensus       404 ~~------------------------------------------------------------------------------  405 (611)
T KOG1173|consen  404 KQ------------------------------------------------------------------------------  405 (611)
T ss_pred             HH------------------------------------------------------------------------------
Confidence            44                                                                              


Q ss_pred             HhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CC--CCCHHHHHHHHHHHcc
Q 006615          380 LRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSD----GM--RLPFSTIRLIIDFYGI  453 (638)
Q Consensus       380 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g~--~~~~~~~~~li~~~~~  453 (638)
                                      .....  +-|+...+-+--.....+.+.+|..+|+.....    +.  .--..+++.|..+|.+
T Consensus       406 ----------------A~ai~--P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rk  467 (611)
T KOG1173|consen  406 ----------------ALAIA--PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRK  467 (611)
T ss_pred             ----------------HHhcC--CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHH
Confidence                            32221  224445555554555667777777777765521    11  1134567888889999


Q ss_pred             cCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHH
Q 006615          454 SKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHF  525 (638)
Q Consensus       454 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~  525 (638)
                      .+++++|+..|+.....     .|..+.++.++.-.|...|+++.|.+.|.+..-  +.||..+-..++..+
T Consensus       468 l~~~~eAI~~~q~aL~l-----~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~a  532 (611)
T KOG1173|consen  468 LNKYEEAIDYYQKALLL-----SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLA  532 (611)
T ss_pred             HhhHHHHHHHHHHHHHc-----CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHH
Confidence            99999999999987764     333357888888889999999999999988875  578887777776643

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.83  E-value=0.00015  Score=73.11  Aligned_cols=424  Identities=13%  Similarity=0.084  Sum_probs=237.7

Q ss_pred             cCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHH
Q 006615           78 SAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVL  157 (638)
Q Consensus        78 ~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~  157 (638)
                      ..+++...+.+.+.+.+..+-.++  +....--.+...|+.++|....+.-.+.. ..+.+.|+.+.-.+-...++++|.
T Consensus        19 E~kQYkkgLK~~~~iL~k~~eHge--slAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eai   95 (700)
T KOG1156|consen   19 ETKQYKKGLKLIKQILKKFPEHGE--SLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAI   95 (700)
T ss_pred             HHHHHHhHHHHHHHHHHhCCccch--hHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHH
Confidence            456677777777777765433344  33333334566778888888777766543 344555777777677777888888


Q ss_pred             HHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhcccC
Q 006615          158 STWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIP-NSRTYTVMIEHLVNLGKLDSALEVFSALPLM  236 (638)
Q Consensus       158 ~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~  236 (638)
                      +.|......+ +.|...|.-+--.-++.|+++...+.-.+..+.  .| ....|.....++--.|+...|..+.++..+.
T Consensus        96 Kcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t  172 (700)
T KOG1156|consen   96 KCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKT  172 (700)
T ss_pred             HHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8888877654 445666766666666777777777776666663  23 3455666777777778888888888777664


Q ss_pred             C-CccCHhHHHHHH------HHHHccCCHHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHcCChHHHHHHHHHhCcCcc
Q 006615          237 R-IKRTSKQYLILV------EGFVGVERFDEAKSLLNEMRDDGKFPGRAMR--VALERMQEMGFIQGANEFLREMLPDKR  307 (638)
Q Consensus       237 g-~~p~~~~~~~li------~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~--~ll~~~~~~g~~~~a~~~~~~~~~~~~  307 (638)
                      . -.|+...|.-..      ....+.|.+++|.+-+.+-... + .|..-+  .-..-+.+.+++++|..++..+.....
T Consensus       173 ~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i-~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnP  250 (700)
T KOG1156|consen  173 QNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-I-VDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNP  250 (700)
T ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-H-HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCc
Confidence            3 235555543332      2334567777777766554321 1 122222  233456777888888888776642211


Q ss_pred             ccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChh
Q 006615          308 IKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPE  387 (638)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (638)
                                                                         +.+..         ...+-..+....+..
T Consensus       251 ---------------------------------------------------dn~~Y---------y~~l~~~lgk~~d~~  270 (700)
T KOG1156|consen  251 ---------------------------------------------------DNLDY---------YEGLEKALGKIKDML  270 (700)
T ss_pred             ---------------------------------------------------hhHHH---------HHHHHHHHHHHhhhH
Confidence                                                               00000         000111111111222


Q ss_pred             HHH-HHHHHHhcCC--CCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHH---
Q 006615          388 TAW-HFFCWVAYQP--GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAAL---  461 (638)
Q Consensus       388 ~a~-~~~~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~---  461 (638)
                      +++ .+|.......  ...|-....    .......-.+...+++..+.+.|+++-   +..+...|-.....+-..   
T Consensus       271 ~~lk~ly~~ls~~y~r~e~p~Rlpl----svl~~eel~~~vdkyL~~~l~Kg~p~v---f~dl~SLyk~p~k~~~le~Lv  343 (700)
T KOG1156|consen  271 EALKALYAILSEKYPRHECPRRLPL----SVLNGEELKEIVDKYLRPLLSKGVPSV---FKDLRSLYKDPEKVAFLEKLV  343 (700)
T ss_pred             HHHHHHHHHHhhcCcccccchhccH----HHhCcchhHHHHHHHHHHHhhcCCCch---hhhhHHHHhchhHhHHHHHHH
Confidence            222 2333221111  001111111    111112223445566777778887643   333444443322222111   


Q ss_pred             -HHHHhchhccCCC-------cchhHHHH--HHHHHHHHHccCChHHHHHHHHHHHhCCCCcchh-hHHHHHHHHHccCC
Q 006615          462 -KAFHDDRTLCGPI-------SKFKLMLL--YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQ-TFSGLMYHFALQGD  530 (638)
Q Consensus       462 -~~~~~~~~~~~~~-------~~~~~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~li~~~~~~g~  530 (638)
                       .+...+... +..       ..|.....  +--++..+-+.|+++.|....+..++.  .|+.+ -|..=.+.+...|+
T Consensus       344 t~y~~~L~~~-~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~  420 (700)
T KOG1156|consen  344 TSYQHSLSGT-GMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGL  420 (700)
T ss_pred             HHHHhhcccc-cCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCC
Confidence             122221111 000       11222244  455788899999999999999999986  67654 45555688999999


Q ss_pred             HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcc
Q 006615          531 EKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKIN  603 (638)
Q Consensus       531 ~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~  603 (638)
                      +++|...+++..+.+                        .||...-..-..-..++.+.++|.++......-|
T Consensus       421 l~eAa~~l~ea~elD------------------------~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~  469 (700)
T KOG1156|consen  421 LDEAAAWLDEAQELD------------------------TADRAINSKCAKYMLRANEIEEAEEVLSKFTREG  469 (700)
T ss_pred             hHHHHHHHHHHHhcc------------------------chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcc
Confidence            999999999999875                        3343333344445556677777777776665544

>PF12854 PPR_1: PPR repeat

Probab=98.82  E-value=5e-09  Score=63.18  Aligned_cols=34  Identities=29%  Similarity=0.402  Sum_probs=24.6

Q ss_pred             cCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHH
Q 006615          166 RAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI  199 (638)
Q Consensus       166 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~  199 (638)
                      +|+.||..|||+||++||+.|++++|.++|++|+
T Consensus         1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~   34 (34)
T PF12854_consen    1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK   34 (34)
T ss_pred             CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence            3667777777777777777777777777777763

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.79  E-value=0.0001  Score=75.85  Aligned_cols=207  Identities=18%  Similarity=0.166  Sum_probs=123.3

Q ss_pred             HHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHh-CC--------CCCchHhHHHHHHH
Q 006615           76 LRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS-SK--------FLNVSVNFMNLMQW  146 (638)
Q Consensus        76 l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~-~~--------~~~~~~~~~~ll~~  146 (638)
                      |..-|+.+.|.+-.+.++...       +|..+.+.|.+.++++-|.-.+..|.. +|        ..++ .+=....-.
T Consensus       738 yvtiG~MD~AfksI~~IkS~~-------vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvL  809 (1416)
T KOG3617|consen  738 YVTIGSMDAAFKSIQFIKSDS-------VWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVL  809 (1416)
T ss_pred             EEEeccHHHHHHHHHHHhhhH-------HHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHH
Confidence            456689999988888777543       899999999999999999888877753 11        1121 111222333


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 006615          147 YSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSA  226 (638)
Q Consensus       147 ~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A  226 (638)
                      -...|.+++|+.+|.+-+..+         .|=..|-..|.+++|+++-+.=-+  +. =..||..-...+-..++.+.|
T Consensus       810 AieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DR--iH-Lr~Tyy~yA~~Lear~Di~~A  877 (1416)
T KOG3617|consen  810 AIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDR--IH-LRNTYYNYAKYLEARRDIEAA  877 (1416)
T ss_pred             HHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccc--ee-hhhhHHHHHHHHHhhccHHHH
Confidence            456788888888888776543         222334556777777776554222  11 123444444444555666666


Q ss_pred             HHHHHhcccCC-------------------CccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhC----------CC----
Q 006615          227 LEVFSALPLMR-------------------IKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDD----------GK----  273 (638)
Q Consensus       227 ~~~~~~m~~~g-------------------~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----------g~----  273 (638)
                      .+.|++.....                   -..|...|.-....+-..|+.+.|+.+|...++.          |-    
T Consensus       878 leyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kA  957 (1416)
T KOG3617|consen  878 LEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKA  957 (1416)
T ss_pred             HHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHH
Confidence            66655422110                   0124444555555555567777777776655431          00    


Q ss_pred             ------CCC-HHHHHHHHHHHHcCChHHHHHHHHHh
Q 006615          274 ------FPG-RAMRVALERMQEMGFIQGANEFLREM  302 (638)
Q Consensus       274 ------~p~-~~~~~ll~~~~~~g~~~~a~~~~~~~  302 (638)
                            .-| .+.|.+.+.|...|++.+|..+|.+.
T Consensus       958 a~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrA  993 (1416)
T KOG3617|consen  958 ARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRA  993 (1416)
T ss_pred             HHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence                  011 23466777788888888888887665

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.77  E-value=2.8e-06  Score=82.31  Aligned_cols=220  Identities=8%  Similarity=0.069  Sum_probs=153.3

Q ss_pred             HHcCCChhHHHHHHHHHHcCCCCCCCh--hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCH
Q 006615           76 LRSAPNADSALSIMEALKSNPNFSHNQ--STLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDL  153 (638)
Q Consensus        76 l~~~~~~~~Al~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~  153 (638)
                      +...+..+.++.-+..+.......|+.  ..|......+...|+.++|...|++..+.. +.+...|+.+...+...|++
T Consensus        36 ~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~  114 (296)
T PRK11189         36 LQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNF  114 (296)
T ss_pred             cCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCH
Confidence            444467788888888888654444432  356677777889999999999999988754 45677899999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhc
Q 006615          154 ELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL  233 (638)
Q Consensus       154 ~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m  233 (638)
                      ++|...|++..+.+ +-+..+|..+..++...|++++|.+.|+...+.  .|+..........+...++.++|.+.|++.
T Consensus       115 ~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~  191 (296)
T PRK11189        115 DAAYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQR  191 (296)
T ss_pred             HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence            99999999998865 335678888888899999999999999999884  454432222233344567899999999765


Q ss_pred             ccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhC---CC--CC--CHHHHHHHHHHHHcCChHHHHHHHHHhCc
Q 006615          234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDD---GK--FP--GRAMRVALERMQEMGFIQGANEFLREMLP  304 (638)
Q Consensus       234 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~--~p--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  304 (638)
                      ... ..|+...| .+..  ...|+..++ +.+..+.+.   .+  .|  ...++.+...+.+.|++++|...|+....
T Consensus       192 ~~~-~~~~~~~~-~~~~--~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~  264 (296)
T PRK11189        192 YEK-LDKEQWGW-NIVE--FYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALA  264 (296)
T ss_pred             Hhh-CCccccHH-HHHH--HHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            432 13333222 2222  334555443 344444321   11  11  12345778889999999999999998753

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.76  E-value=3.3e-06  Score=81.74  Aligned_cols=211  Identities=15%  Similarity=-0.014  Sum_probs=147.9

Q ss_pred             CChhHHHHHHHHHhcCCCCcCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHH
Q 006615          384 KSPETAWHFFCWVAYQPGYTHDV--YALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAAL  461 (638)
Q Consensus       384 ~~~~~a~~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~  461 (638)
                      ...+.++..+.++.......|+.  ..|..+-..+...|+.++|...|++..+.... +...|+.+...|...|++++|.
T Consensus        40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~  118 (296)
T PRK11189         40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAY  118 (296)
T ss_pred             hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHH
Confidence            45566677777666544444443  45777777888999999999999998887643 6788999999999999999999


Q ss_pred             HHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHH
Q 006615          462 KAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMV  541 (638)
Q Consensus       462 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m  541 (638)
                      ..|+...+.     .|+...+|..+...+...|++++|.+.|++..+.  .|+..........+...++.++|.+.|++.
T Consensus       119 ~~~~~Al~l-----~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~  191 (296)
T PRK11189        119 EAFDSVLEL-----DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQR  191 (296)
T ss_pred             HHHHHHHHh-----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence            999998765     4554578888888899999999999999998875  455432222222344567899999999765


Q ss_pred             HhCCCCCCHhhHHHHHHHHHHH---------hh-hCC----CCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHccC
Q 006615          542 RQNGVEPDAYMFKVLIQAYCKY---------LS-NSN----LMP-DAATKELLKKSLWKEGRRKEAAAVEERCEKIND  604 (638)
Q Consensus       542 ~~~~~~p~~~~~~~li~~~~~~---------m~-~~g----~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~  604 (638)
                      .... .|+... ..+...+...         +. ...    +.| ....|..+...+.+.|++++|...|++..+.++
T Consensus       192 ~~~~-~~~~~~-~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~  267 (296)
T PRK11189        192 YEKL-DKEQWG-WNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV  267 (296)
T ss_pred             HhhC-CccccH-HHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence            5432 333221 1222221111         11 111    112 235788899999999999999999999998764

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.72  E-value=0.00056  Score=70.47  Aligned_cols=175  Identities=16%  Similarity=0.166  Sum_probs=118.7

Q ss_pred             HhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 006615          129 SSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSR  208 (638)
Q Consensus       129 ~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~  208 (638)
                      ....+..|...|..|.-+...+|+++.+.+.|++....- --....|+.+-..|...|.-..|..+++.-....-.|+..
T Consensus       315 r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~  393 (799)
T KOG4162|consen  315 RLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDI  393 (799)
T ss_pred             HHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcc
Confidence            334455678889999999999999999999999876542 2346789999999999999999999998877654335444


Q ss_pred             HHHHHH-HHHH-HcCCHHHHHHHHHhcccC--CC--ccCHhHHHHHHHHHHcc-----------CCHHHHHHHHHHHHhC
Q 006615          209 TYTVMI-EHLV-NLGKLDSALEVFSALPLM--RI--KRTSKQYLILVEGFVGV-----------ERFDEAKSLLNEMRDD  271 (638)
Q Consensus       209 ty~~li-~~~~-~~g~~~~A~~~~~~m~~~--g~--~p~~~~~~~li~~~~~~-----------g~~~~A~~l~~~m~~~  271 (638)
                      +--.++ +.|. +.|.++++..+-.+....  |.  ......|-.+.-+|...           ....++++.+++..+.
T Consensus       394 s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~  473 (799)
T KOG4162|consen  394 SVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQF  473 (799)
T ss_pred             hHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhc
Confidence            433333 3343 346666666655554431  10  12345566555555432           2245677888888777


Q ss_pred             CCCCCHHHHHHHHHHHHcCChHHHHHHHHHhCc
Q 006615          272 GKFPGRAMRVALERMQEMGFIQGANEFLREMLP  304 (638)
Q Consensus       272 g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  304 (638)
                      +.....+.+.+-.-|+..++++.|.+..++...
T Consensus       474 d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~  506 (799)
T KOG4162|consen  474 DPTDPLVIFYLALQYAEQRQLTSALDYAREALA  506 (799)
T ss_pred             CCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            665555666666678888999999998887643

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.71  E-value=0.00026  Score=65.98  Aligned_cols=399  Identities=13%  Similarity=0.056  Sum_probs=227.4

Q ss_pred             HHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcC
Q 006615           72 VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSG  151 (638)
Q Consensus        72 ~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g  151 (638)
                      +...+-+.|++++|+..|..+....  .++...+-.+.-...-.|.+.+|..+-....+     ++-.-..|...--+.+
T Consensus        63 ia~C~fhLgdY~~Al~~Y~~~~~~~--~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-----~pL~~RLlfhlahkln  135 (557)
T KOG3785|consen   63 IAHCYFHLGDYEEALNVYTFLMNKD--DAPAELGVNLACCKFYLGQYIEAKSIAEKAPK-----TPLCIRLLFHLAHKLN  135 (557)
T ss_pred             HHHHHHhhccHHHHHHHHHHHhccC--CCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHhC
Confidence            4456678899999999999988754  34444555555555567888888877654332     2322334445556667


Q ss_pred             CHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHHcCCHHHHHHHH
Q 006615          152 DLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMI-EHLVNLGKLDSALEVF  230 (638)
Q Consensus       152 ~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li-~~~~~~g~~~~A~~~~  230 (638)
                      +-++-..+-+.+...     ..---+|.+..-..-.+.+|+++|.+....+  |+-...|.-+ -+|.+..-++-+.+++
T Consensus       136 dEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl  208 (557)
T KOG3785|consen  136 DEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVL  208 (557)
T ss_pred             cHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHH
Confidence            776666666655432     1222334444333445778888888887642  4444455433 3456666677777766


Q ss_pred             HhcccCCCccCH-hHHHHHHHHHHc--cCCHHHHH--H----------HHHHHHhCC------------CCCCH------
Q 006615          231 SALPLMRIKRTS-KQYLILVEGFVG--VERFDEAK--S----------LLNEMRDDG------------KFPGR------  277 (638)
Q Consensus       231 ~~m~~~g~~p~~-~~~~~li~~~~~--~g~~~~A~--~----------l~~~m~~~g------------~~p~~------  277 (638)
                      .-..+.  -||+ ..-|.......+  .|+..++.  +          ..+.+.+.+            +.|..      
T Consensus       209 ~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPE  286 (557)
T KOG3785|consen  209 KVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPE  286 (557)
T ss_pred             HHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChH
Confidence            654432  2443 333333322222  23322211  1          111111111            11110      


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCC
Q 006615          278 AMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWS  357 (638)
Q Consensus       278 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (638)
                      +-.+++.-|.+.+++++|..+.+++.+...-.-                                         .+++. 
T Consensus       287 ARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~Ey-----------------------------------------ilKgv-  324 (557)
T KOG3785|consen  287 ARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEY-----------------------------------------ILKGV-  324 (557)
T ss_pred             hhhhheeeecccccHHHHHHHHhhcCCCChHHH-----------------------------------------HHHHH-
Confidence            112344556778888888888887754321000                                         00000 


Q ss_pred             HHHHHHhhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 006615          358 PEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYA-LEKMLTILARHGHVELVDRLIAKLRSDG  436 (638)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~-~~~li~~~~~~g~~~~a~~l~~~m~~~g  436 (638)
                                    ....+++-.........|.++|.-+ ..++...|... -.++..++.-..++++++..++.+...-
T Consensus       325 --------------v~aalGQe~gSreHlKiAqqffqlV-G~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF  389 (557)
T KOG3785|consen  325 --------------VFAALGQETGSREHLKIAQQFFQLV-GESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYF  389 (557)
T ss_pred             --------------HHHHhhhhcCcHHHHHHHHHHHHHh-cccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                          0000111111122344577777665 34444444433 4466667777788999988888887654


Q ss_pred             CCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHH-HHHHHHccCChHHHHHHHHHHHhCCCCcch
Q 006615          437 MRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSS-LLRTLTKCKRDFDAINVLEEMIFSGIVPDV  515 (638)
Q Consensus       437 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~A~~l~~~m~~~g~~p~~  515 (638)
                      ..-|..-+ .+.++++..|.+.+|+++|-.+...    .-.|. .+|-+ |..+|.+++..+.|+.++-.+..   +.+.
T Consensus       390 ~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~----~ikn~-~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~  460 (557)
T KOG3785|consen  390 TNDDDFNL-NLAQAKLATGNYVEAEELFIRISGP----EIKNK-ILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSER  460 (557)
T ss_pred             cCcchhhh-HHHHHHHHhcChHHHHHHHhhhcCh----hhhhh-HHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhH
Confidence            44344444 4678999999999999999886532    11232 56655 45688999999999887655543   3355


Q ss_pred             hhHHHHH-HHHHccCCHHHHHHHHHHHHhCCCCCCHhhHH
Q 006615          516 QTFSGLM-YHFALQGDEKIVQKLFSMVRQNGVEPDAYMFK  554 (638)
Q Consensus       516 ~t~~~li-~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~  554 (638)
                      .+.-.+| +-|-+.+.+--|-+-|+++...  .|+..-|.
T Consensus       461 fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnWe  498 (557)
T KOG3785|consen  461 FSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENWE  498 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCccccC
Confidence            5555555 5788888888888888888875  46555553

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.71  E-value=0.00013  Score=73.36  Aligned_cols=60  Identities=12%  Similarity=-0.021  Sum_probs=39.4

Q ss_pred             HHHHHHHccCChHHHHHHHHHHHhCCCCc------chhhHHHHH--HHHHccCCHHHHHHHHHHHHhC
Q 006615          485 SLLRTLTKCKRDFDAINVLEEMIFSGIVP------DVQTFSGLM--YHFALQGDEKIVQKLFSMVRQN  544 (638)
Q Consensus       485 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p------~~~t~~~li--~~~~~~g~~~~a~~l~~~m~~~  544 (638)
                      ....++...|+.+.|.++++.+......+      ...+-..++  -++...|+.++|.+.+......
T Consensus       269 ~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~  336 (355)
T cd05804         269 HAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD  336 (355)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            46667788889999999998886632220      111222233  3455789999999998877653

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.68  E-value=0.00014  Score=76.53  Aligned_cols=215  Identities=15%  Similarity=0.151  Sum_probs=108.3

Q ss_pred             CchhhHHHHhchhhhHHHHHHHHhcCCCCcchhhhccCCCCHHHHHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHH
Q 006615           28 PFTNKLALYLRRAQLIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHA  107 (638)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~  107 (638)
                      .|.+-+..|+=+.++...+.-..+...+..++           .++.++..-.-.++.++-+-..... .++     -..
T Consensus       781 ~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p-----------~VvG~LLD~dC~E~~ik~Li~~v~g-q~~-----~de  843 (1666)
T KOG0985|consen  781 DFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTP-----------QVVGALLDVDCSEDFIKNLILSVRG-QFP-----VDE  843 (1666)
T ss_pred             ccHHHHHHHHHHhhHHHHHHHHHhhcCCcccc-----------hhhhhhhcCCCcHHHHHHHHHHHhc-cCC-----hHH
Confidence            35555566665666555555555444433332           1444554444344433332222221 122     234


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCC
Q 006615          108 LATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGK  187 (638)
Q Consensus       108 li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~  187 (638)
                      +..-+-+.+++.....+++...+.|. .|..++|+|...|...++-.+-.      .+.+    ..-=+..+.-||..++
T Consensus       844 Lv~EvEkRNRLklLlp~LE~~i~eG~-~d~a~hnAlaKIyIDSNNnPE~f------LkeN----~yYDs~vVGkYCEKRD  912 (1666)
T KOG0985|consen  844 LVEEVEKRNRLKLLLPWLESLIQEGS-QDPATHNALAKIYIDSNNNPERF------LKEN----PYYDSKVVGKYCEKRD  912 (1666)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHhccC-cchHHHhhhhheeecCCCChHHh------cccC----CcchhhHHhhhhcccC
Confidence            56666777888888888888887774 56677888888888776544321      1111    1111223455676666


Q ss_pred             hHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHHcCCHHHHHHHH-----------HhcccCCC--ccCHhHHHHHHH
Q 006615          188 NFEAVETFRQVIDE----GAIPNSRTYTVMIEHLVNLGKLDSALEVF-----------SALPLMRI--KRTSKQYLILVE  250 (638)
Q Consensus       188 ~~~A~~~~~~m~~~----g~~p~~~ty~~li~~~~~~g~~~~A~~~~-----------~~m~~~g~--~p~~~~~~~li~  250 (638)
                      +--|.-.|++-...    ++.-....|....+...+..+.+--.+++           ++..+.++  ..|..-.+.-+.
T Consensus       913 P~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVk  992 (1666)
T KOG0985|consen  913 PHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVK  992 (1666)
T ss_pred             CceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHH
Confidence            65554443321110    01111223333344444444443333332           22322222  234455566677


Q ss_pred             HHHccCCHHHHHHHHHHHHh
Q 006615          251 GFVGVERFDEAKSLLNEMRD  270 (638)
Q Consensus       251 ~~~~~g~~~~A~~l~~~m~~  270 (638)
                      ++...+-..+-+++++++.-
T Consensus       993 AfMtadLp~eLIELLEKIvL 1012 (1666)
T KOG0985|consen  993 AFMTADLPNELIELLEKIVL 1012 (1666)
T ss_pred             HHHhcCCcHHHHHHHHHHhc
Confidence            77777777777777777753

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.64  E-value=0.00017  Score=72.63  Aligned_cols=198  Identities=9%  Similarity=-0.029  Sum_probs=127.1

Q ss_pred             HHHHHHHcCCChhHHHHHHHHHHcCCCCCCChhH-HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHH---HHHH
Q 006615           71 IVTHALRSAPNADSALSIMEALKSNPNFSHNQST-LHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN---LMQW  146 (638)
Q Consensus        71 ~~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~-~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~---ll~~  146 (638)
                      .+...+...|+++.+...+....+.....++... .......+...|+++.+..++++..+.. +.+...+..   +...
T Consensus        11 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~   89 (355)
T cd05804          11 AAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAFGL   89 (355)
T ss_pred             HHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHh
Confidence            3445555667788877777766643323333322 2222334567799999999999887653 334333332   1111


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 006615          147 YSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSA  226 (638)
Q Consensus       147 ~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A  226 (638)
                      ....+..+.+.+.++. .....+.+......+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|
T Consensus        90 ~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA  167 (355)
T cd05804          90 GDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEG  167 (355)
T ss_pred             cccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHH
Confidence            1224555556665554 112222233444556677888999999999999998853 22566778888889999999999


Q ss_pred             HHHHHhcccCCC-ccCH--hHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006615          227 LEVFSALPLMRI-KRTS--KQYLILVEGFVGVERFDEAKSLLNEMRDD  271 (638)
Q Consensus       227 ~~~~~~m~~~g~-~p~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~  271 (638)
                      ...+++.....- .|+.  ..|..+...+...|++++|..++++....
T Consensus       168 ~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~  215 (355)
T cd05804         168 IAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP  215 (355)
T ss_pred             HHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence            999988765321 1232  34557788899999999999999998543

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.61  E-value=0.0013  Score=68.99  Aligned_cols=152  Identities=13%  Similarity=0.040  Sum_probs=90.5

Q ss_pred             HHHHHHHHHcccCCHH---HHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHH
Q 006615          443 TIRLIIDFYGISKKAD---AALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS  519 (638)
Q Consensus       443 ~~~~li~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~  519 (638)
                      +.+.|++.|-+.++..   +|+-+++.....     .|.+..+=-.+|..|+-.|-...|.++|+.|--+.+.-|..-|.
T Consensus       438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~-----s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~  512 (932)
T KOG2053|consen  438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTK-----SPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL  512 (932)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhc-----CCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH
Confidence            3467888888888755   444555544332     22222444567888888899999999999987777777766654


Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHH--------------hhhCCCCCCHHHHHHHHHHHhc
Q 006615          520 GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY--------------LSNSNLMPDAATKELLKKSLWK  585 (638)
Q Consensus       520 ~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~--------------m~~~g~~p~~~~~~~li~~~~~  585 (638)
                      + .+-+...|++..+-..++...+-=-..-..+-..+..+|-+.              |...-..--..+-+..++.++.
T Consensus       513 ~-~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~  591 (932)
T KOG2053|consen  513 I-FRRAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAYRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCN  591 (932)
T ss_pred             H-HHHHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3 344556677766666665433210000111222333333332              2221222223345778888889


Q ss_pred             cCcHHHHHHHHHHHH
Q 006615          586 EGRRKEAAAVEERCE  600 (638)
Q Consensus       586 ~g~~~~A~~~~~~~~  600 (638)
                      .++.++-.+.+..|+
T Consensus       592 ~~~~~q~~~~~~~~~  606 (932)
T KOG2053|consen  592 ADRGTQLLKLLESMK  606 (932)
T ss_pred             CCcHHHHHHHHhccc
Confidence            999999888888766

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.59  E-value=0.00073  Score=71.48  Aligned_cols=202  Identities=11%  Similarity=0.158  Sum_probs=114.1

Q ss_pred             HHHHHHHHHcCCChhHHHHHHHHHHcC-CCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHH
Q 006615           69 PFIVTHALRSAPNADSALSIMEALKSN-PNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWY  147 (638)
Q Consensus        69 ~~~~~~~l~~~~~~~~Al~~~~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~  147 (638)
                      ..+.+.++...+-+.+-+++++.+.-. ..+.-+...-|.++-...+. +.....+..+++-.-. .|+      +....
T Consensus       987 vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyD-a~~------ia~ia 1058 (1666)
T KOG0985|consen  987 VSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYD-APD------IAEIA 1058 (1666)
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCC-chh------HHHHH
Confidence            344667777777777777777776632 22333333334444333333 2333333444433321 122      33445


Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 006615          148 STSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSAL  227 (638)
Q Consensus       148 ~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~  227 (638)
                      ...+-+++|..+|+....     +..+.+.||.-   -+..+.|.++-++.-      ....|..+.++-.+.|.+.+|.
T Consensus      1059 i~~~LyEEAF~ifkkf~~-----n~~A~~VLie~---i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAi 1124 (1666)
T KOG0985|consen 1059 IENQLYEEAFAIFKKFDM-----NVSAIQVLIEN---IGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAI 1124 (1666)
T ss_pred             hhhhHHHHHHHHHHHhcc-----cHHHHHHHHHH---hhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHH
Confidence            556666777777765432     24445555543   255666666555432      3456777777777777777777


Q ss_pred             HHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHH
Q 006615          228 EVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFL  299 (638)
Q Consensus       228 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~  299 (638)
                      +-|-+.      -|...|..+|+...+.|.+++-.+.+.-.++..-.|... ..++.+|++.+++.+..+++
T Consensus      1125 eSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id-~eLi~AyAkt~rl~elE~fi 1189 (1666)
T KOG0985|consen 1125 ESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID-SELIFAYAKTNRLTELEEFI 1189 (1666)
T ss_pred             HHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch-HHHHHHHHHhchHHHHHHHh
Confidence            666443      255667777777777777777777776555555444332 24566777777776665554

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.59  E-value=5.2e-05  Score=66.52  Aligned_cols=160  Identities=17%  Similarity=0.098  Sum_probs=113.2

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHH
Q 006615          140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIP-NSRTYTVMIEHLV  218 (638)
Q Consensus       140 ~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~ty~~li~~~~  218 (638)
                      ...|.-.|.+.|+...|..-+++..+.+ +.+..+|..+...|-+.|..+.|.+.|++..+.  .| +..+.|.--..+|
T Consensus        38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~FLC  114 (250)
T COG3063          38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAFLC  114 (250)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHHHH
Confidence            4456667888888888888888888775 445667888888888888888888888887774  34 5566677777778


Q ss_pred             HcCCHHHHHHHHHhcccCCCcc-CHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHH
Q 006615          219 NLGKLDSALEVFSALPLMRIKR-TSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANE  297 (638)
Q Consensus       219 ~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~  297 (638)
                      ..|++++|.+.|++.....--+ -..+|..+.-+..+.|+++.|.+.|++..+....-+.....+.....+.|++..|..
T Consensus       115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~  194 (250)
T COG3063         115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL  194 (250)
T ss_pred             hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence            8888888888888766522111 245677777777888888888888888777655444444556666666666666666


Q ss_pred             HHHHh
Q 006615          298 FLREM  302 (638)
Q Consensus       298 ~~~~~  302 (638)
                      +++..
T Consensus       195 ~~~~~  199 (250)
T COG3063         195 YLERY  199 (250)
T ss_pred             HHHHH
Confidence            66555

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.59  E-value=0.00011  Score=66.69  Aligned_cols=320  Identities=13%  Similarity=0.074  Sum_probs=170.4

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHH-HHHHH
Q 006615          105 LHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIV-MSVYA  183 (638)
Q Consensus       105 ~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~l-i~~~~  183 (638)
                      +.+++..+.+..++.++.+++....++. +.+......|...|-...++..|-..++++-..-  |...-|... ...+-
T Consensus        13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQSLY   89 (459)
T KOG4340|consen   13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQSLY   89 (459)
T ss_pred             hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHHHH
Confidence            4555555566666666666666555442 2244445556666666667777777777665542  434444322 34455


Q ss_pred             hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHH
Q 006615          184 KTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLV--NLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEA  261 (638)
Q Consensus       184 ~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A  261 (638)
                      +.+.+.+|+.+...|...   |+...-..-+.+-.  ..+++-.+..++++....|   +..+.+...-...+.|++++|
T Consensus        90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaA  163 (459)
T KOG4340|consen   90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAA  163 (459)
T ss_pred             HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHH
Confidence            566667777776666542   22222222222222  3456666666666665322   333333344444566777777


Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCCCcccccccccc
Q 006615          262 KSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLK  341 (638)
Q Consensus       262 ~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (638)
                      .+-|+...+.+-.-....|++..+..+.|+.+.|.+...++...+........+ |   ...                  
T Consensus       164 vqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgI-G---m~t------------------  221 (459)
T KOG4340|consen  164 VQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGI-G---MTT------------------  221 (459)
T ss_pred             HHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCc-c---cee------------------
Confidence            777766654432222334455555666677777777766665444321111000 0   000                  


Q ss_pred             CCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCC
Q 006615          342 PWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGH  421 (638)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~  421 (638)
                      ...+...+...+..         ..++.+...++-....-+.++++.|.+.+..|..+.....|++|...+.-.= ..++
T Consensus       222 egiDvrsvgNt~~l---------h~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~  291 (459)
T KOG4340|consen  222 EGIDVRSVGNTLVL---------HQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDAR  291 (459)
T ss_pred             ccCchhcccchHHH---------HHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCC
Confidence            00011111111110         0011111122223333456888889999988877777777888876654222 2344


Q ss_pred             hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHh
Q 006615          422 VELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD  466 (638)
Q Consensus       422 ~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  466 (638)
                      +....+=+.-+...++ ....||..++-.||++.-++-|-.++.+
T Consensus       292 p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAE  335 (459)
T KOG4340|consen  292 PTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAE  335 (459)
T ss_pred             ccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence            5555555555555554 3457888888899999999988888876

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.56  E-value=0.00066  Score=70.00  Aligned_cols=426  Identities=13%  Similarity=0.029  Sum_probs=240.5

Q ss_pred             HHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCchHhHHHHHHHHH-h
Q 006615           72 VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSK-FLNVSVNFMNLMQWYS-T  149 (638)
Q Consensus        72 ~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~-~~~~~~~~~~ll~~~~-~  149 (638)
                      +.-++...|+++.+.+.|+.....  ..-....|+.+...+...|.-..|..+++.-.... .++|...+-..-+.|. +
T Consensus       329 Lt~al~~~g~f~~lae~fE~~~~~--~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~  406 (799)
T KOG4162|consen  329 LTFALSRCGQFEVLAEQFEQALPF--SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIER  406 (799)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHh--hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhc
Confidence            455677788888888888877632  22334567777777888888777777776544322 2233333332233333 2


Q ss_pred             cCCHHHHHHHHHHHHh--cCC--CCCHHhHHHHHHHHHhc-----------CChHHHHHHHHHHHHcC-CCCCHHHHHHH
Q 006615          150 SGDLELVLSTWNEYRQ--RAK--LLSTESYNIVMSVYAKT-----------GKNFEAVETFRQVIDEG-AIPNSRTYTVM  213 (638)
Q Consensus       150 ~g~~~~A~~l~~~m~~--~~~--~p~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~g-~~p~~~ty~~l  213 (638)
                      .|.+++++..-.+...  .+.  ......|..+.-+|...           ....++++.+++..+.+ -.|+..-|-  
T Consensus       407 l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~l--  484 (799)
T KOG4162|consen  407 LKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYL--  484 (799)
T ss_pred             hhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHH--
Confidence            3555555555544443  110  11234455554444331           12356777788777643 234333332  


Q ss_pred             HHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHcCC
Q 006615          214 IEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM--RVALERMQEMGF  291 (638)
Q Consensus       214 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~--~~ll~~~~~~g~  291 (638)
                      ---|+..++++.|.+..++..+.+-.-+...|.-|.-.+...+++.+|+.+.+.....-  |++..  ..-++.=..-++
T Consensus       485 alq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~--~~N~~l~~~~~~i~~~~~~  562 (799)
T KOG4162|consen  485 ALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF--GDNHVLMDGKIHIELTFND  562 (799)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh--hhhhhhchhhhhhhhhccc
Confidence            23367778888898888888776445678888888888888899999998887664421  11111  011111122556


Q ss_pred             hHHHHHHHHHhCcCcc-ccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcc
Q 006615          292 IQGANEFLREMLPDKR-IKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFV  370 (638)
Q Consensus       292 ~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (638)
                      .+++......+..--. .+.+..     ..++....+...+.+.... ....-.........+..      +....    
T Consensus       563 ~e~~l~t~~~~L~~we~~~~~q~-----~~~~g~~~~lk~~l~la~~-q~~~a~s~sr~ls~l~a------~~~~~----  626 (799)
T KOG4162|consen  563 REEALDTCIHKLALWEAEYGVQQ-----TLDEGKLLRLKAGLHLALS-QPTDAISTSRYLSSLVA------SQLKS----  626 (799)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHhh-----hhhhhhhhhhhcccccCcc-cccccchhhHHHHHHHH------hhhhh----
Confidence            6666555444321000 000000     0000000111111111111 00000011111111100      00000    


Q ss_pred             cchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCC------HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 006615          371 WTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHD------VYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTI  444 (638)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~------~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~  444 (638)
                                  .+. +..+..+.   ..+  .|+      ...|......+.+.+..++|...+.+..... ......|
T Consensus       627 ------------~~s-e~~Lp~s~---~~~--~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~  687 (799)
T KOG4162|consen  627 ------------AGS-ELKLPSST---VLP--GPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVY  687 (799)
T ss_pred             ------------ccc-ccccCccc---ccC--CCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHH
Confidence                        000 00011110   000  122      2235566667788888899887777766543 2345666


Q ss_pred             HHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHH--HHHHHHhCCCCcchhhHHHHH
Q 006615          445 RLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAIN--VLEEMIFSGIVPDVQTFSGLM  522 (638)
Q Consensus       445 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~--l~~~m~~~g~~p~~~t~~~li  522 (638)
                      ......+-..|..++|.+.|......     +|+.+.+.+++...+.+.|+..-|..  ++.++.+.+ +-+...|-.+-
T Consensus       688 ~~~G~~~~~~~~~~EA~~af~~Al~l-----dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG  761 (799)
T KOG4162|consen  688 YLRGLLLEVKGQLEEAKEAFLVALAL-----DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLG  761 (799)
T ss_pred             HHhhHHHHHHHhhHHHHHHHHHHHhc-----CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence            66667778889999999999987754     66667889999999999998888877  999999875 23677899999


Q ss_pred             HHHHccCCHHHHHHHHHHHHhC
Q 006615          523 YHFALQGDEKIVQKLFSMVRQN  544 (638)
Q Consensus       523 ~~~~~~g~~~~a~~l~~~m~~~  544 (638)
                      ..+-+.|+.++|.+.|....+.
T Consensus       762 ~v~k~~Gd~~~Aaecf~aa~qL  783 (799)
T KOG4162|consen  762 EVFKKLGDSKQAAECFQAALQL  783 (799)
T ss_pred             HHHHHccchHHHHHHHHHHHhh
Confidence            9999999999999999887764

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.55  E-value=0.0009  Score=63.88  Aligned_cols=166  Identities=10%  Similarity=-0.021  Sum_probs=127.0

Q ss_pred             cccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006615          369 FVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLII  448 (638)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li  448 (638)
                      .+...++-+.++...+++.+|.-.|+....-.  +-+...|.-++.+|...|.+.+|.-+-+..... +.-+..+.+.+.
T Consensus       333 ~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La--p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g  409 (564)
T KOG1174|consen  333 NHEALILKGRLLIALERHTQAVIAFRTAQMLA--PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFG  409 (564)
T ss_pred             cchHHHhccHHHHhccchHHHHHHHHHHHhcc--hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhc
Confidence            44455667888888999999999999875433  346778999999999999999988776654332 112444444442


Q ss_pred             -HHHcc-cCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHH
Q 006615          449 -DFYGI-SKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFA  526 (638)
Q Consensus       449 -~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~  526 (638)
                       ..+.- ..--++|.++++.....     .|+...+.+.+...+...|+.+++..++++....  .||....+.|-+.+.
T Consensus       410 ~~V~~~dp~~rEKAKkf~ek~L~~-----~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~  482 (564)
T KOG1174|consen  410 TLVLFPDPRMREKAKKFAEKSLKI-----NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMR  482 (564)
T ss_pred             ceeeccCchhHHHHHHHHHhhhcc-----CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHH
Confidence             33332 33467899999886644     5665567788888899999999999999998874  799999999999999


Q ss_pred             ccCCHHHHHHHHHHHHhC
Q 006615          527 LQGDEKIVQKLFSMVRQN  544 (638)
Q Consensus       527 ~~g~~~~a~~l~~~m~~~  544 (638)
                      ....+.+|+..|....+.
T Consensus       483 A~Ne~Q~am~~y~~ALr~  500 (564)
T KOG1174|consen  483 AQNEPQKAMEYYYKALRQ  500 (564)
T ss_pred             HhhhHHHHHHHHHHHHhc
Confidence            999999999999988874

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.54  E-value=0.00049  Score=78.75  Aligned_cols=137  Identities=14%  Similarity=0.091  Sum_probs=83.6

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCCHH--HH--HHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHH
Q 006615          408 ALEKMLTILARHGHVELVDRLIAKLRSDG--MRLPFS--TI--RLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLML  481 (638)
Q Consensus       408 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g--~~~~~~--~~--~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  481 (638)
                      .+..+...+...|+++.|.+.+.......  ......  ..  ...+..+...|+.+.|...+............ ....
T Consensus       614 ~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~-~~~~  692 (903)
T PRK04841        614 CLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNH-FLQG  692 (903)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccch-hHHH
Confidence            34445566777888888888887764321  111110  00  11223445578888888887765432111110 0112


Q ss_pred             HHHHHHHHHHccCChHHHHHHHHHHHhC----CCCcc-hhhHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 006615          482 LYSSLLRTLTKCKRDFDAINVLEEMIFS----GIVPD-VQTFSGLMYHFALQGDEKIVQKLFSMVRQNG  545 (638)
Q Consensus       482 ~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~  545 (638)
                      .+..+...+...|+.++|...+++....    |..++ ..+...+-.++...|+.++|...+.+..+..
T Consensus       693 ~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la  761 (903)
T PRK04841        693 QWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA  761 (903)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            2445667788889999999998887653    33332 3456666678889999999999998888654

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=98.54  E-value=0.0016  Score=65.84  Aligned_cols=448  Identities=12%  Similarity=0.129  Sum_probs=227.8

Q ss_pred             HHHHHHcCCChhHHHHHHHHHHcCCC-----CCCChhHHHHHHHHHHhcCChHHH---HHHHHHHHhCCCCCchHhHHHH
Q 006615           72 VTHALRSAPNADSALSIMEALKSNPN-----FSHNQSTLHALATVLAKSQRNHEL---KTLIGDISSSKFLNVSVNFMNL  143 (638)
Q Consensus        72 ~~~~l~~~~~~~~Al~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~~~~~~a---~~l~~~~~~~~~~~~~~~~~~l  143 (638)
                      .+..|+..+++++|-+.+..+...+.     .+.+...|+.+-...++..+.-..   ..+++.+...--..-...|++|
T Consensus       175 yie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SL  254 (835)
T KOG2047|consen  175 YIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSL  254 (835)
T ss_pred             HHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHH
Confidence            56777888888888888887763221     133444566666665555443322   2233333322111123468899


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhc----------------C------ChHHHHHHHHHHHHc
Q 006615          144 MQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKT----------------G------KNFEAVETFRQVIDE  201 (638)
Q Consensus       144 l~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~----------------g------~~~~A~~~~~~m~~~  201 (638)
                      .+.|.+.|.++.|..+|++-.+.-  .++.-|..+.++|++-                +      +++-.+.-|+.+...
T Consensus       255 AdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~r  332 (835)
T KOG2047|consen  255 ADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNR  332 (835)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhc
Confidence            999999999999999999876652  2234455555554431                1      122233334444332


Q ss_pred             CC----------CC-CHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCcc------CHhHHHHHHHHHHccCCHHHHHHH
Q 006615          202 GA----------IP-NSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKR------TSKQYLILVEGFVGVERFDEAKSL  264 (638)
Q Consensus       202 g~----------~p-~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p------~~~~~~~li~~~~~~g~~~~A~~l  264 (638)
                      +.          .| +..+|..-.  -+..|+..+-...|.+..+. +.|      -...|..+...|-..|+++.|..+
T Consensus       333 r~~~lNsVlLRQn~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvi  409 (835)
T KOG2047|consen  333 RPLLLNSVLLRQNPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVI  409 (835)
T ss_pred             cchHHHHHHHhcCCccHHHHHhhh--hhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHH
Confidence            11          01 122222211  12345566666666655432 112      124577788888888888888888


Q ss_pred             HHHHHhCCCCCCH----HHHHHHHHHHHcCChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCCCccccccccc
Q 006615          265 LNEMRDDGKFPGR----AMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQL  340 (638)
Q Consensus       265 ~~~m~~~g~~p~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (638)
                      |++..+....--.    ++......=.++.+++.|..+++....-...+...++..+...          +..+  .-.+
T Consensus       410 feka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pv----------Q~rl--hrSl  477 (835)
T KOG2047|consen  410 FEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPV----------QARL--HRSL  477 (835)
T ss_pred             HHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcH----------HHHH--HHhH
Confidence            8887665544322    2223344445666777777777665432222221222211100          0000  0000


Q ss_pred             cCCCChhhHHHHhhcCC--HHHHHHhhcCCcccchHH--HHHHHhccCChhHHHHHHHHHhcCCCCcCCH-HHHHHHHHH
Q 006615          341 KPWLDPKALANTLDEWS--PEVVSLLADAKFVWTTRL--VCKVLRHFKSPETAWHFFCWVAYQPGYTHDV-YALEKMLTI  415 (638)
Q Consensus       341 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~  415 (638)
                      +-|.---.+.+++-.+.  ..+...+.+..+..-.++  .+..+....-++++.+.|+.-...-. -|++ ..|+..+.-
T Consensus       478 kiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk-~p~v~diW~tYLtk  556 (835)
T KOG2047|consen  478 KIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFK-WPNVYDIWNTYLTK  556 (835)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCC-CccHHHHHHHHHHH
Confidence            00000000111110000  001111111111111111  33445556677778888776432222 2333 356666665


Q ss_pred             HHh---cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHH
Q 006615          416 LAR---HGHVELVDRLIAKLRSDGMRLPFSTIRLIIDF--YGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTL  490 (638)
Q Consensus       416 ~~~---~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~  490 (638)
                      +.+   ...++.|.++|++..+ |++|...-+--|+-+  =-+-|....|+.++++.......   .+-...||..|.--
T Consensus       557 fi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~---a~~l~myni~I~ka  632 (835)
T KOG2047|consen  557 FIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKE---AQRLDMYNIYIKKA  632 (835)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHHH
Confidence            544   2357888888888887 666544322222211  12346777888888886543221   12235788887765


Q ss_pred             HccCChHHHHHHHHHHHhCCCCcchhhHHHHHH---HHHccCCHHHHHHHHHHHHh
Q 006615          491 TKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMY---HFALQGDEKIVQKLFSMVRQ  543 (638)
Q Consensus       491 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~---~~~~~g~~~~a~~l~~~m~~  543 (638)
                      +..=-......+|++.++.  -||...-...|+   .=++.|.++.|..++..--+
T Consensus       633 ae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq  686 (835)
T KOG2047|consen  633 AEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQ  686 (835)
T ss_pred             HHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh
Confidence            5554555667777777775  466554443333   33567888888888765444

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.53  E-value=0.00026  Score=73.05  Aligned_cols=77  Identities=16%  Similarity=0.192  Sum_probs=62.9

Q ss_pred             HHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccC
Q 006615          376 VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISK  455 (638)
Q Consensus       376 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g  455 (638)
                      .+.++...|.++.|+.+|...          .-|-++++..|-.|+.++|-.+-++   .|   |....-.+...|-..|
T Consensus       918 WgqYlES~GemdaAl~~Y~~A----------~D~fs~VrI~C~qGk~~kAa~iA~e---sg---d~AAcYhlaR~YEn~g  981 (1416)
T KOG3617|consen  918 WGQYLESVGEMDAALSFYSSA----------KDYFSMVRIKCIQGKTDKAARIAEE---SG---DKAACYHLARMYENDG  981 (1416)
T ss_pred             HHHHHhcccchHHHHHHHHHh----------hhhhhheeeEeeccCchHHHHHHHh---cc---cHHHHHHHHHHhhhhH
Confidence            678888899999999999853          3477888889999999999887664   33   6666667888999999


Q ss_pred             CHHHHHHHHHhch
Q 006615          456 KADAALKAFHDDR  468 (638)
Q Consensus       456 ~~~~A~~~~~~~~  468 (638)
                      ++.+|...|-+.+
T Consensus       982 ~v~~Av~FfTrAq  994 (1416)
T KOG3617|consen  982 DVVKAVKFFTRAQ  994 (1416)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998743

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.52  E-value=7.6e-06  Score=78.07  Aligned_cols=67  Identities=15%  Similarity=0.054  Sum_probs=41.5

Q ss_pred             cCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCH-HHHHHHHHhchhc
Q 006615          403 THDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKA-DAALKAFHDDRTL  470 (638)
Q Consensus       403 ~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~  470 (638)
                      .+++.+.+.+..++...|++++|.+++.+....+.. +..+...++.+....|+. +.+.+++.+++..
T Consensus       198 ~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~  265 (290)
T PF04733_consen  198 GSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLSQLKQS  265 (290)
T ss_dssp             --SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence            346666777777777778888887777776655433 455555666666666665 6666777776654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.50  E-value=5.7e-05  Score=76.66  Aligned_cols=135  Identities=14%  Similarity=0.138  Sum_probs=71.3

Q ss_pred             HHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCC
Q 006615          377 CKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKK  456 (638)
Q Consensus       377 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~  456 (638)
                      +..+...|+++.|...|-+..          ..-.-+.+.....++.+|+.+++.+++++..  ..-|..+.+-|+..|+
T Consensus       713 g~hl~~~~q~daainhfiea~----------~~~kaieaai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~d  780 (1636)
T KOG3616|consen  713 GDHLEQIGQLDAAINHFIEAN----------CLIKAIEAAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGD  780 (1636)
T ss_pred             hHHHHHHHhHHHHHHHHHHhh----------hHHHHHHHHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchh
Confidence            344444556666665554321          1112334445556666666666666655432  2345555566666666


Q ss_pred             HHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHH
Q 006615          457 ADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQK  536 (638)
Q Consensus       457 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~  536 (638)
                      ++.|.++|-+.             ..++-.|.+|.+.|+++.|.++-.+.  .|-......|-+-..-+-.+|++.+|.+
T Consensus       781 fe~ae~lf~e~-------------~~~~dai~my~k~~kw~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeq  845 (1636)
T KOG3616|consen  781 FEIAEELFTEA-------------DLFKDAIDMYGKAGKWEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQ  845 (1636)
T ss_pred             HHHHHHHHHhc-------------chhHHHHHHHhccccHHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhh
Confidence            66666666551             23555566666666666666654333  2222334444444444555555555555


Q ss_pred             HH
Q 006615          537 LF  538 (638)
Q Consensus       537 l~  538 (638)
                      ++
T Consensus       846 ly  847 (1636)
T KOG3616|consen  846 LY  847 (1636)
T ss_pred             ee
Confidence            44

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.46  E-value=0.00011  Score=64.65  Aligned_cols=194  Identities=13%  Similarity=0.129  Sum_probs=129.9

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHh
Q 006615          105 LHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAK  184 (638)
Q Consensus       105 ~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~  184 (638)
                      .-.+.-.|...|+...|+.-+++.++.. +.+..+|..+...|-+.|..+.|.+-|+...+.. +-+....|..-.-+|.
T Consensus        38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~  115 (250)
T COG3063          38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA  115 (250)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence            3445555677788888888777777653 3344567777777778888888888888777654 3456667777777788


Q ss_pred             cCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHH
Q 006615          185 TGKNFEAVETFRQVIDEGAIP-NSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKS  263 (638)
Q Consensus       185 ~g~~~~A~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~  263 (638)
                      .|++++|...|++....-.-| -..||..+.-+..+.|+.+.|.+.|.+-.+.. .-...+.-.+.....+.|++..|..
T Consensus       116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~  194 (250)
T COG3063         116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARL  194 (250)
T ss_pred             CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHH
Confidence            888888888888777752222 24567777666777788888888887766542 1123456667777777888888888


Q ss_pred             HHHHHHhCCCCCCHHHH-HHHHHHHHcCChHHHHHHHHHh
Q 006615          264 LLNEMRDDGKFPGRAMR-VALERMQEMGFIQGANEFLREM  302 (638)
Q Consensus       264 l~~~m~~~g~~p~~~~~-~ll~~~~~~g~~~~a~~~~~~~  302 (638)
                      .++.....+. ++.... ..+..-...|+.+.+-++=.++
T Consensus       195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL  233 (250)
T COG3063         195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQL  233 (250)
T ss_pred             HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            8877776665 444433 4455556667777666655444

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.46  E-value=2.1e-05  Score=75.12  Aligned_cols=154  Identities=18%  Similarity=0.154  Sum_probs=74.3

Q ss_pred             HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCC
Q 006615          416 LARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKR  495 (638)
Q Consensus       416 ~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  495 (638)
                      +...|++++|++++..-      -+.......+..|.+.++++.|.+.++.|.+...   +.-......+.+....-.+.
T Consensus       112 ~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~e---D~~l~qLa~awv~l~~g~e~  182 (290)
T PF04733_consen  112 LFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQIDE---DSILTQLAEAWVNLATGGEK  182 (290)
T ss_dssp             HCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSC---CHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---cHHHHHHHHHHHHHHhCchh
Confidence            33445555555544321      1344444455555555555555555555544211   00001111222222222345


Q ss_pred             hHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHHhhhCCCCCCHHH
Q 006615          496 DFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAAT  575 (638)
Q Consensus       496 ~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~m~~~g~~p~~~~  575 (638)
                      +.+|..+|+++.+. ..++..+.|.+..++...|++++|.+++.+....+  |+                      +..+
T Consensus       183 ~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~--~~----------------------~~d~  237 (290)
T PF04733_consen  183 YQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD--PN----------------------DPDT  237 (290)
T ss_dssp             CCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---CC----------------------HHHH
T ss_pred             HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--cC----------------------CHHH
Confidence            67777777776553 44566666777777777777777777766655432  22                      2334


Q ss_pred             HHHHHHHHhccCcH-HHHHHHHHHHHHcc
Q 006615          576 KELLKKSLWKEGRR-KEAAAVEERCEKIN  603 (638)
Q Consensus       576 ~~~li~~~~~~g~~-~~A~~~~~~~~~~~  603 (638)
                      ...++-+....|+. +.+.+.++++++..
T Consensus       238 LaNliv~~~~~gk~~~~~~~~l~qL~~~~  266 (290)
T PF04733_consen  238 LANLIVCSLHLGKPTEAAERYLSQLKQSN  266 (290)
T ss_dssp             HHHHHHHHHHTT-TCHHHHHHHHHCHHHT
T ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHHhC
Confidence            44445555555555 55666666665544

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.43  E-value=0.0032  Score=64.51  Aligned_cols=409  Identities=11%  Similarity=0.111  Sum_probs=226.2

Q ss_pred             CHHHHHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHH
Q 006615           68 DPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWY  147 (638)
Q Consensus        68 ~~~~~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~  147 (638)
                      +-...+..|.++|.+..|.+....=.   .+..|......+..++.+..-++.|-.+|+++..         +.--+..|
T Consensus       617 d~laaiqlyika~~p~~a~~~a~n~~---~l~~de~il~~ia~alik~elydkagdlfeki~d---------~dkale~f  684 (1636)
T KOG3616|consen  617 DGLAAIQLYIKAGKPAKAARAALNDE---ELLADEEILEHIAAALIKGELYDKAGDLFEKIHD---------FDKALECF  684 (1636)
T ss_pred             ccHHHHHHHHHcCCchHHHHhhcCHH---HhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC---------HHHHHHHH
Confidence            33446788888888888776543222   2344555666677777777777777777766653         11122222


Q ss_pred             HhcCCHHHHHHHHH----------------HHHhcCCCCCH--------HhHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 006615          148 STSGDLELVLSTWN----------------EYRQRAKLLST--------ESYNIVMSVYAKTGKNFEAVETFRQVIDEGA  203 (638)
Q Consensus       148 ~~~g~~~~A~~l~~----------------~m~~~~~~p~~--------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~  203 (638)
                      -+..-+.+|.++-+                .+.+.| ..|.        ...---|.+....+.|.+|+.+++.+.....
T Consensus       685 kkgdaf~kaielarfafp~evv~lee~wg~hl~~~~-q~daainhfiea~~~~kaieaai~akew~kai~ildniqdqk~  763 (1636)
T KOG3616|consen  685 KKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIG-QLDAAINHFIEANCLIKAIEAAIGAKEWKKAISILDNIQDQKT  763 (1636)
T ss_pred             HcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHH-hHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHhHHHHhhhhcc
Confidence            22222233322211                011111 0000        0111123444556788888888888776532


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHH-HH
Q 006615          204 IPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMR-VA  282 (638)
Q Consensus       204 ~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~-~l  282 (638)
                        -..-|..+...|+..|+++.|+++|-+.-         .++.-|..|.+.|+++.|.++-.+.  .|.......| .-
T Consensus       764 --~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~--~~~e~t~~~yiak  830 (1636)
T KOG3616|consen  764 --ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEEC--HGPEATISLYIAK  830 (1636)
T ss_pred             --ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHh--cCchhHHHHHHHh
Confidence              23457778889999999999999987543         2677789999999999999987665  3333333444 44


Q ss_pred             HHHHHHcCChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHH
Q 006615          283 LERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVS  362 (638)
Q Consensus       283 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (638)
                      ..-+-+.|++.+|.+++-.+...                                                         
T Consensus       831 aedldehgkf~eaeqlyiti~~p---------------------------------------------------------  853 (1636)
T KOG3616|consen  831 AEDLDEHGKFAEAEQLYITIGEP---------------------------------------------------------  853 (1636)
T ss_pred             HHhHHhhcchhhhhheeEEccCc---------------------------------------------------------
Confidence            56678888988888877544211                                                         


Q ss_pred             HhhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 006615          363 LLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHD--VYALEKMLTILARHGHVELVDRLIAKLRSDGMRLP  440 (638)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~  440 (638)
                                 -....++.+.|..+..+.+...-      .|+  ..|--.+..-+-..|++..|.+-|-+..       
T Consensus       854 -----------~~aiqmydk~~~~ddmirlv~k~------h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~-------  909 (1636)
T KOG3616|consen  854 -----------DKAIQMYDKHGLDDDMIRLVEKH------HGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG-------  909 (1636)
T ss_pred             -----------hHHHHHHHhhCcchHHHHHHHHh------ChhhhhHHHHHHHHHHHhccChhHHHHHHHhhh-------
Confidence                       11234555555555555555432      222  2234455666667777777776554432       


Q ss_pred             HHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHH-------------------HHHHHHHccCChHHHHH
Q 006615          441 FSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYS-------------------SLLRTLTKCKRDFDAIN  501 (638)
Q Consensus       441 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-------------------~li~~~~~~g~~~~A~~  501 (638)
                        -|.+-+++|-..+.+++|.++-+.   .++......+...|.                   .-|+--+..+.++-|..
T Consensus       910 --d~kaavnmyk~s~lw~dayriakt---egg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afd  984 (1636)
T KOG3616|consen  910 --DFKAAVNMYKASELWEDAYRIAKT---EGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFD  984 (1636)
T ss_pred             --hHHHHHHHhhhhhhHHHHHHHHhc---cccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHH
Confidence              244566777777777777766553   122122222223332                   12222333444444444


Q ss_pred             HHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHH-hhhCCCCCCHHHHHHHH
Q 006615          502 VLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY-LSNSNLMPDAATKELLK  580 (638)
Q Consensus       502 l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~-m~~~g~~p~~~~~~~li  580 (638)
                      +-+-..+.. .|.++  .-+..-+-..|++++|-+-+-+.++.+.  -..||..-+-.-... ..+.|-+|..     -+
T Consensus       985 lari~~k~k-~~~vh--lk~a~~ledegk~edaskhyveaiklnt--ynitwcqavpsrfd~e~ir~gnkpe~-----av 1054 (1636)
T KOG3616|consen  985 LARIAAKDK-MGEVH--LKLAMFLEDEGKFEDASKHYVEAIKLNT--YNITWCQAVPSRFDAEFIRAGNKPEE-----AV 1054 (1636)
T ss_pred             HHHHhhhcc-Cccch--hHHhhhhhhccchhhhhHhhHHHhhccc--ccchhhhcccchhhHHHHHcCCChHH-----HH
Confidence            433333221 22222  1223334567888888887777766431  112221111100001 4567777754     35


Q ss_pred             HHHhccCcHHHHHHHHHH
Q 006615          581 KSLWKEGRRKEAAAVEER  598 (638)
Q Consensus       581 ~~~~~~g~~~~A~~~~~~  598 (638)
                      ..+.+..+|+.|.++-+.
T Consensus      1055 ~mfi~dndwa~aervae~ 1072 (1636)
T KOG3616|consen 1055 EMFIHDNDWAAAERVAEA 1072 (1636)
T ss_pred             HHhhhcccHHHHHHHHHh
Confidence            678889999999988765

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.43  E-value=0.002  Score=73.72  Aligned_cols=209  Identities=13%  Similarity=0.071  Sum_probs=123.8

Q ss_pred             HHHHHhccCChhHHHHHHHHHhcC---CCCc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCC--CHHHHH
Q 006615          376 VCKVLRHFKSPETAWHFFCWVAYQ---PGYT--H-DVYALEKMLTILARHGHVELVDRLIAKLRSD--GMRL--PFSTIR  445 (638)
Q Consensus       376 ~~~~~~~~~~~~~a~~~~~~~~~~---~~~~--p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~--g~~~--~~~~~~  445 (638)
                      ++..+...|+++.|...+......   .+..  + ....+..+...+...|++++|...+.+....  ...+  ....+.
T Consensus       537 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~  616 (903)
T PRK04841        537 QSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLA  616 (903)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHH
Confidence            344445556666666655543221   1111  1 2233445556677789999999998876542  1112  223444


Q ss_pred             HHHHHHcccCCHHHHHHHHHhchhccCCCcch-hH-HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcch---hhHHH
Q 006615          446 LIIDFYGISKKADAALKAFHDDRTLCGPISKF-KL-MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDV---QTFSG  520 (638)
Q Consensus       446 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~---~t~~~  520 (638)
                      .+...+...|+.+.|...++............ .. ...-...+..+...|+.+.|.+.+............   ..+..
T Consensus       617 ~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~  696 (903)
T PRK04841        617 MLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRN  696 (903)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHH
Confidence            45567788999999999998875532211111 00 001111224455689999999998776542211111   11345


Q ss_pred             HHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHH
Q 006615          521 LMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPD-AATKELLKKSLWKEGRRKEAAAVEERC  599 (638)
Q Consensus       521 li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~  599 (638)
                      +..++...|+.++|...+++.....                   ...|..++ ..++..+..++.+.|+.++|.+.+.+.
T Consensus       697 ~a~~~~~~g~~~~A~~~l~~al~~~-------------------~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~A  757 (903)
T PRK04841        697 IARAQILLGQFDEAEIILEELNENA-------------------RSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEA  757 (903)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHH-------------------HHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            6678889999999999998877531                   01121222 345566777788889999998888888


Q ss_pred             HHcc
Q 006615          600 EKIN  603 (638)
Q Consensus       600 ~~~~  603 (638)
                      .+..
T Consensus       758 l~la  761 (903)
T PRK04841        758 LKLA  761 (903)
T ss_pred             HHHh
Confidence            7754

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.40  E-value=0.0033  Score=63.08  Aligned_cols=176  Identities=15%  Similarity=0.066  Sum_probs=115.5

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHH--HHHHH-
Q 006615          107 ALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIV--MSVYA-  183 (638)
Q Consensus       107 ~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~l--i~~~~-  183 (638)
                      +=+......+++++|.+..+++...+ +.+...+.+=+-+..+.+++++|+.+.+.-..      ..++|..  =.+|| 
T Consensus        17 t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fEKAYc~   89 (652)
T KOG2376|consen   17 TDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFEKAYCE   89 (652)
T ss_pred             HHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHHHHHHH
Confidence            34455567789999999999999865 56667788888889999999999966553321      2333433  45665 


Q ss_pred             -hcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCcc-CHhHHHHHHHHHHccCCHHH
Q 006615          184 -KTGKNFEAVETFRQVIDEGAIPN-SRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKR-TSKQYLILVEGFVGVERFDE  260 (638)
Q Consensus       184 -~~g~~~~A~~~~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~  260 (638)
                       +.+..++|+..++     |..++ ..+...=...+-+.|++++|.++|+.+.+++..- |...-..|+.+-.       
T Consensus        90 Yrlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a-------  157 (652)
T KOG2376|consen   90 YRLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA-------  157 (652)
T ss_pred             HHcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH-------
Confidence             5789999999988     33343 3356666677889999999999999997655321 1112222222111       


Q ss_pred             HHHHHHHHHhCCCCCCHHH---HHHHHHHHHcCChHHHHHHHHHh
Q 006615          261 AKSLLNEMRDDGKFPGRAM---RVALERMQEMGFIQGANEFLREM  302 (638)
Q Consensus       261 A~~l~~~m~~~g~~p~~~~---~~ll~~~~~~g~~~~a~~~~~~~  302 (638)
                      +... ..+......|+..+   |+.--.+...|++.+|+++++..
T Consensus       158 ~l~~-~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA  201 (652)
T KOG2376|consen  158 ALQV-QLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKA  201 (652)
T ss_pred             hhhH-HHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence            1111 13444455554332   34445667899999999999876

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.34  E-value=9.5e-05  Score=73.51  Aligned_cols=228  Identities=14%  Similarity=0.035  Sum_probs=141.6

Q ss_pred             HHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHcCChHH
Q 006615          217 LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR--AMRVALERMQEMGFIQG  294 (638)
Q Consensus       217 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~~~~ll~~~~~~g~~~~  294 (638)
                      +.+.|++.+|.-.|+...+.. +-+...|--|-.....+++-..|+..+++..+.  .|+.  +...+-..|...|.-..
T Consensus       295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--dP~NleaLmaLAVSytNeg~q~~  371 (579)
T KOG1125|consen  295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLEL--DPTNLEALMALAVSYTNEGLQNQ  371 (579)
T ss_pred             HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--CCccHHHHHHHHHHHhhhhhHHH
Confidence            567899999999999877653 236788999999999999999999999888775  4554  44577788999999999


Q ss_pred             HHHHHHHhCcCccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchH
Q 006615          295 ANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTR  374 (638)
Q Consensus       295 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (638)
                      |.+.++................       + ++.....        +..                               
T Consensus       372 Al~~L~~Wi~~~p~y~~l~~a~-------~-~~~~~~~--------~s~-------------------------------  404 (579)
T KOG1125|consen  372 ALKMLDKWIRNKPKYVHLVSAG-------E-NEDFENT--------KSF-------------------------------  404 (579)
T ss_pred             HHHHHHHHHHhCccchhccccC-------c-cccccCC--------cCC-------------------------------
Confidence            9999887743322111110000       0 0000000        000                               


Q ss_pred             HHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHccc
Q 006615          375 LVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGIS  454 (638)
Q Consensus       375 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~  454 (638)
                            .....+....++|-.+..+.+..+|......|--.|--.|++++|.+.|+......+. |..+||.|...++..
T Consensus       405 ------~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~  477 (579)
T KOG1125|consen  405 ------LDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPN-DYLLWNRLGATLANG  477 (579)
T ss_pred             ------CCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCC
Confidence                  0011222334455555555554555556666666666677777777777776655433 556677777777777


Q ss_pred             CCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHH
Q 006615          455 KKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEM  506 (638)
Q Consensus       455 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m  506 (638)
                      .+.++|+..|++..+.     +|+.+.++-.|.-.|...|.+++|.+.|-+.
T Consensus       478 ~~s~EAIsAY~rALqL-----qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A  524 (579)
T KOG1125|consen  478 NRSEEAISAYNRALQL-----QPGYVRVRYNLGISCMNLGAYKEAVKHLLEA  524 (579)
T ss_pred             cccHHHHHHHHHHHhc-----CCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence            7777777777766654     4444445555555666777777776666543

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.32  E-value=0.0013  Score=62.91  Aligned_cols=297  Identities=13%  Similarity=0.083  Sum_probs=172.2

Q ss_pred             HHHHHHHH--cCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHh-HHHHHHH
Q 006615           70 FIVTHALR--SAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVN-FMNLMQW  146 (638)
Q Consensus        70 ~~~~~~l~--~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~-~~~ll~~  146 (638)
                      ...+.+++  -.++...|...+-.+.....++-|......+.+.+...|+.++|...|++....+  |+..+ .-...-.
T Consensus       198 s~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~L  275 (564)
T KOG1174|consen  198 SKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVL  275 (564)
T ss_pred             HHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHH
Confidence            33444443  3344444444444444333466677778888888888898888888888776532  32221 1111223


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHH
Q 006615          147 YSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIP-NSRTYTVMIEHLVNLGKLDS  225 (638)
Q Consensus       147 ~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~  225 (638)
                      +.+.|+.+....+...+.... .-+...|-.-.......++++.|+.+-++..+.  .| +...|-.--..+...|+.++
T Consensus       276 L~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~--~~r~~~alilKG~lL~~~~R~~~  352 (564)
T KOG1174|consen  276 LGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDS--EPRNHEALILKGRLLIALERHTQ  352 (564)
T ss_pred             HHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc--CcccchHHHhccHHHHhccchHH
Confidence            356777877777777765542 223444555555566677888888888777763  23 33344333455677888888


Q ss_pred             HHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH---HHHcCChHHHHHHHHHh
Q 006615          226 ALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALER---MQEMGFIQGANEFLREM  302 (638)
Q Consensus       226 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~---~~~~g~~~~a~~~~~~~  302 (638)
                      |.--|+...... +-+..+|.-|+..|...|++.+|.-+-+..... +..+..+.+++.+   +.....-++|..+++.-
T Consensus       353 A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~  430 (564)
T KOG1174|consen  353 AVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKS  430 (564)
T ss_pred             HHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhh
Confidence            888888766432 236788889999999989888887766554321 1111112222211   11122234455555443


Q ss_pred             CcCccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhc
Q 006615          303 LPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRH  382 (638)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (638)
                      .+                                                            .++++......++.++..
T Consensus       431 L~------------------------------------------------------------~~P~Y~~AV~~~AEL~~~  450 (564)
T KOG1174|consen  431 LK------------------------------------------------------------INPIYTPAVNLIAELCQV  450 (564)
T ss_pred             hc------------------------------------------------------------cCCccHHHHHHHHHHHHh
Confidence            21                                                            122223333445566666


Q ss_pred             cCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 006615          383 FKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDG  436 (638)
Q Consensus       383 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g  436 (638)
                      .|..+.++.+++....   ..||....+.+-+.+...+.+.+|.+.|......+
T Consensus       451 Eg~~~D~i~LLe~~L~---~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d  501 (564)
T KOG1174|consen  451 EGPTKDIIKLLEKHLI---IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD  501 (564)
T ss_pred             hCccchHHHHHHHHHh---hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence            6677777766665542   24566666777777777777777777766665543

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.32  E-value=0.00014  Score=72.37  Aligned_cols=227  Identities=15%  Similarity=0.071  Sum_probs=175.0

Q ss_pred             CCCHHHHHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHH
Q 006615           66 LLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQ  145 (638)
Q Consensus        66 ~~~~~~~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~  145 (638)
                      ..+++..-..|.+.|.+.+|.-+|+...+..  +-+...|..|-..-...++-..|+..+.+..+.. +.+......|.-
T Consensus       285 ~pdPf~eG~~lm~nG~L~~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAV  361 (579)
T KOG1125|consen  285 HPDPFKEGCNLMKNGDLSEAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAV  361 (579)
T ss_pred             CCChHHHHHHHHhcCCchHHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHH
Confidence            4567777788889999999999999888664  2345578888888888888888999998888753 445666778888


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHH-----------HHHHhcCChHHHHHHHHHHHH-cCCCCCHHHHHHH
Q 006615          146 WYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVM-----------SVYAKTGKNFEAVETFRQVID-EGAIPNSRTYTVM  213 (638)
Q Consensus       146 ~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li-----------~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~ty~~l  213 (638)
                      .|...|.-..|+..++.-.....+     |-.+.           ..+.....+....++|-++.. .+.++|...+..|
T Consensus       362 SytNeg~q~~Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~L  436 (579)
T KOG1125|consen  362 SYTNEGLQNQALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGL  436 (579)
T ss_pred             HHhhhhhHHHHHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhh
Confidence            899999999999999877543210     11111           122333345566777777765 4555788888888


Q ss_pred             HHHHHHcCCHHHHHHHHHhcccCCCcc-CHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCh
Q 006615          214 IEHLVNLGKLDSALEVFSALPLMRIKR-TSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFI  292 (638)
Q Consensus       214 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~  292 (638)
                      --.|--.|++++|...|+.....  +| |...||-|-..++...+.++|+..|.+..+....--.+.|++..+|...|.+
T Consensus       437 GVLy~ls~efdraiDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~y  514 (579)
T KOG1125|consen  437 GVLYNLSGEFDRAVDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAY  514 (579)
T ss_pred             HHHHhcchHHHHHHHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhH
Confidence            88888999999999999998764  45 6788999999999999999999999999875433334568999999999999


Q ss_pred             HHHHHHHHHh
Q 006615          293 QGANEFLREM  302 (638)
Q Consensus       293 ~~a~~~~~~~  302 (638)
                      ++|...|-..
T Consensus       515 kEA~~hlL~A  524 (579)
T KOG1125|consen  515 KEAVKHLLEA  524 (579)
T ss_pred             HHHHHHHHHH
Confidence            9999877554

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.27  E-value=1.4e-06  Score=53.57  Aligned_cols=33  Identities=30%  Similarity=0.641  Sum_probs=23.7

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 006615          174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPN  206 (638)
Q Consensus       174 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~  206 (638)
                      +||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            577777777777777777777777777777766

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.23  E-value=5.4e-05  Score=77.17  Aligned_cols=139  Identities=16%  Similarity=0.068  Sum_probs=106.5

Q ss_pred             hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChH
Q 006615          418 RHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDF  497 (638)
Q Consensus       418 ~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  497 (638)
                      +.++++++.+.|+.-...+. .-..+|-.+-.+..+.+++..|.+.|......     .|+....||.+-.+|.+.|+..
T Consensus       497 ~~~~fs~~~~hle~sl~~np-lq~~~wf~~G~~ALqlek~q~av~aF~rcvtL-----~Pd~~eaWnNls~ayi~~~~k~  570 (777)
T KOG1128|consen  497 SNKDFSEADKHLERSLEINP-LQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL-----EPDNAEAWNNLSTAYIRLKKKK  570 (777)
T ss_pred             cchhHHHHHHHHHHHhhcCc-cchhHHHhccHHHHHHhhhHHHHHHHHHHhhc-----CCCchhhhhhhhHHHHHHhhhH
Confidence            36788888888887554432 24567777777888899999999999987754     6776789999999999999999


Q ss_pred             HHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCC-CCCCHhhHHHHHHHHHHH
Q 006615          498 DAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNG-VEPDAYMFKVLIQAYCKY  563 (638)
Q Consensus       498 ~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~-~~p~~~~~~~li~~~~~~  563 (638)
                      +|...+++..+.+ .-+...|...+....+.|.+++|++.+..+.... -.-|..+...++.+..+.
T Consensus       571 ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~~~~~~  636 (777)
T KOG1128|consen  571 RAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTVLEG  636 (777)
T ss_pred             HHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHHHHHhh
Confidence            9999999999987 4455667777777889999999999998777432 112555666666666555

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.22  E-value=2.2e-06  Score=52.61  Aligned_cols=33  Identities=27%  Similarity=0.492  Sum_probs=20.8

Q ss_pred             hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 006615          517 TFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPD  549 (638)
Q Consensus       517 t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~  549 (638)
                      +||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            566666666666666666666666666666655

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.20  E-value=0.0079  Score=59.79  Aligned_cols=104  Identities=10%  Similarity=0.006  Sum_probs=52.3

Q ss_pred             HHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHH
Q 006615           75 ALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLE  154 (638)
Q Consensus        75 ~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~  154 (638)
                      +....|+++.|+..|-......  +++...|..=..++++.|++++|..=-.+-++.. +.-...|..+..++.-.|+++
T Consensus        11 aa~s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-p~w~kgy~r~Gaa~~~lg~~~   87 (539)
T KOG0548|consen   11 AAFSSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN-PDWAKGYSRKGAALFGLGDYE   87 (539)
T ss_pred             hhcccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-CchhhHHHHhHHHHHhcccHH
Confidence            3445566666666666555432  2344455555566666666665554443333321 111233555555555556666


Q ss_pred             HHHHHHHHHHhcCCCCCHHhHHHHHHHH
Q 006615          155 LVLSTWNEYRQRAKLLSTESYNIVMSVY  182 (638)
Q Consensus       155 ~A~~l~~~m~~~~~~p~~~~~~~li~~~  182 (638)
                      +|+.-|.+=.+.. +.|...++-+..++
T Consensus        88 eA~~ay~~GL~~d-~~n~~L~~gl~~a~  114 (539)
T KOG0548|consen   88 EAILAYSEGLEKD-PSNKQLKTGLAQAY  114 (539)
T ss_pred             HHHHHHHHHhhcC-CchHHHHHhHHHhh
Confidence            6666666555443 22333344444443

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.20  E-value=2.4e-06  Score=52.02  Aligned_cols=33  Identities=27%  Similarity=0.543  Sum_probs=20.2

Q ss_pred             HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 006615          173 ESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIP  205 (638)
Q Consensus       173 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p  205 (638)
                      .+||++|.+|++.|+++.|.++|++|++.|++|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            356666666666666666666666666666555

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.14  E-value=3.8e-06  Score=51.10  Aligned_cols=32  Identities=31%  Similarity=0.499  Sum_probs=15.8

Q ss_pred             HHHHHHHHHHccCChHHHHHHHHHHHhCCCCc
Q 006615          482 LYSSLLRTLTKCKRDFDAINVLEEMIFSGIVP  513 (638)
Q Consensus       482 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p  513 (638)
                      +|+++|.+|++.|+.+.|.++|++|.+.|++|
T Consensus         3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            44555555555555555555555555444444

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.13  E-value=0.00044  Score=64.80  Aligned_cols=176  Identities=14%  Similarity=-0.020  Sum_probs=127.3

Q ss_pred             cCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-C-CHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHH
Q 006615          403 THDVYALEKMLTILARHGHVELVDRLIAKLRSDGMR-L-PFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLM  480 (638)
Q Consensus       403 ~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  480 (638)
                      ......+..+...+...|+++.|...|+++...... | ....+..+..+|...|++++|...++.+.+..+..+.-  .
T Consensus        30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~--~  107 (235)
T TIGR03302        30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA--D  107 (235)
T ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch--H
Confidence            335566777888899999999999999998775432 1 12456777888999999999999999988765432221  1


Q ss_pred             HHHHHHHHHHHcc--------CChHHHHHHHHHHHhCCCCcchh-hH-----------------HHHHHHHHccCCHHHH
Q 006615          481 LLYSSLLRTLTKC--------KRDFDAINVLEEMIFSGIVPDVQ-TF-----------------SGLMYHFALQGDEKIV  534 (638)
Q Consensus       481 ~~~~~li~~~~~~--------g~~~~A~~l~~~m~~~g~~p~~~-t~-----------------~~li~~~~~~g~~~~a  534 (638)
                      .++..+...+.+.        |+.++|.+.|+++.+.  .|+.. .+                 ..+...+.+.|++++|
T Consensus       108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A  185 (235)
T TIGR03302       108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAA  185 (235)
T ss_pred             HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHH
Confidence            3455555555544        7889999999999875  34432 11                 1344567788999999


Q ss_pred             HHHHHHHHhCCCCCCHhhHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcc
Q 006615          535 QKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKIN  603 (638)
Q Consensus       535 ~~l~~~m~~~~~~p~~~~~~~li~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~  603 (638)
                      ...++...+.  .|+.                   ......+..+..++.+.|++++|...++.+....
T Consensus       186 ~~~~~~al~~--~p~~-------------------~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~  233 (235)
T TIGR03302       186 INRFETVVEN--YPDT-------------------PATEEALARLVEAYLKLGLKDLAQDAAAVLGANY  233 (235)
T ss_pred             HHHHHHHHHH--CCCC-------------------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            9999998864  2331                   1235677889999999999999999998877643

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.12  E-value=0.00026  Score=66.36  Aligned_cols=183  Identities=15%  Similarity=0.110  Sum_probs=108.0

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-C-chHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CCH-HhHH
Q 006615          101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFL-N-VSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKL-LST-ESYN  176 (638)
Q Consensus       101 ~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~-~-~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~-p~~-~~~~  176 (638)
                      ....+......+...|+++.|...++++.+.... | ....+..+..++.+.|++++|...++++.+..-. |.. .++.
T Consensus        32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~  111 (235)
T TIGR03302        32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY  111 (235)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence            3445666666777788888888888877664311 1 1134566777778888888888888887765311 111 1344


Q ss_pred             HHHHHHHhc--------CChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHH
Q 006615          177 IVMSVYAKT--------GKNFEAVETFRQVIDEGAIPNS-RTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLI  247 (638)
Q Consensus       177 ~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~-~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~  247 (638)
                      .+..++.+.        |+.++|.+.|+...+.  .|+. ..+..+... ..   ....      .        ....-.
T Consensus       112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~-~~---~~~~------~--------~~~~~~  171 (235)
T TIGR03302       112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM-DY---LRNR------L--------AGKELY  171 (235)
T ss_pred             HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH-HH---HHHH------H--------HHHHHH
Confidence            444445443        5677777777777764  3432 222211110 00   0000      0        001123


Q ss_pred             HHHHHHccCCHHHHHHHHHHHHhCCC-CCC--HHHHHHHHHHHHcCChHHHHHHHHHhC
Q 006615          248 LVEGFVGVERFDEAKSLLNEMRDDGK-FPG--RAMRVALERMQEMGFIQGANEFLREML  303 (638)
Q Consensus       248 li~~~~~~g~~~~A~~l~~~m~~~g~-~p~--~~~~~ll~~~~~~g~~~~a~~~~~~~~  303 (638)
                      +...+.+.|++++|...+++...... .|.  ...+.+...+.+.|++++|...++.+.
T Consensus       172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~  230 (235)
T TIGR03302       172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLG  230 (235)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            55667788888888888888766532 232  244577788888888888888887764

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.12  E-value=0.0011  Score=72.58  Aligned_cols=228  Identities=9%  Similarity=0.075  Sum_probs=168.9

Q ss_pred             hhhccCCCCHHHHHHHHH---cCCChhHHHHHHHHHHcCCCCCCChh---HHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 006615           60 SLLNDRLLDPFIVTHALR---SAPNADSALSIMEALKSNPNFSHNQS---TLHALATVLAKSQRNHELKTLIGDISSSKF  133 (638)
Q Consensus        60 ~~~~~~~~~~~~~~~~l~---~~~~~~~Al~~~~~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~l~~~~~~~~~  133 (638)
                      .++...+.+...+++-.+   ..++.+.|.++++++...=+++-...   .|-+++...-..|.-+...++|++..+.. 
T Consensus      1449 rlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc- 1527 (1710)
T KOG1070|consen 1449 RLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC- 1527 (1710)
T ss_pred             HHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-
Confidence            333444555555555443   66889999999999885433433332   56666666677788888899999988742 


Q ss_pred             CCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---HHHH
Q 006615          134 LNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPN---SRTY  210 (638)
Q Consensus       134 ~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~ty  210 (638)
                       ..-.+|..|...|.+.+.+++|-++++.|.++ ..-....|...+..+.+..+-+.|.+++.+..+.  -|-   ....
T Consensus      1528 -d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~I 1603 (1710)
T KOG1070|consen 1528 -DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFI 1603 (1710)
T ss_pred             -chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHH
Confidence             23445889999999999999999999999987 3356788999999999999999999999998874  343   2222


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHH-
Q 006615          211 TVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRA--MRVALERMQ-  287 (638)
Q Consensus       211 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--~~~ll~~~~-  287 (638)
                      .-.+..-.+.|+.+.+..+|+.....- +.-...|+..|+.-.+.|+.+.+..+|++....++.|-..  .|..-..|. 
T Consensus      1604 skfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk 1682 (1710)
T KOG1070|consen 1604 SKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEK 1682 (1710)
T ss_pred             HHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHH
Confidence            333444567899999999999887642 3356789999999999999999999999999999988653  343333343 


Q ss_pred             HcCChH
Q 006615          288 EMGFIQ  293 (638)
Q Consensus       288 ~~g~~~  293 (638)
                      +.|+-+
T Consensus      1683 ~~Gde~ 1688 (1710)
T KOG1070|consen 1683 SHGDEK 1688 (1710)
T ss_pred             hcCchh
Confidence            345433

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.10  E-value=0.0007  Score=60.93  Aligned_cols=158  Identities=16%  Similarity=0.095  Sum_probs=123.7

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhc
Q 006615          106 HALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKT  185 (638)
Q Consensus       106 ~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~  185 (638)
                      ..+-..+.-.|+-+....+....... .+.|....+.+.....+.|++..|...|.+..... ++|...||.+--+|-+.
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~  147 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL  147 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence            45556666677777776666654432 24455566678888899999999999999998775 78899999999999999


Q ss_pred             CChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHH
Q 006615          186 GKNFEAVETFRQVIDEGAIP-NSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSL  264 (638)
Q Consensus       186 g~~~~A~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l  264 (638)
                      |++++|..-|.+..+.  .| +...+|.|.-.+.-.|+.+.|..++......+ ..|..+-..|..+....|++++|..+
T Consensus       148 Gr~~~Ar~ay~qAl~L--~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i  224 (257)
T COG5010         148 GRFDEARRAYRQALEL--APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDI  224 (257)
T ss_pred             cChhHHHHHHHHHHHh--ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhh
Confidence            9999999999998884  44 45667778888888899999999998877654 33677777888899999999999887


Q ss_pred             HHHH
Q 006615          265 LNEM  268 (638)
Q Consensus       265 ~~~m  268 (638)
                      ...-
T Consensus       225 ~~~e  228 (257)
T COG5010         225 AVQE  228 (257)
T ss_pred             cccc
Confidence            6654

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.10  E-value=0.00028  Score=72.16  Aligned_cols=214  Identities=13%  Similarity=0.041  Sum_probs=170.5

Q ss_pred             HHHHHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHH
Q 006615           69 PFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYS  148 (638)
Q Consensus        69 ~~~~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~  148 (638)
                      ...+...+.+.|-..+|+.+|+...          .|.-+|-+|+..|....|..+..+-.+  -+|+...|..+.+...
T Consensus       401 q~~laell~slGitksAl~I~Erle----------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~  468 (777)
T KOG1128|consen  401 QRLLAELLLSLGITKSALVIFERLE----------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLH  468 (777)
T ss_pred             HHHHHHHHHHcchHHHHHHHHHhHH----------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhcc
Confidence            3456788889999999999999875          566788889999999999998887777  3688888888888777


Q ss_pred             hcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 006615          149 TSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALE  228 (638)
Q Consensus       149 ~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~  228 (638)
                      ..--+++|.++++....+.    -..++.   .....++++++.+.|+.-.+... .-..||-..-.+..+.+++..|.+
T Consensus       469 d~s~yEkawElsn~~sarA----~r~~~~---~~~~~~~fs~~~~hle~sl~~np-lq~~~wf~~G~~ALqlek~q~av~  540 (777)
T KOG1128|consen  469 DPSLYEKAWELSNYISARA----QRSLAL---LILSNKDFSEADKHLERSLEINP-LQLGTWFGLGCAALQLEKEQAAVK  540 (777)
T ss_pred             ChHHHHHHHHHhhhhhHHH----HHhhcc---ccccchhHHHHHHHHHHHhhcCc-cchhHHHhccHHHHHHhhhHHHHH
Confidence            7777888888888765441    112222   23347899999999998777421 245677777777788999999999


Q ss_pred             HHHhcccCCCccC-HhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHhCc
Q 006615          229 VFSALPLMRIKRT-SKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLP  304 (638)
Q Consensus       229 ~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  304 (638)
                      .|..-...  .|| ...||.+-.+|.+.++-.+|...+.+..+.+-.+...+-+-+....+-|.+++|.+.+.++..
T Consensus       541 aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~  615 (777)
T KOG1128|consen  541 AFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD  615 (777)
T ss_pred             HHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence            99887753  564 678999999999999999999999999999888888876767778899999999999998854

>PLN02789 farnesyltranstransferase

Probab=98.10  E-value=0.0028  Score=61.56  Aligned_cols=223  Identities=14%  Similarity=0.012  Sum_probs=153.4

Q ss_pred             HHHHcCCChhHHHHHHHHHHcCCCCCCC-hhHHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcC
Q 006615           74 HALRSAPNADSALSIMEALKSNPNFSHN-QSTLHALATVLAKSQ-RNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSG  151 (638)
Q Consensus        74 ~~l~~~~~~~~Al~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~-~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g  151 (638)
                      ..+...+..++|+.+...+.+..   |+ ..+|+.--.++...+ .++++...++.+.+.. +.+..+|+..-..+.+.|
T Consensus        45 a~l~~~e~serAL~lt~~aI~ln---P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~  120 (320)
T PLN02789         45 AVYASDERSPRALDLTADVIRLN---PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLG  120 (320)
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHC---chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcC
Confidence            44566788999999999998653   33 235555555566666 5799999999988754 344455776555556666


Q ss_pred             CH--HHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc---CCH---
Q 006615          152 DL--ELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL---GKL---  223 (638)
Q Consensus       152 ~~--~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~---g~~---  223 (638)
                      +.  ++++.+++.+.+.+ +-|..+|+...-++.+.|+++++++.++++.+.+.. |...|+.....+.+.   |..   
T Consensus       121 ~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~  198 (320)
T PLN02789        121 PDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAM  198 (320)
T ss_pred             chhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccccccc
Confidence            53  67899999998876 557889999999999999999999999999997654 667777665555444   222   


Q ss_pred             -HHHHHHHHhcccCCCccCHhHHHHHHHHHHcc----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC--------
Q 006615          224 -DSALEVFSALPLMRIKRTSKQYLILVEGFVGV----ERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMG--------  290 (638)
Q Consensus       224 -~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~----g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g--------  290 (638)
                       +++.+...++.... +-|...|+-+...+...    +...+|.+.+.+..+.++......--++..|+...        
T Consensus       199 ~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~  277 (320)
T PLN02789        199 RDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRD  277 (320)
T ss_pred             HHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhh
Confidence             45666665555432 23678898888888773    34567888888876644332223335556665432        


Q ss_pred             ----------ChHHHHHHHHHhC
Q 006615          291 ----------FIQGANEFLREML  303 (638)
Q Consensus       291 ----------~~~~a~~~~~~~~  303 (638)
                                ..++|.+++..+.
T Consensus       278 ~~~~~~~~~~~~~~a~~~~~~l~  300 (320)
T PLN02789        278 TVDTLAEELSDSTLAQAVCSELE  300 (320)
T ss_pred             hhhccccccccHHHHHHHHHHHH
Confidence                      2366888887773

>PLN02789 farnesyltranstransferase

Probab=98.08  E-value=0.0036  Score=60.78  Aligned_cols=133  Identities=8%  Similarity=0.011  Sum_probs=78.6

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-
Q 006615          145 QWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTG-KNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGK-  222 (638)
Q Consensus       145 ~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~-  222 (638)
                      ..+...++.++|+.+.+.+.+.+ +-+..+|+.--.++.+.| +++++++.++++.+...+ +..+|+.--..+.+.|+ 
T Consensus        45 a~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~  122 (320)
T PLN02789         45 AVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPD  122 (320)
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCch
Confidence            33444556666776666666654 223445555545555555 456777777776664332 33445443333344444 


Q ss_pred             -HHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHH
Q 006615          223 -LDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMR  280 (638)
Q Consensus       223 -~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~  280 (638)
                       .+++..+++++.+.. ..|..+|+...-++.+.|+++++++.++++.+.++....+++
T Consensus       123 ~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~  180 (320)
T PLN02789        123 AANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWN  180 (320)
T ss_pred             hhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHH
Confidence             255666666666543 236677777777777777788888888887777766666654

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=98.08  E-value=6.4e-05  Score=57.98  Aligned_cols=78  Identities=19%  Similarity=0.349  Sum_probs=62.3

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCC-CCCHHhHHHHHHHHHhcC--------ChHHHHHHHHHHHHcCCCCCHHHHHH
Q 006615          142 NLMQWYSTSGDLELVLSTWNEYRQRAK-LLSTESYNIVMSVYAKTG--------KNFEAVETFRQVIDEGAIPNSRTYTV  212 (638)
Q Consensus       142 ~ll~~~~~~g~~~~A~~l~~~m~~~~~-~p~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~p~~~ty~~  212 (638)
                      ..|.-+...+++...-.+|+.++..|+ .|++.+||.++.+.++..        ++-..+.+|++|...+++|+..||++
T Consensus        30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni  109 (120)
T PF08579_consen   30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI  109 (120)
T ss_pred             HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence            445555666899999999999999998 888999999998887743        23456788888988889999999998


Q ss_pred             HHHHHHH
Q 006615          213 MIEHLVN  219 (638)
Q Consensus       213 li~~~~~  219 (638)
                      ++..+.+
T Consensus       110 vl~~Llk  116 (120)
T PF08579_consen  110 VLGSLLK  116 (120)
T ss_pred             HHHHHHH
Confidence            8887654

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.07  E-value=0.002  Score=70.84  Aligned_cols=204  Identities=11%  Similarity=0.117  Sum_probs=155.4

Q ss_pred             CCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-H
Q 006615          134 LNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLL-----STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPN-S  207 (638)
Q Consensus       134 ~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~  207 (638)
                      +.+...|-..|....+.++.+.|.+++++.... +.+     -...|.++++.-...|.-+...++|++..+-   -| -
T Consensus      1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy---cd~~ 1530 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY---CDAY 1530 (1710)
T ss_pred             CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh---cchH
Confidence            455667888999999999999999999998754 212     1346888888888889889999999999884   23 3


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHH----HH
Q 006615          208 RTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRV----AL  283 (638)
Q Consensus       208 ~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~----ll  283 (638)
                      ..|..|...|.+.+..++|.++++.|.+. +.-...+|...+..+.+..+-+.|.+++.+..+.  .|......    ..
T Consensus      1531 ~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfA 1607 (1710)
T KOG1070|consen 1531 TVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFA 1607 (1710)
T ss_pred             HHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHH
Confidence            46778999999999999999999999863 2246678999999999999999999999988764  33322222    22


Q ss_pred             HHHHHcCChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHH
Q 006615          284 ERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSL  363 (638)
Q Consensus       284 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (638)
                      ..-.+.|+.+.+..+|+....                                                           
T Consensus      1608 qLEFk~GDaeRGRtlfEgll~----------------------------------------------------------- 1628 (1710)
T KOG1070|consen 1608 QLEFKYGDAERGRTLFEGLLS----------------------------------------------------------- 1628 (1710)
T ss_pred             HHHhhcCCchhhHHHHHHHHh-----------------------------------------------------------
Confidence            333566777776666665521                                                           


Q ss_pred             hhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 006615          364 LADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLP  440 (638)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~  440 (638)
                                                         ..  +--...|+..|+.=.+.|+.+.++.+|++....++.|-
T Consensus      1629 -----------------------------------ay--PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1629 -----------------------------------AY--PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred             -----------------------------------hC--ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence                                               11  22345688999999999999999999999999888764

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.02  E-value=0.0046  Score=56.57  Aligned_cols=291  Identities=12%  Similarity=0.122  Sum_probs=158.2

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHH-HHHHH
Q 006615          175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLIL-VEGFV  253 (638)
Q Consensus       175 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-i~~~~  253 (638)
                      +.+.+.-+.+..++++|++++..-.+...+ +....+.|-.+|-...++..|-..++++...  .|...-|... ...+.
T Consensus        13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY   89 (459)
T KOG4340|consen   13 FTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY   89 (459)
T ss_pred             hHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence            444555555555666666665555443211 4455555555555666666666666665542  3433333321 23445


Q ss_pred             ccCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHH--HHHcCChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCC
Q 006615          254 GVERFDEAKSLLNEMRDDGKFPGRAMRV-ALER--MQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNS  330 (638)
Q Consensus       254 ~~g~~~~A~~l~~~m~~~g~~p~~~~~~-ll~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (638)
                      +.+.+..|+++...|.+.   |....-. -+.+  ..+.+++..+..++++...++-..                     
T Consensus        90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad---------------------  145 (459)
T KOG4340|consen   90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEAD---------------------  145 (459)
T ss_pred             HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccc---------------------
Confidence            556666666666665442   1111100 0111  223455555555555543211000                     


Q ss_pred             CccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHH
Q 006615          331 GVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALE  410 (638)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~  410 (638)
                                                               ..+-.+-.+-+.|+++.|.+-|.....-.|+.| ...||
T Consensus       146 -----------------------------------------~~in~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYn  183 (459)
T KOG4340|consen  146 -----------------------------------------GQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYN  183 (459)
T ss_pred             -----------------------------------------hhccchheeeccccHHHHHHHHHHHHhhcCCCc-hhHHH
Confidence                                                     000112233346888999999998888888876 44576


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHcCCCC-------------CHH--------HHHHHHHH-------HcccCCHHHHHH
Q 006615          411 KMLTILARHGHVELVDRLIAKLRSDGMRL-------------PFS--------TIRLIIDF-------YGISKKADAALK  462 (638)
Q Consensus       411 ~li~~~~~~g~~~~a~~l~~~m~~~g~~~-------------~~~--------~~~~li~~-------~~~~g~~~~A~~  462 (638)
                      .-+ +..+.|+++.|+++..+++++|++-             |..        .-+.++.+       +.+.|+.+.|.+
T Consensus       184 iAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~e  262 (459)
T KOG4340|consen  184 LAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQE  262 (459)
T ss_pred             HHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHH
Confidence            544 5567899999999999999887652             211        11334443       346778888888


Q ss_pred             HHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHH
Q 006615          463 AFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSM  540 (638)
Q Consensus       463 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~  540 (638)
                      .+-.|........+|   ++...+.-. -..+++.+..+-++-+.... +-...||..++--||+..-++.|-.++.+
T Consensus       263 aLtDmPPRaE~elDP---vTLHN~Al~-n~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~lAADvLAE  335 (459)
T KOG4340|consen  263 ALTDMPPRAEEELDP---VTLHNQALM-NMDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYFDLAADVLAE  335 (459)
T ss_pred             HhhcCCCcccccCCc---hhhhHHHHh-cccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence            887775443333333   233222111 12344444455455555442 23456888888888888877777777654

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=97.98  E-value=0.0009  Score=60.24  Aligned_cols=119  Identities=13%  Similarity=0.150  Sum_probs=73.9

Q ss_pred             cCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHH-HHHcCC--HHH
Q 006615          150 SGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIP-NSRTYTVMIEH-LVNLGK--LDS  225 (638)
Q Consensus       150 ~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~ty~~li~~-~~~~g~--~~~  225 (638)
                      .++.+++...++...+.+ +.|...|..+...|...|++++|...|++..+..  | +...+..+..+ +...|+  .++
T Consensus        52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~--P~~~~~~~~lA~aL~~~~g~~~~~~  128 (198)
T PRK10370         52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR--GENAELYAALATVLYYQAGQHMTPQ  128 (198)
T ss_pred             chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCCCcHH
Confidence            455566666666655554 4566667777777777777777777777666632  3 45555555554 345555  367


Q ss_pred             HHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 006615          226 ALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG  272 (638)
Q Consensus       226 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g  272 (638)
                      |.+++++..+.. .-+..++..+...+.+.|++++|...|+++.+..
T Consensus       129 A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~  174 (198)
T PRK10370        129 TREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDLN  174 (198)
T ss_pred             HHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            777777766543 2255666666677777777777777777765543

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=97.97  E-value=0.0019  Score=70.19  Aligned_cols=137  Identities=12%  Similarity=0.107  Sum_probs=76.3

Q ss_pred             HHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHH
Q 006615          443 TIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLM  522 (638)
Q Consensus       443 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li  522 (638)
                      .+..+..+|-+.|+.++|..+|+++.+.     +|+.+.+.|.+...|... ++++|++++.+....             
T Consensus       118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~-----D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~-------------  178 (906)
T PRK14720        118 ALRTLAEAYAKLNENKKLKGVWERLVKA-----DRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR-------------  178 (906)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhc-----CcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH-------------
Confidence            4445555555566666666666655543     233345566666666666 666666666555442             


Q ss_pred             HHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHc
Q 006615          523 YHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKI  602 (638)
Q Consensus       523 ~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~  602 (638)
                        |...+++.++.++|.++....  |+...+  ++.-..+.....|..--..++.-|...|-...+|+++.++++.+.+.
T Consensus       179 --~i~~kq~~~~~e~W~k~~~~~--~~d~d~--f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~  252 (906)
T PRK14720        179 --FIKKKQYVGIEEIWSKLVHYN--SDDFDF--FLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEH  252 (906)
T ss_pred             --HHhhhcchHHHHHHHHHHhcC--cccchH--HHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhc
Confidence              444556666666666666532  222111  11111111122233444556667777777778888888888888776


Q ss_pred             cC
Q 006615          603 ND  604 (638)
Q Consensus       603 ~~  604 (638)
                      ..
T Consensus       253 ~~  254 (906)
T PRK14720        253 DN  254 (906)
T ss_pred             CC
Confidence            65

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=97.96  E-value=0.0022  Score=57.78  Aligned_cols=159  Identities=14%  Similarity=0.054  Sum_probs=130.3

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 006615          141 MNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL  220 (638)
Q Consensus       141 ~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~  220 (638)
                      ..+-..+.-.|+-+....+....... .+.|....+.++....+.|++..|...|.+.... -++|..+|+.+--+|.+.
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~  147 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQL  147 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHc
Confidence            45667777788888888877775543 2445667778999999999999999999999874 356899999999999999


Q ss_pred             CCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHH
Q 006615          221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLR  300 (638)
Q Consensus       221 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~  300 (638)
                      |+.+.|..-|.+..+... -+...+|.|.-.|.-.|+.+.|..++......+.....+--++.......|++++|.++..
T Consensus       148 Gr~~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~  226 (257)
T COG5010         148 GRFDEARRAYRQALELAP-NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV  226 (257)
T ss_pred             cChhHHHHHHHHHHHhcc-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence            999999999998877432 2566788888899999999999999999988776665555688888899999999999875


Q ss_pred             Hh
Q 006615          301 EM  302 (638)
Q Consensus       301 ~~  302 (638)
                      .-
T Consensus       227 ~e  228 (257)
T COG5010         227 QE  228 (257)
T ss_pred             cc
Confidence            43

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.96  E-value=0.00013  Score=72.41  Aligned_cols=127  Identities=15%  Similarity=0.130  Sum_probs=105.7

Q ss_pred             cCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcc
Q 006615          435 DGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPD  514 (638)
Q Consensus       435 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~  514 (638)
                      .+...+......+++.+....+++.+..++.+.+.........+  .+..++|..|.+.|..++++++++.=...|+-||
T Consensus        60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~--~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D  137 (429)
T PF10037_consen   60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLP--STHHALVRQCLELGAEDELLELLKNRLQYGIFPD  137 (429)
T ss_pred             cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccC--ccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCC
Confidence            34455777788888888888889999988888766533222222  3567999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHH
Q 006615          515 VQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY  563 (638)
Q Consensus       515 ~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~  563 (638)
                      ..|+|.||..+.+.|++..|.++..+|...+...+..|+..-+.+|.+.
T Consensus       138 ~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  138 NFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             hhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            9999999999999999999999999999888888888888888777665

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=97.96  E-value=0.0024  Score=69.32  Aligned_cols=166  Identities=10%  Similarity=0.024  Sum_probs=99.6

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchH-hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHH
Q 006615          101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSV-NFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVM  179 (638)
Q Consensus       101 ~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~-~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li  179 (638)
                      +...+..|+..+...+++++|.++.+...+.  .|+.. .|-.+.-.+.+.++.+++..+                 .++
T Consensus        30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l   90 (906)
T PRK14720         30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NLI   90 (906)
T ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hhh
Confidence            4456788888888889999999988866553  23332 233333466677776555544                 233


Q ss_pred             HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHH
Q 006615          180 SVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD  259 (638)
Q Consensus       180 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~  259 (638)
                      +......++.-+..++..|...  .-+...+-++..+|-+.|+.++|..+++++.+.. .-|..+.|.+...|+.. +++
T Consensus        91 ~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~  166 (906)
T PRK14720         91 DSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKE  166 (906)
T ss_pred             hhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHH
Confidence            3333333343333333333332  1234466667777777777777777777777654 33566677777777777 777


Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHhC
Q 006615          260 EAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREML  303 (638)
Q Consensus       260 ~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~~  303 (638)
                      +|.+++.+....              +....++..+.++|..+.
T Consensus       167 KA~~m~~KAV~~--------------~i~~kq~~~~~e~W~k~~  196 (906)
T PRK14720        167 KAITYLKKAIYR--------------FIKKKQYVGIEEIWSKLV  196 (906)
T ss_pred             HHHHHHHHHHHH--------------HHhhhcchHHHHHHHHHH
Confidence            777777766432              445556666666666654

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.94  E-value=1.1e-05  Score=47.74  Aligned_cols=29  Identities=38%  Similarity=0.635  Sum_probs=16.1

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 006615          174 SYNIVMSVYAKTGKNFEAVETFRQVIDEG  202 (638)
Q Consensus       174 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g  202 (638)
                      +||++|++|++.|++++|.++|++|.+.|
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g   30 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRERG   30 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence            45555555555555555555555555544

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=97.90  E-value=0.0025  Score=57.40  Aligned_cols=157  Identities=12%  Similarity=0.110  Sum_probs=112.1

Q ss_pred             HHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcC
Q 006615           72 VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSG  151 (638)
Q Consensus        72 ~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g  151 (638)
                      .+..|...|+++......+.+....  .    .       +...++.+++...++...+.. +.+...|..|...|...|
T Consensus        22 ~~~~Y~~~g~~~~v~~~~~~~~~~~--~----~-------~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g   87 (198)
T PRK10370         22 CVGSYLLSPKWQAVRAEYQRLADPL--H----Q-------FASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRN   87 (198)
T ss_pred             HHHHHHHcchHHHHHHHHHHHhCcc--c----c-------ccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCC
Confidence            3456778888877654443322110  0    1       112455666666666666543 567778889999999999


Q ss_pred             CHHHHHHHHHHHHhcCCCCCHHhHHHHHHHH-HhcCC--hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 006615          152 DLELVLSTWNEYRQRAKLLSTESYNIVMSVY-AKTGK--NFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALE  228 (638)
Q Consensus       152 ~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~-~~~g~--~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~  228 (638)
                      ++++|...|++....+ +.+...+..+..++ ...|+  .++|.+++++..+.+.. +..++..+...+.+.|++++|..
T Consensus        88 ~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~  165 (198)
T PRK10370         88 DYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIE  165 (198)
T ss_pred             CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHH
Confidence            9999999999988875 45677888887764 66676  58999999999986433 67788888888999999999999


Q ss_pred             HHHhcccCCCccCHhHH
Q 006615          229 VFSALPLMRIKRTSKQY  245 (638)
Q Consensus       229 ~~~~m~~~g~~p~~~~~  245 (638)
                      .|+++.+.. .|+..-+
T Consensus       166 ~~~~aL~l~-~~~~~r~  181 (198)
T PRK10370        166 LWQKVLDLN-SPRVNRT  181 (198)
T ss_pred             HHHHHHhhC-CCCccHH
Confidence            999987653 4454433

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=97.90  E-value=0.0011  Score=71.21  Aligned_cols=131  Identities=11%  Similarity=0.088  Sum_probs=65.6

Q ss_pred             CchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHH
Q 006615          135 NVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIP-NSRTYTVM  213 (638)
Q Consensus       135 ~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~ty~~l  213 (638)
                      .++..+..|.....+.|.+++|..+++...+.. +-+......+..++.+.+++++|+..+++....  .| +......+
T Consensus        84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~  160 (694)
T PRK15179         84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLE  160 (694)
T ss_pred             ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHH
Confidence            334445555555555555555555555555542 223334444555555555555555555555553  23 23333444


Q ss_pred             HHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHH
Q 006615          214 IEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMR  269 (638)
Q Consensus       214 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~  269 (638)
                      -.++.+.|++++|..+|++....+ .-+..++..+-.++-+.|+.++|...|++..
T Consensus       161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~  215 (694)
T PRK15179        161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGL  215 (694)
T ss_pred             HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            444555555555555555555421 1124455555555555555555555555553

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.90  E-value=1.6e-05  Score=47.12  Aligned_cols=29  Identities=21%  Similarity=0.445  Sum_probs=15.3

Q ss_pred             hHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 006615          517 TFSGLMYHFALQGDEKIVQKLFSMVRQNG  545 (638)
Q Consensus       517 t~~~li~~~~~~g~~~~a~~l~~~m~~~~  545 (638)
                      |||++|++|++.|++++|.++|++|.+.|
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g   30 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRERG   30 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence            45555555555555555555555555444

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.89  E-value=0.034  Score=55.51  Aligned_cols=196  Identities=13%  Similarity=0.033  Sum_probs=119.1

Q ss_pred             HHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH-------HHH
Q 006615          376 VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIR-------LII  448 (638)
Q Consensus       376 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~-------~li  448 (638)
                      ++...-...+++.|.+.+.......   -+..-++..-.+|...|.+...........+.|.. ...-|+       .+.
T Consensus       230 lgnaaykkk~f~~a~q~y~~a~el~---~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g  305 (539)
T KOG0548|consen  230 LGNAAYKKKDFETAIQHYAKALELA---TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLG  305 (539)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHhHh---hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhh
Confidence            4555556677888888887765333   35555777778889999988888777777766643 222222       233


Q ss_pred             HHHcccCCHHHHHHHHHhchhccCCCcchhHH------------------------HHHHHHHHHHHccCChHHHHHHHH
Q 006615          449 DFYGISKKADAALKAFHDDRTLCGPISKFKLM------------------------LLYSSLLRTLTKCKRDFDAINVLE  504 (638)
Q Consensus       449 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~------------------------~~~~~li~~~~~~g~~~~A~~l~~  504 (638)
                      .+|.+.++++.|...|++....+.   .|+..                        .-.-.=...+.+.|++..|...|.
T Consensus       306 ~a~~k~~~~~~ai~~~~kaLte~R---t~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yt  382 (539)
T KOG0548|consen  306 NAYTKREDYEGAIKYYQKALTEHR---TPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYT  382 (539)
T ss_pred             hhhhhHHhHHHHHHHHHHHhhhhc---CHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence            467778889999999988655432   22210                        011112445566677777777777


Q ss_pred             HHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHh
Q 006615          505 EMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLW  584 (638)
Q Consensus       505 ~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~m~~~g~~p~~~~~~~li~~~~  584 (638)
                      ++++.. +-|...|..-.-+|.+.|.+..|+.=-+..++.  .|+.                      ...|..=..++.
T Consensus       383 eAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~----------------------~kgy~RKg~al~  437 (539)
T KOG0548|consen  383 EAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNF----------------------IKAYLRKGAALR  437 (539)
T ss_pred             HHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchH----------------------HHHHHHHHHHHH
Confidence            777764 235666777777777777777776665555543  2221                      222222233334


Q ss_pred             ccCcHHHHHHHHHHHHHcc
Q 006615          585 KEGRRKEAAAVEERCEKIN  603 (638)
Q Consensus       585 ~~g~~~~A~~~~~~~~~~~  603 (638)
                      -..+|+.|.+.|++..+.+
T Consensus       438 ~mk~ydkAleay~eale~d  456 (539)
T KOG0548|consen  438 AMKEYDKALEAYQEALELD  456 (539)
T ss_pred             HHHHHHHHHHHHHHHHhcC
Confidence            4456777777777766655

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.89  E-value=0.0062  Score=64.89  Aligned_cols=179  Identities=15%  Similarity=0.087  Sum_probs=119.3

Q ss_pred             hhHHHHHHHHHHcCC-CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHH
Q 006615           82 ADSALSIMEALKSNP-NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW  160 (638)
Q Consensus        82 ~~~Al~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~  160 (638)
                      ...|+..|-...+.. .+   ...|..+-..|+...+...|.+.|+...+-+ ..+...+..+.+.|++..+++.|..+.
T Consensus       474 ~~~al~ali~alrld~~~---apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~  549 (1238)
T KOG1127|consen  474 SALALHALIRALRLDVSL---APAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEIC  549 (1238)
T ss_pred             HHHHHHHHHHHHhcccch---hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHH
Confidence            555665555444332 12   2267777777877778888888888877643 345556778889999999999998884


Q ss_pred             HHHHhcCCCCCHHhHHHH--HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCC
Q 006615          161 NEYRQRAKLLSTESYNIV--MSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRI  238 (638)
Q Consensus       161 ~~m~~~~~~p~~~~~~~l--i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~  238 (638)
                      -.-.+.. +.-...+|.+  --.|.+.++...|..-|+...+...+ |...|..+..+|.++|++..|.++|.+....  
T Consensus       550 l~~~qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--  625 (1238)
T KOG1127|consen  550 LRAAQKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL--  625 (1238)
T ss_pred             HHHhhhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--
Confidence            3333322 1112233333  33467788888888888888774322 6778888999999999999999999877653  


Q ss_pred             ccCHhHHHH--HHHHHHccCCHHHHHHHHHHHH
Q 006615          239 KRTSKQYLI--LVEGFVGVERFDEAKSLLNEMR  269 (638)
Q Consensus       239 ~p~~~~~~~--li~~~~~~g~~~~A~~l~~~m~  269 (638)
                      .|+. +|..  .....+..|.+.+|...+....
T Consensus       626 rP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii  657 (1238)
T KOG1127|consen  626 RPLS-KYGRFKEAVMECDNGKYKEALDALGLII  657 (1238)
T ss_pred             CcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            3433 2222  2234566788888888877664

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=97.88  E-value=0.00049  Score=58.45  Aligned_cols=94  Identities=10%  Similarity=-0.042  Sum_probs=56.7

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 006615          140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVN  219 (638)
Q Consensus       140 ~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~  219 (638)
                      +..+...+.+.|++++|...|+.....+ +.+...|..+..++.+.|++++|...|++..+.. +.+..++..+..++..
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~  104 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM  104 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence            3344555566666666666666666554 3455666666666666666666666666666532 1255556666666666


Q ss_pred             cCCHHHHHHHHHhccc
Q 006615          220 LGKLDSALEVFSALPL  235 (638)
Q Consensus       220 ~g~~~~A~~~~~~m~~  235 (638)
                      .|+.++|.+.|+...+
T Consensus       105 ~g~~~eAi~~~~~Al~  120 (144)
T PRK15359        105 MGEPGLAREAFQTAIK  120 (144)
T ss_pred             cCCHHHHHHHHHHHHH
Confidence            6666666666666554

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.87  E-value=0.00031  Score=54.34  Aligned_cols=82  Identities=10%  Similarity=0.166  Sum_probs=68.2

Q ss_pred             HHHHHHHHHHHccCChHHHHHHHHHHHhCCC-CcchhhHHHHHHHHHccC--------CHHHHHHHHHHHHhCCCCCCHh
Q 006615          481 LLYSSLLRTLTKCKRDFDAINVLEEMIFSGI-VPDVQTFSGLMYHFALQG--------DEKIVQKLFSMVRQNGVEPDAY  551 (638)
Q Consensus       481 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~li~~~~~~g--------~~~~a~~l~~~m~~~~~~p~~~  551 (638)
                      .+-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++..        ++-+.+.+++.|...+++|+..
T Consensus        26 ~t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~e  105 (120)
T PF08579_consen   26 ETQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDE  105 (120)
T ss_pred             HHHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHH
Confidence            3445567777777999999999999999999 999999999999887653        2345677889999999999999


Q ss_pred             hHHHHHHHHHH
Q 006615          552 MFKVLIQAYCK  562 (638)
Q Consensus       552 ~~~~li~~~~~  562 (638)
                      ||+.++..+.+
T Consensus       106 tYnivl~~Llk  116 (120)
T PF08579_consen  106 TYNIVLGSLLK  116 (120)
T ss_pred             HHHHHHHHHHH
Confidence            99998887765

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.86  E-value=0.00019  Score=71.18  Aligned_cols=121  Identities=12%  Similarity=0.115  Sum_probs=84.1

Q ss_pred             CChhHHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHH
Q 006615          100 HNQSTLHALATVLAKSQRNHELKTLIGDISSS--KFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNI  177 (638)
Q Consensus       100 ~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~--~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~  177 (638)
                      .+......++..+....+++.+..++-+.+..  .......|.+++|+.|.+.|..+.++.+++.=...|+-||..++|.
T Consensus        64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~  143 (429)
T PF10037_consen   64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL  143 (429)
T ss_pred             CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence            34456666777776667777777777666643  2223334556777777777777777777777777777777777777


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 006615          178 VMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL  220 (638)
Q Consensus       178 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~  220 (638)
                      ||+.+.+.|++..|.++..+|...+...+..|+...+.+|.+.
T Consensus       144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            7777777777777777777777766666667776666666655

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=97.86  E-value=0.0021  Score=68.95  Aligned_cols=148  Identities=14%  Similarity=0.092  Sum_probs=103.4

Q ss_pred             CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHH
Q 006615           98 FSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNI  177 (638)
Q Consensus        98 ~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~  177 (638)
                      +..+...+-.|..+..+.|++++|..+++...+.. +.+......+...+.+.+++++|+..+++....+ +-+....+.
T Consensus        82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~  159 (694)
T PRK15179         82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILL  159 (694)
T ss_pred             ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHH
Confidence            44556677777788888888888888888877742 3344455667777888888888888888887765 334556666


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHH
Q 006615          178 VMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILV  249 (638)
Q Consensus       178 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li  249 (638)
                      +-.++.+.|++++|.++|++....+ .-+..++..+-..+-+.|+.++|...|+...+.- .+.+..|+.++
T Consensus       160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~  229 (694)
T PRK15179        160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL  229 (694)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH
Confidence            7777788888888888888888732 2246777777777888888888888888775421 23444444443

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.85  E-value=0.0094  Score=63.57  Aligned_cols=161  Identities=15%  Similarity=0.069  Sum_probs=120.8

Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH--HH
Q 006615          138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVM--IE  215 (638)
Q Consensus       138 ~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~l--i~  215 (638)
                      ..|..|...|+..-+...|.+.|+...+.+ ..|...+....+.|++..+++.|..+.-.--+.. +--...+|.+  --
T Consensus       493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka-~a~~~k~nW~~rG~  570 (1238)
T KOG1127|consen  493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKA-PAFACKENWVQRGP  570 (1238)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhc-hHHHHHhhhhhccc
Confidence            357888888888888999999999988876 4568889999999999999999999843333321 1122233333  33


Q ss_pred             HHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHcCChH
Q 006615          216 HLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM--RVALERMQEMGFIQ  293 (638)
Q Consensus       216 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~--~~ll~~~~~~g~~~  293 (638)
                      .|.+.++...|..-|+...... +.|...|..+..+|...|++..|.++|.+...  +.|+..+  |-.-..-+..|.+.
T Consensus       571 yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~s~y~~fk~A~~ecd~GkYk  647 (1238)
T KOG1127|consen  571 YYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPLSKYGRFKEAVMECDNGKYK  647 (1238)
T ss_pred             cccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcHhHHHHHHHHHHHHHhhhHH
Confidence            4677889999999998877643 34788999999999999999999999998865  4455433  33334457889999


Q ss_pred             HHHHHHHHhC
Q 006615          294 GANEFLREML  303 (638)
Q Consensus       294 ~a~~~~~~~~  303 (638)
                      ++...+..+.
T Consensus       648 eald~l~~ii  657 (1238)
T KOG1127|consen  648 EALDALGLII  657 (1238)
T ss_pred             HHHHHHHHHH
Confidence            9999887764

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=97.85  E-value=0.04  Score=55.00  Aligned_cols=151  Identities=14%  Similarity=0.151  Sum_probs=116.7

Q ss_pred             hhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHcccCCHHHHHHHH
Q 006615          386 PETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRL-PFSTIRLIIDFYGISKKADAALKAF  464 (638)
Q Consensus       386 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~  464 (638)
                      .+...+.+..........|+ .+|...|...-+..-+..|..+|.+..+.+..+ ++.++++++.-|| .++.+-|.++|
T Consensus       347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIF  424 (656)
T KOG1914|consen  347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIF  424 (656)
T ss_pred             hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHH
Confidence            44444555555444444443 457888888888888999999999999998887 7788888888777 57888999999


Q ss_pred             HhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcc--hhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 006615          465 HDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPD--VQTFSGLMYHFALQGDEKIVQKLFSMVR  542 (638)
Q Consensus       465 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~a~~l~~~m~  542 (638)
                      +.-....+..+     .--...++-+...|+-..|..+|++....++.||  ...|..+|.-=+..|++..+.++-+++.
T Consensus       425 eLGLkkf~d~p-----~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~  499 (656)
T KOG1914|consen  425 ELGLKKFGDSP-----EYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRF  499 (656)
T ss_pred             HHHHHhcCCCh-----HHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence            98666544322     3445667777888999999999999999877765  4689999999999999999998887766


Q ss_pred             h
Q 006615          543 Q  543 (638)
Q Consensus       543 ~  543 (638)
                      .
T Consensus       500 ~  500 (656)
T KOG1914|consen  500 T  500 (656)
T ss_pred             H
Confidence            4

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.83  E-value=0.019  Score=51.99  Aligned_cols=120  Identities=18%  Similarity=0.211  Sum_probs=72.5

Q ss_pred             HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcc----cCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHH
Q 006615          415 ILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGI----SKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTL  490 (638)
Q Consensus       415 ~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~  490 (638)
                      .+.+..+++-|...+++|.+-.   +..|.+-|.+++.+    .+.+.+|+-+|+++.++.++.+     .+-+-...++
T Consensus       146 I~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~-----~llnG~Av~~  217 (299)
T KOG3081|consen  146 ILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTP-----LLLNGQAVCH  217 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCCh-----HHHccHHHHH
Confidence            3455666777777777777543   45666655555533    3457777777777776543322     4566667777


Q ss_pred             HccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCH-HHHHHHHHHHHh
Q 006615          491 TKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDE-KIVQKLFSMVRQ  543 (638)
Q Consensus       491 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~-~~a~~l~~~m~~  543 (638)
                      ...|++++|..++++......+ +..|...+|.+-...|.- +-..+.+..++.
T Consensus       218 l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~  270 (299)
T KOG3081|consen  218 LQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTERNLSQLKL  270 (299)
T ss_pred             HHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence            7778888888888877776433 444555555444444443 334445555554

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=97.79  E-value=0.0019  Score=54.88  Aligned_cols=109  Identities=7%  Similarity=-0.028  Sum_probs=89.4

Q ss_pred             HHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCC
Q 006615          158 STWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMR  237 (638)
Q Consensus       158 ~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g  237 (638)
                      .+|++..+.+  |+  .+..+...+...|++++|...|+....... .+...|..+...+.+.|++++|...|+......
T Consensus        14 ~~~~~al~~~--p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~   88 (144)
T PRK15359         14 DILKQLLSVD--PE--TVYASGYASWQEGDYSRAVIDFSWLVMAQP-WSWRAHIALAGTWMMLKEYTTAINFYGHALMLD   88 (144)
T ss_pred             HHHHHHHHcC--HH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            4566665544  43  355677888899999999999999988532 378888999999999999999999999998754


Q ss_pred             CccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 006615          238 IKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG  272 (638)
Q Consensus       238 ~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g  272 (638)
                       ..+...+..+..++.+.|++++|...|++.....
T Consensus        89 -p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~  122 (144)
T PRK15359         89 -ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS  122 (144)
T ss_pred             -CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence             3477889999999999999999999999987744

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.78  E-value=0.0073  Score=54.60  Aligned_cols=217  Identities=15%  Similarity=0.125  Sum_probs=140.3

Q ss_pred             HHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHH-HHHHHHHHhCCCCCchHhHHHHHHHHHhc
Q 006615           72 VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHEL-KTLIGDISSSKFLNVSVNFMNLMQWYSTS  150 (638)
Q Consensus        72 ~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a-~~l~~~~~~~~~~~~~~~~~~ll~~~~~~  150 (638)
                      +.++|...|.+...+.   .+...  -.|+......+...+..-++.+.. .++.+.+.......+......-...|++.
T Consensus        47 ~~raylAlg~~~~~~~---eI~~~--~~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~  121 (299)
T KOG3081|consen   47 MYRAYLALGQYQIVIS---EIKEG--KATPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHD  121 (299)
T ss_pred             HHHHHHHccccccccc---ccccc--cCChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcC
Confidence            5566666666543322   22221  133333333333333333333332 33455555444444434344445678899


Q ss_pred             CCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHH
Q 006615          151 GDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVN----LGKLDSA  226 (638)
Q Consensus       151 g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~----~g~~~~A  226 (638)
                      |++++|++......  +    ..+...=+..+.+..+++-|.+.+++|.+.   -+..|.+-|..+|.+    .+.+.+|
T Consensus       122 ~~~deAl~~~~~~~--~----lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdA  192 (299)
T KOG3081|consen  122 GDFDEALKALHLGE--N----LEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDA  192 (299)
T ss_pred             CChHHHHHHHhccc--h----HHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhH
Confidence            99999999887621  2    444444456677888999999999999984   367888888888875    3568999


Q ss_pred             HHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHH-HHHHHHHhC
Q 006615          227 LEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQG-ANEFLREML  303 (638)
Q Consensus       227 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~-a~~~~~~~~  303 (638)
                      .-+|++|.+. ..|+.-+.|-+..++...|++++|..++++..........+..+++..-...|...+ ..+.+.++.
T Consensus       193 fyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk  269 (299)
T KOG3081|consen  193 FYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLK  269 (299)
T ss_pred             HHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence            9999999863 368888899999999999999999999999987765543344455555455555444 445555553

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.77  E-value=0.0013  Score=65.22  Aligned_cols=125  Identities=18%  Similarity=0.252  Sum_probs=97.6

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006615          139 NFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLV  218 (638)
Q Consensus       139 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~  218 (638)
                      .-..|+..+...++++.|..+|+++.+..  |++  .-.++..+...++-.+|.+++.+..+.. +-+......-...+.
T Consensus       171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl  245 (395)
T PF09295_consen  171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLL  245 (395)
T ss_pred             HHHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence            34456677777788999999999998876  543  4457788888888889999988888652 226666666677788


Q ss_pred             HcCCHHHHHHHHHhcccCCCccC-HhHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006615          219 NLGKLDSALEVFSALPLMRIKRT-SKQYLILVEGFVGVERFDEAKSLLNEMRD  270 (638)
Q Consensus       219 ~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~  270 (638)
                      +.++.+.|.++.+++.+.  .|+ ..+|..|..+|.+.|+++.|+..++.+.-
T Consensus       246 ~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm  296 (395)
T PF09295_consen  246 SKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPM  296 (395)
T ss_pred             hcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence            999999999999988874  465 45899999999999999999998887743

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=97.76  E-value=0.037  Score=51.97  Aligned_cols=188  Identities=11%  Similarity=0.061  Sum_probs=106.3

Q ss_pred             HHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHH---HHHHhcCChHHHHHHHHHHHhCCCCCchHhHH-HHHHHH
Q 006615           72 VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALA---TVLAKSQRNHELKTLIGDISSSKFLNVSVNFM-NLMQWY  147 (638)
Q Consensus        72 ~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li---~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~-~ll~~~  147 (638)
                      +-..+...|.+..|+.-|....+.+   |+  .|.++.   ..|...|+-..|..-+.+.++.  .||-..-. .-...+
T Consensus        44 lGk~lla~~Q~sDALt~yHaAve~d---p~--~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vl  116 (504)
T KOG0624|consen   44 LGKELLARGQLSDALTHYHAAVEGD---PN--NYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVL  116 (504)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHcCC---ch--hHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhh
Confidence            5567778899999999999888653   43  454444   3466778888888877777763  46643211 122456


Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCCCHHh--------------HH--HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 006615          148 STSGDLELVLSTWNEYRQRAKLLSTES--------------YN--IVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYT  211 (638)
Q Consensus       148 ~~~g~~~~A~~l~~~m~~~~~~p~~~~--------------~~--~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~  211 (638)
                      .+.|.++.|..=|+...+.+  |+..+              |+  ..+..+.-.|+...|++....+.+- .+.|...|.
T Consensus       117 lK~Gele~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi-~~Wda~l~~  193 (504)
T KOG0624|consen  117 LKQGELEQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI-QPWDASLRQ  193 (504)
T ss_pred             hhcccHHHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc-CcchhHHHH
Confidence            78999999999999988765  32111              11  1122233445555555555555552 112444455


Q ss_pred             HHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006615          212 VMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRD  270 (638)
Q Consensus       212 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~  270 (638)
                      .-..+|...|++..|..=+....+.. .-++.++--+-..+...|+.+.++..+++..+
T Consensus       194 ~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK  251 (504)
T KOG0624|consen  194 ARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK  251 (504)
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc
Confidence            55555555555555544433333221 12333444444455555555555555555543

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=97.76  E-value=0.025  Score=55.83  Aligned_cols=82  Identities=15%  Similarity=0.046  Sum_probs=37.3

Q ss_pred             HcCCHHHHHHHHHhcccCCCccCHh-HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHH
Q 006615          219 NLGKLDSALEVFSALPLMRIKRTSK-QYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANE  297 (638)
Q Consensus       219 ~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~  297 (638)
                      ..|.+++|+..++.+...  .||.. -+....+.+.+.++.++|.+.++++......--...++.-.++.+.|+.++|..
T Consensus       318 ~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~  395 (484)
T COG4783         318 LAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIR  395 (484)
T ss_pred             HhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHH
Confidence            345555555555554432  23322 223333455555555555555555544322211222344455555555555555


Q ss_pred             HHHHh
Q 006615          298 FLREM  302 (638)
Q Consensus       298 ~~~~~  302 (638)
                      +++..
T Consensus       396 ~L~~~  400 (484)
T COG4783         396 ILNRY  400 (484)
T ss_pred             HHHHH
Confidence            55443

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.76  E-value=0.0015  Score=64.80  Aligned_cols=123  Identities=11%  Similarity=0.085  Sum_probs=96.0

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHcc
Q 006615          176 NIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGV  255 (638)
Q Consensus       176 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~  255 (638)
                      ..|+..+...++++.|.++|+++.+..  |+  ....+.+.+...++-.+|.+++.+..+.. +.|......-...+.+.
T Consensus       173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k  247 (395)
T PF09295_consen  173 DTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSK  247 (395)
T ss_pred             HHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence            344555666789999999999999864  55  44557888888888889999988877532 33666677777788899


Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHhC
Q 006615          256 ERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREML  303 (638)
Q Consensus       256 g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~~  303 (638)
                      ++++.|+++.+++.......-..|+.+..+|.+.|+++.|+..+..+.
T Consensus       248 ~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  248 KKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP  295 (395)
T ss_pred             CCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence            999999999999987654444456788999999999999999998875

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.75  E-value=0.00033  Score=61.35  Aligned_cols=104  Identities=13%  Similarity=0.258  Sum_probs=63.0

Q ss_pred             CchHhHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 006615          135 NVSVNFMNLMQWYST-----SGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRT  209 (638)
Q Consensus       135 ~~~~~~~~ll~~~~~-----~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t  209 (638)
                      .+..+|..+++.|.+     .|.++-....+..|.+-|+.-|..+|+.||+.+=+ |.+- -..+|+.+           
T Consensus        45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~-----------  111 (228)
T PF06239_consen   45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAE-----------  111 (228)
T ss_pred             ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHH-----------
Confidence            455556666666653     36677777777888888888888888888877765 3322 11111111           


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCC
Q 006615          210 YTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER  257 (638)
Q Consensus       210 y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~  257 (638)
                          ..-|-  .+-+-|.+++++|...|+-||..++..|++.+++.+.
T Consensus       112 ----F~hyp--~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~  153 (228)
T PF06239_consen  112 ----FMHYP--RQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH  153 (228)
T ss_pred             ----hccCc--HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence                11111  2345566777777777777777777777777766554

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.73  E-value=0.0019  Score=55.04  Aligned_cols=125  Identities=14%  Similarity=0.157  Sum_probs=77.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHH
Q 006615          140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLS---TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNS--RTYTVMI  214 (638)
Q Consensus       140 ~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~ty~~li  214 (638)
                      |..++..+ ..++...+...++.+.... +.+   ....-.+...+...|++++|...|+........|+.  ...-.|.
T Consensus        15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA   92 (145)
T PF09976_consen   15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA   92 (145)
T ss_pred             HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence            45555555 4677777777777777654 222   122223345677778888888888887776522221  2333455


Q ss_pred             HHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHH
Q 006615          215 EHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM  268 (638)
Q Consensus       215 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m  268 (638)
                      ..+...|++++|...++......+  ....+....+.|.+.|+.++|...|++.
T Consensus        93 ~~~~~~~~~d~Al~~L~~~~~~~~--~~~~~~~~Gdi~~~~g~~~~A~~~y~~A  144 (145)
T PF09976_consen   93 RILLQQGQYDEALATLQQIPDEAF--KALAAELLGDIYLAQGDYDEARAAYQKA  144 (145)
T ss_pred             HHHHHcCCHHHHHHHHHhccCcch--HHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence            667777888888888766544322  3345566667788888888888777653

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=97.72  E-value=0.0021  Score=54.14  Aligned_cols=93  Identities=15%  Similarity=0.088  Sum_probs=43.9

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhc
Q 006615          106 HALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKT  185 (638)
Q Consensus       106 ~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~  185 (638)
                      ..+...+...|++++|...++.....+ +.+...+..+...+.+.|++++|...+++....+ +.+...+..+...+...
T Consensus        21 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~   98 (135)
T TIGR02552        21 YALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLAL   98 (135)
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHc
Confidence            333344444555555555555544432 2233444444555555555555555555544432 22344444444455555


Q ss_pred             CChHHHHHHHHHHHH
Q 006615          186 GKNFEAVETFRQVID  200 (638)
Q Consensus       186 g~~~~A~~~~~~m~~  200 (638)
                      |++++|...|+...+
T Consensus        99 g~~~~A~~~~~~al~  113 (135)
T TIGR02552        99 GEPESALKALDLAIE  113 (135)
T ss_pred             CCHHHHHHHHHHHHH
Confidence            555555555554444

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.71  E-value=0.029  Score=50.48  Aligned_cols=190  Identities=11%  Similarity=0.138  Sum_probs=138.6

Q ss_pred             CCChhHHHHHHHHHHc--CCC-CCCChh-HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHH
Q 006615           79 APNADSALSIMEALKS--NPN-FSHNQS-TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLE  154 (638)
Q Consensus        79 ~~~~~~Al~~~~~~~~--~~~-~~~~~~-~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~  154 (638)
                      ..+.++.++++..+..  ..+ ..++.. .|..++-+....|+.+.|..+++.+...- +.+..+-..-.-.+-..|+.+
T Consensus        25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~  103 (289)
T KOG3060|consen   25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK  103 (289)
T ss_pred             ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence            3567888888888762  123 455554 36667777778899999999999988754 333222222222344568999


Q ss_pred             HHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcc
Q 006615          155 LVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP  234 (638)
Q Consensus       155 ~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~  234 (638)
                      +|.++++.+.+.+ +.|.++|--=+...-..|+--+|++-+.+..+. +.-|...|.-+-..|...|++++|.-.++++.
T Consensus       104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l  181 (289)
T KOG3060|consen  104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL  181 (289)
T ss_pred             hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence            9999999999987 667888887777777778888898888888875 55699999999999999999999999999987


Q ss_pred             cCCCccCHh-HHHHHHHHHHc---cCCHHHHHHHHHHHHhCCC
Q 006615          235 LMRIKRTSK-QYLILVEGFVG---VERFDEAKSLLNEMRDDGK  273 (638)
Q Consensus       235 ~~g~~p~~~-~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~  273 (638)
                      -.  .|-.. .+..+...+.-   ..+.+.|.+.|.+..+...
T Consensus       182 l~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~  222 (289)
T KOG3060|consen  182 LI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP  222 (289)
T ss_pred             Hc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence            63  45433 34444444443   3456778889988877554

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=97.69  E-value=0.011  Score=58.19  Aligned_cols=136  Identities=15%  Similarity=0.140  Sum_probs=104.0

Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHH
Q 006615          147 YSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPN-SRTYTVMIEHLVNLGKLDS  225 (638)
Q Consensus       147 ~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~  225 (638)
                      +...|++++|+..++.+... .+-|..-+......+.+.++.++|.+.++.+..  ..|+ ....-.+-.++.+.|+..+
T Consensus       316 ~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~--l~P~~~~l~~~~a~all~~g~~~e  392 (484)
T COG4783         316 TYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALA--LDPNSPLLQLNLAQALLKGGKPQE  392 (484)
T ss_pred             HHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCCccHHHHHHHHHHHhcCChHH
Confidence            44678889999999987765 344556666667888899999999999999888  4566 4444566678889999999


Q ss_pred             HHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHhC
Q 006615          226 ALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREML  303 (638)
Q Consensus       226 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~~  303 (638)
                      |.++++...... +-|...|..|-.+|...|+..++..-..++                 +...|+++.|..+.....
T Consensus       393 ai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~-----------------~~~~G~~~~A~~~l~~A~  452 (484)
T COG4783         393 AIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEG-----------------YALAGRLEQAIIFLMRAS  452 (484)
T ss_pred             HHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHH-----------------HHhCCCHHHHHHHHHHHH
Confidence            999888876543 447788999999999999988888877665                 445677777777776653

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=97.67  E-value=0.0015  Score=54.98  Aligned_cols=102  Identities=13%  Similarity=-0.014  Sum_probs=60.8

Q ss_pred             HHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHH
Q 006615          444 IRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMY  523 (638)
Q Consensus       444 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~  523 (638)
                      ...+...+...|++++|...|+.....     .|+....|..+...+.+.|++++|...++...+.+ +.+...+..+-.
T Consensus        20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~   93 (135)
T TIGR02552        20 IYALAYNLYQQGRYDEALKLFQLLAAY-----DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAE   93 (135)
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHH
Confidence            344445555666666666666665443     22223556666667777777777777777666543 224555555666


Q ss_pred             HHHccCCHHHHHHHHHHHHhCCCCCCHhhH
Q 006615          524 HFALQGDEKIVQKLFSMVRQNGVEPDAYMF  553 (638)
Q Consensus       524 ~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~  553 (638)
                      .+...|++++|...|+...+.  .|+...+
T Consensus        94 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~  121 (135)
T TIGR02552        94 CLLALGEPESALKALDLAIEI--CGENPEY  121 (135)
T ss_pred             HHHHcCCHHHHHHHHHHHHHh--ccccchH
Confidence            777777777777777766663  3444443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.59  E-value=0.15  Score=54.33  Aligned_cols=220  Identities=13%  Similarity=0.080  Sum_probs=138.5

Q ss_pred             HcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHH--HhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHH
Q 006615           77 RSAPNADSALSIMEALKSNPNFSHNQSTLHALATVL--AKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLE  154 (638)
Q Consensus        77 ~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~--~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~  154 (638)
                      ...+++..|+.-...+.++.   |+. .|..+++++  .+.|+.++|..+++.....+.. |..|...+...|-..|+.+
T Consensus        20 ld~~qfkkal~~~~kllkk~---Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d   94 (932)
T KOG2053|consen   20 LDSSQFKKALAKLGKLLKKH---PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLD   94 (932)
T ss_pred             hhhHHHHHHHHHHHHHHHHC---CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhh
Confidence            35577888888888887653   332 456666665  5788889998888877665443 7778888889999999999


Q ss_pred             HHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC----------CHH
Q 006615          155 LVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLG----------KLD  224 (638)
Q Consensus       155 ~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g----------~~~  224 (638)
                      +|..+|++..+..  |+..-...+..+|++.+.+.+-.+.=-+|-+. ++-+.+.|=.+++.....-          -+-
T Consensus        95 ~~~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~  171 (932)
T KOG2053|consen   95 EAVHLYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLA  171 (932)
T ss_pred             HHHHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHH
Confidence            9999999988765  66777777788888887776544433333331 2335666666666654321          134


Q ss_pred             HHHHHHHhcccCCCcc-CHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHcCChHHHHHHHHH
Q 006615          225 SALEVFSALPLMRIKR-TSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMR--VALERMQEMGFIQGANEFLRE  301 (638)
Q Consensus       225 ~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~--~ll~~~~~~g~~~~a~~~~~~  301 (638)
                      -|.+.++.+.+.+-+- +..=.-.-...+...|++++|.+++..-......+.+...  --+.-+...+++.+..++-.+
T Consensus       172 LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~  251 (932)
T KOG2053|consen  172 LAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSR  251 (932)
T ss_pred             HHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence            4666666666533011 1111222234455678888998888543333333322222  334556677788877777666


Q ss_pred             hCc
Q 006615          302 MLP  304 (638)
Q Consensus       302 ~~~  304 (638)
                      +..
T Consensus       252 Ll~  254 (932)
T KOG2053|consen  252 LLE  254 (932)
T ss_pred             HHH
Confidence            543

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=97.56  E-value=0.076  Score=49.96  Aligned_cols=158  Identities=11%  Similarity=0.013  Sum_probs=104.2

Q ss_pred             ccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHH
Q 006615          382 HFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAAL  461 (638)
Q Consensus       382 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~  461 (638)
                      ..|+...|++...++....  +-|...|..-..+|...|++.+|+.=++...+..-. +..++-.+-..+...|+.+.++
T Consensus       167 ~~GD~~~ai~~i~~llEi~--~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL  243 (504)
T KOG0624|consen  167 GSGDCQNAIEMITHLLEIQ--PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSL  243 (504)
T ss_pred             cCCchhhHHHHHHHHHhcC--cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHH
Confidence            3578888888888876544  457778888888999999999987766655544322 4455556667778888988888


Q ss_pred             HHHHhchhccCCCcchhHHHH---HHH-------H--HHHHHccCChHHHHHHHHHHHhCCCCcchhh---HHHHHHHHH
Q 006615          462 KAFHDDRTLCGPISKFKLMLL---YSS-------L--LRTLTKCKRDFDAINVLEEMIFSGIVPDVQT---FSGLMYHFA  526 (638)
Q Consensus       462 ~~~~~~~~~~~~~~~~~~~~~---~~~-------l--i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t---~~~li~~~~  526 (638)
                      ...++..+.     +|+.-..   |-.       |  +......+++.++++-.+...+..-.-..++   +..+-.++.
T Consensus       244 ~~iRECLKl-----dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~  318 (504)
T KOG0624|consen  244 KEIRECLKL-----DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYR  318 (504)
T ss_pred             HHHHHHHcc-----CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeeccc
Confidence            888877654     3332111   211       1  2234456777777777777766532212333   345556777


Q ss_pred             ccCCHHHHHHHHHHHHhCCCCCC
Q 006615          527 LQGDEKIVQKLFSMVRQNGVEPD  549 (638)
Q Consensus       527 ~~g~~~~a~~l~~~m~~~~~~p~  549 (638)
                      ..|++.+|++.-.+..+  +.||
T Consensus       319 ~d~~~~eAiqqC~evL~--~d~~  339 (504)
T KOG0624|consen  319 EDEQFGEAIQQCKEVLD--IDPD  339 (504)
T ss_pred             ccCCHHHHHHHHHHHHh--cCch
Confidence            88899999988888876  3444

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=97.50  E-value=0.13  Score=51.47  Aligned_cols=140  Identities=11%  Similarity=0.080  Sum_probs=94.2

Q ss_pred             HHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCc-chhhHHHHHHHHHccCCHHHHH
Q 006615          457 ADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVP-DVQTFSGLMYHFALQGDEKIVQ  535 (638)
Q Consensus       457 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~  535 (638)
                      .+.....+++......  .+|+  .+|...++.-.+..-++.|..+|.+..+.+..+ .+..++++|.-||. ++.+-|.
T Consensus       347 ~~~~~~~~~~ll~~~~--~~~t--Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~Af  421 (656)
T KOG1914|consen  347 EKKVHEIYNKLLKIED--IDLT--LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAF  421 (656)
T ss_pred             hhhhHHHHHHHHhhhc--cCCc--eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHH
Confidence            4444445554443322  2343  478888888888888889999999999888777 78888888888774 6778888


Q ss_pred             HHHHHHHhCCCCCCHhhH-HHHHHHHHHH------------hhhCCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 006615          536 KLFSMVRQNGVEPDAYMF-KVLIQAYCKY------------LSNSNLMPD--AATKELLKKSLWKEGRRKEAAAVEERCE  600 (638)
Q Consensus       536 ~l~~~m~~~~~~p~~~~~-~~li~~~~~~------------m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~  600 (638)
                      ++|+-=.++  -+|...| ...++-+.+.            ....++.||  ...|..+++-=..-|+...+.++-+++.
T Consensus       422 rIFeLGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~  499 (656)
T KOG1914|consen  422 RIFELGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRF  499 (656)
T ss_pred             HHHHHHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence            888754432  1233222 2333333332            333366665  5689999999999999999999988877


Q ss_pred             Hcc
Q 006615          601 KIN  603 (638)
Q Consensus       601 ~~~  603 (638)
                      ..-
T Consensus       500 ~af  502 (656)
T KOG1914|consen  500 TAF  502 (656)
T ss_pred             Hhc
Confidence            643

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.45  E-value=0.0061  Score=51.95  Aligned_cols=125  Identities=12%  Similarity=0.104  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCch---HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH--HhHHHH
Q 006615          104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVS---VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLST--ESYNIV  178 (638)
Q Consensus       104 ~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~---~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~--~~~~~l  178 (638)
                      .|..++..+ ..++...+...++.+.+.. +.+.   ...-.+...+...|++++|...|+........|+.  ...-.|
T Consensus        14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L   91 (145)
T PF09976_consen   14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL   91 (145)
T ss_pred             HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence            445555554 3677777777777777643 2221   22223556777778888888888888776522221  233445


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 006615          179 MSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSA  232 (638)
Q Consensus       179 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~  232 (638)
                      ...+...|++++|+..++......  .....+...-..|.+.|+.++|...|+.
T Consensus        92 A~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~  143 (145)
T PF09976_consen   92 ARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK  143 (145)
T ss_pred             HHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            667777888888888886643322  2344555666778888888888887765

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.44  E-value=0.0028  Score=55.71  Aligned_cols=118  Identities=8%  Similarity=0.159  Sum_probs=81.1

Q ss_pred             CCChhHHHHHHHHHH-----hcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH
Q 006615           99 SHNQSTLHALATVLA-----KSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTE  173 (638)
Q Consensus        99 ~~~~~~~~~li~~~~-----~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~  173 (638)
                      ..+..+|..++..+.     +.|..+-....+..|.+.|+..|..+|+.|++.+=+ |.+- -..+|+.+-         
T Consensus        44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F---------  112 (228)
T PF06239_consen   44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEF---------  112 (228)
T ss_pred             cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHh---------
Confidence            345667777777775     357888888899999999999999999999999876 4432 112222221         


Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHhccc
Q 006615          174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGK-LDSALEVFSALPL  235 (638)
Q Consensus       174 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~-~~~A~~~~~~m~~  235 (638)
                            .-|-  .+-+-|++++++|...|+-||..|+..|++.+++.+. +.+..++.-.|.+
T Consensus       113 ------~hyp--~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpk  167 (228)
T PF06239_consen  113 ------MHYP--RQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPK  167 (228)
T ss_pred             ------ccCc--HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence                  1111  2446678888888888888888888888888877664 3344444444443

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.33  E-value=0.15  Score=49.16  Aligned_cols=118  Identities=12%  Similarity=0.116  Sum_probs=74.0

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHccc-CCHHHHHHHHHhchhccCCCcch-hHHHHHHHHHHH
Q 006615          412 MLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGIS-KKADAALKAFHDDRTLCGPISKF-KLMLLYSSLLRT  489 (638)
Q Consensus       412 li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~~li~~  489 (638)
                      .+..|...|++..|-+++..               +...|-.. |++++|.+.|++..+.......+ .....+..+...
T Consensus       100 A~~~y~~~G~~~~aA~~~~~---------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l  164 (282)
T PF14938_consen  100 AIEIYREAGRFSQAAKCLKE---------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADL  164 (282)
T ss_dssp             HHHHHHHCT-HHHHHHHHHH---------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCcHHHHHHHHHH---------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHH
Confidence            45566666766666554443               44566666 78888888888765543222221 123567778888


Q ss_pred             HHccCChHHHHHHHHHHHhCCCC-----cchh-hHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006615          490 LTKCKRDFDAINVLEEMIFSGIV-----PDVQ-TFSGLMYHFALQGDEKIVQKLFSMVRQN  544 (638)
Q Consensus       490 ~~~~g~~~~A~~l~~~m~~~g~~-----p~~~-t~~~li~~~~~~g~~~~a~~l~~~m~~~  544 (638)
                      +.+.|++++|.++|++....-..     .+.. .|-..+-++...|+...|.+.+++....
T Consensus       165 ~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~  225 (282)
T PF14938_consen  165 YARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ  225 (282)
T ss_dssp             HHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred             HHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            99999999999999998775332     2222 2233344666779999999999998864

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.33  E-value=0.0056  Score=58.61  Aligned_cols=130  Identities=9%  Similarity=0.149  Sum_probs=82.3

Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006615          138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRA-KLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH  216 (638)
Q Consensus       138 ~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~  216 (638)
                      .+|..+++..-+.+..+.|..+|.+..+.+ +..++....+++.. ...++.+.|..+|+...+. +.-+...|..-++.
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~-~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~   79 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEY-YCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF   79 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHH-HTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence            356777777777777777777777777543 22333333333332 2245666677787777765 34456666667777


Q ss_pred             HHHcCCHHHHHHHHHhcccCCCcc---CHhHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006615          217 LVNLGKLDSALEVFSALPLMRIKR---TSKQYLILVEGFVGVERFDEAKSLLNEMRD  270 (638)
Q Consensus       217 ~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~  270 (638)
                      +.+.|+.+.|..+|++.... +.+   ....|...+..=.+.|+.+.+..+.+++.+
T Consensus        80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~  135 (280)
T PF05843_consen   80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE  135 (280)
T ss_dssp             HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred             HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            77777888888888776653 222   224788888888888888888888887765

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.28  E-value=0.084  Score=50.81  Aligned_cols=63  Identities=17%  Similarity=0.018  Sum_probs=33.6

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-----CCHH-HHHHHHHHHcccCCHHHHHHHHHhchhc
Q 006615          408 ALEKMLTILARHGHVELVDRLIAKLRSDGMR-----LPFS-TIRLIIDFYGISKKADAALKAFHDDRTL  470 (638)
Q Consensus       408 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~-----~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~  470 (638)
                      .+..+...+.+.|++++|.++|++....-..     .+.. .+-..+-++...|++..|.+.|++....
T Consensus       157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~  225 (282)
T PF14938_consen  157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ  225 (282)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            3455666777788888888888777654322     1111 1222222444456666666666665544

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.23  E-value=0.0095  Score=48.63  Aligned_cols=58  Identities=14%  Similarity=0.222  Sum_probs=23.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCC--CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006615          143 LMQWYSTSGDLELVLSTWNEYRQRAK--LLSTESYNIVMSVYAKTGKNFEAVETFRQVID  200 (638)
Q Consensus       143 ll~~~~~~g~~~~A~~l~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  200 (638)
                      +...+.+.|++++|...|+.+....-  ......+..+..++.+.|+++.|...|+....
T Consensus         8 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~   67 (119)
T TIGR02795         8 AALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVK   67 (119)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence            33344444444444444444443220  00012333344444444444444444444443

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.23  E-value=0.0054  Score=47.33  Aligned_cols=89  Identities=24%  Similarity=0.352  Sum_probs=38.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 006615          143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGK  222 (638)
Q Consensus       143 ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~  222 (638)
                      +...+...|++++|...+++..+.. +.+...+..+...+...+++++|.+.|+...+... .+..++..+...+...|+
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~   83 (100)
T cd00189           6 LGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP-DNAKAYYNLGLAYYKLGK   83 (100)
T ss_pred             HHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchhHHHHHHHHHHHHHh
Confidence            3344444455555555555444332 12223344444444444555555555544444221 122334444444444444


Q ss_pred             HHHHHHHHHhc
Q 006615          223 LDSALEVFSAL  233 (638)
Q Consensus       223 ~~~A~~~~~~m  233 (638)
                      .++|.+.+...
T Consensus        84 ~~~a~~~~~~~   94 (100)
T cd00189          84 YEEALEAYEKA   94 (100)
T ss_pred             HHHHHHHHHHH
Confidence            44444444443

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.22  E-value=0.0053  Score=47.37  Aligned_cols=96  Identities=20%  Similarity=0.283  Sum_probs=71.1

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHH
Q 006615          174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFV  253 (638)
Q Consensus       174 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~  253 (638)
                      +|..+...+...|++++|...+++..+... .+...+..+...+...|++++|.+.|+...... ..+..++..+...+.
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~   79 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDP-DNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYY   79 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHH
Confidence            355667777888889999999888877422 234667777778888888888888888876643 234467777888888


Q ss_pred             ccCCHHHHHHHHHHHHhC
Q 006615          254 GVERFDEAKSLLNEMRDD  271 (638)
Q Consensus       254 ~~g~~~~A~~l~~~m~~~  271 (638)
                      ..|++++|...+.+..+.
T Consensus        80 ~~~~~~~a~~~~~~~~~~   97 (100)
T cd00189          80 KLGKYEEALEAYEKALEL   97 (100)
T ss_pred             HHHhHHHHHHHHHHHHcc
Confidence            888888888888776543

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.15  E-value=0.012  Score=56.37  Aligned_cols=129  Identities=12%  Similarity=0.076  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHH
Q 006615          104 TLHALATVLAKSQRNHELKTLIGDISSSKF-LNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVY  182 (638)
Q Consensus       104 ~~~~li~~~~~~~~~~~a~~l~~~~~~~~~-~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~  182 (638)
                      +|-.+++.+-+.+..+.|+.+|.+.++.+. ..+.+...+++. |...++.+.|..+|+...+. ++.+...|...++-+
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l   80 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL   80 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence            567777777777778888888888775432 334433334443 22345666688888887765 556677788888888


Q ss_pred             HhcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHhccc
Q 006615          183 AKTGKNFEAVETFRQVIDEGAIPN---SRTYTVMIEHLVNLGKLDSALEVFSALPL  235 (638)
Q Consensus       183 ~~~g~~~~A~~~~~~m~~~g~~p~---~~ty~~li~~~~~~g~~~~A~~~~~~m~~  235 (638)
                      .+.++.+.|..+|++.... +.++   ...|...+..=.+.|+++.+.++.+++.+
T Consensus        81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~  135 (280)
T PF05843_consen   81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE  135 (280)
T ss_dssp             HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred             HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            8888888888888887765 3222   23777777777778888888888777765

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.11  E-value=0.019  Score=50.53  Aligned_cols=88  Identities=10%  Similarity=-0.036  Sum_probs=63.2

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHH
Q 006615          405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLP--FSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLL  482 (638)
Q Consensus       405 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  482 (638)
                      ....+..+...+...|++++|...|++.......+.  ...+..+...|.+.|++++|...+++..+.     .|+....
T Consensus        34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~  108 (172)
T PRK02603         34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL-----NPKQPSA  108 (172)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CcccHHH
Confidence            344567777788888999999999998876544332  356777788888889999999988887764     2333356


Q ss_pred             HHHHHHHHHccCChH
Q 006615          483 YSSLLRTLTKCKRDF  497 (638)
Q Consensus       483 ~~~li~~~~~~g~~~  497 (638)
                      +..+...+...|+..
T Consensus       109 ~~~lg~~~~~~g~~~  123 (172)
T PRK02603        109 LNNIAVIYHKRGEKA  123 (172)
T ss_pred             HHHHHHHHHHcCChH
Confidence            666677777766643

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.09  E-value=0.002  Score=48.83  Aligned_cols=79  Identities=16%  Similarity=0.319  Sum_probs=34.6

Q ss_pred             CChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccC-HhHHHHHHHHHHccCCHHHHHH
Q 006615          186 GKNFEAVETFRQVIDEGA-IPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRT-SKQYLILVEGFVGVERFDEAKS  263 (638)
Q Consensus       186 g~~~~A~~~~~~m~~~g~-~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~  263 (638)
                      |+++.|+.+|+++.+... .|+...+-.+..+|.+.|++++|.++++. .+  ..++ ....-.+..+|.+.|++++|++
T Consensus         3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            455555555555555321 11222333345555555555555555555 11  1121 1222233455555555555555


Q ss_pred             HHHH
Q 006615          264 LLNE  267 (638)
Q Consensus       264 l~~~  267 (638)
                      +|++
T Consensus        80 ~l~~   83 (84)
T PF12895_consen   80 ALEK   83 (84)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            5543

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.05  E-value=0.026  Score=45.98  Aligned_cols=98  Identities=11%  Similarity=0.020  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCCHHhHHHHH
Q 006615          104 TLHALATVLAKSQRNHELKTLIGDISSSKF--LNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRA--KLLSTESYNIVM  179 (638)
Q Consensus       104 ~~~~li~~~~~~~~~~~a~~l~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~--~~p~~~~~~~li  179 (638)
                      ++..+...+.+.|++++|...++.+.+...  ......+..+...+.+.|+++.|...|+.+....  .+....++..+.
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~   83 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG   83 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence            445556666667777777777777665321  1112344556777777777777777777776542  111234566666


Q ss_pred             HHHHhcCChHHHHHHHHHHHHc
Q 006615          180 SVYAKTGKNFEAVETFRQVIDE  201 (638)
Q Consensus       180 ~~~~~~g~~~~A~~~~~~m~~~  201 (638)
                      .++.+.|+.++|...+++..+.
T Consensus        84 ~~~~~~~~~~~A~~~~~~~~~~  105 (119)
T TIGR02795        84 MSLQELGDKEKAKATLQQVIKR  105 (119)
T ss_pred             HHHHHhCChHHHHHHHHHHHHH
Confidence            6777777777777777777765

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=96.99  E-value=0.0033  Score=47.63  Aligned_cols=20  Identities=20%  Similarity=0.240  Sum_probs=9.6

Q ss_pred             HHHHHHccCChHHHHHHHHH
Q 006615          486 LLRTLTKCKRDFDAINVLEE  505 (638)
Q Consensus       486 li~~~~~~g~~~~A~~l~~~  505 (638)
                      +..+|.+.|++++|.++++.
T Consensus        31 la~~~~~~~~y~~A~~~~~~   50 (84)
T PF12895_consen   31 LAQCYFQQGKYEEAIELLQK   50 (84)
T ss_dssp             HHHHHHHTTHHHHHHHHHHC
T ss_pred             HHHHHHHCCCHHHHHHHHHH
Confidence            44444444444444444444

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=96.98  E-value=0.039  Score=46.43  Aligned_cols=92  Identities=7%  Similarity=-0.058  Sum_probs=57.3

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 006615          142 NLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLG  221 (638)
Q Consensus       142 ~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g  221 (638)
                      .+..-+...|++++|..+|+-+...+ +-+..-|-.|--++-..|++++|+..|.......+ -|...+-.+-.++...|
T Consensus        40 ~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG  117 (157)
T PRK15363         40 RYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACD  117 (157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcC
Confidence            34444556677777777777666654 22344455566666666777777777777666442 25666666666677777


Q ss_pred             CHHHHHHHHHhccc
Q 006615          222 KLDSALEVFSALPL  235 (638)
Q Consensus       222 ~~~~A~~~~~~m~~  235 (638)
                      +.+.|.+.|+....
T Consensus       118 ~~~~A~~aF~~Ai~  131 (157)
T PRK15363        118 NVCYAIKALKAVVR  131 (157)
T ss_pred             CHHHHHHHHHHHHH
Confidence            77777776665543

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=96.96  E-value=0.014  Score=51.27  Aligned_cols=65  Identities=6%  Similarity=-0.139  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHcccCCHHHHHHHHHhchhc
Q 006615          406 VYALEKMLTILARHGHVELVDRLIAKLRSDGMRL--PFSTIRLIIDFYGISKKADAALKAFHDDRTL  470 (638)
Q Consensus       406 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~  470 (638)
                      ...|..+...+...|++++|...|+........+  ...++..+-..|...|+.++|...++.....
T Consensus        35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~  101 (168)
T CHL00033         35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER  101 (168)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4455666666777788888888888776543222  1245666667777777777777777776544

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=96.92  E-value=0.06  Score=47.42  Aligned_cols=86  Identities=13%  Similarity=0.069  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCc--hHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH
Q 006615          104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNV--SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSV  181 (638)
Q Consensus       104 ~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~  181 (638)
                      .+..+...+...|++++|...+++..+....++  ...+..+...+.+.|++++|...+++..... +-+...+..+...
T Consensus        37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~  115 (172)
T PRK02603         37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVI  115 (172)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence            455555556666777777777766654322211  2456666666777777777777777666543 2234455555555


Q ss_pred             HHhcCChHH
Q 006615          182 YAKTGKNFE  190 (638)
Q Consensus       182 ~~~~g~~~~  190 (638)
                      +...|+...
T Consensus       116 ~~~~g~~~~  124 (172)
T PRK02603        116 YHKRGEKAE  124 (172)
T ss_pred             HHHcCChHh
Confidence            655555433

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=96.91  E-value=0.028  Score=56.02  Aligned_cols=86  Identities=9%  Similarity=-0.072  Sum_probs=44.0

Q ss_pred             HhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHH
Q 006615          113 AKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAV  192 (638)
Q Consensus       113 ~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~  192 (638)
                      ...|+++.|...|++.++.. +.+...|..+..+|.+.|++++|+..+++....+ +.+...|..+..+|...|++++|.
T Consensus        13 ~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~eA~   90 (356)
T PLN03088         13 FVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQTAK   90 (356)
T ss_pred             HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHHHH
Confidence            34455555555555554432 2233344445555555555555555555555543 223445555555555555555555


Q ss_pred             HHHHHHHH
Q 006615          193 ETFRQVID  200 (638)
Q Consensus       193 ~~~~~m~~  200 (638)
                      ..|++..+
T Consensus        91 ~~~~~al~   98 (356)
T PLN03088         91 AALEKGAS   98 (356)
T ss_pred             HHHHHHHH
Confidence            55555554

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.90  E-value=0.11  Score=47.04  Aligned_cols=97  Identities=10%  Similarity=0.022  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH---
Q 006615          104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMS---  180 (638)
Q Consensus       104 ~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~---  180 (638)
                      +.+.++..+...+.+.-....+.+.++...+.++.....|.+.-.+.|+.+.|...|+...+..-+.|..+.+.++.   
T Consensus       179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~  258 (366)
T KOG2796|consen  179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS  258 (366)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence            44455555555566666666666666655455555555666666666666666666665554332333333333322   


Q ss_pred             --HHHhcCChHHHHHHHHHHHH
Q 006615          181 --VYAKTGKNFEAVETFRQVID  200 (638)
Q Consensus       181 --~~~~~g~~~~A~~~~~~m~~  200 (638)
                        .|.-.+++.+|...|.+...
T Consensus       259 a~i~lg~nn~a~a~r~~~~i~~  280 (366)
T KOG2796|consen  259 AFLHLGQNNFAEAHRFFTEILR  280 (366)
T ss_pred             hhheecccchHHHHHHHhhccc
Confidence              22333444445544544443

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=96.90  E-value=0.013  Score=58.23  Aligned_cols=89  Identities=11%  Similarity=-0.151  Sum_probs=53.1

Q ss_pred             HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccC
Q 006615          415 ILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCK  494 (638)
Q Consensus       415 ~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g  494 (638)
                      .+...|+++.|.++|++....... +...|..+..+|.+.|++++|+..++.+...     .|+....|..+..+|...|
T Consensus        11 ~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l-----~P~~~~a~~~lg~~~~~lg   84 (356)
T PLN03088         11 EAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIEL-----DPSLAKAYLRKGTACMKLE   84 (356)
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CcCCHHHHHHHHHHHHHhC
Confidence            344556666666666666655433 4455555556666666666666666666544     2333355666666666666


Q ss_pred             ChHHHHHHHHHHHhC
Q 006615          495 RDFDAINVLEEMIFS  509 (638)
Q Consensus       495 ~~~~A~~l~~~m~~~  509 (638)
                      ++++|+..|++..+.
T Consensus        85 ~~~eA~~~~~~al~l   99 (356)
T PLN03088         85 EYQTAKAALEKGASL   99 (356)
T ss_pred             CHHHHHHHHHHHHHh
Confidence            666666666666653

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.89  E-value=0.22  Score=45.09  Aligned_cols=156  Identities=14%  Similarity=0.127  Sum_probs=115.7

Q ss_pred             HHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHH
Q 006615           75 ALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLE  154 (638)
Q Consensus        75 ~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~  154 (638)
                      +....|+.+.|..+++.+....  +-+..+-..-.-.+-..|++++|.++++.+.+.+ +.|..++-.=+-..-..|+--
T Consensus        61 AAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l  137 (289)
T KOG3060|consen   61 AALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNL  137 (289)
T ss_pred             HHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcH
Confidence            4456789999999999998653  2222222222333556899999999999999876 566667776666666778777


Q ss_pred             HHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHH---HcCCHHHHHHHH
Q 006615          155 LVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTY-TVMIEHLV---NLGKLDSALEVF  230 (638)
Q Consensus       155 ~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty-~~li~~~~---~~g~~~~A~~~~  230 (638)
                      +|++-+....+. +..|...|.-+-..|...|++++|.-.++++.-  +.|....| ..+...+-   ...+++.|.+.|
T Consensus       138 ~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll--~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy  214 (289)
T KOG3060|consen  138 EAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL--IQPFNPLYFQRLAEVLYTQGGAENLELARKYY  214 (289)
T ss_pred             HHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            888888887776 677899999999999999999999999999998  45654444 33433332   344678889999


Q ss_pred             HhcccC
Q 006615          231 SALPLM  236 (638)
Q Consensus       231 ~~m~~~  236 (638)
                      .+..+.
T Consensus       215 ~~alkl  220 (289)
T KOG3060|consen  215 ERALKL  220 (289)
T ss_pred             HHHHHh
Confidence            888764

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.87  E-value=0.75  Score=48.31  Aligned_cols=131  Identities=12%  Similarity=0.151  Sum_probs=85.6

Q ss_pred             CCHHHHHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcC---ChHHHHHHHHHHHhCCCCCchHhHHHH
Q 006615           67 LDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQ---RNHELKTLIGDISSSKFLNVSVNFMNL  143 (638)
Q Consensus        67 ~~~~~~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~l~~~~~~~~~~~~~~~~~~l  143 (638)
                      .+-..++..+...+.+..|+++-.++....+ .- ..+|........+..   +-+.+..+-+++... . -...+|..+
T Consensus       438 l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~-~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~-~-~~~iSy~~i  513 (829)
T KOG2280|consen  438 LSEEVVIDRLVDRHLYSVAIQVAKLLNLPES-QG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK-L-TPGISYAAI  513 (829)
T ss_pred             hchhhhhHHHHhcchhHHHHHHHHHhCCccc-cc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc-C-CCceeHHHH
Confidence            3444578888889999999999999975432 22 446666666665543   223333333344332 2 334558888


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCC----CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 006615          144 MQWYSTSGDLELVLSTWNEYRQRAK----LLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE  201 (638)
Q Consensus       144 l~~~~~~g~~~~A~~l~~~m~~~~~----~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  201 (638)
                      .+.--.+|+.+-|..+++.=...+.    -.+..-+..-+.-..+.|+.+-...++.+|.++
T Consensus       514 A~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~  575 (829)
T KOG2280|consen  514 ARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK  575 (829)
T ss_pred             HHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence            8888899999999998875332221    112344666777788889999888888888764

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=96.80  E-value=0.035  Score=48.68  Aligned_cols=62  Identities=10%  Similarity=-0.061  Sum_probs=29.4

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--chHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 006615          105 LHALATVLAKSQRNHELKTLIGDISSSKFLN--VSVNFMNLMQWYSTSGDLELVLSTWNEYRQR  166 (638)
Q Consensus       105 ~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~--~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~  166 (638)
                      +..+...+...|++++|...++........+  ...++..+...|.+.|+.++|...+++....
T Consensus        38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~  101 (168)
T CHL00033         38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER  101 (168)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3444444445555555555555554321111  1224445555555555555555555555443

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=96.76  E-value=0.55  Score=48.70  Aligned_cols=205  Identities=10%  Similarity=0.037  Sum_probs=116.4

Q ss_pred             CCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCCHH--------hHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 006615          134 LNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQR-AKLLSTE--------SYNIVMSVYAKTGKNFEAVETFRQVIDEGAI  204 (638)
Q Consensus       134 ~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~-~~~p~~~--------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~  204 (638)
                      .|.+..|..|...-.+.-.++.|...|-+.... |++.--.        .-.+=|.+  --|.+++|.++|-+|-++.+ 
T Consensus       689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drrDL-  765 (1189)
T KOG2041|consen  689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRRDL-  765 (1189)
T ss_pred             CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchhhh-
Confidence            466677777777766767777777777554332 3221000        00111122  24778888888877766532 


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCC--ccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 006615          205 PNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRI--KRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVA  282 (638)
Q Consensus       205 p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~l  282 (638)
                              .|..+.+.|++-.+.++++.-.. +.  +.-...|+.+...++....+++|.+.|..-..        +-..
T Consensus       766 --------Aielr~klgDwfrV~qL~r~g~~-d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~--------~e~~  828 (1189)
T KOG2041|consen  766 --------AIELRKKLGDWFRVYQLIRNGGS-DDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD--------TENQ  828 (1189)
T ss_pred             --------hHHHHHhhhhHHHHHHHHHccCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------hHhH
Confidence                    35666777777777666654211 10  11134677777777777777777777765321        1123


Q ss_pred             HHHHHHcCChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHH
Q 006615          283 LERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVS  362 (638)
Q Consensus       283 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (638)
                      +.++.....+++-..+-+.+.++..                                                       
T Consensus       829 ~ecly~le~f~~LE~la~~Lpe~s~-------------------------------------------------------  853 (1189)
T KOG2041|consen  829 IECLYRLELFGELEVLARTLPEDSE-------------------------------------------------------  853 (1189)
T ss_pred             HHHHHHHHhhhhHHHHHHhcCcccc-------------------------------------------------------
Confidence            4555555555554444444432210                                                       


Q ss_pred             HhhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 006615          363 LLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKL  432 (638)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m  432 (638)
                               -...+++++...|.-++|.+.|-...     .|     -.-+..|...+++.+|.++-+..
T Consensus       854 ---------llp~~a~mf~svGMC~qAV~a~Lr~s-----~p-----kaAv~tCv~LnQW~~avelaq~~  904 (1189)
T KOG2041|consen  854 ---------LLPVMADMFTSVGMCDQAVEAYLRRS-----LP-----KAAVHTCVELNQWGEAVELAQRF  904 (1189)
T ss_pred             ---------hHHHHHHHHHhhchHHHHHHHHHhcc-----Cc-----HHHHHHHHHHHHHHHHHHHHHhc
Confidence                     01235677777788888887775432     11     23566778888888888776654

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=96.75  E-value=0.061  Score=56.12  Aligned_cols=142  Identities=9%  Similarity=-0.043  Sum_probs=90.0

Q ss_pred             CCCCCHHHHHHHHHHHccc-----CCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccC--------ChHHHHHH
Q 006615          436 GMRLPFSTIRLIIDFYGIS-----KKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCK--------RDFDAINV  502 (638)
Q Consensus       436 g~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--------~~~~A~~l  502 (638)
                      +.+.+...|...+.+....     +..+.|..+|++..+.     +|+....|..+..++....        +...+.+.
T Consensus       332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l-----dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~  406 (517)
T PRK10153        332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS-----EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTE  406 (517)
T ss_pred             cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence            4455667777777664322     2366777777777765     5555455555444332221        12333444


Q ss_pred             HHHHHhC-CCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 006615          503 LEEMIFS-GIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKK  581 (638)
Q Consensus       503 ~~~m~~~-g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~m~~~g~~p~~~~~~~li~  581 (638)
                      .++.... ....+...|..+.-.....|++++|...+++....                         .|+...|..+..
T Consensus       407 ~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L-------------------------~ps~~a~~~lG~  461 (517)
T PRK10153        407 LDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL-------------------------EMSWLNYVLLGK  461 (517)
T ss_pred             HHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-------------------------CCCHHHHHHHHH
Confidence            4433332 12334466776655556678999999999988875                         356667888888


Q ss_pred             HHhccCcHHHHHHHHHHHHHccCCCC
Q 006615          582 SLWKEGRRKEAAAVEERCEKINDVPS  607 (638)
Q Consensus       582 ~~~~~g~~~~A~~~~~~~~~~~~~~~  607 (638)
                      .+...|+.++|.+.+++....++..|
T Consensus       462 ~~~~~G~~~eA~~~~~~A~~L~P~~p  487 (517)
T PRK10153        462 VYELKGDNRLAADAYSTAFNLRPGEN  487 (517)
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence            88899999999999999888776555

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=96.73  E-value=0.16  Score=53.11  Aligned_cols=158  Identities=10%  Similarity=-0.017  Sum_probs=105.2

Q ss_pred             CCCCCchHhHHHHHHHHHhcC-----CHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcC--------ChHHHHHHHHH
Q 006615          131 SKFLNVSVNFMNLMQWYSTSG-----DLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTG--------KNFEAVETFRQ  197 (638)
Q Consensus       131 ~~~~~~~~~~~~ll~~~~~~g-----~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g--------~~~~A~~~~~~  197 (638)
                      ...+.+...|...+++.....     +.+.|..+|++..+.+ +-....|..+..++....        +...+.+...+
T Consensus       331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~  409 (517)
T PRK10153        331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN  409 (517)
T ss_pred             ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence            344567788888888765432     3779999999999875 223455555544443321        22334444444


Q ss_pred             HHHc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 006615          198 VIDE-GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG  276 (638)
Q Consensus       198 m~~~-g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~  276 (638)
                      .... ....+...|..+.-.+...|++++|...+++....  .|+...|..+...+...|+.++|.+.|++....+  |.
T Consensus       410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~--P~  485 (517)
T PRK10153        410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR--PG  485 (517)
T ss_pred             hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CC
Confidence            3332 23345677887766777789999999999998875  4788899999999999999999999999987654  33


Q ss_pred             HHHHHHHHHHHHcCChH
Q 006615          277 RAMRVALERMQEMGFIQ  293 (638)
Q Consensus       277 ~~~~~ll~~~~~~g~~~  293 (638)
                      ..++.+...+.-.-+++
T Consensus       486 ~pt~~~~~~~~f~~~~~  502 (517)
T PRK10153        486 ENTLYWIENLVFQTSVE  502 (517)
T ss_pred             CchHHHHHhccccccHH
Confidence            33444443333333333

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=96.68  E-value=0.012  Score=42.28  Aligned_cols=51  Identities=22%  Similarity=0.311  Sum_probs=27.3

Q ss_pred             hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc
Q 006615          184 KTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPL  235 (638)
Q Consensus       184 ~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~  235 (638)
                      +.|++++|.++|+++.+.... +...+..+..+|.+.|++++|.++++.+..
T Consensus         3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~   53 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLK   53 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred             hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            445566666666665553211 444455555556666666666666665554

...

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=96.58  E-value=0.0099  Score=42.79  Aligned_cols=63  Identities=21%  Similarity=0.309  Sum_probs=38.9

Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006615          148 STSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVM  213 (638)
Q Consensus       148 ~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~l  213 (638)
                      .+.|++++|.++|+++.... +-+...+..+..+|.+.|++++|.++++++...  .|+...|..+
T Consensus         2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l   64 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQL   64 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHH
Confidence            35567777777777776654 335666666777777777777777777776663  3554444433

...

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.57  E-value=0.029  Score=51.93  Aligned_cols=100  Identities=10%  Similarity=0.013  Sum_probs=66.4

Q ss_pred             HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCC
Q 006615          416 LARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKR  495 (638)
Q Consensus       416 ~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  495 (638)
                      +.+.+++.+|+..|.+.+..... |.+-|..--.+|++.|.++.|++-.+.....     +|+...+|..|..+|...|+
T Consensus        91 ~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i-----Dp~yskay~RLG~A~~~~gk  164 (304)
T KOG0553|consen   91 LMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSI-----DPHYSKAYGRLGLAYLALGK  164 (304)
T ss_pred             HHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhc-----ChHHHHHHHHHHHHHHccCc
Confidence            34566777777777777665433 5555666666777777777777666665543     55555777777777888888


Q ss_pred             hHHHHHHHHHHHhCCCCcchhhHHHHHH
Q 006615          496 DFDAINVLEEMIFSGIVPDVQTFSGLMY  523 (638)
Q Consensus       496 ~~~A~~l~~~m~~~g~~p~~~t~~~li~  523 (638)
                      +++|.+.|++.++  +.|+..+|-.=+.
T Consensus       165 ~~~A~~aykKaLe--ldP~Ne~~K~nL~  190 (304)
T KOG0553|consen  165 YEEAIEAYKKALE--LDPDNESYKSNLK  190 (304)
T ss_pred             HHHHHHHHHhhhc--cCCCcHHHHHHHH
Confidence            8888777777766  4676666654443

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=96.53  E-value=1.3  Score=46.16  Aligned_cols=54  Identities=19%  Similarity=0.193  Sum_probs=36.5

Q ss_pred             CHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHh
Q 006615          241 TSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREM  302 (638)
Q Consensus       241 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~  302 (638)
                      |....-.|.+++...|.-++|.+.|-+-..    |    -..+..|...++|.+|.++-+..
T Consensus       851 ~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p----kaAv~tCv~LnQW~~avelaq~~  904 (1189)
T KOG2041|consen  851 DSELLPVMADMFTSVGMCDQAVEAYLRRSL----P----KAAVHTCVELNQWGEAVELAQRF  904 (1189)
T ss_pred             ccchHHHHHHHHHhhchHHHHHHHHHhccC----c----HHHHHHHHHHHHHHHHHHHHHhc
Confidence            455566677888888888888877754321    1    13466777888888888876654

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.52  E-value=0.89  Score=44.23  Aligned_cols=105  Identities=10%  Similarity=0.065  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHH
Q 006615          104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYA  183 (638)
Q Consensus       104 ~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~  183 (638)
                      .|..+.......|+.+.|..+++.      .|+..   .=+..+.+.|+.+.|   +.+..+.| .|| -+|..|+..--
T Consensus         2 S~a~IA~~A~~~GR~~LA~~LL~~------Ep~~~---~qVplLL~m~e~e~A---L~kAi~Sg-D~D-Li~~vLl~L~~   67 (319)
T PF04840_consen    2 SYAEIARKAYEEGRPKLATKLLEL------EPRAS---KQVPLLLKMGEDELA---LNKAIESG-DTD-LIYLVLLHLKR   67 (319)
T ss_pred             CHHHHHHHHHHcChHHHHHHHHHc------CCChH---HHHHHHhcCCchHHH---HHHHHHcC-Ccc-HHHHHHHHHHH
Confidence            466777778888999999888753      33332   235556667776666   34444444 222 24555554332


Q ss_pred             hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 006615          184 KTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSA  232 (638)
Q Consensus       184 ~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~  232 (638)
                      +.. ..   +++.-+..   .|..   ..+...|++..+.+.-..+|.+
T Consensus        68 ~l~-~s---~f~~il~~---~p~a---~~l~~~~~r~~~~~~L~~~y~q  106 (319)
T PF04840_consen   68 KLS-LS---QFFKILNQ---NPVA---SNLYKKYCREQDRELLKDFYYQ  106 (319)
T ss_pred             hCC-HH---HHHHHHHh---Ccch---HHHHHHHHHhccHHHHHHHHHh
Confidence            221 11   23332222   2332   3345567776777776666654

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.44  E-value=0.052  Score=46.27  Aligned_cols=71  Identities=20%  Similarity=0.245  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHh-----CCCCCCHhh
Q 006615          481 LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQ-----NGVEPDAYM  552 (638)
Q Consensus       481 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~-----~~~~p~~~~  552 (638)
                      .+...++..+...|++++|.++.+.+.... +-|...|..+|.+|...|+..+|.+.|+.+.+     .|+.|+..+
T Consensus        63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~  138 (146)
T PF03704_consen   63 DALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET  138 (146)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence            456777888889999999999999998853 34788999999999999999999999987764     366666544

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=96.40  E-value=0.015  Score=41.38  Aligned_cols=56  Identities=11%  Similarity=0.258  Sum_probs=32.2

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006615          144 MQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVID  200 (638)
Q Consensus       144 l~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  200 (638)
                      ...+.+.|++++|...|++..+.. +-+...+..+..++.+.|++++|...|++..+
T Consensus         4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~   59 (65)
T PF13432_consen    4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE   59 (65)
T ss_dssp             HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            344556666666666666666554 33455555555666666666666666666654

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=96.38  E-value=0.077  Score=44.70  Aligned_cols=90  Identities=12%  Similarity=-0.135  Sum_probs=63.1

Q ss_pred             HHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHcc
Q 006615          449 DFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQ  528 (638)
Q Consensus       449 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~  528 (638)
                      .-+...|++++|.++|+.+...     .|....-|-.|..++-..|++++|+..|........ -|...+-.+-.++...
T Consensus        43 ~~ly~~G~l~~A~~~f~~L~~~-----Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~l  116 (157)
T PRK15363         43 MQLMEVKEFAGAARLFQLLTIY-----DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLAC  116 (157)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHh-----CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHc
Confidence            3445677777777777776543     444456677777777778888888888887777542 3566677777777888


Q ss_pred             CCHHHHHHHHHHHHhC
Q 006615          529 GDEKIVQKLFSMVRQN  544 (638)
Q Consensus       529 g~~~~a~~l~~~m~~~  544 (638)
                      |+.+.|.+-|+..+..
T Consensus       117 G~~~~A~~aF~~Ai~~  132 (157)
T PRK15363        117 DNVCYAIKALKAVVRI  132 (157)
T ss_pred             CCHHHHHHHHHHHHHH
Confidence            8888888888776654

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=96.36  E-value=0.16  Score=41.17  Aligned_cols=93  Identities=15%  Similarity=-0.006  Sum_probs=52.4

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHH
Q 006615          413 LTILARHGHVELVDRLIAKLRSDGMRLPF--STIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTL  490 (638)
Q Consensus       413 i~~~~~~g~~~~a~~l~~~m~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~  490 (638)
                      ..++-..|+.++|..+|++....|...+.  ..+-.+-..+...|++++|..++++.....+......  .....+..++
T Consensus         8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~--~l~~f~Al~L   85 (120)
T PF12688_consen    8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNA--ALRVFLALAL   85 (120)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccH--HHHHHHHHHH
Confidence            34556677777777777777777765432  2333444566667777777777776654422211111  1112222355


Q ss_pred             HccCChHHHHHHHHHHH
Q 006615          491 TKCKRDFDAINVLEEMI  507 (638)
Q Consensus       491 ~~~g~~~~A~~l~~~m~  507 (638)
                      ...|+.++|++.+-...
T Consensus        86 ~~~gr~~eAl~~~l~~l  102 (120)
T PF12688_consen   86 YNLGRPKEALEWLLEAL  102 (120)
T ss_pred             HHCCCHHHHHHHHHHHH
Confidence            66677777777665544

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=96.36  E-value=0.3  Score=39.57  Aligned_cols=88  Identities=13%  Similarity=0.063  Sum_probs=43.2

Q ss_pred             HHHHhcCChHHHHHHHHHHHhCCCCCc--hHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC----HHhHHHHHHHHH
Q 006615          110 TVLAKSQRNHELKTLIGDISSSKFLNV--SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLS----TESYNIVMSVYA  183 (638)
Q Consensus       110 ~~~~~~~~~~~a~~l~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~----~~~~~~li~~~~  183 (638)
                      .++-..|+.++|..+|++....|....  ...+-.+...+...|++++|..+|++.....  |+    ......+..++.
T Consensus         9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L~   86 (120)
T PF12688_consen    9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALALY   86 (120)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHH
Confidence            334455566666666666555554332  1223344455556666666666666555432  21    111122223445


Q ss_pred             hcCChHHHHHHHHHHH
Q 006615          184 KTGKNFEAVETFRQVI  199 (638)
Q Consensus       184 ~~g~~~~A~~~~~~m~  199 (638)
                      ..|+.++|++.+-...
T Consensus        87 ~~gr~~eAl~~~l~~l  102 (120)
T PF12688_consen   87 NLGRPKEALEWLLEAL  102 (120)
T ss_pred             HCCCHHHHHHHHHHHH
Confidence            5566666666555444

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=96.36  E-value=0.016  Score=41.17  Aligned_cols=61  Identities=28%  Similarity=0.336  Sum_probs=50.8

Q ss_pred             HHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 006615          521 LMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCE  600 (638)
Q Consensus       521 li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~  600 (638)
                      +...+...|++++|.+.|+.+.+..  |+                      +...+..+..++.+.|++++|.+.++++.
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~--P~----------------------~~~a~~~lg~~~~~~g~~~~A~~~~~~a~   58 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQD--PD----------------------NPEAWYLLGRILYQQGRYDEALAYYERAL   58 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCS--TT----------------------HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHC--CC----------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3467888999999999999999863  33                      46677889999999999999999999999


Q ss_pred             HccCC
Q 006615          601 KINDV  605 (638)
Q Consensus       601 ~~~~~  605 (638)
                      +..+.
T Consensus        59 ~~~P~   63 (65)
T PF13432_consen   59 ELDPD   63 (65)
T ss_dssp             HHSTT
T ss_pred             HHCcC
Confidence            87653

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=96.33  E-value=0.063  Score=49.05  Aligned_cols=83  Identities=11%  Similarity=0.226  Sum_probs=43.1

Q ss_pred             CHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcC----------------ChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006615          152 DLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTG----------------KNFEAVETFRQVIDEGAIPNSRTYTVMIE  215 (638)
Q Consensus       152 ~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g----------------~~~~A~~~~~~m~~~g~~p~~~ty~~li~  215 (638)
                      .++-....+..|.+.|+..|..+|+.||+.+-+..                +-+-++.++++|...|+.||..+-..|++
T Consensus        87 HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn  166 (406)
T KOG3941|consen   87 HVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVN  166 (406)
T ss_pred             hHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHH
Confidence            34444444455555555555555555555443321                11335566666666666666666666666


Q ss_pred             HHHHcCC-HHHHHHHHHhcc
Q 006615          216 HLVNLGK-LDSALEVFSALP  234 (638)
Q Consensus       216 ~~~~~g~-~~~A~~~~~~m~  234 (638)
                      ++.+.|- ..+..++.-.|.
T Consensus       167 ~FGr~~~p~~K~~Rm~yWmP  186 (406)
T KOG3941|consen  167 AFGRWNFPTKKVKRMLYWMP  186 (406)
T ss_pred             HhccccccHHHHHHHHHhhh
Confidence            6665553 333444444444

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=96.26  E-value=0.3  Score=50.08  Aligned_cols=55  Identities=13%  Similarity=0.082  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchh
Q 006615          406 VYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRT  469 (638)
Q Consensus       406 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~  469 (638)
                      ..+...+...+-+...+..|-++|..|-+.         .++++.....+++++|+.+-+...+
T Consensus       747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe  801 (1081)
T KOG1538|consen  747 REPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE  801 (1081)
T ss_pred             hhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc
Confidence            334444455555666677777777776532         2567778888888888888877443

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.21  E-value=0.034  Score=47.39  Aligned_cols=70  Identities=21%  Similarity=0.284  Sum_probs=48.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCCHHHH
Q 006615          140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVID-----EGAIPNSRTY  210 (638)
Q Consensus       140 ~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~ty  210 (638)
                      ...++..+...|+++.|..+.+.+...+ +.|...|..+|.+|...|+..+|.+.|+++.+     .|+.|+..+-
T Consensus        65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~  139 (146)
T PF03704_consen   65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR  139 (146)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence            4566777778888888888888888775 55677888888888888888888888877754     3777776654

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=96.20  E-value=0.65  Score=44.59  Aligned_cols=139  Identities=11%  Similarity=0.141  Sum_probs=94.1

Q ss_pred             HHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHh--cC----ChHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHHcCC-
Q 006615          153 LELVLSTWNEYRQRAKLLSTESYNIVMSVYAK--TG----KNFEAVETFRQVIDEGA---IPNSRTYTVMIEHLVNLGK-  222 (638)
Q Consensus       153 ~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~--~g----~~~~A~~~~~~m~~~g~---~p~~~ty~~li~~~~~~g~-  222 (638)
                      +++...+++.|.+.|++-+..+|-+-.-....  ..    ...+|.++|+.|++...   .++..++..|+..  ..++ 
T Consensus        78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~  155 (297)
T PF13170_consen   78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV  155 (297)
T ss_pred             HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence            45667788999999988877776553333222  22    34678999999998642   3567788888765  3333 


Q ss_pred             ---HHHHHHHHHhcccCCCccCHh-HHHHHHHHHHccCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChH
Q 006615          223 ---LDSALEVFSALPLMRIKRTSK-QYLILVEGFVGVER---FDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQ  293 (638)
Q Consensus       223 ---~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~  293 (638)
                         .++++++|+.+.+.|+..+.. -+-+-+-+++....   +..+.++++.+.+.|+++....|..+..++-.+..+
T Consensus       156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~  233 (297)
T PF13170_consen  156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPE  233 (297)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCch
Confidence               567888999999888876433 33333444443222   457889999999999999988887666665544443

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=96.18  E-value=0.9  Score=42.43  Aligned_cols=56  Identities=18%  Similarity=0.076  Sum_probs=24.1

Q ss_pred             HHHcCCChhHHHHHHHHHHcCCCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006615           75 ALRSAPNADSALSIMEALKSNPNFSHN-QSTLHALATVLAKSQRNHELKTLIGDISS  130 (638)
Q Consensus        75 ~l~~~~~~~~Al~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~l~~~~~~  130 (638)
                      .+...|++++|++.|+.+....+..|- ....-.+..++.+.++++.|...+++..+
T Consensus        41 ~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~   97 (243)
T PRK10866         41 QKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR   97 (243)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            334445555555555555533211110 00112233444455555555555555544

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=96.17  E-value=0.053  Score=44.34  Aligned_cols=68  Identities=16%  Similarity=0.128  Sum_probs=39.9

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc---------------CCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchh
Q 006615          405 DVYALEKMLTILARHGHVELVDRLIAKLRSD---------------GMRLPFSTIRLIIDFYGISKKADAALKAFHDDRT  469 (638)
Q Consensus       405 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~---------------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~  469 (638)
                      |..++..+|.++++.|+++....+++..=.-               ...|+..+..+++.+|+..|++..|.++.+...+
T Consensus         1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~   80 (126)
T PF12921_consen    1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR   80 (126)
T ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            4567888999999999999888888654211               1224444444444444444444444444444444


Q ss_pred             ccC
Q 006615          470 LCG  472 (638)
Q Consensus       470 ~~~  472 (638)
                      ..+
T Consensus        81 ~Y~   83 (126)
T PF12921_consen   81 KYP   83 (126)
T ss_pred             HcC
Confidence            443

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.07  E-value=0.026  Score=41.96  Aligned_cols=65  Identities=20%  Similarity=0.210  Sum_probs=39.2

Q ss_pred             hHHHHHHHHHHHHHccCChHHHHHHHHHHHhC----CC-Ccc-hhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 006615          478 KLMLLYSSLLRTLTKCKRDFDAINVLEEMIFS----GI-VPD-VQTFSGLMYHFALQGDEKIVQKLFSMVR  542 (638)
Q Consensus       478 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~-~p~-~~t~~~li~~~~~~g~~~~a~~l~~~m~  542 (638)
                      +...+|+.+...|...|++++|+..|++..+.    |- .|+ ..+++.+-..|...|++++|++.+++..
T Consensus         3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al   73 (78)
T PF13424_consen    3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL   73 (78)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            33456666666777777777777776665432    11 122 4456666667777777777777776554

...

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=96.01  E-value=0.1  Score=42.71  Aligned_cols=46  Identities=9%  Similarity=0.117  Sum_probs=20.8

Q ss_pred             CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHH
Q 006615          170 LSTESYNIVMSVYAKTGKNFEAVETFRQVIDE-GAIPNSRTYTVMIE  215 (638)
Q Consensus       170 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~ty~~li~  215 (638)
                      |+..+..+++.+|+.+|++..|+++.+...+. +++.+..+|..|+.
T Consensus        50 Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~   96 (126)
T PF12921_consen   50 PTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE   96 (126)
T ss_pred             CCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence            44444444444444444444444444444432 33334444444444

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=95.95  E-value=1.9  Score=42.58  Aligned_cols=121  Identities=14%  Similarity=0.184  Sum_probs=67.7

Q ss_pred             HHHHHHHHHHHccCChHHHHHHHHHHHhCC-CCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHH-HHH
Q 006615          481 LLYSSLLRTLTKCKRDFDAINVLEEMIFSG-IVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKV-LIQ  558 (638)
Q Consensus       481 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~-li~  558 (638)
                      ..|...|+.-.+..-++.|..+|-+..+.| +.+++..++++|.-++. |+..-|.++|+-=..+  -||...|-. .+.
T Consensus       398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~  474 (660)
T COG5107         398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLL  474 (660)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence            456677777777777777777787777777 56777777777776653 6667777777643332  234333211 111


Q ss_pred             HHHHH--------hhhC---CCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHHHHccC
Q 006615          559 AYCKY--------LSNS---NLMPD--AATKELLKKSLWKEGRRKEAAAVEERCEKIND  604 (638)
Q Consensus       559 ~~~~~--------m~~~---g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~  604 (638)
                      .+.+.        +-+.   .+.-+  ...|..+|+-=..-|+...|..+-++|.+.-+
T Consensus       475 fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~p  533 (660)
T COG5107         475 FLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVP  533 (660)
T ss_pred             HHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcC
Confidence            11111        1111   12222  34566666666666666666666666665443

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=95.93  E-value=1.8  Score=42.11  Aligned_cols=52  Identities=12%  Similarity=0.181  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHcCChHHHHHHH
Q 006615          244 QYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFL  299 (638)
Q Consensus       244 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~-~~ll~~~~~~g~~~~a~~~~  299 (638)
                      +.+.-|.-+...|+...|.++-.+.   . .|+..+ +..+.++++.++|++-..+-
T Consensus       179 Sl~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa  231 (319)
T PF04840_consen  179 SLNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFA  231 (319)
T ss_pred             CHHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            3445566667777777777765554   2 355544 47788888888887766653

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=95.90  E-value=2  Score=44.46  Aligned_cols=251  Identities=19%  Similarity=0.220  Sum_probs=126.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHH---------HHHHHhcCCCCCHHhHHHHHHHHHhcCCh--HHHHHHHHHHHHcCCCCCHH
Q 006615          140 FMNLMQWYSTSGDLELVLST---------WNEYRQRAKLLSTESYNIVMSVYAKTGKN--FEAVETFRQVIDEGAIPNSR  208 (638)
Q Consensus       140 ~~~ll~~~~~~g~~~~A~~l---------~~~m~~~~~~p~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~p~~~  208 (638)
                      +.+-+--|...|.+++|.++         |+.+....  .+.-.+++-=++|.+.++.  -+...-+++|++.|-.|+..
T Consensus       559 ~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~A--LeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~i  636 (1081)
T KOG1538|consen  559 QSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAMEA--LEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDL  636 (1081)
T ss_pred             ccccchhhhhccchhhhhcccccceecchHHHHHHHH--HhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHH
Confidence            44445556777777777543         23332221  2244466666777766554  34445567788888888875


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHH-----HHHHHHccCCHHHHHHHHHHHHh---CCCCCCHHHH
Q 006615          209 TYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLI-----LVEGFVGVERFDEAKSLLNEMRD---DGKFPGRAMR  280 (638)
Q Consensus       209 ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-----li~~~~~~g~~~~A~~l~~~m~~---~g~~p~~~~~  280 (638)
                      ...   ..|+-.|++.+|-++|.+--...  .-...|+.     +..-|...|..++-..+.++-.+   .--.|..   
T Consensus       637 LlA---~~~Ay~gKF~EAAklFk~~G~en--RAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePka---  708 (1081)
T KOG1538|consen  637 LLA---DVFAYQGKFHEAAKLFKRSGHEN--RALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKA---  708 (1081)
T ss_pred             HHH---HHHHhhhhHHHHHHHHHHcCchh--hHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHH---
Confidence            443   44566788888888886533210  11112221     23344445555544444433211   1111211   


Q ss_pred             HHHHHHHHcCChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHH
Q 006615          281 VALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEV  360 (638)
Q Consensus       281 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (638)
                       ....+..+|+.++|..+.-+-                                       .|.+  .+.+.-+..... 
T Consensus       709 -AAEmLiSaGe~~KAi~i~~d~---------------------------------------gW~d--~lidI~rkld~~-  745 (1081)
T KOG1538|consen  709 -AAEMLISAGEHVKAIEICGDH---------------------------------------GWVD--MLIDIARKLDKA-  745 (1081)
T ss_pred             -HHHHhhcccchhhhhhhhhcc---------------------------------------cHHH--HHHHHHhhcchh-
Confidence             223344566666666553211                                       0000  000000000000 


Q ss_pred             HHHhhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 006615          361 VSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLP  440 (638)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~  440 (638)
                              ........+..+.....+.-|-++|..+..          ..++++.....+++++|..+-+...+.  .||
T Consensus       746 --------ere~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~--~~d  805 (1081)
T KOG1538|consen  746 --------EREPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEF--KDD  805 (1081)
T ss_pred             --------hhhHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccc--ccc
Confidence                    000112345566777888889999998742          235777888999999999887765432  233


Q ss_pred             HHHHHHHHHHHcccCCHHHHHHHHH
Q 006615          441 FSTIRLIIDFYGISKKADAALKAFH  465 (638)
Q Consensus       441 ~~~~~~li~~~~~~g~~~~A~~~~~  465 (638)
                      +  |-.-.+-++...++++|.+.|.
T Consensus       806 V--y~pyaqwLAE~DrFeEAqkAfh  828 (1081)
T KOG1538|consen  806 V--YMPYAQWLAENDRFEEAQKAFH  828 (1081)
T ss_pred             c--cchHHHHhhhhhhHHHHHHHHH
Confidence            2  2233334444555555544443

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=95.87  E-value=0.046  Score=39.38  Aligned_cols=62  Identities=26%  Similarity=0.334  Sum_probs=31.8

Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcC-ChHHHHHHHHHHHH
Q 006615          138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTG-KNFEAVETFRQVID  200 (638)
Q Consensus       138 ~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~  200 (638)
                      .+|..+...+.+.|++++|+..|++..+.+ +.+...|..+..++.+.| ++++|++.|++..+
T Consensus         4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~   66 (69)
T PF13414_consen    4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK   66 (69)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence            344455555555555555555555555543 223444555555555555 45555555555443

...

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=95.84  E-value=0.045  Score=40.59  Aligned_cols=66  Identities=9%  Similarity=-0.020  Sum_probs=40.8

Q ss_pred             HHHHHHHHHcccCCHHHHHHHHHhchhcc--CCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 006615          443 TIRLIIDFYGISKKADAALKAFHDDRTLC--GPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIF  508 (638)
Q Consensus       443 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~  508 (638)
                      +++.+...|...|++++|+..|++..+..  .+...|..+.+++.+...|...|++++|++.+++..+
T Consensus         7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen    7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            34445555555555555555555543321  0112344567888899999999999999999887653

...

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.82  E-value=0.11  Score=52.86  Aligned_cols=162  Identities=14%  Similarity=0.126  Sum_probs=110.4

Q ss_pred             HHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcC
Q 006615           72 VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSG  151 (638)
Q Consensus        72 ~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g  151 (638)
                      ......-.++++++++..+.-.-.+.++  ....+.+++.+.+.|..+.|..+..+-.            .-.....+.|
T Consensus       267 ~fk~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg  332 (443)
T PF04053_consen  267 EFKTAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLG  332 (443)
T ss_dssp             HHHHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT
T ss_pred             HHHHHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcC
Confidence            4556667788999888876333222222  3468889999999999999988854322            2346677899


Q ss_pred             CHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006615          152 DLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFS  231 (638)
Q Consensus       152 ~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~  231 (638)
                      +++.|.++.++..      +...|..|.+...+.|+++-|.+.|.+...         |..|+-.|.-.|+.+.-.++-+
T Consensus       333 ~L~~A~~~a~~~~------~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~  397 (443)
T PF04053_consen  333 NLDIALEIAKELD------DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAK  397 (443)
T ss_dssp             -HHHHHHHCCCCS------THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHH
T ss_pred             CHHHHHHHHHhcC------cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHH
Confidence            9999988765443      577899999999999999999999988764         6777778888899888888877


Q ss_pred             hcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHH
Q 006615          232 ALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM  268 (638)
Q Consensus       232 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m  268 (638)
                      .....|-      +|....++.-.|++++..+++.+.
T Consensus       398 ~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~~  428 (443)
T PF04053_consen  398 IAEERGD------INIAFQAALLLGDVEECVDLLIET  428 (443)
T ss_dssp             HHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred             HHHHccC------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence            7665542      666667777778888888887653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=95.81  E-value=0.044  Score=39.48  Aligned_cols=60  Identities=15%  Similarity=0.093  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccC-CHHHHHHHHHHHH
Q 006615          482 LYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQG-DEKIVQKLFSMVR  542 (638)
Q Consensus       482 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g-~~~~a~~l~~~m~  542 (638)
                      .|..+...+.+.|++++|+..|++..+.. +-+...|..+-.+|...| ++++|.+.++...
T Consensus         5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al   65 (69)
T PF13414_consen    5 AWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL   65 (69)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence            44444444445555555555555444442 113334444444444444 3455555544443

...

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=95.78  E-value=0.74  Score=43.13  Aligned_cols=115  Identities=19%  Similarity=0.149  Sum_probs=81.2

Q ss_pred             CHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcc-hhhH
Q 006615          440 PFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPD-VQTF  518 (638)
Q Consensus       440 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~  518 (638)
                      |...|-.|-..|...|+.+.|...|....+..+.  +|+....|...+..-.......++.++|+++...  .|+ +.+.
T Consensus       155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~--n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~--D~~~iral  230 (287)
T COG4235         155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGD--NPEILLGLAEALYYQAGQQMTAKARALLRQALAL--DPANIRAL  230 (287)
T ss_pred             CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc--CCccHHHH
Confidence            7788999999999999999999999998876443  3333233333332222334567899999999886  454 5555


Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 006615          519 SGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAY  560 (638)
Q Consensus       519 ~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~  560 (638)
                      ..|-..+...|++.+|...|+.|.+.  -|.......+|..-
T Consensus       231 ~lLA~~afe~g~~~~A~~~Wq~lL~~--lp~~~~rr~~ie~~  270 (287)
T COG4235         231 SLLAFAAFEQGDYAEAAAAWQMLLDL--LPADDPRRSLIERS  270 (287)
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhc--CCCCCchHHHHHHH
Confidence            56667899999999999999999985  34444555555443

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=95.78  E-value=1.1  Score=38.59  Aligned_cols=96  Identities=20%  Similarity=0.147  Sum_probs=42.7

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CCHHhHHHHHHHHH
Q 006615          105 LHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKL-LSTESYNIVMSVYA  183 (638)
Q Consensus       105 ~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~-p~~~~~~~li~~~~  183 (638)
                      --.+..++.+.|+..+|...|++....-+..|....-.+.++....+++..|...++.+.+.+-. .+..+.-.+...+.
T Consensus        92 r~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~la  171 (251)
T COG4700          92 RYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLA  171 (251)
T ss_pred             HHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHH
Confidence            33444444555555555555555444444444444444444444445555555555544433200 01112223334444


Q ss_pred             hcCChHHHHHHHHHHHH
Q 006615          184 KTGKNFEAVETFRQVID  200 (638)
Q Consensus       184 ~~g~~~~A~~~~~~m~~  200 (638)
                      ..|+.+.|..-|+....
T Consensus       172 a~g~~a~Aesafe~a~~  188 (251)
T COG4700         172 AQGKYADAESAFEVAIS  188 (251)
T ss_pred             hcCCchhHHHHHHHHHH
Confidence            44555555555544444

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=95.74  E-value=1  Score=37.92  Aligned_cols=26  Identities=8%  Similarity=0.010  Sum_probs=11.3

Q ss_pred             HHHHHHHHHcCCChhHHHHHHHHHHc
Q 006615           69 PFIVTHALRSAPNADSALSIMEALKS   94 (638)
Q Consensus        69 ~~~~~~~l~~~~~~~~Al~~~~~~~~   94 (638)
                      +.-++..+...+.+..+..+++++..
T Consensus        10 ~~~vv~~~~~~~~~~~l~~yLe~~~~   35 (140)
T smart00299       10 VSEVVELFEKRNLLEELIPYLESALK   35 (140)
T ss_pred             HHHHHHHHHhCCcHHHHHHHHHHHHc
Confidence            33344444444444444444444443

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.63  E-value=0.17  Score=47.01  Aligned_cols=96  Identities=18%  Similarity=0.225  Sum_probs=55.8

Q ss_pred             HhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHH
Q 006615          113 AKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAV  192 (638)
Q Consensus       113 ~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~  192 (638)
                      .+.+++.+|...|...++.. +-|.+-|..-..+|++.|.++.|.+-.+.....+ +--..+|..|-.+|...|++++|.
T Consensus        92 m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A~  169 (304)
T KOG0553|consen   92 MKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEAI  169 (304)
T ss_pred             HHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHHH
Confidence            34566666666666666532 2334445555666666666666666666555543 222445666666666666666666


Q ss_pred             HHHHHHHHcCCCCCHHHHHH
Q 006615          193 ETFRQVIDEGAIPNSRTYTV  212 (638)
Q Consensus       193 ~~~~~m~~~g~~p~~~ty~~  212 (638)
                      +.|+...+  +.|+..+|-.
T Consensus       170 ~aykKaLe--ldP~Ne~~K~  187 (304)
T KOG0553|consen  170 EAYKKALE--LDPDNESYKS  187 (304)
T ss_pred             HHHHhhhc--cCCCcHHHHH
Confidence            66666555  5566555543

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=95.63  E-value=2.7  Score=41.77  Aligned_cols=188  Identities=15%  Similarity=0.131  Sum_probs=109.4

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH-------HHHHHHccc----CCHHHHHHHHHhchhccCCC
Q 006615          406 VYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIR-------LIIDFYGIS----KKADAALKAFHDDRTLCGPI  474 (638)
Q Consensus       406 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~-------~li~~~~~~----g~~~~A~~~~~~~~~~~~~~  474 (638)
                      ..+|..++....+.++...|...+.-+..-...  ...-.       .+.+..+.-    -+...=+.+|.......  .
T Consensus       298 i~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~--~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~D--i  373 (549)
T PF07079_consen  298 IDRFGNLLSFKVKQVQTEEAKQYLALLKILDPR--ISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYD--I  373 (549)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCc--chhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhc--c
Confidence            456788888899999999998888877644322  21111       122222211    11222233444332210  1


Q ss_pred             cchhHHHHHHHHHHHHHccCC-hHHHHHHHHHHHhCCCCcchhhHHHHH----HHHHcc---CCHHHHHHHHHHHHhCCC
Q 006615          475 SKFKLMLLYSSLLRTLTKCKR-DFDAINVLEEMIFSGIVPDVQTFSGLM----YHFALQ---GDEKIVQKLFSMVRQNGV  546 (638)
Q Consensus       475 ~~~~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~t~~~li----~~~~~~---g~~~~a~~l~~~m~~~~~  546 (638)
                      ...-.+...---..-+.+.|. -++|+.+++...+-. .-|..+-|.+.    .+|...   ..+.+-..+-+-+.+.|+
T Consensus       374 DrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl  452 (549)
T PF07079_consen  374 DRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGL  452 (549)
T ss_pred             cHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCC
Confidence            111111111112233555565 788999999988742 12444333332    344332   334555566667778899


Q ss_pred             CCCHhhHHHHHHHHHHH----------------hhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 006615          547 EPDAYMFKVLIQAYCKY----------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEER  598 (638)
Q Consensus       547 ~p~~~~~~~li~~~~~~----------------m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~  598 (638)
                      .|-.+.-.-+-+.+..+                +--..+.|+..+|..+.-++....+++||..++..
T Consensus       453 ~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~  520 (549)
T PF07079_consen  453 TPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQK  520 (549)
T ss_pred             CcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence            88765555544544444                33346889999999999999999999999999988

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=95.62  E-value=0.085  Score=38.45  Aligned_cols=56  Identities=18%  Similarity=0.141  Sum_probs=34.0

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 006615          145 QWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE  201 (638)
Q Consensus       145 ~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  201 (638)
                      ..|.+.++++.|.++++++...+ +.+...|.....++.+.|++++|.+.|++..+.
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~   58 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL   58 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            44566666666666666666653 334555555666666666666666666666653

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=95.60  E-value=2  Score=40.14  Aligned_cols=178  Identities=12%  Similarity=0.088  Sum_probs=103.7

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhH---HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH
Q 006615          105 LHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNF---MNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSV  181 (638)
Q Consensus       105 ~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~---~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~  181 (638)
                      +-.....+...|+++.|...|+.+....... ...-   -.+..+|.+.+++++|...|++..+..-.-...-|-..+.+
T Consensus        35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g  113 (243)
T PRK10866         35 IYATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRG  113 (243)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHH
Confidence            3334445567899999999999988743222 2222   24567788899999999999998876422223344445555


Q ss_pred             HHh--c---------------CCh---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccC
Q 006615          182 YAK--T---------------GKN---FEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRT  241 (638)
Q Consensus       182 ~~~--~---------------g~~---~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~  241 (638)
                      .+.  .               ++.   .+|++.|+++++               -|-...-..+|.+.+..+..   ..-
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~---------------~yP~S~ya~~A~~rl~~l~~---~la  175 (243)
T PRK10866        114 LTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR---------------GYPNSQYTTDATKRLVFLKD---RLA  175 (243)
T ss_pred             HhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH---------------HCcCChhHHHHHHHHHHHHH---HHH
Confidence            442  1               111   234444444444               33333334555544444332   001


Q ss_pred             HhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHcCChHHHHHHHHHh
Q 006615          242 SKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP---GRAMRVALERMQEMGFIQGANEFLREM  302 (638)
Q Consensus       242 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~~~~ll~~~~~~g~~~~a~~~~~~~  302 (638)
                      .. --.+...|.+.|.+..|..-++.+.+.=...   ....+.+..+|.+.|..++|..+...+
T Consensus       176 ~~-e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l  238 (243)
T PRK10866        176 KY-ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII  238 (243)
T ss_pred             HH-HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            11 1134566888888888888888887642211   113346778888899988888877655

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=95.58  E-value=1.5  Score=39.70  Aligned_cols=55  Identities=15%  Similarity=0.022  Sum_probs=23.4

Q ss_pred             HHcCCChhHHHHHHHHHHcCCCCC-CChhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006615           76 LRSAPNADSALSIMEALKSNPNFS-HNQSTLHALATVLAKSQRNHELKTLIGDISS  130 (638)
Q Consensus        76 l~~~~~~~~Al~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~  130 (638)
                      +...|++.+|+..|+.+....+.. .-....-.++.++.+.|+++.|...++++.+
T Consensus        15 ~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~   70 (203)
T PF13525_consen   15 ALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK   70 (203)
T ss_dssp             HHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            344555555555555555321111 1122333444444555555555555555443

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=95.58  E-value=2.6  Score=41.59  Aligned_cols=167  Identities=13%  Similarity=0.046  Sum_probs=101.6

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhCC---CCCchHhHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCCCHHhHHH
Q 006615          104 TLHALATVLAKSQRNHELKTLIGDISSSK---FLNVSVNFMNLMQWYST---SGDLELVLSTWNEYRQRAKLLSTESYNI  177 (638)
Q Consensus       104 ~~~~li~~~~~~~~~~~a~~l~~~~~~~~---~~~~~~~~~~ll~~~~~---~g~~~~A~~l~~~m~~~~~~p~~~~~~~  177 (638)
                      +...++-+|....+++...++.+.+....   +.....+--...-++-+   .|+.++|++++..+......++..+|..
T Consensus       143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL  222 (374)
T PF13281_consen  143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL  222 (374)
T ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence            44556666888889999999999888742   11122222234455556   7899999999998666666788888888


Q ss_pred             HHHHHHh---------cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC----HHHHHHHH---H-hcccCCC--
Q 006615          178 VMSVYAK---------TGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGK----LDSALEVF---S-ALPLMRI--  238 (638)
Q Consensus       178 li~~~~~---------~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~----~~~A~~~~---~-~m~~~g~--  238 (638)
                      +...|-.         ....++|.+.|.+--+  +.||.++=-.+...+.-.|.    -.+..++-   . ...+.|.  
T Consensus       223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~  300 (374)
T PF13281_consen  223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLE  300 (374)
T ss_pred             HHHHHHHHHHHcCccchHHHHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccc
Confidence            8776533         1235677777776544  23443332222222222332    11222222   1 1112222  


Q ss_pred             -ccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 006615          239 -KRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG  272 (638)
Q Consensus       239 -~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g  272 (638)
                       ..|-..+.++..++.-.|+.++|.+..++|.+..
T Consensus       301 ~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~  335 (374)
T PF13281_consen  301 KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK  335 (374)
T ss_pred             ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence             2355667888888888999999999999988764

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=95.48  E-value=0.26  Score=46.39  Aligned_cols=100  Identities=8%  Similarity=-0.100  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHH
Q 006615          408 ALEKMLTILARHGHVELVDRLIAKLRSDGMRLP--FSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSS  485 (638)
Q Consensus       408 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~  485 (638)
                      .|...+..+.+.|++++|...|+.+...-....  ...+--+..+|...|++++|...|+.+...++..++-  ..++-.
T Consensus       145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~--~dAl~k  222 (263)
T PRK10803        145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKA--ADAMFK  222 (263)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch--hHHHHH
Confidence            355555444566888888888888876543311  2455566677777777777777777776654432222  234445


Q ss_pred             HHHHHHccCChHHHHHHHHHHHhC
Q 006615          486 LLRTLTKCKRDFDAINVLEEMIFS  509 (638)
Q Consensus       486 li~~~~~~g~~~~A~~l~~~m~~~  509 (638)
                      +...+...|+.++|.++|++..+.
T Consensus       223 lg~~~~~~g~~~~A~~~~~~vi~~  246 (263)
T PRK10803        223 VGVIMQDKGDTAKAKAVYQQVIKK  246 (263)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHH
Confidence            555666677777777777777664

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=95.48  E-value=0.22  Score=46.92  Aligned_cols=22  Identities=9%  Similarity=-0.043  Sum_probs=10.5

Q ss_pred             HHHHHccCCHHHHHHHHHHHHh
Q 006615          249 VEGFVGVERFDEAKSLLNEMRD  270 (638)
Q Consensus       249 i~~~~~~g~~~~A~~l~~~m~~  270 (638)
                      ...+...|+.++|..+|+++.+
T Consensus       224 g~~~~~~g~~~~A~~~~~~vi~  245 (263)
T PRK10803        224 GVIMQDKGDTAKAKAVYQQVIK  245 (263)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHH
Confidence            3344444555555555554444

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=95.40  E-value=0.31  Score=46.73  Aligned_cols=130  Identities=12%  Similarity=0.103  Sum_probs=89.9

Q ss_pred             hHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HcccC----CHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCC
Q 006615          422 VELVDRLIAKLRSDGMRLPFSTIRLIIDF--YGISK----KADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKR  495 (638)
Q Consensus       422 ~~~a~~l~~~m~~~g~~~~~~~~~~li~~--~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  495 (638)
                      ++....+++.|.+.|+.-+..+|-+..-.  .....    ...+|..+|+.|++.++....+++ ..+..|+..  ..++
T Consensus        78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D-~~~a~lLA~--~~~~  154 (297)
T PF13170_consen   78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPED-YPFAALLAM--TSED  154 (297)
T ss_pred             HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccc-hhHHHHHhc--cccc
Confidence            45667888999999998887776653322  22222    367899999999999998888887 677777655  3333


Q ss_pred             h----HHHHHHHHHHHhCCCCcch-hhHHHHHHHHHccCC---HHHHHHHHHHHHhCCCCCCHhhHH
Q 006615          496 D----FDAINVLEEMIFSGIVPDV-QTFSGLMYHFALQGD---EKIVQKLFSMVRQNGVEPDAYMFK  554 (638)
Q Consensus       496 ~----~~A~~l~~~m~~~g~~p~~-~t~~~li~~~~~~g~---~~~a~~l~~~m~~~~~~p~~~~~~  554 (638)
                      .    +.++++|+.+.+.|+..+. .-+.+-+-+++....   ..++.++++.+.+.|+++....|.
T Consensus       155 ~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp  221 (297)
T PF13170_consen  155 VEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYP  221 (297)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCcccccccc
Confidence            3    5678889999998887643 334444444443322   357888999999999887765554

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=95.31  E-value=0.24  Score=47.94  Aligned_cols=142  Identities=11%  Similarity=-0.059  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHcccCCHHHHHHHHHhchhccC-CCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHh----CCC-Ccch
Q 006615          442 STIRLIIDFYGISKKADAALKAFHDDRTLCG-PISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIF----SGI-VPDV  515 (638)
Q Consensus       442 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~-~p~~  515 (638)
                      ..|..|-+.|.-.|+++.|+...+.-..... ...+.....++..+..++.-.|+++.|.+.|+.-..    .|- ....
T Consensus       196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA  275 (639)
T KOG1130|consen  196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA  275 (639)
T ss_pred             chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence            4566666677778889988877655322110 011111235788888899999999999988876432    221 1234


Q ss_pred             hhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 006615          516 QTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAV  595 (638)
Q Consensus       516 ~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~  595 (638)
                      .+.-+|-.+|--..++++|+.++.+-..---..+                  ...-....|.+|..++...|..++|...
T Consensus       276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~------------------DriGe~RacwSLgna~~alg~h~kAl~f  337 (639)
T KOG1130|consen  276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELE------------------DRIGELRACWSLGNAFNALGEHRKALYF  337 (639)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HhhhhHHHHHHHHHHHHhhhhHHHHHHH
Confidence            4455667777777777888877754332100000                  0011344566677777777777777766


Q ss_pred             HHHHHH
Q 006615          596 EERCEK  601 (638)
Q Consensus       596 ~~~~~~  601 (638)
                      .+.-.+
T Consensus       338 ae~hl~  343 (639)
T KOG1130|consen  338 AELHLR  343 (639)
T ss_pred             HHHHHH
Confidence            655444

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=95.14  E-value=0.066  Score=51.59  Aligned_cols=136  Identities=11%  Similarity=-0.019  Sum_probs=84.0

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHH----HHcCCCC-CHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcc-hhHHHH
Q 006615          409 LEKMLTILARHGHVELVDRLIAKL----RSDGMRL-PFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISK-FKLMLL  482 (638)
Q Consensus       409 ~~~li~~~~~~g~~~~a~~l~~~m----~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~  482 (638)
                      |..|-..|.-.|+++.|....+.-    ++.|-+. ....+..+.+++.-.|+++.|.+.|+........... .-.+.+
T Consensus       198 ~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQs  277 (639)
T KOG1130|consen  198 YGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQS  277 (639)
T ss_pred             hcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHH
Confidence            334444445567778777665532    2333222 2245667778888888888888888764321110111 111345


Q ss_pred             HHHHHHHHHccCChHHHHHHHHHHHh----C-CCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006615          483 YSSLLRTLTKCKRDFDAINVLEEMIF----S-GIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQN  544 (638)
Q Consensus       483 ~~~li~~~~~~g~~~~A~~l~~~m~~----~-g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~  544 (638)
                      +-+|...|.-...+++|+..+.+-..    . ...-....+-+|-.+|...|..++|+.+.+.-.+.
T Consensus       278 cYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~  344 (639)
T KOG1130|consen  278 CYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS  344 (639)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            66777888888888888888765432    1 11224567888889999999999998887765544

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=94.94  E-value=0.63  Score=46.50  Aligned_cols=66  Identities=12%  Similarity=0.131  Sum_probs=53.5

Q ss_pred             CCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH----HhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 006615          134 LNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLST----ESYNIVMSVYAKTGKNFEAVETFRQVIDE  201 (638)
Q Consensus       134 ~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~  201 (638)
                      +.+...++.+..+|.+.|++++|+..|++..+.+  |+.    .+|..+..+|.+.|+.++|++.+++..+.
T Consensus        72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4556678888888999999999999998887764  543    35888888899999999999999888874

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=94.84  E-value=2.4  Score=36.70  Aligned_cols=131  Identities=15%  Similarity=-0.015  Sum_probs=88.3

Q ss_pred             cCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHH
Q 006615          403 THDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLL  482 (638)
Q Consensus       403 ~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  482 (638)
                      .|++..--.+..++.+.|+..+|...|++...--..-|....-.+-++....++...|...++.+-+-.+....|+.   
T Consensus        86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~---  162 (251)
T COG4700          86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG---  162 (251)
T ss_pred             chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc---
Confidence            56666666778888888888888888888776555556777777777888888888888888887766555555553   


Q ss_pred             HHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHH
Q 006615          483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLF  538 (638)
Q Consensus       483 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~  538 (638)
                      .-.+...|...|+..+|+.-|+.....  -|+...-...-..+.+.|+.+++..-+
T Consensus       163 ~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~  216 (251)
T COG4700         163 HLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQY  216 (251)
T ss_pred             hHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHH
Confidence            233445677788888888888888775  444433322333445666655554433

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.83  E-value=3.2  Score=38.08  Aligned_cols=136  Identities=10%  Similarity=0.037  Sum_probs=104.5

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH---
Q 006615          139 NFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIE---  215 (638)
Q Consensus       139 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~---  215 (638)
                      +-+++++.+.-.|.+.-...++.+..+++-+.+...-..|.+.-.+.|+.+.|...|++..+..-+.|..+++.++.   
T Consensus       179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~  258 (366)
T KOG2796|consen  179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS  258 (366)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence            45677777777788888899999999987677788888898999999999999999998887655566666666553   


Q ss_pred             --HHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 006615          216 --HLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP  275 (638)
Q Consensus       216 --~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p  275 (638)
                        .|.-.+++..|...|.++.... ..|...-|.-.-+..-.|+..+|++.++.|......|
T Consensus       259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~  319 (366)
T KOG2796|consen  259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH  319 (366)
T ss_pred             hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence              3556778999999998888654 2355555554444555689999999999998765444

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=94.80  E-value=0.12  Score=37.55  Aligned_cols=61  Identities=20%  Similarity=0.161  Sum_probs=51.1

Q ss_pred             HHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 006615          522 MYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEK  601 (638)
Q Consensus       522 i~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~  601 (638)
                      -..|.+.+++++|.+.++.+...+  |+                      +...|.....++.+.|++++|.+.+++..+
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~--p~----------------------~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~   57 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELD--PD----------------------DPELWLQRARCLFQLGRYEEALEDLERALE   57 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhC--cc----------------------cchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            356788999999999999999853  33                      456777889999999999999999999998


Q ss_pred             ccCCC
Q 006615          602 INDVP  606 (638)
Q Consensus       602 ~~~~~  606 (638)
                      .++..
T Consensus        58 ~~p~~   62 (73)
T PF13371_consen   58 LSPDD   62 (73)
T ss_pred             HCCCc
Confidence            77633

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=94.75  E-value=1.2  Score=37.39  Aligned_cols=85  Identities=13%  Similarity=0.115  Sum_probs=40.1

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhc
Q 006615          106 HALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKT  185 (638)
Q Consensus       106 ~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~  185 (638)
                      ..++..+...+....+...++.+...+ ..+...++.++..|++... +...+.++.   .   .+.......++.|.+.
T Consensus        11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~---~---~~~yd~~~~~~~c~~~   82 (140)
T smart00299       11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN---K---SNHYDIEKVGKLCEKA   82 (140)
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh---c---cccCCHHHHHHHHHHc
Confidence            345555555555555555555555544 2444455556665555422 222233221   0   1122333355555555


Q ss_pred             CChHHHHHHHHHH
Q 006615          186 GKNFEAVETFRQV  198 (638)
Q Consensus       186 g~~~~A~~~~~~m  198 (638)
                      +.++++.-++.++
T Consensus        83 ~l~~~~~~l~~k~   95 (140)
T smart00299       83 KLYEEAVELYKKD   95 (140)
T ss_pred             CcHHHHHHHHHhh
Confidence            5555555555544

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=94.60  E-value=0.17  Score=50.39  Aligned_cols=98  Identities=13%  Similarity=-0.004  Sum_probs=69.2

Q ss_pred             CHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHH---HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchh
Q 006615          440 PFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLM---LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQ  516 (638)
Q Consensus       440 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~  516 (638)
                      +...++.+..+|.+.|++++|...|++..+.     .|+..   .+|..+..+|.+.|+.++|++.+++..+.+ .|   
T Consensus        74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL-----~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---  144 (453)
T PLN03098         74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL-----NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---  144 (453)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---
Confidence            4577888888999999999999999988776     44443   358888899999999999999999988752 11   


Q ss_pred             hHHHHHH--HHHccCCHHHHHHHHHHHHhCCC
Q 006615          517 TFSGLMY--HFALQGDEKIVQKLFSMVRQNGV  546 (638)
Q Consensus       517 t~~~li~--~~~~~g~~~~a~~l~~~m~~~~~  546 (638)
                      .|..+..  .+....+.++..++++.+.+-|.
T Consensus       145 ~f~~i~~DpdL~plR~~pef~eLlee~rk~G~  176 (453)
T PLN03098        145 KFSTILNDPDLAPFRASPEFKELQEEARKGGE  176 (453)
T ss_pred             hHHHHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence            2222211  12223344577778888887764

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=94.50  E-value=0.36  Score=44.38  Aligned_cols=83  Identities=18%  Similarity=0.254  Sum_probs=68.2

Q ss_pred             HHHHHHHHHHHc-----cCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCC----------------HHHHHHHHH
Q 006615          481 LLYSSLLRTLTK-----CKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGD----------------EKIVQKLFS  539 (638)
Q Consensus       481 ~~~~~li~~~~~-----~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~----------------~~~a~~l~~  539 (638)
                      .+|-..+..+..     .+.++-....++.|.+.|+.-|..+|+.||..+-+..-                -+-+..+++
T Consensus        68 ~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLe  147 (406)
T KOG3941|consen   68 DSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLE  147 (406)
T ss_pred             HHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHH
Confidence            577778877765     36677788889999999999999999999999866432                134678889


Q ss_pred             HHHhCCCCCCHhhHHHHHHHHHHH
Q 006615          540 MVRQNGVEPDAYMFKVLIQAYCKY  563 (638)
Q Consensus       540 ~m~~~~~~p~~~~~~~li~~~~~~  563 (638)
                      +|..+|+.||..+-..|++++++.
T Consensus       148 qME~hGVmPdkE~e~~lvn~FGr~  171 (406)
T KOG3941|consen  148 QMEWHGVMPDKEIEDILVNAFGRW  171 (406)
T ss_pred             HHHHcCCCCchHHHHHHHHHhccc
Confidence            999999999999998888888875

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=94.37  E-value=5.3  Score=39.50  Aligned_cols=163  Identities=12%  Similarity=0.037  Sum_probs=102.5

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcC---CCCCHHhHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006615          141 MNLMQWYSTSGDLELVLSTWNEYRQRA---KLLSTESYNIVMSVYAK---TGKNFEAVETFRQVIDEGAIPNSRTYTVMI  214 (638)
Q Consensus       141 ~~ll~~~~~~g~~~~A~~l~~~m~~~~---~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~ty~~li  214 (638)
                      ..++-.|....+++...++.+.|....   +.-+...--...-++.+   .|+-++|++++..+....-.++..||..+.
T Consensus       145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G  224 (374)
T PF13281_consen  145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG  224 (374)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence            345556888999999999999998752   11122222244556667   899999999999977766678889999888


Q ss_pred             HHHHH---------cCCHHHHHHHHHhcccCCCccCHhH---HHHHHHHHHccC-CHHHHHHHH---H-HHHhCCCCC-C
Q 006615          215 EHLVN---------LGKLDSALEVFSALPLMRIKRTSKQ---YLILVEGFVGVE-RFDEAKSLL---N-EMRDDGKFP-G  276 (638)
Q Consensus       215 ~~~~~---------~g~~~~A~~~~~~m~~~g~~p~~~~---~~~li~~~~~~g-~~~~A~~l~---~-~m~~~g~~p-~  276 (638)
                      +.|-.         ...+++|...|.+--+.  .||..+   +.+|+....... .-.+..++-   . ...+.|... .
T Consensus       225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~  302 (374)
T PF13281_consen  225 RIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM  302 (374)
T ss_pred             HHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence            77642         12377788888765432  354433   233333332211 112233332   2 222344332 2


Q ss_pred             H-HH-H-HHHHHHHHcCChHHHHHHHHHhCcC
Q 006615          277 R-AM-R-VALERMQEMGFIQGANEFLREMLPD  305 (638)
Q Consensus       277 ~-~~-~-~ll~~~~~~g~~~~a~~~~~~~~~~  305 (638)
                      . .| + +++.+..-.|+.++|.+..+.+...
T Consensus       303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l  334 (374)
T PF13281_consen  303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKL  334 (374)
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence            2 23 2 6788889999999999999998643

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=94.33  E-value=5.8  Score=38.99  Aligned_cols=138  Identities=10%  Similarity=-0.044  Sum_probs=81.1

Q ss_pred             CCHHHHHHHH-HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HcccCCHHHHHHHHHhchhccCCCc-----
Q 006615          404 HDVYALEKML-TILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDF--YGISKKADAALKAFHDDRTLCGPIS-----  475 (638)
Q Consensus       404 p~~~~~~~li-~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~~~~~~~~~~-----  475 (638)
                      |...+|-.+- .++.-.|+++.|..+-....+..   ....+...+++  +--.++.+.|...|++.....+...     
T Consensus       166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~  242 (486)
T KOG0550|consen  166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSA  242 (486)
T ss_pred             chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhH
Confidence            4444554432 24456677777776666555443   12233334433  2335667777777777654422111     


Q ss_pred             --chhHHHHHHHHHHHHHccCChHHHHHHHHHHHhC---CCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006615          476 --KFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFS---GIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQN  544 (638)
Q Consensus       476 --~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~  544 (638)
                        .|.....|.--.+-..+.|++.+|.+.|.+.+..   ..+|+...|.....+..+.|+.++|+.--++....
T Consensus       243 ~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i  316 (486)
T KOG0550|consen  243 SMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI  316 (486)
T ss_pred             hhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc
Confidence              1111233444445567788888888888888763   34566667777777778888888888777766653

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=94.13  E-value=3.1  Score=39.15  Aligned_cols=114  Identities=14%  Similarity=0.035  Sum_probs=86.5

Q ss_pred             CCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhc---CChHHHHHHHHHHHHcCCCCCHHHH
Q 006615          134 LNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKT---GKNFEAVETFRQVIDEGAIPNSRTY  210 (638)
Q Consensus       134 ~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~ty  210 (638)
                      +.|...|-.|...|...|+++.|..-|.+..+.. .+|...+..+..++...   ....++.++|+++.+.... |..+.
T Consensus       153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral  230 (287)
T COG4235         153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRAL  230 (287)
T ss_pred             CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHH
Confidence            5678889999999999999999999999988763 46677777777665543   3457889999999885322 56666


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHH
Q 006615          211 TVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEG  251 (638)
Q Consensus       211 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~  251 (638)
                      ..|-..+...|++.+|...|+.|.+..  |....+..+|..
T Consensus       231 ~lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie~  269 (287)
T COG4235         231 SLLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIER  269 (287)
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHHH
Confidence            777778899999999999999998753  444445555543

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=94.02  E-value=7.2  Score=38.90  Aligned_cols=25  Identities=24%  Similarity=0.147  Sum_probs=13.1

Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHH
Q 006615          244 QYLILVEGFVGVERFDEAKSLLNEM  268 (638)
Q Consensus       244 ~~~~li~~~~~~g~~~~A~~l~~~m  268 (638)
                      ++..++....+.++...|.+.+.-+
T Consensus       300 ~F~~~Ls~~Vk~~~T~~a~q~l~lL  324 (549)
T PF07079_consen  300 RFGNLLSFKVKQVQTEEAKQYLALL  324 (549)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            4555555555555555555555443

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=93.82  E-value=2.9  Score=43.40  Aligned_cols=177  Identities=16%  Similarity=0.104  Sum_probs=111.4

Q ss_pred             HHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCch------HhHHHHHHHHHh----cCCHH
Q 006615           85 ALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVS------VNFMNLMQWYST----SGDLE  154 (638)
Q Consensus        85 Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~------~~~~~ll~~~~~----~g~~~  154 (638)
                      ..-+|.-+..-   -|.  .+..++...+=.|+-+.+.+.+.+-.+.+-...+      ..|+..+..++-    ..+.+
T Consensus       176 G~G~f~L~lSl---LPp--~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~  250 (468)
T PF10300_consen  176 GFGLFNLVLSL---LPP--KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLE  250 (468)
T ss_pred             HHHHHHHHHHh---CCH--HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHH
Confidence            34455555532   232  5677778888888888888887776553222221      234555544443    45788


Q ss_pred             HHHHHHHHHHhcCCCCCHHhHHHHH-HHHHhcCChHHHHHHHHHHHHcC--C-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 006615          155 LVLSTWNEYRQRAKLLSTESYNIVM-SVYAKTGKNFEAVETFRQVIDEG--A-IPNSRTYTVMIEHLVNLGKLDSALEVF  230 (638)
Q Consensus       155 ~A~~l~~~m~~~~~~p~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~g--~-~p~~~ty~~li~~~~~~g~~~~A~~~~  230 (638)
                      .|.++++.+.++=  |+...|...- +.+...|++++|.+.|++.....  . +.....+--+.-.+.-.+++++|.+.|
T Consensus       251 ~a~~lL~~~~~~y--P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f  328 (468)
T PF10300_consen  251 EAEELLEEMLKRY--PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYF  328 (468)
T ss_pred             HHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHH
Confidence            8999999998863  6666665554 44667899999999998755321  1 123344445566678889999999999


Q ss_pred             HhcccCCCccCHhHHHHHH-HHHHccCCH-------HHHHHHHHHHH
Q 006615          231 SALPLMRIKRTSKQYLILV-EGFVGVERF-------DEAKSLLNEMR  269 (638)
Q Consensus       231 ~~m~~~g~~p~~~~~~~li-~~~~~~g~~-------~~A~~l~~~m~  269 (638)
                      ..+.+.. .-+..+|.-+. .++...|+.       ++|.++|.+..
T Consensus       329 ~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp  374 (468)
T PF10300_consen  329 LRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP  374 (468)
T ss_pred             HHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence            9988632 12233343333 334456777       88888888873

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=93.73  E-value=6.2  Score=37.12  Aligned_cols=151  Identities=15%  Similarity=0.047  Sum_probs=97.7

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 006615          145 QWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLD  224 (638)
Q Consensus       145 ~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~  224 (638)
                      ......|++.+|..+|+...... +-+...--.+..+|...|+.+.|..++..+...--.........-|..+.+.....
T Consensus       142 ~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~  220 (304)
T COG3118         142 KELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP  220 (304)
T ss_pred             hhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence            44567889999999998887764 23356667788889999999999999988876422222233223344455555544


Q ss_pred             HHHHHHHhcccCCCcc-CHhHHHHHHHHHHccCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHcCChHHHHHHH
Q 006615          225 SALEVFSALPLMRIKR-TSKQYLILVEGFVGVERFDEAKSLLNEMRDD--GKFPGRAMRVALERMQEMGFIQGANEFL  299 (638)
Q Consensus       225 ~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~~~~ll~~~~~~g~~~~a~~~~  299 (638)
                      +...+-++.-.   .| |...--.+-..+...|+.++|.+.+-.+.+.  |...+..--.++..+.--|.-+.+.-.+
T Consensus       221 ~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~  295 (304)
T COG3118         221 EIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAY  295 (304)
T ss_pred             CHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHH
Confidence            44444444433   35 5666677888889999999999887777544  4444444446676666666444443333

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=93.58  E-value=8.1  Score=38.04  Aligned_cols=159  Identities=9%  Similarity=-0.093  Sum_probs=101.6

Q ss_pred             HHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHH--hcCChHHHHHHHHHHHHcCCCCCHHHH---HHH---
Q 006615          376 VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILA--RHGHVELVDRLIAKLRSDGMRLPFSTI---RLI---  447 (638)
Q Consensus       376 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~--~~g~~~~a~~l~~~m~~~g~~~~~~~~---~~l---  447 (638)
                      -+..+...++++.|.+.-..+.+...    ...+...+++.|  -.++.+.|...|++....+  |+...-   ...   
T Consensus       175 ka~cl~~~~~~~~a~~ea~~ilkld~----~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~  248 (486)
T KOG0550|consen  175 KAECLAFLGDYDEAQSEAIDILKLDA----TNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKK  248 (486)
T ss_pred             hhhhhhhcccchhHHHHHHHHHhccc----chhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHH
Confidence            34455556777777766555543321    122333343332  3466777777777766544  222111   111   


Q ss_pred             -------HHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhh-HH
Q 006615          448 -------IDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQT-FS  519 (638)
Q Consensus       448 -------i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~  519 (638)
                             .+-..+.|++..|.+.|.+.....+...+++ +..|-.......+.|+.++|+.--++..+.    |..- ..
T Consensus       249 le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~n-aklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syika  323 (486)
T KOG0550|consen  249 LEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTN-AKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKA  323 (486)
T ss_pred             HHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchh-HHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHH
Confidence                   1234578999999999999888777666666 478888888899999999999998888763    4332 22


Q ss_pred             HHH--HHHHccCCHHHHHHHHHHHHhCC
Q 006615          520 GLM--YHFALQGDEKIVQKLFSMVRQNG  545 (638)
Q Consensus       520 ~li--~~~~~~g~~~~a~~l~~~m~~~~  545 (638)
                      .+.  .++...+++++|++-++...+..
T Consensus       324 ll~ra~c~l~le~~e~AV~d~~~a~q~~  351 (486)
T KOG0550|consen  324 LLRRANCHLALEKWEEAVEDYEKAMQLE  351 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            222  35556788999999998777653

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=93.44  E-value=3.5  Score=33.45  Aligned_cols=66  Identities=11%  Similarity=0.102  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCC
Q 006615          481 LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVE  547 (638)
Q Consensus       481 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~  547 (638)
                      ...+..++.+.+.|+-+.-.+++.++.+. -.++....-.+..||.+.|+..++.+++++..+.|++
T Consensus        87 e~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k  152 (161)
T PF09205_consen   87 EYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK  152 (161)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence            35567788889999999999999998763 3678888888999999999999999999999999863

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=93.40  E-value=5.9  Score=35.86  Aligned_cols=180  Identities=13%  Similarity=0.121  Sum_probs=97.9

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHhCCC--CCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHH
Q 006615          106 HALATVLAKSQRNHELKTLIGDISSSKF--LNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYA  183 (638)
Q Consensus       106 ~~li~~~~~~~~~~~a~~l~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~  183 (638)
                      -.....+...|++.+|...|+.+.....  +--....-.+..++.+.|+++.|...+++....--.-....+...+.+.+
T Consensus         9 Y~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~   88 (203)
T PF13525_consen    9 YQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLS   88 (203)
T ss_dssp             HHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHH
Confidence            3344556678999999999998876421  11223345677888899999999999999876531111222333444433


Q ss_pred             hcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHH
Q 006615          184 KTGKNFEAVETFRQVIDEGAIP---NSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDE  260 (638)
Q Consensus       184 ~~g~~~~A~~~~~~m~~~g~~p---~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~  260 (638)
                      .........     ........   -...|..++.-|-...-..+|.+.+..+.+   ..-..- -.+...|.+.|.+..
T Consensus        89 ~~~~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~---~la~~e-~~ia~~Y~~~~~y~a  159 (203)
T PF13525_consen   89 YYKQIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRN---RLAEHE-LYIARFYYKRGKYKA  159 (203)
T ss_dssp             HHHHHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHH---HHHHHH-HHHHHHHHCTT-HHH
T ss_pred             HHHhCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHH---HHHHHH-HHHHHHHHHcccHHH
Confidence            222111110     00000000   012344555555556666677666655542   111111 225677899999999


Q ss_pred             HHHHHHHHHhCCCCCCH-----HHHHHHHHHHHcCChHHHH
Q 006615          261 AKSLLNEMRDDGKFPGR-----AMRVALERMQEMGFIQGAN  296 (638)
Q Consensus       261 A~~l~~~m~~~g~~p~~-----~~~~ll~~~~~~g~~~~a~  296 (638)
                      |..-++.+.+.  -|+.     ....++.++.+.|..+.+.
T Consensus       160 A~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a~  198 (203)
T PF13525_consen  160 AIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAAD  198 (203)
T ss_dssp             HHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             HHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence            99999988775  3333     2345678888888877544

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=93.34  E-value=9.4  Score=38.03  Aligned_cols=148  Identities=16%  Similarity=0.200  Sum_probs=106.6

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHH
Q 006615          405 DVYALEKMLTILARHGHVELVDRLIAKLRSDG-MRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLY  483 (638)
Q Consensus       405 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~  483 (638)
                      -...|+..|.+.-+..-++.|..+|-+..+.| +.+++.+++++|.-++ .|+..-|.++|+.-....     ||...--
T Consensus       396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f-----~d~~~y~  469 (660)
T COG5107         396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF-----PDSTLYK  469 (660)
T ss_pred             hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC-----CCchHHH
Confidence            35678888888888888999999999999999 6778889999998766 577788899998755442     2322334


Q ss_pred             HHHHHHHHccCChHHHHHHHHHHHhCCCCcc--hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 006615          484 SSLLRTLTKCKRDFDAINVLEEMIFSGIVPD--VQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC  561 (638)
Q Consensus       484 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~  561 (638)
                      +-.+.-+...++-+.|..+|+...+. +.-+  ...|..+|..=..-|++..+..+=+.|...  -|...+.......|.
T Consensus       470 ~kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry~  546 (660)
T COG5107         470 EKYLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRYA  546 (660)
T ss_pred             HHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHHh
Confidence            55566777889999999999955442 1122  457888888888889998888777777753  455444444444443

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.33  E-value=2.4  Score=40.21  Aligned_cols=154  Identities=8%  Similarity=-0.038  Sum_probs=96.9

Q ss_pred             HHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHH----HHHHHHHhcCC
Q 006615          112 LAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYN----IVMSVYAKTGK  187 (638)
Q Consensus       112 ~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~----~li~~~~~~g~  187 (638)
                      +-..|+..+|-..++++.+. .+.|...++..-.+|.-.|+.+.-...++++.-. ..+|...|.    .+.-++..+|-
T Consensus       113 ~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~  190 (491)
T KOG2610|consen  113 LWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGI  190 (491)
T ss_pred             hhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhcc
Confidence            34567777777777777764 4667777777778888888888888888877654 123443333    33344567788


Q ss_pred             hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccC---CCccCHhHHHHHHHHHHccCCHHHHHHH
Q 006615          188 NFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLM---RIKRTSKQYLILVEGFVGVERFDEAKSL  264 (638)
Q Consensus       188 ~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~li~~~~~~g~~~~A~~l  264 (638)
                      +++|.+.-++..+-+- -|...-.++...+--.|++.++.++..+-...   +--.-...|=-..-.+...+.++.|+++
T Consensus       191 y~dAEk~A~ralqiN~-~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI  269 (491)
T KOG2610|consen  191 YDDAEKQADRALQINR-FDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI  269 (491)
T ss_pred             chhHHHHHHhhccCCC-cchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence            8888888777766432 25666667777777778888888877654431   1001112222233345566888888888


Q ss_pred             HHHH
Q 006615          265 LNEM  268 (638)
Q Consensus       265 ~~~m  268 (638)
                      |+.=
T Consensus       270 yD~e  273 (491)
T KOG2610|consen  270 YDRE  273 (491)
T ss_pred             HHHH
Confidence            8754

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=93.26  E-value=1.4  Score=35.58  Aligned_cols=94  Identities=14%  Similarity=0.031  Sum_probs=61.9

Q ss_pred             HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccC
Q 006615          415 ILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCK  494 (638)
Q Consensus       415 ~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g  494 (638)
                      +++..|+++.|++.|.+....-.. ....||.-.+++.-.|+.++|+.=+++..+..++..+... .+|..-...|-..|
T Consensus        52 alaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtac-qa~vQRg~lyRl~g  129 (175)
T KOG4555|consen   52 ALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTAC-QAFVQRGLLYRLLG  129 (175)
T ss_pred             HHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHH-HHHHHHHHHHHHhC
Confidence            456777888888877776654322 5567777777777777777777777777666554433221 34444445566677


Q ss_pred             ChHHHHHHHHHHHhCC
Q 006615          495 RDFDAINVLEEMIFSG  510 (638)
Q Consensus       495 ~~~~A~~l~~~m~~~g  510 (638)
                      +.+.|..-|+..-+.|
T Consensus       130 ~dd~AR~DFe~AA~LG  145 (175)
T KOG4555|consen  130 NDDAARADFEAAAQLG  145 (175)
T ss_pred             chHHHHHhHHHHHHhC
Confidence            7888887777776655

>PRK15331 chaperone protein SicA; Provisional

Probab=93.16  E-value=2  Score=36.55  Aligned_cols=87  Identities=9%  Similarity=-0.010  Sum_probs=47.1

Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 006615          147 YSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSA  226 (638)
Q Consensus       147 ~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A  226 (638)
                      +-..|++++|..+|.-+...+. -|..-|..|..++-..+++++|...|...-..+. -|...+--.-.+|...|+.+.|
T Consensus        47 ~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A  124 (165)
T PRK15331         47 FYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKA  124 (165)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHH
Confidence            3456666666666666655431 2233444555555556666666666665544332 1333344444555666666666


Q ss_pred             HHHHHhccc
Q 006615          227 LEVFSALPL  235 (638)
Q Consensus       227 ~~~~~~m~~  235 (638)
                      .+.|+....
T Consensus       125 ~~~f~~a~~  133 (165)
T PRK15331        125 RQCFELVNE  133 (165)
T ss_pred             HHHHHHHHh
Confidence            666655543

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=92.70  E-value=11  Score=38.32  Aligned_cols=165  Identities=12%  Similarity=0.109  Sum_probs=91.4

Q ss_pred             HHHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhc
Q 006615           71 IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTS  150 (638)
Q Consensus        71 ~~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~  150 (638)
                      .++..-.+..++..-++.-+++.+..   |+..+ ..++-+--......++++++++..+.|-    ..       +.+.
T Consensus       173 ~IMq~AWRERnp~aRIkaA~eALei~---pdCAd-AYILLAEEeA~Ti~Eae~l~rqAvkAgE----~~-------lg~s  237 (539)
T PF04184_consen  173 EIMQKAWRERNPQARIKAAKEALEIN---PDCAD-AYILLAEEEASTIVEAEELLRQAVKAGE----AS-------LGKS  237 (539)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhh---hhhhH-HHhhcccccccCHHHHHHHHHHHHHHHH----Hh-------hchh
Confidence            35555667777777777766666432   33211 1122222335567888888887765431    00       1111


Q ss_pred             CCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCHHHHHHH
Q 006615          151 GDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAI-PNSRTYTVMIEHLVNLGKLDSALEV  229 (638)
Q Consensus       151 g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~ty~~li~~~~~~g~~~~A~~~  229 (638)
                      ...+..-..++....++..|=..+-.-+..++-+.|+.++|.+.|++|.+.... -+......|+.++...+.+.++..+
T Consensus       238 ~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~l  317 (539)
T PF04184_consen  238 QFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQAL  317 (539)
T ss_pred             hhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHH
Confidence            111111112222333332222333344666667789999999999999875311 1334566788899999999999998


Q ss_pred             HHhcccCCCccC-HhHHHHHHH
Q 006615          230 FSALPLMRIKRT-SKQYLILVE  250 (638)
Q Consensus       230 ~~~m~~~g~~p~-~~~~~~li~  250 (638)
                      +.+-.+.....+ ..+|+..+-
T Consensus       318 L~kYdDi~lpkSAti~YTaALL  339 (539)
T PF04184_consen  318 LAKYDDISLPKSATICYTAALL  339 (539)
T ss_pred             HHHhccccCCchHHHHHHHHHH
Confidence            888765333222 345666543

The molecular function of this protein is uncertain.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=92.52  E-value=9.5  Score=35.93  Aligned_cols=143  Identities=16%  Similarity=0.153  Sum_probs=69.8

Q ss_pred             HHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHH
Q 006615          112 LAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEA  191 (638)
Q Consensus       112 ~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A  191 (638)
                      ....+++.++..+|+........ +...--.+...|...|+.+.|..+++.+....-.........-|..+.+.....+.
T Consensus       144 ~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~  222 (304)
T COG3118         144 LIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI  222 (304)
T ss_pred             hhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence            34556666666666665543221 12233455666666666666666666665442111111112223344444444444


Q ss_pred             HHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhccc--CCCccCHhHHHHHHHHHHccCCHH
Q 006615          192 VETFRQVIDEGAIP-NSRTYTVMIEHLVNLGKLDSALEVFSALPL--MRIKRTSKQYLILVEGFVGVERFD  259 (638)
Q Consensus       192 ~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~~~~~li~~~~~~g~~~  259 (638)
                      ..+-.+.-..   | |...-..+...+...|+.++|.+.+-.+.+  .|. -|...-..|+..+.--|.-+
T Consensus       223 ~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~-~d~~~Rk~lle~f~~~g~~D  289 (304)
T COG3118         223 QDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGF-EDGEARKTLLELFEAFGPAD  289 (304)
T ss_pred             HHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc-cCcHHHHHHHHHHHhcCCCC
Confidence            4444444432   4 444444555566666666666554443332  222 24445555666665555333

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=92.51  E-value=3.7  Score=40.25  Aligned_cols=103  Identities=15%  Similarity=0.012  Sum_probs=74.0

Q ss_pred             HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 006615          481 LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAY  560 (638)
Q Consensus       481 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~  560 (638)
                      .++..+..+|.+.+++.+|++.-+..+..+ ++|+...--=-.+|...|+++.|...|+.+++.  .|+..         
T Consensus       258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nk---------  325 (397)
T KOG0543|consen  258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNK---------  325 (397)
T ss_pred             HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcH---------
Confidence            578888899999999999999999988864 456666666678999999999999999999984  44422         


Q ss_pred             HHHhhhCCCCCCHHHHHHHHHHHhccCcHH-HHHHHHHHHHHccCCCCc
Q 006615          561 CKYLSNSNLMPDAATKELLKKSLWKEGRRK-EAAAVEERCEKINDVPSL  608 (638)
Q Consensus       561 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~-~A~~~~~~~~~~~~~~~~  608 (638)
                                   ..-+-|+.+--+....+ ...++|..|-..-...+.
T Consensus       326 -------------a~~~el~~l~~k~~~~~~kekk~y~~mF~k~~~~~~  361 (397)
T KOG0543|consen  326 -------------AARAELIKLKQKIREYEEKEKKMYANMFAKLAEESA  361 (397)
T ss_pred             -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence                         22233444444444443 347788888776554433

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=92.39  E-value=1.5  Score=41.33  Aligned_cols=76  Identities=17%  Similarity=0.260  Sum_probs=52.3

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCCHHHHHHH
Q 006615          139 NFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVID-----EGAIPNSRTYTVM  213 (638)
Q Consensus       139 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~ty~~l  213 (638)
                      ++..++..+..+|+++.+...++++.... +-|...|..+|.+|.+.|+...|+..|+++.+     .|+.|...+....
T Consensus       155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y  233 (280)
T COG3629         155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY  233 (280)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence            35667777777777777777777777764 45677777777777777777777777777665     3666665555444


Q ss_pred             HH
Q 006615          214 IE  215 (638)
Q Consensus       214 i~  215 (638)
                      ..
T Consensus       234 ~~  235 (280)
T COG3629         234 EE  235 (280)
T ss_pred             HH
Confidence            33

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=92.27  E-value=9.3  Score=35.25  Aligned_cols=54  Identities=22%  Similarity=0.172  Sum_probs=27.8

Q ss_pred             HcCCChhHHHHHHHHHHcCCCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006615           77 RSAPNADSALSIMEALKSNPNFSH-NQSTLHALATVLAKSQRNHELKTLIGDISS  130 (638)
Q Consensus        77 ~~~~~~~~Al~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~l~~~~~~  130 (638)
                      ...|++++|.+-|+.+....++.| ...+.-.++-++-+.+++++|...+++..+
T Consensus        45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~   99 (254)
T COG4105          45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIR   99 (254)
T ss_pred             HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            345666666666666654333322 333344444455555566666555555543

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=92.18  E-value=8.1  Score=40.20  Aligned_cols=179  Identities=19%  Similarity=0.159  Sum_probs=123.2

Q ss_pred             HHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCC-----CHHhHHHHHHHHHh----cCChH
Q 006615          120 ELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRA-KLL-----STESYNIVMSVYAK----TGKNF  189 (638)
Q Consensus       120 ~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~-~~p-----~~~~~~~li~~~~~----~g~~~  189 (638)
                      -..-+|+-+.+. +||.   ...++...+=.||-+.+++++.+-.+.+ +.-     -.-.|+.++..++-    ..+.+
T Consensus       175 ~G~G~f~L~lSl-LPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~  250 (468)
T PF10300_consen  175 FGFGLFNLVLSL-LPPK---VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLE  250 (468)
T ss_pred             HHHHHHHHHHHh-CCHH---HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHH
Confidence            344566666663 3333   5678888888899999999888765532 221     12246666655544    45789


Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHhcccCC--C-ccCHhHHHHHHHHHHccCCHHHHHHHH
Q 006615          190 EAVETFRQVIDEGAIPNSRTYTVMI-EHLVNLGKLDSALEVFSALPLMR--I-KRTSKQYLILVEGFVGVERFDEAKSLL  265 (638)
Q Consensus       190 ~A~~~~~~m~~~g~~p~~~ty~~li-~~~~~~g~~~~A~~~~~~m~~~g--~-~p~~~~~~~li~~~~~~g~~~~A~~l~  265 (638)
                      .|.+++..+.+.  -|+..-|...- +.+...|++++|.+.|+......  . +.....+--+.-.+.-..++++|.+.|
T Consensus       251 ~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f  328 (468)
T PF10300_consen  251 EAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYF  328 (468)
T ss_pred             HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHH
Confidence            999999999985  68877776544 45667899999999999754321  1 123445666777888899999999999


Q ss_pred             HHHHhCCCCCCHHHH--HHHHHHHHcCCh-------HHHHHHHHHhCcC
Q 006615          266 NEMRDDGKFPGRAMR--VALERMQEMGFI-------QGANEFLREMLPD  305 (638)
Q Consensus       266 ~~m~~~g~~p~~~~~--~ll~~~~~~g~~-------~~a~~~~~~~~~~  305 (638)
                      .++.+..-- ...+|  ....++...|+.       ++|.++|+++.+-
T Consensus       329 ~~L~~~s~W-Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l  376 (468)
T PF10300_consen  329 LRLLKESKW-SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL  376 (468)
T ss_pred             HHHHhcccc-HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence            999774322 23444  444555677887       8999999987543

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PRK11906 transcriptional regulator; Provisional

Probab=91.86  E-value=10  Score=38.36  Aligned_cols=20  Identities=15%  Similarity=0.306  Sum_probs=12.9

Q ss_pred             hhHHHHHHHHHHcCCCCCCC
Q 006615           82 ADSALSIMEALKSNPNFSHN  101 (638)
Q Consensus        82 ~~~Al~~~~~~~~~~~~~~~  101 (638)
                      .+.|+.+|.+........|+
T Consensus       274 ~~~Al~lf~ra~~~~~ldp~  293 (458)
T PRK11906        274 IYRAMTIFDRLQNKSDIQTL  293 (458)
T ss_pred             HHHHHHHHHHHhhcccCCcc
Confidence            55688888888743345555

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=91.84  E-value=2.6  Score=43.17  Aligned_cols=128  Identities=11%  Similarity=0.182  Sum_probs=72.7

Q ss_pred             HHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcC
Q 006615           72 VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSG  151 (638)
Q Consensus        72 ~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g  151 (638)
                      +++=|.+.|-++.|+.+-..-..             =.....+.|+++.|.++.++      ..+...|..|.+...+.|
T Consensus       301 i~~fL~~~G~~e~AL~~~~D~~~-------------rFeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~~g  361 (443)
T PF04053_consen  301 IARFLEKKGYPELALQFVTDPDH-------------RFELALQLGNLDIALEIAKE------LDDPEKWKQLGDEALRQG  361 (443)
T ss_dssp             HHHHHHHTT-HHHHHHHSS-HHH-------------HHHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHCCCHHHHHhhcCChHH-------------HhHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHHHHcC
Confidence            56666777777777765433221             22334456777766665432      234556777777777777


Q ss_pred             CHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006615          152 DLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFS  231 (638)
Q Consensus       152 ~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~  231 (638)
                      +++-|.+.|++...         |..|+-.|.-.|+.+.-.++-+.....|-      +|....++.-.|++++..+++.
T Consensus       362 ~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~  426 (443)
T PF04053_consen  362 NIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLI  426 (443)
T ss_dssp             BHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred             CHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHH
Confidence            77777777765432         55566666666776666666665555542      4445555555666666666665


Q ss_pred             hc
Q 006615          232 AL  233 (638)
Q Consensus       232 ~m  233 (638)
                      +-
T Consensus       427 ~~  428 (443)
T PF04053_consen  427 ET  428 (443)
T ss_dssp             HT
T ss_pred             Hc
Confidence            54

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=91.80  E-value=13  Score=35.73  Aligned_cols=61  Identities=13%  Similarity=0.144  Sum_probs=35.2

Q ss_pred             hHHHHHHHHHHccCCHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHhC
Q 006615          243 KQYLILVEGFVGVERFD---EAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREML  303 (638)
Q Consensus       243 ~~~~~li~~~~~~g~~~---~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~~  303 (638)
                      .+...++.+|...+..+   +|..+++.+......+-....--+..+.+.++.+++.+.+.+|.
T Consensus        85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi  148 (278)
T PF08631_consen   85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMI  148 (278)
T ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHH
Confidence            45666777777766644   45556666644433322233233444555777777777777764

It is also involved in sporulation [].

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.76  E-value=7.7  Score=33.26  Aligned_cols=138  Identities=17%  Similarity=0.148  Sum_probs=73.4

Q ss_pred             CHHHHHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchH-hHHHHHH-
Q 006615           68 DPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSV-NFMNLMQ-  145 (638)
Q Consensus        68 ~~~~~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~-~~~~ll~-  145 (638)
                      +.|...--+.+.+..++|+.-|..+.+.+.-....-..-.........|+...|...|+++-+....|-.. -...|=. 
T Consensus        60 d~flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa  139 (221)
T COG4649          60 DAFLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAA  139 (221)
T ss_pred             HHHHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHH
Confidence            33444445566777777777777776553111121122233334456677777777777766543333222 1111111 


Q ss_pred             -HHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 006615          146 -WYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIP  205 (638)
Q Consensus       146 -~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p  205 (638)
                       .+...|.+++...-.+-+...+-+--...-..|--+-.+.|++.+|...|.++......|
T Consensus       140 ~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap  200 (221)
T COG4649         140 YLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP  200 (221)
T ss_pred             HHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence             233556666666666666554433334444555555666777777777777766644444

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.63  E-value=4.7  Score=38.35  Aligned_cols=152  Identities=11%  Similarity=-0.001  Sum_probs=110.0

Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH----HHHHHHHcCC
Q 006615          147 YSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTV----MIEHLVNLGK  222 (638)
Q Consensus       147 ~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~----li~~~~~~g~  222 (638)
                      ..-.|+..+|-..++++.+. .+.|..+++..=.+|.-.|+.+.-...+++..-. -.||...|..    ..-++..+|-
T Consensus       113 ~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~  190 (491)
T KOG2610|consen  113 LWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGI  190 (491)
T ss_pred             hhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhcc
Confidence            34568888999999999876 6788999999999999999999999998888754 2344433333    3334568999


Q ss_pred             HHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHcCChHHHHHH
Q 006615          223 LDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR----AMRVALERMQEMGFIQGANEF  298 (638)
Q Consensus       223 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~~~~ll~~~~~~g~~~~a~~~  298 (638)
                      +++|++.-++..+.+ +-|...-.++...+--.|+..++.++..+-...=-..+.    .+......+...+.++.|.++
T Consensus       191 y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI  269 (491)
T KOG2610|consen  191 YDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI  269 (491)
T ss_pred             chhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence            999999998887644 346667778888888899999999987765332111111    112333445677999999999


Q ss_pred             HHH
Q 006615          299 LRE  301 (638)
Q Consensus       299 ~~~  301 (638)
                      |+.
T Consensus       270 yD~  272 (491)
T KOG2610|consen  270 YDR  272 (491)
T ss_pred             HHH
Confidence            875

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.61  E-value=8.1  Score=33.16  Aligned_cols=139  Identities=17%  Similarity=0.221  Sum_probs=93.1

Q ss_pred             chHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHH-----HHHHHhcCChHHHHHHHHHHHHcCCCCCHH-H
Q 006615          136 VSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIV-----MSVYAKTGKNFEAVETFRQVIDEGAIPNSR-T  209 (638)
Q Consensus       136 ~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~l-----i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t  209 (638)
                      +...|..-++ +++.+..++|+.-|..+.+.|..    .|-.|     .....+.|+...|...|++.-.....|-.. -
T Consensus        58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g----~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd  132 (221)
T COG4649          58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYG----SYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRD  132 (221)
T ss_pred             chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCC----cchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhH
Confidence            3344555555 46778888999999998888733    34333     234667889999999999888765444432 1


Q ss_pred             HHHHHH--HHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH
Q 006615          210 YTVMIE--HLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM  279 (638)
Q Consensus       210 y~~li~--~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~  279 (638)
                      ..-|=.  .+...|.++......+-+...|-..-...-.+|--+-.+.|++..|...|..+....-.|....
T Consensus       133 ~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~aprnir  204 (221)
T COG4649         133 LARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPRNIR  204 (221)
T ss_pred             HHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcHHHH
Confidence            111112  2456788888888777776544333444556777777889999999999998887766676544

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=91.44  E-value=2  Score=35.66  Aligned_cols=58  Identities=12%  Similarity=-0.017  Sum_probs=32.3

Q ss_pred             HHhcCChHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCC
Q 006615          416 LARHGHVELVDRLIAKLRSDGMR--LPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGP  473 (638)
Q Consensus       416 ~~~~g~~~~a~~l~~~m~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~  473 (638)
                      ..+.|+++.|.+.|+.+...-..  -....--.++.+|.+.+++++|...+++..+.++.
T Consensus        20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~   79 (142)
T PF13512_consen   20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPT   79 (142)
T ss_pred             HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence            44566677777777666654221  12234444555666666666666666665555444

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=91.06  E-value=4.9  Score=35.33  Aligned_cols=63  Identities=17%  Similarity=0.170  Sum_probs=43.9

Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CHHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006615          138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLL--STESYNIVMSVYAKTGKNFEAVETFRQVID  200 (638)
Q Consensus       138 ~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  200 (638)
                      ..+..+...|++.|+.+.|.+.|.++.+....+  -...+-.+|....-.+++..+.....+...
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~  101 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES  101 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            346677788888888888888888877664333  234466677777777788777777666654

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.05  E-value=3.1  Score=38.60  Aligned_cols=96  Identities=15%  Similarity=0.181  Sum_probs=56.4

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCC-CHHHHHHHH
Q 006615          139 NFMNLMQWYSTSGDLELVLSTWNEYRQRA--KLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG-AIP-NSRTYTVMI  214 (638)
Q Consensus       139 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p-~~~ty~~li  214 (638)
                      .|+.-+.. .+.|++..|...|....+..  -.-...++-.|..++...|++++|...|..+.+.- -.| -+.++--|.
T Consensus       144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg  222 (262)
T COG1729         144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG  222 (262)
T ss_pred             HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence            36655553 35566777777777766552  01122334556777777777777777777776641 111 134455555


Q ss_pred             HHHHHcCCHHHHHHHHHhccc
Q 006615          215 EHLVNLGKLDSALEVFSALPL  235 (638)
Q Consensus       215 ~~~~~~g~~~~A~~~~~~m~~  235 (638)
                      ....+.|+.++|..+|+++.+
T Consensus       223 ~~~~~l~~~d~A~atl~qv~k  243 (262)
T COG1729         223 VSLGRLGNTDEACATLQQVIK  243 (262)
T ss_pred             HHHHHhcCHHHHHHHHHHHHH
Confidence            566667777777777776654

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=91.03  E-value=9.5  Score=32.91  Aligned_cols=131  Identities=16%  Similarity=0.152  Sum_probs=63.4

Q ss_pred             HHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCC
Q 006615          158 STWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMR  237 (638)
Q Consensus       158 ~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g  237 (638)
                      +....+.+.+++|+...|..+|+.+.+.|++.    .+.++...++-||.......+-.+..  ....+.++=-.|.+  
T Consensus        15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~----~L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLk--   86 (167)
T PF07035_consen   15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFS----QLHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLK--   86 (167)
T ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH----HHHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHH--
Confidence            34444555666666667777777777766544    33444445555565555544433322  12222222222221  


Q ss_pred             CccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHH
Q 006615          238 IKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLRE  301 (638)
Q Consensus       238 ~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~  301 (638)
                        .=...+..++..+...|++-+|+++.+......-.   ....++.+..+.++...-..+++-
T Consensus        87 --RL~~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~---~~~~fLeAA~~~~D~~lf~~V~~f  145 (167)
T PF07035_consen   87 --RLGTAYEEIIEVLLSKGQVLEALRYARQYHKVDSV---PARKFLEAAANSNDDQLFYAVFRF  145 (167)
T ss_pred             --HhhhhHHHHHHHHHhCCCHHHHHHHHHHcCCcccC---CHHHHHHHHHHcCCHHHHHHHHHH
Confidence              00113555666667777777777766654221111   122344555555554444444443

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.74  E-value=3.1  Score=38.57  Aligned_cols=100  Identities=11%  Similarity=-0.042  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHH
Q 006615          407 YALEKMLTILARHGHVELVDRLIAKLRSDGMRL--PFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYS  484 (638)
Q Consensus       407 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~  484 (638)
                      ..|+.-+. +.+.|++..|..-|...++....-  ....+--|..++...|++++|-.+|..+.+..+..++-.  .+.-
T Consensus       143 ~~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KAp--dall  219 (262)
T COG1729         143 KLYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAP--DALL  219 (262)
T ss_pred             HHHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCCh--HHHH
Confidence            35666554 445677888888888888765331  123333466777777777777777777776655544332  3555


Q ss_pred             HHHHHHHccCChHHHHHHHHHHHhC
Q 006615          485 SLLRTLTKCKRDFDAINVLEEMIFS  509 (638)
Q Consensus       485 ~li~~~~~~g~~~~A~~l~~~m~~~  509 (638)
                      -|.....+.|+.++|..+|++..+.
T Consensus       220 Klg~~~~~l~~~d~A~atl~qv~k~  244 (262)
T COG1729         220 KLGVSLGRLGNTDEACATLQQVIKR  244 (262)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            6666667777777777777777664

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=90.74  E-value=18  Score=35.53  Aligned_cols=128  Identities=13%  Similarity=0.041  Sum_probs=83.5

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHH
Q 006615          411 KMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTL  490 (638)
Q Consensus       411 ~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~  490 (638)
                      .-..++.+.|+..++-.+++.+-+....|+..    .+..+.+.|+.  +..-+++.+...  ..+||...+--.+..+-
T Consensus       268 ~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gdt--a~dRlkRa~~L~--slk~nnaes~~~va~aA  339 (531)
T COG3898         268 VAARALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARSGDT--ALDRLKRAKKLE--SLKPNNAESSLAVAEAA  339 (531)
T ss_pred             HHHHHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcCCCc--HHHHHHHHHHHH--hcCccchHHHHHHHHHH
Confidence            34567889999999999999998887666642    23334566652  222222222111  12566556666777777


Q ss_pred             HccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHH-HccCCHHHHHHHHHHHHhCCCCC
Q 006615          491 TKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHF-ALQGDEKIVQKLFSMVRQNGVEP  548 (638)
Q Consensus       491 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~-~~~g~~~~a~~l~~~m~~~~~~p  548 (638)
                      ...|++..|..--+....  ..|....|-.|.+.- +..|+-.++...+.+..+.--.|
T Consensus       340 lda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP  396 (531)
T COG3898         340 LDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP  396 (531)
T ss_pred             HhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence            888998887766655554  368888888777644 45599899988888777654333

>PRK15331 chaperone protein SicA; Provisional

Probab=90.55  E-value=2  Score=36.56  Aligned_cols=82  Identities=17%  Similarity=0.022  Sum_probs=32.6

Q ss_pred             cCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHH
Q 006615          220 LGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFL  299 (638)
Q Consensus       220 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~  299 (638)
                      .|++++|..+|+-+...+. -|..-|..|..++-..+++++|+..|......+...-...+.+-.++...|+.+.|..-|
T Consensus        50 ~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f  128 (165)
T PRK15331         50 QGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCF  128 (165)
T ss_pred             CCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHH
Confidence            4444444444444333221 122233334444444444444444444433322211112233344444444444444444


Q ss_pred             HHh
Q 006615          300 REM  302 (638)
Q Consensus       300 ~~~  302 (638)
                      ...
T Consensus       129 ~~a  131 (165)
T PRK15331        129 ELV  131 (165)
T ss_pred             HHH
Confidence            443

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=90.39  E-value=6.9  Score=31.73  Aligned_cols=91  Identities=14%  Similarity=0.049  Sum_probs=66.2

Q ss_pred             HHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHH---HHHHHHhcC
Q 006615           75 ALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN---LMQWYSTSG  151 (638)
Q Consensus        75 ~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~---ll~~~~~~g  151 (638)
                      ++...|+++.|++.|......-  +-....||.-..++.-.|+.++|.+-+++..+..-........+   -...|-..|
T Consensus        52 alaE~g~Ld~AlE~F~qal~l~--P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g  129 (175)
T KOG4555|consen   52 ALAEAGDLDGALELFGQALCLA--PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG  129 (175)
T ss_pred             HHHhccchHHHHHHHHHHHHhc--ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence            5678899999999999887542  23455899999999999999999998888765322223322222   334566778


Q ss_pred             CHHHHHHHHHHHHhcC
Q 006615          152 DLELVLSTWNEYRQRA  167 (638)
Q Consensus       152 ~~~~A~~l~~~m~~~~  167 (638)
                      +.+.|..=|+..-+.|
T Consensus       130 ~dd~AR~DFe~AA~LG  145 (175)
T KOG4555|consen  130 NDDAARADFEAAAQLG  145 (175)
T ss_pred             chHHHHHhHHHHHHhC
Confidence            8899998888877766

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.35  E-value=2.5  Score=39.74  Aligned_cols=108  Identities=21%  Similarity=0.141  Sum_probs=77.9

Q ss_pred             cCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcc
Q 006615          435 DGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPD  514 (638)
Q Consensus       435 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~  514 (638)
                      .|......+...++..-....+++.+..++-..+.....-..|+.  +-...+..|. .-+.++++.++..=+..|+-||
T Consensus        58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~--~~~~~irlll-ky~pq~~i~~l~npIqYGiF~d  134 (418)
T KOG4570|consen   58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW--TIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPD  134 (418)
T ss_pred             cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc--cHHHHHHHHH-ccChHHHHHHHhCcchhccccc
Confidence            455556667777777777778889988888776653322222221  1222333333 3467799999999999999999


Q ss_pred             hhhHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 006615          515 VQTFSGLMYHFALQGDEKIVQKLFSMVRQNG  545 (638)
Q Consensus       515 ~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~  545 (638)
                      .++++.+|+.+.+.+++.+|..+.-.|....
T Consensus       135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~qe  165 (418)
T KOG4570|consen  135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQE  165 (418)
T ss_pred             hhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            9999999999999999999998887777544

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=90.30  E-value=1.2  Score=28.47  Aligned_cols=27  Identities=11%  Similarity=0.085  Sum_probs=14.7

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 006615          140 FMNLMQWYSTSGDLELVLSTWNEYRQR  166 (638)
Q Consensus       140 ~~~ll~~~~~~g~~~~A~~l~~~m~~~  166 (638)
                      +..+..+|.+.|++++|.++|++..+.
T Consensus         4 ~~~la~~~~~~G~~~~A~~~~~~~l~~   30 (44)
T PF13428_consen    4 WLALARAYRRLGQPDEAERLLRRALAL   30 (44)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            444555555555555555555555554

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.17  E-value=29  Score=37.15  Aligned_cols=111  Identities=14%  Similarity=0.052  Sum_probs=78.6

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHH
Q 006615          405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYS  484 (638)
Q Consensus       405 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~  484 (638)
                      .--+.+.-+.-+...|+..+|.++-.+.+    .||-..|-.=+.+++..+++++-+++-+..+.          +..|.
T Consensus       683 ~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks----------PIGy~  748 (829)
T KOG2280|consen  683 VDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS----------PIGYL  748 (829)
T ss_pred             ccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC----------CCCch
Confidence            33445566667777888888887766654    46777777778888888888887777766432          14677


Q ss_pred             HHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHH
Q 006615          485 SLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLF  538 (638)
Q Consensus       485 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~  538 (638)
                      .....|.+.|+.++|.+.+-+...         +.-...+|.+.|++.+|.++-
T Consensus       749 PFVe~c~~~~n~~EA~KYiprv~~---------l~ekv~ay~~~~~~~eAad~A  793 (829)
T KOG2280|consen  749 PFVEACLKQGNKDEAKKYIPRVGG---------LQEKVKAYLRVGDVKEAADLA  793 (829)
T ss_pred             hHHHHHHhcccHHHHhhhhhccCC---------hHHHHHHHHHhccHHHHHHHH
Confidence            778888889998888887754432         114567788888887776654

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=90.01  E-value=0.01  Score=50.42  Aligned_cols=48  Identities=15%  Similarity=0.106  Sum_probs=18.8

Q ss_pred             HhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHH
Q 006615          113 AKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW  160 (638)
Q Consensus       113 ~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~  160 (638)
                      .+.+.+..+...++.+...+...+....+.++..|++.++.+...+++
T Consensus        18 ~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L   65 (143)
T PF00637_consen   18 EERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFL   65 (143)
T ss_dssp             TTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTT
T ss_pred             HhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHc
Confidence            333444444444444443332333334444444444444434444333

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=89.79  E-value=19  Score=34.46  Aligned_cols=222  Identities=12%  Similarity=0.052  Sum_probs=126.4

Q ss_pred             HcCCChhHHHHHHHHHHcCC-CCCCChh------HHHHHHHHHHhcC-ChHHHHHHHHHHHhC--------CCCCch---
Q 006615           77 RSAPNADSALSIMEALKSNP-NFSHNQS------TLHALATVLAKSQ-RNHELKTLIGDISSS--------KFLNVS---  137 (638)
Q Consensus        77 ~~~~~~~~Al~~~~~~~~~~-~~~~~~~------~~~~li~~~~~~~-~~~~a~~l~~~~~~~--------~~~~~~---  137 (638)
                      .+.|+.+.|..++.++.... ...|+..      .|+.- ..+...+ +++.|..++++..+-        ...++.   
T Consensus         4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G-~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el   82 (278)
T PF08631_consen    4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIG-KSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL   82 (278)
T ss_pred             hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHH-HHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence            46789999999999888543 3344321      22222 2233455 888887776654321        122332   


Q ss_pred             --HhHHHHHHHHHhcCCHH---HHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 006615          138 --VNFMNLMQWYSTSGDLE---LVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTV  212 (638)
Q Consensus       138 --~~~~~ll~~~~~~g~~~---~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~  212 (638)
                        .++..|+.+|...+..+   +|..+++.+.... +-....+-.-+..+.+.++.+++.+.+.+|...- .-....+..
T Consensus        83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~  160 (278)
T PF08631_consen   83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDS  160 (278)
T ss_pred             HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHH
Confidence              35667888888888665   4556666664432 2225566666777777899999999999999862 213445555


Q ss_pred             HHHHH---HHcCCHHHHHHHHHhcccCCCccCHh-HHH-HHHH-HH--HccC------CHHHHHHHHHHHHhC---CCCC
Q 006615          213 MIEHL---VNLGKLDSALEVFSALPLMRIKRTSK-QYL-ILVE-GF--VGVE------RFDEAKSLLNEMRDD---GKFP  275 (638)
Q Consensus       213 li~~~---~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~-~li~-~~--~~~g------~~~~A~~l~~~m~~~---g~~p  275 (638)
                      ++..+   .... ...|...++.+....+.|... ... .++. .+  .+.+      +++...++++...+.   .+.+
T Consensus       161 ~l~~i~~l~~~~-~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~  239 (278)
T PF08631_consen  161 ILHHIKQLAEKS-PELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSA  239 (278)
T ss_pred             HHHHHHHHHhhC-cHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCH
Confidence            55554   3333 355666666665544455443 111 1111 11  1111      245555556544332   2222


Q ss_pred             CHHH-H-HH----HHHHHHcCChHHHHHHHHHh
Q 006615          276 GRAM-R-VA----LERMQEMGFIQGANEFLREM  302 (638)
Q Consensus       276 ~~~~-~-~l----l~~~~~~g~~~~a~~~~~~~  302 (638)
                      .... . ++    ...+.+.+++++|.++|+--
T Consensus       240 ~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~a  272 (278)
T PF08631_consen  240 EAASAIHTLLWNKGKKHYKAKNYDEAIEWYELA  272 (278)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence            2211 1 22    35678899999999998743

It is also involved in sporulation [].

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=89.79  E-value=4.8  Score=39.54  Aligned_cols=94  Identities=10%  Similarity=0.102  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHH
Q 006615          208 RTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM--RVALER  285 (638)
Q Consensus       208 ~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~--~~ll~~  285 (638)
                      .++..|.-+|.+.+++..|.+.-++....+ ++|+-..--=-.++...|+++.|...|+++.+.  .|++-.  ..++..
T Consensus       258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l  334 (397)
T KOG0543|consen  258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKL  334 (397)
T ss_pred             HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHH
Confidence            356667777888888888888888877654 456666666677888888999999999888774  455433  233333


Q ss_pred             HHHcCCh-HHHHHHHHHhCc
Q 006615          286 MQEMGFI-QGANEFLREMLP  304 (638)
Q Consensus       286 ~~~~g~~-~~a~~~~~~~~~  304 (638)
                      -.+.... +...++|..|..
T Consensus       335 ~~k~~~~~~kekk~y~~mF~  354 (397)
T KOG0543|consen  335 KQKIREYEEKEKKMYANMFA  354 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHhh
Confidence            3333333 334667777753

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=89.57  E-value=4.5  Score=35.58  Aligned_cols=97  Identities=15%  Similarity=0.129  Sum_probs=68.4

Q ss_pred             HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCcc-CHhHHH--H
Q 006615          173 ESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPN--SRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKR-TSKQYL--I  247 (638)
Q Consensus       173 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~--~  247 (638)
                      ..+..+..-|++.|+.++|.+.|.++.+....|.  ...+-.+|+.....|++..+.....+....--.+ |...-|  .
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk  116 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK  116 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            4578889999999999999999999998755543  4456778888999999999888877765421111 122111  1


Q ss_pred             HHH--HHHccCCHHHHHHHHHHHH
Q 006615          248 LVE--GFVGVERFDEAKSLLNEMR  269 (638)
Q Consensus       248 li~--~~~~~g~~~~A~~l~~~m~  269 (638)
                      ...  .+...+++.+|-+.|-+..
T Consensus       117 ~~~gL~~l~~r~f~~AA~~fl~~~  140 (177)
T PF10602_consen  117 VYEGLANLAQRDFKEAAELFLDSL  140 (177)
T ss_pred             HHHHHHHHHhchHHHHHHHHHccC
Confidence            111  2334689999999888764

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=89.55  E-value=0.65  Score=29.70  Aligned_cols=33  Identities=18%  Similarity=0.168  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHHccCCC
Q 006615          574 ATKELLKKSLWKEGRRKEAAAVEERCEKINDVP  606 (638)
Q Consensus       574 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~  606 (638)
                      .++..+...|.+.|++++|++++++..+..+..
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~   34 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDD   34 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            357788999999999999999999999987543

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=89.36  E-value=0.75  Score=27.84  Aligned_cols=28  Identities=14%  Similarity=0.141  Sum_probs=23.5

Q ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHHc
Q 006615          575 TKELLKKSLWKEGRRKEAAAVEERCEKI  602 (638)
Q Consensus       575 ~~~~li~~~~~~g~~~~A~~~~~~~~~~  602 (638)
                      +|..|...|.+.|++++|++++++..+.
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4778999999999999999999996543

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=89.22  E-value=11  Score=30.79  Aligned_cols=64  Identities=19%  Similarity=0.277  Sum_probs=33.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 006615          209 TYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGK  273 (638)
Q Consensus       209 ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~  273 (638)
                      -+...++...+.|+-|.-.+++.++.+.+ +++....-.+..+|.+.|+..++.+++.+.-+.|+
T Consensus        88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~  151 (161)
T PF09205_consen   88 YVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL  151 (161)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence            34444555566666666666666654322 45555555566666666666666666666655554

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.05  E-value=38  Score=36.87  Aligned_cols=121  Identities=7%  Similarity=0.039  Sum_probs=67.9

Q ss_pred             CCHHHHHHHHHcCCChhHHHHHHHHHHcCCCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHH
Q 006615           67 LDPFIVTHALRSAPNADSALSIMEALKSNPNFSHN--QSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLM  144 (638)
Q Consensus        67 ~~~~~~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll  144 (638)
                      .+...-+..+.+...++-|+.+-+.-.    ..++  .........-|.+.|++++|...|-+-... +.|.     .++
T Consensus       335 k~le~kL~iL~kK~ly~~Ai~LAk~~~----~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi  404 (933)
T KOG2114|consen  335 KDLETKLDILFKKNLYKVAINLAKSQH----LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVI  404 (933)
T ss_pred             ccHHHHHHHHHHhhhHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHH
Confidence            344456777777777887777655432    2222  112222333345677787777666443321 1222     245


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHH
Q 006615          145 QWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQV  198 (638)
Q Consensus       145 ~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  198 (638)
                      .-|....+...--..++.+.+.|+. +...-..|+.+|.+.++.++-.++.+..
T Consensus       405 ~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~  457 (933)
T KOG2114|consen  405 KKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKC  457 (933)
T ss_pred             HHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcC
Confidence            5555555556666666777776643 3455566777777777766655555443

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=88.83  E-value=18  Score=32.80  Aligned_cols=223  Identities=17%  Similarity=0.121  Sum_probs=147.9

Q ss_pred             CCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCchHhHHHHHHHHHhcCCHHHHH
Q 006615           79 APNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS-KFLNVSVNFMNLMQWYSTSGDLELVL  157 (638)
Q Consensus        79 ~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~-~~~~~~~~~~~ll~~~~~~g~~~~A~  157 (638)
                      .+....+...+...............+......+...+.+..+...+...... ........+......+...++...+.
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (291)
T COG0457          36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL  115 (291)
T ss_pred             HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence            34555566666665543211112456777777788888888888888777652 23445555667777788888889999


Q ss_pred             HHHHHHHhcCCCCCHHhHHHHHH-HHHhcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHhcc
Q 006615          158 STWNEYRQRAKLLSTESYNIVMS-VYAKTGKNFEAVETFRQVIDEGA--IPNSRTYTVMIEHLVNLGKLDSALEVFSALP  234 (638)
Q Consensus       158 ~l~~~m~~~~~~p~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~--~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~  234 (638)
                      ..+.........+ ......... .+...|+++.|...|.+......  ......+......+...++.+.+...+....
T Consensus       116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  194 (291)
T COG0457         116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL  194 (291)
T ss_pred             HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence            9998888754333 222333333 78889999999999999855211  1233444444455677889999999998887


Q ss_pred             cCCCcc-CHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHhC
Q 006615          235 LMRIKR-TSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREML  303 (638)
Q Consensus       235 ~~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~~  303 (638)
                      ... .. ....+..+-..+...++++.|...+....................+...+..+.+...+....
T Consensus       195 ~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (291)
T COG0457         195 KLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKAL  263 (291)
T ss_pred             hhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHH
Confidence            642 22 366788888888888999999999988876543312233333344446777888888877764

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=88.71  E-value=20  Score=33.17  Aligned_cols=64  Identities=13%  Similarity=0.060  Sum_probs=46.4

Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 006615          520 GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERC  599 (638)
Q Consensus       520 ~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~  599 (638)
                      .+.+-|.+.|.+..|..-+++|.+. .+-+..                    ....+-.+..+|.+.|..++|.+.-+-+
T Consensus       172 ~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~--------------------~~eaL~~l~eaY~~lgl~~~a~~~~~vl  230 (254)
T COG4105         172 AIARYYLKRGAYVAAINRFEEVLEN-YPDTSA--------------------VREALARLEEAYYALGLTDEAKKTAKVL  230 (254)
T ss_pred             HHHHHHHHhcChHHHHHHHHHHHhc-cccccc--------------------hHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence            4456788899999999999999886 322222                    2334566888899999999999888776


Q ss_pred             HHccC
Q 006615          600 EKIND  604 (638)
Q Consensus       600 ~~~~~  604 (638)
                      ..-.+
T Consensus       231 ~~N~p  235 (254)
T COG4105         231 GANYP  235 (254)
T ss_pred             HhcCC
Confidence            65443

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=88.46  E-value=3.7  Score=38.73  Aligned_cols=78  Identities=18%  Similarity=0.296  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHh-----CCCCCCHhhHHH
Q 006615          481 LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQ-----NGVEPDAYMFKV  555 (638)
Q Consensus       481 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~-----~~~~p~~~~~~~  555 (638)
                      .++..++..+..+|+.+.+.+.++++.... +-|...|..+|.+|.+.|+...|...|+.+.+     .|+.|...+...
T Consensus       154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~  232 (280)
T COG3629         154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL  232 (280)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence            345555555555555555555555555542 22555555555555555555555555554433     455665555555


Q ss_pred             HHHH
Q 006615          556 LIQA  559 (638)
Q Consensus       556 li~~  559 (638)
                      ....
T Consensus       233 y~~~  236 (280)
T COG3629         233 YEEI  236 (280)
T ss_pred             HHHH
Confidence            5544

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.37  E-value=4.7  Score=38.01  Aligned_cols=92  Identities=17%  Similarity=0.170  Sum_probs=48.6

Q ss_pred             HHHHHcCCChhHHHHHHHHHHcCCC--CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhc
Q 006615           73 THALRSAPNADSALSIMEALKSNPN--FSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTS  150 (638)
Q Consensus        73 ~~~l~~~~~~~~Al~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~  150 (638)
                      +.......+++.+...+-.++.++.  ..|+. +-+++++.|.+ -+.+.+..++..-+.-|+-||..+++.+|+.+.+.
T Consensus        71 V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~  148 (418)
T KOG4570|consen   71 VDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKK  148 (418)
T ss_pred             hhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHHc-cChHHHHHHHhCcchhccccchhhHHHHHHHHHhc
Confidence            3333444556666666666654321  12221 23334443332 34445555655556666666666666666666666


Q ss_pred             CCHHHHHHHHHHHHhc
Q 006615          151 GDLELVLSTWNEYRQR  166 (638)
Q Consensus       151 g~~~~A~~l~~~m~~~  166 (638)
                      +++.+|..+.-.|...
T Consensus       149 ~n~~~aa~vvt~~~~q  164 (418)
T KOG4570|consen  149 ENYKDAASVVTEVMMQ  164 (418)
T ss_pred             ccHHHHHHHHHHHHHH
Confidence            6666666665555544

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=88.31  E-value=5  Score=30.53  Aligned_cols=75  Identities=8%  Similarity=0.181  Sum_probs=57.0

Q ss_pred             ChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHHhhhCCCC
Q 006615          495 RDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLM  570 (638)
Q Consensus       495 ~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~m~~~g~~  570 (638)
                      +.-++.+-++.+....+.|+.....+-++||.+..++..|.++|+-.+.+ ...+...|..+++-.--.+.+.|+.
T Consensus        22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lqeikp~l~ELGI~   96 (103)
T cd00923          22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQEIKPTLKELGIS   96 (103)
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHHHHhHHHHHHCCC
Confidence            33456666777777888999999999999999999999999999988853 2235557777776665556666653

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>PRK11906 transcriptional regulator; Provisional

Probab=88.21  E-value=20  Score=36.28  Aligned_cols=147  Identities=10%  Similarity=-0.028  Sum_probs=97.1

Q ss_pred             ChhHHHHHHHHHhcCCCCcCCHH-HHHHHHHHHHh---------cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHccc
Q 006615          385 SPETAWHFFCWVAYQPGYTHDVY-ALEKMLTILAR---------HGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGIS  454 (638)
Q Consensus       385 ~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~---------~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~  454 (638)
                      +.+.|+.+|.+........|+-. .|..+..++..         ..+..+|.++-++..+.+.. |......+..+....
T Consensus       273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~  351 (458)
T PRK11906        273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV-DGKILAIMGLITGLS  351 (458)
T ss_pred             HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhh
Confidence            45568888888875555666543 34433333322         12345677777777776644 777777777777888


Q ss_pred             CCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcch---hhHHHHHHHHHccCCH
Q 006615          455 KKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDV---QTFSGLMYHFALQGDE  531 (638)
Q Consensus       455 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~---~t~~~li~~~~~~g~~  531 (638)
                      ++++.|..+|++....     .||.+.+|......+.-+|+.++|.+.+++..+.  .|..   ...-..+..|+..+ +
T Consensus       352 ~~~~~a~~~f~rA~~L-----~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~~~~~~~~~~~~~~~-~  423 (458)
T PRK11906        352 GQAKVSHILFEQAKIH-----STDIASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKAVVIKECVDMYVPNP-L  423 (458)
T ss_pred             cchhhHHHHHHHHhhc-----CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHHHHHHHHHHHHcCCc-h
Confidence            8899999999998765     6666677777777778899999999999986653  3432   23333344666544 5


Q ss_pred             HHHHHHHHH
Q 006615          532 KIVQKLFSM  540 (638)
Q Consensus       532 ~~a~~l~~~  540 (638)
                      ++|..++-+
T Consensus       424 ~~~~~~~~~  432 (458)
T PRK11906        424 KNNIKLYYK  432 (458)
T ss_pred             hhhHHHHhh
Confidence            777776643

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=88.02  E-value=29  Score=34.18  Aligned_cols=209  Identities=15%  Similarity=0.090  Sum_probs=107.8

Q ss_pred             hhHHHHHHHHHHcCCCCCCChhHHHHHHHHH--HhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHH--HHhcCCHHHHH
Q 006615           82 ADSALSIMEALKSNPNFSHNQSTLHALATVL--AKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQW--YSTSGDLELVL  157 (638)
Q Consensus        82 ~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~--~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~--~~~~g~~~~A~  157 (638)
                      +..+...|+.-++..       .|..|-..+  ...|+-..|++.-.+-.+. +..|..-...|+.+  -.-.|+.+.|.
T Consensus        69 P~t~~Ryfr~rKRdr-------gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar  140 (531)
T COG3898          69 PYTARRYFRERKRDR-------GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDAR  140 (531)
T ss_pred             cHHHHHHHHHHHhhh-------HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHH
Confidence            344445555444333       344444444  2356666666665443211 11222223333332  23457888888


Q ss_pred             HHHHHHHhcCCCCCHH--hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhcc
Q 006615          158 STWNEYRQRAKLLSTE--SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIP-NSRTYTVMIEHLVNLGKLDSALEVFSALP  234 (638)
Q Consensus       158 ~l~~~m~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~~~~~m~  234 (638)
                      +-|+.|...   |...  -...|.-.--+.|..+.|...-++.-..  .| -......++...|..|+++.|.++++.-.
T Consensus       141 ~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~--Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~  215 (531)
T COG3898         141 KKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEK--APQLPWAARATLEARCAAGDWDGALKLVDAQR  215 (531)
T ss_pred             HHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhh--ccCCchHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence            888877643   1111  1222222334567777777666665553  23 34566677777888888888888877655


Q ss_pred             c-CCCccCHhH--HHHHHHHHHc---cCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHcCChHHHHHHHHHhCcC
Q 006615          235 L-MRIKRTSKQ--YLILVEGFVG---VERFDEAKSLLNEMRDDGKFPGRAM--RVALERMQEMGFIQGANEFLREMLPD  305 (638)
Q Consensus       235 ~-~g~~p~~~~--~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~~--~~ll~~~~~~g~~~~a~~~~~~~~~~  305 (638)
                      + .-+++|..-  -..|+.+-..   .-+...|...-.+..  .+.||.+-  ...-.++.+.|+..++-.+++.+.+.
T Consensus       216 ~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~--KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~  292 (531)
T COG3898         216 AAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEAN--KLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA  292 (531)
T ss_pred             HHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh--hcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc
Confidence            4 223444422  2233322211   233445554444333  34444432  23346677788888887777777544

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.80  E-value=22  Score=32.57  Aligned_cols=201  Identities=15%  Similarity=0.154  Sum_probs=101.6

Q ss_pred             HHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcC
Q 006615           72 VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSG  151 (638)
Q Consensus        72 ~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g  151 (638)
                      ...++..+.+++.|-..+....+.  ..-+...|++       ...++.|--+.+++.+.  +--+..|+--...|..+|
T Consensus        37 AAvafRnAk~feKakdcLlkA~~~--yEnnrslfhA-------AKayEqaamLake~~kl--sEvvdl~eKAs~lY~E~G  105 (308)
T KOG1585|consen   37 AAVAFRNAKKFEKAKDCLLKASKG--YENNRSLFHA-------AKAYEQAAMLAKELSKL--SEVVDLYEKASELYVECG  105 (308)
T ss_pred             HHHHHHhhccHHHHHHHHHHHHHH--HHhcccHHHH-------HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHhC
Confidence            455677777788777766666521  1112222322       12244454555555442  222334566667788888


Q ss_pred             CHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHHcCCHHHH
Q 006615          152 DLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE-----GAIPNSRTYTVMIEHLVNLGKLDSA  226 (638)
Q Consensus       152 ~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~p~~~ty~~li~~~~~~g~~~~A  226 (638)
                      ..+.|-..+++.-+.                .++-++++|+++|.+-..-     ....-..-|..+-+.+.+...+++|
T Consensus       106 spdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Ea  169 (308)
T KOG1585|consen  106 SPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEA  169 (308)
T ss_pred             CcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHH
Confidence            887777666654321                1223344444444443221     0001112233344556666666666


Q ss_pred             HHHHHhcccCCC----ccCH-hHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC---CHHHH-HHHHHHHHcCChHHHHH
Q 006615          227 LEVFSALPLMRI----KRTS-KQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP---GRAMR-VALERMQEMGFIQGANE  297 (638)
Q Consensus       227 ~~~~~~m~~~g~----~p~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~~~-~ll~~~~~~g~~~~a~~  297 (638)
                      -..|.+-.....    -++. ..|-+.|-.+....++..|.+.+++--+.+-.-   +..+. .+|.+ ...|+.+++..
T Consensus       170 a~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~a-yd~gD~E~~~k  248 (308)
T KOG1585|consen  170 ATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTA-YDEGDIEEIKK  248 (308)
T ss_pred             HHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHH-hccCCHHHHHH
Confidence            555543221100    1111 235556667777788888888888754433222   22333 44444 45677777766


Q ss_pred             HHH
Q 006615          298 FLR  300 (638)
Q Consensus       298 ~~~  300 (638)
                      +..
T Consensus       249 vl~  251 (308)
T KOG1585|consen  249 VLS  251 (308)
T ss_pred             HHc
Confidence            653

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=87.52  E-value=1.3  Score=26.73  Aligned_cols=24  Identities=25%  Similarity=0.409  Sum_probs=13.7

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHH
Q 006615          175 YNIVMSVYAKTGKNFEAVETFRQV  198 (638)
Q Consensus       175 ~~~li~~~~~~g~~~~A~~~~~~m  198 (638)
                      |+.|...|.+.|++++|.++|++.
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~a   25 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQA   25 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHH
Confidence            455556666666666666666653

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=87.51  E-value=22  Score=34.55  Aligned_cols=91  Identities=15%  Similarity=0.053  Sum_probs=58.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhcccCCC-----ccCHhHHHHHHHHHHccCCHHHHHHHHHHH----HhCCCCCCHHH---
Q 006615          212 VMIEHLVNLGKLDSALEVFSALPLMRI-----KRTSKQYLILVEGFVGVERFDEAKSLLNEM----RDDGKFPGRAM---  279 (638)
Q Consensus       212 ~li~~~~~~g~~~~A~~~~~~m~~~g~-----~p~~~~~~~li~~~~~~g~~~~A~~l~~~m----~~~g~~p~~~~---  279 (638)
                      ++-.++...+.++++.+.|+...+..-     .....+|-.|-..|.+..|+++|.-+..+.    ...++.....-   
T Consensus       127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~  206 (518)
T KOG1941|consen  127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA  206 (518)
T ss_pred             hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence            455666666777777777776543110     112356888888889989988887665544    33444444332   


Q ss_pred             ---HHHHHHHHHcCChHHHHHHHHHh
Q 006615          280 ---RVALERMQEMGFIQGANEFLREM  302 (638)
Q Consensus       280 ---~~ll~~~~~~g~~~~a~~~~~~~  302 (638)
                         |.+-.++...|++..|.+..++.
T Consensus       207 ~~lyhmaValR~~G~LgdA~e~C~Ea  232 (518)
T KOG1941|consen  207 MSLYHMAVALRLLGRLGDAMECCEEA  232 (518)
T ss_pred             HHHHHHHHHHHHhcccccHHHHHHHH
Confidence               34456778888888888887765

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=86.95  E-value=62  Score=36.90  Aligned_cols=95  Identities=17%  Similarity=0.182  Sum_probs=58.8

Q ss_pred             CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhH----HHHHHHHHHccCCHHHH
Q 006615          186 GKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQ----YLILVEGFVGVERFDEA  261 (638)
Q Consensus       186 g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~----~~~li~~~~~~g~~~~A  261 (638)
                      +++++|+.-+.++.       ...|.-.++.--+.|.+.+|..++        .|+...    |.+..+-+.....+++|
T Consensus       894 ~ry~~AL~hLs~~~-------~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~A  958 (1265)
T KOG1920|consen  894 KRYEDALSHLSECG-------ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEA  958 (1265)
T ss_pred             HHHHHHHHHHHHcC-------ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHH
Confidence            45666766665553       223445555556677788887765        344444    34444444556777777


Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHhC
Q 006615          262 KSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREML  303 (638)
Q Consensus       262 ~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~~  303 (638)
                      --.|+..-+        +-..+.+|...|+|.+|..+-.++.
T Consensus       959 al~Ye~~Gk--------lekAl~a~~~~~dWr~~l~~a~ql~  992 (1265)
T KOG1920|consen  959 ALMYERCGK--------LEKALKAYKECGDWREALSLAAQLS  992 (1265)
T ss_pred             HHHHHHhcc--------HHHHHHHHHHhccHHHHHHHHHhhc
Confidence            777765522        1235777788888888888877764

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.86  E-value=10  Score=39.32  Aligned_cols=132  Identities=13%  Similarity=0.055  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHH
Q 006615          104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYA  183 (638)
Q Consensus       104 ~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~  183 (638)
                      .-+.++..+.+.|..++|+.+-         +|..   .-.....+.|+++.|.++..+..      +..-|..|-++..
T Consensus       616 ~rt~va~Fle~~g~~e~AL~~s---------~D~d---~rFelal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al  677 (794)
T KOG0276|consen  616 IRTKVAHFLESQGMKEQALELS---------TDPD---QRFELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAAL  677 (794)
T ss_pred             hhhhHHhHhhhccchHhhhhcC---------CChh---hhhhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHh
Confidence            4556777777777777666542         2322   12334457788888877765543      2556888888888


Q ss_pred             hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHH
Q 006615          184 KTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKS  263 (638)
Q Consensus       184 ~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~  263 (638)
                      ..+++..|.+.|.....         |..|+-.+...|+.+....+-....+.|.      .|.-.-+|...|+++++.+
T Consensus       678 ~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~------~N~AF~~~~l~g~~~~C~~  742 (794)
T KOG0276|consen  678 SAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK------NNLAFLAYFLSGDYEECLE  742 (794)
T ss_pred             hcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc------cchHHHHHHHcCCHHHHHH
Confidence            88888888888876654         55667777777777766555555555542      2333446667788888887


Q ss_pred             HHHHH
Q 006615          264 LLNEM  268 (638)
Q Consensus       264 l~~~m  268 (638)
                      ++.+-
T Consensus       743 lLi~t  747 (794)
T KOG0276|consen  743 LLIST  747 (794)
T ss_pred             HHHhc
Confidence            77553

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=86.85  E-value=21  Score=40.28  Aligned_cols=134  Identities=16%  Similarity=0.109  Sum_probs=86.2

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHh----HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006615          143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTES----YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLV  218 (638)
Q Consensus       143 ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~  218 (638)
                      .++.--+.|-+++|+.++        .|+...    |.+..+-+.+.+.+++|.-+|+..-+         ..--+.+|-
T Consensus       914 ~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~  976 (1265)
T KOG1920|consen  914 CKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYK  976 (1265)
T ss_pred             HHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHH
Confidence            334334555555555544        344444    44444555567788888877776543         234567888


Q ss_pred             HcCCHHHHHHHHHhcccCCCccCHhH--HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHH
Q 006615          219 NLGKLDSALEVFSALPLMRIKRTSKQ--YLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGAN  296 (638)
Q Consensus       219 ~~g~~~~A~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~  296 (638)
                      .+|++.+|..+..++..   ..|...  --.|+.-+...++.-+|-++..+..+.   |.    ..+..+++...|++|.
T Consensus       977 ~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~~----~av~ll~ka~~~~eAl 1046 (1265)
T KOG1920|consen  977 ECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---PE----EAVALLCKAKEWEEAL 1046 (1265)
T ss_pred             HhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---HH----HHHHHHhhHhHHHHHH
Confidence            89999999998888763   223332  256778888888888888888776542   11    2455677788888888


Q ss_pred             HHHHHhC
Q 006615          297 EFLREML  303 (638)
Q Consensus       297 ~~~~~~~  303 (638)
                      ++...-.
T Consensus      1047 rva~~~~ 1053 (1265)
T KOG1920|consen 1047 RVASKAK 1053 (1265)
T ss_pred             HHHHhcc
Confidence            8765543

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=86.38  E-value=4.7  Score=31.03  Aligned_cols=60  Identities=10%  Similarity=0.139  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH
Q 006615          120 ELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMS  180 (638)
Q Consensus       120 ~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~  180 (638)
                      +.++-++.+....+.|++.+..+.+++|-+.+++..|.++|+.++.+ +.+....|..+++
T Consensus        28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq   87 (108)
T PF02284_consen   28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ   87 (108)
T ss_dssp             HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred             HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence            45555666666666777777777777777777777777777766654 2222335665554

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=86.15  E-value=15  Score=30.59  Aligned_cols=76  Identities=17%  Similarity=0.107  Sum_probs=40.8

Q ss_pred             HHHcCCChhHHHHHHHHHHcCCCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhc
Q 006615           75 ALRSAPNADSALSIMEALKSNPNFSH-NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTS  150 (638)
Q Consensus        75 ~l~~~~~~~~Al~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~  150 (638)
                      ...+.|++++|.+.|+.+..+-++.+ ....--.++.++.+.+++++|...++++++........-|...+.+++..
T Consensus        19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~   95 (142)
T PF13512_consen   19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY   95 (142)
T ss_pred             HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence            34456677777777777665433322 23344556666666677777777666666533221122244445554433

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=86.11  E-value=6  Score=30.14  Aligned_cols=61  Identities=10%  Similarity=0.166  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH
Q 006615          119 HELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMS  180 (638)
Q Consensus       119 ~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~  180 (638)
                      -++++-++.+......|++.+..+-+++|-+.+++..|.++|+..+.+- ..+...|..+++
T Consensus        24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~lq   84 (103)
T cd00923          24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYILQ   84 (103)
T ss_pred             HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHHH
Confidence            3455555666666666766667777777777777777777777665431 123445555543

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.23  E-value=11  Score=39.02  Aligned_cols=130  Identities=17%  Similarity=0.161  Sum_probs=90.2

Q ss_pred             HHHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhc
Q 006615           71 IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTS  150 (638)
Q Consensus        71 ~~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~  150 (638)
                      -+.+-+.+.|..++|+++          .+|+..   -.....+.|+++.|.++..+..      +..-|..|-++..+.
T Consensus       619 ~va~Fle~~g~~e~AL~~----------s~D~d~---rFelal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~  679 (794)
T KOG0276|consen  619 KVAHFLESQGMKEQALEL----------STDPDQ---RFELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSA  679 (794)
T ss_pred             hHHhHhhhccchHhhhhc----------CCChhh---hhhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhc
Confidence            356667777777777654          222211   1223456788888888765433      345589999999999


Q ss_pred             CCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 006615          151 GDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF  230 (638)
Q Consensus       151 g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~  230 (638)
                      |++..|.+.|.+...         |..|+-.+...|+-+....+=...++.|..      |.-.-+|...|+++++.+++
T Consensus       680 ~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~------N~AF~~~~l~g~~~~C~~lL  744 (794)
T KOG0276|consen  680 GELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN------NLAFLAYFLSGDYEECLELL  744 (794)
T ss_pred             ccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc------chHHHHHHHcCCHHHHHHHH
Confidence            999999999876543         566777888888877666666666666642      34445677789999999888


Q ss_pred             Hhcc
Q 006615          231 SALP  234 (638)
Q Consensus       231 ~~m~  234 (638)
                      ..-.
T Consensus       745 i~t~  748 (794)
T KOG0276|consen  745 ISTQ  748 (794)
T ss_pred             HhcC
Confidence            7654

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=85.10  E-value=32  Score=32.52  Aligned_cols=140  Identities=8%  Similarity=0.112  Sum_probs=97.3

Q ss_pred             cCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHh--cCChHHHHHHHHHHHh-CCCCCchHhHHHHHHHHHhcCCHH
Q 006615           78 SAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAK--SQRNHELKTLIGDISS-SKFLNVSVNFMNLMQWYSTSGDLE  154 (638)
Q Consensus        78 ~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~--~~~~~~a~~l~~~~~~-~~~~~~~~~~~~ll~~~~~~g~~~  154 (638)
                      +..-..+|+.+|+.......+..|..+...+++....  ........++.+.+.. .+..++..+-..+++.+++.+++.
T Consensus       140 ~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~  219 (292)
T PF13929_consen  140 RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWN  219 (292)
T ss_pred             hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHH
Confidence            3445678899998554323466777788888888765  2244445555555553 345667777888999999999999


Q ss_pred             HHHHHHHHHHhc-CCCCCHHhHHHHHHHHHhcCChHHHHHHHHH-----HHHcCCCCCHHHHHHHHHHH
Q 006615          155 LVLSTWNEYRQR-AKLLSTESYNIVMSVYAKTGKNFEAVETFRQ-----VIDEGAIPNSRTYTVMIEHL  217 (638)
Q Consensus       155 ~A~~l~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-----m~~~g~~p~~~ty~~li~~~  217 (638)
                      .-.++++.-... +..-|...|..+|+...+.|+..-...+.++     +++.|+..+...-..+-..+
T Consensus       220 kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF  288 (292)
T PF13929_consen  220 KLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELF  288 (292)
T ss_pred             HHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHH
Confidence            999999887665 5556788899999999999998776666554     23445666665555554443

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=85.03  E-value=23  Score=30.20  Aligned_cols=52  Identities=17%  Similarity=0.048  Sum_probs=26.2

Q ss_pred             ccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhC
Q 006615          453 ISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFS  509 (638)
Q Consensus       453 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~  509 (638)
                      +.++.+++..+++.++-..+..+.   ..++..  ..+.+.|++.+|+++|+++.+.
T Consensus        22 ~~~~~~D~e~lL~ALrvLRP~~~e---~~~~~~--~l~i~r~~w~dA~rlLr~l~~~   73 (160)
T PF09613_consen   22 RLGDPDDAEALLDALRVLRPEFPE---LDLFDG--WLHIVRGDWDDALRLLRELEER   73 (160)
T ss_pred             ccCChHHHHHHHHHHHHhCCCchH---HHHHHH--HHHHHhCCHHHHHHHHHHHhcc
Confidence            445566666666655544222211   122222  2345666666666666666554

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=85.01  E-value=2.5  Score=24.92  Aligned_cols=31  Identities=16%  Similarity=0.176  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHHccC
Q 006615          574 ATKELLKKSLWKEGRRKEAAAVEERCEKIND  604 (638)
Q Consensus       574 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~  604 (638)
                      .+|..+..++...|++++|++.+++..+.++
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p   32 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDP   32 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence            5688899999999999999999999998764

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=84.86  E-value=5.7  Score=30.60  Aligned_cols=71  Identities=8%  Similarity=0.164  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHHhhhCCC
Q 006615          498 DAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNL  569 (638)
Q Consensus       498 ~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~m~~~g~  569 (638)
                      +..+-++.+....+.|+.....+.++||.+..++..|.++|+-++.+ ..+....|..+++-.--.+.+.||
T Consensus        28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lqElkPtl~ELGI   98 (108)
T PF02284_consen   28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQELKPTLEELGI   98 (108)
T ss_dssp             HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHHHHHHHHHHHT-
T ss_pred             HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHHHHhhHHHHhCC
Confidence            45566666777788999999999999999999999999999988864 233333777776655544555554

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=84.15  E-value=2.8  Score=24.56  Aligned_cols=31  Identities=16%  Similarity=0.203  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHHccC
Q 006615          574 ATKELLKKSLWKEGRRKEAAAVEERCEKIND  604 (638)
Q Consensus       574 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~  604 (638)
                      ..|..+...+.+.|++++|++.+++..+..+
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p   32 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDP   32 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence            4577889999999999999999999988764

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=83.57  E-value=72  Score=34.71  Aligned_cols=160  Identities=14%  Similarity=0.123  Sum_probs=91.5

Q ss_pred             HHHHHH-cCCChhHHHHHHHHHHcCCCCCCChh-----HHHHHHHHHHhcCChHHHHHHHHHHHh----CCCCCchHhHH
Q 006615           72 VTHALR-SAPNADSALSIMEALKSNPNFSHNQS-----TLHALATVLAKSQRNHELKTLIGDISS----SKFLNVSVNFM  141 (638)
Q Consensus        72 ~~~~l~-~~~~~~~Al~~~~~~~~~~~~~~~~~-----~~~~li~~~~~~~~~~~a~~l~~~~~~----~~~~~~~~~~~  141 (638)
                      +...|. ...+++.|...+++...... +++..     .-..+++.+.+.+... |...+++..+    .+..+-...|.
T Consensus        65 la~iL~~eT~n~~~Ae~~L~k~~~l~~-~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~fr  142 (608)
T PF10345_consen   65 LASILLEETENLDLAETYLEKAILLCE-RHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFR  142 (608)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHH
Confidence            344444 66789999999987753211 12211     1233455555555444 8887777553    22223333444


Q ss_pred             HH-HHHHHhcCCHHHHHHHHHHHHhcC---CCCCHHhHHHHHHHHH--hcCChHHHHHHHHHHHHcCC---------CCC
Q 006615          142 NL-MQWYSTSGDLELVLSTWNEYRQRA---KLLSTESYNIVMSVYA--KTGKNFEAVETFRQVIDEGA---------IPN  206 (638)
Q Consensus       142 ~l-l~~~~~~g~~~~A~~l~~~m~~~~---~~p~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~---------~p~  206 (638)
                      -+ +..+...++...|.+.++.+...-   ..|-+..+-.++.+..  +.+..+++.+.++++.....         .|-
T Consensus       143 ll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~q  222 (608)
T PF10345_consen  143 LLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQ  222 (608)
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHH
Confidence            44 333334479999999988776432   2344555556665544  45666778888877744221         235


Q ss_pred             HHHHHHHHHHHH--HcCCHHHHHHHHHhc
Q 006615          207 SRTYTVMIEHLV--NLGKLDSALEVFSAL  233 (638)
Q Consensus       207 ~~ty~~li~~~~--~~g~~~~A~~~~~~m  233 (638)
                      ..+|..+++.++  ..|+++.+...++++
T Consensus       223 L~~~~lll~l~~~l~~~~~~~~~~~L~~l  251 (608)
T PF10345_consen  223 LKALFLLLDLCCSLQQGDVKNSKQKLKQL  251 (608)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            667777777655  567766666655543

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=83.36  E-value=2.6  Score=26.14  Aligned_cols=32  Identities=25%  Similarity=0.309  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHHHHccC
Q 006615          573 AATKELLKKSLWKEGRRKEAAAVEERCEKIND  604 (638)
Q Consensus       573 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~  604 (638)
                      ..+++.|...|...|++++|.+++++..+..-
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~   33 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIRE   33 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHH
Confidence            35788999999999999999999999887543

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=82.11  E-value=54  Score=35.11  Aligned_cols=17  Identities=6%  Similarity=-0.103  Sum_probs=9.5

Q ss_pred             hcCChHHHHHHHHHHHh
Q 006615          114 KSQRNHELKTLIGDISS  130 (638)
Q Consensus       114 ~~~~~~~a~~l~~~~~~  130 (638)
                      ...+.+.|...++...+
T Consensus       261 ~~~d~e~a~~~l~~aa~  277 (552)
T KOG1550|consen  261 VTQDLESAIEYLKLAAE  277 (552)
T ss_pred             ccccHHHHHHHHHHHHH
Confidence            44556666666655544

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=81.98  E-value=42  Score=30.85  Aligned_cols=117  Identities=17%  Similarity=0.110  Sum_probs=58.2

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHc
Q 006615          175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVG  254 (638)
Q Consensus       175 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~  254 (638)
                      |.---.+|-...++++|...+.+..+. .+-|..-|..       ...++.|--+.++|.+.  .--+.-|+--...|..
T Consensus        34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhA-------AKayEqaamLake~~kl--sEvvdl~eKAs~lY~E  103 (308)
T KOG1585|consen   34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA-------AKAYEQAAMLAKELSKL--SEVVDLYEKASELYVE  103 (308)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH-------HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHH
Confidence            444445566667777777766655431 2222222211       22345555555555432  1112335566667777


Q ss_pred             cCCHHHHHHHHHHHHh--CCCCCCHHH--H-HHHHHHHHcCChHHHHHHHHH
Q 006615          255 VERFDEAKSLLNEMRD--DGKFPGRAM--R-VALERMQEMGFIQGANEFLRE  301 (638)
Q Consensus       255 ~g~~~~A~~l~~~m~~--~g~~p~~~~--~-~ll~~~~~~g~~~~a~~~~~~  301 (638)
                      +|..+.|-..+++.-+  .++.|+...  | ..+......++...|.+++..
T Consensus       104 ~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk  155 (308)
T KOG1585|consen  104 CGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGK  155 (308)
T ss_pred             hCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence            7777777666665522  345555432  3 334444444555555555443

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=81.14  E-value=41  Score=30.26  Aligned_cols=200  Identities=16%  Similarity=0.113  Sum_probs=140.0

Q ss_pred             HHHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHH-HHHh
Q 006615           71 IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQ-WYST  149 (638)
Q Consensus        71 ~~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~-~~~~  149 (638)
                      .....+...+.+..+...+...............+..........+....+...+.........+. ........ .+..
T Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  142 (291)
T COG0457          64 LLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLALGALYE  142 (291)
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHHHHHHH
Confidence            356677788899999998888774211233444666677777788888999999988887543331 22223333 7889


Q ss_pred             cCCHHHHHHHHHHHHhcCC--CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 006615          150 SGDLELVLSTWNEYRQRAK--LLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSAL  227 (638)
Q Consensus       150 ~g~~~~A~~l~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~  227 (638)
                      .|+++.|...|++......  ......+......+...++.+.+...+..............+..+-..+...++.+.|.
T Consensus       143 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  222 (291)
T COG0457         143 LGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEAL  222 (291)
T ss_pred             cCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHH
Confidence            9999999999999865321  12344445555557788999999999999988522113677888888899999999999


Q ss_pred             HHHHhcccCCCccC-HhHHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 006615          228 EVFSALPLMRIKRT-SKQYLILVEGFVGVERFDEAKSLLNEMRDDGK  273 (638)
Q Consensus       228 ~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~  273 (638)
                      ..+......  .|+ ...+..+...+...+..+++...+.+......
T Consensus       223 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (291)
T COG0457         223 EYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALELDP  267 (291)
T ss_pred             HHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence            999988764  233 34445455555577789999988888766543

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=80.54  E-value=27  Score=32.68  Aligned_cols=18  Identities=22%  Similarity=0.259  Sum_probs=9.7

Q ss_pred             HHHHHHccCCHHHHHHHH
Q 006615          521 LMYHFALQGDEKIVQKLF  538 (638)
Q Consensus       521 li~~~~~~g~~~~a~~l~  538 (638)
                      +|..+-+.|.+.+|+.+.
T Consensus       131 li~l~y~~~~YsdalalI  148 (421)
T COG5159         131 LIYLLYKTGKYSDALALI  148 (421)
T ss_pred             HHHHHHhcccHHHHHHHH
Confidence            445555556665555543

>PF13762 MNE1: Mitochondrial splicing apparatus component

Probab=80.04  E-value=35  Score=28.67  Aligned_cols=81  Identities=10%  Similarity=0.193  Sum_probs=50.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCC-----CCCHHhHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006615          140 FMNLMQWYSTSGDLELVLSTWNEYRQRAK-----LLSTESYNIVMSVYAKTGK-NFEAVETFRQVIDEGAIPNSRTYTVM  213 (638)
Q Consensus       140 ~~~ll~~~~~~g~~~~A~~l~~~m~~~~~-----~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~ty~~l  213 (638)
                      .|+++.-....+++...+.+++.+.....     ..+..+|++++.+..+..- --.+..+|.-|++.+.+++..-|..+
T Consensus        42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l  121 (145)
T PF13762_consen   42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL  121 (145)
T ss_pred             HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence            56667666677777777777766632210     1234567777777755554 33456667777766677777777777


Q ss_pred             HHHHHHc
Q 006615          214 IEHLVNL  220 (638)
Q Consensus       214 i~~~~~~  220 (638)
                      |+++.+-
T Consensus       122 i~~~l~g  128 (145)
T PF13762_consen  122 IKAALRG  128 (145)
T ss_pred             HHHHHcC
Confidence            7766543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	638
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-07
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	3e-09
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	4e-05
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	6e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.4 bits (148), Expect = 6e-10
 Identities = 69/509 (13%), Positives = 147/509 (28%), Gaps = 159/509 (31%)

Query: 42  LIDSIRLAVRSNSSNS------LSSLLND-RLLDPFIVT-----HALRSAPNADSALSIM 89
           L+  I+   R  S  +         L ND ++   + V+       LR A         +
Sbjct: 94  LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA---------L 144

Query: 90  EALKSNPNFSHNQSTLHALA----TVLAKSQ-RNHELKTL---------IGDISSSKFL- 134
             L+   N       +  +     T +A     +++++           + + +S + + 
Sbjct: 145 LELRPAKNV-----LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199

Query: 135 ----NVSVNFM-NLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYN---IVMS-VYAKT 185
                +      N       S +++L + +     +R  LL ++ Y    +V+  V    
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR--LLKSKPYENCLLVLLNVQ--- 254

Query: 186 GKNFEAVETF------------RQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFS-- 231
             N +A   F            +QV D   +  + T  + ++H       D    +    
Sbjct: 255 --NAKAWNAFNLSCKILLTTRFKQVTD--FLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310

Query: 232 ------ALP---------------------LMRIKR----TSKQYLILVEGFVGVERFDE 260
                  LP                     L            +   ++E  + V    E
Sbjct: 311 LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE 370

Query: 261 AKSLLNEM---RDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDG 317
            + + + +         P   + +    + +   +   N+  +  L +K+ K        
Sbjct: 371 YRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS 430

Query: 318 SDDDEDENDDNNSGV--RI--AYGVQ--------LKPWLDP----------KALANTLDE 355
              +     +N   +   I   Y +         + P+LD           K + +  + 
Sbjct: 431 IYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP-ER 489

Query: 356 WSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVA--------YQ-------P 400
            +     +  D +F     L  K +RH     TAW+    +         Y+       P
Sbjct: 490 MT-LFRMVFLDFRF-----LEQK-IRH---DSTAWNASGSILNTLQQLKFYKPYICDNDP 539

Query: 401 GYTHDVYALEKML----TILARHGHVELV 425
            Y   V A+   L      L    + +L+
Sbjct: 540 KYERLVNAILDFLPKIEENLICSKYTDLL 568

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.5 bits (143), Expect = 3e-09
 Identities = 98/648 (15%), Positives = 184/648 (28%), Gaps = 195/648 (30%)

Query: 6   FLPAVILSKAFTQLQTRSFVRAPFTNKLALYLRRAQLIDSIRLAVRSNSSNSLSSLLNDR 65
           F  A +    F     +   ++  + +          ID I       S +++S     R
Sbjct: 25  FEDAFV--DNFDCKDVQDMPKSILSKEE---------IDHI-----IMSKDAVSGT--LR 66

Query: 66  LLDPFIVTHALRSAPNADSALSIMEALKSNPNF----SHNQSTLHALATVLAKSQRNHEL 121
           L         L S         + E L+ N  F       +    ++ T +   QR+   
Sbjct: 67  LFW------TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR-- 118

Query: 122 KTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIV--M 179
             L  D       NVS               L+  L    + RQ    L      ++  +
Sbjct: 119 --LYNDNQVFAKYNVS--------------RLQPYL----KLRQALLELRPAKNVLIDGV 158

Query: 180 SVYAKTGKNFEAVETFRQVIDEGAIP---------NSRTYTVMIEHLVNL-----GKLDS 225
                +GK + A++       +  +          N  +   ++E L  L         S
Sbjct: 159 ---LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215

Query: 226 ALEVFSALPL------MRIKR--TSKQY----LIL--VEGFVGVERFD-EAKSLLNEMRD 270
             +  S + L        ++R   SK Y    L+L  V+       F+   K LL   R 
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT-RF 274

Query: 271 ----DGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDEND 326
               D         ++L+                                      DE  
Sbjct: 275 KQVTDFLSAATTTHISLDHHSM-TL-----------------------------TPDE-- 302

Query: 327 DNNSGVRIAYGVQLKPWLD--PKALANTLDEWSPEVVSLLA----DAKFVWT-------- 372
                      + LK +LD  P+ L   +   +P  +S++A    D    W         
Sbjct: 303 --------VKSLLLK-YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD 353

Query: 373 --TRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIA 430
             T ++   L   +  E    F     + P      +    +L+++        V  ++ 
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRLSVFPP----SAHIPTILLSLIWFDVIKSDVMVVVN 409

Query: 431 KLRSDGM--RLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLR 488
           KL    +  + P  +   I   Y   K       A H  R++   +  + +   +     
Sbjct: 410 KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH--RSI---VDHYNIPKTF----- 459

Query: 489 TLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHF-ALQGDEKIVQKLFSM------- 540
                  D      L++  +S I           +H   ++  E++   LF M       
Sbjct: 460 ----DSDDL-IPPYLDQYFYSHI----------GHHLKNIEHPERM--TLFRMVFLDFRF 502

Query: 541 ----VRQNGVEPDA--YMFKVLIQ--AYCKYLSNSNLMPDAATKELLK 580
               +R +    +A   +   L Q   Y  Y+ +++   +     +L 
Sbjct: 503 LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD 550

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.8 bits (123), Expect = 6e-07
 Identities = 76/579 (13%), Positives = 150/579 (25%), Gaps = 194/579 (33%)

Query: 81  NADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKT--------LIGDISSSK 132
             D      +A   N +            ++L+K + +H + +         +     SK
Sbjct: 18  YKDILSVFEDAFVDNFDCKD---VQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSK 74

Query: 133 FLNVSVNFMN--LMQWYSTSGDLELVLSTW-NEYRQRAKLLSTESYNIVMSVYAKTGKNF 189
              +   F+   L   Y      + ++S    E RQ +  + T  Y        +  + +
Sbjct: 75  QEEMVQKFVEEVLRINY------KFLMSPIKTEQRQPS--MMTRMYI------EQRDRLY 120

Query: 190 EAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILV 249
              + F +            Y V         KL  AL        + ++       +L+
Sbjct: 121 NDNQVFAK------------YNVSRLQPYL--KLRQAL--------LELRPAKN---VLI 155

Query: 250 EGFVGVERFDEAKSLL--NEMRDDG---KFPGRA--MRVALERMQEMGFIQGANEFLREM 302
           +G +G       K+ +  +         K   +   + +          ++   + L ++
Sbjct: 156 DGVLGS-----GKTWVALDVCLSYKVQCKMDFKIFWLNLK-NCNSPETVLEMLQKLLYQI 209

Query: 303 LPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDE-WSPEVV 361
            P     N     D S + +       + +R      LK       L   L    + +  
Sbjct: 210 DP-----NWTSRSDHSSNIKLRIHSIQAELRR----LLKSKPYENCLL-VLLNVQNAKAW 259

Query: 362 SLLADAKFVWTTRLVCKVL---RH-----FKSPETAWHFFCWVAYQPGYTHDVYALEKML 413
               +A F     L CK+L   R      F S  T  H      +    T D     ++ 
Sbjct: 260 ----NA-F----NLSCKILLTTRFKQVTDFLSAATTTHISL-DHHSMTLTPD-----EVK 304

Query: 414 TILARHGHVELVDRLIAKLRSDGMRL-PFSTIRLIIDFYGISKKADAALKAFHDDRTLCG 472
           ++L +      +D     L  + +   P   + +I           A             
Sbjct: 305 SLLLK-----YLDCRPQDLPREVLTTNPR-RLSII-----------AESIRDGLAT---- 343

Query: 473 PISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYH-FA-LQGD 530
                   +    L   +         +NVLE         + +     M+   +     
Sbjct: 344 --WDNWKHVNCDKLTTIIESS------LNVLEP-------AEYRK----MFDRLSVFPPS 384

Query: 531 EKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWKEGRRK 590
             I   L S+                                          +W +  + 
Sbjct: 385 AHIPTILLSL------------------------------------------IWFDVIKS 402

Query: 591 EAAAVEERCEKINDVPSLALRGHIWAVSSADLTRVHSIY 629
           +   V  +  K     SL  +       S     + SIY
Sbjct: 403 DVMVVVNKLHK----YSLVEK---QPKES--TISIPSIY 432

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 59.1 bits (141), Expect = 3e-09
 Identities = 32/236 (13%), Positives = 67/236 (28%), Gaps = 22/236 (9%)

Query: 62  LNDRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHEL 121
                +        +        AL+    ++           L        +S    +L
Sbjct: 36  TQQMRMQRLKAKLQMPFQSGEFKALTRRLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQL 95

Query: 122 KTLIGDISSSKFLNV----------------SVNFMNLMQWYSTSGDLELVLSTWNEYRQ 165
             L+ +      L+V                    +   +    +  L L       +  
Sbjct: 96  ARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHG 155

Query: 166 RAK---LLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGK 222
           + +   LL+ + YN VM  +A+ G   E V     V D G  P+  +Y   ++ +    +
Sbjct: 156 QRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQ 215

Query: 223 LDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRA 278
               +E    L  M  +    Q L         +R       +++++     P + 
Sbjct: 216 DAGTIERC--LEQMSQEGLKLQALFTAVLLSEEDR-ATVLKAVHKVKPTFSLPPQL 268

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 46.0 bits (107), Expect = 4e-05
 Identities = 12/68 (17%), Positives = 26/68 (38%)

Query: 495 RDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFK 554
                + V         +  +  ++ +M  +A QG  K +  +  MV+  G+ PD   + 
Sbjct: 145 LAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204

Query: 555 VLIQAYCK 562
             +Q   +
Sbjct: 205 AALQCMGR 212

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 42.1 bits (97), Expect = 6e-04
 Identities = 15/143 (10%), Positives = 49/143 (34%), Gaps = 2/143 (1%)

Query: 421 HVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLM 480
            +++      +     +      +        ++ +   A               K   +
Sbjct: 107 SLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQ-RQKRKLLTL 165

Query: 481 LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQG-DEKIVQKLFS 539
            +Y++++    +     + + VL  +  +G+ PD+ +++  +     Q  D   +++   
Sbjct: 166 DMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLE 225

Query: 540 MVRQNGVEPDAYMFKVLIQAYCK 562
            + Q G++  A    VL+    +
Sbjct: 226 QMSQEGLKLQALFTAVLLSEEDR 248

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	638
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	100.0
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	99.98
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.95
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.95
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.89
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.87
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.87
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.87
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.84
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.8
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.8
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.79
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.78
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.77
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.76
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.74
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.73
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.71
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.71
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.71
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.7
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.69
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.69
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.68
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.66
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.66
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.66
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.65
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.65
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.65
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.64
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.62
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.59
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.51
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.47
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.46
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.46
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.43
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.4
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.4
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.38
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.38
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.38
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.37
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.37
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.37
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.36
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.35
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.35
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.35
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.34
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.34
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.32
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.28
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.27
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.27
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.27
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.26
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.24
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.23
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.2
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.19
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.19
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.19
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.18
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.17
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.17
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.16
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.16
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.15
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.1
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.09
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.09
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.08
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.07
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.06
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.06
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.04
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	98.98
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.96
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.94
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	98.93
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	98.92
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.89
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.89
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	98.87
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.77
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.75
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.69
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.68
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.66
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.64
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.6
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.6
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.56
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.55
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.55
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.54
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.54
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.53
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.5
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.5
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.5
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.49
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.48
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.48
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.47
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.43
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.41
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.41
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.41
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.4
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.39
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.38
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.36
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.36
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.3
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.3
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.3
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.29
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.29
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.29
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.24
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.22
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.22
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.2
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.19
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.18
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.17
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.17
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.16
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.16
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.15
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.13
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.11
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.1
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.1
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.1
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.09
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.06
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.04
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.03
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.02
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.01
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.0
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	97.98
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	97.97
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	97.97
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.96
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	97.94
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	97.91
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	97.9
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	97.89
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.88
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	97.87
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	97.87
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	97.86
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	97.84
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	97.83
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	97.82
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	97.81
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	97.81
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	97.8
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	97.8
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	97.79
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	97.75
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	97.75
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	97.74
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	97.74
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	97.71
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	97.69
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	97.69
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	97.65
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	97.56
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.5
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.5
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	97.49
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	97.49
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.45
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.41
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	97.41
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	97.41
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	97.4
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.4
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	97.36
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.36
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.33
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.33
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.32
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.29
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.23
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.22
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.22
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.2
1klx_A	138	Cysteine rich protein B; structural genomics, heli	96.95
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	96.92
1klx_A	138	Cysteine rich protein B; structural genomics, heli	96.92
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	96.87
2l6j_A	111	TPR repeat-containing protein associated with HSP;	96.86
2kat_A	115	Uncharacterized protein; NESG, structure, structur	96.78
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	96.64
2kat_A	115	Uncharacterized protein; NESG, structure, structur	96.62
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	96.52
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	96.5
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.49
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	96.46
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	96.41
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	96.32
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.12
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	96.1
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.01
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	95.89
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	95.81
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	95.62
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	95.56
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	95.44
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	95.03
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	93.97
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	93.94
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	93.9
1pc2_A	152	Mitochondria fission protein; unknown function; NM	93.63
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	93.57
1pc2_A	152	Mitochondria fission protein; unknown function; NM	93.43
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	93.36
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	92.12
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	91.97
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	91.96
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	91.66
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	91.56
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	88.93
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	88.88
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	88.77
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	88.44
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	88.36
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	88.29
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	86.48
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	85.4
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	85.37
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	84.3
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	83.94
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	83.31
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	83.3
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	83.19
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	82.95
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	82.25
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	81.4

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=9.2e-36  Score=321.50  Aligned_cols=437  Identities=12%  Similarity=-0.025  Sum_probs=364.5

Q ss_pred             HHHHHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHH
Q 006615           69 PFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYS  148 (638)
Q Consensus        69 ~~~~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~  148 (638)
                      +..++..+.+.|++++|+.+|+.+..   ..|+..++..++.+|.+.|++++|..+|+.+...  +++..+++.++.+|.
T Consensus        87 ~~~~~~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~  161 (597)
T 2xpi_A           87 LRLWRHDALMQQQYKCAAFVGEKVLD---ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLV  161 (597)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH---HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCchHHHHHHHHHHh---hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHH
Confidence            34578899999999999999999984   3567789999999999999999999999988653  578889999999999


Q ss_pred             hcCCHHHHHHHHHHH-Hhc--------------CCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH--
Q 006615          149 TSGDLELVLSTWNEY-RQR--------------AKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYT--  211 (638)
Q Consensus       149 ~~g~~~~A~~l~~~m-~~~--------------~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~--  211 (638)
                      +.|++++|..+|+++ ...              +.+++..+|+.++.+|.+.|++++|.++|++|.+.+.. +...+.  
T Consensus       162 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l  240 (597)
T 2xpi_A          162 KLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQL  240 (597)
T ss_dssp             HTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred             HHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHH
Confidence            999999999999953 222              23446889999999999999999999999999986422 333333  


Q ss_pred             ------------------------------------HHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHcc
Q 006615          212 ------------------------------------VMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGV  255 (638)
Q Consensus       212 ------------------------------------~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~  255 (638)
                                                          .++..|.+.|++++|.++|+++.+.  .++..+|+.++.+|.+.
T Consensus       241 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~  318 (597)
T 2xpi_A          241 VSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVR  318 (597)
T ss_dssp             HHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHT
T ss_pred             HHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHh
Confidence                                                2355667889999999999999865  58999999999999999


Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCCCcccc
Q 006615          256 ERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIA  335 (638)
Q Consensus       256 g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (638)
                      |++++|.++|+++.+.+......+..++..+.+.|++++|.++++++....                             
T Consensus       319 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----------------------------  369 (597)
T 2xpi_A          319 SRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-----------------------------  369 (597)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----------------------------
T ss_pred             cCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-----------------------------
Confidence            999999999999987765444455688899999999999999999884211                             


Q ss_pred             ccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHH
Q 006615          336 YGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTI  415 (638)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~  415 (638)
                                                     +........++..+...|++++|.+.|+.+....  +.+..+|+.++.+
T Consensus       370 -------------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~  416 (597)
T 2xpi_A          370 -------------------------------PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD--PQFGPAWIGFAHS  416 (597)
T ss_dssp             -------------------------------TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred             -------------------------------cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence                                           0011122346778888999999999999886432  3367899999999


Q ss_pred             HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCC
Q 006615          416 LARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKR  495 (638)
Q Consensus       416 ~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  495 (638)
                      |.+.|++++|.++|+++.+.+. .+..++..++.+|.+.|++++|.++|+++.+..     |+...+|+.++..|.+.|+
T Consensus       417 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~  490 (597)
T 2xpi_A          417 FAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-----QYDPLLLNELGVVAFNKSD  490 (597)
T ss_dssp             HHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHTTC
T ss_pred             HHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHhCC
Confidence            9999999999999999987754 377889999999999999999999999988753     2234789999999999999


Q ss_pred             hHHHHHHHHHHHhC----CCCcc--hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHHhhhCCC
Q 006615          496 DFDAINVLEEMIFS----GIVPD--VQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNL  569 (638)
Q Consensus       496 ~~~A~~l~~~m~~~----g~~p~--~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~m~~~g~  569 (638)
                      +++|.++|++|.+.    +..|+  ..+|+.+..+|.+.|++++|.+.|+++.+.+                        
T Consensus       491 ~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------------------------  546 (597)
T 2xpi_A          491 MQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS------------------------  546 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------------------------
T ss_pred             HHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------------------------
Confidence            99999999999876    67787  6799999999999999999999999988753                        


Q ss_pred             CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHccCC
Q 006615          570 MPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDV  605 (638)
Q Consensus       570 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~  605 (638)
                      ..+..+|..+..+|.+.|++++|.+.++++.+.++.
T Consensus       547 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~  582 (597)
T 2xpi_A          547 TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN  582 (597)
T ss_dssp             SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence            236788999999999999999999999999998753

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=7e-33  Score=298.93  Aligned_cols=457  Identities=10%  Similarity=-0.055  Sum_probs=330.4

Q ss_pred             HcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHH
Q 006615           77 RSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV  156 (638)
Q Consensus        77 ~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A  156 (638)
                      ...|.+..+...+..+.     .++...|+.++..+.+.|++++|..+|+++..  ..|+..++..++.+|.+.|++++|
T Consensus        64 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A  136 (597)
T 2xpi_A           64 STDGSFLKERNAQNTDS-----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARA  136 (597)
T ss_dssp             -----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             cccCccCCCCCccccch-----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHH
Confidence            34555555555554332     24667899999999999999999999999985  347778899999999999999999


Q ss_pred             HHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHc---------------CCCCCHHHHHHHHHHHHHcC
Q 006615          157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE---------------GAIPNSRTYTVMIEHLVNLG  221 (638)
Q Consensus       157 ~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------------g~~p~~~ty~~li~~~~~~g  221 (638)
                      ..+|+++...  +++..+++.++.+|.+.|++++|.++|+++...               |..++..+|+.++.+|.+.|
T Consensus       137 ~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  214 (597)
T 2xpi_A          137 KCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLS  214 (597)
T ss_dssp             HHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcC
Confidence            9999988653  578999999999999999999999999953221               33446899999999999999


Q ss_pred             CHHHHHHHHHhcccCCCcc-CHhHHH--------------------------------------HHHHHHHccCCHHHHH
Q 006615          222 KLDSALEVFSALPLMRIKR-TSKQYL--------------------------------------ILVEGFVGVERFDEAK  262 (638)
Q Consensus       222 ~~~~A~~~~~~m~~~g~~p-~~~~~~--------------------------------------~li~~~~~~g~~~~A~  262 (638)
                      ++++|.++|++|.+.+  | +...+.                                      .++..|.+.|++++|.
T Consensus       215 ~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~  292 (597)
T 2xpi_A          215 NFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAE  292 (597)
T ss_dssp             CHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHH
Confidence            9999999999998743  3 233333                                      3355666778888888


Q ss_pred             HHHHHHHhCCCCCCHHHH-HHHHHHHHcCChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCCCcccccccccc
Q 006615          263 SLLNEMRDDGKFPGRAMR-VALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLK  341 (638)
Q Consensus       263 ~l~~~m~~~g~~p~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (638)
                      ++|+++.+.  .++..++ .+...+.+.|++++|.++|+++.....                                  
T Consensus       293 ~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----------------------------------  336 (597)
T 2xpi_A          293 DYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP----------------------------------  336 (597)
T ss_dssp             HHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----------------------------------
T ss_pred             HHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCc----------------------------------
Confidence            888887654  3455544 777888888888888888887742211                                  


Q ss_pred             CCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCC
Q 006615          342 PWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGH  421 (638)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~  421 (638)
                                                ........++..+...|++++|.++|+.+....  +.+..+|+.+..+|.+.|+
T Consensus       337 --------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~  388 (597)
T 2xpi_A          337 --------------------------YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH--PEKAVTWLAVGIYYLCVNK  388 (597)
T ss_dssp             --------------------------TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSHHHHHHHHHHHHHTTC
T ss_pred             --------------------------ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHhcc
Confidence                                      011122345556667788888888888775322  4467778888888888888


Q ss_pred             hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHH
Q 006615          422 VELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAIN  501 (638)
Q Consensus       422 ~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~  501 (638)
                      +++|.++|+++.+.... +..+|+.++.+|.+.|++++|.++|+++.+..     |+...+|+.++.+|.+.|++++|.+
T Consensus       389 ~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~  462 (597)
T 2xpi_A          389 ISEARRYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-----QGTHLPYLFLGMQHMQLGNILLANE  462 (597)
T ss_dssp             HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-----TTCSHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----ccchHHHHHHHHHHHHcCCHHHHHH
Confidence            88888888888765432 56788888888888888888888888877642     2223678888888888888888888


Q ss_pred             HHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHHhhhCCCCCC--HHHHHHH
Q 006615          502 VLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPD--AATKELL  579 (638)
Q Consensus       502 l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~m~~~g~~p~--~~~~~~l  579 (638)
                      +|++|.+.. +.+..+|+.++..|.+.|++++|.++|+++.+..                   .+.+..|+  ..+|..+
T Consensus       463 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------------------~~~~~~p~~~~~~~~~l  522 (597)
T 2xpi_A          463 YLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLV-------------------KKTQSNEKPWAATWANL  522 (597)
T ss_dssp             HHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------------------HHSCCCSGGGHHHHHHH
T ss_pred             HHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhh-------------------hccccchhhHHHHHHHH
Confidence            888887653 2367778888888888888888888888877531                   12244666  6789999


Q ss_pred             HHHHhccCcHHHHHHHHHHHHHccCCCCcccccceee-eeccccchhccccccccc
Q 006615          580 KKSLWKEGRRKEAAAVEERCEKINDVPSLALRGHIWA-VSSADLTRVHSIYRNSIT  634 (638)
Q Consensus       580 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~w~-~~~~~~~~~~~~~~~~~~  634 (638)
                      +.+|.+.|++++|.++++++.+.++..+......+.. ...++.+++...|++++.
T Consensus       523 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~  578 (597)
T 2xpi_A          523 GHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLA  578 (597)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence            9999999999999999999999874322111111111 246777788777776653

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=100.00  E-value=9e-32  Score=278.06  Aligned_cols=182  Identities=17%  Similarity=0.194  Sum_probs=127.4

Q ss_pred             HHHHHHHHHHhCCCCCch-HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCC---------hH
Q 006615          120 ELKTLIGDISSSKFLNVS-VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGK---------NF  189 (638)
Q Consensus       120 ~a~~l~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~---------~~  189 (638)
                      .+..+.+.+.+.+..+.+ .+++.+|++|++.|++++|+++|++|.+.|+.||..+||+||.+|++.+.         ++
T Consensus         8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~   87 (501)
T 4g26_A            8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS   87 (501)
T ss_dssp             ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred             hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence            445556666666654433 35778888888888888888888888888888888888888888877654         57


Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHH
Q 006615          190 EAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMR  269 (638)
Q Consensus       190 ~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~  269 (638)
                      +|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..|||+||.+|++.|++++|.++|++|.
T Consensus        88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~  167 (501)
T 4g26_A           88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV  167 (501)
T ss_dssp             HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence            78888888888888888888888888888888888888888888888888888888888888888888888888888887


Q ss_pred             hCCCCCCHHHH-HHHHHHHHcCChHHHHHHHHH
Q 006615          270 DDGKFPGRAMR-VALERMQEMGFIQGANEFLRE  301 (638)
Q Consensus       270 ~~g~~p~~~~~-~ll~~~~~~g~~~~a~~~~~~  301 (638)
                      +.|+.||..+| .+|.+|++.|++++|.+++++
T Consensus       168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~  200 (501)
T 4g26_A          168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQR  200 (501)
T ss_dssp             HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence            77665544433 333333333333333333333

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=99.98  E-value=1.8e-31  Score=275.78  Aligned_cols=204  Identities=12%  Similarity=0.090  Sum_probs=178.0

Q ss_pred             HHHHHHHHHHcCCCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCC---------H
Q 006615           84 SALSIMEALKSNPNFSHN-QSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGD---------L  153 (638)
Q Consensus        84 ~Al~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~---------~  153 (638)
                      .+..+.+.+.+. +..+. ...++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+.         +
T Consensus         8 ~~e~L~~~~~~k-~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l   86 (501)
T 4g26_A            8 PSENLSRKAKKK-AIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL   86 (501)
T ss_dssp             -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred             hHHHHHHHHHHh-cccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence            344555666655 34443 346899999999999999999999999999999999999999999998764         7


Q ss_pred             HHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhc
Q 006615          154 ELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL  233 (638)
Q Consensus       154 ~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m  233 (638)
                      +.|.++|++|...|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|
T Consensus        87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M  166 (501)
T 4g26_A           87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM  166 (501)
T ss_dssp             HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHH
Q 006615          234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRV-ALERMQE  288 (638)
Q Consensus       234 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~-ll~~~~~  288 (638)
                      .+.|+.||..||++||.+|++.|++++|.++|++|.+.|..|+..|+. ++..|+.
T Consensus       167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s  222 (501)
T 4g26_A          167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS  222 (501)
T ss_dssp             HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred             HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999994 5555554

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.95  E-value=8.1e-24  Score=214.92  Aligned_cols=363  Identities=11%  Similarity=0.003  Sum_probs=291.2

Q ss_pred             HHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcC
Q 006615           72 VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSG  151 (638)
Q Consensus        72 ~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g  151 (638)
                      +...+.+.|++++|++.++.+.+..  +.+...+..+...+...|++++|...++...+.. +.+...|..+...|.+.|
T Consensus         5 ~a~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g   81 (388)
T 1w3b_A            5 LAHREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERG   81 (388)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCC
Confidence            3456778899999999998887543  2344466677777888899999999998877653 556778899999999999


Q ss_pred             CHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHH
Q 006615          152 DLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPN-SRTYTVMIEHLVNLGKLDSALEVF  230 (638)
Q Consensus       152 ~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~~~  230 (638)
                      ++++|...|+++...+ +.+..+|..+..++.+.|++++|.+.|+++.+.  .|+ ...+..+...+...|++++|.+.|
T Consensus        82 ~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~  158 (388)
T 1w3b_A           82 QLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACY  158 (388)
T ss_dssp             CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence            9999999999998764 445667999999999999999999999999885  354 456667777888889999999999


Q ss_pred             HhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHhCcCccccc
Q 006615          231 SALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKN  310 (638)
Q Consensus       231 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~  310 (638)
                      +++.+.. +.+..+|+.+...+.+.|++++|...|+++.+.+......++.+...+...|++++|...+++...      
T Consensus       159 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~------  231 (388)
T 1w3b_A          159 LKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS------  231 (388)
T ss_dssp             HHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH------
T ss_pred             HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------
Confidence            9887643 235678899999999999999999999999875433222334666777777777777777765521      


Q ss_pred             cccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChhHHH
Q 006615          311 VRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAW  390 (638)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  390 (638)
                                                                                                      
T Consensus       232 --------------------------------------------------------------------------------  231 (388)
T 1w3b_A          232 --------------------------------------------------------------------------------  231 (388)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhc
Q 006615          391 HFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL  470 (638)
Q Consensus       391 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~  470 (638)
                              ..  +.+..++..+..++.+.|++++|.+.|+++.+.+.. +..++..+..+|.+.|++++|...|+++.+.
T Consensus       232 --------~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  300 (388)
T 1w3b_A          232 --------LS--PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRL  300 (388)
T ss_dssp             --------HC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             --------hC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence                    11  225678888999999999999999999999987543 5778999999999999999999999998876


Q ss_pred             cCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006615          471 CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQN  544 (638)
Q Consensus       471 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~  544 (638)
                           .|+...+|+.+...+.+.|++++|.+.|+++.+.. +.+..++..+..+|.+.|++++|.+.|+++.+.
T Consensus       301 -----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  368 (388)
T 1w3b_A          301 -----CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI  368 (388)
T ss_dssp             -----CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred             -----CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence                 33345789999999999999999999999998752 335778999999999999999999999999874

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.95  E-value=8.8e-24  Score=214.66  Aligned_cols=364  Identities=15%  Similarity=0.060  Sum_probs=302.8

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCC
Q 006615          108 LATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGK  187 (638)
Q Consensus       108 li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~  187 (638)
                      +...+.+.|++++|...+..+.+.. +.+...+..+...+.+.|++++|...++...... +.+..+|+.+..++.+.|+
T Consensus         5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~   82 (388)
T 1w3b_A            5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ   82 (388)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence            3455678899999999999887653 3445567778888899999999999999888764 5678899999999999999


Q ss_pred             hHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccC-HhHHHHHHHHHHccCCHHHHHHHH
Q 006615          188 NFEAVETFRQVIDEGAIP-NSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRT-SKQYLILVEGFVGVERFDEAKSLL  265 (638)
Q Consensus       188 ~~~A~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~l~  265 (638)
                      +++|.+.|+++.+.  .| +..+|..+...+.+.|++++|.+.|+++.+.  .|+ ...+..+...+...|++++|.+.|
T Consensus        83 ~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~  158 (388)
T 1w3b_A           83 LQEAIEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACY  158 (388)
T ss_dssp             HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence            99999999999885  35 4667999999999999999999999998764  354 556777888899999999999999


Q ss_pred             HHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCCCccccccccccCCCC
Q 006615          266 NEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLD  345 (638)
Q Consensus       266 ~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (638)
                      +++..........+..+...+...|++++|...|+++...                                        
T Consensus       159 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----------------------------------------  198 (388)
T 1w3b_A          159 LKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL----------------------------------------  198 (388)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH----------------------------------------
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----------------------------------------
Confidence            9998764332234457778888999999999888876321                                        


Q ss_pred             hhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHH
Q 006615          346 PKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELV  425 (638)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a  425 (638)
                                                                            .  +.+...|..+...+...|++++|
T Consensus       199 ------------------------------------------------------~--p~~~~~~~~lg~~~~~~~~~~~A  222 (388)
T 1w3b_A          199 ------------------------------------------------------D--PNFLDAYINLGNVLKEARIFDRA  222 (388)
T ss_dssp             ------------------------------------------------------C--TTCHHHHHHHHHHHHTTTCTTHH
T ss_pred             ------------------------------------------------------C--CCcHHHHHHHHHHHHHcCCHHHH
Confidence                                                                  0  12456788888999999999999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHH
Q 006615          426 DRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEE  505 (638)
Q Consensus       426 ~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~  505 (638)
                      ...+++....... +..++..+..+|.+.|++++|...|+++.+.     .|+...+|..+...+.+.|++++|.+.|++
T Consensus       223 ~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  296 (388)
T 1w3b_A          223 VAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIEL-----QPHFPDAYCNLANALKEKGSVAEAEDCYNT  296 (388)
T ss_dssp             HHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----CSSCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             HHHHHHHHhhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            9999998876543 6788999999999999999999999998875     333346899999999999999999999999


Q ss_pred             HHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhc
Q 006615          506 MIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWK  585 (638)
Q Consensus       506 m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~m~~~g~~p~~~~~~~li~~~~~  585 (638)
                      +.+.. +.+..+|+.+...+...|++++|.+.++++.+.  .|+                      +..++..+...|.+
T Consensus       297 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~----------------------~~~~~~~l~~~~~~  351 (388)
T 1w3b_A          297 ALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEV--FPE----------------------FAAAHSNLASVLQQ  351 (388)
T ss_dssp             HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS--CTT----------------------CHHHHHHHHHHHHT
T ss_pred             HHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCC----------------------cHHHHHHHHHHHHH
Confidence            98863 457889999999999999999999999999864  222                      46778899999999


Q ss_pred             cCcHHHHHHHHHHHHHccC
Q 006615          586 EGRRKEAAAVEERCEKIND  604 (638)
Q Consensus       586 ~g~~~~A~~~~~~~~~~~~  604 (638)
                      .|++++|.+.++++.+..+
T Consensus       352 ~g~~~~A~~~~~~a~~~~p  370 (388)
T 1w3b_A          352 QGKLQEALMHYKEAIRISP  370 (388)
T ss_dssp             TTCCHHHHHHHHHHHTTCT
T ss_pred             cCCHHHHHHHHHHHHhhCC
Confidence            9999999999999998654

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.89  E-value=2.6e-20  Score=196.48  Aligned_cols=438  Identities=9%  Similarity=-0.027  Sum_probs=275.0

Q ss_pred             HHHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhc
Q 006615           71 IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTS  150 (638)
Q Consensus        71 ~~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~  150 (638)
                      .....+.+.|++++|+..|+.+.+..   |+...+..+..++...|++++|...++++.+.+ +.+...+..+..+|.+.
T Consensus        11 ~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~   86 (514)
T 2gw1_A           11 DKGNQFFRNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGL   86 (514)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHH
Confidence            34456667777888888887777543   566677777777777777777777777776643 34455677777777777


Q ss_pred             CCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc---CCHHHHH
Q 006615          151 GDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL---GKLDSAL  227 (638)
Q Consensus       151 g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~---g~~~~A~  227 (638)
                      |++++|...|+++...+ +++......++..+.+......+.+.+..+...+..|+...+..-.......   .....+.
T Consensus        87 g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (514)
T 2gw1_A           87 GKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMA  165 (514)
T ss_dssp             TCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHH
T ss_pred             hhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHH
Confidence            77777777777777665 3444555555555544444444444443332222222211111110000000   0111111


Q ss_pred             HHHHhcccCC------CccCHhHHHHHHHHHHc---cCCHHHHHHHHHHHHh-----CCCCCC-------H--HHHHHHH
Q 006615          228 EVFSALPLMR------IKRTSKQYLILVEGFVG---VERFDEAKSLLNEMRD-----DGKFPG-------R--AMRVALE  284 (638)
Q Consensus       228 ~~~~~m~~~g------~~p~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~-----~g~~p~-------~--~~~~ll~  284 (638)
                      ..+.......      -..+...+..+...+..   .|++++|..+|+++..     ..-.|+       .  ..+.+..
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (514)
T 2gw1_A          166 SFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGI  245 (514)
T ss_dssp             HHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHH
Confidence            1111111000      01113333333333333   6667777776666655     311221       1  1124455


Q ss_pred             HHHHcCChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHh
Q 006615          285 RMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLL  364 (638)
Q Consensus       285 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (638)
                      .+...|++++|...+++......                                                         
T Consensus       246 ~~~~~~~~~~A~~~~~~~l~~~~---------------------------------------------------------  268 (514)
T 2gw1_A          246 FKFLKNDPLGAHEDIKKAIELFP---------------------------------------------------------  268 (514)
T ss_dssp             HHHHSSCHHHHHHHHHHHHHHCC---------------------------------------------------------
T ss_pred             HHHHCCCHHHHHHHHHHHHhhCc---------------------------------------------------------
Confidence            56666777777766666532110                                                         


Q ss_pred             hcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 006615          365 ADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTI  444 (638)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~  444 (638)
                         . ......++..+...|++++|.+.|.......  +.+...+..+...+...|++++|...+++....... +...+
T Consensus       269 ---~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~  341 (514)
T 2gw1_A          269 ---R-VNSYIYMALIMADRNDSTEYYNYFDKALKLD--SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPY  341 (514)
T ss_dssp             ---C-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC--TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHH
T ss_pred             ---c-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC--cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHH
Confidence               0 1112234555566677777777776665433  335667888999999999999999999999887644 56788


Q ss_pred             HHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCC-Ccc----hhhHH
Q 006615          445 RLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGI-VPD----VQTFS  519 (638)
Q Consensus       445 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~  519 (638)
                      ..+...|...|++++|...++.+.+..+     +....|..+...+.+.|++++|.+.|+++.+... .++    ..+|.
T Consensus       342 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  416 (514)
T 2gw1_A          342 IQLACLAYRENKFDDCETLFSEAKRKFP-----EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLV  416 (514)
T ss_dssp             HHHHHHTTTTTCHHHHHHHHHHHHHHST-----TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHcc-----cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHH
Confidence            8999999999999999999999887532     2236889999999999999999999999877421 112    33889


Q ss_pred             HHHHHHHc---cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 006615          520 GLMYHFAL---QGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVE  596 (638)
Q Consensus       520 ~li~~~~~---~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~  596 (638)
                      .+...+..   .|++++|.+.++.+.+..  |+                      +..++..+...+.+.|++++|.+.+
T Consensus       417 ~l~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~----------------------~~~~~~~la~~~~~~g~~~~A~~~~  472 (514)
T 2gw1_A          417 GKATLLTRNPTVENFIEATNLLEKASKLD--PR----------------------SEQAKIGLAQMKLQQEDIDEAITLF  472 (514)
T ss_dssp             HHHHHHHTSCCTTHHHHHHHHHHHHHHHC--TT----------------------CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHhhhhhcCCHHHHHHHHHHHHHhC--cc----------------------cHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            99999999   999999999999988742  22                      4567788999999999999999999


Q ss_pred             HHHHHccCCC
Q 006615          597 ERCEKINDVP  606 (638)
Q Consensus       597 ~~~~~~~~~~  606 (638)
                      ++..+.++..
T Consensus       473 ~~a~~~~~~~  482 (514)
T 2gw1_A          473 EESADLARTM  482 (514)
T ss_dssp             HHHHHHCSSH
T ss_pred             HHHHHhcccc
Confidence            9999987533

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.87  E-value=3e-19  Score=185.04  Aligned_cols=325  Identities=13%  Similarity=0.045  Sum_probs=203.0

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH
Q 006615          101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMS  180 (638)
Q Consensus       101 ~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~  180 (638)
                      +...+..+...+.+.|++++|..+|+++.+.. +.+...+..+..+|.+.|++++|...|+++.+.+ +.+..+|..+..
T Consensus        25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~  102 (450)
T 2y4t_A           25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH  102 (450)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence            34456666666777777777777777666532 3455666667777777777777777777776654 334666777777


Q ss_pred             HHHhcCChHHHHHHHHHHHHcCCCCCH----HHHHHHH------------HHHHHcCCHHHHHHHHHhcccCCCccCHhH
Q 006615          181 VYAKTGKNFEAVETFRQVIDEGAIPNS----RTYTVMI------------EHLVNLGKLDSALEVFSALPLMRIKRTSKQ  244 (638)
Q Consensus       181 ~~~~~g~~~~A~~~~~~m~~~g~~p~~----~ty~~li------------~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~  244 (638)
                      +|.+.|++++|.+.|+++.+.  .|+.    .++..+.            ..+.+.|++++|.+.|+++.+.. +.+..+
T Consensus       103 ~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~  179 (450)
T 2y4t_A          103 LLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAEL  179 (450)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHH
Confidence            777777777777777777663  3432    3444443            33667777777777777766532 235666


Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHhCcCccccccccccCCCCCcccc
Q 006615          245 YLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDE  324 (638)
Q Consensus       245 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (638)
                      +..+..+|.+.|++++|.+.|+++.+........++.+...+...|++++|...++++.....                 
T Consensus       180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-----------------  242 (450)
T 2y4t_A          180 RELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-----------------  242 (450)
T ss_dssp             HHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------------
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----------------
Confidence            777777777777777777777777654322222334666667777777777777766531100                 


Q ss_pred             ccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcC
Q 006615          325 NDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTH  404 (638)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p  404 (638)
                                                                                  ....+...+..+       .
T Consensus       243 ------------------------------------------------------------~~~~~~~~~~~~-------~  255 (450)
T 2y4t_A          243 ------------------------------------------------------------DHKRCFAHYKQV-------K  255 (450)
T ss_dssp             ------------------------------------------------------------TCHHHHHHHHHH-------H
T ss_pred             ------------------------------------------------------------ChHHHHHHHHHH-------H
Confidence                                                                        000000000000       0


Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHH
Q 006615          405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLP----FSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLM  480 (638)
Q Consensus       405 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  480 (638)
                      ....+..+...|.+.|++++|..+|+++...... +    ...+..+..++.+.|++++|...++.+.+.     .|+..
T Consensus       256 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-----~p~~~  329 (450)
T 2y4t_A          256 KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM-----EPDNV  329 (450)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-----CTTCH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CcccH
Confidence            1112233477788888888888888888775432 2    346677778888888888888888887654     33334


Q ss_pred             HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcc-hhhHHHHH
Q 006615          481 LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPD-VQTFSGLM  522 (638)
Q Consensus       481 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~li  522 (638)
                      .+|..+..+|.+.|++++|.+.|+++.+.  .|+ ...+..+.
T Consensus       330 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~  370 (450)
T 2y4t_A          330 NALKDRAEAYLIEEMYDEAIQDYETAQEH--NENDQQIREGLE  370 (450)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcchHHHHHHHH
Confidence            67888888888888888888888888774  454 33444443

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.87  E-value=2.6e-19  Score=188.86  Aligned_cols=375  Identities=9%  Similarity=-0.051  Sum_probs=254.6

Q ss_pred             CCHHHHHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHH
Q 006615           67 LDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQW  146 (638)
Q Consensus        67 ~~~~~~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~  146 (638)
                      ..+..+..++...|++++|+..|+.+.+..  +.+...+..+..++...|++++|...|+++.+.+. ++......++..
T Consensus        40 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~  116 (514)
T 2gw1_A           40 VFYSNLSACYVSVGDLKKVVEMSTKALELK--PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLER  116 (514)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHH
T ss_pred             HHHHhHHHHHHHHhhHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHH
Confidence            345556788889999999999999998653  34556899999999999999999999999988653 344444555555


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCC--------------------------------------------CCHHhHHHHHHHH
Q 006615          147 YSTSGDLELVLSTWNEYRQRAKL--------------------------------------------LSTESYNIVMSVY  182 (638)
Q Consensus       147 ~~~~g~~~~A~~l~~~m~~~~~~--------------------------------------------p~~~~~~~li~~~  182 (638)
                      +.+......+.+.+..+...+..                                            .+...+......+
T Consensus       117 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (514)
T 2gw1_A          117 NLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSN  196 (514)
T ss_dssp             HHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHH
Confidence            55444444443333222211111                                            1133333333333


Q ss_pred             Hh---cCChHHHHHHHHHHHH-----cCCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHH
Q 006615          183 AK---TGKNFEAVETFRQVID-----EGAIP--------NSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYL  246 (638)
Q Consensus       183 ~~---~g~~~~A~~~~~~m~~-----~g~~p--------~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~  246 (638)
                      ..   .|++++|...|+++.+     ..-.|        +..++..+...+...|++++|.+.|+++.+..  |+..+|.
T Consensus       197 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~  274 (514)
T 2gw1_A          197 LYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYI  274 (514)
T ss_dssp             HSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHH
T ss_pred             HHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHH
Confidence            33   6777777777777766     21111        24455666666777777777777777766543  3366666


Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHhCcCccccccccccCCCCCcccccc
Q 006615          247 ILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDEND  326 (638)
Q Consensus       247 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (638)
                      .+...+...|++++|...++++...........+.+...+...|++++|...++...                       
T Consensus       275 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----------------------  331 (514)
T 2gw1_A          275 YMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAK-----------------------  331 (514)
T ss_dssp             HHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHH-----------------------
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH-----------------------
Confidence            677777777777777777777766544333344455566666666666666666542                       


Q ss_pred             CCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCH
Q 006615          327 DNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDV  406 (638)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~  406 (638)
                                                                                             ...  +.+.
T Consensus       332 -----------------------------------------------------------------------~~~--~~~~  338 (514)
T 2gw1_A          332 -----------------------------------------------------------------------ELD--PENI  338 (514)
T ss_dssp             -----------------------------------------------------------------------HTC--SSCS
T ss_pred             -----------------------------------------------------------------------HhC--hhhH
Confidence                                                                                   211  2245


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcch-hHHHHHHH
Q 006615          407 YALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKF-KLMLLYSS  485 (638)
Q Consensus       407 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~~  485 (638)
                      ..+..+...+...|++++|..+++++.+.... +..++..+...|.+.|++++|...++.+....+..... .....|..
T Consensus       339 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  417 (514)
T 2gw1_A          339 FPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVG  417 (514)
T ss_dssp             HHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHH
Confidence            57788888899999999999999998876533 56788888899999999999999999877642221110 00137888


Q ss_pred             HHHHHHc---cCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006615          486 LLRTLTK---CKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQN  544 (638)
Q Consensus       486 li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~  544 (638)
                      +...+..   .|++++|.+.|+++.+.. +.+..++..+...|.+.|++++|.+.|+++.+.
T Consensus       418 l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  478 (514)
T 2gw1_A          418 KATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADL  478 (514)
T ss_dssp             HHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            9999999   999999999999998753 235677888999999999999999999999875

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.87  E-value=5.6e-19  Score=182.96  Aligned_cols=313  Identities=13%  Similarity=0.068  Sum_probs=252.5

Q ss_pred             CCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006615          134 LNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVM  213 (638)
Q Consensus       134 ~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~l  213 (638)
                      +.+...+..+...|.+.|++++|..+|+++.+.. +.+..+|..+..++.+.|++++|.+.|+++.+.+. .+..++..+
T Consensus        23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l  100 (450)
T 2y4t_A           23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM-DFTAARLQR  100 (450)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CcHHHHHHH
Confidence            4566778899999999999999999999998864 55789999999999999999999999999998642 368889999


Q ss_pred             HHHHHHcCCHHHHHHHHHhcccCCCccC-H---hHHHHHHH------------HHHccCCHHHHHHHHHHHHhCCCCCCH
Q 006615          214 IEHLVNLGKLDSALEVFSALPLMRIKRT-S---KQYLILVE------------GFVGVERFDEAKSLLNEMRDDGKFPGR  277 (638)
Q Consensus       214 i~~~~~~g~~~~A~~~~~~m~~~g~~p~-~---~~~~~li~------------~~~~~g~~~~A~~l~~~m~~~g~~p~~  277 (638)
                      ...|.+.|++++|.+.|+++.+..  |+ .   ..|..+..            .+.+.|++++|...|+++.........
T Consensus       101 ~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~  178 (450)
T 2y4t_A          101 GHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAE  178 (450)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Confidence            999999999999999999998753  44 3   56665544            488899999999999998775433222


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCC
Q 006615          278 AMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWS  357 (638)
Q Consensus       278 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (638)
                      ..+.+...+.+.|++++|...++++...                                                    
T Consensus       179 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------------------------------------------------  206 (450)
T 2y4t_A          179 LRELRAECFIKEGEPRKAISDLKAASKL----------------------------------------------------  206 (450)
T ss_dssp             HHHHHHHHHHHTTCGGGGHHHHHHHHHH----------------------------------------------------
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHh----------------------------------------------------
Confidence            3346778888888888888888776311                                                    


Q ss_pred             HHHHHHhhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 006615          358 PEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGM  437 (638)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~  437 (638)
                                                                .  +.+..+|..+..+|...|++++|...|+++.....
T Consensus       207 ------------------------------------------~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p  242 (450)
T 2y4t_A          207 ------------------------------------------K--NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ  242 (450)
T ss_dssp             ------------------------------------------H--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             ------------------------------------------C--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence                                                      0  23677889999999999999999999999986643


Q ss_pred             CCCHHHHHHH------------HHHHcccCCHHHHHHHHHhchhccCCCcchh-HHHHHHHHHHHHHccCChHHHHHHHH
Q 006615          438 RLPFSTIRLI------------IDFYGISKKADAALKAFHDDRTLCGPISKFK-LMLLYSSLLRTLTKCKRDFDAINVLE  504 (638)
Q Consensus       438 ~~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~  504 (638)
                      . +...+..+            ...|.+.|++++|...|+.+.+..+.  .+. ....|..+...+.+.|++++|++.++
T Consensus       243 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  319 (450)
T 2y4t_A          243 D-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS--IAEYTVRSKERICHCFSKDEKPVEAIRVCS  319 (450)
T ss_dssp             T-CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS--SHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             C-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc--chHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            3 44444444            78899999999999999999876433  111 12578899999999999999999999


Q ss_pred             HHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhh
Q 006615          505 EMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYM  552 (638)
Q Consensus       505 ~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~  552 (638)
                      ++.+.. +.+..+|..+..+|...|++++|.+.++++.+  +.|+...
T Consensus       320 ~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~  364 (450)
T 2y4t_A          320 EVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQ  364 (450)
T ss_dssp             HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHH
T ss_pred             HHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcchHH
Confidence            998752 23678999999999999999999999999997  4566433

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.84  E-value=3.4e-18  Score=181.44  Aligned_cols=431  Identities=8%  Similarity=-0.030  Sum_probs=303.9

Q ss_pred             HHHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhc
Q 006615           71 IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTS  150 (638)
Q Consensus        71 ~~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~  150 (638)
                      .....+.+.|++++|+..|+.+.+..  +.+...+..+..++...|++++|...+++..+.. +.+...+..+...+.+.
T Consensus        30 ~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~  106 (537)
T 3fp2_A           30 NRGNHFFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESL  106 (537)
T ss_dssp             HHHHHHHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHc
Confidence            36678889999999999999998653  3456788999999999999999999999988754 45677788899999999


Q ss_pred             CCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCCCHHHHHHHHHHHHHcCCHH
Q 006615          151 GDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE------GAIPNSRTYTVMIEHLVNLGKLD  224 (638)
Q Consensus       151 g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~ty~~li~~~~~~g~~~  224 (638)
                      |++++|...|+.+ ...  |+  ..+..+..+...+....|.+.++++...      ...|+.    ..+..+....+.+
T Consensus       107 g~~~~A~~~~~~~-~~~--~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~  177 (537)
T 3fp2_A          107 GNFTDAMFDLSVL-SLN--GD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSN----TSLASFFGIFDSH  177 (537)
T ss_dssp             TCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCH----HHHHHHHHTSCHH
T ss_pred             CCHHHHHHHHHHH-hcC--CC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchH----hHHHHHHHhcChH
Confidence            9999999999744 222  22  2233355566667778899999998653      223343    3344455666777


Q ss_pred             HHHHHHHhcccCCCccCHh-HHHHHHHHHHcc--------CCHHHHHHHHHHHHhCCCCCCHH-------HHHHHHHHHH
Q 006615          225 SALEVFSALPLMRIKRTSK-QYLILVEGFVGV--------ERFDEAKSLLNEMRDDGKFPGRA-------MRVALERMQE  288 (638)
Q Consensus       225 ~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~--------g~~~~A~~l~~~m~~~g~~p~~~-------~~~ll~~~~~  288 (638)
                      .+...+......  .+... ....+...+...        |++++|..+|+++.+........       .+.+...+..
T Consensus       178 ~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~  255 (537)
T 3fp2_A          178 LEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFL  255 (537)
T ss_dssp             HHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHh
Confidence            766655554432  22211 333333333322        47888888888887654332221       2244566778


Q ss_pred             cCChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCC
Q 006615          289 MGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAK  368 (638)
Q Consensus       289 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (638)
                      .|++++|...++.......                                                            .
T Consensus       256 ~~~~~~A~~~~~~~~~~~~------------------------------------------------------------~  275 (537)
T 3fp2_A          256 KNNLLDAQVLLQESINLHP------------------------------------------------------------T  275 (537)
T ss_dssp             TTCHHHHHHHHHHHHHHCC------------------------------------------------------------C
T ss_pred             cccHHHHHHHHHHHHhcCC------------------------------------------------------------C
Confidence            8888999888887642110                                                            0


Q ss_pred             cccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006615          369 FVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLII  448 (638)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li  448 (638)
                       ......++..+...|++++|.+.|.......  +.+..+|..+...+...|++++|.+.+++....... +...+..+.
T Consensus       276 -~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la  351 (537)
T 3fp2_A          276 -PNSYIFLALTLADKENSQEFFKFFQKAVDLN--PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-NVYPYIQLA  351 (537)
T ss_dssp             -HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CSHHHHHHH
T ss_pred             -chHHHHHHHHHHHhcCHHHHHHHHHHHhccC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence             1122345666777888888888888876443  335778899999999999999999999999887643 557888899


Q ss_pred             HHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCC-----CcchhhHHHHHH
Q 006615          449 DFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGI-----VPDVQTFSGLMY  523 (638)
Q Consensus       449 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-----~p~~~t~~~li~  523 (638)
                      ..|...|++++|...++++.+..     |+....|..+...+.+.|++++|.+.|+++.+...     ......+..+..
T Consensus       352 ~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~  426 (537)
T 3fp2_A          352 CLLYKQGKFTESEAFFNETKLKF-----PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKAT  426 (537)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC-----TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHH
Confidence            99999999999999999988763     33346888999999999999999999999876421     111122344456


Q ss_pred             HHHcc----------CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHH
Q 006615          524 HFALQ----------GDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAA  593 (638)
Q Consensus       524 ~~~~~----------g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~  593 (638)
                      .+...          |++++|...|+++.+..  |+                      +...+..+...|.+.|++++|.
T Consensus       427 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p~----------------------~~~~~~~l~~~~~~~g~~~~A~  482 (537)
T 3fp2_A          427 ILARQSSQDPTQLDEEKFNAAIKLLTKACELD--PR----------------------SEQAKIGLAQLKLQMEKIDEAI  482 (537)
T ss_dssp             HHHHHHTC----CCHHHHHHHHHHHHHHHHHC--TT----------------------CHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHhhccchhhhHhHHHHHHHHHHHHHHhC--CC----------------------CHHHHHHHHHHHHHhccHHHHH
Confidence            67777          99999999999988742  22                      4567888999999999999999


Q ss_pred             HHHHHHHHccCCCCc
Q 006615          594 AVEERCEKINDVPSL  608 (638)
Q Consensus       594 ~~~~~~~~~~~~~~~  608 (638)
                      +.+++..+..+..+.
T Consensus       483 ~~~~~al~~~~~~~~  497 (537)
T 3fp2_A          483 ELFEDSAILARTMDE  497 (537)
T ss_dssp             HHHHHHHHHC--CHH
T ss_pred             HHHHHHHHhCCCcHH
Confidence            999999998764443

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.80  E-value=4.2e-20  Score=195.52  Aligned_cols=136  Identities=15%  Similarity=0.150  Sum_probs=105.5

Q ss_pred             CchHhHHHHHHHHHhcCCHHHHHHHHHHHH---hcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 006615          135 NVSVNFMNLMQWYSTSGDLELVLSTWNEYR---QRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYT  211 (638)
Q Consensus       135 ~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~---~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~  211 (638)
                      .-..|||+||++||+.|++++|.++|++|.   ..|+.||+.|||+||++||+.|++++|.++|++|.+.|+.||..|||
T Consensus       125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn  204 (1134)
T 3spa_A          125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA  204 (1134)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence            344578888888888888888888887765   34788888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHcCC-HHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 006615          212 VMIEHLVNLGK-LDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP  275 (638)
Q Consensus       212 ~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p  275 (638)
                      +||.++|+.|+ .++|.++|++|.+.|+.||..+|++++.+..+.    .+++..+++ ..+..|
T Consensus       205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p  264 (1134)
T 3spa_A          205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSL  264 (1134)
T ss_dssp             HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCC
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCC
Confidence            88888888887 467888888888888888888888888666554    333444443 334444

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.80  E-value=9.9e-16  Score=152.97  Aligned_cols=137  Identities=9%  Similarity=0.047  Sum_probs=94.5

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH------------HHHHHHcccCCHHHHHHHHHhchhccC
Q 006615          405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIR------------LIIDFYGISKKADAALKAFHDDRTLCG  472 (638)
Q Consensus       405 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~------------~li~~~~~~g~~~~A~~~~~~~~~~~~  472 (638)
                      +...+..+...+...|++++|...++...+.... +...+.            .+...+.+.|++++|...++.+.+..+
T Consensus       187 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~  265 (359)
T 3ieg_A          187 NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEP  265 (359)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence            4455666666667777777777777766654432 222222            225567788888888888888776543


Q ss_pred             CCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006615          473 PISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQN  544 (638)
Q Consensus       473 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~  544 (638)
                      ..+... ...|..+...+.+.|++++|.+.+++..+.. +.+..+|..+...|...|++++|.+.|+++.+.
T Consensus       266 ~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~  335 (359)
T 3ieg_A          266 SVAEYT-VRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH  335 (359)
T ss_dssp             SSHHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             CchHHH-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            321111 1346667788888999999999999888752 236778888888999999999999999988874

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.79  E-value=2.9e-17  Score=174.25  Aligned_cols=442  Identities=11%  Similarity=0.002  Sum_probs=304.5

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHH
Q 006615          103 STLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVY  182 (638)
Q Consensus       103 ~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~  182 (638)
                      ..+..+...+.+.|++++|...|+++.+.. +.+...+..+..+|.+.|++++|...|+++.+.+ +.+..+|..+..++
T Consensus        26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~  103 (537)
T 3fp2_A           26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN  103 (537)
T ss_dssp             HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence            457777888889999999999999988754 4567788889999999999999999999998875 45688889999999


Q ss_pred             HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCC--CccCHhHHHHHHHHHHccCCHHH
Q 006615          183 AKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMR--IKRTSKQYLILVEGFVGVERFDE  260 (638)
Q Consensus       183 ~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~  260 (638)
                      .+.|++++|.+.|+.+..   .|+.  ....+..+...+...+|.+.++++....  ..+........+..+....+.+.
T Consensus       104 ~~~g~~~~A~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (537)
T 3fp2_A          104 ESLGNFTDAMFDLSVLSL---NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL  178 (537)
T ss_dssp             HHHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHH
T ss_pred             HHcCCHHHHHHHHHHHhc---CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHH
Confidence            999999999999963322   2332  2233445666666788888888876531  01111122334455566666666


Q ss_pred             HHHHHHHHHhCCCCCCHHHH-HHHHHH---------HHcCChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCC
Q 006615          261 AKSLLNEMRDDGKFPGRAMR-VALERM---------QEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNS  330 (638)
Q Consensus       261 A~~l~~~m~~~g~~p~~~~~-~ll~~~---------~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (638)
                      +...+.+...  ..+....+ ..+..+         ...|++++|..+++.+...........                 
T Consensus       179 ~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~-----------------  239 (537)
T 3fp2_A          179 EVSSVNTSSN--YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLR-----------------  239 (537)
T ss_dssp             HHHTSCCCCS--SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHH-----------------
T ss_pred             HHHHHhhccc--cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhh-----------------
Confidence            6655443322  22222221 222211         223589999999998865443211000                 


Q ss_pred             CccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHH
Q 006615          331 GVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALE  410 (638)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~  410 (638)
                                                     .     .........+..+...|++++|.+.|......   .|+...+.
T Consensus       240 -------------------------------~-----~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~  280 (537)
T 3fp2_A          240 -------------------------------E-----NAALALCYTGIFHFLKNNLLDAQVLLQESINL---HPTPNSYI  280 (537)
T ss_dssp             -------------------------------H-----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCHHHHH
T ss_pred             -------------------------------H-----HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc---CCCchHHH
Confidence                                           0     00011233566777789999999999998654   45678888


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHH
Q 006615          411 KMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTL  490 (638)
Q Consensus       411 ~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~  490 (638)
                      .+...+...|++++|.+.+++....... +..++..+...|...|++++|...|+.+.+..     |+....|..+...+
T Consensus       281 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-----~~~~~~~~~la~~~  354 (537)
T 3fp2_A          281 FLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-----PENVYPYIQLACLL  354 (537)
T ss_dssp             HHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCSHHHHHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHH
Confidence            9999999999999999999999887643 67889999999999999999999999988763     33336899999999


Q ss_pred             HccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHHhhhCCCC
Q 006615          491 TKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLM  570 (638)
Q Consensus       491 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~m~~~g~~  570 (638)
                      .+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++++.+..  |+.                ....
T Consensus       355 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--~~~----------------~~~~  415 (537)
T 3fp2_A          355 YKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE--EVQ----------------EKIH  415 (537)
T ss_dssp             HHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHC----------------SSCS
T ss_pred             HHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--Ccc----------------hhhH
Confidence            99999999999999998863 3356688899999999999999999999988642  211                0111


Q ss_pred             CCHHHHHHHHHHHhcc----------CcHHHHHHHHHHHHHccCCCCcccccceee-eeccccchhccccccccc
Q 006615          571 PDAATKELLKKSLWKE----------GRRKEAAAVEERCEKINDVPSLALRGHIWA-VSSADLTRVHSIYRNSIT  634 (638)
Q Consensus       571 p~~~~~~~li~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~~w~-~~~~~~~~~~~~~~~~~~  634 (638)
                      .....+..+...+.+.          |++++|.+.+++..+..+..+.......+. ...++.+++...|++++.
T Consensus       416 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  490 (537)
T 3fp2_A          416 VGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI  490 (537)
T ss_dssp             STTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            1223344455667777          999999999999999865433222111111 246677777777776543

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.78  E-value=6.5e-19  Score=186.54  Aligned_cols=150  Identities=11%  Similarity=0.032  Sum_probs=129.9

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHHHH---hCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHH
Q 006615          102 QSTLHALATVLAKSQRNHELKTLIGDIS---SSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIV  178 (638)
Q Consensus       102 ~~~~~~li~~~~~~~~~~~a~~l~~~~~---~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~l  178 (638)
                      ..+|+++|.+|++.|++++|..+|+.|.   ..|+.||..|||+||.+||+.|++++|.++|++|.+.|+.||+.|||+|
T Consensus       127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL  206 (1134)
T 3spa_A          127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA  206 (1134)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence            4589999999999999999999998876   4589999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCh-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccC------HhHHHHHHHH
Q 006615          179 MSVYAKTGKN-FEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRT------SKQYLILVEG  251 (638)
Q Consensus       179 i~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~------~~~~~~li~~  251 (638)
                      |+++|+.|+. ++|.++|++|.+.|+.||..||++++.++.+.+-++.+.++.     .++.|+      ..+...|.+.
T Consensus       207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~-----P~f~p~~~~~~~~~t~~LL~dl  281 (1134)
T 3spa_A          207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVK-----PTFSLPPQLPPPVNTSKLLRDV  281 (1134)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGC-----CCCCCCCCCCCCCCCCTTTHHH
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhC-----cccCCCCCCcccccchHHHHHH
Confidence            9999999985 789999999999999999999999998887765554444433     334443      4556667788


Q ss_pred             HHccC
Q 006615          252 FVGVE  256 (638)
Q Consensus       252 ~~~~g  256 (638)
                      |.+.+
T Consensus       282 ~s~d~  286 (1134)
T 3spa_A          282 YAKDG  286 (1134)
T ss_dssp             HCCCS
T ss_pred             HccCC
Confidence            88765

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.77  E-value=3.4e-15  Score=149.04  Aligned_cols=107  Identities=11%  Similarity=-0.033  Sum_probs=79.7

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHH
Q 006615          411 KMLTILARHGHVELVDRLIAKLRSDGMRLPF----STIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSL  486 (638)
Q Consensus       411 ~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l  486 (638)
                      .+...+.+.|++++|.+.+++....... +.    ..+..+..+|.+.|++++|...++...+.     .|+...+|..+
T Consensus       239 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~  312 (359)
T 3ieg_A          239 ESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM-----EPDNVNALKDR  312 (359)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CcccHHHHHHH
Confidence            3466788889999999999988876543 23    23445677888999999999999988765     34335788899


Q ss_pred             HHHHHccCChHHHHHHHHHHHhCCCCcc-hhhHHHHHHHH
Q 006615          487 LRTLTKCKRDFDAINVLEEMIFSGIVPD-VQTFSGLMYHF  525 (638)
Q Consensus       487 i~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~  525 (638)
                      ...+.+.|++++|.+.|++..+.  .|+ ...+..+..+.
T Consensus       313 ~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~  350 (359)
T 3ieg_A          313 AEAYLIEEMYDEAIQDYEAAQEH--NENDQQIREGLEKAQ  350 (359)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHH
Confidence            99999999999999999999875  455 34444444443

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.76  E-value=8.6e-16  Score=151.57  Aligned_cols=285  Identities=11%  Similarity=0.002  Sum_probs=159.4

Q ss_pred             CchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006615          135 NVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMI  214 (638)
Q Consensus       135 ~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li  214 (638)
                      .+...+..+...+...|++++|..+|+++.+.+ +.+...+..++..+.+.|++++|..+++++.+... .+...+..+.
T Consensus        20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~   97 (330)
T 3hym_B           20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWFAVG   97 (330)
T ss_dssp             CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHH
Confidence            344445556666666666666666666666553 33445555566666666666666666666666421 2455666666


Q ss_pred             HHHHHcC-CHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChH
Q 006615          215 EHLVNLG-KLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQ  293 (638)
Q Consensus       215 ~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~  293 (638)
                      ..+...| ++++|.+.|++..+.. +.+...|..+...+...|++++|...|+++.+.........+.+...+...|+++
T Consensus        98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~  176 (330)
T 3hym_B           98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK  176 (330)
T ss_dssp             HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH
Confidence            6666666 6666666666665432 2245556666666666666777766666665544333333334455555556666


Q ss_pred             HHHHHHHHhCcCccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccch
Q 006615          294 GANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTT  373 (638)
Q Consensus       294 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (638)
                      +|...+++....                                                                    
T Consensus       177 ~A~~~~~~al~~--------------------------------------------------------------------  188 (330)
T 3hym_B          177 LAERFFSQALSI--------------------------------------------------------------------  188 (330)
T ss_dssp             HHHHHHHHHHTT--------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHh--------------------------------------------------------------------
Confidence            555555544211                                                                    


Q ss_pred             HHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC--------CCCCHHHHH
Q 006615          374 RLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDG--------MRLPFSTIR  445 (638)
Q Consensus       374 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g--------~~~~~~~~~  445 (638)
                                                .  +.+...+..+...+...|++++|...+++.....        ...+..++.
T Consensus       189 --------------------------~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~  240 (330)
T 3hym_B          189 --------------------------A--PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLN  240 (330)
T ss_dssp             --------------------------C--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHH
T ss_pred             --------------------------C--CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHH
Confidence                                      0  1234555566666666666666666666655421        012234555


Q ss_pred             HHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCc-chhhHHHHHHH
Q 006615          446 LIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVP-DVQTFSGLMYH  524 (638)
Q Consensus       446 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~  524 (638)
                      .+..+|.+.|++++|...|++..+..     |+....|..+...+.+.|++++|.+.|++..+.  .| +...+..+..+
T Consensus       241 ~la~~~~~~g~~~~A~~~~~~a~~~~-----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~  313 (330)
T 3hym_B          241 NLGHVCRKLKKYAEALDYHRQALVLI-----PQNASTYSAIGYIHSLMGNFENAVDYFHTALGL--RRDDTFSVTMLGHC  313 (330)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHS-----TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT--CSCCHHHHHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHhhC-----ccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc--CCCchHHHHHHHHH
Confidence            55555566666666666665555432     112245566666666666666666666665543  23 34444445444


Q ss_pred             H
Q 006615          525 F  525 (638)
Q Consensus       525 ~  525 (638)
                      +
T Consensus       314 ~  314 (330)
T 3hym_B          314 I  314 (330)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.74  E-value=4e-15  Score=146.76  Aligned_cols=298  Identities=9%  Similarity=-0.058  Sum_probs=189.1

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHH
Q 006615          103 STLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVY  182 (638)
Q Consensus       103 ~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~  182 (638)
                      ..+......+...|++++|..+++++.+.. +.+...+..++..+.+.|++++|..+++++.+.. +.+...|..+...+
T Consensus        23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~  100 (330)
T 3hym_B           23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYY  100 (330)
T ss_dssp             TTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHH
Confidence            345555666666666666666666665432 2333345555566666666666666666666543 33455666666666


Q ss_pred             HhcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHH
Q 006615          183 AKTG-KNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEA  261 (638)
Q Consensus       183 ~~~g-~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A  261 (638)
                      ...| ++++|.+.|++..+... .+...|..+...+...|++++|.+.|++..+.. +.+...+..+...|...|++++|
T Consensus       101 ~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A  178 (330)
T 3hym_B          101 LMVGHKNEHARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLA  178 (330)
T ss_dssp             HHSCSCHHHHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHH
T ss_pred             HHhhhhHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHH
Confidence            6666 66667766666665421 145566666666666777777777666665432 12345555566667777777777


Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCCCcccccccccc
Q 006615          262 KSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLK  341 (638)
Q Consensus       262 ~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (638)
                      .+.+++..+.........+.+...+...|++++|...+++.......                                 
T Consensus       179 ~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---------------------------------  225 (330)
T 3hym_B          179 ERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKA---------------------------------  225 (330)
T ss_dssp             HHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT---------------------------------
T ss_pred             HHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhh---------------------------------
Confidence            77777766544322223335566666777777777766655211000                                 


Q ss_pred             CCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCC
Q 006615          342 PWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGH  421 (638)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~  421 (638)
                                                                            .........+...+..+..++...|+
T Consensus       226 ------------------------------------------------------~~~~~~~~~~~~~~~~la~~~~~~g~  251 (330)
T 3hym_B          226 ------------------------------------------------------IGNEVTVDKWEPLLNNLGHVCRKLKK  251 (330)
T ss_dssp             ------------------------------------------------------TSCSCTTTTCCHHHHHHHHHHHHTTC
T ss_pred             ------------------------------------------------------ccccccccHHHHHHHHHHHHHHHhcC
Confidence                                                                  00011113345678889999999999


Q ss_pred             hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHH-HccCChH
Q 006615          422 VELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTL-TKCKRDF  497 (638)
Q Consensus       422 ~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~~~  497 (638)
                      +++|...+++..+.... +...+..+...|.+.|++++|...|++..+.     .|+....+..+..++ ...|+.+
T Consensus       252 ~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~~g~~~  322 (330)
T 3hym_B          252 YAEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGL-----RRDDTFSVTMLGHCIEMYIGDSE  322 (330)
T ss_dssp             HHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT-----CSCCHHHHHHHHHHHHTTTTC--
T ss_pred             HHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHcc-----CCCchHHHHHHHHHHHHHhCchh
Confidence            99999999999877643 6678889999999999999999999998765     344446778887777 4555543

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.73  E-value=2.8e-13  Score=141.51  Aligned_cols=200  Identities=9%  Similarity=-0.018  Sum_probs=142.8

Q ss_pred             HHHHHHHHHcCCCCCCChhHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHh----cCCHHHH
Q 006615           85 ALSIMEALKSNPNFSHNQSTLHALATVLAK----SQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYST----SGDLELV  156 (638)
Q Consensus        85 Al~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~A  156 (638)
                      ++..++.....+    +...+..+...+..    .++++.|...|++..+.|   +...+..|...|..    .++.++|
T Consensus        26 ~~~~~~~~a~~g----~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A   98 (490)
T 2xm6_A           26 NLEQLKQKAESG----EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQA   98 (490)
T ss_dssp             CHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred             HHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence            345555444432    34466666666666    788888888888887754   45567777788887    7888888


Q ss_pred             HHHHHHHHhcCCCCCHHhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHH
Q 006615          157 LSTWNEYRQRAKLLSTESYNIVMSVYAK----TGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVN----LGKLDSALE  228 (638)
Q Consensus       157 ~~l~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~----~g~~~~A~~  228 (638)
                      ...|++..+.|   +...+..|-..|..    .+++++|.+.|++..+.|   +...+..|...|..    .++.++|.+
T Consensus        99 ~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~  172 (490)
T 2xm6_A           99 VIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMARE  172 (490)
T ss_dssp             HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred             HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence            88888888765   46777777777877    778888888888888765   56677777777776    778888888


Q ss_pred             HHHhcccCCCccCHhHHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----cCChHHHHHHHH
Q 006615          229 VFSALPLMRIKRTSKQYLILVEGFVG----VERFDEAKSLLNEMRDDGKFPGRAMRVALERMQE----MGFIQGANEFLR  300 (638)
Q Consensus       229 ~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~----~g~~~~a~~~~~  300 (638)
                      .|++..+.|   +...+..|...|..    .+++++|.+.|++..+.|.  ....+.+...+..    .++.++|..+++
T Consensus       173 ~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~y~~g~g~~~~~~~A~~~~~  247 (490)
T 2xm6_A          173 WYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGD--ELGQLHLADMYYFGIGVTQDYTQSRVLFS  247 (490)
T ss_dssp             HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred             HHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence            888877654   56777777777777    7888888888888877652  2233344444444    566666766666


Q ss_pred             Hh
Q 006615          301 EM  302 (638)
Q Consensus       301 ~~  302 (638)
                      ..
T Consensus       248 ~a  249 (490)
T 2xm6_A          248 QS  249 (490)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.71  E-value=2.3e-15  Score=151.08  Aligned_cols=99  Identities=10%  Similarity=-0.144  Sum_probs=54.0

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcch------h
Q 006615          405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKF------K  478 (638)
Q Consensus       405 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~  478 (638)
                      +...|..+...+...|++++|...|+++..... .+...+..+..+|.+.|++++|...|+.+.+..+....|      .
T Consensus       250 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  328 (368)
T 1fch_A          250 DYLLWNKLGATLANGNQSEEAVAAYRRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAM  328 (368)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCC
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccch
Confidence            344566666666666677777666666655432 244555556666666666666666666554432111000      0


Q ss_pred             HHHHHHHHHHHHHccCChHHHHHHHH
Q 006615          479 LMLLYSSLLRTLTKCKRDFDAINVLE  504 (638)
Q Consensus       479 ~~~~~~~li~~~~~~g~~~~A~~l~~  504 (638)
                      ...+|..+..+|.+.|+.++|..+++
T Consensus       329 ~~~~~~~l~~~~~~~g~~~~A~~~~~  354 (368)
T 1fch_A          329 SENIWSTLRLALSMLGQSDAYGAADA  354 (368)
T ss_dssp             CHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred             hhHHHHHHHHHHHHhCChHhHHHhHH
Confidence            12456666666666666666665554

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.71  E-value=4e-13  Score=147.29  Aligned_cols=167  Identities=12%  Similarity=-0.009  Sum_probs=86.7

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHH
Q 006615          405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYS  484 (638)
Q Consensus       405 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~  484 (638)
                      +...|..+...|...|++++|..+|...         ..|..+...|.+.|++++|.+.+++...          ..+|.
T Consensus      1194 n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~n----------~~aWk 1254 (1630)
T 1xi4_A         1194 NNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKANS----------TRTWK 1254 (1630)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhCC----------HHHHH
Confidence            3334444555555555555555555542         2455555555555555555555554311          13455


Q ss_pred             HHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHH-
Q 006615          485 SLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY-  563 (638)
Q Consensus       485 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~-  563 (638)
                      .+-.+|...|++..|.......     ..+...+..++..|.+.|.+++|+.+++...... .-....|+-|-..|++. 
T Consensus      1255 ev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~ 1328 (1630)
T 1xi4_A         1255 EVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK 1328 (1630)
T ss_pred             HHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCC
Confidence            5555555555555555544321     1233344455555555555555555555444322 22233343444444443 


Q ss_pred             -----------hhhCCCCC------CHHHHHHHHHHHhccCcHHHHHHHH
Q 006615          564 -----------LSNSNLMP------DAATKELLKKSLWKEGRRKEAAAVE  596 (638)
Q Consensus       564 -----------m~~~g~~p------~~~~~~~li~~~~~~g~~~~A~~~~  596 (638)
                                 -.+-++.|      +...|.-++-.|.+.|+++.|...+
T Consensus      1329 peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm 1378 (1630)
T 1xi4_A         1329 PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 1378 (1630)
T ss_pred             HHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence                       01112222      4667999999999999999998543

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.71  E-value=3.7e-16  Score=153.71  Aligned_cols=288  Identities=14%  Similarity=0.091  Sum_probs=123.7

Q ss_pred             HHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHH
Q 006615           76 LRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLEL  155 (638)
Q Consensus        76 l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~  155 (638)
                      +.+.|++++|.++++.+...       .+|..+..++.+.|++++|.+.|.+      .+|..+|..++..+...|++++
T Consensus        13 l~~~~~ld~A~~fae~~~~~-------~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~Ee   79 (449)
T 1b89_A           13 IEHIGNLDRAYEFAERCNEP-------AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEE   79 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHccCHHHHHHHHHhCCCh-------HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHH
Confidence            34668899999999988432       3899999999999999999999954      2567789999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc
Q 006615          156 VLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPL  235 (638)
Q Consensus       156 A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~  235 (638)
                      |...++..++.  .+++.+.+.++.+|.+.|+++++.++++       .|+..+|+.+...|...|++++|...|..+  
T Consensus        80 Ai~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--  148 (449)
T 1b89_A           80 LVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--  148 (449)
T ss_dssp             -------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT--
T ss_pred             HHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--
Confidence            99977766663  4557889999999999999999988885       377789999999999999999999999977  


Q ss_pred             CCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHcCChHHHHHHHHHhCcCccccccccc
Q 006615          236 MRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREMLPDKRIKNVRYY  314 (638)
Q Consensus       236 ~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  314 (638)
                             ..|..|+.++.+.|++++|.+.++++      .+..+ -.++.+|+..|+++.|......+            
T Consensus       149 -------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L------------  203 (449)
T 1b89_A          149 -------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI------------  203 (449)
T ss_dssp             -------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT------------
T ss_pred             -------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH------------
Confidence                   36999999999999999999999988      24444 48889999999999985433221            


Q ss_pred             cCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChhHHHHHHH
Q 006615          315 EDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFC  394 (638)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  394 (638)
                                                                                                      
T Consensus       204 --------------------------------------------------------------------------------  203 (449)
T 1b89_A          204 --------------------------------------------------------------------------------  203 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcc--cCCHHHHHHHHHhchhccC
Q 006615          395 WVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGI--SKKADAALKAFHDDRTLCG  472 (638)
Q Consensus       395 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~  472 (638)
                              ..++.....++..|.+.|++++|..+++...... +-....|+-+--+|++  .+++.+.++.|..-....+
T Consensus       204 --------~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k  274 (449)
T 1b89_A          204 --------VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPK  274 (449)
T ss_dssp             --------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHH
T ss_pred             --------HhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcH
Confidence                    1122223457788888899999988888877554 3355666666666654  5567777777765322100


Q ss_pred             CCcchhHHHHHHHHHHHHHccCChHHHHH
Q 006615          473 PISKFKLMLLYSSLLRTLTKCKRDFDAIN  501 (638)
Q Consensus       473 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~  501 (638)
                      .+........|.-+.-.|.+.++++.|..
T Consensus       275 ~~~~~~~~~~w~e~~~ly~~~~e~d~A~~  303 (449)
T 1b89_A          275 VLRAAEQAHLWAELVFLYDKYEEYDNAII  303 (449)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence            00000123568888888888888887776

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.70  E-value=9.8e-16  Score=153.83  Aligned_cols=302  Identities=11%  Similarity=-0.012  Sum_probs=190.8

Q ss_pred             cCCHHHHHH-HHHHHHhcC---CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 006615          150 SGDLELVLS-TWNEYRQRA---KLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDS  225 (638)
Q Consensus       150 ~g~~~~A~~-l~~~m~~~~---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~  225 (638)
                      .|++++|.. .|++.....   ...+...+..+...+.+.|++++|...|+++.+.. +.+..++..+...+.+.|++++
T Consensus        38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~  116 (368)
T 1fch_A           38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL  116 (368)
T ss_dssp             --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence            356666665 555433221   01124456666666666666666766666666642 2255566666666666677777


Q ss_pred             HHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHhCcC
Q 006615          226 ALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPD  305 (638)
Q Consensus       226 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  305 (638)
                      |.+.|+++.+.. +.+..+|..+...|...|++++|.+.++++.................       ...      ..  
T Consensus       117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-------~~~------~~--  180 (368)
T 1fch_A          117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEG-------AGG------AG--  180 (368)
T ss_dssp             HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC-------------------------
T ss_pred             HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH-------hhh------hc--
Confidence            776666665532 23556666677777777777777777777665432221111100000       000      00  


Q ss_pred             ccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCC
Q 006615          306 KRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKS  385 (638)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (638)
                                                                                   ....  ...++..+ ..|+
T Consensus       181 -------------------------------------------------------------~~~~--~~~~~~~~-~~~~  196 (368)
T 1fch_A          181 -------------------------------------------------------------LGPS--KRILGSLL-SDSL  196 (368)
T ss_dssp             --------------------------------------------------------------------CTTHHHH-HHHH
T ss_pred             -------------------------------------------------------------ccHH--HHHHHHHh-hccc
Confidence                                                                         0000  00011111 2344


Q ss_pred             hhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHH
Q 006615          386 PETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFH  465 (638)
Q Consensus       386 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~  465 (638)
                      +++|.+.|..+.....-.++..++..+...+.+.|++++|...++++...... +..++..+...|.+.|++++|...|+
T Consensus       197 ~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~  275 (368)
T 1fch_A          197 FLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYR  275 (368)
T ss_dssp             HHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            45555555544433322336788999999999999999999999999876533 67889999999999999999999999


Q ss_pred             hchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcc------------hhhHHHHHHHHHccCCHHH
Q 006615          466 DDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPD------------VQTFSGLMYHFALQGDEKI  533 (638)
Q Consensus       466 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~------------~~t~~~li~~~~~~g~~~~  533 (638)
                      ++.+.     .|+...+|..+...|.+.|++++|.+.|+++.+.  .|+            ..+|..+..+|...|++++
T Consensus       276 ~al~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  348 (368)
T 1fch_A          276 RALEL-----QPGYIRSRYNLGISCINLGAHREAVEHFLEALNM--QRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA  348 (368)
T ss_dssp             HHHHH-----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHTC------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred             HHHHh-----CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCCCccccccchhhHHHHHHHHHHHHhCChHh
Confidence            98775     3444578999999999999999999999998774  222            5789999999999999999


Q ss_pred             HHHHHHH
Q 006615          534 VQKLFSM  540 (638)
Q Consensus       534 a~~l~~~  540 (638)
                      |..++++
T Consensus       349 A~~~~~~  355 (368)
T 1fch_A          349 YGAADAR  355 (368)
T ss_dssp             HHHHHTT
T ss_pred             HHHhHHH
Confidence            9988863

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.69  E-value=4.2e-15  Score=149.11  Aligned_cols=266  Identities=9%  Similarity=-0.010  Sum_probs=175.3

Q ss_pred             hHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006615          137 SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH  216 (638)
Q Consensus       137 ~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~  216 (638)
                      ...+..+...+.+.|++++|...|+++.+.. +.+..+|..+...+.+.|++++|.+.|++..+.. +.+..++..+...
T Consensus        65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~  142 (365)
T 4eqf_A           65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS  142 (365)
T ss_dssp             CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence            3446677777778888888888888777664 4457777777777888888888888887777643 1246677777777


Q ss_pred             HHHcCCHHHHHHHHHhcccCCCccC-H----------hHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 006615          217 LVNLGKLDSALEVFSALPLMRIKRT-S----------KQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALER  285 (638)
Q Consensus       217 ~~~~g~~~~A~~~~~~m~~~g~~p~-~----------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~  285 (638)
                      |...|++++|.+.|+++.+..  |+ .          ..+..+...+...|++++|...|+++......           
T Consensus       143 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-----------  209 (365)
T 4eqf_A          143 YTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGD-----------  209 (365)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCS-----------
T ss_pred             HHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcC-----------
Confidence            777777777777777766432  22 1          12223355555566666666666655442211           


Q ss_pred             HHHcCChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhh
Q 006615          286 MQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLA  365 (638)
Q Consensus       286 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (638)
                                                                                                      
T Consensus       210 --------------------------------------------------------------------------------  209 (365)
T 4eqf_A          210 --------------------------------------------------------------------------------  209 (365)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 006615          366 DAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIR  445 (638)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~  445 (638)
                                                           .++...+..+...+...|++++|.+.|++..+.... +..++.
T Consensus       210 -------------------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~  251 (365)
T 4eqf_A          210 -------------------------------------MIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPE-DYSLWN  251 (365)
T ss_dssp             -------------------------------------SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred             -------------------------------------ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHH
Confidence                                                 124555666667777777777777777777665432 566777


Q ss_pred             HHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCC---C--------cc
Q 006615          446 LIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGI---V--------PD  514 (638)
Q Consensus       446 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~--------p~  514 (638)
                      .+..+|.+.|++++|...|+++.+.     .|+...+|..+...|.+.|++++|.+.|+++.+..-   .        .+
T Consensus       252 ~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  326 (365)
T 4eqf_A          252 RLGATLANGDRSEEAVEAYTRALEI-----QPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAIS  326 (365)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhc-----CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhH
Confidence            7777777777777777777776654     333346788888888888888888888888766310   0        13


Q ss_pred             hhhHHHHHHHHHccCCHHHHHHHHHH
Q 006615          515 VQTFSGLMYHFALQGDEKIVQKLFSM  540 (638)
Q Consensus       515 ~~t~~~li~~~~~~g~~~~a~~l~~~  540 (638)
                      ...|..+..++...|+.+.+.++.+.
T Consensus       327 ~~~~~~l~~~~~~~g~~~~a~~~~~~  352 (365)
T 4eqf_A          327 GNIWAALRIALSLMDQPELFQAANLG  352 (365)
T ss_dssp             CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence            67788899999999999888777654

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.69  E-value=7.8e-17  Score=158.51  Aligned_cols=305  Identities=11%  Similarity=0.088  Sum_probs=129.0

Q ss_pred             hcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHH
Q 006615          114 KSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVE  193 (638)
Q Consensus       114 ~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~  193 (638)
                      +.|++++|.+.++++..      +.+|..|..++.+.|++++|.+.|.+.      +|..+|..++.++...|++++|..
T Consensus        15 ~~~~ld~A~~fae~~~~------~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~   82 (449)
T 1b89_A           15 HIGNLDRAYEFAERCNE------PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK   82 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HccCHHHHHHHHHhCCC------hHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence            44555666666655521      235666666666666666666666432      345566666666666666666666


Q ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 006615          194 TFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGK  273 (638)
Q Consensus       194 ~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~  273 (638)
                      .++..++.  .+++.+.+.++.+|.+.|+++++.++++       .|+..+|+.+.+.|...|++++|..+|..+     
T Consensus        83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----  148 (449)
T 1b89_A           83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----  148 (449)
T ss_dssp             ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred             HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence            55444442  3345556666666666666666655553       245556666666666666666666666654     


Q ss_pred             CCCHHHHHHHHHHHHcCChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHh
Q 006615          274 FPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTL  353 (638)
Q Consensus       274 ~p~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (638)
                         ..+..+..++.+.|++++|.+.+                                                      
T Consensus       149 ---~n~~~LA~~L~~Lg~yq~AVea~------------------------------------------------------  171 (449)
T 1b89_A          149 ---SNFGRLASTLVHLGEYQAAVDGA------------------------------------------------------  171 (449)
T ss_dssp             ---TCHHHHHHHHHTTTCHHHHHHHH------------------------------------------------------
T ss_pred             ---hhHHHHHHHHHHhccHHHHHHHH------------------------------------------------------
Confidence               12234445555555555555544                                                      


Q ss_pred             hcCCHHHHHHhhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 006615          354 DEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLR  433 (638)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~  433 (638)
                                                              ..+       .++.+|..++.+|+..|+++.|......  
T Consensus       172 ----------------------------------------~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~--  202 (449)
T 1b89_A          172 ----------------------------------------RKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLH--  202 (449)
T ss_dssp             ----------------------------------------HHH-------TCHHHHHHHHHHHHHTTCHHHHHHTTTT--
T ss_pred             ----------------------------------------HHc-------CCchhHHHHHHHHHHcCcHHHHHHHHHH--
Confidence                                                    443       1788999999999999999999665443  


Q ss_pred             HcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHcc--CChHHHHHHHHHHHhCCC
Q 006615          434 SDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKC--KRDFDAINVLEEMIFSGI  511 (638)
Q Consensus       434 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~A~~l~~~m~~~g~  511 (638)
                         +..++.-...++..|.+.|++++|..+++.....     .+..+..|+-|-.+|++-  ++..+.+++|..  +-.+
T Consensus       203 ---L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~l-----e~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini  272 (449)
T 1b89_A          203 ---IVVHADELEELINYYQDRGYFEELITMLEAALGL-----ERAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNI  272 (449)
T ss_dssp             ---TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-----TTCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCH
T ss_pred             ---HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCC-----cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcC
Confidence               3334445667999999999999999999997654     233357899888888875  455555555542  2233


Q ss_pred             Cc------chhhHHHHHHHHHccCCHHHHHHHHHHHHhC-CC-------------CCCHhhHHHHHHHHHHH
Q 006615          512 VP------DVQTFSGLMYHFALQGDEKIVQKLFSMVRQN-GV-------------EPDAYMFKVLIQAYCKY  563 (638)
Q Consensus       512 ~p------~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~-~~-------------~p~~~~~~~li~~~~~~  563 (638)
                      +|      +...|.-+.-.|.+.++++.|...   |.++ ..             ..|...|-..|..|...
T Consensus       273 ~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t---m~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~  341 (449)
T 1b89_A          273 PKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF  341 (449)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH---HHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH---HHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhc
Confidence            33      567899999999999999988763   3332 11             23566677777776643

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.68  E-value=2.7e-12  Score=134.05  Aligned_cols=345  Identities=11%  Similarity=0.013  Sum_probs=270.5

Q ss_pred             HHHHHHc----CCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCchHhHHHH
Q 006615           72 VTHALRS----APNADSALSIMEALKSNPNFSHNQSTLHALATVLAK----SQRNHELKTLIGDISSSKFLNVSVNFMNL  143 (638)
Q Consensus        72 ~~~~l~~----~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~l~~~~~~~~~~~~~~~~~~l  143 (638)
                      +...+..    .+++++|+..|+...+.+    +...+..+...+..    .++.++|..+|++..+.|   +...+..|
T Consensus        45 lg~~y~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~L  117 (490)
T 2xm6_A           45 LGYRYFQGNETTKDLTQAMDWFRRAAEQG----YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNL  117 (490)
T ss_dssp             HHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred             HHHHHHcCCCCCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence            4455555    789999999999988763    45578888888888    899999999999998865   55667778


Q ss_pred             HHHHHh----cCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006615          144 MQWYST----SGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAK----TGKNFEAVETFRQVIDEGAIPNSRTYTVMIE  215 (638)
Q Consensus       144 l~~~~~----~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~  215 (638)
                      ...|..    .+++++|...|++..+.|   +..++..|...|..    .++.++|.+.|++..+.|   +...+..|..
T Consensus       118 g~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~  191 (490)
T 2xm6_A          118 GVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGY  191 (490)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred             HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence            888888    789999999999998876   57788888888887    789999999999999874   6788888888


Q ss_pred             HHHH----cCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006615          216 HLVN----LGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVG----VERFDEAKSLLNEMRDDGKFPGRAMRVALERMQ  287 (638)
Q Consensus       216 ~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~  287 (638)
                      .|..    .++.++|.+.|++..+.|   +...+..|...|..    .+++++|...|++..+.|..  ...+.+-..+.
T Consensus       192 ~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~--~a~~~lg~~y~  266 (490)
T 2xm6_A          192 MYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNS--IAQFRLGYILE  266 (490)
T ss_dssp             HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCH--HHHHHHHHHHH
T ss_pred             HHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCH--HHHHHHHHHHH
Confidence            8888    899999999999988754   56778888888876    88999999999999876532  23334444444


Q ss_pred             H----cCChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHH
Q 006615          288 E----MGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSL  363 (638)
Q Consensus       288 ~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (638)
                      .    .++.++|..+++..                                                             
T Consensus       267 ~g~~~~~d~~~A~~~~~~a-------------------------------------------------------------  285 (490)
T 2xm6_A          267 QGLAGAKEPLKALEWYRKS-------------------------------------------------------------  285 (490)
T ss_dssp             HTTTSSCCHHHHHHHHHHH-------------------------------------------------------------
T ss_pred             CCCCCCCCHHHHHHHHHHH-------------------------------------------------------------
Confidence            4    55566666555544                                                             


Q ss_pred             hhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCC
Q 006615          364 LADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARH-----GHVELVDRLIAKLRSDGMR  438 (638)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~-----g~~~~a~~l~~~m~~~g~~  438 (638)
                                                       ... +   +...+..+-..|...     +++++|...|++..+.|  
T Consensus       286 ---------------------------------~~~-~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~--  326 (490)
T 2xm6_A          286 ---------------------------------AEQ-G---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG--  326 (490)
T ss_dssp             ---------------------------------HTT-T---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT--
T ss_pred             ---------------------------------HHc-C---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC--
Confidence                                             221 1   445566666677766     88999999999988876  


Q ss_pred             CCHHHHHHHHHHHcccC---CHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHc----cCChHHHHHHHHHHHhCCC
Q 006615          439 LPFSTIRLIIDFYGISK---KADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTK----CKRDFDAINVLEEMIFSGI  511 (638)
Q Consensus       439 ~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~  511 (638)
                       +...+..+...|...|   +.++|...|++..+..    .   +..+..+...|..    .++.++|.+.|++..+.| 
T Consensus       327 -~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~----~---~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-  397 (490)
T 2xm6_A          327 -DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG----E---KAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG-  397 (490)
T ss_dssp             -CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT----C---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-
T ss_pred             -CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC----C---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC-
Confidence             4566667777776655   7889999998876541    1   3578888888888    889999999999998875 


Q ss_pred             CcchhhHHHHHHHHHc----cCCHHHHHHHHHHHHhCC
Q 006615          512 VPDVQTFSGLMYHFAL----QGDEKIVQKLFSMVRQNG  545 (638)
Q Consensus       512 ~p~~~t~~~li~~~~~----~g~~~~a~~l~~~m~~~~  545 (638)
                        +...+..|-..|..    .++.++|.+.|+...+.+
T Consensus       398 --~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~  433 (490)
T 2xm6_A          398 --LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND  433 (490)
T ss_dssp             --CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred             --CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence              56677778888877    899999999999998865

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.66  E-value=1.9e-15  Score=151.59  Aligned_cols=288  Identities=10%  Similarity=-0.019  Sum_probs=210.3

Q ss_pred             CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHH
Q 006615          171 STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE  250 (638)
Q Consensus       171 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~  250 (638)
                      +...|..+...+.+.|++++|.+.|+++.+.. +.+..+|..+...|.+.|++++|.+.|++..+.. +.+..+|..+..
T Consensus        64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~  141 (365)
T 4eqf_A           64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV  141 (365)
T ss_dssp             TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence            45568888888999999999999999998853 2367888888888999999999999998887643 235778888888


Q ss_pred             HHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCC
Q 006615          251 GFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNS  330 (638)
Q Consensus       251 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (638)
                      .|...|++++|...|+++.+..  |+....                                                  
T Consensus       142 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~--------------------------------------------------  169 (365)
T 4eqf_A          142 SYTNTSHQQDACEALKNWIKQN--PKYKYL--------------------------------------------------  169 (365)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC--HHHHCC--------------------------------------------------
T ss_pred             HHHccccHHHHHHHHHHHHHhC--ccchHH--------------------------------------------------
Confidence            8888889888888888876532  110000                                                  


Q ss_pred             CccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHH
Q 006615          331 GVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALE  410 (638)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~  410 (638)
                                                                                          ..........+.
T Consensus       170 --------------------------------------------------------------------~~~~~~~~~~~~  181 (365)
T 4eqf_A          170 --------------------------------------------------------------------VKNKKGSPGLTR  181 (365)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------HhhhccchHHHH
Confidence                                                                                000001223345


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHH
Q 006615          411 KMLTILARHGHVELVDRLIAKLRSDGMR-LPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRT  489 (638)
Q Consensus       411 ~li~~~~~~g~~~~a~~l~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~  489 (638)
                      .+...+...|++++|..+++++...... ++..++..+...|...|++++|...|+++.+.     .|+...+|..+...
T Consensus       182 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~  256 (365)
T 4eqf_A          182 RMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV-----RPEDYSLWNRLGAT  256 (365)
T ss_dssp             -------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHH
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHH
Confidence            5677888999999999999999887543 26889999999999999999999999998876     34445789999999


Q ss_pred             HHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHHhhhCCC
Q 006615          490 LTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNL  569 (638)
Q Consensus       490 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~m~~~g~  569 (638)
                      |.+.|++++|++.|+++.+.. +.+..+|..+..+|...|++++|.+.|+++.+..  |+...-..          ....
T Consensus       257 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~----------~~~~  323 (365)
T 4eqf_A          257 LANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQ--RKSRNQQQ----------VPHP  323 (365)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--HCC-------------------
T ss_pred             HHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccCCCcc----------cchh
Confidence            999999999999999998852 2247889999999999999999999999988632  22100000          0000


Q ss_pred             CCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 006615          570 MPDAATKELLKKSLWKEGRRKEAAAVEER  598 (638)
Q Consensus       570 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~  598 (638)
                      ..+..+|..|..++...|+.+.|.++.++
T Consensus       324 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  352 (365)
T 4eqf_A          324 AISGNIWAALRIALSLMDQPELFQAANLG  352 (365)
T ss_dssp             ---CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred             hhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence            12467889999999999999999888765

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.66  E-value=2.1e-12  Score=136.30  Aligned_cols=407  Identities=9%  Similarity=-0.030  Sum_probs=249.0

Q ss_pred             HHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHH-HhcCCHH
Q 006615           76 LRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWY-STSGDLE  154 (638)
Q Consensus        76 l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~-~~~g~~~  154 (638)
                      +.+.|++++|..+|+.+.+..  +.+...|...+..+.+.|+++.|..+|++.....  |+...|...+... ...|+.+
T Consensus        22 ~~~~~~~~~a~~~~e~al~~~--P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~~~~~~~~~~~   97 (530)
T 2ooe_A           22 EAQNQPIDKARKTYERLVAQF--PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLSYVRETKGKLP   97 (530)
T ss_dssp             HHHSSCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHHHHHHHTTTST
T ss_pred             HHHhCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHccchh
Confidence            355778888888888887642  3355567778888888888888888888877653  5666666666433 3446665


Q ss_pred             HHHH----HHHHHHhc-CCC-CCHHhHHHHHHHHHh---------cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--
Q 006615          155 LVLS----TWNEYRQR-AKL-LSTESYNIVMSVYAK---------TGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHL--  217 (638)
Q Consensus       155 ~A~~----l~~~m~~~-~~~-p~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~--  217 (638)
                      .|.+    +|++.... |.. ++...|...+....+         .|+++.|..+|++..+....+....|.......  
T Consensus        98 ~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~  177 (530)
T 2ooe_A           98 SYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEG  177 (530)
T ss_dssp             THHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHh
Confidence            5544    66665443 332 345667766665544         577788888888877621111122332222110  


Q ss_pred             -----------HHcCCHHHHHHHHHhc------ccCC---CccC--------HhHHHHHHHHHHcc----CCH----HHH
Q 006615          218 -----------VNLGKLDSALEVFSAL------PLMR---IKRT--------SKQYLILVEGFVGV----ERF----DEA  261 (638)
Q Consensus       218 -----------~~~g~~~~A~~~~~~m------~~~g---~~p~--------~~~~~~li~~~~~~----g~~----~~A  261 (638)
                                 .+.++++.|..++.++      .+..   +.|+        ...|...+......    ++.    .+|
T Consensus       178 ~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a  257 (530)
T 2ooe_A          178 INIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRV  257 (530)
T ss_dssp             HCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHH
T ss_pred             hchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHH
Confidence                       0123455555555431      1111   1222        23444444322221    122    255


Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHH-------cCChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCCCccc
Q 006615          262 KSLLNEMRDDGKFPGRAMRVALERMQE-------MGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRI  334 (638)
Q Consensus       262 ~~l~~~m~~~g~~p~~~~~~ll~~~~~-------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (638)
                      ..+|++...........++.....+.+       .|+++.|..+                                    
T Consensus       258 ~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~------------------------------------  301 (530)
T 2ooe_A          258 MFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLF------------------------------------  301 (530)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHH------------------------------------
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhh------------------------------------
Confidence            556666654322211222233332222       3444300000                                    


Q ss_pred             cccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHH
Q 006615          335 AYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLT  414 (638)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~  414 (638)
                                                                         .++|.++|+..... -.+.+...|..++.
T Consensus       302 ---------------------------------------------------~~~A~~~~~~Al~~-~~p~~~~l~~~~~~  329 (530)
T 2ooe_A          302 ---------------------------------------------------SDEAANIYERAIST-LLKKNMLLYFAYAD  329 (530)
T ss_dssp             ---------------------------------------------------HHHHHHHHHHHTTT-TCSSCHHHHHHHHH
T ss_pred             ---------------------------------------------------hHHHHHHHHHHHHH-hCcccHHHHHHHHH
Confidence                                                               01445555544321 11235778888999


Q ss_pred             HHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHH-HHHc
Q 006615          415 ILARHGHVELVDRLIAKLRSDGMRLPF-STIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLR-TLTK  492 (638)
Q Consensus       415 ~~~~~g~~~~a~~l~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~-~~~~  492 (638)
                      .+.+.|++++|..+|+++.+.... +. ..|...+..+.+.|++++|..+|+...+..+.  .+   ..|..... .+..
T Consensus       330 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~--~~---~~~~~~a~~~~~~  403 (530)
T 2ooe_A          330 YEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART--RH---HVYVTAALMEYYC  403 (530)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC--CT---HHHHHHHHHHHHH
T ss_pred             HHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC--ch---HHHHHHHHHHHHH
Confidence            999999999999999999985422 33 57888888888999999999999998775322  11   22222222 2346


Q ss_pred             cCChHHHHHHHHHHHhCCCCc-chhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHHhhhCCCCC
Q 006615          493 CKRDFDAINVLEEMIFSGIVP-DVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMP  571 (638)
Q Consensus       493 ~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~m~~~g~~p  571 (638)
                      .|+.++|..+|++..+.  .| +...|..++..+.+.|+.++|..+|++....+  |.                    .|
T Consensus       404 ~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~--~~--------------------~~  459 (530)
T 2ooe_A          404 SKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG--SL--------------------PP  459 (530)
T ss_dssp             TCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC--CS--------------------CG
T ss_pred             cCChhHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc--CC--------------------CH
Confidence            89999999999998875  35 57789999999999999999999999998753  11                    12


Q ss_pred             --CHHHHHHHHHHHhccCcHHHHHHHHHHHHHccC
Q 006615          572 --DAATKELLKKSLWKEGRRKEAAAVEERCEKIND  604 (638)
Q Consensus       572 --~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~  604 (638)
                        ....|...+....+.|+.+.+.++.+++.+.-+
T Consensus       460 ~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p  494 (530)
T 2ooe_A          460 EKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR  494 (530)
T ss_dssp             GGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence              245777888888889999999999999988653

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.66  E-value=2.9e-14  Score=137.37  Aligned_cols=148  Identities=11%  Similarity=0.073  Sum_probs=93.1

Q ss_pred             HHhcCChHHHHHHHHHHHhCCCCCch--HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChH
Q 006615          112 LAKSQRNHELKTLIGDISSSKFLNVS--VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNF  189 (638)
Q Consensus       112 ~~~~~~~~~a~~l~~~~~~~~~~~~~--~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~  189 (638)
                      ....|++..|....+.....  .|+.  .....+.++|...|+++.|...++.    .-+|+..++..+...+...++.+
T Consensus         9 ~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~   82 (291)
T 3mkr_A            9 AFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRD   82 (291)
T ss_dssp             HHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred             HHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHH
Confidence            34456666666666554432  2322  2334456677777777777665543    12455666677777777777777


Q ss_pred             HHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHH
Q 006615          190 EAVETFRQVIDEGAIPN-SRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM  268 (638)
Q Consensus       190 ~A~~~~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m  268 (638)
                      +|++.++++...+..|+ ...+..+...+...|++++|.+.+++      ..+...+..+...|.+.|++++|.+.|+++
T Consensus        83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~  156 (291)
T 3mkr_A           83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM  156 (291)
T ss_dssp             HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            77777777776655453 44444555667777777777777766      245666777777777777777777777777


Q ss_pred             HhC
Q 006615          269 RDD  271 (638)
Q Consensus       269 ~~~  271 (638)
                      .+.
T Consensus       157 ~~~  159 (291)
T 3mkr_A          157 QDQ  159 (291)
T ss_dssp             HHH
T ss_pred             Hhh
Confidence            654

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.65  E-value=3e-14  Score=140.24  Aligned_cols=131  Identities=6%  Similarity=-0.003  Sum_probs=99.0

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHH
Q 006615          405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYS  484 (638)
Q Consensus       405 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~  484 (638)
                      +...+..+...+...|++++|.+.++++.+.... +..++..+...|...|++++|...|+++.+.     .|+...+|.
T Consensus       171 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~  244 (327)
T 3cv0_A          171 DAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRALDI-----NPGYVRVMY  244 (327)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHH
T ss_pred             CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCHHHHH
Confidence            4556667777777778888888888777765432 5667777778888888888888888877664     233346788


Q ss_pred             HHHHHHHccCChHHHHHHHHHHHhCCCCc-----------chhhHHHHHHHHHccCCHHHHHHHHHHH
Q 006615          485 SLLRTLTKCKRDFDAINVLEEMIFSGIVP-----------DVQTFSGLMYHFALQGDEKIVQKLFSMV  541 (638)
Q Consensus       485 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p-----------~~~t~~~li~~~~~~g~~~~a~~l~~~m  541 (638)
                      .+...+.+.|++++|.+.|+++.+.....           +..+|..+..++.+.|++++|..++++.
T Consensus       245 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  312 (327)
T 3cv0_A          245 NMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN  312 (327)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            88889999999999999999887743221           4678888999999999999999988643

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.65  E-value=1.6e-13  Score=142.69  Aligned_cols=366  Identities=10%  Similarity=-0.066  Sum_probs=202.3

Q ss_pred             hHhHHHHHHHHHhcCCHHHHHHHHHHHHhc--------CCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHc-----C-
Q 006615          137 SVNFMNLMQWYSTSGDLELVLSTWNEYRQR--------AKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE-----G-  202 (638)
Q Consensus       137 ~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~--------~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-  202 (638)
                      ...||.|...+...|+.++|++.|++..+.        ..+....+|+.+..+|...|++++|...|++..+.     + 
T Consensus        51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~  130 (472)
T 4g1t_A           51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP  130 (472)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence            445666777777777777777777654321        11223556777777777777777777777665441     0 


Q ss_pred             CCC-CHHHHHHHHHHHHHc--CCHHHHHHHHHhcccCCCccC-HhHHHHHHHH---HHccCCHHHHHHHHHHHHhCCCCC
Q 006615          203 AIP-NSRTYTVMIEHLVNL--GKLDSALEVFSALPLMRIKRT-SKQYLILVEG---FVGVERFDEAKSLLNEMRDDGKFP  275 (638)
Q Consensus       203 ~~p-~~~ty~~li~~~~~~--g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~---~~~~g~~~~A~~l~~~m~~~g~~p  275 (638)
                      ..+ ...+|..+..++.+.  +++++|.+.|++..+.  .|+ ...+..+..+   +...++.++|++.+++..+.....
T Consensus       131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~  208 (472)
T 4g1t_A          131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDN  208 (472)
T ss_dssp             SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSC
T ss_pred             cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcc
Confidence            111 244555554445443  3577777777776553  343 3344444333   334566677777777665543221


Q ss_pred             CHHHHHHHHHHH----HcCChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHH
Q 006615          276 GRAMRVALERMQ----EMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALAN  351 (638)
Q Consensus       276 ~~~~~~ll~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (638)
                      ......+...+.    ..|+.++|.+.+++.                                                 
T Consensus       209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~a-------------------------------------------------  239 (472)
T 4g1t_A          209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEA-------------------------------------------------  239 (472)
T ss_dssp             HHHHHHHHHHHHHCC------CHHHHHHHHH-------------------------------------------------
T ss_pred             hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-------------------------------------------------
Confidence            111122222222    223444555554433                                                 


Q ss_pred             HhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 006615          352 TLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAK  431 (638)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~  431 (638)
                                                                   ....  +.+...+..+...|...|++++|.+.+++
T Consensus       240 ---------------------------------------------l~~~--~~~~~~~~~lg~~~~~~~~~~~A~~~~~~  272 (472)
T 4g1t_A          240 ---------------------------------------------LEKA--PGVTDVLRSAAKFYRRKDEPDKAIELLKK  272 (472)
T ss_dssp             ---------------------------------------------HHHC--SSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ---------------------------------------------HHhC--ccHHHHHHHHHHHHHHcCchHHHHHHHHH
Confidence                                                         1111  22455566677777777777777777777


Q ss_pred             HHHcCCCCCHHHHHHHHHHHcc-------------------cCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHc
Q 006615          432 LRSDGMRLPFSTIRLIIDFYGI-------------------SKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTK  492 (638)
Q Consensus       432 m~~~g~~~~~~~~~~li~~~~~-------------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~  492 (638)
                      ..+.... +..++..+..+|..                   .+..+.|...|+...+.     .|+...+|..+...|..
T Consensus       273 al~~~p~-~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~lg~~~~~  346 (472)
T 4g1t_A          273 ALEYIPN-NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA-----NDNLFRVCSILASLHAL  346 (472)
T ss_dssp             HHHHSTT-CHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH-----CTTTCCCHHHHHHHHHH
T ss_pred             HHHhCCC-hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc-----CCchhhhhhhHHHHHHH
Confidence            7665433 44555555444422                   12356777777776654     23333578889999999


Q ss_pred             cCChHHHHHHHHHHHhCCCCcchh--hHHHHHH-HHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHHh-hhCC
Q 006615          493 CKRDFDAINVLEEMIFSGIVPDVQ--TFSGLMY-HFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYL-SNSN  568 (638)
Q Consensus       493 ~g~~~~A~~l~~~m~~~g~~p~~~--t~~~li~-~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~m-~~~g  568 (638)
                      .|++++|++.|++..+....|...  .+..+.. .....|+.++|++.|++..+  +.|+.......+..+-+.. +...
T Consensus       347 ~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~~~~~~~~~~l~~~~~~~l~  424 (472)
T 4g1t_A          347 ADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKSREKEKMKDKLQKIAKMRLS  424 (472)
T ss_dssp             TTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHHHHHHH
Confidence            999999999999998865443321  2222222 34577999999999999887  4566544444443333321 1112


Q ss_pred             CCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHccCCCCc
Q 006615          569 LMP-DAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSL  608 (638)
Q Consensus       569 ~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~  608 (638)
                      ..| +..+|..|...|...|++++|.+.+++..+.+...|.
T Consensus       425 ~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~  465 (472)
T 4g1t_A          425 KNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPS  465 (472)
T ss_dssp             HCC-CTTHHHHHHHHHHHHHHCC------------------
T ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc
Confidence            234 5778999999999999999999999999998765443

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.65  E-value=4.9e-14  Score=135.75  Aligned_cols=250  Identities=12%  Similarity=0.069  Sum_probs=179.2

Q ss_pred             HHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCC
Q 006615          180 SVYAKTGKNFEAVETFRQVIDEGAIPNS--RTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER  257 (638)
Q Consensus       180 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~  257 (638)
                      +-....|++..|+..++....  ..|+.  .....+.++|...|+++.|...++..    -.|+..++..+...+...|+
T Consensus         7 ~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~   80 (291)
T 3mkr_A            7 KNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSR   80 (291)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTT
T ss_pred             HHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCc
Confidence            334566888889888877644  33443  35566778899999999988766552    25677888888899999999


Q ss_pred             HHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHcCChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCCCcccc
Q 006615          258 FDEAKSLLNEMRDDGKFPGRAMR--VALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIA  335 (638)
Q Consensus       258 ~~~A~~l~~~m~~~g~~p~~~~~--~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (638)
                      .++|++.++++...+..|+....  .+...+...|++++|.+.+++                                  
T Consensus        81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~----------------------------------  126 (291)
T 3mkr_A           81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ----------------------------------  126 (291)
T ss_dssp             HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT----------------------------------
T ss_pred             HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC----------------------------------
Confidence            99999999999887777765442  444667778888887777643                                  


Q ss_pred             ccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHH
Q 006615          336 YGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTI  415 (638)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~  415 (638)
                                                                                         ..+...+..+...
T Consensus       127 -------------------------------------------------------------------~~~~~~~~~l~~~  139 (291)
T 3mkr_A          127 -------------------------------------------------------------------GDSLECMAMTVQI  139 (291)
T ss_dssp             -------------------------------------------------------------------CCSHHHHHHHHHH
T ss_pred             -------------------------------------------------------------------CCCHHHHHHHHHH
Confidence                                                                               1255677788888


Q ss_pred             HHhcCChHHHHHHHHHHHHcCCCCCHHHH---HHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHc
Q 006615          416 LARHGHVELVDRLIAKLRSDGMRLPFSTI---RLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTK  492 (638)
Q Consensus       416 ~~~~g~~~~a~~l~~~m~~~g~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~  492 (638)
                      +.+.|++++|.+.++++.+..  |+....   ...+..+...|++++|..+|+++.+..     |+.+..|+.+..++.+
T Consensus       140 ~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-----p~~~~~~~~la~~~~~  212 (291)
T 3mkr_A          140 LLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-----SPTLLLLNGQAACHMA  212 (291)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-----CCCHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-----CCcHHHHHHHHHHHHH
Confidence            999999999999999988765  332211   223344445678888888888877652     2334678888888888


Q ss_pred             cCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHH-HHHHHHHHHhC
Q 006615          493 CKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKI-VQKLFSMVRQN  544 (638)
Q Consensus       493 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~-a~~l~~~m~~~  544 (638)
                      .|++++|.+.|++..+.. +-+..++..++..+...|+.++ +.++++++.+.
T Consensus       213 ~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~  264 (291)
T 3mkr_A          213 QGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA  264 (291)
T ss_dssp             TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence            888888888888877642 2256677777777878887765 56777777763

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.64  E-value=2.5e-12  Score=135.76  Aligned_cols=416  Identities=10%  Similarity=0.074  Sum_probs=268.6

Q ss_pred             CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHH
Q 006615          100 HNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVM  179 (638)
Q Consensus       100 ~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li  179 (638)
                      -+...|..++.. .+.|+++.|..+|+++.+. .+.+...|..++..+.+.|++++|..+|++.....  |++..|..++
T Consensus        11 ~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~   86 (530)
T 2ooe_A           11 YDLDAWSILIRE-AQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYL   86 (530)
T ss_dssp             TCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHH
T ss_pred             CCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHH
Confidence            356678888884 7789999999999999875 35567789999999999999999999999998864  6888888877


Q ss_pred             HHH-HhcCChHHHHH----HHHHHHHc-CCCC-CHHHHHHHHHHHHH---------cCCHHHHHHHHHhcccCCCccCHh
Q 006615          180 SVY-AKTGKNFEAVE----TFRQVIDE-GAIP-NSRTYTVMIEHLVN---------LGKLDSALEVFSALPLMRIKRTSK  243 (638)
Q Consensus       180 ~~~-~~~g~~~~A~~----~~~~m~~~-g~~p-~~~ty~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~p~~~  243 (638)
                      ... ...|+.++|.+    +|++.... |..| +...|...+....+         .|+++.|.++|++..+........
T Consensus        87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~  166 (530)
T 2ooe_A           87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQ  166 (530)
T ss_dssp             HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHH
T ss_pred             HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHH
Confidence            533 45677776665    77776653 5554 45677777766554         688999999999988731111123


Q ss_pred             HHHHHHHHH-------------HccCCHHHHHHHHHHHH------hCC---CCCCHHHHHHHHHHHHcCChHHHHHHHHH
Q 006615          244 QYLILVEGF-------------VGVERFDEAKSLLNEMR------DDG---KFPGRAMRVALERMQEMGFIQGANEFLRE  301 (638)
Q Consensus       244 ~~~~li~~~-------------~~~g~~~~A~~l~~~m~------~~g---~~p~~~~~~ll~~~~~~g~~~~a~~~~~~  301 (638)
                      .|.......             .+.++++.|..++.+..      +..   +.|+..           ........++..
T Consensus       167 ~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~-----------~~~~~~~~~w~~  235 (530)
T 2ooe_A          167 LWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNT-----------PQEAQQVDMWKK  235 (530)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC-------------CCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCC-----------hhHHHHHHHHHH
Confidence            443332211             12344556666555421      111   122210           000000011110


Q ss_pred             hCcCccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHh
Q 006615          302 MLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLR  381 (638)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (638)
                      ...                                                          ......            .
T Consensus       236 ~~~----------------------------------------------------------~e~~~~------------~  245 (530)
T 2ooe_A          236 YIQ----------------------------------------------------------WEKSNP------------L  245 (530)
T ss_dssp             HHH----------------------------------------------------------HHHHCS------------S
T ss_pred             HHH----------------------------------------------------------HHHcCC------------c
Confidence            000                                                          000000            0


Q ss_pred             ccCCh----hHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHh-------cCChH-------HHHHHHHHHHHcCCCCCHHH
Q 006615          382 HFKSP----ETAWHFFCWVAYQPGYTHDVYALEKMLTILAR-------HGHVE-------LVDRLIAKLRSDGMRLPFST  443 (638)
Q Consensus       382 ~~~~~----~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~-------~g~~~-------~a~~l~~~m~~~g~~~~~~~  443 (638)
                      ..++.    ..+...|+......  +.+...|......+.+       .|+++       +|..++++..+.-.+-+...
T Consensus       246 ~~~~~~~~~~~a~~~y~~al~~~--p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l  323 (530)
T 2ooe_A          246 RTEDQTLITKRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLL  323 (530)
T ss_dssp             CCSCSHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHH
T ss_pred             cCCcchhHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHH
Confidence            00111    23344444443322  2356677777777765       79987       89999999886322336788


Q ss_pred             HHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcc-hhhHHHHH
Q 006615          444 IRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPD-VQTFSGLM  522 (638)
Q Consensus       444 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~li  522 (638)
                      +..++..+.+.|++++|..+|+.+.+..+.  .+  ...|...+..+.+.|+.++|.++|++..+.  .|+ ...|....
T Consensus       324 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--~~--~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a  397 (530)
T 2ooe_A          324 YFAYADYEESRMKYEKVHSIYNRLLAIEDI--DP--TLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAA  397 (530)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHSSSS--CH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhCcccc--Cc--hHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHH
Confidence            999999999999999999999998875221  11  247999999999999999999999999985  233 22332222


Q ss_pred             H-HHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 006615          523 Y-HFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEK  601 (638)
Q Consensus       523 ~-~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~  601 (638)
                      . .+...|+.++|..+|+...+..  |+                      +...|..++..+.+.|+.++|..+|++..+
T Consensus       398 ~~~~~~~~~~~~A~~~~e~al~~~--p~----------------------~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~  453 (530)
T 2ooe_A          398 LMEYYCSKDKSVAFKIFELGLKKY--GD----------------------IPEYVLAYIDYLSHLNEDNNTRVLFERVLT  453 (530)
T ss_dssp             HHHHHHTCCHHHHHHHHHHHHHHH--TT----------------------CHHHHHHHHHHHTTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCChhHHHHHHHHHHHHC--CC----------------------CHHHHHHHHHHHHhCCCHhhHHHHHHHHHh
Confidence            2 2346899999999999988642  22                      467788899999999999999999999998


Q ss_pred             ccCCCCcccccceee------eeccccchhcccccccc
Q 006615          602 INDVPSLALRGHIWA------VSSADLTRVHSIYRNSI  633 (638)
Q Consensus       602 ~~~~~~~~~~~~~w~------~~~~~~~~~~~~~~~~~  633 (638)
                      .+...|. .....|.      ...++.+.+..+++++.
T Consensus       454 ~~~~~~~-~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~  490 (530)
T 2ooe_A          454 SGSLPPE-KSGEIWARFLAFESNIGDLASILKVEKRRF  490 (530)
T ss_dssp             SCCSCGG-GCHHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred             ccCCCHH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            7643331 2233552      23456666666665543

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.62  E-value=6.6e-14  Score=137.75  Aligned_cols=24  Identities=8%  Similarity=-0.110  Sum_probs=12.3

Q ss_pred             HHHHHHHHHHHccCChHHHHHHHH
Q 006615          481 LLYSSLLRTLTKCKRDFDAINVLE  504 (638)
Q Consensus       481 ~~~~~li~~~~~~g~~~~A~~l~~  504 (638)
                      ..|..+...+.+.|+.++|.++++
T Consensus       287 ~~~~~l~~~~~~~g~~~~A~~~~~  310 (327)
T 3cv0_A          287 SMWDFFRMLLNVMNRPDLVELTYA  310 (327)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHH
Confidence            445555555555555555555444

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.59  E-value=3.3e-11  Score=132.39  Aligned_cols=405  Identities=10%  Similarity=0.108  Sum_probs=280.1

Q ss_pred             HHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcC
Q 006615           72 VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSG  151 (638)
Q Consensus        72 ~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g  151 (638)
                      ++.+..+. +..+..+..+.....        ....+...+...|.+++|..+|++...     .....+.++.   ..|
T Consensus      1028 Li~tAIka-D~~Rv~eyI~kLd~~--------d~~eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~ 1090 (1630)
T 1xi4_A         1028 LILTAIKA-DRTRVMEYINRLDNY--------DAPDIANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIG 1090 (1630)
T ss_pred             HHHHHHHh-ChhhHHHHHHHhhhc--------cHHHHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHh
Confidence            44444444 445555555544421        134477778889999999999988531     1111233332   778


Q ss_pred             CHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006615          152 DLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFS  231 (638)
Q Consensus       152 ~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~  231 (638)
                      ++++|.++.++..      +..+|..+..++.+.|++++|.+.|.+.      -|...|.-++..|.+.|++++|.+.+.
T Consensus      1091 nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~ 1158 (1630)
T 1xi4_A         1091 NLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQ 1158 (1630)
T ss_pred             hHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            8999999988662      2678889999999999999999999653      377788889999999999999999998


Q ss_pred             hcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHcCChHHHHHHHHHhCcCccccc
Q 006615          232 ALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREMLPDKRIKN  310 (638)
Q Consensus       232 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~  310 (638)
                      ...+..  ++....+.++.+|++.+++++...+..       .++. .+..+...|...|++++|..+|....       
T Consensus      1159 mArk~~--~e~~Idt~LafaYAKl~rleele~fI~-------~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~------- 1222 (1630)
T 1xi4_A         1159 MARKKA--RESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS------- 1222 (1630)
T ss_pred             HHHhhc--ccccccHHHHHHHHhhcCHHHHHHHHh-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhh-------
Confidence            766543  444445568999999998886444431       2233 33477788899999999999998752       


Q ss_pred             cccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChhHHH
Q 006615          311 VRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAW  390 (638)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  390 (638)
                                                                                   +..-++..+.+.|+++.|.
T Consensus      1223 -------------------------------------------------------------ny~rLA~tLvkLge~q~AI 1241 (1630)
T 1xi4_A         1223 -------------------------------------------------------------NFGRLASTLVHLGEYQAAV 1241 (1630)
T ss_pred             -------------------------------------------------------------HHHHHHHHHHHhCCHHHHH
Confidence                                                                         1233667777789999999


Q ss_pred             HHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhc
Q 006615          391 HFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL  470 (638)
Q Consensus       391 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~  470 (638)
                      +.++..       .+..+|..+-.+|...|++..|......     +..+...+..++..|.+.|.+++|+.+++.....
T Consensus      1242 EaarKA-------~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~L 1309 (1630)
T 1xi4_A         1242 DGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGL 1309 (1630)
T ss_pred             HHHHHh-------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence            999875       3778999999999999999999886653     3346777889999999999999999999876643


Q ss_pred             cCCCcchhHHHHHHHHHHHHHcc--CChHHHHHHHHHHHhCCCCc------chhhHHHHHHHHHccCCHHHHHHHH----
Q 006615          471 CGPISKFKLMLLYSSLLRTLTKC--KRDFDAINVLEEMIFSGIVP------DVQTFSGLMYHFALQGDEKIVQKLF----  538 (638)
Q Consensus       471 ~~~~~~~~~~~~~~~li~~~~~~--g~~~~A~~l~~~m~~~g~~p------~~~t~~~li~~~~~~g~~~~a~~l~----  538 (638)
                           .+..+..|+-+...|++.  ++..++.++|..-.  .++|      +...|.-+.--|.+.|+++.|....    
T Consensus      1310 -----eraH~gmftELaiLyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~ 1382 (1630)
T 1xi4_A         1310 -----ERAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHP 1382 (1630)
T ss_pred             -----ChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhcc
Confidence                 355567888888777774  45556666665332  2222      5678999999999999999988422    


Q ss_pred             ---------HHHHhCCCCCCHhhHHHHHHHHHHH----hh--hCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcc
Q 006615          539 ---------SMVRQNGVEPDAYMFKVLIQAYCKY----LS--NSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKIN  603 (638)
Q Consensus       539 ---------~~m~~~~~~p~~~~~~~li~~~~~~----m~--~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~  603 (638)
                               ++...  -..|...|...+..|...    +.  ...+.|. .-+...+..+.+.|.+.-+...++.....+
T Consensus      1383 ~~a~~~~~Fk~~i~--kv~n~elyykai~Fyl~~~P~~lndLl~~l~~r-lD~~R~V~l~~~~~~l~lik~yl~~vq~~n 1459 (1630)
T 1xi4_A         1383 TDAWKEGQFKDIIT--KVANVELYYRAIQFYLEFKPLLLNDLLMVLSPR-LDHTRAVNYFSKVKQLPLVKPYLRSVQNHN 1459 (1630)
T ss_pred             HhhhhhHHHHHHhc--ccccHHHHHHHHHHHHhhChHHHHHHHHHhhhc-CChHHHHHHHHHcCChHHhHHHHHHHHHhc
Confidence                     22221  234677777777777654    00  0111111 112445566666666666666666665544


Q ss_pred             C
Q 006615          604 D  604 (638)
Q Consensus       604 ~  604 (638)
                      .
T Consensus      1460 ~ 1460 (1630)
T 1xi4_A         1460 N 1460 (1630)
T ss_pred             c
Confidence            3

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.51  E-value=2.1e-11  Score=126.73  Aligned_cols=144  Identities=9%  Similarity=-0.084  Sum_probs=86.1

Q ss_pred             CChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH--HHHHHHH-HHcccCCHHHH
Q 006615          384 KSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFS--TIRLIID-FYGISKKADAA  460 (638)
Q Consensus       384 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~--~~~~li~-~~~~~g~~~~A  460 (638)
                      ...+.|...|.......  +.+...+..+...+...|++++|.+.|++.......+...  .+..+.. .+...|+.++|
T Consensus       314 ~~~~~A~~~~~~a~~~~--~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A  391 (472)
T 4g1t_A          314 ELIGHAVAHLKKADEAN--DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKA  391 (472)
T ss_dssp             HHHHHHHHHHHHHHHHC--TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHH
T ss_pred             hhHHHHHHHHHHHhhcC--CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHH
Confidence            34677888888765443  2234567788889999999999999999988766543321  2223322 34577899999


Q ss_pred             HHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHH
Q 006615          461 LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSM  540 (638)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~  540 (638)
                      +..|.+..+..+.     . ..+..         ....+.++++...+.. +.+..+|+.|-..|...|++++|.+.|++
T Consensus       392 i~~y~kal~i~~~-----~-~~~~~---------~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~k  455 (472)
T 4g1t_A          392 IHHFIEGVKINQK-----S-REKEK---------MKDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSER  455 (472)
T ss_dssp             HHHHHHHHHSCCC-----C-HHHHH---------HHHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC--------
T ss_pred             HHHHHHHHhcCcc-----c-HHHHH---------HHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            9999988765332     1 11111         1233445555555432 34678899999999999999999999999


Q ss_pred             HHhCC
Q 006615          541 VRQNG  545 (638)
Q Consensus       541 m~~~~  545 (638)
                      ..+.|
T Consensus       456 ALe~~  460 (472)
T 4g1t_A          456 GLESG  460 (472)
T ss_dssp             -----
T ss_pred             HHhcC
Confidence            88754

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.47  E-value=8e-12  Score=118.04  Aligned_cols=96  Identities=5%  Similarity=-0.137  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHH
Q 006615          407 YALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSL  486 (638)
Q Consensus       407 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l  486 (638)
                      ..+..+...+...|++++|...+++....... +..++..+...|.+.|++++|...|+...+.     .|+....|..+
T Consensus       140 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~l  213 (258)
T 3uq3_A          140 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEK-----DPNFVRAYIRK  213 (258)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CHHHHHHHHHH
Confidence            34555555666666666666666666554322 3445555555555555555555555554443     12223445555


Q ss_pred             HHHHHccCChHHHHHHHHHHHh
Q 006615          487 LRTLTKCKRDFDAINVLEEMIF  508 (638)
Q Consensus       487 i~~~~~~g~~~~A~~l~~~m~~  508 (638)
                      ...+.+.|+.++|.+.|++..+
T Consensus       214 ~~~~~~~g~~~~A~~~~~~a~~  235 (258)
T 3uq3_A          214 ATAQIAVKEYASALETLDAART  235 (258)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHH
Confidence            5555555555555555555544

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.46  E-value=5.5e-12  Score=115.79  Aligned_cols=189  Identities=16%  Similarity=0.096  Sum_probs=85.5

Q ss_pred             HHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhc--
Q 006615           73 THALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTS--  150 (638)
Q Consensus        73 ~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~--  150 (638)
                      ...+...|++++|+..|+.+.+..  +.+...+..+..++.+.|++++|...+++..+.. +.+...+..+...+.+.  
T Consensus        12 g~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~   88 (217)
T 2pl2_A           12 GVQLYALGRYDAALTLFERALKEN--PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAYVALYR   88 (217)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTS--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhhh
Confidence            344445555555555555555332  2233344455555555555555555555554432 22334444555555555  


Q ss_pred             ---------CCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 006615          151 ---------GDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLG  221 (638)
Q Consensus       151 ---------g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g  221 (638)
                               |++++|...|++..+.+ +-+...|..+..++...|++++|...|++..+..  .+...+..+...|...|
T Consensus        89 ~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g  165 (217)
T 2pl2_A           89 QAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMG  165 (217)
T ss_dssp             TCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHT
T ss_pred             hhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcC
Confidence                     55555555555555443 2234445555555555555555555555555544  34455555555555555


Q ss_pred             CHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHH
Q 006615          222 KLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM  268 (638)
Q Consensus       222 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m  268 (638)
                      ++++|.+.|++..+.. +.+...+..+...+.+.|++++|...|++.
T Consensus       166 ~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~  211 (217)
T 2pl2_A          166 RLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE  211 (217)
T ss_dssp             CHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred             CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            5555555555544321 113344445555555555555555555443

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.46  E-value=9.4e-12  Score=117.52  Aligned_cols=65  Identities=14%  Similarity=-0.066  Sum_probs=46.0

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhc
Q 006615          405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL  470 (638)
Q Consensus       405 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~  470 (638)
                      +...|..+..++...|++++|...+++..+.... +...+..+..+|.+.|++++|...|+...+.
T Consensus       172 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  236 (258)
T 3uq3_A          172 DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYASALETLDAARTK  236 (258)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence            4556666777777777777777777777765432 4667777777777788888887777776554

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.43  E-value=2e-11  Score=112.07  Aligned_cols=197  Identities=14%  Similarity=0.014  Sum_probs=158.5

Q ss_pred             CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHH
Q 006615          100 HNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVM  179 (638)
Q Consensus       100 ~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li  179 (638)
                      ++...+..+...+...|++++|...+++..+.. +.+...+..+...+.+.|++++|...|++..+.+ +.+...|..+.
T Consensus         3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg   80 (217)
T 2pl2_A            3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS   80 (217)
T ss_dssp             -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence            455678888899999999999999999998764 4567778899999999999999999999999876 45678899999


Q ss_pred             HHHHhc-----------CChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHH
Q 006615          180 SVYAKT-----------GKNFEAVETFRQVIDEGAIP-NSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLI  247 (638)
Q Consensus       180 ~~~~~~-----------g~~~~A~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~  247 (638)
                      .++.+.           |++++|...|++..+.  .| +...+..+-..+...|++++|.+.|++..+..  .+...+..
T Consensus        81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~  156 (217)
T 2pl2_A           81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA  156 (217)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred             HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence            999999           9999999999999985  34 57888899999999999999999999998866  68889999


Q ss_pred             HHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHh
Q 006615          248 LVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREM  302 (638)
Q Consensus       248 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~  302 (638)
                      +..+|...|++++|...|++..+.........+.+...+...|++++|...+++.
T Consensus       157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~  211 (217)
T 2pl2_A          157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE  211 (217)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            9999999999999999999998765333334457788899999999999999877

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.40  E-value=5e-11  Score=122.54  Aligned_cols=377  Identities=12%  Similarity=0.050  Sum_probs=234.4

Q ss_pred             HHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCCh---HHHHHHHHHHHhCCCCCchHhHHHHHHHHH
Q 006615           72 VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRN---HELKTLIGDISSSKFLNVSVNFMNLMQWYS  148 (638)
Q Consensus        72 ~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~---~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~  148 (638)
                      +...+.+.|++++|++.|+...+.+  .++  .+..+...+...|+.   ++|..+|++..+.    ++..+..|...+.
T Consensus         9 la~~~~~~g~~~~A~~~~~~aa~~g--~~~--A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~   80 (452)
T 3e4b_A            9 LANEALKRGDTVTAQQNYQQLAELG--YSE--AQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA   80 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHT--CCT--GGGTCC--------------------------------CHHHHHHHHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHCC--CHH--HHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence            5566778899999999999887653  222  444555556667777   8899998887754    4445666666555


Q ss_pred             hcC-----CHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChH---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 006615          149 TSG-----DLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNF---EAVETFRQVIDEGAIPNSRTYTVMIEHLVNL  220 (638)
Q Consensus       149 ~~g-----~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~  220 (638)
                      ..|     +.++|...|++..+.|.   ...+..|...|...+..+   ++.+.+......|.   ......|...|...
T Consensus        81 ~~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~  154 (452)
T 3e4b_A           81 AKPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQ  154 (452)
T ss_dssp             TC--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHH
T ss_pred             hCCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcC
Confidence            555     78899999999988773   337777877777765543   45555555555443   44566677777777


Q ss_pred             CC----HHHHHHHHHhcccCCCccCHhHHHHHHHHHHccC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----
Q 006615          221 GK----LDSALEVFSALPLMRIKRTSKQYLILVEGFVGVE---RFDEAKSLLNEMRDDGKFPGRAMRVALERMQEM----  289 (638)
Q Consensus       221 g~----~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~----  289 (638)
                      +.    .+++..++.....    .+...+..|...|.+.|   +.++|++.|++..+.|.......+.+-..|...    
T Consensus       155 ~~~~~~~~~a~~~~~~a~~----~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~  230 (452)
T 3e4b_A          155 GTYDQHLDDVERICKAALN----TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGT  230 (452)
T ss_dssp             TCGGGGHHHHHHHHHHHTT----TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSS
T ss_pred             CCcccCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCC
Confidence            74    4445555554442    33447888888888899   899999999999888755444334444444332    


Q ss_pred             CChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCc
Q 006615          290 GFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKF  369 (638)
Q Consensus       290 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (638)
                      ++.++|..+|                                                                      
T Consensus       231 ~d~~~A~~~~----------------------------------------------------------------------  240 (452)
T 3e4b_A          231 PDEKTAQALL----------------------------------------------------------------------  240 (452)
T ss_dssp             CCHHHHHHHH----------------------------------------------------------------------
T ss_pred             CCHHHHHHHH----------------------------------------------------------------------
Confidence            3444555544                                                                      


Q ss_pred             ccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHH-H--HhcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 006615          370 VWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTI-L--ARHGHVELVDRLIAKLRSDGMRLPFSTIRL  446 (638)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~-~--~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~  446 (638)
                                              +...  .   -+...+..+-.. +  ...+++++|.+.|++..+.|   +...+..
T Consensus       241 ------------------------~~aa--~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~  288 (452)
T 3e4b_A          241 ------------------------EKIA--P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELL  288 (452)
T ss_dssp             ------------------------HHHG--G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred             ------------------------HHHc--C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence                                    4432  1   134445555554 3  45789999999999998887   6667777


Q ss_pred             HHHHHcccC-----CHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHc----cCChHHHHHHHHHHHhCCCCcchhh
Q 006615          447 IIDFYGISK-----KADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTK----CKRDFDAINVLEEMIFSGIVPDVQT  517 (638)
Q Consensus       447 li~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t  517 (638)
                      +-..|. .|     ++++|...|+...        ++.+.++..|...|..    ..+.++|...|++..+.|.   ...
T Consensus       289 Lg~~y~-~G~g~~~d~~~A~~~~~~Aa--------~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A  356 (452)
T 3e4b_A          289 LGKLYY-EGKWVPADAKAAEAHFEKAV--------GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSA  356 (452)
T ss_dssp             HHHHHH-HCSSSCCCHHHHHHHHHTTT--------TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTH
T ss_pred             HHHHHH-cCCCCCCCHHHHHHHHHHHh--------CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHH
Confidence            777776 44     8999999999865        2224567777777766    4489999999999998773   344


Q ss_pred             HHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHH
Q 006615          518 FSGLMYHFAL----QGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAA  593 (638)
Q Consensus       518 ~~~li~~~~~----~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~  593 (638)
                      ...|-..|..    ..+.++|...|+...+.|.                        ++....-..+......++.++|.
T Consensus       357 ~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~------------------------~~a~~~l~~l~~~~~~~~~~~a~  412 (452)
T 3e4b_A          357 DFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT------------------------PEANDLATQLEAPLTPAQRAEGQ  412 (452)
T ss_dssp             HHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC------------------------HHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC------------------------HHHHHHHHHHHHhCCHHHHHHHH
Confidence            5555555553    4689999999999998772                        22222222333334556778888


Q ss_pred             HHHHHHHHccC
Q 006615          594 AVEERCEKIND  604 (638)
Q Consensus       594 ~~~~~~~~~~~  604 (638)
                      ++.++..+...
T Consensus       413 ~~~~~~~~~~~  423 (452)
T 3e4b_A          413 RLVQQELAARG  423 (452)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHhcc
Confidence            88888776543

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.40  E-value=6e-11  Score=111.70  Aligned_cols=194  Identities=12%  Similarity=0.015  Sum_probs=103.6

Q ss_pred             HHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcC
Q 006615           72 VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSG  151 (638)
Q Consensus        72 ~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g  151 (638)
                      +...+...|++++|+..|+.+....  +.+...+..+...+...|++++|...+++..+.. +.+...+..+...|...|
T Consensus        43 ~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g  119 (252)
T 2ho1_A           43 LGLGYLQRGNTEQAKVPLRKALEID--PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYEQK  119 (252)
T ss_dssp             HHHHHHHTTCTGGGHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCChHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHHh
Confidence            3445555566666666666555432  2234455555555566666666666665555432 223444555555566666


Q ss_pred             CHHHHHHHHHHHHhcCCCC-CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 006615          152 DLELVLSTWNEYRQRAKLL-STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF  230 (638)
Q Consensus       152 ~~~~A~~l~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~  230 (638)
                      ++++|...|+++...+..| +...|..+...+.+.|++++|.+.|++..+.. +.+..++..+...|...|++++|.+.+
T Consensus       120 ~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~  198 (252)
T 2ho1_A          120 RYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQYY  198 (252)
T ss_dssp             CHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            6666666666555421222 34445555555566666666666666555532 113455555555566666666666666


Q ss_pred             HhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006615          231 SALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRD  270 (638)
Q Consensus       231 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~  270 (638)
                      ++..+.. ..+...+..+...+.+.|++++|.+.++++.+
T Consensus       199 ~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~  237 (252)
T 2ho1_A          199 DLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR  237 (252)
T ss_dssp             HHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            5554422 22344455555555556666666666655544

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.38  E-value=1.1e-10  Score=109.78  Aligned_cols=201  Identities=10%  Similarity=0.050  Sum_probs=169.5

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH
Q 006615          102 QSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSV  181 (638)
Q Consensus       102 ~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~  181 (638)
                      ...+..+...+...|++++|...++++.+.. +.+...+..+...|.+.|++++|.+.|+++.+.+ +.+...|..+...
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~  114 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF  114 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence            3467778888899999999999999988753 4467788899999999999999999999998875 4468889999999


Q ss_pred             HHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHH
Q 006615          182 YAKTGKNFEAVETFRQVIDEGAIP-NSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDE  260 (638)
Q Consensus       182 ~~~~g~~~~A~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~  260 (638)
                      +...|++++|.+.|+++.+.+..| +...+..+...+.+.|++++|.+.|++..+.. ..+...+..+...+...|++++
T Consensus       115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~  193 (252)
T 2ho1_A          115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP  193 (252)
T ss_dssp             HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence            999999999999999998844455 56778888999999999999999999987643 2357889999999999999999


Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHhCcC
Q 006615          261 AKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPD  305 (638)
Q Consensus       261 A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  305 (638)
                      |...++++.+...........+...+...|+.++|.+.++.+...
T Consensus       194 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~  238 (252)
T 2ho1_A          194 ARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL  238 (252)
T ss_dssp             HHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            999999998755433333446778889999999999999987543

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.38  E-value=1.7e-10  Score=109.90  Aligned_cols=90  Identities=9%  Similarity=-0.020  Sum_probs=50.2

Q ss_pred             cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCC---HHHHHHHHHhchhccCCCcch---hHHHHHHHHHHHHHc
Q 006615          419 HGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKK---ADAALKAFHDDRTLCGPISKF---KLMLLYSSLLRTLTK  492 (638)
Q Consensus       419 ~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~---~~~~~~~~li~~~~~  492 (638)
                      .+++++|.+.|++..+.... +...+..+..++...|+   +++|...+++..+.....+.+   ....+|..+...|.+
T Consensus       155 ~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  233 (272)
T 3u4t_A          155 NKEYVKADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTI  233 (272)
T ss_dssp             TTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH
Confidence            33666666666665554322 34444444455544454   555555555544432211221   123567777777888


Q ss_pred             cCChHHHHHHHHHHHhC
Q 006615          493 CKRDFDAINVLEEMIFS  509 (638)
Q Consensus       493 ~g~~~~A~~l~~~m~~~  509 (638)
                      .|++++|.+.|++..+.
T Consensus       234 ~~~~~~A~~~~~~al~~  250 (272)
T 3u4t_A          234 NRDKVKADAAWKNILAL  250 (272)
T ss_dssp             TTCHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhc
Confidence            88888888888887764

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.38  E-value=2.6e-11  Score=115.79  Aligned_cols=250  Identities=12%  Similarity=0.001  Sum_probs=144.9

Q ss_pred             hcCCHHHHHHHHHHHHhcCC---CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 006615          149 TSGDLELVLSTWNEYRQRAK---LLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDS  225 (638)
Q Consensus       149 ~~g~~~~A~~l~~~m~~~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~  225 (638)
                      ..|++++|...|+++.+...   +.+..+|..+...+...|++++|.+.|++..+... .+..+|..+...|...|++++
T Consensus        17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~   95 (275)
T 1xnf_A           17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDA   95 (275)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHH
T ss_pred             ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHHH
Confidence            44667777777777766521   11345566666677777777777777777666421 246666666666777777777


Q ss_pred             HHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHhCcC
Q 006615          226 ALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPD  305 (638)
Q Consensus       226 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  305 (638)
                      |.+.|++..+.. +.+..+|..+...|.+.|++++|...|+++.+..  |+...                          
T Consensus        96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~--------------------------  146 (275)
T 1xnf_A           96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPF--------------------------  146 (275)
T ss_dssp             HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHH--------------------------
T ss_pred             HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChH--------------------------
Confidence            777776665532 1245566666666666666666666666665432  22111                          


Q ss_pred             ccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCC
Q 006615          306 KRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKS  385 (638)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (638)
                                                                                                      
T Consensus       147 --------------------------------------------------------------------------------  146 (275)
T 1xnf_A          147 --------------------------------------------------------------------------------  146 (275)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHH
Q 006615          386 PETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFH  465 (638)
Q Consensus       386 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~  465 (638)
                                             ....+..+...|++++|...+++...... ++...+ .++..+...++.++|...+.
T Consensus       147 -----------------------~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~a~~~~~  201 (275)
T 1xnf_A          147 -----------------------RSLWLYLAEQKLDEKQAKEVLKQHFEKSD-KEQWGW-NIVEFYLGNISEQTLMERLK  201 (275)
T ss_dssp             -----------------------HHHHHHHHHHHHCHHHHHHHHHHHHHHSC-CCSTHH-HHHHHHTTSSCHHHHHHHHH
T ss_pred             -----------------------HHHHHHHHHHhcCHHHHHHHHHHHHhcCC-cchHHH-HHHHHHHHhcCHHHHHHHHH
Confidence                                   11122222344556666666655544322 122222 24555556666667777776


Q ss_pred             hchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHH
Q 006615          466 DDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLF  538 (638)
Q Consensus       466 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~  538 (638)
                      ........ ..|+....|..+...|.+.|++++|...|++..+.  .|+.  +.....++...|++++|++-+
T Consensus       202 ~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~--~~~~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          202 ADATDNTS-LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN--FVEHRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             HHCCSHHH-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT--CHHHHHHHHHHHHHHHC----
T ss_pred             HHhccccc-ccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh--HHHHHHHHHHHHHHHhhHHHH
Confidence            65433111 11222467888888999999999999999998875  3533  333355667778888877665

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.37  E-value=1.4e-11  Score=117.76  Aligned_cols=222  Identities=10%  Similarity=0.032  Sum_probs=166.6

Q ss_pred             HHcCCChhHHHHHHHHHHcCCCCCC--ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCH
Q 006615           76 LRSAPNADSALSIMEALKSNPNFSH--NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDL  153 (638)
Q Consensus        76 l~~~~~~~~Al~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~  153 (638)
                      +...|++++|+..|+.+.+.....+  +...+..+...+...|++++|...+++..+.. +.+...+..+...|...|++
T Consensus        15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~   93 (275)
T 1xnf_A           15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNF   93 (275)
T ss_dssp             CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCH
T ss_pred             cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCH
Confidence            4456889999999999886522222  35578888888899999999999999988753 34577788899999999999


Q ss_pred             HHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhc
Q 006615          154 ELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL  233 (638)
Q Consensus       154 ~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m  233 (638)
                      ++|...|++..+.+ +.+..+|..+...|.+.|++++|.+.|+++.+.  .|+.......+..+...|++++|...+++.
T Consensus        94 ~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  170 (275)
T 1xnf_A           94 DAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQH  170 (275)
T ss_dssp             HHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            99999999998864 446788999999999999999999999999884  465555555666667789999999999776


Q ss_pred             ccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC--C--HHHHHHHHHHHHcCChHHHHHHHHHhC
Q 006615          234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP--G--RAMRVALERMQEMGFIQGANEFLREML  303 (638)
Q Consensus       234 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~--~~~~~ll~~~~~~g~~~~a~~~~~~~~  303 (638)
                      .... .++...+. ++..+...++.++|...+++........  +  ...+.+...+...|++++|...+++..
T Consensus       171 ~~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  242 (275)
T 1xnf_A          171 FEKS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAV  242 (275)
T ss_dssp             HHHS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HhcC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            6532 23444444 7777888888889999988875543211  1  122356667777788888888777663

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.37  E-value=1.5e-10  Score=106.70  Aligned_cols=196  Identities=11%  Similarity=0.036  Sum_probs=100.9

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHH
Q 006615          104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYA  183 (638)
Q Consensus       104 ~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~  183 (638)
                      .+..+...+...|++++|...+++..+.. +.+...+..+...|...|++++|...|++..+.. +.+..+|..+...+.
T Consensus        10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~   87 (225)
T 2vq2_A           10 IKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLC   87 (225)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence            44455555555555555555555554432 2234445555555555566666666655555443 234455555555555


Q ss_pred             hc-CChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHH
Q 006615          184 KT-GKNFEAVETFRQVIDEGAIPN-SRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEA  261 (638)
Q Consensus       184 ~~-g~~~~A~~~~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A  261 (638)
                      .. |++++|.+.|+++.+.+..|+ ...+..+...+.+.|++++|.+.|+++.+.. +.+...+..+...+.+.|++++|
T Consensus        88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A  166 (225)
T 2vq2_A           88 GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDA  166 (225)
T ss_dssp             TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHH
Confidence            55 666666666655555222222 3445555555555666666666655554422 12344555555556666666666


Q ss_pred             HHHHHHHHhCCCCCCHHH-HHHHHHHHHcCChHHHHHHHHHh
Q 006615          262 KSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREM  302 (638)
Q Consensus       262 ~~l~~~m~~~g~~p~~~~-~~ll~~~~~~g~~~~a~~~~~~~  302 (638)
                      ...++++.......+... ..+...+...|+.+.+..+++.+
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  208 (225)
T 2vq2_A          167 DYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL  208 (225)
T ss_dssp             HHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            666655544332112222 23334445555666655555554

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.37  E-value=6.6e-11  Score=112.79  Aligned_cols=165  Identities=13%  Similarity=0.166  Sum_probs=104.7

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--HHhHHHHHHH
Q 006615          104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLS--TESYNIVMSV  181 (638)
Q Consensus       104 ~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~--~~~~~~li~~  181 (638)
                      .+......+...|++++|...+++..+.. +.+...+..+...|.+.|++++|...|++..+.+-.|+  ..+|..+...
T Consensus         5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~   83 (272)
T 3u4t_A            5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI   83 (272)
T ss_dssp             CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence            34455666677777777777777776643 23344566677777777777777777777766321111  2236677777


Q ss_pred             HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHH
Q 006615          182 YAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEA  261 (638)
Q Consensus       182 ~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A  261 (638)
                      +...|++++|.+.|++..+... -+..++..+...|...|++++|.+.|++..+.. +.+...|..+...+...+++++|
T Consensus        84 ~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A  161 (272)
T 3u4t_A           84 LMKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKA  161 (272)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence            7777777777777777776422 245667777777777777777777777766542 22455555555233334477777


Q ss_pred             HHHHHHHHhC
Q 006615          262 KSLLNEMRDD  271 (638)
Q Consensus       262 ~~l~~~m~~~  271 (638)
                      .+.|++..+.
T Consensus       162 ~~~~~~a~~~  171 (272)
T 3u4t_A          162 DSSFVKVLEL  171 (272)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            7777776654

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.36  E-value=3.3e-10  Score=104.31  Aligned_cols=165  Identities=13%  Similarity=0.024  Sum_probs=107.1

Q ss_pred             chHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006615          136 VSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIE  215 (638)
Q Consensus       136 ~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~  215 (638)
                      +...+..+...+...|++++|...|++..+.. +.+...|..+...+...|++++|.+.|++..+.. +.+..++..+..
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~   84 (225)
T 2vq2_A            7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW   84 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence            44556677777778888888888888777654 3456677777777778888888888887777642 225666777777


Q ss_pred             HHHHc-CCHHHHHHHHHhcccCCCccC-HhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChH
Q 006615          216 HLVNL-GKLDSALEVFSALPLMRIKRT-SKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQ  293 (638)
Q Consensus       216 ~~~~~-g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~  293 (638)
                      .+... |++++|.+.++++.+.+..|+ ...|..+...+...|++++|...++++.+.........+.+...+...|+++
T Consensus        85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~  164 (225)
T 2vq2_A           85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG  164 (225)
T ss_dssp             HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence            77777 777777777777665222232 4566667777777777777777777765543221122234445555555555


Q ss_pred             HHHHHHHHh
Q 006615          294 GANEFLREM  302 (638)
Q Consensus       294 ~a~~~~~~~  302 (638)
                      +|...++..
T Consensus       165 ~A~~~~~~~  173 (225)
T 2vq2_A          165 DADYYFKKY  173 (225)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            555555544

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.35  E-value=1.2e-09  Score=104.10  Aligned_cols=157  Identities=12%  Similarity=0.098  Sum_probs=92.4

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCHHhHHHH
Q 006615          103 STLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYST----SGDLELVLSTWNEYRQRAKLLSTESYNIV  178 (638)
Q Consensus       103 ~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~A~~l~~~m~~~~~~p~~~~~~~l  178 (638)
                      ..+..+...+...+++++|...|++..+.   .+...+..+...|..    .+++++|...|++..+.+   +..++..+
T Consensus         7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l   80 (273)
T 1ouv_A            7 KELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL   80 (273)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence            34555555555666666666666665552   233445555566666    666666666666666554   45566666


Q ss_pred             HHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHhcccCCCccCHhHHHHHHH
Q 006615          179 MSVYAK----TGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVN----LGKLDSALEVFSALPLMRIKRTSKQYLILVE  250 (638)
Q Consensus       179 i~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~  250 (638)
                      ...|..    .+++++|.+.|++..+.+   +..++..+-..|..    .+++++|.+.|++..+.+   +...+..+..
T Consensus        81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~  154 (273)
T 1ouv_A           81 GNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGS  154 (273)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred             HHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHH
Confidence            666666    666666666666666543   45556666666666    666666666666655543   3445555555


Q ss_pred             HHHc----cCCHHHHHHHHHHHHhC
Q 006615          251 GFVG----VERFDEAKSLLNEMRDD  271 (638)
Q Consensus       251 ~~~~----~g~~~~A~~l~~~m~~~  271 (638)
                      .|..    .+++++|...|++..+.
T Consensus       155 ~~~~~~~~~~~~~~A~~~~~~a~~~  179 (273)
T 1ouv_A          155 LYDAGRGTPKDLKKALASYDKACDL  179 (273)
T ss_dssp             HHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHcCCCCCCCHHHHHHHHHHHHHC
Confidence            5555    56666666666666554

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.35  E-value=6.3e-11  Score=110.71  Aligned_cols=199  Identities=10%  Similarity=0.048  Sum_probs=155.9

Q ss_pred             CHHHHHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHH
Q 006615           68 DPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWY  147 (638)
Q Consensus        68 ~~~~~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~  147 (638)
                      .+..+...+...|++++|+..|+.+.+..  +.+...+..+...+...|++++|...+++..+.. +.+...+..+...|
T Consensus        25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~  101 (243)
T 2q7f_A           25 TGGQQMGRGSEFGDYEKAAEAFTKAIEEN--KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVY  101 (243)
T ss_dssp             -----------------CCTTHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHH
Confidence            34445667788899999999999998653  3456788888999999999999999999988753 34667788899999


Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 006615          148 STSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSAL  227 (638)
Q Consensus       148 ~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~  227 (638)
                      ...|++++|...|+++.+.+ +.+...|..+...+.+.|++++|.+.+++..+.. +.+...+..+...+.+.|++++|.
T Consensus       102 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~  179 (243)
T 2q7f_A          102 VVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEAL  179 (243)
T ss_dssp             HHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred             HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHH
Confidence            99999999999999998875 4568889999999999999999999999998853 236788889999999999999999


Q ss_pred             HHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 006615          228 EVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG  272 (638)
Q Consensus       228 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g  272 (638)
                      +.|++..+.. ..+..+|..+...|.+.|++++|.+.++++.+..
T Consensus       180 ~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  223 (243)
T 2q7f_A          180 SQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ  223 (243)
T ss_dssp             HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence            9999887643 2357789999999999999999999999997754

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.35  E-value=1.2e-09  Score=104.12  Aligned_cols=215  Identities=13%  Similarity=0.039  Sum_probs=185.4

Q ss_pred             HHHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCchHhHHHHHHH
Q 006615           71 IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAK----SQRNHELKTLIGDISSSKFLNVSVNFMNLMQW  146 (638)
Q Consensus        71 ~~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~  146 (638)
                      .+...+...|++++|+..|+...+.    -+...+..+...+..    .+++++|...|++..+.+   +...+..+...
T Consensus        11 ~lg~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~   83 (273)
T 1ouv_A           11 GLGAKSYKEKDFTQAKKYFEKACDL----KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNL   83 (273)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHH
Confidence            3566788899999999999999873    234578888888888    999999999999998875   66778889999


Q ss_pred             HHh----cCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006615          147 YST----SGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAK----TGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLV  218 (638)
Q Consensus       147 ~~~----~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~  218 (638)
                      |..    .+++++|...|++..+.+   +..++..+...|..    .+++++|.+.|++..+.+   +...+..+...|.
T Consensus        84 ~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~  157 (273)
T 1ouv_A           84 YYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYD  157 (273)
T ss_dssp             HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred             HhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHH
Confidence            999    999999999999999876   68899999999999    999999999999999875   6677888888888


Q ss_pred             H----cCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--
Q 006615          219 N----LGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVG----VERFDEAKSLLNEMRDDGKFPGRAMRVALERMQE--  288 (638)
Q Consensus       219 ~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~--  288 (638)
                      .    .+++++|.+.|++..+.+   +...+..+...|..    .+++++|...|++..+.+.  ....+.+-..+..  
T Consensus       158 ~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~  232 (273)
T 1ouv_A          158 AGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGE  232 (273)
T ss_dssp             HTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTS
T ss_pred             cCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCC
Confidence            8    999999999999988754   56778888899999    9999999999999988753  3445577777888  


Q ss_pred             --cCChHHHHHHHHHhC
Q 006615          289 --MGFIQGANEFLREML  303 (638)
Q Consensus       289 --~g~~~~a~~~~~~~~  303 (638)
                        .+++++|...++...
T Consensus       233 ~~~~~~~~A~~~~~~a~  249 (273)
T 1ouv_A          233 GVTRNEKQAIENFKKGC  249 (273)
T ss_dssp             SSSCCSTTHHHHHHHHH
T ss_pred             CcccCHHHHHHHHHHHH
Confidence              899999999999874

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.34  E-value=1.9e-10  Score=114.48  Aligned_cols=248  Identities=11%  Similarity=0.049  Sum_probs=148.8

Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006615          138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGK-NFEAVETFRQVIDEGAIPNSRTYTVMIEH  216 (638)
Q Consensus       138 ~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~ty~~li~~  216 (638)
                      ..|..+...+.+.|++++|+..|++....+ +-+..+|+.+..++.+.|+ +++|+..|++..+.... +...|+.+...
T Consensus        98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~  175 (382)
T 2h6f_A           98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVL  175 (382)
T ss_dssp             HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence            345555566666666677777766666654 3345666666666666665 77777777666664322 55666666666


Q ss_pred             HHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-cCChHHH
Q 006615          217 LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQE-MGFIQGA  295 (638)
Q Consensus       217 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~-~g~~~~a  295 (638)
                      +.+.|++++|...|+++.+.. .-+...|..+..++.+.|++++|+..|+++.+........++.+...+.. .|..++|
T Consensus       176 ~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA  254 (382)
T 2h6f_A          176 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRA  254 (382)
T ss_dssp             HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred             HHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHH
Confidence            666677777777666666532 22556666666666677777777777777666544433344455555555 3443444


Q ss_pred             H-----HHHHHhCcCccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcc
Q 006615          296 N-----EFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFV  370 (638)
Q Consensus       296 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (638)
                      .     ..++....                                                                  
T Consensus       255 ~~~~el~~~~~Al~------------------------------------------------------------------  268 (382)
T 2h6f_A          255 VLEREVQYTLEMIK------------------------------------------------------------------  268 (382)
T ss_dssp             HHHHHHHHHHHHHH------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHH------------------------------------------------------------------
Confidence            2     33333210                                                                  


Q ss_pred             cchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006615          371 WTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHG--HVELVDRLIAKLRSDGMRLPFSTIRLII  448 (638)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g--~~~~a~~l~~~m~~~g~~~~~~~~~~li  448 (638)
                                                  ..  +-+...|+.+...+...|  ++++|.+.+.++ +. ...+...+..+.
T Consensus       269 ----------------------------l~--P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La  316 (382)
T 2h6f_A          269 ----------------------------LV--PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLV  316 (382)
T ss_dssp             ----------------------------HS--TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHH
T ss_pred             ----------------------------HC--CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHH
Confidence                                        00  124556777777777777  578888888877 32 233567777777


Q ss_pred             HHHcccC---------CHHHHHHHHHhc-hhccCCCcchhHHHHHHHHHHHHH
Q 006615          449 DFYGISK---------KADAALKAFHDD-RTLCGPISKFKLMLLYSSLLRTLT  491 (638)
Q Consensus       449 ~~~~~~g---------~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~li~~~~  491 (638)
                      ..|.+.|         ..++|..+|+++ .+.     +|.....|..+...+.
T Consensus       317 ~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~-----DP~r~~~w~~~~~~l~  364 (382)
T 2h6f_A          317 DIYEDMLENQCDNKEDILNKALELCEILAKEK-----DTIRKEYWRYIGRSLQ  364 (382)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTT-----CGGGHHHHHHHHHHHH
T ss_pred             HHHHHHhcccccchHHHHHHHHHHHHHHHHHh-----CchhHHHHHHHHHHHH
Confidence            8777753         257888888887 443     4444456666655443

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.34  E-value=2.1e-10  Score=114.25  Aligned_cols=128  Identities=11%  Similarity=0.100  Sum_probs=91.7

Q ss_pred             HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCC-HHHHHHHHHhcccCCCccCHhHHHHHH
Q 006615          172 TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIP-NSRTYTVMIEHLVNLGK-LDSALEVFSALPLMRIKRTSKQYLILV  249 (638)
Q Consensus       172 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~li  249 (638)
                      ...|+.+...+.+.|++++|++.|++..+.  .| +...|+.+...+.+.|+ +++|.+.|++..+.. .-+...|+.+.
T Consensus        97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g  173 (382)
T 2h6f_A           97 RDVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR  173 (382)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence            456777888888899999999999999885  34 57788888888889996 999999998887643 23677888888


Q ss_pred             HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHh
Q 006615          250 EGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREM  302 (638)
Q Consensus       250 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~  302 (638)
                      .++...|++++|+..|+++..........++.+...+...|++++|...+++.
T Consensus       174 ~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~a  226 (382)
T 2h6f_A          174 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQL  226 (382)
T ss_dssp             HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHH
T ss_pred             HHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            88888899999999888887644332222334444444444444444444433

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.32  E-value=8.7e-11  Score=109.77  Aligned_cols=200  Identities=14%  Similarity=0.093  Sum_probs=153.6

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH
Q 006615          101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMS  180 (638)
Q Consensus       101 ~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~  180 (638)
                      ....|..+...+...|++++|...+++..+.. +.+...+..+...|.+.|++++|...|++..+.. +.+..+|..+..
T Consensus        22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~   99 (243)
T 2q7f_A           22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN   99 (243)
T ss_dssp             --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence            44467778888889999999999999998753 4567788889999999999999999999998875 456888999999


Q ss_pred             HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHH
Q 006615          181 VYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDE  260 (638)
Q Consensus       181 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~  260 (638)
                      .+...|++++|.+.|++..+.. +.+...+..+...+.+.|++++|.+.++++.+.. ..+...+..+...+.+.|++++
T Consensus       100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~  177 (243)
T 2q7f_A          100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE  177 (243)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred             HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence            9999999999999999998864 2367889999999999999999999999987643 3467889999999999999999


Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHhCc
Q 006615          261 AKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLP  304 (638)
Q Consensus       261 A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  304 (638)
                      |...|+++.+.........+.+...+...|++++|...+++...
T Consensus       178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  221 (243)
T 2q7f_A          178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAID  221 (243)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence            99999999876533223345778899999999999999998753

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.28  E-value=1.3e-10  Score=117.79  Aligned_cols=198  Identities=14%  Similarity=0.054  Sum_probs=110.1

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCc----hHhHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCC-CCHHh
Q 006615          104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNV----SVNFMNLMQWYSTSGDLELVLSTWNEYRQR----AKL-LSTES  174 (638)
Q Consensus       104 ~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~----~~~-p~~~~  174 (638)
                      .+......+...|++++|...+++..+... .+    ...+..+...|...|++++|...|++....    +-. ....+
T Consensus        11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~   89 (406)
T 3sf4_A           11 ELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA   89 (406)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence            444555556666677777776666655421 12    234556666677777777777776665332    111 12345


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHHcCC--------------------HHHHHHH
Q 006615          175 YNIVMSVYAKTGKNFEAVETFRQVIDEGA-IPN----SRTYTVMIEHLVNLGK--------------------LDSALEV  229 (638)
Q Consensus       175 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~ty~~li~~~~~~g~--------------------~~~A~~~  229 (638)
                      |..+...+...|++++|...+++..+... .++    ..++..+...|...|+                    +++|.+.
T Consensus        90 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~  169 (406)
T 3sf4_A           90 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDF  169 (406)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHH
Confidence            66666667777777777777766654210 011    3356666666677777                    6777666


Q ss_pred             HHhccc----CCCcc-CHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCCH-----HHHHHHHHHHHcCChHHHHHH
Q 006615          230 FSALPL----MRIKR-TSKQYLILVEGFVGVERFDEAKSLLNEMRDDGK-FPGR-----AMRVALERMQEMGFIQGANEF  298 (638)
Q Consensus       230 ~~~m~~----~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~-----~~~~ll~~~~~~g~~~~a~~~  298 (638)
                      +++..+    .+-.| ...+|..+...|...|++++|...+++...... .++.     ....+...+...|++++|...
T Consensus       170 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  249 (406)
T 3sf4_A          170 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY  249 (406)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence            665432    11111 234566677777777777777777776643211 1111     112444555666666666666


Q ss_pred             HHHh
Q 006615          299 LREM  302 (638)
Q Consensus       299 ~~~~  302 (638)
                      +++.
T Consensus       250 ~~~a  253 (406)
T 3sf4_A          250 YKKT  253 (406)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6544

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.27  E-value=2.8e-10  Score=115.74  Aligned_cols=161  Identities=13%  Similarity=0.050  Sum_probs=87.5

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH----HhHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-CHHHHH
Q 006615          141 MNLMQWYSTSGDLELVLSTWNEYRQRAKLLST----ESYNIVMSVYAKTGKNFEAVETFRQVIDE----GAIP-NSRTYT  211 (638)
Q Consensus       141 ~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~ty~  211 (638)
                      ..+...+...|++++|...|++..+.+ +.+.    .+|..+...|...|++++|.+.|++..+.    +-.| ...++.
T Consensus        52 ~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  130 (411)
T 4a1s_A           52 ALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG  130 (411)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence            344555666666666666666666553 1122    35666666666667777766666665442    1111 234555


Q ss_pred             HHHHHHHHcCCHHHHHHHHHhcccC----CC-ccCHhHHHHHHHHHHccCC-----------------HHHHHHHHHHHH
Q 006615          212 VMIEHLVNLGKLDSALEVFSALPLM----RI-KRTSKQYLILVEGFVGVER-----------------FDEAKSLLNEMR  269 (638)
Q Consensus       212 ~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~~~~~li~~~~~~g~-----------------~~~A~~l~~~m~  269 (638)
                      .+...|...|++++|.+.|++..+.    +- .....++..+...|...|+                 +++|.+.+++..
T Consensus       131 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al  210 (411)
T 4a1s_A          131 NLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENL  210 (411)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence            6666666677777776666655432    10 1123466677777777777                 777777666553


Q ss_pred             hC----CCCCCH--HHHHHHHHHHHcCChHHHHHHHHHh
Q 006615          270 DD----GKFPGR--AMRVALERMQEMGFIQGANEFLREM  302 (638)
Q Consensus       270 ~~----g~~p~~--~~~~ll~~~~~~g~~~~a~~~~~~~  302 (638)
                      ..    +-.+..  ....+...+...|++++|...+++.
T Consensus       211 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  249 (411)
T 4a1s_A          211 KLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQER  249 (411)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            21    111111  1123444555556666665555543

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.27  E-value=8e-10  Score=111.24  Aligned_cols=238  Identities=8%  Similarity=-0.069  Sum_probs=165.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHhcccC----CCcc-CHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCC-----CCCH--HHH
Q 006615          213 MIEHLVNLGKLDSALEVFSALPLM----RIKR-TSKQYLILVEGFVGVERFDEAKSLLNEMRDDGK-----FPGR--AMR  280 (638)
Q Consensus       213 li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-----~p~~--~~~  280 (638)
                      ....+...|++++|.+.|++..+.    +-.+ ...+|..+...|...|++++|...+++..+.-.     .+..  ...
T Consensus       109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  188 (383)
T 3ulq_A          109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS  188 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence            444567788888888888877652    1111 345778888888889999999988887754211     1111  122


Q ss_pred             HHHHHHHHcCChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHH
Q 006615          281 VALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEV  360 (638)
Q Consensus       281 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (638)
                      .+...|...|++++|...+++....                                                       
T Consensus       189 ~lg~~~~~~g~~~~A~~~~~~al~~-------------------------------------------------------  213 (383)
T 3ulq_A          189 LFATNFLDLKQYEDAISHFQKAYSM-------------------------------------------------------  213 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH-------------------------------------------------------
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHH-------------------------------------------------------
Confidence            5557778888888888887765210                                                       


Q ss_pred             HHHhhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----C
Q 006615          361 VSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSD----G  436 (638)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g  436 (638)
                                                      ...   .........++..+..+|...|++++|.+.+++..+.    +
T Consensus       214 --------------------------------~~~---~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~  258 (383)
T 3ulq_A          214 --------------------------------AEA---EKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESN  258 (383)
T ss_dssp             --------------------------------HHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             --------------------------------HHH---cCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Confidence                                            000   0000112346777888999999999999999987762    3


Q ss_pred             C-CCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCC---hHHHHHHHHHHHhCCCC
Q 006615          437 M-RLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKR---DFDAINVLEEMIFSGIV  512 (638)
Q Consensus       437 ~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~  512 (638)
                      . .....++..+...|.+.|++++|...+++..+.......|.....+..+...+...|+   .++|+.++++.   +..
T Consensus       259 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~  335 (383)
T 3ulq_A          259 ILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLY  335 (383)
T ss_dssp             CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCH
T ss_pred             cchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCH
Confidence            3 3345778888899999999999999999877654333344444556778888889998   77777777765   334


Q ss_pred             cc-hhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006615          513 PD-VQTFSGLMYHFALQGDEKIVQKLFSMVRQ  543 (638)
Q Consensus       513 p~-~~t~~~li~~~~~~g~~~~a~~l~~~m~~  543 (638)
                      |+ ...+..+...|...|++++|.+.+++..+
T Consensus       336 ~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~  367 (383)
T 3ulq_A          336 ADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ  367 (383)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            44 44677788899999999999999998774

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.27  E-value=1.6e-10  Score=117.28  Aligned_cols=138  Identities=9%  Similarity=-0.108  Sum_probs=104.4

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHcccCCHHHHHHHHHhchhccCCC-cchhH
Q 006615          406 VYALEKMLTILARHGHVELVDRLIAKLRSDGM-RLP----FSTIRLIIDFYGISKKADAALKAFHDDRTLCGPI-SKFKL  479 (638)
Q Consensus       406 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~  479 (638)
                      ...+..+...+...|++++|...+++...... .++    ..++..+...|...|++++|...+++..+..... ..+..
T Consensus       187 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  266 (406)
T 3sf4_A          187 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE  266 (406)
T ss_dssp             HHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHH
Confidence            34677788889999999999999988764311 112    2477788889999999999999999876542221 12222


Q ss_pred             HHHHHHHHHHHHccCChHHHHHHHHHHHhC----CCCc-chhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006615          480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFS----GIVP-DVQTFSGLMYHFALQGDEKIVQKLFSMVRQ  543 (638)
Q Consensus       480 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~li~~~~~~g~~~~a~~l~~~m~~  543 (638)
                      ..++..+...|.+.|++++|.+.+++..+.    +-.+ ...++..+...|...|++++|.+.+++..+
T Consensus       267 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  335 (406)
T 3sf4_A          267 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE  335 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            468889999999999999999999988663    1111 155788888999999999999999998775

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.26  E-value=1.4e-10  Score=117.93  Aligned_cols=282  Identities=14%  Similarity=-0.006  Sum_probs=201.3

Q ss_pred             HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHhcccC----CC-ccCH
Q 006615          172 TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNS----RTYTVMIEHLVNLGKLDSALEVFSALPLM----RI-KRTS  242 (638)
Q Consensus       172 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~ty~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~  242 (638)
                      ...+..+...+...|++++|.+.|++..+.+.. +.    ..|..+...|...|++++|.+.|++..+.    +- ....
T Consensus        48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  126 (411)
T 4a1s_A           48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA  126 (411)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence            344556667889999999999999999986322 32    47888889999999999999999887542    11 2245


Q ss_pred             hHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCCCH--HHHHHHHHHHHcCC-----------------hHHHHHHH
Q 006615          243 KQYLILVEGFVGVERFDEAKSLLNEMRDD----GKFPGR--AMRVALERMQEMGF-----------------IQGANEFL  299 (638)
Q Consensus       243 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~--~~~~ll~~~~~~g~-----------------~~~a~~~~  299 (638)
                      .++..+...|...|++++|...+++....    +-.|..  ....+...+...|+                 +++|.+.+
T Consensus       127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~  206 (411)
T 4a1s_A          127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY  206 (411)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence            67888999999999999999999987543    212222  12355677778888                 66666666


Q ss_pred             HHhCcCccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHH
Q 006615          300 REMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKV  379 (638)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (638)
                      ++..                                                                            
T Consensus       207 ~~al----------------------------------------------------------------------------  210 (411)
T 4a1s_A          207 QENL----------------------------------------------------------------------------  210 (411)
T ss_dssp             HHHH----------------------------------------------------------------------------
T ss_pred             HHHH----------------------------------------------------------------------------
Confidence            5431                                                                            


Q ss_pred             HhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHccc
Q 006615          380 LRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMR-LP----FSTIRLIIDFYGIS  454 (638)
Q Consensus       380 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~-~~----~~~~~~li~~~~~~  454 (638)
                                 ++....   .........+..+...+...|++++|...+++..+.... .+    ..++..+...|...
T Consensus       211 -----------~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~  276 (411)
T 4a1s_A          211 -----------KLMRDL---GDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFL  276 (411)
T ss_dssp             -----------HHHHHH---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTT
T ss_pred             -----------HHHHHc---CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHC
Confidence                       111111   000112346777888899999999999999887643211 12    23677888899999


Q ss_pred             CCHHHHHHHHHhchhccCCC-cchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhC----CCCc-chhhHHHHHHHHHcc
Q 006615          455 KKADAALKAFHDDRTLCGPI-SKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFS----GIVP-DVQTFSGLMYHFALQ  528 (638)
Q Consensus       455 g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~li~~~~~~  528 (638)
                      |++++|...+++........ ..+....++..+...|...|++++|.+.+++..+.    +-.+ ...++..+...|...
T Consensus       277 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~  356 (411)
T 4a1s_A          277 GQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAI  356 (411)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred             cCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHh
Confidence            99999999999876543211 11222467888999999999999999999988663    1111 244788888999999


Q ss_pred             CCHHHHHHHHHHHHhC
Q 006615          529 GDEKIVQKLFSMVRQN  544 (638)
Q Consensus       529 g~~~~a~~l~~~m~~~  544 (638)
                      |++++|.+.+++..+.
T Consensus       357 g~~~~A~~~~~~al~~  372 (411)
T 4a1s_A          357 GGHERALKYAEQHLQL  372 (411)
T ss_dssp             TCHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHH
Confidence            9999999999988764

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.24  E-value=1.9e-10  Score=113.02  Aligned_cols=139  Identities=10%  Similarity=-0.085  Sum_probs=103.6

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCC-cchhH
Q 006615          406 VYALEKMLTILARHGHVELVDRLIAKLRSD----GMRL-PFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPI-SKFKL  479 (638)
Q Consensus       406 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~  479 (638)
                      ...+..+...+...|++++|.+.+++..+.    +..+ ...++..+...|...|++++|...+++..+..... ..+..
T Consensus       183 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  262 (338)
T 3ro2_A          183 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE  262 (338)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHH
Confidence            345777788888999999999998887643    1111 12367778888999999999999998876542221 12222


Q ss_pred             HHHHHHHHHHHHccCChHHHHHHHHHHHhC----CCCc-chhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006615          480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFS----GIVP-DVQTFSGLMYHFALQGDEKIVQKLFSMVRQN  544 (638)
Q Consensus       480 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~  544 (638)
                      ..++..+...+...|++++|.+.+++..+.    +-.+ ...++..+...|...|++++|.+.+++..+.
T Consensus       263 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  332 (338)
T 3ro2_A          263 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI  332 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            467888999999999999999999988653    1111 1447788889999999999999999998864

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.23  E-value=1e-09  Score=107.82  Aligned_cols=279  Identities=12%  Similarity=0.010  Sum_probs=182.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC----HHhHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-CHHHH
Q 006615          140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLS----TESYNIVMSVYAKTGKNFEAVETFRQVIDE----GAIP-NSRTY  210 (638)
Q Consensus       140 ~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~ty  210 (638)
                      +......+...|++++|...|++..+.+ +.+    ...|..+...+...|++++|.+.+++..+.    +-.| ...++
T Consensus         8 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~   86 (338)
T 3ro2_A            8 LALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS   86 (338)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence            3344566677777777777777776653 222    355667777777777777777777765442    1111 24556


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHhcccCCC-ccC----HhHHHHHHHHHHccCC--------------------HHHHHHHH
Q 006615          211 TVMIEHLVNLGKLDSALEVFSALPLMRI-KRT----SKQYLILVEGFVGVER--------------------FDEAKSLL  265 (638)
Q Consensus       211 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~--------------------~~~A~~l~  265 (638)
                      ..+...|...|++++|.+.+++..+..- .++    ..++..+...+...|+                    +++|.+.+
T Consensus        87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~  166 (338)
T 3ro2_A           87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY  166 (338)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence            6677777778888888877776543110 011    3467777788888888                    88888888


Q ss_pred             HHHHhC----CCCCCHH--HHHHHHHHHHcCChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCCCcccccccc
Q 006615          266 NEMRDD----GKFPGRA--MRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQ  339 (638)
Q Consensus       266 ~~m~~~----g~~p~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (638)
                      ++....    +..+...  ...+...+...|++++|...+++....                                  
T Consensus       167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----------------------------------  212 (338)
T 3ro2_A          167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI----------------------------------  212 (338)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------------------------------
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH----------------------------------
Confidence            776432    2112111  225566778888888888888765210                                  


Q ss_pred             ccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhc
Q 006615          340 LKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARH  419 (638)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~  419 (638)
                                                                           ....   .........+..+...+...
T Consensus       213 -----------------------------------------------------~~~~---~~~~~~~~~~~~l~~~~~~~  236 (338)
T 3ro2_A          213 -----------------------------------------------------AKEF---GDKAAERRAYSNLGNAYIFL  236 (338)
T ss_dssp             -----------------------------------------------------HHHH---TCHHHHHHHHHHHHHHHHHH
T ss_pred             -----------------------------------------------------HHhc---CChHHHHHHHHHHHHHHHHc
Confidence                                                                 0000   00011234677788889999


Q ss_pred             CChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCc-chhHHHHHHHHHHHHHcc
Q 006615          420 GHVELVDRLIAKLRSDGMR-LP----FSTIRLIIDFYGISKKADAALKAFHDDRTLCGPIS-KFKLMLLYSSLLRTLTKC  493 (638)
Q Consensus       420 g~~~~a~~l~~~m~~~g~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~  493 (638)
                      |++++|.+.+++....... .+    ..++..+...|...|++++|...+++..+...... .+....++..+...|.+.
T Consensus       237 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~  316 (338)
T 3ro2_A          237 GEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTAL  316 (338)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHc
Confidence            9999999999887643111 11    45677788899999999999999998765422111 222245788899999999


Q ss_pred             CChHHHHHHHHHHHhC
Q 006615          494 KRDFDAINVLEEMIFS  509 (638)
Q Consensus       494 g~~~~A~~l~~~m~~~  509 (638)
                      |++++|.+.+++..+.
T Consensus       317 g~~~~A~~~~~~a~~~  332 (338)
T 3ro2_A          317 GNHDQAMHFAEKHLEI  332 (338)
T ss_dssp             TCHHHHHHHHHHHHHC
T ss_pred             CChHHHHHHHHHHHHH
Confidence            9999999999998874

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.20  E-value=1.2e-08  Score=99.08  Aligned_cols=85  Identities=16%  Similarity=0.142  Sum_probs=51.4

Q ss_pred             cCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCC-CCcc--hhhHHHHHHHHHccCC
Q 006615          454 SKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSG-IVPD--VQTFSGLMYHFALQGD  530 (638)
Q Consensus       454 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~--~~t~~~li~~~~~~g~  530 (638)
                      .|++++|..+|+...+.     .|+....|..++..+.+.|+.++|..+|++..... +.|+  ...|..++....+.|+
T Consensus       182 ~~~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~  256 (308)
T 2ond_A          182 SKDKSVAFKIFELGLKK-----YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD  256 (308)
T ss_dssp             SCCHHHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSC
T ss_pred             cCCHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCC
Confidence            45555555555555443     22223566666666667777777777777776642 3442  4456666666666777


Q ss_pred             HHHHHHHHHHHHh
Q 006615          531 EKIVQKLFSMVRQ  543 (638)
Q Consensus       531 ~~~a~~l~~~m~~  543 (638)
                      .++|..+++++.+
T Consensus       257 ~~~a~~~~~~a~~  269 (308)
T 2ond_A          257 LASILKVEKRRFT  269 (308)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            7777777766665

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.19  E-value=7.9e-10  Score=114.33  Aligned_cols=216  Identities=11%  Similarity=0.073  Sum_probs=178.9

Q ss_pred             ChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCCh-HHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHH
Q 006615           81 NADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRN-HELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLST  159 (638)
Q Consensus        81 ~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~-~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l  159 (638)
                      .+++++..++......  ..+...+..+...+...|++ ++|...|++..+.. +.+...|..+...|.+.|++++|...
T Consensus        83 ~~~~al~~l~~~~~~~--~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~  159 (474)
T 4abn_A           83 EMEKTLQQMEEVLGSA--QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTC  159 (474)
T ss_dssp             HHHHHHHHHHHHHTTC--CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhccC--chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            3677888888777543  34666888888999999999 99999999988753 34577899999999999999999999


Q ss_pred             HHHHHhcCCCCCHHhHHHHHHHHHhc---------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc--------CC
Q 006615          160 WNEYRQRAKLLSTESYNIVMSVYAKT---------GKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL--------GK  222 (638)
Q Consensus       160 ~~~m~~~~~~p~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~--------g~  222 (638)
                      |++..+.+  |+..+|..+...+...         |++++|.+.|++..+... -+...|..+...|...        |+
T Consensus       160 ~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~~~~g~  236 (474)
T 4abn_A          160 FSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRSWYILGNAYLSLYFNTGQNPKI  236 (474)
T ss_dssp             HHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred             HHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhhccccch
Confidence            99999865  7788899999999999         999999999999998632 2688899999999998        99


Q ss_pred             HHHHHHHHHhcccCCCc--cCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHH
Q 006615          223 LDSALEVFSALPLMRIK--RTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLR  300 (638)
Q Consensus       223 ~~~A~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~  300 (638)
                      +++|.+.|++..+..-.  -+...|..+..+|...|++++|.+.|++..+...........+...+...|++++|.+.+.
T Consensus       237 ~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~  316 (474)
T 4abn_A          237 SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKG  316 (474)
T ss_dssp             HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999998874210  3788899999999999999999999999987654333344577778888888888887665


Q ss_pred             Hh
Q 006615          301 EM  302 (638)
Q Consensus       301 ~~  302 (638)
                      .+
T Consensus       317 ~~  318 (474)
T 4abn_A          317 KT  318 (474)
T ss_dssp             TC
T ss_pred             cc
Confidence            54

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.19  E-value=2e-10  Score=111.74  Aligned_cols=134  Identities=15%  Similarity=0.127  Sum_probs=80.2

Q ss_pred             hHhHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHc------CC
Q 006615          137 SVNFMNLMQWYSTSGDLELVLSTWNEYRQR-------AKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE------GA  203 (638)
Q Consensus       137 ~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~-------~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~  203 (638)
                      ..++..+...|...|++++|..+|+++.+.       +.+....++..+...|...|++++|.+.|++..+.      +-
T Consensus        27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  106 (311)
T 3nf1_A           27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD  106 (311)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence            445666677777777777777777776652       22233455666777777777777777777766543      11


Q ss_pred             CC-CHHHHHHHHHHHHHcCCHHHHHHHHHhcccC------CCcc-CHhHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006615          204 IP-NSRTYTVMIEHLVNLGKLDSALEVFSALPLM------RIKR-TSKQYLILVEGFVGVERFDEAKSLLNEMRD  270 (638)
Q Consensus       204 ~p-~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~  270 (638)
                      .| ...++..+...|...|++++|.+.|++..+.      +-.| ...++..+...+...|++++|.+.|+++..
T Consensus       107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~  181 (311)
T 3nf1_A          107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALE  181 (311)
T ss_dssp             CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            12 2445555666666666666666666655432      1112 234556666666666777777666666543

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.19  E-value=6.1e-09  Score=106.90  Aligned_cols=343  Identities=10%  Similarity=0.038  Sum_probs=199.0

Q ss_pred             HHHHcCCCh---hHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcC-----ChHHHHHHHHHHHhCCCCCchHhHHHHHH
Q 006615           74 HALRSAPNA---DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQ-----RNHELKTLIGDISSSKFLNVSVNFMNLMQ  145 (638)
Q Consensus        74 ~~l~~~~~~---~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-----~~~~a~~l~~~~~~~~~~~~~~~~~~ll~  145 (638)
                      ..+...|.+   ++|+..|+.....     ++..+..+...+...+     +.++|...|++..+.|...   .+..|..
T Consensus        43 ~~y~~~g~~~d~~~A~~~~~~A~~~-----~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~  114 (452)
T 3e4b_A           43 DIQVGTRDPAQIKQAEATYRAAADT-----SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGN---TLIPLAM  114 (452)
T ss_dssp             ---------------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSS---CHHHHHH
T ss_pred             HHHHccCCCCCHHHHHHHHHHHHhC-----CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHH---HHHHHHH
Confidence            344456666   8999999988743     3335666666455544     7889999999988866432   5677888


Q ss_pred             HHHhcCCHH---HHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-
Q 006615          146 WYSTSGDLE---LVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLG-  221 (638)
Q Consensus       146 ~~~~~g~~~---~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g-  221 (638)
                      .|...+..+   .+.+.+......|   +...+..|...|...+.++++........+.-...+...+..|...|.+.| 
T Consensus       115 ~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~  191 (452)
T 3e4b_A          115 LYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQ  191 (452)
T ss_dssp             HHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTC
T ss_pred             HHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence            887776544   3455555555555   356777788888888866555555444433222234448888888999999 


Q ss_pred             --CHHHHHHHHHhcccCCCccCHhHHHHHHHHHHcc----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-H--HHcCCh
Q 006615          222 --KLDSALEVFSALPLMRIKRTSKQYLILVEGFVGV----ERFDEAKSLLNEMRDDGKFPGRAMRVALER-M--QEMGFI  292 (638)
Q Consensus       222 --~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~----g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~-~--~~~g~~  292 (638)
                        +.++|.+.|++..+.| .++...+..|...|...    +++++|.+.|++.. .|..  ...+.+-.. +  ...++.
T Consensus       192 ~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g~~--~a~~~Lg~~~~~~~~~~d~  267 (452)
T 3e4b_A          192 PEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PGYP--ASWVSLAQLLYDFPELGDV  267 (452)
T ss_dssp             HHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GGST--HHHHHHHHHHHHSGGGCCH
T ss_pred             cccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CCCH--HHHHHHHHHHHhCCCCCCH
Confidence              9999999999998877 45666667777777665    79999999999987 3221  223333333 2  346677


Q ss_pred             HHHHHHHHHhCcCccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccc
Q 006615          293 QGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWT  372 (638)
Q Consensus       293 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (638)
                      ++|..+|++...                                                                    
T Consensus       268 ~~A~~~~~~Aa~--------------------------------------------------------------------  279 (452)
T 3e4b_A          268 EQMMKYLDNGRA--------------------------------------------------------------------  279 (452)
T ss_dssp             HHHHHHHHHHHH--------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHH--------------------------------------------------------------------
Confidence            777776665421                                                                    


Q ss_pred             hHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcC-----ChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006615          373 TRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHG-----HVELVDRLIAKLRSDGMRLPFSTIRLI  447 (638)
Q Consensus       373 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-----~~~~a~~l~~~m~~~g~~~~~~~~~~l  447 (638)
                                                 .|   +...+..+-..|. .|     ++++|.+.|++.. .|   +......|
T Consensus       280 ---------------------------~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~L  324 (452)
T 3e4b_A          280 ---------------------------AD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYL  324 (452)
T ss_dssp             ---------------------------TT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHH
T ss_pred             ---------------------------CC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHH
Confidence                                       11   3444445555554 33     6777777777666 33   45555555


Q ss_pred             HHHHcc----cCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHc----cCChHHHHHHHHHHHhCCCCcchhhHH
Q 006615          448 IDFYGI----SKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTK----CKRDFDAINVLEEMIFSGIVPDVQTFS  519 (638)
Q Consensus       448 i~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~  519 (638)
                      -..|..    ..+.++|...|+...+.+.       ...+..|...|..    ..+.++|...|+...+.|. ++.....
T Consensus       325 g~~y~~G~g~~~d~~~A~~~~~~Aa~~g~-------~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~-~~a~~~l  396 (452)
T 3e4b_A          325 GQIYRRGYLGKVYPQKALDHLLTAARNGQ-------NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT-PEANDLA  396 (452)
T ss_dssp             HHHHHTTTTSSCCHHHHHHHHHHHHTTTC-------TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC-HHHHHHH
T ss_pred             HHHHHCCCCCCcCHHHHHHHHHHHHhhCh-------HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC-HHHHHHH
Confidence            555554    3477778887777654321       1345555555553    4577888888888887764 3333333


Q ss_pred             HHHHHHHccCCHHHHHHHHHHHH
Q 006615          520 GLMYHFALQGDEKIVQKLFSMVR  542 (638)
Q Consensus       520 ~li~~~~~~g~~~~a~~l~~~m~  542 (638)
                      ..+......++.++|.++.++-.
T Consensus       397 ~~l~~~~~~~~~~~a~~~~~~~~  419 (452)
T 3e4b_A          397 TQLEAPLTPAQRAEGQRLVQQEL  419 (452)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHH
Confidence            33333334445666766666544

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.18  E-value=5.1e-09  Score=93.00  Aligned_cols=165  Identities=13%  Similarity=0.118  Sum_probs=107.8

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH
Q 006615          102 QSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSV  181 (638)
Q Consensus       102 ~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~  181 (638)
                      ..+|..+...+...|++++|...|++..+.. +.+...+..+...|.+.|++++|...++...... +.+...+..+...
T Consensus         5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~   82 (184)
T 3vtx_A            5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA   82 (184)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence            4466667777777777777777777766543 3345566667777777777777777777766553 3345566666666


Q ss_pred             HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHH
Q 006615          182 YAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEA  261 (638)
Q Consensus       182 ~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A  261 (638)
                      +...++++.|.+.+.+..+... -+...+..+...|.+.|++++|.+.|++..+.. +.+..+|..+..+|.+.|++++|
T Consensus        83 ~~~~~~~~~a~~~~~~a~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A  160 (184)
T 3vtx_A           83 NFMIDEKQAAIDALQRAIALNT-VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEA  160 (184)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHH
Confidence            6777777777777777666421 245666666677777777777777777665532 22456667777777777777777


Q ss_pred             HHHHHHHHh
Q 006615          262 KSLLNEMRD  270 (638)
Q Consensus       262 ~~l~~~m~~  270 (638)
                      .+.|++..+
T Consensus       161 ~~~~~~al~  169 (184)
T 3vtx_A          161 VKYFKKALE  169 (184)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            777777655

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.17  E-value=6.5e-07  Score=95.25  Aligned_cols=458  Identities=9%  Similarity=0.002  Sum_probs=261.7

Q ss_pred             hhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCC---HHHHHH
Q 006615           82 ADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGD---LELVLS  158 (638)
Q Consensus        82 ~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~---~~~A~~  158 (638)
                      ..+.+..|+.....+  +.|...|..++..+.+.+.++.+..+|+++... ++.....|...+..-.+.|+   ++.+..
T Consensus        48 ~~d~i~~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~  124 (679)
T 4e6h_A           48 ESDVIGKLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEP  124 (679)
T ss_dssp             CSCHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred             CHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence            344454555544432  357779999999999999999999999999876 45666778888888888888   999999


Q ss_pred             HHHHHHhcC-CCCCHHhHHHHHHHHHhcCCh--------HHHHHHHHHHHH-cCC-CCC-HHHHHHHHHHHH--------
Q 006615          159 TWNEYRQRA-KLLSTESYNIVMSVYAKTGKN--------FEAVETFRQVID-EGA-IPN-SRTYTVMIEHLV--------  218 (638)
Q Consensus       159 l~~~m~~~~-~~p~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~~-~g~-~p~-~~ty~~li~~~~--------  218 (638)
                      +|++..... ..|++..|...+.-..+.++.        +.+.++|+.... .|. .|+ ...|...+....        
T Consensus       125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~  204 (679)
T 4e6h_A          125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF  204 (679)
T ss_dssp             HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence            999998763 248899998888776665543        334477877665 366 564 456766665432        


Q ss_pred             -HcCCHHHHHHHHHhcccCCCccCHhHHHHH---HHHHHc----------cCCHHHHHHHHHHHHh--CCCC---CCHH-
Q 006615          219 -NLGKLDSALEVFSALPLMRIKRTSKQYLIL---VEGFVG----------VERFDEAKSLLNEMRD--DGKF---PGRA-  278 (638)
Q Consensus       219 -~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l---i~~~~~----------~g~~~~A~~l~~~m~~--~g~~---p~~~-  278 (638)
                       ..++++.+.++|+.........-..+|...   ...+..          ..+++.|...+.++..  .++.   |... 
T Consensus       205 eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~  284 (679)
T 4e6h_A          205 EEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLN  284 (679)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSST
T ss_pred             HHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccc
Confidence             344578889999988753221122334322   221100          0122333333333211  1110   0000 


Q ss_pred             H--HHHHHHHHHcCChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcC
Q 006615          279 M--RVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEW  356 (638)
Q Consensus       279 ~--~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (638)
                      .  ...+-..  .........+|.....-                  +.  .           ....++.....+-+...
T Consensus       285 ~~~~~~~p~~--~~~~~~ql~lW~~yi~f------------------Ek--~-----------~~~~l~~~~~~~Rv~~~  331 (679)
T 4e6h_A          285 QATESNLPKP--NEYDVQQLLIWLEWIRW------------------ES--D-----------NKLELSDDLHKARMTYV  331 (679)
T ss_dssp             TCCTTTSCCT--TCCCHHHHHHHHHHHHH------------------HH--T-----------CTTCCCHHHHHHHHHHH
T ss_pred             cchhccCCCC--chhHHHHHHHHHHHHHH------------------HH--h-----------CCccccchhhHHHHHHH
Confidence            0  0000000  00000111111111000                  00  0           00000000000000000


Q ss_pred             CHHHHHHhhcCCcccchHHHHHHHhccCChhHHH-HHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 006615          357 SPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAW-HFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSD  435 (638)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~  435 (638)
                      +...+.........|  ...+..+...++.++|. ++|......  ++.+...|-..+...-+.|+++.|.++|+.+...
T Consensus       332 Ye~aL~~~p~~~~lW--~~ya~~~~~~~~~~~a~r~il~rAi~~--~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~  407 (679)
T 4e6h_A          332 YMQAAQHVCFAPEIW--FNMANYQGEKNTDSTVITKYLKLGQQC--IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDR  407 (679)
T ss_dssp             HHHHHHHTTTCHHHH--HHHHHHHHHHSCCTTHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCHHHH--HHHHHHHHhcCcHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            111111111111122  22344455567778886 888887532  2345566777888888889999999999988754


Q ss_pred             CC---------CCC------------HHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHcc-
Q 006615          436 GM---------RLP------------FSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKC-  493 (638)
Q Consensus       436 g~---------~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-  493 (638)
                      ..         .|+            ..+|...+....+.|..+.|.++|....+..+. ..+   ..|-..+..-.+. 
T Consensus       408 l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~---~lyi~~A~lE~~~~  483 (679)
T 4e6h_A          408 IHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL-VTP---DIYLENAYIEYHIS  483 (679)
T ss_dssp             HHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCT---HHHHHHHHHHHTTT
T ss_pred             HHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CCh---HHHHHHHHHHHHhC
Confidence            10         132            235667777777788899999999987764111 112   2333322223333 


Q ss_pred             CChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHHhhhCCCCCCH
Q 006615          494 KRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDA  573 (638)
Q Consensus       494 g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~m~~~g~~p~~  573 (638)
                      ++.+.|.++|+...+. +.-+...|...+.-....|+.+.|..+|+......-.+.                     -..
T Consensus       484 ~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~---------------------~~~  541 (679)
T 4e6h_A          484 KDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSH---------------------LLK  541 (679)
T ss_dssp             SCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTT---------------------HHH
T ss_pred             CCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHH---------------------HHH
Confidence            4588999999988775 223455566777777788999999999998887531111                     124


Q ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHHccCC
Q 006615          574 ATKELLKKSLWKEGRRKEAAAVEERCEKINDV  605 (638)
Q Consensus       574 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~  605 (638)
                      ..|...+..-.+.|+.+.+.++.+++.+..+.
T Consensus       542 ~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~  573 (679)
T 4e6h_A          542 MIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE  573 (679)
T ss_dssp             HHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            56788888888999999999999999998764

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.17  E-value=3.7e-09  Score=93.94  Aligned_cols=167  Identities=12%  Similarity=0.139  Sum_probs=142.0

Q ss_pred             CchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006615          135 NVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMI  214 (638)
Q Consensus       135 ~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li  214 (638)
                      .+..+|..+...|.+.|++++|...|++..+.+ +-+..+|..+..+|.+.|++++|.+.+......... +...+..+.
T Consensus         3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~   80 (184)
T 3vtx_A            3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILG   80 (184)
T ss_dssp             -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHH
Confidence            356779999999999999999999999999875 457889999999999999999999999999886432 677788888


Q ss_pred             HHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHH
Q 006615          215 EHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQG  294 (638)
Q Consensus       215 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~  294 (638)
                      ..+...++++.|.+.+.+..+.. +.+...+..+...|.+.|++++|++.|++..+........++.+...+.+.|++++
T Consensus        81 ~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~  159 (184)
T 3vtx_A           81 SANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE  159 (184)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence            88999999999999999887643 33677899999999999999999999999987654333344588899999999999


Q ss_pred             HHHHHHHhCc
Q 006615          295 ANEFLREMLP  304 (638)
Q Consensus       295 a~~~~~~~~~  304 (638)
                      |.+.|++..+
T Consensus       160 A~~~~~~al~  169 (184)
T 3vtx_A          160 AVKYFKKALE  169 (184)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999998753

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.16  E-value=9e-09  Score=99.97  Aligned_cols=215  Identities=10%  Similarity=0.045  Sum_probs=166.3

Q ss_pred             hHHHHHHHHHHcCCCCCCChhHHHHHHHHHH-------hcCCh-------HHHHHHHHHHHhCCCCCchHhHHHHHHHHH
Q 006615           83 DSALSIMEALKSNPNFSHNQSTLHALATVLA-------KSQRN-------HELKTLIGDISSSKFLNVSVNFMNLMQWYS  148 (638)
Q Consensus        83 ~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~-------~~~~~-------~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~  148 (638)
                      ++|+.+|+.+....  +.+...|..+...+.       ..|++       ++|..+|++..+.-.+.+...|..+...+.
T Consensus        33 ~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~  110 (308)
T 2ond_A           33 KRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE  110 (308)
T ss_dssp             HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            68889999888653  334557777777765       35776       899999999987422445668999999999


Q ss_pred             hcCCHHHHHHHHHHHHhcCCCCC-HH-hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HcCCHHH
Q 006615          149 TSGDLELVLSTWNEYRQRAKLLS-TE-SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLV-NLGKLDS  225 (638)
Q Consensus       149 ~~g~~~~A~~l~~~m~~~~~~p~-~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~-~~g~~~~  225 (638)
                      +.|++++|..+|++..+..  |+ .. .|..+...+.+.|++++|..+|++..+... ++...|........ ..|+.++
T Consensus       111 ~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~  187 (308)
T 2ond_A          111 SRMKYEKVHSIYNRLLAIE--DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSV  187 (308)
T ss_dssp             HTTCHHHHHHHHHHHHTSS--SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHH
T ss_pred             hcCCHHHHHHHHHHHHhcc--ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHH
Confidence            9999999999999998853  43 43 899999999999999999999999988532 34455543333322 2699999


Q ss_pred             HHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCC-CCCC--H-HHHHHHHHHHHcCChHHHHHHHHH
Q 006615          226 ALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG-KFPG--R-AMRVALERMQEMGFIQGANEFLRE  301 (638)
Q Consensus       226 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~--~-~~~~ll~~~~~~g~~~~a~~~~~~  301 (638)
                      |.++|++..+.. +-+...|..++..+.+.|++++|..+|++..... +.|+  . .+...+....+.|+.+.|..++++
T Consensus       188 A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~  266 (308)
T 2ond_A          188 AFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR  266 (308)
T ss_dssp             HHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            999999887632 2357889999999999999999999999998874 4553  2 333667777889999999999988


Q ss_pred             hC
Q 006615          302 ML  303 (638)
Q Consensus       302 ~~  303 (638)
                      ..
T Consensus       267 a~  268 (308)
T 2ond_A          267 RF  268 (308)
T ss_dssp             HH
T ss_pred             HH
Confidence            75

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.16  E-value=4.7e-09  Score=105.59  Aligned_cols=234  Identities=9%  Similarity=0.021  Sum_probs=156.8

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhcccC----C--CccCHhHHH
Q 006615          178 VMSVYAKTGKNFEAVETFRQVIDE----GAIP-NSRTYTVMIEHLVNLGKLDSALEVFSALPLM----R--IKRTSKQYL  246 (638)
Q Consensus       178 li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~----g--~~p~~~~~~  246 (638)
                      ....+...|++++|.+.|++..+.    +-.+ ...+|..+...|...|++++|.+.+++..+.    +  ......+++
T Consensus       109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  188 (383)
T 3ulq_A          109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS  188 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence            344566777788887777777653    1111 2356667777777788877777777765431    1  011245677


Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHhCCCC-CCH-----HHHHHHHHHHHcCChHHHHHHHHHhCcCccccccccccCCCCC
Q 006615          247 ILVEGFVGVERFDEAKSLLNEMRDDGKF-PGR-----AMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDD  320 (638)
Q Consensus       247 ~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~-----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  320 (638)
                      .+...|...|++++|.+.|++..+.... ++.     ..+.+...+...|++++|...+++...                
T Consensus       189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~----------------  252 (383)
T 3ulq_A          189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIA----------------  252 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------------
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----------------
Confidence            7888888888888888888877542111 111     223566777788888888887766521                


Q ss_pred             ccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCC
Q 006615          321 DEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQP  400 (638)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  400 (638)
                                                                                             ++.    ..
T Consensus       253 -----------------------------------------------------------------------~~~----~~  257 (383)
T 3ulq_A          253 -----------------------------------------------------------------------VFE----ES  257 (383)
T ss_dssp             -----------------------------------------------------------------------HHH----HT
T ss_pred             -----------------------------------------------------------------------HHH----hh
Confidence                                                                                   000    01


Q ss_pred             CC-cCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHcccCC---HHHHHHHHHhchhccC
Q 006615          401 GY-THDVYALEKMLTILARHGHVELVDRLIAKLRSD----GMRLPFSTIRLIIDFYGISKK---ADAALKAFHDDRTLCG  472 (638)
Q Consensus       401 ~~-~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~  472 (638)
                      +. .....++..+...+.+.|++++|.+.+++....    +-......+..+...|...|+   +++|..+++...    
T Consensus       258 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~----  333 (383)
T 3ulq_A          258 NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM----  333 (383)
T ss_dssp             TCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT----
T ss_pred             ccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc----
Confidence            11 123556788888999999999999999887643    211122345677788899998   888888888752    


Q ss_pred             CCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 006615          473 PISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIF  508 (638)
Q Consensus       473 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~  508 (638)
                        ..+.....+..+...|.+.|++++|.+.|++..+
T Consensus       334 --~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~  367 (383)
T 3ulq_A          334 --LYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ  367 (383)
T ss_dssp             --CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             --CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence              2444456788899999999999999999998865

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.15  E-value=1.3e-08  Score=101.97  Aligned_cols=316  Identities=9%  Similarity=-0.072  Sum_probs=202.4

Q ss_pred             CCCchHhHHHHHHHH--HhcCCHHHHHHHHHHHHhc--CCC--CCHHhHHHHHHH--HHhcCChHHHH---------HHH
Q 006615          133 FLNVSVNFMNLMQWY--STSGDLELVLSTWNEYRQR--AKL--LSTESYNIVMSV--YAKTGKNFEAV---------ETF  195 (638)
Q Consensus       133 ~~~~~~~~~~ll~~~--~~~g~~~~A~~l~~~m~~~--~~~--p~~~~~~~li~~--~~~~g~~~~A~---------~~~  195 (638)
                      ..|+..+-+.|-.+|  .+.+++++|..+++++.+.  .+.  +++..|-.++..  ..-.+.+..+.         +.+
T Consensus         6 ~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l   85 (378)
T 3q15_A            6 AIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELL   85 (378)
T ss_dssp             CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHH
Confidence            345666666677777  7888888888888877553  121  223334444332  11112222222         555


Q ss_pred             HHHHHcCCCCC-HH---HHHHHHHHHHHcCCHHHHHHHHHhcccCCC-cc----CHhHHHHHHHHHHccCCHHHHHHHHH
Q 006615          196 RQVIDEGAIPN-SR---TYTVMIEHLVNLGKLDSALEVFSALPLMRI-KR----TSKQYLILVEGFVGVERFDEAKSLLN  266 (638)
Q Consensus       196 ~~m~~~g~~p~-~~---ty~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p----~~~~~~~li~~~~~~g~~~~A~~l~~  266 (638)
                      +.+.......+ ..   .|-.....+...|++++|.+.|++..+..- .+    ...++..+...|...|++++|...++
T Consensus        86 ~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~  165 (378)
T 3q15_A           86 ETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHIL  165 (378)
T ss_dssp             HHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence            55443211101 11   122233446688999999999988764311 12    24567888889999999999999988


Q ss_pred             HHHhCCC-----CCCHH-H-HHHHHHHHHcCChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCCCcccccccc
Q 006615          267 EMRDDGK-----FPGRA-M-RVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQ  339 (638)
Q Consensus       267 ~m~~~g~-----~p~~~-~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (638)
                      +......     .+... . ..+...+...|++++|.+.+++...                                   
T Consensus       166 ~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~-----------------------------------  210 (378)
T 3q15_A          166 QALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALE-----------------------------------  210 (378)
T ss_dssp             HHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------------------------------
T ss_pred             HHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-----------------------------------
Confidence            8754211     11111 2 2556777888888888888776521                                   


Q ss_pred             ccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCC-cCCHHHHHHHHHHHHh
Q 006615          340 LKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGY-THDVYALEKMLTILAR  418 (638)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~p~~~~~~~li~~~~~  418 (638)
                                                                          +...    .+- .....++..+..+|..
T Consensus       211 ----------------------------------------------------~~~~----~~~~~~~~~~~~~lg~~y~~  234 (378)
T 3q15_A          211 ----------------------------------------------------LAMD----IQNDRFIAISLLNIANSYDR  234 (378)
T ss_dssp             ----------------------------------------------------HHHH----TTCHHHHHHHHHHHHHHHHH
T ss_pred             ----------------------------------------------------HHHH----cCCHHHHHHHHHHHHHHHHH
Confidence                                                                0000    000 1123457778888999


Q ss_pred             cCChHHHHHHHHHHHH-----cCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHcc
Q 006615          419 HGHVELVDRLIAKLRS-----DGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKC  493 (638)
Q Consensus       419 ~g~~~~a~~l~~~m~~-----~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~  493 (638)
                      .|++++|.+.+++...     .... ...++..+...|.+.|++++|...+++..+.......+.....+..+...+...
T Consensus       235 ~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~  313 (378)
T 3q15_A          235 SGDDQMAVEHFQKAAKVSREKVPDL-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKET  313 (378)
T ss_dssp             HTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSS
T ss_pred             CCCHHHHHHHHHHHHHHHHhhCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCC
Confidence            9999999999998776     3332 367788888999999999999999999877655544555445677777778888


Q ss_pred             CC---hHHHHHHHHHHHhCCCCcc-hhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006615          494 KR---DFDAINVLEEMIFSGIVPD-VQTFSGLMYHFALQGDEKIVQKLFSMVRQ  543 (638)
Q Consensus       494 g~---~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~l~~~m~~  543 (638)
                      |+   ..+|+..+++   .+..|+ ...+..+...|...|++++|.+.|++..+
T Consensus       314 ~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~  364 (378)
T 3q15_A          314 VDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK  364 (378)
T ss_dssp             CCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            88   7777777766   333343 34566788899999999999999988764

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.10  E-value=3.6e-09  Score=109.34  Aligned_cols=218  Identities=9%  Similarity=-0.051  Sum_probs=157.3

Q ss_pred             CHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 006615          152 DLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKN-FEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF  230 (638)
Q Consensus       152 ~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~  230 (638)
                      .++++...+++..... +.+...|..+...+...|++ ++|.+.|++..+... -+...|..+...|.+.|++++|.+.|
T Consensus        83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~  160 (474)
T 4abn_A           83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP-ELVEAWNQLGEVYWKKGDVTSAHTCF  160 (474)
T ss_dssp             HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            3566677777665543 34677788888888888888 888888888877532 24778888888888888888888888


Q ss_pred             HhcccCCCccCHhHHHHHHHHHHcc---------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc--------CChH
Q 006615          231 SALPLMRIKRTSKQYLILVEGFVGV---------ERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEM--------GFIQ  293 (638)
Q Consensus       231 ~~m~~~g~~p~~~~~~~li~~~~~~---------g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~--------g~~~  293 (638)
                      ++..+.  .|+...|..+...|...         |++++|.+.|++..+........++.+...+...        |+++
T Consensus       161 ~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~  238 (474)
T 4abn_A          161 SGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ  238 (474)
T ss_dssp             HHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             HHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence            887764  46777788888888888         8888899888888775433333344666666666        6677


Q ss_pred             HHHHHHHHhCcCccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccch
Q 006615          294 GANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTT  373 (638)
Q Consensus       294 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (638)
                      +|...|++....                                                                    
T Consensus       239 ~A~~~~~~al~~--------------------------------------------------------------------  250 (474)
T 4abn_A          239 QALSAYAQAEKV--------------------------------------------------------------------  250 (474)
T ss_dssp             HHHHHHHHHHHH--------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHh--------------------------------------------------------------------
Confidence            777766655210                                                                    


Q ss_pred             HHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcc
Q 006615          374 RLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGI  453 (638)
Q Consensus       374 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~  453 (638)
                                               .+...-+...|..+..+|...|++++|.+.|++..+.... +...+..+..++..
T Consensus       251 -------------------------~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~  304 (474)
T 4abn_A          251 -------------------------DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEF  304 (474)
T ss_dssp             -------------------------CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred             -------------------------CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence                                     0000136777888888999999999999999988876543 55677777778888


Q ss_pred             cCCHHHHHHHHHhc
Q 006615          454 SKKADAALKAFHDD  467 (638)
Q Consensus       454 ~g~~~~A~~~~~~~  467 (638)
                      .|++++|...+..+
T Consensus       305 lg~~~eAi~~~~~~  318 (474)
T 4abn_A          305 LSRLTSLLESKGKT  318 (474)
T ss_dssp             HHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHhccc
Confidence            88888887766654

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.09  E-value=5e-08  Score=97.58  Aligned_cols=136  Identities=13%  Similarity=0.039  Sum_probs=92.5

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHH----HHHHHHcccCCHHHHHHHHHhchhccCCCcchhHH
Q 006615          407 YALEKMLTILARHGHVELVDRLIAKLRSDGMRLP--FSTIR----LIIDFYGISKKADAALKAFHDDRTLCGPISKFKLM  480 (638)
Q Consensus       407 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~--~~~~~----~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  480 (638)
                      ..+..+...+...|++++|...+++.......++  .....    ..+..+...|++++|...++............. .
T Consensus       175 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-~  253 (373)
T 1hz4_A          175 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFL-Q  253 (373)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGG-H
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhh-H
Confidence            4566777788888999999888888764321111  11111    233447788999999999988765432211111 2


Q ss_pred             HHHHHHHHHHHccCChHHHHHHHHHHHh----CCCCcch-hhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006615          481 LLYSSLLRTLTKCKRDFDAINVLEEMIF----SGIVPDV-QTFSGLMYHFALQGDEKIVQKLFSMVRQ  543 (638)
Q Consensus       481 ~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~~-~t~~~li~~~~~~g~~~~a~~l~~~m~~  543 (638)
                      ..+..+...+...|+.++|.+.+++...    .|..++. ..+..+..++...|+.++|...+++...
T Consensus       254 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~  321 (373)
T 1hz4_A          254 GQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK  321 (373)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            3567778889999999999999988754    2322333 2566677788899999999999988765

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.09  E-value=3.8e-09  Score=102.52  Aligned_cols=231  Identities=13%  Similarity=0.121  Sum_probs=158.2

Q ss_pred             HHHHHHHcCCChhHHHHHHHHHHcC------CCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhC------C-CCCch
Q 006615           71 IVTHALRSAPNADSALSIMEALKSN------PNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS------K-FLNVS  137 (638)
Q Consensus        71 ~~~~~l~~~~~~~~Al~~~~~~~~~------~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~------~-~~~~~  137 (638)
                      .+...+...|++++|+..|+.+.+.      +........+..+...+...|++++|...+++..+.      + .+...
T Consensus        32 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  111 (311)
T 3nf1_A           32 NLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVA  111 (311)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHH
Confidence            4667888999999999999988752      011233456888888999999999999999887653      2 23345


Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHHhc------CC-CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHc------CCC
Q 006615          138 VNFMNLMQWYSTSGDLELVLSTWNEYRQR------AK-LLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE------GAI  204 (638)
Q Consensus       138 ~~~~~ll~~~~~~g~~~~A~~l~~~m~~~------~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~  204 (638)
                      ..+..+...|...|++++|...|++..+.      +- +....++..+...+...|++++|.+.|++..+.      +-.
T Consensus       112 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~  191 (311)
T 3nf1_A          112 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDD  191 (311)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTC
T ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence            67888999999999999999999988764      21 224566888899999999999999999998774      223


Q ss_pred             C-CHHHHHHHHHHHHHcCCHHHHHHHHHhcccC-------CCccC-------HhHHHHHHHHHHccCCHHHHHHHHHHHH
Q 006615          205 P-NSRTYTVMIEHLVNLGKLDSALEVFSALPLM-------RIKRT-------SKQYLILVEGFVGVERFDEAKSLLNEMR  269 (638)
Q Consensus       205 p-~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~-------~~~~~~li~~~~~~g~~~~A~~l~~~m~  269 (638)
                      | ...++..+...|...|++++|.+.|++..+.       ...+.       ...+..+...+...+.+.++...+.+..
T Consensus       192 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  271 (311)
T 3nf1_A          192 PNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACK  271 (311)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-------
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcC
Confidence            3 3557888899999999999999999987742       11111       1122333333444555666666666654


Q ss_pred             hCCCCCCH--HHHHHHHHHHHcCChHHHHHHHHHhC
Q 006615          270 DDGKFPGR--AMRVALERMQEMGFIQGANEFLREML  303 (638)
Q Consensus       270 ~~g~~p~~--~~~~ll~~~~~~g~~~~a~~~~~~~~  303 (638)
                      ..  .|+.  ....+...|.+.|++++|...+++..
T Consensus       272 ~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  305 (311)
T 3nf1_A          272 VD--SPTVTTTLKNLGALYRRQGKFEAAETLEEAAM  305 (311)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             CC--CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            42  2332  23467788899999999999888754

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.08  E-value=1.3e-08  Score=90.19  Aligned_cols=163  Identities=16%  Similarity=0.101  Sum_probs=91.6

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHH
Q 006615          104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYA  183 (638)
Q Consensus       104 ~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~  183 (638)
                      .+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...+++..+.. +.+...|..+...+.
T Consensus        10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~   87 (186)
T 3as5_A           10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV   87 (186)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence            34445555555666666666665555432 2334455556666666666666666666655543 334555666666666


Q ss_pred             hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHH
Q 006615          184 KTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKS  263 (638)
Q Consensus       184 ~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~  263 (638)
                      ..|++++|.+.|++..+.. +.+...+..+...+.+.|++++|.+.+++..+.. ..+..++..+...+...|++++|.+
T Consensus        88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~  165 (186)
T 3as5_A           88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP  165 (186)
T ss_dssp             HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence            6666666666666665542 2245555555566666666666666666554432 2234555556666666666666666


Q ss_pred             HHHHHHh
Q 006615          264 LLNEMRD  270 (638)
Q Consensus       264 l~~~m~~  270 (638)
                      .+++..+
T Consensus       166 ~~~~~~~  172 (186)
T 3as5_A          166 HFKKANE  172 (186)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6665543

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.07  E-value=1.9e-06  Score=91.78  Aligned_cols=419  Identities=9%  Similarity=0.007  Sum_probs=266.4

Q ss_pred             HHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCC---hHHHHHHHHHHHhCC-CCCchHhHHHHHHHH
Q 006615           72 VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQR---NHELKTLIGDISSSK-FLNVSVNFMNLMQWY  147 (638)
Q Consensus        72 ~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~l~~~~~~~~-~~~~~~~~~~ll~~~  147 (638)
                      ++..+.+.+.++.+..+|+.+...  ++.....|...+..-.+.++   .+.+..+|++..... .+|++..|..-+...
T Consensus        72 yi~~~~~~~~~~~aR~vyEraL~~--fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~  149 (679)
T 4e6h_A           72 LLKHHVSLKQWKQVYETFDKLHDR--FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYV  149 (679)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHH
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence            667777889999999999999875  34556678888888888888   999999999998754 247888888888776


Q ss_pred             HhcCCH--------HHHHHHHHHHHh-cCC-CC-CHHhHHHHHHHHH---------hcCChHHHHHHHHHHHHcCCCCCH
Q 006615          148 STSGDL--------ELVLSTWNEYRQ-RAK-LL-STESYNIVMSVYA---------KTGKNFEAVETFRQVIDEGAIPNS  207 (638)
Q Consensus       148 ~~~g~~--------~~A~~l~~~m~~-~~~-~p-~~~~~~~li~~~~---------~~g~~~~A~~~~~~m~~~g~~p~~  207 (638)
                      .+.++.        +.+.++|+.... .|. .+ +...|...+.-..         ..++++.+..+|++........-.
T Consensus       150 ~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~  229 (679)
T 4e6h_A          150 RKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLE  229 (679)
T ss_dssp             HHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHH
T ss_pred             HHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHH
Confidence            666554        345578887654 355 44 3567888776543         234577889999998863111112


Q ss_pred             HHHHHH---HHHH----------HHcCCHHHHHHHHHhccc--CCCc---------------c--C------HhHHHHHH
Q 006615          208 RTYTVM---IEHL----------VNLGKLDSALEVFSALPL--MRIK---------------R--T------SKQYLILV  249 (638)
Q Consensus       208 ~ty~~l---i~~~----------~~~g~~~~A~~~~~~m~~--~g~~---------------p--~------~~~~~~li  249 (638)
                      .+|...   -...          -...+++.|...+.++..  .++.               |  +      ...|...+
T Consensus       230 ~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi  309 (679)
T 4e6h_A          230 SMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWI  309 (679)
T ss_dssp             HHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHH
Confidence            333221   1111          011234445555544211  0110               1  0      13455555


Q ss_pred             HHHHccC-------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHH-HHHHHhCcCccccccccccCCCCCc
Q 006615          250 EGFVGVE-------RFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGAN-EFLREMLPDKRIKNVRYYEDGSDDD  321 (638)
Q Consensus       250 ~~~~~~g-------~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~  321 (638)
                      .---..+       ..+.+..+|++....-......++....-+...|+.++|. .++++....  .|            
T Consensus       310 ~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~--~P------------  375 (679)
T 4e6h_A          310 RWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC--IP------------  375 (679)
T ss_dssp             HHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH--CT------------
T ss_pred             HHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh--CC------------
Confidence            4433332       1234566788776654443444555555566778888886 887765210  00            


Q ss_pred             cccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCC-
Q 006615          322 EDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQP-  400 (638)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-  400 (638)
                                                                  .....  ....+......|+++.|.++|+...... 
T Consensus       376 --------------------------------------------~s~~L--wl~~a~~ee~~~~~e~aR~iyek~l~~l~  409 (679)
T 4e6h_A          376 --------------------------------------------NSAVL--AFSLSEQYELNTKIPEIETTILSCIDRIH  409 (679)
T ss_dssp             --------------------------------------------TCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             --------------------------------------------CCHHH--HHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence                                                        00000  1224455566788999999999876421 


Q ss_pred             -------CCcCC------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHc-C-CCCCHHHHHHHHHHHcccCCHHH
Q 006615          401 -------GYTHD------------VYALEKMLTILARHGHVELVDRLIAKLRSD-G-MRLPFSTIRLIIDFYGISKKADA  459 (638)
Q Consensus       401 -------~~~p~------------~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-g-~~~~~~~~~~li~~~~~~g~~~~  459 (638)
                             .-.|+            ...|...+....+.|..+.|..+|....+. + ..+......+.+.- ...++.+.
T Consensus       410 ~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~-~~~~d~e~  488 (679)
T 4e6h_A          410 LDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEY-HISKDTKT  488 (679)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHH-TTTSCCHH
T ss_pred             HHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH-HhCCCHHH
Confidence                   00132            336888888888899999999999999876 3 22223333333332 22355999


Q ss_pred             HHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCc--chhhHHHHHHHHHccCCHHHHHHH
Q 006615          460 ALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVP--DVQTFSGLMYHFALQGDEKIVQKL  537 (638)
Q Consensus       460 A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~t~~~li~~~~~~g~~~~a~~l  537 (638)
                      |.++|+...+..+     +....|...+......|+.+.|..+|++.......+  ....|...+.--.+.|+.+.+..+
T Consensus       489 Ar~ife~~Lk~~p-----~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v  563 (679)
T 4e6h_A          489 ACKVLELGLKYFA-----TDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTL  563 (679)
T ss_dssp             HHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred             HHHHHHHHHHHCC-----CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            9999999887633     223567888888888999999999999998864322  346788888888899999999999


Q ss_pred             HHHHHhCCCCCCHhhHHHHHHHH
Q 006615          538 FSMVRQNGVEPDAYMFKVLIQAY  560 (638)
Q Consensus       538 ~~~m~~~~~~p~~~~~~~li~~~  560 (638)
                      .+++.+.  .|+......+++-|
T Consensus       564 ~~R~~~~--~P~~~~~~~f~~ry  584 (679)
T 4e6h_A          564 EKRFFEK--FPEVNKLEEFTNKY  584 (679)
T ss_dssp             HHHHHHH--STTCCHHHHHHHHT
T ss_pred             HHHHHHh--CCCCcHHHHHHHHh
Confidence            9999985  46655444444433

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.06  E-value=1e-07  Score=95.29  Aligned_cols=178  Identities=13%  Similarity=0.092  Sum_probs=123.4

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHH
Q 006615          407 YALEKMLTILARHGHVELVDRLIAKLRSDGMRL----PFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLL  482 (638)
Q Consensus       407 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  482 (638)
                      ..+..+...+...|++++|...+++........    ...++..+...+...|++++|...+++..........+.....
T Consensus       136 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~  215 (373)
T 1hz4_A          136 FLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWIS  215 (373)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHH
Confidence            456667788899999999999999877543221    2356777888899999999999999987765322222211111


Q ss_pred             H--HHHHHHHHccCChHHHHHHHHHHHhCCCCcc---hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 006615          483 Y--SSLLRTLTKCKRDFDAINVLEEMIFSGIVPD---VQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLI  557 (638)
Q Consensus       483 ~--~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li  557 (638)
                      .  ...+..+...|+.++|.+.+++.......++   ...+..+...+...|++++|.+.++......-           
T Consensus       216 ~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~-----------  284 (373)
T 1hz4_A          216 NANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENAR-----------  284 (373)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----------
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-----------
Confidence            1  1334457799999999999998876432211   23466778899999999999999988765310           


Q ss_pred             HHHHHHhhhCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHcc
Q 006615          558 QAYCKYLSNSNLMPDA-ATKELLKKSLWKEGRRKEAAAVEERCEKIN  603 (638)
Q Consensus       558 ~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~  603 (638)
                              ..|..++. ..+..+..++...|+.++|.+.+++..+..
T Consensus       285 --------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~  323 (373)
T 1hz4_A          285 --------SLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA  323 (373)
T ss_dssp             --------HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             --------hCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence                    11111222 255667788889999999999998877643

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.06  E-value=1e-08  Score=90.78  Aligned_cols=164  Identities=15%  Similarity=0.102  Sum_probs=138.9

Q ss_pred             hHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006615          137 SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH  216 (638)
Q Consensus       137 ~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~  216 (638)
                      ...+..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~   85 (186)
T 3as5_A            8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT   85 (186)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence            3456778889999999999999999988764 4568889999999999999999999999998863 2367888999999


Q ss_pred             HHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHH
Q 006615          217 LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGAN  296 (638)
Q Consensus       217 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~  296 (638)
                      +...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.+++............+.+...+...|++++|.
T Consensus        86 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~  164 (186)
T 3as5_A           86 YVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL  164 (186)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence            999999999999999987643 3467888999999999999999999999998765333234457788899999999999


Q ss_pred             HHHHHhC
Q 006615          297 EFLREML  303 (638)
Q Consensus       297 ~~~~~~~  303 (638)
                      ..++...
T Consensus       165 ~~~~~~~  171 (186)
T 3as5_A          165 PHFKKAN  171 (186)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998875

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.04  E-value=4.5e-08  Score=98.16  Aligned_cols=320  Identities=13%  Similarity=-0.003  Sum_probs=205.7

Q ss_pred             CCCHHhHHHHHHHH--HhcCChHHHHHHHHHHHHc--CCCCC--HHHHHHHHHH--HHHcCCHHHHH---------HHHH
Q 006615          169 LLSTESYNIVMSVY--AKTGKNFEAVETFRQVIDE--GAIPN--SRTYTVMIEH--LVNLGKLDSAL---------EVFS  231 (638)
Q Consensus       169 ~p~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~--g~~p~--~~ty~~li~~--~~~~g~~~~A~---------~~~~  231 (638)
                      .|+..+-+.|-..|  .+.+++++|.+++++..+.  .++.|  ...|-.++..  ..-.+.++.+.         +.++
T Consensus         7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~   86 (378)
T 3q15_A            7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE   86 (378)
T ss_dssp             BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence            45555556666666  7899999999999988663  23333  3333444432  11112222222         5555


Q ss_pred             hcccCCCccCH-h---HHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCCH-----HHHHHHHHHHHcCChHHHHHHHHH
Q 006615          232 ALPLMRIKRTS-K---QYLILVEGFVGVERFDEAKSLLNEMRDDGK-FPGR-----AMRVALERMQEMGFIQGANEFLRE  301 (638)
Q Consensus       232 ~m~~~g~~p~~-~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~-----~~~~ll~~~~~~g~~~~a~~~~~~  301 (638)
                      .+.......+. .   .|......+...|++++|...|++....-. .++.     ..+.+...+...|+++.|...+++
T Consensus        87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~  166 (378)
T 3q15_A           87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ  166 (378)
T ss_dssp             HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence            54331111111 1   223344556788999999999999865421 1232     123566778888998888888776


Q ss_pred             hCcCccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHh
Q 006615          302 MLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLR  381 (638)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (638)
                      ...                                                                             
T Consensus       167 al~-----------------------------------------------------------------------------  169 (378)
T 3q15_A          167 ALD-----------------------------------------------------------------------------  169 (378)
T ss_dssp             HHH-----------------------------------------------------------------------------
T ss_pred             HHH-----------------------------------------------------------------------------
Confidence            521                                                                             


Q ss_pred             ccCChhHHHHHHHHHhcCCCCcC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHcccC
Q 006615          382 HFKSPETAWHFFCWVAYQPGYTH-DVYALEKMLTILARHGHVELVDRLIAKLRSD----GMRL-PFSTIRLIIDFYGISK  455 (638)
Q Consensus       382 ~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g~~~-~~~~~~~li~~~~~~g  455 (638)
                                ++..   ..+..+ ...+++.+..+|...|++++|.+.+++..+.    +..+ ...++..+...|...|
T Consensus       170 ----------~~~~---~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~  236 (378)
T 3q15_A          170 ----------IYQN---HPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSG  236 (378)
T ss_dssp             ----------HHHT---STTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred             ----------HHHh---CCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence                      1110   001111 2456778888999999999999999887642    2111 2356778888999999


Q ss_pred             CHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCC----CCcchhhHHHHHHHHHccCC-
Q 006615          456 KADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSG----IVPDVQTFSGLMYHFALQGD-  530 (638)
Q Consensus       456 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----~~p~~~t~~~li~~~~~~g~-  530 (638)
                      ++++|...|++..+.......|....++..+...+.+.|+.++|.+.+++..+..    -+.....++.+-..+...|+ 
T Consensus       237 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~  316 (378)
T 3q15_A          237 DDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDE  316 (378)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCH
T ss_pred             CHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcH
Confidence            9999999999987633222345546788999999999999999999999987732    11223345666667777888 


Q ss_pred             --HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcc
Q 006615          531 --EKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKIN  603 (638)
Q Consensus       531 --~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~  603 (638)
                        +.+|...++.   .+..|+                      ....+..+...|.+.|++++|.+.+++..+..
T Consensus       317 ~~~~~al~~~~~---~~~~~~----------------------~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~  366 (378)
T 3q15_A          317 RKIHDLLSYFEK---KNLHAY----------------------IEACARSAAAVFESSCHFEQAAAFYRKVLKAQ  366 (378)
T ss_dssp             HHHHHHHHHHHH---TTCHHH----------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh---CCChhH----------------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence              6777776665   221111                      23456778999999999999999999987643

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=98.98  E-value=1.7e-08  Score=108.61  Aligned_cols=161  Identities=13%  Similarity=0.135  Sum_probs=94.1

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHH
Q 006615          103 STLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVY  182 (638)
Q Consensus       103 ~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~  182 (638)
                      ..|+.+..++...|++++|...|++..+.. +.+...|+.|..+|.+.|++++|+..|++..+.+ +-+..+|+.+..+|
T Consensus        10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~l   87 (723)
T 4gyw_A           10 DSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTL   87 (723)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence            356666666666666666666666655532 2334455666666666666666666666665543 23355666666666


Q ss_pred             HhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCcc-CHhHHHHHHHHHHccCCHHH
Q 006615          183 AKTGKNFEAVETFRQVIDEGAIP-NSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKR-TSKQYLILVEGFVGVERFDE  260 (638)
Q Consensus       183 ~~~g~~~~A~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~  260 (638)
                      .+.|++++|.+.|++..+.  .| +...|+.+...|.+.|++++|.+.|++..+.  .| +...|..+...|...|++++
T Consensus        88 ~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~~~  163 (723)
T 4gyw_A           88 KEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDWTD  163 (723)
T ss_dssp             HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCCTT
T ss_pred             HHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccHHH
Confidence            6666666666666666553  23 3555666666666666666666666665543  23 34555666666666666666


Q ss_pred             HHHHHHHHH
Q 006615          261 AKSLLNEMR  269 (638)
Q Consensus       261 A~~l~~~m~  269 (638)
                      |.+.+++..
T Consensus       164 A~~~~~kal  172 (723)
T 4gyw_A          164 YDERMKKLV  172 (723)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            666665553

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.96  E-value=3.1e-08  Score=94.44  Aligned_cols=219  Identities=11%  Similarity=-0.002  Sum_probs=155.8

Q ss_pred             CChhHHHHHHHHHhc------CCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCC-CHHHHHHHHHH
Q 006615          384 KSPETAWHFFCWVAY------QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSD------GMRL-PFSTIRLIIDF  450 (638)
Q Consensus       384 ~~~~~a~~~~~~~~~------~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~------g~~~-~~~~~~~li~~  450 (638)
                      +++++|...|++...      ....+....++..+...|...|++++|...+++....      +-.| ...++..+...
T Consensus        15 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~   94 (283)
T 3edt_B           15 VPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVL   94 (283)
T ss_dssp             SCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence            455555555544432      1122234567889999999999999999999988754      2223 34678888999


Q ss_pred             HcccCCHHHHHHHHHhchhccC---CCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhC------CCCc-chhhHHH
Q 006615          451 YGISKKADAALKAFHDDRTLCG---PISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFS------GIVP-DVQTFSG  520 (638)
Q Consensus       451 ~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p-~~~t~~~  520 (638)
                      |...|++++|...|++......   ....|....+|..+...|...|++++|.+.|++..+.      +-.| ...++..
T Consensus        95 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  174 (283)
T 3edt_B           95 YGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNN  174 (283)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            9999999999999998765421   1113555688999999999999999999999998774      2133 3567888


Q ss_pred             HHHHHHccCCHHHHHHHHHHHHhC-------CCCCCHhhHHHHHHHHHHH----------------hhhCC-CCC-CHHH
Q 006615          521 LMYHFALQGDEKIVQKLFSMVRQN-------GVEPDAYMFKVLIQAYCKY----------------LSNSN-LMP-DAAT  575 (638)
Q Consensus       521 li~~~~~~g~~~~a~~l~~~m~~~-------~~~p~~~~~~~li~~~~~~----------------m~~~g-~~p-~~~~  575 (638)
                      +...|...|++++|.+.++++.+.       ...+....+......+...                ....+ ..| ...+
T Consensus       175 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (283)
T 3edt_B          175 LASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTT  254 (283)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            999999999999999999988763       2334433333333322222                11111 123 2557


Q ss_pred             HHHHHHHHhccCcHHHHHHHHHHHHHc
Q 006615          576 KELLKKSLWKEGRRKEAAAVEERCEKI  602 (638)
Q Consensus       576 ~~~li~~~~~~g~~~~A~~~~~~~~~~  602 (638)
                      +..+...|.+.|++++|.+++++..+.
T Consensus       255 ~~~la~~~~~~g~~~~A~~~~~~al~~  281 (283)
T 3edt_B          255 LRSLGALYRRQGKLEAAHTLEDCASRN  281 (283)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            888999999999999999999997764

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.94  E-value=1.3e-08  Score=97.17  Aligned_cols=225  Identities=14%  Similarity=0.119  Sum_probs=149.5

Q ss_pred             HcCCChhHHHHHHHHHHc------CCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhC------CC-CCchHhHHHH
Q 006615           77 RSAPNADSALSIMEALKS------NPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS------KF-LNVSVNFMNL  143 (638)
Q Consensus        77 ~~~~~~~~Al~~~~~~~~------~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~------~~-~~~~~~~~~l  143 (638)
                      ...|++++|+..|+...+      ..........+..+...+...|++++|...+++..+.      +- +....++..+
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l   91 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL   91 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            445666666666665553      1111224557888888999999999999999887653      22 2345578889


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhc------C-CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCC-CHHH
Q 006615          144 MQWYSTSGDLELVLSTWNEYRQR------A-KLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE------GAIP-NSRT  209 (638)
Q Consensus       144 l~~~~~~g~~~~A~~l~~~m~~~------~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~t  209 (638)
                      ...|...|++++|...|++....      . .+....+|..+...|...|++++|.+.|++..+.      +-.| ...+
T Consensus        92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  171 (283)
T 3edt_B           92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT  171 (283)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            99999999999999999987754      1 1234667888999999999999999999998874      1123 3567


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhcccC-------CCcc-CHhHHHHHHHHHHccCCHHH------HHHHHHHHHhCCCCC
Q 006615          210 YTVMIEHLVNLGKLDSALEVFSALPLM-------RIKR-TSKQYLILVEGFVGVERFDE------AKSLLNEMRDDGKFP  275 (638)
Q Consensus       210 y~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p-~~~~~~~li~~~~~~g~~~~------A~~l~~~m~~~g~~p  275 (638)
                      +..+...|.+.|++++|.+.|++..+.       ...+ ....|..+...+...+....      +...++...  ...|
T Consensus       172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  249 (283)
T 3edt_B          172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACK--VDSP  249 (283)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCC--CCCH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcC--CCCH
Confidence            888889999999999999999887642       1122 22334444444443333222      222222111  1112


Q ss_pred             CHH--HHHHHHHHHHcCChHHHHHHHHHhC
Q 006615          276 GRA--MRVALERMQEMGFIQGANEFLREML  303 (638)
Q Consensus       276 ~~~--~~~ll~~~~~~g~~~~a~~~~~~~~  303 (638)
                      +..  ...+...+...|++++|..++++..
T Consensus       250 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al  279 (283)
T 3edt_B          250 TVNTTLRSLGALYRRQGKLEAAHTLEDCAS  279 (283)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            222  2366788889999999999988754

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=98.93  E-value=3.5e-08  Score=106.26  Aligned_cols=160  Identities=14%  Similarity=0.090  Sum_probs=111.3

Q ss_pred             HHHHHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHH
Q 006615           69 PFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYS  148 (638)
Q Consensus        69 ~~~~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~  148 (638)
                      +..+..++...|++++|++.|++..+..  +-+...+..+..++.+.|++++|...|++..+.. +.+...|..+..+|.
T Consensus        12 l~nLG~~~~~~G~~~eAi~~~~kAl~l~--P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~l~   88 (723)
T 4gyw_A           12 LNNLANIKREQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLK   88 (723)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence            4445666777777777777777776542  2234567777777777777777777777776643 334556777777777


Q ss_pred             hcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 006615          149 TSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIP-NSRTYTVMIEHLVNLGKLDSAL  227 (638)
Q Consensus       149 ~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~  227 (638)
                      +.|++++|++.|++..+.+ +-+..+|+.+..+|.+.|++++|++.|++..+.  .| +...|..+...+...|++++|.
T Consensus        89 ~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~~~A~  165 (723)
T 4gyw_A           89 EMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDWTDYD  165 (723)
T ss_dssp             HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred             HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccHHHHH
Confidence            7777777777777777654 335667777777777777777777777777764  34 4667777777777777777777


Q ss_pred             HHHHhcc
Q 006615          228 EVFSALP  234 (638)
Q Consensus       228 ~~~~~m~  234 (638)
                      +.+++..
T Consensus       166 ~~~~kal  172 (723)
T 4gyw_A          166 ERMKKLV  172 (723)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7776654

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=98.92  E-value=7.7e-08  Score=88.67  Aligned_cols=190  Identities=12%  Similarity=-0.028  Sum_probs=145.6

Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHH
Q 006615          404 HDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLY  483 (638)
Q Consensus       404 p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~  483 (638)
                      .|+..+......+...|++++|.+.|++..+....++...+..+..+|...|++++|...|++..+.     .|+....|
T Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~   79 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK-----NYNLANAY   79 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----TCSHHHHH
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh-----CcchHHHH
Confidence            3567788888899999999999999999998876567777777889999999999999999998865     44445789


Q ss_pred             HHHHHHHHccCChHHHHHHHHHHHhCCCCcc-h-------hhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC---Hhh
Q 006615          484 SSLLRTLTKCKRDFDAINVLEEMIFSGIVPD-V-------QTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPD---AYM  552 (638)
Q Consensus       484 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~-------~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~---~~~  552 (638)
                      ..+...|...|++++|++.|++..+.  .|+ .       ..|..+-..+...|++++|.+.|++..+.  .|+   ...
T Consensus        80 ~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~  155 (228)
T 4i17_A           80 IGKSAAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDA  155 (228)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHH
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHH
Confidence            99999999999999999999999885  343 3       45777788889999999999999999875  565   344


Q ss_pred             HHHHHHHHHHH-------hhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHccCC
Q 006615          553 FKVLIQAYCKY-------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDV  605 (638)
Q Consensus       553 ~~~li~~~~~~-------m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~  605 (638)
                      +..+-..|...       +...+ ..+...|..+.  ....|.+++|.+.+++..+..+.
T Consensus       156 ~~~l~~~~~~~~~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~  212 (228)
T 4i17_A          156 LYSLGVLFYNNGADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPN  212 (228)
T ss_dssp             HHHHHHHHHHHHHHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCC
Confidence            54454444433       11111 12344443333  33567789999999999998753

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.89  E-value=2.8e-07  Score=88.54  Aligned_cols=102  Identities=11%  Similarity=0.033  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHH
Q 006615          407 YALEKMLTILARHGHVELVDRLIAKLRSDGMRLPF------STIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLM  480 (638)
Q Consensus       407 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  480 (638)
                      .++..+...+.+.|++++|...|++..........      ..+..+..++...|++++|...|++..+..+........
T Consensus       159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~  238 (292)
T 1qqe_A          159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRES  238 (292)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------H
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHH
Confidence            45777888899999999999999998876543222      156667778888899999999998877653322211111


Q ss_pred             HHHHHHHHHHH--ccCChHHHHHHHHHHHh
Q 006615          481 LLYSSLLRTLT--KCKRDFDAINVLEEMIF  508 (638)
Q Consensus       481 ~~~~~li~~~~--~~g~~~~A~~l~~~m~~  508 (638)
                      ..+..++..+.  ..+++++|++.|+.+..
T Consensus       239 ~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~  268 (292)
T 1qqe_A          239 NFLKSLIDAVNEGDSEQLSEHCKEFDNFMR  268 (292)
T ss_dssp             HHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence            23444555554  35667777777766544

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.89  E-value=8.1e-08  Score=79.69  Aligned_cols=128  Identities=17%  Similarity=0.267  Sum_probs=81.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 006615          140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVN  219 (638)
Q Consensus       140 ~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~  219 (638)
                      |..+...+...|++++|..+|+++.+.+ +.+...|..+...+...|++++|...|+++.+.+ +.+...+..+...+..
T Consensus         4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~   81 (136)
T 2fo7_A            4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK   81 (136)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence            4556666666677777777776666543 3345566666666666677777777777666543 2245566666666667


Q ss_pred             cCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006615          220 LGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRD  270 (638)
Q Consensus       220 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~  270 (638)
                      .|++++|.+.++++.+.. +.+..++..+...+.+.|++++|...++++..
T Consensus        82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  131 (136)
T 2fo7_A           82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE  131 (136)
T ss_dssp             TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence            777777777776665432 22455666667777777777777777776654

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=98.87  E-value=2.3e-07  Score=85.46  Aligned_cols=189  Identities=12%  Similarity=0.051  Sum_probs=115.6

Q ss_pred             HHHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhc
Q 006615           71 IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTS  150 (638)
Q Consensus        71 ~~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~  150 (638)
                      .....+...|++++|+..|+...+.. -.++...+..+..++...|++++|...+++..+.. +.+...+..+...|.+.
T Consensus        12 ~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~   89 (228)
T 4i17_A           12 NEGNDALNAKNYAVAFEKYSEYLKLT-NNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSAAYRDM   89 (228)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHT-TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHc
Confidence            34456667777777877777776542 12455556667777777777777777777776643 23455667777777777


Q ss_pred             CCHHHHHHHHHHHHhcCCCCCH-------HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHc
Q 006615          151 GDLELVLSTWNEYRQRAKLLST-------ESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPN---SRTYTVMIEHLVNL  220 (638)
Q Consensus       151 g~~~~A~~l~~~m~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~ty~~li~~~~~~  220 (638)
                      |++++|...|++..+.. +.+.       ..|..+...+.+.|++++|.+.|++..+.  .|+   ...|..+...|...
T Consensus        90 ~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~~~~~  166 (228)
T 4i17_A           90 KNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGVLFYNN  166 (228)
T ss_dssp             TCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHHHHHHH
Confidence            77777777777777654 2233       34666666777777777777777777663  444   34555555555444


Q ss_pred             CCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 006615          221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG  272 (638)
Q Consensus       221 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g  272 (638)
                      |+     .+++++...+ ..+...|....  ....+.+++|...|++..+..
T Consensus       167 ~~-----~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~  210 (228)
T 4i17_A          167 GA-----DVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS  210 (228)
T ss_dssp             HH-----HHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred             HH-----HHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence            32     3333333322 12333343333  223455788888888877643

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.77  E-value=2.8e-07  Score=88.55  Aligned_cols=207  Identities=7%  Similarity=0.017  Sum_probs=128.7

Q ss_pred             ChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHh----CCCCCc-hHhHHHHHHHHHhcCCHHH
Q 006615           81 NADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS----SKFLNV-SVNFMNLMQWYSTSGDLEL  155 (638)
Q Consensus        81 ~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~----~~~~~~-~~~~~~ll~~~~~~g~~~~  155 (638)
                      ++++|...|+.+                ...+...|++++|...|.+..+    .|-+++ ..+|+.+..+|.+.|++++
T Consensus        32 ~~~~A~~~~~~a----------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~   95 (292)
T 1qqe_A           32 KFEEAADLCVQA----------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVN   95 (292)
T ss_dssp             HHHHHHHHHHHH----------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             cHHHHHHHHHHH----------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence            377777777665                2345567788888777766543    222221 3567778888888888888


Q ss_pred             HHHHHHHHHhcCC---CC--CHHhHHHHHHHHHhc-CChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHHcCCHH
Q 006615          156 VLSTWNEYRQRAK---LL--STESYNIVMSVYAKT-GKNFEAVETFRQVIDEGAI-PN----SRTYTVMIEHLVNLGKLD  224 (638)
Q Consensus       156 A~~l~~~m~~~~~---~p--~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~-p~----~~ty~~li~~~~~~g~~~  224 (638)
                      |...|++..+...   .+  -..+|+.+...|... |++++|++.|++..+.... .+    ..+|+.+...+.+.|+++
T Consensus        96 A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~  175 (292)
T 1qqe_A           96 AVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYI  175 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHH
Confidence            8888877654310   00  134677777888885 8888888888877653110 01    346777778888888888


Q ss_pred             HHHHHHHhcccCCCccCH------hHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH----HH-HHHHHHH--HcCC
Q 006615          225 SALEVFSALPLMRIKRTS------KQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRA----MR-VALERMQ--EMGF  291 (638)
Q Consensus       225 ~A~~~~~~m~~~g~~p~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----~~-~ll~~~~--~~g~  291 (638)
                      +|.+.|++..+.......      ..|..+..++...|++++|...|++...........    .. .++..+.  ..++
T Consensus       176 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~  255 (292)
T 1qqe_A          176 EASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQ  255 (292)
T ss_dssp             HHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTT
T ss_pred             HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHH
Confidence            888888887654322111      146667777888888888888888776532211111    12 3344443  3456


Q ss_pred             hHHHHHHHHHhC
Q 006615          292 IQGANEFLREML  303 (638)
Q Consensus       292 ~~~a~~~~~~~~  303 (638)
                      +++|...|+.+.
T Consensus       256 ~~~A~~~~~~~~  267 (292)
T 1qqe_A          256 LSEHCKEFDNFM  267 (292)
T ss_dssp             HHHHHHHHTTSS
T ss_pred             HHHHHHHhccCC
Confidence            777777776654

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.75  E-value=2.7e-07  Score=76.44  Aligned_cols=129  Identities=16%  Similarity=0.214  Sum_probs=109.1

Q ss_pred             HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHH
Q 006615          173 ESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGF  252 (638)
Q Consensus       173 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~  252 (638)
                      .+|..+...+...|++++|..+|+++.+.+. .+..++..+...+...|++++|.+.|+++.+.+ +.+...|..+...+
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~   79 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAY   79 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHH
Confidence            3578888999999999999999999988642 367888889999999999999999999987654 34677888999999


Q ss_pred             HccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHhC
Q 006615          253 VGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREML  303 (638)
Q Consensus       253 ~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~~  303 (638)
                      ...|++++|.+.++++..........++.+...+...|++++|...++++.
T Consensus        80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~  130 (136)
T 2fo7_A           80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL  130 (136)
T ss_dssp             HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence            999999999999999987654333344577888999999999999998874

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.69  E-value=1.4e-06  Score=82.22  Aligned_cols=144  Identities=17%  Similarity=0.109  Sum_probs=70.8

Q ss_pred             HHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCCHHhHHHHHHHHHhcCChHHHHHHHHHHH
Q 006615          121 LKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAK-LLSTESYNIVMSVYAKTGKNFEAVETFRQVI  199 (638)
Q Consensus       121 a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~  199 (638)
                      +...+++..+.+ .++..++..+..++...|++++|++++.+....|- .-+...+-.++..+.+.|+.+.|.+.+++|.
T Consensus        85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~  163 (310)
T 3mv2_B           85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT  163 (310)
T ss_dssp             CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            344445444433 23333344555555566666666666655544331 1234455555556666666666666666665


Q ss_pred             HcCCCC-----CHHHHHHHHHHHHH--cC--CHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHH
Q 006615          200 DEGAIP-----NSRTYTVMIEHLVN--LG--KLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMR  269 (638)
Q Consensus       200 ~~g~~p-----~~~ty~~li~~~~~--~g--~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~  269 (638)
                      +.  .|     +..+...|..++..  .|  +..+|..+|+++.+.  .|+..+-..++.++.+.|++++|.+.++.+.
T Consensus       164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~  238 (310)
T 3mv2_B          164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL  238 (310)
T ss_dssp             HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            52  33     23444444444222  23  566666666665442  2332222333335555666666666665443

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.68  E-value=1.4e-06  Score=82.27  Aligned_cols=185  Identities=10%  Similarity=0.010  Sum_probs=135.4

Q ss_pred             HHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCchHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006615           85 ALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKF-LNVSVNFMNLMQWYSTSGDLELVLSTWNEY  163 (638)
Q Consensus        85 Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~-~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m  163 (638)
                      |+..|+.....+  .++...+..+..++...|++++|.+++.+.+..+. ..+...+..+++.+.+.|+.+.|.+.+++|
T Consensus        85 a~~~l~~l~~~~--~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~  162 (310)
T 3mv2_B           85 NIEELENLLKDK--QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY  162 (310)
T ss_dssp             CCHHHHHTTTTS--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            677777776543  45566667888889999999999999999876653 246667788999999999999999999999


Q ss_pred             HhcCCCC-----CHHhHHHHHHHH--HhcC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcc
Q 006615          164 RQRAKLL-----STESYNIVMSVY--AKTG--KNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP  234 (638)
Q Consensus       164 ~~~~~~p-----~~~~~~~li~~~--~~~g--~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~  234 (638)
                      .+..  |     +..+...|..++  ...|  +..+|..+|+++.+.  .|+..+-..++.++.+.|++++|++.++.+.
T Consensus       163 ~~~~--~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~  238 (310)
T 3mv2_B          163 TNAI--EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL  238 (310)
T ss_dssp             HHHS--CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HhcC--ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            8764  5     355566666663  3334  899999999999775  4665555666678999999999999998765


Q ss_pred             cC-----CC----ccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH
Q 006615          235 LM-----RI----KRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM  279 (638)
Q Consensus       235 ~~-----g~----~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~  279 (638)
                      +.     .-    .-|..+...+|......|+  +|.+++.++  ....|+..+
T Consensus       239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL--~~~~P~hp~  288 (310)
T 3mv2_B          239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQL--VKLDHEHAF  288 (310)
T ss_dssp             SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHH--HHTTCCCHH
T ss_pred             HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHH--HHhCCCChH
Confidence            42     00    2256666556656666676  677777654  556665544

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.66  E-value=6.2e-07  Score=96.97  Aligned_cols=152  Identities=11%  Similarity=-0.005  Sum_probs=80.7

Q ss_pred             HhcCChHHHHHHHHHHH--------hCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHh
Q 006615          113 AKSQRNHELKTLIGDIS--------SSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAK  184 (638)
Q Consensus       113 ~~~~~~~~a~~l~~~~~--------~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~  184 (638)
                      ...|++++|...+++..        +. .+.+...+..+...|.+.|++++|...|++..+.+ +.+...|..+..++.+
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~  479 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL  479 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence            44555566655555554        21 12333445555555556666666666666555543 2344555555555556


Q ss_pred             cCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHH
Q 006615          185 TGKNFEAVETFRQVIDEGAIP-NSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKS  263 (638)
Q Consensus       185 ~g~~~~A~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~  263 (638)
                      .|++++|.+.|++..+..  | +...|..+...|.+.|++++ .+.|++..+.. .-+...|..+..++.+.|++++|.+
T Consensus       480 ~g~~~~A~~~~~~al~l~--P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~  555 (681)
T 2pzi_A          480 TGDYDSATKHFTEVLDTF--PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVR  555 (681)
T ss_dssp             HTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHH
Confidence            666666666666555532  2 34455555555555666655 55555554422 1234455555555666666666666


Q ss_pred             HHHHHHh
Q 006615          264 LLNEMRD  270 (638)
Q Consensus       264 l~~~m~~  270 (638)
                      .|++..+
T Consensus       556 ~~~~al~  562 (681)
T 2pzi_A          556 TLDEVPP  562 (681)
T ss_dssp             HHHTSCT
T ss_pred             HHHhhcc
Confidence            6655543

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.64  E-value=2.1e-06  Score=80.86  Aligned_cols=178  Identities=10%  Similarity=-0.070  Sum_probs=134.9

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHH
Q 006615          405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLP--FSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLL  482 (638)
Q Consensus       405 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  482 (638)
                      +...+-.+...+.+.|++++|...|+++........  ...+..+..+|.+.|++++|...|+...+..+..  |....+
T Consensus        14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~--~~~~~a   91 (261)
T 3qky_A           14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQID--PRVPQA   91 (261)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--TTHHHH
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCC--chhHHH
Confidence            556677778888999999999999999987653311  5677788889999999999999999988764432  232357


Q ss_pred             HHHHHHHHHc--------cCChHHHHHHHHHHHhCCCCcch-hhH-----------------HHHHHHHHccCCHHHHHH
Q 006615          483 YSSLLRTLTK--------CKRDFDAINVLEEMIFSGIVPDV-QTF-----------------SGLMYHFALQGDEKIVQK  536 (638)
Q Consensus       483 ~~~li~~~~~--------~g~~~~A~~l~~~m~~~g~~p~~-~t~-----------------~~li~~~~~~g~~~~a~~  536 (638)
                      +..+..++.+        .|++++|++.|++..+.  .|+. ...                 ..+...|.+.|++++|..
T Consensus        92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  169 (261)
T 3qky_A           92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAV  169 (261)
T ss_dssp             HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence            7778888888        99999999999999875  3432 333                 455778899999999999


Q ss_pred             HHHHHHhCCCCCCHhhHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcc----------CcHHHHHHHHHHHHHccCCC
Q 006615          537 LFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWKE----------GRRKEAAAVEERCEKINDVP  606 (638)
Q Consensus       537 l~~~m~~~~~~p~~~~~~~li~~~~~~m~~~g~~p~~~~~~~li~~~~~~----------g~~~~A~~~~~~~~~~~~~~  606 (638)
                      .|+.+.+.  .|+..                   .....+..+..+|.+.          |++++|.+.++++.+..+..
T Consensus       170 ~~~~~l~~--~p~~~-------------------~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~  228 (261)
T 3qky_A          170 TYEAVFDA--YPDTP-------------------WADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDS  228 (261)
T ss_dssp             HHHHHHHH--CTTST-------------------THHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHH--CCCCc-------------------hHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCC
Confidence            99999874  24321                   1234555666666655          99999999999999987644


Q ss_pred             C
Q 006615          607 S  607 (638)
Q Consensus       607 ~  607 (638)
                      |
T Consensus       229 ~  229 (261)
T 3qky_A          229 P  229 (261)
T ss_dssp             T
T ss_pred             h
Confidence            4

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.60  E-value=9.6e-07  Score=84.44  Aligned_cols=164  Identities=10%  Similarity=-0.005  Sum_probs=107.8

Q ss_pred             CchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006615          135 NVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMI  214 (638)
Q Consensus       135 ~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li  214 (638)
                      .+...+..+...+.+.|++++|...|++..... +-+...+..+...+.+.|++++|...|++....  .|+........
T Consensus       115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~  191 (287)
T 3qou_A          115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVA  191 (287)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHH
T ss_pred             CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHH
Confidence            344555666677777788888888887777664 345667777777777778888888877777653  34443332222


Q ss_pred             -HHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHcCC
Q 006615          215 -EHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP--GRAMRVALERMQEMGF  291 (638)
Q Consensus       215 -~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~~~~ll~~~~~~g~  291 (638)
                       ..+.+.++.++|.+.+++..... +.+...+..+...+...|++++|...|.++.+.....  ......+...+...|+
T Consensus       192 ~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~  270 (287)
T 3qou_A          192 QIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT  270 (287)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred             HHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence             22556666677777777665532 2356677777777778888888888887777654433  2344567777777777


Q ss_pred             hHHHHHHHHHh
Q 006615          292 IQGANEFLREM  302 (638)
Q Consensus       292 ~~~a~~~~~~~  302 (638)
                      .++|...+++.
T Consensus       271 ~~~a~~~~r~a  281 (287)
T 3qou_A          271 GDALASXYRRQ  281 (287)
T ss_dssp             TCHHHHHHHHH
T ss_pred             CCcHHHHHHHH
Confidence            77777777654

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.60  E-value=1.4e-06  Score=84.31  Aligned_cols=95  Identities=11%  Similarity=0.033  Sum_probs=54.0

Q ss_pred             cCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 006615          150 SGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEV  229 (638)
Q Consensus       150 ~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~  229 (638)
                      .|++++|.+++++..+.. +..      +   +...+++++|...|.+.               ...|...|++++|.+.
T Consensus         4 ~~~~~eA~~~~~~a~k~~-~~~------~---~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~   58 (307)
T 2ifu_A            4 AQKISEAHEHIAKAEKYL-KTS------F---MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA   58 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHH-CCC------S---SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHc-ccc------c---cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence            456667777776665432 110      0   11146666666666654               3455666777777777


Q ss_pred             HHhcccC----CCcc-CHhHHHHHHHHHHccCCHHHHHHHHHHHH
Q 006615          230 FSALPLM----RIKR-TSKQYLILVEGFVGVERFDEAKSLLNEMR  269 (638)
Q Consensus       230 ~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~  269 (638)
                      |.+..+.    |-.+ -..+|+.+...|.+.|++++|+..|++..
T Consensus        59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al  103 (307)
T 2ifu_A           59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKAS  103 (307)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            6655431    1011 13456667777777777777777777654

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.56  E-value=1.9e-06  Score=81.11  Aligned_cols=180  Identities=9%  Similarity=0.012  Sum_probs=96.6

Q ss_pred             HHHHHHcCCChhHHHHHHHHHHcCCCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCchHhHHHHHHHHH
Q 006615           72 VTHALRSAPNADSALSIMEALKSNPNFSHN-QSTLHALATVLAKSQRNHELKTLIGDISSSKF--LNVSVNFMNLMQWYS  148 (638)
Q Consensus        72 ~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~--~~~~~~~~~ll~~~~  148 (638)
                      ....+.+.|++++|+..|+.+.+..+-.|. ...+..+..++...|++++|...|++..+...  +.....+..+..++.
T Consensus        21 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~  100 (261)
T 3qky_A           21 RAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYY  100 (261)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHH
Confidence            455666777777777777777654222211 34566666667777777777777777665321  112334555666666


Q ss_pred             h--------cCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 006615          149 T--------SGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL  220 (638)
Q Consensus       149 ~--------~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~  220 (638)
                      +        .|++++|...|++..... +.+...+..+...              ......    -...+..+...|.+.
T Consensus       101 ~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~--------------~~~~~~----~~~~~~~la~~~~~~  161 (261)
T 3qky_A          101 KLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKI--------------RELRAK----LARKQYEAARLYERR  161 (261)
T ss_dssp             HHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHH--------------HHHHHH----HHHHHHHHHHHHHHT
T ss_pred             HhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHH--------------HHHHHH----HHHHHHHHHHHHHHc
Confidence            6        677777777777766653 1122222111000              000000    000123445556666


Q ss_pred             CCHHHHHHHHHhcccCCCccC----HhHHHHHHHHHHcc----------CCHHHHHHHHHHHHhCC
Q 006615          221 GKLDSALEVFSALPLMRIKRT----SKQYLILVEGFVGV----------ERFDEAKSLLNEMRDDG  272 (638)
Q Consensus       221 g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~----------g~~~~A~~l~~~m~~~g  272 (638)
                      |++++|...|++..+.  .|+    ...+..+..+|...          |++++|...|+++.+..
T Consensus       162 g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~  225 (261)
T 3qky_A          162 ELYEAAAVTYEAVFDA--YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF  225 (261)
T ss_dssp             TCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred             cCHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence            6777776666666542  122    23455555556544          66677777777766543

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.55  E-value=7.5e-07  Score=96.35  Aligned_cols=173  Identities=9%  Similarity=-0.032  Sum_probs=142.3

Q ss_pred             HcCCChhHHHHHHHHHH--------cCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHH
Q 006615           77 RSAPNADSALSIMEALK--------SNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYS  148 (638)
Q Consensus        77 ~~~~~~~~Al~~~~~~~--------~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~  148 (638)
                      ...|++++|++.|+.+.        +..  +.+...+..+..++...|++++|...+++..+.. +.+...|..+..+|.
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~  478 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDF--SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAEL  478 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CC--TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhccccccccc--ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHH
Confidence            67899999999999987        332  3345678888899999999999999999988753 346677888999999


Q ss_pred             hcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 006615          149 TSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALE  228 (638)
Q Consensus       149 ~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~  228 (638)
                      +.|++++|...|++..+.+ +-+...|..+..++.+.|++++ .+.|++..+... -+...|..+..++.+.|++++|.+
T Consensus       479 ~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~  555 (681)
T 2pzi_A          479 LTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTND-GVISAAFGLARARSAEGDRVGAVR  555 (681)
T ss_dssp             HHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC-chHHHHHHHHHHHHHcCCHHHHHH
Confidence            9999999999999999875 4467889999999999999999 999999988532 267889999999999999999999


Q ss_pred             HHHhcccCCCccC-HhHHHHHHHHHHccCC
Q 006615          229 VFSALPLMRIKRT-SKQYLILVEGFVGVER  257 (638)
Q Consensus       229 ~~~~m~~~g~~p~-~~~~~~li~~~~~~g~  257 (638)
                      .|++..+.  .|+ ...|..+..++...++
T Consensus       556 ~~~~al~l--~P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          556 TLDEVPPT--SRHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HHHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred             HHHhhccc--CcccHHHHHHHHHHHHccCC
Confidence            99998864  454 5677778888877665

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.55  E-value=6.1e-06  Score=75.61  Aligned_cols=173  Identities=11%  Similarity=-0.026  Sum_probs=118.2

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC-HHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHH
Q 006615          407 YALEKMLTILARHGHVELVDRLIAKLRSDGMR-LP-FSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYS  484 (638)
Q Consensus       407 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~-~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~  484 (638)
                      ..+..+...+.+.|++++|...|+++...... |. ...+..+..+|.+.|++++|...|++..+..+.....  ..++.
T Consensus         5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~--~~a~~   82 (225)
T 2yhc_A            5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI--DYVMY   82 (225)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH--HHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcH--HHHHH
Confidence            34445566677788888888888887765432 11 3456667777888888888888888877654432221  12333


Q ss_pred             HHHHHHH------------------ccCChHHHHHHHHHHHhCCCCcchh-hH-----------------HHHHHHHHcc
Q 006615          485 SLLRTLT------------------KCKRDFDAINVLEEMIFSGIVPDVQ-TF-----------------SGLMYHFALQ  528 (638)
Q Consensus       485 ~li~~~~------------------~~g~~~~A~~l~~~m~~~g~~p~~~-t~-----------------~~li~~~~~~  528 (638)
                      .+...+.                  ..|+.++|.+.|+++.+.  .|+.. .+                 ..+...|.+.
T Consensus        83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~  160 (225)
T 2yhc_A           83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTER  160 (225)
T ss_dssp             HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            3333333                  367899999999999875  35432 22                 2345577889


Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHccC
Q 006615          529 GDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKIND  604 (638)
Q Consensus       529 g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~  604 (638)
                      |++++|...|+.+.+.  .|+..                   .....+..+..++.+.|++++|.+.++.+...++
T Consensus       161 ~~~~~A~~~~~~~l~~--~p~~~-------------------~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~  215 (225)
T 2yhc_A          161 GAWVAVVNRVEGMLRD--YPDTQ-------------------ATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS  215 (225)
T ss_dssp             TCHHHHHHHHHHHHHH--STTSH-------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred             CcHHHHHHHHHHHHHH--CcCCC-------------------ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence            9999999999999874  23311                   0124677899999999999999999999888654

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.54  E-value=8.8e-07  Score=77.72  Aligned_cols=155  Identities=11%  Similarity=0.001  Sum_probs=67.2

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHHc
Q 006615          142 NLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH-LVNL  220 (638)
Q Consensus       142 ~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~-~~~~  220 (638)
                      .+...+.+.|++++|...|++..+.+ +.+...+..+...+.+.|++++|...|++..+.  .|+...+..+... +...
T Consensus        11 ~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~   87 (176)
T 2r5s_A           11 KQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQQ   87 (176)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHhh
Confidence            33444445555555555555444332 223444555555555555555555555544432  1222221111111 1111


Q ss_pred             CCHHHHHHHHHhcccCCCcc-CHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHcCChHHHHH
Q 006615          221 GKLDSALEVFSALPLMRIKR-TSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR--AMRVALERMQEMGFIQGANE  297 (638)
Q Consensus       221 g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~~~~ll~~~~~~g~~~~a~~  297 (638)
                      +...+|.+.|++..+.  .| +...+..+...+...|++++|...|+++.+....+..  ....+...+...|+.++|..
T Consensus        88 ~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~  165 (176)
T 2r5s_A           88 AAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS  165 (176)
T ss_dssp             HTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred             cccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence            1222234444444332  22 3444555555555555555555555555544433211  23344455555555555555


Q ss_pred             HHHH
Q 006615          298 FLRE  301 (638)
Q Consensus       298 ~~~~  301 (638)
                      .+++
T Consensus       166 ~y~~  169 (176)
T 2r5s_A          166 KYRR  169 (176)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5544

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.54  E-value=4.1e-06  Score=75.69  Aligned_cols=130  Identities=11%  Similarity=0.096  Sum_probs=93.0

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHH
Q 006615          141 MNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIP-NSRTYTVMIEHLVN  219 (638)
Q Consensus       141 ~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~ty~~li~~~~~  219 (638)
                      ..+...|.+.|++++|...|++..+.+ +-+...|..+..++...|++++|.+.|++..+.  .| +..+|..+...|..
T Consensus        58 ~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~  134 (208)
T 3urz_A           58 TELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYL  134 (208)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHH
Confidence            347888889999999999999988875 446788888889999999999999999998885  34 57778777777765


Q ss_pred             cCC--HHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH
Q 006615          220 LGK--LDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR  277 (638)
Q Consensus       220 ~g~--~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~  277 (638)
                      .|+  .+.+...+.....  ..|....+..+..++...|++++|...|++..+.  .|+.
T Consensus       135 ~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~  190 (208)
T 3urz_A          135 TAEQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPST  190 (208)
T ss_dssp             HHHHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCH
T ss_pred             HhHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCH
Confidence            553  4455666665542  1223333444555666788999999999988764  4554

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.53  E-value=3.3e-06  Score=76.29  Aligned_cols=170  Identities=9%  Similarity=-0.026  Sum_probs=125.6

Q ss_pred             HHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHH----------------HHHHHHhcCChHHHHHHHHHHHhCCCCCc
Q 006615           73 THALRSAPNADSALSIMEALKSNPNFSHNQSTLHA----------------LATVLAKSQRNHELKTLIGDISSSKFLNV  136 (638)
Q Consensus        73 ~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~----------------li~~~~~~~~~~~a~~l~~~~~~~~~~~~  136 (638)
                      ...+...|++++|+..|+.+.+..  +-+...+..                +..++.+.|++++|...+++..+.. +.+
T Consensus        11 g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~   87 (208)
T 3urz_A           11 VSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-PNN   87 (208)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCC
Confidence            456678999999999999988643  113335666                8888899999999999999988754 456


Q ss_pred             hHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006615          137 SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGK--NFEAVETFRQVIDEGAIPNSRTYTVMI  214 (638)
Q Consensus       137 ~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~ty~~li  214 (638)
                      ...+..+...|...|++++|...|++..+.+ +.+..+|..+...|...|.  .+.+...+.....  ..|....+...-
T Consensus        88 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g  164 (208)
T 3urz_A           88 VDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYARYRDG  164 (208)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHHHHHH
Confidence            7788999999999999999999999999875 4568889999888876554  3455566655532  222333344455


Q ss_pred             HHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHH
Q 006615          215 EHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE  250 (638)
Q Consensus       215 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~  250 (638)
                      .++...|++++|...|++..+.  .|+......+.+
T Consensus       165 ~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~l~~  198 (208)
T 3urz_A          165 LSKLFTTRYEKARNSLQKVILR--FPSTEAQKTLDK  198 (208)
T ss_dssp             HHHHHHHTHHHHHHHHHHHTTT--SCCHHHHHHHHH
T ss_pred             HHHHHccCHHHHHHHHHHHHHh--CCCHHHHHHHHH
Confidence            5667789999999999998864  677665554443

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.50  E-value=8.3e-06  Score=74.71  Aligned_cols=56  Identities=11%  Similarity=0.061  Sum_probs=28.0

Q ss_pred             HHHHHHccCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHcCChHHHHHHHHHhC
Q 006615          248 LVEGFVGVERFDEAKSLLNEMRDDGKFPG---RAMRVALERMQEMGFIQGANEFLREML  303 (638)
Q Consensus       248 li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~~~~ll~~~~~~g~~~~a~~~~~~~~  303 (638)
                      +...|.+.|++++|...|+++.+......   ...+.+..++.+.|+.++|.+.++.+.
T Consensus       153 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~  211 (225)
T 2yhc_A          153 VAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIA  211 (225)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence            34455555666666666655554322111   122344555555666666665555543

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.50  E-value=7.9e-06  Score=74.04  Aligned_cols=178  Identities=11%  Similarity=-0.024  Sum_probs=125.7

Q ss_pred             hHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcC----CHHHHHH
Q 006615           83 DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSG----DLELVLS  158 (638)
Q Consensus        83 ~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g----~~~~A~~  158 (638)
                      .+|++.|+...+.+    +...+..+-..+...+++++|..+|++..+.|   +...+..|-..|.. +    +.++|..
T Consensus         3 ~eA~~~~~~aa~~g----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~   74 (212)
T 3rjv_A            3 TEPGSQYQQQAEAG----DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQ   74 (212)
T ss_dssp             -CTTHHHHHHHHTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHH
T ss_pred             chHHHHHHHHHHCC----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHH
Confidence            34667777776552    45567777777777888888888888877754   45556667777776 6    7888888


Q ss_pred             HHHHHHhcCCCCCHHhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHH----cCCHHHHHHH
Q 006615          159 TWNEYRQRAKLLSTESYNIVMSVYAK----TGKNFEAVETFRQVIDEGAI-PNSRTYTVMIEHLVN----LGKLDSALEV  229 (638)
Q Consensus       159 l~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~-p~~~ty~~li~~~~~----~g~~~~A~~~  229 (638)
                      .|++..+.|   +..++..|-..|..    .+++++|.++|++..+.|.. -+...+..|-..|..    .++.++|.+.
T Consensus        75 ~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~  151 (212)
T 3rjv_A           75 LAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEY  151 (212)
T ss_dssp             HHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHH
T ss_pred             HHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence            888887765   46677777777776    77888888888888775431 025677777777777    7788888888


Q ss_pred             HHhcccCCCccCHhHHHHHHHHHHcc-C-----CHHHHHHHHHHHHhCCC
Q 006615          230 FSALPLMRIKRTSKQYLILVEGFVGV-E-----RFDEAKSLLNEMRDDGK  273 (638)
Q Consensus       230 ~~~m~~~g~~p~~~~~~~li~~~~~~-g-----~~~~A~~l~~~m~~~g~  273 (638)
                      |++..+.  ..+...+..|-..|... |     ++++|...|++..+.|.
T Consensus       152 ~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~  199 (212)
T 3rjv_A          152 FKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF  199 (212)
T ss_dssp             HHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence            8887664  13444566666666543 2     78888888888776654

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.50  E-value=1.7e-06  Score=75.79  Aligned_cols=156  Identities=12%  Similarity=0.097  Sum_probs=69.2

Q ss_pred             HHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHH-HHhc
Q 006615           72 VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQW-YSTS  150 (638)
Q Consensus        72 ~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~-~~~~  150 (638)
                      ....+...|++++|+..|+.+.+..  +.+...+..+..++...|++++|...++...+..  |+...+..+... +...
T Consensus        12 ~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~   87 (176)
T 2r5s_A           12 QVSELLQQGEHAQALNVIQTLSDEL--QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQ   87 (176)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTSCHHH--HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhh
Confidence            3444555566666666665544321  1223345555555555566666665555554332  122211111111 1111


Q ss_pred             CCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Q 006615          151 GDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIP-NSRTYTVMIEHLVNLGKLDSALEV  229 (638)
Q Consensus       151 g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~~  229 (638)
                      +....|...|++..+.+ +.+...+..+..++.+.|++++|...|++..+....+ +...+..+...+...|+.++|...
T Consensus        88 ~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~  166 (176)
T 2r5s_A           88 AAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK  166 (176)
T ss_dssp             HTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred             cccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence            12223444454444432 2234445555555555555555555555554432211 133444444555555555555544


Q ss_pred             HHh
Q 006615          230 FSA  232 (638)
Q Consensus       230 ~~~  232 (638)
                      |++
T Consensus       167 y~~  169 (176)
T 2r5s_A          167 YRR  169 (176)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.49  E-value=2.9e-06  Score=89.98  Aligned_cols=153  Identities=8%  Similarity=-0.073  Sum_probs=89.3

Q ss_pred             CCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHH
Q 006615           79 APNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLS  158 (638)
Q Consensus        79 ~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~  158 (638)
                      .|++++|+..|+.+.+..  +.+...+..+...+...|++++|...+++..+.. +.+...+..+...|.+.|++++|.+
T Consensus         2 ~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~   78 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHR--PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAV   78 (568)
T ss_dssp             ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            356777777777766442  2234566667777777777777777777776643 3345566667777777777777777


Q ss_pred             HHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHhccc
Q 006615          159 TWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL---GKLDSALEVFSALPL  235 (638)
Q Consensus       159 l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~---g~~~~A~~~~~~m~~  235 (638)
                      .|++..+.+ +.+...|..+..+|.+.|++++|.+.|++..+... -+...+..+...+...   |+.++|.+.+++..+
T Consensus        79 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~  156 (568)
T 2vsy_A           79 LLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA  156 (568)
T ss_dssp             HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence            777776654 33466677777777777777777777777766421 2456666666777777   777777777776655


Q ss_pred             C
Q 006615          236 M  236 (638)
Q Consensus       236 ~  236 (638)
                      .
T Consensus       157 ~  157 (568)
T 2vsy_A          157 Q  157 (568)
T ss_dssp             H
T ss_pred             c
Confidence            3

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.48  E-value=2.8e-06  Score=81.20  Aligned_cols=165  Identities=12%  Similarity=0.036  Sum_probs=129.5

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHH-
Q 006615          101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVM-  179 (638)
Q Consensus       101 ~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li-  179 (638)
                      +...+..+...+...|++++|...+++..+.. +.+...+..+...+.+.|++++|...+++.....  |+........ 
T Consensus       116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~  192 (287)
T 3qou_A          116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQ  192 (287)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHH
T ss_pred             chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHH
Confidence            34467777888889999999999999988753 3456678889999999999999999999887654  5544433333 


Q ss_pred             HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCc-cCHhHHHHHHHHHHccCCH
Q 006615          180 SVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIK-RTSKQYLILVEGFVGVERF  258 (638)
Q Consensus       180 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~  258 (638)
                      ..+.+.++.++|.+.|++..+... .+...+..+...+...|++++|.+.|+++.+..-. .+...+..+...|...|+.
T Consensus       193 ~~l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~  271 (287)
T 3qou_A          193 IELLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG  271 (287)
T ss_dssp             HHHHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred             HHHHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence            336677888889999999888532 36788888999999999999999999998764211 2266889999999999999


Q ss_pred             HHHHHHHHHHH
Q 006615          259 DEAKSLLNEMR  269 (638)
Q Consensus       259 ~~A~~l~~~m~  269 (638)
                      ++|...|++..
T Consensus       272 ~~a~~~~r~al  282 (287)
T 3qou_A          272 DALASXYRRQL  282 (287)
T ss_dssp             CHHHHHHHHHH
T ss_pred             CcHHHHHHHHH
Confidence            99999888764

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.48  E-value=8e-06  Score=78.89  Aligned_cols=125  Identities=11%  Similarity=0.071  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC----C-CHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCc-chhHH
Q 006615          407 YALEKMLTILARHGHVELVDRLIAKLRSDGMR----L-PFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPIS-KFKLM  480 (638)
Q Consensus       407 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~----~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~  480 (638)
                      .++..+...|.. |++++|.+.|++.......    . ...++..+...|.+.|++++|...|++..+...... .+...
T Consensus       117 ~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  195 (307)
T 2ifu_A          117 MALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCY  195 (307)
T ss_dssp             HHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHH
Confidence            456667777777 8888888888876542111    0 135677778888889999999988888765432111 22223


Q ss_pred             HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcch------hhHHHHHHHHHccCCHHHHHH
Q 006615          481 LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDV------QTFSGLMYHFALQGDEKIVQK  536 (638)
Q Consensus       481 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~------~t~~~li~~~~~~g~~~~a~~  536 (638)
                      ..+..+...+...|++++|...|++.. .  .|+.      .....++.++ ..|+.+.+.+
T Consensus       196 ~~~~~~g~~~~~~g~~~~A~~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~  253 (307)
T 2ifu_A          196 KKCIAQVLVQLHRADYVAAQKCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLR  253 (307)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence            466777777888899999999998887 3  3432      2344555555 4567665555

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.47  E-value=3.7e-06  Score=89.16  Aligned_cols=156  Identities=10%  Similarity=-0.031  Sum_probs=104.4

Q ss_pred             cCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHH
Q 006615          115 SQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVET  194 (638)
Q Consensus       115 ~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~  194 (638)
                      .|++++|...+++..+.. +.+...+..+...|.+.|++++|.+.|++..+.+ +.+...|..+...|.+.|++++|.+.
T Consensus         2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~   79 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL   79 (568)
T ss_dssp             --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            366777888887776542 3345667778888888888888888888887764 44577788888888888888888888


Q ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHcc---CCHHHHHHHHHHHHhC
Q 006615          195 FRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGV---ERFDEAKSLLNEMRDD  271 (638)
Q Consensus       195 ~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~---g~~~~A~~l~~~m~~~  271 (638)
                      |++..+... -+...+..+...|.+.|++++|.+.|++..+.. ..+...+..+...+...   |++++|.+.+++..+.
T Consensus        80 ~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~  157 (568)
T 2vsy_A           80 LQQASDAAP-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ  157 (568)
T ss_dssp             HHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence            888877532 256778888888888888888888888876642 23566777788888888   8888888888888765


Q ss_pred             CCC
Q 006615          272 GKF  274 (638)
Q Consensus       272 g~~  274 (638)
                      +..
T Consensus       158 ~p~  160 (568)
T 2vsy_A          158 GVG  160 (568)
T ss_dssp             TCC
T ss_pred             CCc
Confidence            543

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.43  E-value=0.00015  Score=74.59  Aligned_cols=125  Identities=10%  Similarity=0.076  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcc-cCCHHHHHHHHHhchhccCCCcchhHHHHHHH
Q 006615          407 YALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGI-SKKADAALKAFHDDRTLCGPISKFKLMLLYSS  485 (638)
Q Consensus       407 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~  485 (638)
                      ..|...+....+.++.+.|..+|+.....  ..+...|......-.. .++.+.|..+|+...+..+.  .|   ..|..
T Consensus       287 ~lw~~y~~~~~r~~~~~~AR~i~~~A~~~--~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~--~~---~~~~~  359 (493)
T 2uy1_A          287 LLRINHLNYVLKKRGLELFRKLFIELGNE--GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD--ST---LLKEE  359 (493)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHHHTTS--CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT--CH---HHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHhhCC--CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC--CH---HHHHH
Confidence            45777777777788899999999998222  2344444332222222 33699999999998776432  23   34666


Q ss_pred             HHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006615          486 LLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQ  543 (638)
Q Consensus       486 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~  543 (638)
                      .++...+.|+.+.|..+|++..     -....|...+.-=...|+.+.+..+++++..
T Consensus       360 yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~  412 (493)
T 2uy1_A          360 FFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD  412 (493)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            7787888999999999999973     2566777777777778999999998887764

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.41  E-value=1.2e-06  Score=74.43  Aligned_cols=142  Identities=11%  Similarity=0.017  Sum_probs=95.4

Q ss_pred             HHHHhccCChhHHHHHHHHHhcCCCCcCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccC
Q 006615          377 CKVLRHFKSPETAWHFFCWVAYQPGYTHD-VYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISK  455 (638)
Q Consensus       377 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g  455 (638)
                      +.++...+++++|+..+......   .|+ ...+..+...|.+.|++++|.+.|++..+.... +..+|..+..+|.+.|
T Consensus         4 G~~~~~~~~~e~ai~~~~~a~~~---~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~   79 (150)
T 4ga2_A            4 GSMRRSKADVERYIASVQGSTPS---PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEE   79 (150)
T ss_dssp             ---CCCHHHHHHHHHHHHHHSCS---HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred             HHHHHHcChHHHHHHHHHHhccc---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC
Confidence            44555567788888888776422   222 334566777888888888888888888876543 6677888888888888


Q ss_pred             CHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHH-HHHHHhCCCCc-chhhHHHHHHHHHccC
Q 006615          456 KADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINV-LEEMIFSGIVP-DVQTFSGLMYHFALQG  529 (638)
Q Consensus       456 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l-~~~m~~~g~~p-~~~t~~~li~~~~~~g  529 (638)
                      ++++|...|+...+.     .|+...+|..+...|.+.|+.++|.+. +++..+.  .| +...|......+...|
T Consensus        80 ~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--~P~~~~~~~l~~~ll~~~G  148 (150)
T 4ga2_A           80 NTDKAVECYRRSVEL-----NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--FPGSPAVYKLKEQLLDCEG  148 (150)
T ss_dssp             CHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--STTCHHHHHHHHHHHHTCC
T ss_pred             chHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhC
Confidence            888888888887765     444456777888888888887766554 4666653  34 3445555555555554

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.41  E-value=2.8e-05  Score=70.34  Aligned_cols=177  Identities=11%  Similarity=-0.045  Sum_probs=135.4

Q ss_pred             HHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccC----CHHHHHHH
Q 006615          388 TAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISK----KADAALKA  463 (638)
Q Consensus       388 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~  463 (638)
                      +|.+.|......    -+...+..+-..|...+++++|.+.|++..+.|   +...+..+-..|.. +    +.++|..+
T Consensus         4 eA~~~~~~aa~~----g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~   75 (212)
T 3rjv_A            4 EPGSQYQQQAEA----GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL   75 (212)
T ss_dssp             CTTHHHHHHHHT----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred             hHHHHHHHHHHC----CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence            455666666543    277888888889999999999999999999887   67778888888888 6    89999999


Q ss_pred             HHhchhccCCCcchhHHHHHHHHHHHHHc----cCChHHHHHHHHHHHhCCCC-cchhhHHHHHHHHHc----cCCHHHH
Q 006615          464 FHDDRTLCGPISKFKLMLLYSSLLRTLTK----CKRDFDAINVLEEMIFSGIV-PDVQTFSGLMYHFAL----QGDEKIV  534 (638)
Q Consensus       464 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~-p~~~t~~~li~~~~~----~g~~~~a  534 (638)
                      |+...+.       +.+.++..|...|..    .++.++|.+.|++..+.|.. .+...+..|-..|..    .+++++|
T Consensus        76 ~~~A~~~-------g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A  148 (212)
T 3rjv_A           76 AEKAVEA-------GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKA  148 (212)
T ss_dssp             HHHHHHT-------TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHH
T ss_pred             HHHHHHC-------CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHH
Confidence            9997542       224678888888887    88999999999999987632 126777888888887    7899999


Q ss_pred             HHHHHHHHhCCCCCCHhhHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcc------CcHHHHHHHHHHHHHccC
Q 006615          535 QKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWKE------GRRKEAAAVEERCEKIND  604 (638)
Q Consensus       535 ~~l~~~m~~~~~~p~~~~~~~li~~~~~~m~~~g~~p~~~~~~~li~~~~~~------g~~~~A~~~~~~~~~~~~  604 (638)
                      .+.|++..+.+  .                       +...+..|...|.+.      .++++|.+.+++..+.|.
T Consensus       149 ~~~~~~A~~~~--~-----------------------~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~  199 (212)
T 3rjv_A          149 SEYFKGSSSLS--R-----------------------TGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF  199 (212)
T ss_dssp             HHHHHHHHHTS--C-----------------------TTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHcC--C-----------------------CHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence            99999998751  1                       222344455555432      278888888888887764

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.41  E-value=1.5e-06  Score=73.79  Aligned_cols=111  Identities=7%  Similarity=0.023  Sum_probs=50.0

Q ss_pred             cCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHH
Q 006615           78 SAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVL  157 (638)
Q Consensus        78 ~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~  157 (638)
                      ..|++++|+..++.....+  +-+...+..+...+...|++++|...|++..+.. +.+...|..+..+|.+.|++++|.
T Consensus         9 ~~~~~e~ai~~~~~a~~~~--p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~   85 (150)
T 4ga2_A            9 SKADVERYIASVQGSTPSP--RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAV   85 (150)
T ss_dssp             CHHHHHHHHHHHHHHSCSH--HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HcChHHHHHHHHHHhcccC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHH
Confidence            3344555555555444321  0111223334444455555555555555544432 223344444555555555555555


Q ss_pred             HHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHH
Q 006615          158 STWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAV  192 (638)
Q Consensus       158 ~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~  192 (638)
                      ..|++..+.+ +-+..+|..+...|.+.|++++|.
T Consensus        86 ~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa  119 (150)
T 4ga2_A           86 ECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRA  119 (150)
T ss_dssp             HHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHH
T ss_pred             HHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHH
Confidence            5555544433 223444444555555555544433

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.40  E-value=5.2e-05  Score=72.55  Aligned_cols=176  Identities=6%  Similarity=-0.067  Sum_probs=128.5

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcch-hHH
Q 006615          407 YALEKMLTILARHGHVELVDRLIAKLRSDGMRLPF-----STIRLIIDFYGISKKADAALKAFHDDRTLCGPISKF-KLM  480 (638)
Q Consensus       407 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~  480 (638)
                      ..+...+..+...|++++|.+.+.+..+.......     ..+..+...+...|++++|...++...........+ ...
T Consensus        76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  155 (293)
T 2qfc_A           76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL  155 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence            34566788889999999999999988765433211     223445566788999999999999876543222222 224


Q ss_pred             HHHHHHHHHHHccCChHHHHHHHHHHHh---C-CCCc--chhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHH
Q 006615          481 LLYSSLLRTLTKCKRDFDAINVLEEMIF---S-GIVP--DVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFK  554 (638)
Q Consensus       481 ~~~~~li~~~~~~g~~~~A~~l~~~m~~---~-g~~p--~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~  554 (638)
                      .+|+.+...|...|++++|...|++..+   . +-.+  ...+|+.+...|...|++++|.+.+++..+..-        
T Consensus       156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~--------  227 (293)
T 2qfc_A          156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISC--------  227 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHH--------
Confidence            5899999999999999999999999873   1 1112  125888999999999999999999998875320        


Q ss_pred             HHHHHHHHHhhhCCCCC-CHHHHHHHHHHHhccCcHHHH-HHHHHHHHH
Q 006615          555 VLIQAYCKYLSNSNLMP-DAATKELLKKSLWKEGRRKEA-AAVEERCEK  601 (638)
Q Consensus       555 ~li~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A-~~~~~~~~~  601 (638)
                                 +.+... -..+|..+..+|.+.|++++| ...+++..+
T Consensus       228 -----------~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~  265 (293)
T 2qfc_A          228 -----------RINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             -----------HTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             -----------hcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence                       011111 255778899999999999999 777877654

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.39  E-value=9.3e-05  Score=70.77  Aligned_cols=221  Identities=8%  Similarity=-0.026  Sum_probs=149.9

Q ss_pred             CCHHHHHHhhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHH---HHHHHHHHHHhcCChHHHHHHHHHH
Q 006615          356 WSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVY---ALEKMLTILARHGHVELVDRLIAKL  432 (638)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~---~~~~li~~~~~~g~~~~a~~l~~~m  432 (638)
                      +.+..++.++.+...++...+.......+-.-.  .++..    .. ..+..   .+...+..+...|++++|..++++.
T Consensus        29 ~s~~~~s~~e~g~~~~~~~~l~~i~~~l~~~~~--~~~~~----~~-~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~  101 (293)
T 3u3w_A           29 CHQSEVSRIESGAVYPSMDILQGIAAKLQIPII--HFYEV----LI-YSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNE  101 (293)
T ss_dssp             SCHHHHHHHHTTSCCCCHHHHHHHHHHHTCCTH--HHHHT----TT-SSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHCCCCCCCHHHHHHHHHHhCcCHH--HHhCC----CC-CCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            566666666666655555555444444332211  11211    11 11222   3344577889999999999999998


Q ss_pred             HHcCC-CCCH----HHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcch-hHHHHHHHHHHHHHccCChHHHHHHHHHH
Q 006615          433 RSDGM-RLPF----STIRLIIDFYGISKKADAALKAFHDDRTLCGPISKF-KLMLLYSSLLRTLTKCKRDFDAINVLEEM  506 (638)
Q Consensus       433 ~~~g~-~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m  506 (638)
                      ..... .|+.    ..+..+...+...+++++|...|+...........+ ....+|+.+...|...|++++|.+.|+++
T Consensus       102 l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a  181 (293)
T 3u3w_A          102 LKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQI  181 (293)
T ss_dssp             HTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            86432 2222    133456777888899999999999987643222221 22357999999999999999999999998


Q ss_pred             Hh----C-CCCcc-hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHHhhhCCCCCC-HHHHHHH
Q 006615          507 IF----S-GIVPD-VQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPD-AATKELL  579 (638)
Q Consensus       507 ~~----~-g~~p~-~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~m~~~g~~p~-~~~~~~l  579 (638)
                      .+    . +..+. ..+|..+...|.+.|++++|.+.+++..+..                   .+.+..+. ..+|..+
T Consensus       182 l~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~-------------------~~~~~~~~~~~~~~~l  242 (293)
T 3u3w_A          182 LKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS-------------------CRINSMALIGQLYYQR  242 (293)
T ss_dssp             HHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------------------HHTTBCTTHHHHHHHH
T ss_pred             HHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-------------------HHcCcHHHHHHHHHHH
Confidence            74    1 22333 3478899999999999999999999877531                   11122233 5678889


Q ss_pred             HHHHhccC-cHHHHHHHHHHHHHc
Q 006615          580 KKSLWKEG-RRKEAAAVEERCEKI  602 (638)
Q Consensus       580 i~~~~~~g-~~~~A~~~~~~~~~~  602 (638)
                      ..++.+.| ++++|.+.+++..+.
T Consensus       243 g~~~~~~g~~~~~A~~~~~~Al~i  266 (293)
T 3u3w_A          243 GECLRKLEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCcHHHHHHHHHHHHHH
Confidence            99999999 569999999988764

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.38  E-value=0.00038  Score=66.22  Aligned_cols=149  Identities=6%  Similarity=-0.017  Sum_probs=74.4

Q ss_pred             HHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCCHHhHHHHHHHH----Hhc---CChHHHHHHHHHHHHcCCCCCHHHH
Q 006615          140 FMNLMQWYSTSG--DLELVLSTWNEYRQRAKLLSTESYNIVMSVY----AKT---GKNFEAVETFRQVIDEGAIPNSRTY  210 (638)
Q Consensus       140 ~~~ll~~~~~~g--~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~----~~~---g~~~~A~~~~~~m~~~g~~p~~~ty  210 (638)
                      |+.--..+...|  ++++++.+++.+...+ +-+..+|+.--..+    ...   +++++++++++.+.+...+ |-.+|
T Consensus        70 Wn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pk-ny~aW  147 (306)
T 3dra_A           70 WIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPK-NHHVW  147 (306)
T ss_dssp             HHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTT-CHHHH
T ss_pred             HHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCC-CHHHH
Confidence            343334444444  5555555555555543 22334444433333    333   4555555555555554222 44455


Q ss_pred             HHHHHHHHHcCCHH--HHHHHHHhcccCCCccCHhHHHHHHHHHHccCC------HHHHHHHHHHHHhCCCCCCHHHHHH
Q 006615          211 TVMIEHLVNLGKLD--SALEVFSALPLMRIKRTSKQYLILVEGFVGVER------FDEAKSLLNEMRDDGKFPGRAMRVA  282 (638)
Q Consensus       211 ~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~------~~~A~~l~~~m~~~g~~p~~~~~~l  282 (638)
                      +--.-...+.|.++  ++.+.++++.+.. ..|...|+--...+.+.+.      ++++++.++++....+.-...++..
T Consensus       148 ~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~  226 (306)
T 3dra_A          148 SYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYL  226 (306)
T ss_dssp             HHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred             HHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHH
Confidence            44444444455555  5555555555433 2345555554444444444      6777777777776655544455444


Q ss_pred             HHHHHHcCC
Q 006615          283 LERMQEMGF  291 (638)
Q Consensus       283 l~~~~~~g~  291 (638)
                      -..+.+.|+
T Consensus       227 ~~ll~~~~~  235 (306)
T 3dra_A          227 LGIHERFDR  235 (306)
T ss_dssp             HHHHHHTTC
T ss_pred             HHHHHhcCC
Confidence            444444444

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.36  E-value=2.1e-05  Score=71.06  Aligned_cols=129  Identities=12%  Similarity=0.033  Sum_probs=86.2

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 006615          140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVN  219 (638)
Q Consensus       140 ~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~  219 (638)
                      +..+...+...|++++|...|++..    .|+..+|..+...|.+.|++++|.+.|++..+.. +.+...|..+...|.+
T Consensus         9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~   83 (213)
T 1hh8_A            9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ   83 (213)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence            3445556666777777777776552    4456677777777777777777777777766642 2255666667777777


Q ss_pred             cCCHHHHHHHHHhcccCC--------------Ccc-CHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 006615          220 LGKLDSALEVFSALPLMR--------------IKR-TSKQYLILVEGFVGVERFDEAKSLLNEMRDDGK  273 (638)
Q Consensus       220 ~g~~~~A~~~~~~m~~~g--------------~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~  273 (638)
                      .|++++|.+.|++..+..              ..| +...|..+..+|.+.|++++|.+.|++..+...
T Consensus        84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p  152 (213)
T 1hh8_A           84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS  152 (213)
T ss_dssp             TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred             cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence            777777777776665421              112 235677788888888888888888888876543

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.36  E-value=0.00011  Score=70.06  Aligned_cols=225  Identities=9%  Similarity=-0.032  Sum_probs=163.4

Q ss_pred             HHHHHcCCC-hhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcC--ChHHHHHHHHHHHhCCCCCchHhHHHHHHHH--
Q 006615           73 THALRSAPN-ADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQ--RNHELKTLIGDISSSKFLNVSVNFMNLMQWY--  147 (638)
Q Consensus        73 ~~~l~~~~~-~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~--  147 (638)
                      +.++.+.|. .++|+.+++.+....  +-....|+.--.++...+  +++++..+++.+.... +.+..+|+.--..+  
T Consensus        39 ~~a~~~~~e~s~~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~  115 (306)
T 3dra_A           39 LLALMKAEEYSERALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQ  115 (306)
T ss_dssp             HHHHHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHH
Confidence            444455555 468999999988653  223345777777777778  9999999999988754 33444566544444  


Q ss_pred             --Hhc---CCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 006615          148 --STS---GDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNF--EAVETFRQVIDEGAIPNSRTYTVMIEHLVNL  220 (638)
Q Consensus       148 --~~~---g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~  220 (638)
                        ...   +++++++.+++.+.+.+ +-|..+|+.-.-.+.+.|.++  ++++.++++.+.... |-..|+--.....+.
T Consensus       116 ~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l  193 (306)
T 3dra_A          116 IMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSK  193 (306)
T ss_dssp             HHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSS
T ss_pred             HHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhc
Confidence              445   78999999999999876 557888988888888888888  999999999987544 777887666666666


Q ss_pred             CC------HHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHH-HHHHHHHHHhCC---CCCCHHHHHHHHHHHHcC
Q 006615          221 GK------LDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDE-AKSLLNEMRDDG---KFPGRAMRVALERMQEMG  290 (638)
Q Consensus       221 g~------~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-A~~l~~~m~~~g---~~p~~~~~~ll~~~~~~g  290 (638)
                      |.      ++++.+.++++.... .-|...|+-+-..+.+.|+..+ +..+..+....+   +........+...+.+.|
T Consensus       194 ~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~  272 (306)
T 3dra_A          194 KHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQK  272 (306)
T ss_dssp             GGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTT
T ss_pred             cccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccC
Confidence            65      888888888877654 3478889888888888887544 555666665433   222223346667888999


Q ss_pred             ChHHHHHHHHHhC
Q 006615          291 FIQGANEFLREML  303 (638)
Q Consensus       291 ~~~~a~~~~~~~~  303 (638)
                      +.++|.+.++.+.
T Consensus       273 ~~~~A~~~~~~l~  285 (306)
T 3dra_A          273 KYNESRTVYDLLK  285 (306)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
Confidence            9999999999875

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.30  E-value=6.9e-06  Score=73.60  Aligned_cols=167  Identities=12%  Similarity=-0.083  Sum_probs=106.5

Q ss_pred             HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCC-cchhHHHHHHHHHHHHHccCC
Q 006615          417 ARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPI-SKFKLMLLYSSLLRTLTKCKR  495 (638)
Q Consensus       417 ~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~  495 (638)
                      ...|++++|.++++.+.. ........+..+...|...|++++|...+++..+..... ..+....++..+...+...|+
T Consensus         3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~   81 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN   81 (203)
T ss_dssp             ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence            346677777774444432 222244566677777777778777777777765432211 234445678888888888999


Q ss_pred             hHHHHHHHHHHHhC----CCCc--chhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCC-CCHhhHHHHHHHHHHHhhhCC
Q 006615          496 DFDAINVLEEMIFS----GIVP--DVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVE-PDAYMFKVLIQAYCKYLSNSN  568 (638)
Q Consensus       496 ~~~A~~l~~~m~~~----g~~p--~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~-p~~~~~~~li~~~~~~m~~~g  568 (638)
                      +++|.+.+++..+.    +-.|  ....+..+...+...|++++|.+.+++..+..-. .+.                  
T Consensus        82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~------------------  143 (203)
T 3gw4_A           82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQ------------------  143 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH------------------
T ss_pred             HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccch------------------
Confidence            99998888876552    2122  2345777778888889999999988877642100 010                  


Q ss_pred             CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcc
Q 006615          569 LMPDAATKELLKKSLWKEGRRKEAAAVEERCEKIN  603 (638)
Q Consensus       569 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~  603 (638)
                       ..-..++..+...+...|++++|.+.+++..+..
T Consensus       144 -~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  177 (203)
T 3gw4_A          144 -VAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIF  177 (203)
T ss_dssp             -HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence             0112345777888888899999988888877653

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.30  E-value=2.2e-05  Score=67.56  Aligned_cols=127  Identities=13%  Similarity=0.083  Sum_probs=76.9

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006615          139 NFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLV  218 (638)
Q Consensus       139 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~  218 (638)
                      .+..+...+...|+++.|...|++..... +.+..+|..+...+...|++++|.+.|++..+.. +.+..++..+...+.
T Consensus        15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~   92 (166)
T 1a17_A           15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM   92 (166)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence            35556666667777777777777766653 3356666667777777777777777777766642 124556666666666


Q ss_pred             HcCCHHHHHHHHHhcccCCCccCHhHHHH--HHHHHHccCCHHHHHHHHHHH
Q 006615          219 NLGKLDSALEVFSALPLMRIKRTSKQYLI--LVEGFVGVERFDEAKSLLNEM  268 (638)
Q Consensus       219 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~--li~~~~~~g~~~~A~~l~~~m  268 (638)
                      +.|++++|.+.|++..+.. +.+...+..  +...+.+.|++++|...+.+.
T Consensus        93 ~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  143 (166)
T 1a17_A           93 ALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK  143 (166)
T ss_dssp             HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence            7777777777776665432 113333322  223355566666666666554

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.30  E-value=5.7e-05  Score=68.16  Aligned_cols=127  Identities=11%  Similarity=-0.006  Sum_probs=94.6

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHh
Q 006615          105 LHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAK  184 (638)
Q Consensus       105 ~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~  184 (638)
                      +..+...+...|++++|...+++..    .|+...+..+...|.+.|++++|...|++....+ +.+...|..+..+|.+
T Consensus         9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~   83 (213)
T 1hh8_A            9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ   83 (213)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence            4445556667788888888877663    3566777788888888888888888888877764 4457778888888888


Q ss_pred             cCChHHHHHHHHHHHHcCCC--------------C-CHHHHHHHHHHHHHcCCHHHHHHHHHhcccC
Q 006615          185 TGKNFEAVETFRQVIDEGAI--------------P-NSRTYTVMIEHLVNLGKLDSALEVFSALPLM  236 (638)
Q Consensus       185 ~g~~~~A~~~~~~m~~~g~~--------------p-~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~  236 (638)
                      .|++++|.+.|++..+....              | ....+..+...|.+.|++++|.+.|++..+.
T Consensus        84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  150 (213)
T 1hh8_A           84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM  150 (213)
T ss_dssp             TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence            88888888888888774211              1 1267777888888889999998888887764

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.29  E-value=2.1e-05  Score=63.65  Aligned_cols=94  Identities=18%  Similarity=0.270  Sum_probs=45.1

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006615          139 NFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLV  218 (638)
Q Consensus       139 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~  218 (638)
                      .+..+...+.+.|++++|...|+++.... +.+..++..+...+.+.|++++|...|+++.+.. +.+..++..+...|.
T Consensus        11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~   88 (125)
T 1na0_A           11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYY   88 (125)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence            34444455555555555555555554432 2234445555555555555555555555554432 113444444444455


Q ss_pred             HcCCHHHHHHHHHhcc
Q 006615          219 NLGKLDSALEVFSALP  234 (638)
Q Consensus       219 ~~g~~~~A~~~~~~m~  234 (638)
                      ..|++++|.+.|+++.
T Consensus        89 ~~~~~~~A~~~~~~~~  104 (125)
T 1na0_A           89 KQGDYDEAIEYYQKAL  104 (125)
T ss_dssp             HTTCHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHH
Confidence            5555555555554443

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.29  E-value=1.6e-05  Score=76.09  Aligned_cols=169  Identities=11%  Similarity=0.052  Sum_probs=111.7

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCch----HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CC----
Q 006615          102 QSTLHALATVLAKSQRNHELKTLIGDISSSKF-LNVS----VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKL-LS----  171 (638)
Q Consensus       102 ~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~-~~~~----~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~-p~----  171 (638)
                      ...+...+..+...|++++|..+++...+... .++.    ..+..+...+...|++++|...|++....... ++    
T Consensus        75 ~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~  154 (293)
T 3u3w_A           75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN  154 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHH
Confidence            44555556666677777777777777665321 2221    12334666666777888888888887763221 22    


Q ss_pred             HHhHHHHHHHHHhcCChHHHHHHHHHHHHc-----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhccc----CCCccC
Q 006615          172 TESYNIVMSVYAKTGKNFEAVETFRQVIDE-----GAIPN-SRTYTVMIEHLVNLGKLDSALEVFSALPL----MRIKRT  241 (638)
Q Consensus       172 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~p~-~~ty~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~  241 (638)
                      ..+|+.+...|...|++++|.+.|++..+.     +..+. ..+|..+...|.+.|++++|.+.+++..+    .+..+.
T Consensus       155 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~  234 (293)
T 3u3w_A          155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL  234 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHH
Confidence            236788888888888888888888887741     12222 34677788888888888888888877653    221222


Q ss_pred             -HhHHHHHHHHHHccC-CHHHHHHHHHHHHh
Q 006615          242 -SKQYLILVEGFVGVE-RFDEAKSLLNEMRD  270 (638)
Q Consensus       242 -~~~~~~li~~~~~~g-~~~~A~~l~~~m~~  270 (638)
                       ..+|..+..+|.+.| ++++|.+.|++...
T Consensus       235 ~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~  265 (293)
T 3u3w_A          235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence             567888888888888 46889888888743

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.29  E-value=1.2e-05  Score=65.67  Aligned_cols=104  Identities=8%  Similarity=-0.137  Sum_probs=82.9

Q ss_pred             chhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHH
Q 006615          476 KFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKV  555 (638)
Q Consensus       476 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~  555 (638)
                      +|+....|......|.+.|++++|++.|++.++.. +.+...|..+..+|.+.|++++|++.+++.++.+  |+      
T Consensus         9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~------   79 (126)
T 4gco_A            9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD--SK------   79 (126)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT------
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh--hh------
Confidence            56666788888888888999999999998887753 2356778888888888999999999888887642  22      


Q ss_pred             HHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHccC
Q 006615          556 LIQAYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKIND  604 (638)
Q Consensus       556 li~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~  604 (638)
                                      +...|..+..++...|++++|.+.+++..+.++
T Consensus        80 ----------------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P  112 (126)
T 4gco_A           80 ----------------FIKGYIRKAACLVAMREWSKAQRAYEDALQVDP  112 (126)
T ss_dssp             ----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             ----------------hhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCc
Confidence                            466778888888888999999999998888765

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.24  E-value=2.6e-05  Score=63.06  Aligned_cols=100  Identities=16%  Similarity=0.245  Sum_probs=86.6

Q ss_pred             HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHH
Q 006615          172 TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEG  251 (638)
Q Consensus       172 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~  251 (638)
                      ..+|..+...+.+.|++++|.+.|+++.+.. +.+..++..+...+.+.|++++|...|+++.+.. ..+..++..+...
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~   86 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA   86 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence            5678889999999999999999999998863 2367888999999999999999999999987643 3467788999999


Q ss_pred             HHccCCHHHHHHHHHHHHhCCC
Q 006615          252 FVGVERFDEAKSLLNEMRDDGK  273 (638)
Q Consensus       252 ~~~~g~~~~A~~l~~~m~~~g~  273 (638)
                      +...|++++|...|+++.+...
T Consensus        87 ~~~~~~~~~A~~~~~~~~~~~~  108 (125)
T 1na0_A           87 YYKQGDYDEAIEYYQKALELDP  108 (125)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHhcCHHHHHHHHHHHHHhCC
Confidence            9999999999999999977543

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.22  E-value=1.4e-05  Score=71.63  Aligned_cols=155  Identities=12%  Similarity=0.010  Sum_probs=90.5

Q ss_pred             hcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhc----CC-CCCHHhHHHHHHHHHhcCCh
Q 006615          114 KSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQR----AK-LLSTESYNIVMSVYAKTGKN  188 (638)
Q Consensus       114 ~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~----~~-~p~~~~~~~li~~~~~~g~~  188 (638)
                      ..|++++|.++++.+... .......+..+...+...|++++|...+++....    +. .....+++.+...+...|++
T Consensus         4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~   82 (203)
T 3gw4_A            4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW   82 (203)
T ss_dssp             ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence            456666666644433321 1234455666667777777777777777665541    11 11244566666777777777


Q ss_pred             HHHHHHHHHHHHc----CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHhcccC----CCc-cCHhHHHHHHHHHHccCC
Q 006615          189 FEAVETFRQVIDE----GAIP--NSRTYTVMIEHLVNLGKLDSALEVFSALPLM----RIK-RTSKQYLILVEGFVGVER  257 (638)
Q Consensus       189 ~~A~~~~~~m~~~----g~~p--~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-p~~~~~~~li~~~~~~g~  257 (638)
                      ++|.+.+++..+.    +-.|  ...++..+...+...|++++|.+.+++....    +-. .-..++..+...+...|+
T Consensus        83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~  162 (203)
T 3gw4_A           83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN  162 (203)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence            7777777766542    1111  1344566666777777777777777765431    111 112345667777888888


Q ss_pred             HHHHHHHHHHHH
Q 006615          258 FDEAKSLLNEMR  269 (638)
Q Consensus       258 ~~~A~~l~~~m~  269 (638)
                      +++|.+.+++..
T Consensus       163 ~~~A~~~~~~al  174 (203)
T 3gw4_A          163 LLEAQQHWLRAR  174 (203)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            888888877763

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.22  E-value=1.3e-05  Score=67.76  Aligned_cols=104  Identities=11%  Similarity=-0.025  Sum_probs=70.0

Q ss_pred             chhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHH
Q 006615          476 KFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKV  555 (638)
Q Consensus       476 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~  555 (638)
                      .|+....+..+...+.+.|++++|.+.|++..+.. +-+...|..+-.+|...|++++|.+.|++..+.  .|+      
T Consensus        32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l--~P~------  102 (151)
T 3gyz_A           32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL--GKN------  102 (151)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SSS------
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CCC------
Confidence            45555666777777777777777777777776642 124556667777777777777777777777663  222      


Q ss_pred             HHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHccC
Q 006615          556 LIQAYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKIND  604 (638)
Q Consensus       556 li~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~  604 (638)
                                      +...|..+..+|.+.|++++|.+.|++..+..+
T Consensus       103 ----------------~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~  135 (151)
T 3gyz_A          103 ----------------DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSN  135 (151)
T ss_dssp             ----------------CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             ----------------CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence                            345566677777777777777777777777654

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.20  E-value=8.6e-05  Score=71.02  Aligned_cols=160  Identities=11%  Similarity=0.075  Sum_probs=68.8

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhCCCCCc-h----HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---CCC--HHhHHH
Q 006615          108 LATVLAKSQRNHELKTLIGDISSSKFLNV-S----VNFMNLMQWYSTSGDLELVLSTWNEYRQRAK---LLS--TESYNI  177 (638)
Q Consensus       108 li~~~~~~~~~~~a~~l~~~~~~~~~~~~-~----~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~---~p~--~~~~~~  177 (638)
                      .+..+...|++++|...+....+...... .    ..+..+...+...|++++|...+++......   .+.  ..+|+.
T Consensus        81 ~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  160 (293)
T 2qfc_A           81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA  160 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence            34444455555555555554443221110 0    1122233444445555555555555443210   011  234555


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHc-CCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHhcccCC----Ccc-CHhHHH
Q 006615          178 VMSVYAKTGKNFEAVETFRQVIDE-GAIPN-----SRTYTVMIEHLVNLGKLDSALEVFSALPLMR----IKR-TSKQYL  246 (638)
Q Consensus       178 li~~~~~~g~~~~A~~~~~~m~~~-g~~p~-----~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p-~~~~~~  246 (638)
                      +...|...|++++|.+.|++..+. ...|+     ..+|..+...|.+.|++++|.+.+++..+..    ... -..+|.
T Consensus       161 lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~  240 (293)
T 2qfc_A          161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY  240 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            555555555555555555554421 00111     1344455555555555555555555433210    000 033445


Q ss_pred             HHHHHHHccCCHHHH-HHHHHH
Q 006615          247 ILVEGFVGVERFDEA-KSLLNE  267 (638)
Q Consensus       247 ~li~~~~~~g~~~~A-~~l~~~  267 (638)
                      .+...|.+.|++++| ...+++
T Consensus       241 ~lg~~y~~~g~~~~Ai~~~~~~  262 (293)
T 2qfc_A          241 QRGECLRKLEYEEAEIEDAYKK  262 (293)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHcCCcHHHHHHHHHH
Confidence            555555555555555 444443

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.19  E-value=3.7e-05  Score=62.80  Aligned_cols=116  Identities=13%  Similarity=0.035  Sum_probs=59.3

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006615          139 NFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLV  218 (638)
Q Consensus       139 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~  218 (638)
                      .+..+...+...|++++|...|++..... +.+...|..+...+...|++++|.+.+++..+.. +.+...+..+...+.
T Consensus        14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~   91 (131)
T 2vyi_A           14 RLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALS   91 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHH
Confidence            34445555555566666666665555442 2345555555555555666666666665555532 113445555555555


Q ss_pred             HcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCC
Q 006615          219 NLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER  257 (638)
Q Consensus       219 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~  257 (638)
                      +.|++++|.+.|++..+.. +.+...+..+..++.+.|+
T Consensus        92 ~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~  129 (131)
T 2vyi_A           92 SLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE  129 (131)
T ss_dssp             HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred             HhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence            5555555555555544421 1133444444444444443

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.18  E-value=3.9e-05  Score=62.95  Aligned_cols=95  Identities=16%  Similarity=0.132  Sum_probs=47.9

Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006615          138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHL  217 (638)
Q Consensus       138 ~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~  217 (638)
                      ..+..+...+.+.|++++|...|++..... +.+...|..+...+...|++++|.+.|++..+... .+...+..+...+
T Consensus        17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~   94 (133)
T 2lni_A           17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTRKAAAL   94 (133)
T ss_dssp             HHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHHHHHHH
Confidence            344445555555555555555555554432 22344555555555555555555555555554321 1344455555555


Q ss_pred             HHcCCHHHHHHHHHhcc
Q 006615          218 VNLGKLDSALEVFSALP  234 (638)
Q Consensus       218 ~~~g~~~~A~~~~~~m~  234 (638)
                      .+.|++++|.+.|++..
T Consensus        95 ~~~~~~~~A~~~~~~~~  111 (133)
T 2lni_A           95 EAMKDYTKAMDVYQKAL  111 (133)
T ss_dssp             HHTTCHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHH
Confidence            55555555555555544

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.17  E-value=3.3e-05  Score=71.87  Aligned_cols=189  Identities=7%  Similarity=-0.056  Sum_probs=128.8

Q ss_pred             cCCChhHHHHHHHHHHcCCCCCCChhHHHHH-------HHHHHhcCChHHHHHHHHHHHhCCCCCc--------------
Q 006615           78 SAPNADSALSIMEALKSNPNFSHNQSTLHAL-------ATVLAKSQRNHELKTLIGDISSSKFLNV--------------  136 (638)
Q Consensus        78 ~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~~~~~~a~~l~~~~~~~~~~~~--------------  136 (638)
                      ..+++..|++.|..+....+-.+|  .|..+       ...+.+.++..++...+..-..  +.|+              
T Consensus        18 ~~~d~~~A~~~F~~a~~~dP~~~D--aw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~   93 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNYDESACD--AWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGD   93 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHHCTTCHH--HHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCC
T ss_pred             cCCCHHHHHHHHHHHHHhChhhhH--HHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccc
Confidence            579999999999999865422233  45544       3444444434444333333222  1221              


Q ss_pred             --------hHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--
Q 006615          137 --------SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPN--  206 (638)
Q Consensus       137 --------~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--  206 (638)
                              ....-.+...+...|++++|.++|+.+...+  |+......+...+.+.+++++|+..|+...+.. .|.  
T Consensus        94 ~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~  170 (282)
T 4f3v_A           94 ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLA  170 (282)
T ss_dssp             CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHH
T ss_pred             cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccH
Confidence                    1223456778889999999999999887755  544366666667889999999999998655431 111  


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccC--HhHHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 006615          207 SRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRT--SKQYLILVEGFVGVERFDEAKSLLNEMRDDGK  273 (638)
Q Consensus       207 ~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~  273 (638)
                      ...+..+-.++.+.|++++|.+.|++.......|.  .........++.+.|+.++|..+|+++.....
T Consensus       171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P  239 (282)
T 4f3v_A          171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP  239 (282)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence            23677778889999999999999998875333253  33566677888899999999999999977543

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.17  E-value=5.1e-05  Score=61.93  Aligned_cols=94  Identities=16%  Similarity=0.099  Sum_probs=53.7

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 006615          140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVN  219 (638)
Q Consensus       140 ~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~  219 (638)
                      +..+...|.+.|++++|+..|++..+.+ +.+..+|..+..+|.+.|++++|++.|++..+... .+...|..+..+|..
T Consensus        16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~   93 (126)
T 4gco_A           16 EKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS-KFIKGYIRKAACLVA   93 (126)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHH
Confidence            4445555666666666666666655543 33455566666666666666666666666555321 135555555556666


Q ss_pred             cCCHHHHHHHHHhccc
Q 006615          220 LGKLDSALEVFSALPL  235 (638)
Q Consensus       220 ~g~~~~A~~~~~~m~~  235 (638)
                      .|++++|.+.|++..+
T Consensus        94 ~~~~~~A~~~~~~al~  109 (126)
T 4gco_A           94 MREWSKAQRAYEDALQ  109 (126)
T ss_dssp             TTCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            6666666666655544

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.16  E-value=1.6e-05  Score=67.16  Aligned_cols=95  Identities=9%  Similarity=0.019  Sum_probs=54.4

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006615          139 NFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLV  218 (638)
Q Consensus       139 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~  218 (638)
                      .+..+...+.+.|++++|...|++....+ +.+...|..+..+|.+.|++++|.+.|++..+.... +...|..+..+|.
T Consensus        38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~~~  115 (151)
T 3gyz_A           38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQCQL  115 (151)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHH
Confidence            44455555666666666666666665553 334555666666666666666666666666553211 3455555555666


Q ss_pred             HcCCHHHHHHHHHhccc
Q 006615          219 NLGKLDSALEVFSALPL  235 (638)
Q Consensus       219 ~~g~~~~A~~~~~~m~~  235 (638)
                      +.|++++|.+.|++..+
T Consensus       116 ~lg~~~eA~~~~~~al~  132 (151)
T 3gyz_A          116 RLKAPLKAKECFELVIQ  132 (151)
T ss_dssp             HTTCHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHH
Confidence            66666666666655554

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.16  E-value=8.1e-05  Score=63.88  Aligned_cols=127  Identities=10%  Similarity=0.015  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHH
Q 006615          104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYA  183 (638)
Q Consensus       104 ~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~  183 (638)
                      .+..+...+...|+++.|...+++..+.. +.+...+..+...+...|++++|...|++..... +.+...|..+..++.
T Consensus        15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~   92 (166)
T 1a17_A           15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM   92 (166)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence            45556666677788888888887776542 3345667777788888888888888888877764 445677778888888


Q ss_pred             hcCChHHHHHHHHHHHHcCCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHhc
Q 006615          184 KTGKNFEAVETFRQVIDEGAIPNSRTYTV--MIEHLVNLGKLDSALEVFSAL  233 (638)
Q Consensus       184 ~~g~~~~A~~~~~~m~~~g~~p~~~ty~~--li~~~~~~g~~~~A~~~~~~m  233 (638)
                      +.|++++|.+.|++..+.... +...+..  +...+.+.|++++|.+.+...
T Consensus        93 ~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  143 (166)
T 1a17_A           93 ALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHK  143 (166)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence            888888888888888775321 3444433  333366778888888777654

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.15  E-value=1.4e-05  Score=67.56  Aligned_cols=106  Identities=14%  Similarity=0.003  Sum_probs=79.3

Q ss_pred             chhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHH
Q 006615          476 KFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKV  555 (638)
Q Consensus       476 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~  555 (638)
                      .|+....+..+...+.+.|++++|...|++..... +.+...|..+-.+|...|++++|...|++.....  |+      
T Consensus        17 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~------   87 (148)
T 2vgx_A           17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD--IX------   87 (148)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TT------
T ss_pred             CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CC------
Confidence            45555677777888888888888888888887642 2256677777788888888888888888887642  22      


Q ss_pred             HHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHccCCC
Q 006615          556 LIQAYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVP  606 (638)
Q Consensus       556 li~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~  606 (638)
                                      +...|..+..+|...|++++|.+.+++..+..+..
T Consensus        88 ----------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  122 (148)
T 2vgx_A           88 ----------------EPRFPFHAAECLLQXGELAEAESGLFLAQELIANX  122 (148)
T ss_dssp             ----------------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTC
T ss_pred             ----------------CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence                            34566777888888888888888888888876543

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.13  E-value=3.4e-05  Score=63.37  Aligned_cols=120  Identities=11%  Similarity=0.012  Sum_probs=94.8

Q ss_pred             CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHH
Q 006615          169 LLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLIL  248 (638)
Q Consensus       169 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l  248 (638)
                      +.+...|..+...+.+.|++++|.+.|++..+.. +.+...+..+...+...|++++|.+.|++..+.. ..+...|..+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l   90 (133)
T 2lni_A           13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRK   90 (133)
T ss_dssp             SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHH
Confidence            4457788999999999999999999999998753 2267888899999999999999999999987643 2367788999


Q ss_pred             HHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 006615          249 VEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMG  290 (638)
Q Consensus       249 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g  290 (638)
                      ...+.+.|++++|.+.|++..+...........+...+...|
T Consensus        91 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~  132 (133)
T 2lni_A           91 AAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY  132 (133)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence            999999999999999999987754333333344444444443

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.11  E-value=0.0051  Score=63.21  Aligned_cols=356  Identities=7%  Similarity=-0.063  Sum_probs=202.1

Q ss_pred             CChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCC-hHHHHHHHHHHHh-CCC-CCchHhHHHHHHHHH----hcCC
Q 006615           80 PNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQR-NHELKTLIGDISS-SKF-LNVSVNFMNLMQWYS----TSGD  152 (638)
Q Consensus        80 ~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~l~~~~~~-~~~-~~~~~~~~~ll~~~~----~~g~  152 (638)
                      ++++.+..+|+.....   .|+...|...+....+.+. .+....+|+.... .|. ..+...|...+..+.    ..|+
T Consensus        28 ~~~e~~~~iferal~~---~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~  104 (493)
T 2uy1_A           28 KDYRSLESLFGRCLKK---SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTR  104 (493)
T ss_dssp             TCHHHHHHHHHHHSTT---CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHH
T ss_pred             CCHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHH
Confidence            7899999999998864   4688889888888877663 3556777877664 342 335566777776554    3467


Q ss_pred             HHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHh-------------cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 006615          153 LELVLSTWNEYRQRAKLLSTESYNIVMSVYAK-------------TGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVN  219 (638)
Q Consensus       153 ~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~-------------~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~  219 (638)
                      .+.+..+|++........-...|......-..             .+.+..|..+++++...--..+...|...+..-..
T Consensus       105 ~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~  184 (493)
T 2uy1_A          105 IEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEME  184 (493)
T ss_dssp             HHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhc
Confidence            88999999999873211111122222111000             11223344444444321000123344444433211


Q ss_pred             c--CC-----HHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCh
Q 006615          220 L--GK-----LDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFI  292 (638)
Q Consensus       220 ~--g~-----~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~  292 (638)
                      .  |-     .+.+..+|+++.... .-+...|-..+..+.+.|++++|..+|++....   |......+  .|......
T Consensus       185 ~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~--~y~~~~e~  258 (493)
T 2uy1_A          185 NGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL--YYGLVMDE  258 (493)
T ss_dssp             CTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH--HHHHHTTC
T ss_pred             CCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH--HHHhhcch
Confidence            1  11     345667888776532 335677888888888899999999999998877   54433211  12222122


Q ss_pred             HHHHHHHHHhCcCccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccc
Q 006615          293 QGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWT  372 (638)
Q Consensus       293 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (638)
                      ++.   ++.+...-...                                         ...    +............| 
T Consensus       259 ~~~---~~~l~~~~~~~-----------------------------------------~~~----~~~~~~~~~~~~lw-  289 (493)
T 2uy1_A          259 EAV---YGDLKRKYSMG-----------------------------------------EAE----SAEKVFSKELDLLR-  289 (493)
T ss_dssp             THH---HHHHHHHTC-------------------------------------------------------CHHHHHHHH-
T ss_pred             hHH---HHHHHHHHHhh-----------------------------------------ccc----hhhhhcccccHHHH-
Confidence            222   22211000000                                         000    00000000000111 


Q ss_pred             hHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHH--HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006615          373 TRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEK--MLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDF  450 (638)
Q Consensus       373 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~--li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~  450 (638)
                       ..........+..+.|..+|... ...+  .+...|..  .+...+ .++.+.|..+|+...+.-.. +...+...++.
T Consensus       290 -~~y~~~~~r~~~~~~AR~i~~~A-~~~~--~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~~~-~~~~~~~yid~  363 (493)
T 2uy1_A          290 -INHLNYVLKKRGLELFRKLFIEL-GNEG--VGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKHPD-STLLKEEFFLF  363 (493)
T ss_dssp             -HHHHHHHHHHHCHHHHHHHHHHH-TTSC--CCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             -HHHHHHHHHcCCHHHHHHHHHHh-hCCC--CChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence             11223333456789999999988 4333  24444443  333222 34799999999998875422 34556667777


Q ss_pred             HcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 006615          451 YGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIF  508 (638)
Q Consensus       451 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~  508 (638)
                      ..+.|+.+.|..+|+.+.+        . ...|...+.--...|+.+.+.++++++.+
T Consensus       364 e~~~~~~~~aR~l~er~~k--------~-~~lw~~~~~fE~~~G~~~~~r~v~~~~~~  412 (493)
T 2uy1_A          364 LLRIGDEENARALFKRLEK--------T-SRMWDSMIEYEFMVGSMELFRELVDQKMD  412 (493)
T ss_dssp             HHHHTCHHHHHHHHHHSCC--------B-HHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHH--------H-HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            7889999999999999632        1 36788888877888999999999988864

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.10  E-value=5e-05  Score=61.97  Aligned_cols=120  Identities=12%  Similarity=-0.008  Sum_probs=95.9

Q ss_pred             CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHH
Q 006615          171 STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE  250 (638)
Q Consensus       171 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~  250 (638)
                      +...|..+...+...|++++|.+.|++..+.. +.+...+..+...+...|++++|.+.+++..+.. ..+...|..+..
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~   88 (131)
T 2vyi_A           11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL   88 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence            45678888899999999999999999998853 2367888899999999999999999999987643 235778899999


Q ss_pred             HHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCh
Q 006615          251 GFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFI  292 (638)
Q Consensus       251 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~  292 (638)
                      .+...|++++|...|++..............+...+...|+.
T Consensus        89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence            999999999999999999876533333334555666666553

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.10  E-value=2.1e-05  Score=68.77  Aligned_cols=122  Identities=10%  Similarity=0.030  Sum_probs=88.1

Q ss_pred             HHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHH-HHhcCCH-
Q 006615           76 LRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQW-YSTSGDL-  153 (638)
Q Consensus        76 l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~-~~~~g~~-  153 (638)
                      +...|++++|+..|+...+..  +.+...+..+...+...|++++|...+++..+.. +.+...+..+... +...|++ 
T Consensus        20 ~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~   96 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHM   96 (177)
T ss_dssp             CC-----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCC
T ss_pred             hhhccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcc
Confidence            455678888888888777543  2355678888888888888888888888877643 2355566677777 6778887 


Q ss_pred             -HHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 006615          154 -ELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE  201 (638)
Q Consensus       154 -~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  201 (638)
                       ++|...|++....+ +.+...|..+...+...|++++|...|++..+.
T Consensus        97 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  144 (177)
T 2e2e_A           97 TAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL  144 (177)
T ss_dssp             CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence             88888888887764 345677778888888888888888888888774

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.10  E-value=1.9e-05  Score=75.08  Aligned_cols=193  Identities=10%  Similarity=0.036  Sum_probs=122.2

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH
Q 006615          101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMS  180 (638)
Q Consensus       101 ~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~  180 (638)
                      +...+..+...+...|++++|...+++..+.. +.+...|..+...|.+.|++++|...+++..+.+ +.+...|..+..
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~   80 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ   80 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            34466777778888899999999888887643 3366778888888899999999999999888764 446778888888


Q ss_pred             HHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHH
Q 006615          181 VYAKTGKNFEAVETFRQVIDEGAIPNS-RTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD  259 (638)
Q Consensus       181 ~~~~~g~~~~A~~~~~~m~~~g~~p~~-~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~  259 (638)
                      +|.+.|++++|...|++..+..  |+. ..+...+....+.........    ........+......+-. + ..|+.+
T Consensus        81 ~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~~l~~-l-~~~~~~  152 (281)
T 2c2l_A           81 CQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALRIAKKKRWNS----IEERRIHQESELHSYLTR-L-IAAERE  152 (281)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHHHHHHHHHH----HHHTCCCCCCHHHHHHHH-H-HHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHHHHHHHHHH----HHHHHHhhhHHHHHHHHH-H-HHHHHH
Confidence            8999999999999998877632  211 111112221111111111111    111122334444443322 2 268888


Q ss_pred             HHHHHHHHHHhCCCCCCHHHH-H-HHHHHHHc-CChHHHHHHHHHhCcC
Q 006615          260 EAKSLLNEMRDDGKFPGRAMR-V-ALERMQEM-GFIQGANEFLREMLPD  305 (638)
Q Consensus       260 ~A~~l~~~m~~~g~~p~~~~~-~-ll~~~~~~-g~~~~a~~~~~~~~~~  305 (638)
                      +|.+.+++..+.  .|+.... . +-..+.+. +.++++.++|......
T Consensus       153 ~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~  199 (281)
T 2c2l_A          153 RELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK  199 (281)
T ss_dssp             HHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred             HHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            898888877654  5665443 2 32333333 6788899999887653

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.09  E-value=3.3e-05  Score=67.45  Aligned_cols=120  Identities=11%  Similarity=0.072  Sum_probs=79.1

Q ss_pred             hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHH-HHccCCh
Q 006615          418 RHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRT-LTKCKRD  496 (638)
Q Consensus       418 ~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~  496 (638)
                      ..|++++|...++....... .+...+..+...|...|++++|...|++..+..     |+....|..+... +...|++
T Consensus        22 ~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~la~~l~~~~~~~   95 (177)
T 2e2e_A           22 SQQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-----GENAELYAALATVLYYQASQH   95 (177)
T ss_dssp             -----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----CSCHHHHHHHHHHHHHHTTTC
T ss_pred             hccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCHHHHHHHHHHHHHhcCCc
Confidence            45666677777776665543 255667777777777777777777777766542     2223566666666 6677777


Q ss_pred             --HHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006615          497 --FDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQN  544 (638)
Q Consensus       497 --~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~  544 (638)
                        ++|...|++..+.. +-+...+..+...|...|++++|...|+++.+.
T Consensus        96 ~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  144 (177)
T 2e2e_A           96 MTAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL  144 (177)
T ss_dssp             CCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             chHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence              88888888877652 124566777777888888888888888887764

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.06  E-value=0.0035  Score=60.28  Aligned_cols=156  Identities=12%  Similarity=0.012  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHhCCCCCchHhHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhc-C-ChHHHHHHHH
Q 006615          120 ELKTLIGDISSSKFLNVSVNFMNLMQWYSTSG-DLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKT-G-KNFEAVETFR  196 (638)
Q Consensus       120 ~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g-~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~-g-~~~~A~~~~~  196 (638)
                      +|..+++.+.... +.+..+|+.--..+...| .+++++.+++.+...+ +-+..+|+.--..+.+. + ++++++++++
T Consensus        72 ~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~  149 (349)
T 3q7a_A           72 RALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIEYIH  149 (349)
T ss_dssp             HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence            4444444444322 122223444334444444 3566666666655543 33455555555444444 4 5556666666


Q ss_pred             HHHHcCCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHhcccCCCccCHhHHHHHHHHHHccCC-------HHHH
Q 006615          197 QVIDEGAIPNSRTYTVMIEHLVNLGKLD--------SALEVFSALPLMRIKRTSKQYLILVEGFVGVER-------FDEA  261 (638)
Q Consensus       197 ~m~~~g~~p~~~ty~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-------~~~A  261 (638)
                      .+.+...+ |-.+|+--.-...+.|.++        ++.+.++++.+.. ..|...|+-....+.+.++       ++++
T Consensus       150 k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eE  227 (349)
T 3q7a_A          150 GSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDE  227 (349)
T ss_dssp             HHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHH
T ss_pred             HHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHH
Confidence            66553222 4444443333333333333        6666666666543 2366667666666666654       5777


Q ss_pred             HHHHHHHHhCCCCCCHHH
Q 006615          262 KSLLNEMRDDGKFPGRAM  279 (638)
Q Consensus       262 ~~l~~~m~~~g~~p~~~~  279 (638)
                      ++.+++.......-...+
T Consensus       228 Le~~~~aI~~~P~n~SaW  245 (349)
T 3q7a_A          228 LIYILKSIHLIPHNVSAW  245 (349)
T ss_dssp             HHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHhCCCCHHHH
Confidence            777777776544433344

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.04  E-value=8.9e-05  Score=72.44  Aligned_cols=130  Identities=14%  Similarity=0.046  Sum_probs=93.7

Q ss_pred             hHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--------------HHhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 006615          137 SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLS--------------TESYNIVMSVYAKTGKNFEAVETFRQVIDEG  202 (638)
Q Consensus       137 ~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~--------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  202 (638)
                      ...+..+...|.+.|++++|...|++.....-...              ..+|..+..+|.+.|++++|++.|++..+..
T Consensus       147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~  226 (336)
T 1p5q_A          147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD  226 (336)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            44566777788888888888888888777641111              4678888888888888888888888887753


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHH-HHHHHHH
Q 006615          203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEA-KSLLNEM  268 (638)
Q Consensus       203 ~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A-~~l~~~m  268 (638)
                      . .+...|..+..+|...|++++|.+.|++..+.. +-+...+..+...+.+.|+.++| ..+|+.|
T Consensus       227 p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~  291 (336)
T 1p5q_A          227 S-NNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANM  291 (336)
T ss_dssp             T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             C-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2 267777778888888888888888888776542 22456777777778888887777 4456655

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.03  E-value=1.9e-05  Score=66.68  Aligned_cols=94  Identities=16%  Similarity=0.090  Sum_probs=43.4

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHH
Q 006615          174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFV  253 (638)
Q Consensus       174 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~  253 (638)
                      .+..+...+.+.|++++|...|++...... .+...|..+..+|...|++++|.+.|++..... +.+...|..+..+|.
T Consensus        23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~  100 (148)
T 2vgx_A           23 QLYSLAFNQYQSGXYEDAHXVFQALCVLDH-YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECLL  100 (148)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence            344444444455555555555554444211 134444444444455555555555555444321 113344444555555


Q ss_pred             ccCCHHHHHHHHHHHH
Q 006615          254 GVERFDEAKSLLNEMR  269 (638)
Q Consensus       254 ~~g~~~~A~~l~~~m~  269 (638)
                      ..|++++|...|++..
T Consensus       101 ~~g~~~~A~~~~~~al  116 (148)
T 2vgx_A          101 QXGELAEAESGLFLAQ  116 (148)
T ss_dssp             HTTCHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHH
Confidence            5555555555555443

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.02  E-value=0.0015  Score=62.95  Aligned_cols=140  Identities=9%  Similarity=-0.049  Sum_probs=103.8

Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-C-CHH
Q 006615          148 STSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTG-KNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL-G-KLD  224 (638)
Q Consensus       148 ~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~-g-~~~  224 (638)
                      .+.+..++|+++++.+...+ +-+..+||.--..+...| .+++++++++.+.....+ +..+|+.--..+.+. + +++
T Consensus        65 ~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~  142 (349)
T 3q7a_A           65 AKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPV  142 (349)
T ss_dssp             HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCH
T ss_pred             HhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChH
Confidence            34455678999999999886 445677888888888888 599999999999986543 677787766666666 6 889


Q ss_pred             HHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHH--------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 006615          225 SALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD--------EAKSLLNEMRDDGKFPGRAMRVALERMQEMG  290 (638)
Q Consensus       225 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~--------~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g  290 (638)
                      ++.++++.+.+.. ..|..+|+--.-.+.+.|.++        ++++.++++.+..+....++..-...+.+.+
T Consensus       143 ~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~  215 (349)
T 3q7a_A          143 SEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRP  215 (349)
T ss_dssp             HHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTST
T ss_pred             HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcc
Confidence            9999999998754 347778877666666656565        8999999998877666666654333333333

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.01  E-value=6.5e-05  Score=73.41  Aligned_cols=132  Identities=10%  Similarity=-0.095  Sum_probs=106.2

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--------------HHHHHHHHHHHcccCCHHHHHHHHHhchhc
Q 006615          405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLP--------------FSTIRLIIDFYGISKKADAALKAFHDDRTL  470 (638)
Q Consensus       405 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~--------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~  470 (638)
                      +...+..+-..+.+.|++++|...|++.........              ...|..+..+|.+.|++++|...|+...+.
T Consensus       146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  225 (336)
T 1p5q_A          146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL  225 (336)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            345678888899999999999999999887764432              578888888999999999999999998875


Q ss_pred             cCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCc-chhhHHHHHHHHHccCCHHHH-HHHHHHHHh
Q 006615          471 CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVP-DVQTFSGLMYHFALQGDEKIV-QKLFSMVRQ  543 (638)
Q Consensus       471 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a-~~l~~~m~~  543 (638)
                           .|+...+|..+..+|...|++++|++.|++..+.  .| +...+..+..++...|+.++| ..+++.|..
T Consensus       226 -----~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~  293 (336)
T 1p5q_A          226 -----DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE  293 (336)
T ss_dssp             -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 3444578888999999999999999999998875  34 466788888888888888887 456666553

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.00  E-value=0.00028  Score=56.09  Aligned_cols=93  Identities=16%  Similarity=0.130  Sum_probs=44.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 006615          140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVN  219 (638)
Q Consensus       140 ~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~  219 (638)
                      +..+...+...|++++|...|++..... +.+...|..+...+.+.|++++|...+++..+... .+...+..+...+..
T Consensus         7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~   84 (118)
T 1elw_A            7 LKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAALEF   84 (118)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHH
Confidence            4444444555555555555555554432 22344444455555555555555555555544311 134444444444555


Q ss_pred             cCCHHHHHHHHHhcc
Q 006615          220 LGKLDSALEVFSALP  234 (638)
Q Consensus       220 ~g~~~~A~~~~~~m~  234 (638)
                      .|++++|.+.|++..
T Consensus        85 ~~~~~~A~~~~~~~~   99 (118)
T 1elw_A           85 LNRFEEAKRTYEEGL   99 (118)
T ss_dssp             TTCHHHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHHH
Confidence            555555555554444

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=97.98  E-value=0.0003  Score=65.35  Aligned_cols=185  Identities=10%  Similarity=-0.042  Sum_probs=132.8

Q ss_pred             hcCChHHHHHHHHHHHhCCCCCchHhHHHH-------HHHHHhcCCHHHHHHHHHHHHhcCCCCC---------------
Q 006615          114 KSQRNHELKTLIGDISSSKFLNVSVNFMNL-------MQWYSTSGDLELVLSTWNEYRQRAKLLS---------------  171 (638)
Q Consensus       114 ~~~~~~~a~~l~~~~~~~~~~~~~~~~~~l-------l~~~~~~g~~~~A~~l~~~m~~~~~~p~---------------  171 (638)
                      ..++...|.+.|.+..+.. +.....|..+       ...+.+.++..+++..+++-..  +.|+               
T Consensus        18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~   94 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI   94 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred             cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence            5789999999999998754 2334456655       4555555555555555444333  2221               


Q ss_pred             -------HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccC--H
Q 006615          172 -------TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRT--S  242 (638)
Q Consensus       172 -------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~  242 (638)
                             ...+-.+...+...|++++|.++|+.+...+  |+....-.+...+.+.+++++|+..|+...... .|.  .
T Consensus        95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~  171 (282)
T 4f3v_A           95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG  171 (282)
T ss_dssp             EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred             ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence                   1233456677889999999999999988754  654456666668899999999999998765432 121  3


Q ss_pred             hHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-H--HHHHHHHHHHHcCChHHHHHHHHHhCc
Q 006615          243 KQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG-R--AMRVALERMQEMGFIQGANEFLREMLP  304 (638)
Q Consensus       243 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~--~~~~ll~~~~~~g~~~~a~~~~~~~~~  304 (638)
                      ..+..+-.++...|++++|+..|++.......|. .  ..+..-.++.+.|+.++|...|+++..
T Consensus       172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a  236 (282)
T 4f3v_A          172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT  236 (282)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            4677788999999999999999999985443365 2  345777889999999999999999864

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=97.97  E-value=8e-05  Score=62.27  Aligned_cols=104  Identities=11%  Similarity=-0.059  Sum_probs=75.1

Q ss_pred             chhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHH
Q 006615          476 KFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKV  555 (638)
Q Consensus       476 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~  555 (638)
                      .|+....+..+...+.+.|++++|.+.|++..... +.+...|..+..+|...|++++|...|+...+..  |+      
T Consensus        14 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~------   84 (142)
T 2xcb_A           14 SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD--IN------   84 (142)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT------
T ss_pred             CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CC------
Confidence            45445666677777888888888888888877642 2255667777778888888888888888877642  22      


Q ss_pred             HHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHccC
Q 006615          556 LIQAYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKIND  604 (638)
Q Consensus       556 li~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~  604 (638)
                                      +...+..+..+|...|++++|.+.+++..+..+
T Consensus        85 ----------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  117 (142)
T 2xcb_A           85 ----------------EPRFPFHAAECHLQLGDLDGAESGFYSARALAA  117 (142)
T ss_dssp             ----------------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             ----------------CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence                            345566777788888888888888888877654

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=97.97  E-value=0.00019  Score=68.03  Aligned_cols=186  Identities=9%  Similarity=-0.073  Sum_probs=116.6

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHH
Q 006615          405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYS  484 (638)
Q Consensus       405 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~  484 (638)
                      +...+..+...+.+.|++++|...|++....... +...+..+..+|.+.|++++|...++...+.     .|+....|.
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~   76 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALEL-----DGQSVKAHF   76 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-----CTTCHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCCHHHHH
Confidence            4456677778888899999999999988876533 6778888888888999999999999887764     444457888


Q ss_pred             HHHHHHHccCChHHHHHHHHHHHhCCCCcch-hhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHH
Q 006615          485 SLLRTLTKCKRDFDAINVLEEMIFSGIVPDV-QTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY  563 (638)
Q Consensus       485 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~  563 (638)
                      .+..+|...|++++|.+.|++..+.  .|+. ..+...+....+.   .++ .-+..........+......+ ..+...
T Consensus        77 ~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~i~~~l-~~l~~~  149 (281)
T 2c2l_A           77 FLGQCQLEMESYDEAIANLQRAYSL--AKEQRLNFGDDIPSALRI---AKK-KRWNSIEERRIHQESELHSYL-TRLIAA  149 (281)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH--HHHTTCCCCSHHHHHHHH---HHH-HHHHHHHHTCCCCCCHHHHHH-HHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHh--CccchhhHHHHHHHHHHH---HHH-HHHHHHHHHHHhhhHHHHHHH-HHHHHH
Confidence            8888899999999999999887763  2322 1222222222211   111 122223333334443333322 222221


Q ss_pred             ---------hhhCCCCCCHHH-HHHHHHHHhcc-CcHHHHHHHHHHHHHcc
Q 006615          564 ---------LSNSNLMPDAAT-KELLKKSLWKE-GRRKEAAAVEERCEKIN  603 (638)
Q Consensus       564 ---------m~~~g~~p~~~~-~~~li~~~~~~-g~~~~A~~~~~~~~~~~  603 (638)
                               -......|+... ...+...+.+. +.+++|.++|++..+..
T Consensus       150 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~  200 (281)
T 2c2l_A          150 ERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKR  200 (281)
T ss_dssp             HHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTT
T ss_pred             HHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence                     122345666443 34444445554 77899999999887643

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.96  E-value=0.0037  Score=63.19  Aligned_cols=194  Identities=8%  Similarity=-0.049  Sum_probs=96.6

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCC-C-C--HHHHHHHHHHHcccCCHHHHHHHHHhchhccCCC---cc
Q 006615          406 VYALEKMLTILARHGHVELVDRLIAKLRSD--GMR-L-P--FSTIRLIIDFYGISKKADAALKAFHDDRTLCGPI---SK  476 (638)
Q Consensus       406 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~--g~~-~-~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~  476 (638)
                      ...+..++..|...|++++|..++++....  .+. | .  ...+..+...+...|++++|...|.+..+.....   ..
T Consensus       175 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~~~~~~~~  254 (434)
T 4b4t_Q          175 VDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESYHNLTTHNS  254 (434)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHTTTSSC
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhh
Confidence            446788889999999999999999876532  121 1 1  2456667778888999999998887765422111   11


Q ss_pred             -hhHHHHHHHHHHHHHccCChHHHHHHHHHH--HhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhH
Q 006615          477 -FKLMLLYSSLLRTLTKCKRDFDAINVLEEM--IFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMF  553 (638)
Q Consensus       477 -~~~~~~~~~li~~~~~~g~~~~A~~l~~~m--~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~  553 (638)
                       +........++-+....+..+.....+..-  ......|+...+..+..++.. +++......+...... +..+....
T Consensus       255 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~l~~~~~~~~~~~~~-~~~~~~~~  332 (434)
T 4b4t_Q          255 YEKACQVLKYMLLSKIMLNLIDDVKNILNAKYTKETYQSRGIDAMKAVAEAYNN-RSLLDFNTALKQYEKE-LMGDELTR  332 (434)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHCSSSSTTCCCHHHHHHHHHHHHHHH-TCHHHHHHHHHHTHHH-HTCSHHHH
T ss_pred             HHHHHHHHHHHHHHHHhccchhHHHhHHHHHHHHHHhcchhhhHHHHHHHHHHh-hhHHHHHHHHHHHHHH-HcccHHHH
Confidence             111011111112222223333333333221  112234556777788877764 4555554444433221 12233322


Q ss_pred             HHHHHHHHH---H-hhhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHccC
Q 006615          554 KVLIQAYCK---Y-LSNSNLMP-DAATKELLKKSLWKEGRRKEAAAVEERCEKIND  604 (638)
Q Consensus       554 ~~li~~~~~---~-m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~  604 (638)
                      ..+-..+..   . +... ..| +..+...+...+.-  ..+++++.+..|...|.
T Consensus       333 ~~~~~l~~~~~~~~l~~~-~~~y~~i~l~~la~~l~~--~~~~~E~~l~~lI~~~~  385 (434)
T 4b4t_Q          333 SHFNALYDTLLESNLCKI-IEPFECVEISHISKIIGL--DTQQVEGKLSQMILDKI  385 (434)
T ss_dssp             HHHHHHHHHHHHHHHHHH-HSSCSCEEHHHHHHHHTC--CHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHhcCHHHHHHHhCc--CHHHHHHHHHHHHhCCC
Confidence            222111111   1 1111 111 22234444444432  45677877777776554

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=97.94  E-value=0.00011  Score=57.93  Aligned_cols=95  Identities=13%  Similarity=0.170  Sum_probs=43.9

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCcc--CHhHHHHHHHH
Q 006615          174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKR--TSKQYLILVEG  251 (638)
Q Consensus       174 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~  251 (638)
                      .|..+...+.+.|++++|...|++..+... .+...+..+...+...|++++|.+.|++..+.. ..  +...|..+...
T Consensus         8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~   85 (112)
T 2kck_A            8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADA   85 (112)
T ss_dssp             GGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHH
Confidence            344444444444555555555544444311 133444444444455555555555554444321 11  24444555555


Q ss_pred             HHcc-CCHHHHHHHHHHHHh
Q 006615          252 FVGV-ERFDEAKSLLNEMRD  270 (638)
Q Consensus       252 ~~~~-g~~~~A~~l~~~m~~  270 (638)
                      +.+. |++++|.+.+++...
T Consensus        86 ~~~~~~~~~~A~~~~~~~~~  105 (112)
T 2kck_A           86 LRYIEGKEVEAEIAEARAKL  105 (112)
T ss_dssp             HTTCSSCSHHHHHHHHHHGG
T ss_pred             HHHHhCCHHHHHHHHHHHhh
Confidence            5555 555555555555544

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=97.91  E-value=0.00028  Score=57.30  Aligned_cols=93  Identities=20%  Similarity=0.157  Sum_probs=47.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 006615          140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVN  219 (638)
Q Consensus       140 ~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~  219 (638)
                      +..+...+.+.|++++|...|++..+.+ +.+...|..+..++.+.|++++|...|++..+... -+...|..+..++..
T Consensus         7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~   84 (126)
T 3upv_A            7 ARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQIA   84 (126)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHH
Confidence            4444455555555555555555555443 23345555555555555555555555555554321 134445555555555


Q ss_pred             cCCHHHHHHHHHhcc
Q 006615          220 LGKLDSALEVFSALP  234 (638)
Q Consensus       220 ~g~~~~A~~~~~~m~  234 (638)
                      .|++++|.+.|++..
T Consensus        85 ~~~~~~A~~~~~~al   99 (126)
T 3upv_A           85 VKEYASALETLDAAR   99 (126)
T ss_dssp             TTCHHHHHHHHHHHH
T ss_pred             HhCHHHHHHHHHHHH
Confidence            555555555555444

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=97.90  E-value=0.0001  Score=60.16  Aligned_cols=93  Identities=12%  Similarity=0.043  Sum_probs=51.1

Q ss_pred             HHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcc--------h
Q 006615          444 IRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPD--------V  515 (638)
Q Consensus       444 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--------~  515 (638)
                      +..+...|.+.|++++|+..|++..+.     .|+....|+.+..+|.+.|++++|++.|++.++.  .|+        .
T Consensus        11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~-----~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a   83 (127)
T 4gcn_A           11 EKDLGNAAYKQKDFEKAHVHYDKAIEL-----DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV--GRETRADYKLIA   83 (127)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHTTCCHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHh--CcccchhhHHHH
Confidence            334444555555555555555554443     2333455666666666666666666666665542  121        1


Q ss_pred             hhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006615          516 QTFSGLMYHFALQGDEKIVQKLFSMVRQ  543 (638)
Q Consensus       516 ~t~~~li~~~~~~g~~~~a~~l~~~m~~  543 (638)
                      .+|..+-.++...|++++|++.|++...
T Consensus        84 ~~~~~lg~~~~~~~~~~~A~~~~~kal~  111 (127)
T 4gcn_A           84 KAMSRAGNAFQKQNDLSLAVQWFHRSLS  111 (127)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            2455555666666677777776666654

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=97.89  E-value=0.0003  Score=55.95  Aligned_cols=100  Identities=16%  Similarity=0.093  Sum_probs=85.5

Q ss_pred             HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHH
Q 006615          172 TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEG  251 (638)
Q Consensus       172 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~  251 (638)
                      ...|..+...+...|++++|...|++..+.. +.+...+..+...+.+.|++++|.+.+++..+.. +.+...|..+..+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~   81 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA   81 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence            5678888899999999999999999998853 2367888889999999999999999999987643 2357788899999


Q ss_pred             HHccCCHHHHHHHHHHHHhCCC
Q 006615          252 FVGVERFDEAKSLLNEMRDDGK  273 (638)
Q Consensus       252 ~~~~g~~~~A~~l~~~m~~~g~  273 (638)
                      +...|++++|.+.+++..+.+.
T Consensus        82 ~~~~~~~~~A~~~~~~~~~~~~  103 (118)
T 1elw_A           82 LEFLNRFEEAKRTYEEGLKHEA  103 (118)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTCT
T ss_pred             HHHHhhHHHHHHHHHHHHHcCC
Confidence            9999999999999999987543

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.88  E-value=0.00037  Score=70.72  Aligned_cols=198  Identities=9%  Similarity=0.025  Sum_probs=130.3

Q ss_pred             HHHHHHcCCChhHHHHHHHHHHcCCCCCCCh---------------hHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCC
Q 006615           72 VTHALRSAPNADSALSIMEALKSNPNFSHNQ---------------STLHALATVLAKSQRNHELKTLIGDISSS-KFLN  135 (638)
Q Consensus        72 ~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~---------------~~~~~li~~~~~~~~~~~a~~l~~~~~~~-~~~~  135 (638)
                      -.+.+...|++++|++.|..+.+...-..+.               ..+..+...|...|++++|...+....+. +..+
T Consensus        10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~   89 (434)
T 4b4t_Q           10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA   89 (434)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence            3466788899999999999988543222221               23677888888889999998888776531 1112


Q ss_pred             ch----HhHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCC-CHHhHHHHHHHHHhcCChHHHHHHHHHHHHc--CC-
Q 006615          136 VS----VNFMNLMQWYSTSGDLELVLSTWNEYRQR----AKLL-STESYNIVMSVYAKTGKNFEAVETFRQVIDE--GA-  203 (638)
Q Consensus       136 ~~----~~~~~ll~~~~~~g~~~~A~~l~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~-  203 (638)
                      +.    .+.+.+-..+...|+.+.|..+++.....    +..+ -..++..+...|...|++++|..++++....  +. 
T Consensus        90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~  169 (434)
T 4b4t_Q           90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD  169 (434)
T ss_dssp             HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred             chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence            21    12333334444567888888888776532    2222 2456777888888889999998888887653  11 


Q ss_pred             -CC-CHHHHHHHHHHHHHcCCHHHHHHHHHhcccC----CCccC--HhHHHHHHHHHHccCCHHHHHHHHHHHH
Q 006615          204 -IP-NSRTYTVMIEHLVNLGKLDSALEVFSALPLM----RIKRT--SKQYLILVEGFVGVERFDEAKSLLNEMR  269 (638)
Q Consensus       204 -~p-~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~  269 (638)
                       .| ...+|..++..|...|++++|..++++....    +..+.  ...+..+...+...|++++|...|.+..
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~  243 (434)
T 4b4t_Q          170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF  243 (434)
T ss_dssp             CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence             11 2456777888888888888888888765431    11111  2456666677778888888888777663

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=97.87  E-value=0.00014  Score=57.32  Aligned_cols=95  Identities=14%  Similarity=0.055  Sum_probs=52.5

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHH
Q 006615          139 NFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIP--NSRTYTVMIEH  216 (638)
Q Consensus       139 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~ty~~li~~  216 (638)
                      .+..+...+.+.|++++|...|++..+.. +.+...|..+...+...|++++|.+.|++..+.. +.  +...+..+...
T Consensus         8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~   85 (112)
T 2kck_A            8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADA   85 (112)
T ss_dssp             GGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHH
Confidence            34445555555666666666666555543 2344555555555666666666666666655531 11  34555555555


Q ss_pred             HHHc-CCHHHHHHHHHhccc
Q 006615          217 LVNL-GKLDSALEVFSALPL  235 (638)
Q Consensus       217 ~~~~-g~~~~A~~~~~~m~~  235 (638)
                      +.+. |++++|.+.++....
T Consensus        86 ~~~~~~~~~~A~~~~~~~~~  105 (112)
T 2kck_A           86 LRYIEGKEVEAEIAEARAKL  105 (112)
T ss_dssp             HTTCSSCSHHHHHHHHHHGG
T ss_pred             HHHHhCCHHHHHHHHHHHhh
Confidence            6666 666666666665554

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=97.87  E-value=0.00019  Score=58.30  Aligned_cols=95  Identities=5%  Similarity=-0.129  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHH
Q 006615          408 ALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLL  487 (638)
Q Consensus       408 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li  487 (638)
                      .|..+...+.+.|++++|...|++..+.... +...+..+..+|.+.|++++|...|+...+.     .|+....|..+.
T Consensus         6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~lg   79 (126)
T 3upv_A            6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEK-----DPNFVRAYIRKA   79 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCcHHHHHHHH
Confidence            3445555666666666666666666654422 4455555556666666666666666655543     222234555555


Q ss_pred             HHHHccCChHHHHHHHHHHHh
Q 006615          488 RTLTKCKRDFDAINVLEEMIF  508 (638)
Q Consensus       488 ~~~~~~g~~~~A~~l~~~m~~  508 (638)
                      ..+...|++++|.+.|++..+
T Consensus        80 ~~~~~~~~~~~A~~~~~~al~  100 (126)
T 3upv_A           80 TAQIAVKEYASALETLDAART  100 (126)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhCHHHHHHHHHHHHH
Confidence            566666666666666665554

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=97.86  E-value=0.00018  Score=60.01  Aligned_cols=94  Identities=13%  Similarity=0.016  Sum_probs=54.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 006615          140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVN  219 (638)
Q Consensus       140 ~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~  219 (638)
                      +..+...+.+.|++++|...|++....+ +.+...|..+..++.+.|++++|...|++..+... -+...+..+..+|..
T Consensus        21 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~   98 (142)
T 2xcb_A           21 LYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPRFPFHAAECHLQ   98 (142)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHH
Confidence            4445555666666666666666665543 33455566666666666666666666666665421 144455555566666


Q ss_pred             cCCHHHHHHHHHhccc
Q 006615          220 LGKLDSALEVFSALPL  235 (638)
Q Consensus       220 ~g~~~~A~~~~~~m~~  235 (638)
                      .|++++|.+.|+...+
T Consensus        99 ~g~~~~A~~~~~~al~  114 (142)
T 2xcb_A           99 LGDLDGAESGFYSARA  114 (142)
T ss_dssp             TTCHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHH
Confidence            6666666666665543

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=97.84  E-value=8.6e-05  Score=60.58  Aligned_cols=94  Identities=13%  Similarity=0.145  Sum_probs=42.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CCC----HHHHHHH
Q 006615          140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGA--IPN----SRTYTVM  213 (638)
Q Consensus       140 ~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~----~~ty~~l  213 (638)
                      +..+...+...|++++|...|++..... +.+...+..+...+...|++++|...|++..+...  .++    ..++..+
T Consensus         7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l   85 (131)
T 1elr_A            7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI   85 (131)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence            4444445555555555555555554432 22344444455555555555555555555444210  111    3334444


Q ss_pred             HHHHHHcCCHHHHHHHHHhcc
Q 006615          214 IEHLVNLGKLDSALEVFSALP  234 (638)
Q Consensus       214 i~~~~~~g~~~~A~~~~~~m~  234 (638)
                      ...+.+.|++++|.+.|++..
T Consensus        86 a~~~~~~~~~~~A~~~~~~~~  106 (131)
T 1elr_A           86 GNSYFKEEKYKDAIHFYNKSL  106 (131)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHH
Confidence            444444444444444444443

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=97.83  E-value=0.00027  Score=57.60  Aligned_cols=110  Identities=9%  Similarity=-0.083  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCC--CcchhHHHHH
Q 006615          406 VYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGP--ISKFKLMLLY  483 (638)
Q Consensus       406 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~~  483 (638)
                      ...+..+-..+.+.|++++|++.|++..+.... +...|..+..+|.+.|++++|+..++...+..+.  ...+....+|
T Consensus         8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~   86 (127)
T 4gcn_A            8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM   86 (127)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence            345667888899999999999999998877543 6788889999999999999999999987764221  1122234578


Q ss_pred             HHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhH
Q 006615          484 SSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTF  518 (638)
Q Consensus       484 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~  518 (638)
                      ..+...+...|++++|++.|++..+.  .||..+.
T Consensus        87 ~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~  119 (127)
T 4gcn_A           87 SRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELV  119 (127)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHH
Confidence            88999999999999999999998874  4565443

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=97.82  E-value=0.00034  Score=59.99  Aligned_cols=97  Identities=9%  Similarity=0.011  Sum_probs=57.3

Q ss_pred             hHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006615          137 SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH  216 (638)
Q Consensus       137 ~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~  216 (638)
                      ...+..+...+.+.|++++|...|++..+.+ +.+...|..+..+|.+.|++++|+..|++..+... -+...|..+...
T Consensus        11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~   88 (164)
T 3sz7_A           11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-KYSKAWSRLGLA   88 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence            3445555666666666666666666666543 23455666666666666666666666666665421 135555566666


Q ss_pred             HHHcCCHHHHHHHHHhccc
Q 006615          217 LVNLGKLDSALEVFSALPL  235 (638)
Q Consensus       217 ~~~~g~~~~A~~~~~~m~~  235 (638)
                      |.+.|++++|.+.|++..+
T Consensus        89 ~~~~g~~~~A~~~~~~al~  107 (164)
T 3sz7_A           89 RFDMADYKGAKEAYEKGIE  107 (164)
T ss_dssp             HHHTTCHHHHHHHHHHHHH
T ss_pred             HHHccCHHHHHHHHHHHHH
Confidence            6666666666666665544

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=97.81  E-value=0.0004  Score=57.23  Aligned_cols=93  Identities=10%  Similarity=0.078  Sum_probs=39.4

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006615          139 NFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLV  218 (638)
Q Consensus       139 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~  218 (638)
                      .+..+...+.+.|++++|...|++....+ +.+...|..+..++...|++++|...|++..+... -+...+..+...|.
T Consensus        11 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~   88 (137)
T 3q49_B           11 ELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQCQL   88 (137)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHH
Confidence            34444444444444444444444444432 22334444444444444444444444444444211 12333444444444


Q ss_pred             HcCCHHHHHHHHHhc
Q 006615          219 NLGKLDSALEVFSAL  233 (638)
Q Consensus       219 ~~g~~~~A~~~~~~m  233 (638)
                      ..|++++|.+.|++.
T Consensus        89 ~~~~~~~A~~~~~~a  103 (137)
T 3q49_B           89 EMESYDEAIANLQRA  103 (137)
T ss_dssp             HTTCHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHH
Confidence            444444444444433

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.81  E-value=0.00068  Score=56.57  Aligned_cols=92  Identities=13%  Similarity=0.018  Sum_probs=38.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC----HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006615          140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLS----TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIE  215 (638)
Q Consensus       140 ~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~  215 (638)
                      +..+...+.+.|++++|...|++..+..  |+    ...|..+..+|.+.|++++|.+.|++..+.. +.+...+..+..
T Consensus        31 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~  107 (148)
T 2dba_A           31 LRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRRSQ  107 (148)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHHHH
Confidence            3334444444444444444444444322  22    3334444444444444444444444444321 112333444444


Q ss_pred             HHHHcCCHHHHHHHHHhcc
Q 006615          216 HLVNLGKLDSALEVFSALP  234 (638)
Q Consensus       216 ~~~~~g~~~~A~~~~~~m~  234 (638)
                      .+...|++++|.+.|++..
T Consensus       108 ~~~~~~~~~~A~~~~~~al  126 (148)
T 2dba_A          108 ALEKLGRLDQAVLDLQRCV  126 (148)
T ss_dssp             HHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHH
Confidence            4444444444444444433

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=97.80  E-value=0.00014  Score=61.76  Aligned_cols=138  Identities=9%  Similarity=-0.108  Sum_probs=102.1

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCc-chhH
Q 006615          406 VYALEKMLTILARHGHVELVDRLIAKLRSDGMR-LP----FSTIRLIIDFYGISKKADAALKAFHDDRTLCGPIS-KFKL  479 (638)
Q Consensus       406 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~  479 (638)
                      ..++..+...+...|++++|...+++....... .+    ..++..+...|...|++++|...+++..+...... .+..
T Consensus         9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~   88 (164)
T 3ro3_A            9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE   88 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence            345677788888999999999999887643211 11    14677788889999999999999998765432221 2222


Q ss_pred             HHHHHHHHHHHHccCChHHHHHHHHHHHhC----CCCc-chhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006615          480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFS----GIVP-DVQTFSGLMYHFALQGDEKIVQKLFSMVRQ  543 (638)
Q Consensus       480 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~li~~~~~~g~~~~a~~l~~~m~~  543 (638)
                      ...+..+...+...|++++|.+.+++..+.    +..+ ...++..+...+...|++++|.+.+++..+
T Consensus        89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  157 (164)
T 3ro3_A           89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE  157 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            467888889999999999999999987652    2111 245677888899999999999999988765

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=97.80  E-value=0.00024  Score=57.84  Aligned_cols=102  Identities=8%  Similarity=-0.028  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCC--cchhHHHHHH
Q 006615          407 YALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPI--SKFKLMLLYS  484 (638)
Q Consensus       407 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~  484 (638)
                      ..+..+...+...|++++|...|++...... .+...+..+...|...|++++|...++......+..  ..+....+|.
T Consensus         5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (131)
T 1elr_A            5 LKEKELGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence            4456667777778888888888887776542 255666677777777777777777777765542110  0000135666


Q ss_pred             HHHHHHHccCChHHHHHHHHHHHhC
Q 006615          485 SLLRTLTKCKRDFDAINVLEEMIFS  509 (638)
Q Consensus       485 ~li~~~~~~g~~~~A~~l~~~m~~~  509 (638)
                      .+...+.+.|++++|.+.|++..+.
T Consensus        84 ~la~~~~~~~~~~~A~~~~~~~~~~  108 (131)
T 1elr_A           84 RIGNSYFKEEKYKDAIHFYNKSLAE  108 (131)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHh
Confidence            6677777777777777777777664

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=97.79  E-value=0.00039  Score=57.31  Aligned_cols=100  Identities=16%  Similarity=0.072  Sum_probs=81.3

Q ss_pred             CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHH
Q 006615          170 LSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILV  249 (638)
Q Consensus       170 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li  249 (638)
                      .+...|..+...+...|++++|...|++..+... .+...|..+...+...|++++|...|++..+.. +.+...|..+.
T Consensus         7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~   84 (137)
T 3q49_B            7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG   84 (137)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence            4577888888899999999999999999887532 257788888888899999999999998887643 23567888888


Q ss_pred             HHHHccCCHHHHHHHHHHHHhC
Q 006615          250 EGFVGVERFDEAKSLLNEMRDD  271 (638)
Q Consensus       250 ~~~~~~g~~~~A~~l~~~m~~~  271 (638)
                      .+|...|++++|...|++....
T Consensus        85 ~~~~~~~~~~~A~~~~~~a~~~  106 (137)
T 3q49_B           85 QCQLEMESYDEAIANLQRAYSL  106 (137)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHHH
Confidence            8999999999999998887553

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=97.75  E-value=0.00039  Score=59.66  Aligned_cols=101  Identities=11%  Similarity=0.065  Sum_probs=87.2

Q ss_pred             CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHH
Q 006615          171 STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE  250 (638)
Q Consensus       171 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~  250 (638)
                      +...|..+...+.+.|++++|.+.|++..+... -+...|..+...|.+.|++++|.+.|++..+.. ..+...|..+..
T Consensus        10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~   87 (164)
T 3sz7_A           10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAP-ANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL   87 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            466788889999999999999999999998532 278889999999999999999999999988753 235788999999


Q ss_pred             HHHccCCHHHHHHHHHHHHhCCC
Q 006615          251 GFVGVERFDEAKSLLNEMRDDGK  273 (638)
Q Consensus       251 ~~~~~g~~~~A~~l~~~m~~~g~  273 (638)
                      +|...|++++|...|++..+...
T Consensus        88 ~~~~~g~~~~A~~~~~~al~~~p  110 (164)
T 3sz7_A           88 ARFDMADYKGAKEAYEKGIEAEG  110 (164)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHS
T ss_pred             HHHHccCHHHHHHHHHHHHHhCC
Confidence            99999999999999999976543

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=97.75  E-value=0.00036  Score=62.04  Aligned_cols=88  Identities=10%  Similarity=0.009  Sum_probs=42.1

Q ss_pred             HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHH
Q 006615          173 ESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGF  252 (638)
Q Consensus       173 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~  252 (638)
                      .+|..+..+|.+.|++++|...+++..+.. +.+...+..+..+|...|++++|.+.|++..+.. +-+...+..+...+
T Consensus        89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~  166 (198)
T 2fbn_A           89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCV  166 (198)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHH
Confidence            445555555555555555555555555531 1234455555555555555555555555544321 11334444444444


Q ss_pred             HccCCHHHHH
Q 006615          253 VGVERFDEAK  262 (638)
Q Consensus       253 ~~~g~~~~A~  262 (638)
                      ...++.+++.
T Consensus       167 ~~~~~~~~~~  176 (198)
T 2fbn_A          167 NKLKEARKKD  176 (198)
T ss_dssp             HHHHHHHC--
T ss_pred             HHHHHHHHHH
Confidence            4444444433

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.74  E-value=0.00049  Score=57.47  Aligned_cols=100  Identities=15%  Similarity=-0.014  Sum_probs=85.9

Q ss_pred             CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHH
Q 006615          170 LSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPN----SRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQY  245 (638)
Q Consensus       170 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~  245 (638)
                      .+...+..+...+.+.|++++|.+.|++..+.  .|+    ...+..+...|...|++++|.+.+++..+.. ..+...|
T Consensus        26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~  102 (148)
T 2dba_A           26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL  102 (148)
T ss_dssp             CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence            45778888999999999999999999999874  566    6788888889999999999999999887642 2357788


Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHhCC
Q 006615          246 LILVEGFVGVERFDEAKSLLNEMRDDG  272 (638)
Q Consensus       246 ~~li~~~~~~g~~~~A~~l~~~m~~~g  272 (638)
                      ..+..++...|++++|...|++.....
T Consensus       103 ~~~a~~~~~~~~~~~A~~~~~~al~~~  129 (148)
T 2dba_A          103 YRRSQALEKLGRLDQAVLDLQRCVSLE  129 (148)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence            889999999999999999999987753

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=97.74  E-value=0.00068  Score=60.26  Aligned_cols=128  Identities=11%  Similarity=-0.029  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCc---------------hHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 006615          104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNV---------------SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAK  168 (638)
Q Consensus       104 ~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~---------------~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~  168 (638)
                      .+..+...+...|++++|...|++..+......               ...+..+..+|.+.|++++|...+++..+.. 
T Consensus        40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-  118 (198)
T 2fbn_A           40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-  118 (198)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-
Confidence            455566666777777777777777665321111               2567788889999999999999999988874 


Q ss_pred             CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHH-HHHHhcc
Q 006615          169 LLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIP-NSRTYTVMIEHLVNLGKLDSAL-EVFSALP  234 (638)
Q Consensus       169 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~-~~~~~m~  234 (638)
                      +.+..+|..+..+|...|++++|.+.|++..+.  .| +...+..+...+...++.+++. ..|..|.
T Consensus       119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f  184 (198)
T 2fbn_A          119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYELCVNKLKEARKKDKLTFGGMF  184 (198)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHC----------
T ss_pred             cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            456788888999999999999999999998875  34 5667777777777777766665 4444443

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=97.71  E-value=0.00023  Score=60.45  Aligned_cols=131  Identities=12%  Similarity=0.093  Sum_probs=75.8

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CC----HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----HH
Q 006615          139 NFMNLMQWYSTSGDLELVLSTWNEYRQRAKL-LS----TESYNIVMSVYAKTGKNFEAVETFRQVIDEGA-IPN----SR  208 (638)
Q Consensus       139 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~  208 (638)
                      ++..+...|...|++++|...+++..+.... ++    ..++..+...+...|++++|.+.+++..+..- .++    ..
T Consensus        11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~   90 (164)
T 3ro3_A           11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ   90 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence            4556666666777777777777665543100 01    13566666677777777777777776654210 011    33


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhcccC----CCcc-CHhHHHHHHHHHHccCCHHHHHHHHHHHH
Q 006615          209 TYTVMIEHLVNLGKLDSALEVFSALPLM----RIKR-TSKQYLILVEGFVGVERFDEAKSLLNEMR  269 (638)
Q Consensus       209 ty~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~  269 (638)
                      ++..+...+...|++++|.+.+++..+.    +..+ ...++..+...+...|++++|.+.+++..
T Consensus        91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  156 (164)
T 3ro3_A           91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL  156 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            4555666666777777777766655431    1111 13445666667777777777777776654

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=97.69  E-value=0.00041  Score=55.97  Aligned_cols=91  Identities=13%  Similarity=0.011  Sum_probs=49.9

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHc
Q 006615          142 NLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIP-NSRTYTVMIEHLVNL  220 (638)
Q Consensus       142 ~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~ty~~li~~~~~~  220 (638)
                      .+...+.+.|++++|...|++..+.. +.+...|..+..++.+.|++++|+..|++..+.  .| +...+..+...+.+.
T Consensus        22 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~la~~~~~~   98 (121)
T 1hxi_A           22 EEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTNE   98 (121)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc
Confidence            34445555566666666666555543 234555555555566666666666666655553  22 344555555555555


Q ss_pred             CCHHHHHHHHHhccc
Q 006615          221 GKLDSALEVFSALPL  235 (638)
Q Consensus       221 g~~~~A~~~~~~m~~  235 (638)
                      |++++|.+.|++..+
T Consensus        99 g~~~~A~~~~~~al~  113 (121)
T 1hxi_A           99 HNANAALASLRAWLL  113 (121)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHH
Confidence            666666555555443

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=97.69  E-value=0.013  Score=56.03  Aligned_cols=222  Identities=9%  Similarity=0.027  Sum_probs=155.4

Q ss_pred             HHHHcCCChh-HHHHHHHHHHcCCCCCCCh-hHHHHHHHHHHhcCC----------hHHHHHHHHHHHhCCCCCchHhHH
Q 006615           74 HALRSAPNAD-SALSIMEALKSNPNFSHNQ-STLHALATVLAKSQR----------NHELKTLIGDISSSKFLNVSVNFM  141 (638)
Q Consensus        74 ~~l~~~~~~~-~Al~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~----------~~~a~~l~~~~~~~~~~~~~~~~~  141 (638)
                      ....+.|.+. +|+.+++.+....   |+. .+|+.=-.++...+.          ++++..+++.+.... +.+..+|+
T Consensus        37 ~~~~~~~e~s~eaL~~t~~~L~~n---P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~  112 (331)
T 3dss_A           37 FQKRQAGELDESVLELTSQILGAN---PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWH  112 (331)
T ss_dssp             HHHHHTTCCSHHHHHHHHHHHTTC---TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHHC---chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHH
Confidence            3344556655 7999999999653   433 334443333332222          577888888887653 45667788


Q ss_pred             HHHHHHHhcC--CHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006615          142 NLMQWYSTSG--DLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGK-NFEAVETFRQVIDEGAIPNSRTYTVMIEHLV  218 (638)
Q Consensus       142 ~ll~~~~~~g--~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~  218 (638)
                      .-.-.+.+.|  .+++++.+++.+.+.+ +-|..+|+.-.-++...|. ++++++.++++.+..+. |...|+-....+.
T Consensus       113 hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~  190 (331)
T 3dss_A          113 HRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLP  190 (331)
T ss_dssp             HHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHH
T ss_pred             HHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHH
Confidence            7777777777  4899999999999986 5678899988888888888 59999999999987544 7778877666655


Q ss_pred             Hc--------------CCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHcc-----------CCHHHHHHHHHHHHhCCC
Q 006615          219 NL--------------GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGV-----------ERFDEAKSLLNEMRDDGK  273 (638)
Q Consensus       219 ~~--------------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-----------g~~~~A~~l~~~m~~~g~  273 (638)
                      +.              +.++++.+.+....... +-|...|+-+-..+.+.           +.++++++.++++.+.  
T Consensus       191 ~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~--  267 (331)
T 3dss_A          191 QLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL--  267 (331)
T ss_dssp             HHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH--
T ss_pred             HhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh--
Confidence            54              45788888888877643 33777887666555554           4578999999999864  


Q ss_pred             CCCHHHH--HHH---HHHHHcCChHHHHHHHHHhCc
Q 006615          274 FPGRAMR--VAL---ERMQEMGFIQGANEFLREMLP  304 (638)
Q Consensus       274 ~p~~~~~--~ll---~~~~~~g~~~~a~~~~~~~~~  304 (638)
                      .|+..+.  +++   ......|..+++...+.++.+
T Consensus       268 ~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~  303 (331)
T 3dss_A          268 EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA  303 (331)
T ss_dssp             CTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred             CcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence            4666543  221   222345777788888887753

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=97.65  E-value=0.0003  Score=56.82  Aligned_cols=94  Identities=12%  Similarity=0.002  Sum_probs=58.6

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHH
Q 006615          409 LEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLR  488 (638)
Q Consensus       409 ~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~  488 (638)
                      +..+...+.+.|++++|...|++....... +...+..+..++...|++++|...|++..+.     .|+....|..+..
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-----~P~~~~~~~~la~   93 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARML-----DPKDIAVHAALAV   93 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHH
Confidence            334555667777888887777777765433 4555566666666666666666666665554     3333355666666


Q ss_pred             HHHccCChHHHHHHHHHHHh
Q 006615          489 TLTKCKRDFDAINVLEEMIF  508 (638)
Q Consensus       489 ~~~~~g~~~~A~~l~~~m~~  508 (638)
                      .|.+.|++++|++.|++..+
T Consensus        94 ~~~~~g~~~~A~~~~~~al~  113 (121)
T 1hxi_A           94 SHTNEHNANAALASLRAWLL  113 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHcCCHHHHHHHHHHHHH
Confidence            66666666666666666654

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=97.56  E-value=0.032  Score=53.35  Aligned_cols=82  Identities=12%  Similarity=-0.056  Sum_probs=51.1

Q ss_pred             CCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHcc-----------CChHHHHHHHHHHHhCCCCcchhhHHHH--
Q 006615          455 KKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKC-----------KRDFDAINVLEEMIFSGIVPDVQTFSGL--  521 (638)
Q Consensus       455 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----------g~~~~A~~l~~~m~~~g~~p~~~t~~~l--  521 (638)
                      +.++++++.++.....     .|++..+|+-+-..+.+.           +.++++++.++++.+.  .||. .|+.+  
T Consensus       207 ~~~~eEle~~~~ai~~-----~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~--~pd~-~w~l~~~  278 (331)
T 3dss_A          207 NVLLKELELVQNAFFT-----DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL--EPEN-KWCLLTI  278 (331)
T ss_dssp             HHHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH--CTTC-HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh--Cccc-chHHHHH
Confidence            3466677777666543     444456676555555444           4578899999999875  5664 34322  


Q ss_pred             ---HHHHHccCCHHHHHHHHHHHHhC
Q 006615          522 ---MYHFALQGDEKIVQKLFSMVRQN  544 (638)
Q Consensus       522 ---i~~~~~~g~~~~a~~l~~~m~~~  544 (638)
                         +.+....|..+++...+.++++.
T Consensus       279 ~~~~~~~~~~~~~~~~~~~l~~l~~~  304 (331)
T 3dss_A          279 ILLMRALDPLLYEKETLQYFSTLKAV  304 (331)
T ss_dssp             HHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHhhcccccHHHHHHHHHHHHHh
Confidence               22223456777888888888763

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.50  E-value=0.00025  Score=56.83  Aligned_cols=84  Identities=11%  Similarity=0.029  Sum_probs=43.6

Q ss_pred             CChHHHHHHHHHHHhCC--CCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHH
Q 006615          116 QRNHELKTLIGDISSSK--FLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVE  193 (638)
Q Consensus       116 ~~~~~a~~l~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~  193 (638)
                      |++++|...|++..+.+  -+.+...+..+...|.+.|++++|...|++..+.+ +-+...+..+..++.+.|++++|.+
T Consensus         4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~   82 (117)
T 3k9i_A            4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGVE   82 (117)
T ss_dssp             ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHHH
Confidence            44555555555555432  12233445555555666666666666666655543 2335555555566666666666666


Q ss_pred             HHHHHHH
Q 006615          194 TFRQVID  200 (638)
Q Consensus       194 ~~~~m~~  200 (638)
                      .|++..+
T Consensus        83 ~~~~al~   89 (117)
T 3k9i_A           83 LLLKIIA   89 (117)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6665554

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.50  E-value=0.001  Score=67.90  Aligned_cols=134  Identities=7%  Similarity=-0.068  Sum_probs=101.6

Q ss_pred             HHcccCCHHHHHHHHHhchhccCC---CcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHh-----CC-CCcc-hhhHH
Q 006615          450 FYGISKKADAALKAFHDDRTLCGP---ISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIF-----SG-IVPD-VQTFS  519 (638)
Q Consensus       450 ~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g-~~p~-~~t~~  519 (638)
                      .+...|++++|..++++..+....   ...|+...+++.|...|...|++++|+.++++..+     .| -.|+ ..+++
T Consensus       318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~  397 (490)
T 3n71_A          318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM  397 (490)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            345678888888888776544322   34566778999999999999999999999998765     23 1233 45799


Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHhC---CCCCCHhhHHHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHhccCcHHHHHHH
Q 006615          520 GLMYHFALQGDEKIVQKLFSMVRQN---GVEPDAYMFKVLIQAYCKYLSNSNLMPD-AATKELLKKSLWKEGRRKEAAAV  595 (638)
Q Consensus       520 ~li~~~~~~g~~~~a~~l~~~m~~~---~~~p~~~~~~~li~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~  595 (638)
                      .|...|...|++++|..++++..+-   -+-||.                    |+ ..+.+.|-.++...|.+++|+.+
T Consensus       398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~H--------------------p~~~~~~~~l~~~~~e~~~~~~ae~~  457 (490)
T 3n71_A          398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSH--------------------PITKDLEAMRMQTEMELRMFRQNEFM  457 (490)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS--------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC--------------------hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999887642   122332                    22 34557777888899999999999


Q ss_pred             HHHHHHcc
Q 006615          596 EERCEKIN  603 (638)
Q Consensus       596 ~~~~~~~~  603 (638)
                      ++++.+.-
T Consensus       458 ~~~~~~~~  465 (490)
T 3n71_A          458 YHKMREAA  465 (490)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998853

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=97.49  E-value=0.00026  Score=72.75  Aligned_cols=118  Identities=15%  Similarity=0.104  Sum_probs=59.5

Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 006615          146 WYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDS  225 (638)
Q Consensus       146 ~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~  225 (638)
                      .+.+.|++++|.+.|++..+.. +.+..+|+.+..+|.+.|++++|.+.|++..+... -+..+|..+..+|.+.|++++
T Consensus        15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g~~~e   92 (477)
T 1wao_1           15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGKFRA   92 (477)
T ss_dssp             STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHH
Confidence            3445566666666666655543 23355566666666666666666666666655321 134555555555666666666


Q ss_pred             HHHHHHhcccCCCccCHhHHHHHHHH--HHccCCHHHHHHHHH
Q 006615          226 ALEVFSALPLMRIKRTSKQYLILVEG--FVGVERFDEAKSLLN  266 (638)
Q Consensus       226 A~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~A~~l~~  266 (638)
                      |.+.|++..+.. .-+...+..+..+  +.+.|++++|.+.++
T Consensus        93 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           93 ALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            666665554421 1122333333333  455555555555555

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=97.49  E-value=0.0016  Score=52.75  Aligned_cols=87  Identities=11%  Similarity=0.025  Sum_probs=36.5

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCCCH---HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHH
Q 006615          145 QWYSTSGDLELVLSTWNEYRQRAKLLST---ESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPN----SRTYTVMIEHL  217 (638)
Q Consensus       145 ~~~~~~g~~~~A~~l~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~ty~~li~~~  217 (638)
                      ..+.+.|++++|...|++..+.. +.+.   ..+..+..++.+.|++++|...|++..+..  |+    ...+..+...+
T Consensus        10 ~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la~~~   86 (129)
T 2xev_A           10 FDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLGLSQ   86 (129)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHH
Confidence            33444444444444444444432 1111   234444444444444444444444444421  21    23333344444


Q ss_pred             HHcCCHHHHHHHHHhcc
Q 006615          218 VNLGKLDSALEVFSALP  234 (638)
Q Consensus       218 ~~~g~~~~A~~~~~~m~  234 (638)
                      .+.|++++|.+.|++..
T Consensus        87 ~~~g~~~~A~~~~~~~~  103 (129)
T 2xev_A           87 YGEGKNTEAQQTLQQVA  103 (129)
T ss_dssp             HHTTCHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHH
Confidence            44444444444444443

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.45  E-value=0.00023  Score=57.00  Aligned_cols=85  Identities=13%  Similarity=0.083  Sum_probs=54.6

Q ss_pred             cCCHHHHHHHHHHHHhcC--CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 006615          150 SGDLELVLSTWNEYRQRA--KLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSAL  227 (638)
Q Consensus       150 ~g~~~~A~~l~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~  227 (638)
                      .|++++|...|++..+.+  -+.+...|..+..+|.+.|++++|.+.|++..+.... +...+..+..++.+.|++++|.
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence            466777777777776653  1234556677777777777777777777777765322 4666666777777777777777


Q ss_pred             HHHHhccc
Q 006615          228 EVFSALPL  235 (638)
Q Consensus       228 ~~~~~m~~  235 (638)
                      +.|++...
T Consensus        82 ~~~~~al~   89 (117)
T 3k9i_A           82 ELLLKIIA   89 (117)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77776654

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.41  E-value=0.0026  Score=54.16  Aligned_cols=71  Identities=11%  Similarity=0.043  Sum_probs=53.9

Q ss_pred             hhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH
Q 006615          477 FKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDA  550 (638)
Q Consensus       477 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~  550 (638)
                      |.....|..+..+|.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|...|+...+.  .|+.
T Consensus        60 ~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~  130 (162)
T 3rkv_A           60 RKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAA  130 (162)
T ss_dssp             HTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGG
T ss_pred             HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCC
Confidence            3445678888888888888888888888887753 225667888888888888888888888888764  4553

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=97.41  E-value=0.0019  Score=65.99  Aligned_cols=121  Identities=12%  Similarity=0.069  Sum_probs=66.7

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---------------HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 006615          139 NFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLS---------------TESYNIVMSVYAKTGKNFEAVETFRQVIDEGA  203 (638)
Q Consensus       139 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~  203 (638)
                      .+..+...|.+.|++++|...|++..+.. +.+               ..+|+.+..+|.+.|++++|+..|++..+...
T Consensus       270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p  348 (457)
T 1kt0_A          270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS  348 (457)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence            45556666677777777777777666542 111               35555666666666666666666666655321


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHH
Q 006615          204 IPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK  262 (638)
Q Consensus       204 ~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~  262 (638)
                       -+...|..+..+|...|++++|...|++..+.. .-+...+..+..++.+.++.+++.
T Consensus       349 -~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~  405 (457)
T 1kt0_A          349 -ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERD  405 (457)
T ss_dssp             -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred             -ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence             145555555566666666666666666555431 113344555555555555555444

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=97.41  E-value=0.0021  Score=65.55  Aligned_cols=129  Identities=12%  Similarity=0.049  Sum_probs=102.2

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCc--------------hHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 006615          103 STLHALATVLAKSQRNHELKTLIGDISSSKFLNV--------------SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAK  168 (638)
Q Consensus       103 ~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~--------------~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~  168 (638)
                      ..+......+.+.|++++|...|++..+......              ...|..+..+|.+.|++++|+..|++..+.+ 
T Consensus       269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-  347 (457)
T 1kt0_A          269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-  347 (457)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-
Confidence            3577777888889999999999998876321111              4678889999999999999999999999875 


Q ss_pred             CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHH-HHHhcc
Q 006615          169 LLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIP-NSRTYTVMIEHLVNLGKLDSALE-VFSALP  234 (638)
Q Consensus       169 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~-~~~~m~  234 (638)
                      +.+..+|..+..+|.+.|++++|...|++..+.  .| +...+..+...+.+.++.+++.+ ++..|.
T Consensus       348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f  413 (457)
T 1kt0_A          348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEHNERDRRIYANMF  413 (457)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457889999999999999999999999999884  45 56678888888888888887763 445443

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=97.40  E-value=0.0052  Score=49.67  Aligned_cols=92  Identities=17%  Similarity=0.089  Sum_probs=55.9

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhCCCCCch---HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---HHhHHHHHHH
Q 006615          108 LATVLAKSQRNHELKTLIGDISSSKFLNVS---VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLS---TESYNIVMSV  181 (638)
Q Consensus       108 li~~~~~~~~~~~a~~l~~~~~~~~~~~~~---~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~---~~~~~~li~~  181 (638)
                      +...+...|++++|...++...+... .+.   ..+..+...+.+.|++++|...|++..... +.+   ..++..+..+
T Consensus         8 ~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~   85 (129)
T 2xev_A            8 VAFDALKNGKYDDASQLFLSFLELYP-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLS   85 (129)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCS-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHH
Confidence            44455566666666666666655321 112   345556666677777777777777766653 122   4556666667


Q ss_pred             HHhcCChHHHHHHHHHHHHc
Q 006615          182 YAKTGKNFEAVETFRQVIDE  201 (638)
Q Consensus       182 ~~~~g~~~~A~~~~~~m~~~  201 (638)
                      +.+.|++++|...|++..+.
T Consensus        86 ~~~~g~~~~A~~~~~~~~~~  105 (129)
T 2xev_A           86 QYGEGKNTEAQQTLQQVATQ  105 (129)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHH
Confidence            77777777777777777664

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.40  E-value=0.0016  Score=66.53  Aligned_cols=130  Identities=8%  Similarity=-0.114  Sum_probs=100.9

Q ss_pred             HHHHhcCChHHHHHHHHHHHHc-----CC-CC-CHHHHHHHHHHHcccCCHHHHHHHHHhchhc---cCCCcchhHHHHH
Q 006615          414 TILARHGHVELVDRLIAKLRSD-----GM-RL-PFSTIRLIIDFYGISKKADAALKAFHDDRTL---CGPISKFKLMLLY  483 (638)
Q Consensus       414 ~~~~~~g~~~~a~~l~~~m~~~-----g~-~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~~~  483 (638)
                      ..+...|++++|+.++++..+.     |. .| ...+++.|..+|...|++++|..++++..+.   .-+...|++..++
T Consensus       317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l  396 (490)
T 3n71_A          317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV  396 (490)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence            3456789999999999887642     21 12 2367889999999999999999999986543   2334578888999


Q ss_pred             HHHHHHHHccCChHHHHHHHHHHHh-----CCC-Ccch-hhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006615          484 SSLLRTLTKCKRDFDAINVLEEMIF-----SGI-VPDV-QTFSGLMYHFALQGDEKIVQKLFSMVRQ  543 (638)
Q Consensus       484 ~~li~~~~~~g~~~~A~~l~~~m~~-----~g~-~p~~-~t~~~li~~~~~~g~~~~a~~l~~~m~~  543 (638)
                      +.|...|...|++++|+.++++..+     .|- -|++ .+.+.+-.++...|.+++|..++..+.+
T Consensus       397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~  463 (490)
T 3n71_A          397 MRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE  463 (490)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998754     332 2333 3456667788899999999999998875

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=97.36  E-value=0.00054  Score=70.35  Aligned_cols=124  Identities=14%  Similarity=0.023  Sum_probs=94.9

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHH
Q 006615          175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIP-NSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFV  253 (638)
Q Consensus       175 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~  253 (638)
                      |..+...+.+.|++++|.+.|++..+.  .| +..+|..+..+|.+.|++++|.+.+++..+.. ..+...|..+..+|.
T Consensus         9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~   85 (477)
T 1wao_1            9 LKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM   85 (477)
T ss_dssp             SSSSSSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence            444445567889999999999999985  34 58899999999999999999999999988753 236788999999999


Q ss_pred             ccCCHHHHHHHHHHHHhCCCCCCHHHHHH--HHHHHHcCChHHHHHHHHH
Q 006615          254 GVERFDEAKSLLNEMRDDGKFPGRAMRVA--LERMQEMGFIQGANEFLRE  301 (638)
Q Consensus       254 ~~g~~~~A~~l~~~m~~~g~~p~~~~~~l--l~~~~~~g~~~~a~~~~~~  301 (638)
                      +.|++++|.+.|++..+...........+  +..+.+.|++++|.+.+++
T Consensus        86 ~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~  135 (477)
T 1wao_1           86 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH  135 (477)
T ss_dssp             HHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            99999999999999987643333333333  3447888999999999874

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.36  E-value=0.0032  Score=62.14  Aligned_cols=94  Identities=11%  Similarity=-0.038  Sum_probs=70.5

Q ss_pred             chhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHH
Q 006615          476 KFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKV  555 (638)
Q Consensus       476 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~  555 (638)
                      .|....+|..+..+|.+.|++++|++.+++..+.. +-+...|..+..+|...|++++|.+.|++..+.  .|+      
T Consensus       269 ~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~------  339 (370)
T 1ihg_A          269 QPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APE------  339 (370)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT------
T ss_pred             HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCC------
Confidence            44445788889999999999999999999998853 225677888888999999999999999988874  232      


Q ss_pred             HHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 006615          556 LIQAYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAA  594 (638)
Q Consensus       556 li~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~  594 (638)
                                      +...+..+..++.+.|+.+++.+
T Consensus       340 ----------------~~~~~~~l~~~~~~~~~~~~a~k  362 (370)
T 1ihg_A          340 ----------------DKAIQAELLKVKQKIKAQKDKEK  362 (370)
T ss_dssp             ----------------CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------------CHHHHHHHHHHHHHHHHHHHHHH
Confidence                            34455556666666666666554

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.33  E-value=0.00065  Score=66.28  Aligned_cols=129  Identities=11%  Similarity=-0.070  Sum_probs=77.1

Q ss_pred             HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchh------------------hHHHHHHHHHccCCHHHHHHHHHHH
Q 006615          480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQ------------------TFSGLMYHFALQGDEKIVQKLFSMV  541 (638)
Q Consensus       480 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~------------------t~~~li~~~~~~g~~~~a~~l~~~m  541 (638)
                      +..|..+...+.+.|++++|...|++..+.  .|+..                  .|..+..+|.+.|++++|...+++.
T Consensus       179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a  256 (338)
T 2if4_A          179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV  256 (338)
T ss_dssp             HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            455666777777778888888888776653  34433                  7888899999999999999999998


Q ss_pred             HhCCCCCCHhhHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHccCCCCccccccee--eeec
Q 006615          542 RQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLALRGHIW--AVSS  619 (638)
Q Consensus       542 ~~~~~~p~~~~~~~li~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~w--~~~~  619 (638)
                      .+..  |+                      +...|..+..+|...|++++|.+.+++..+..+..+........  ....
T Consensus       257 l~~~--p~----------------------~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~  312 (338)
T 2if4_A          257 LTEE--EK----------------------NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEK  312 (338)
T ss_dssp             HHHC--TT----------------------CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------
T ss_pred             HHhC--CC----------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence            8742  22                      56778889999999999999999999988876533322222211  1234


Q ss_pred             cccchhccccccccc
Q 006615          620 ADLTRVHSIYRNSIT  634 (638)
Q Consensus       620 ~~~~~~~~~~~~~~~  634 (638)
                      ....++...|++++.
T Consensus       313 ~~~~~a~~~~~~~l~  327 (338)
T 2if4_A          313 ALYQKQKEMYKGIFK  327 (338)
T ss_dssp             ---------------
T ss_pred             HHHHHHHHHHHHhhC
Confidence            455666777777764

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.33  E-value=0.0022  Score=53.64  Aligned_cols=64  Identities=11%  Similarity=0.062  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHHccCChHHHHHHHHHHHhC-----CCCcc-hhhH----HHHHHHHHccCCHHHHHHHHHHHHh
Q 006615          480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFS-----GIVPD-VQTF----SGLMYHFALQGDEKIVQKLFSMVRQ  543 (638)
Q Consensus       480 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g~~p~-~~t~----~~li~~~~~~g~~~~a~~l~~~m~~  543 (638)
                      ...|+.+..++.+.|++++|+..+++.++.     .+.|+ ...|    ...-.++...|++++|+..|++..+
T Consensus        57 a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle  130 (159)
T 2hr2_A           57 AFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  130 (159)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence            457888888888889998888888888773     12564 4567    7888888899999999999988775

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.32  E-value=0.00041  Score=54.64  Aligned_cols=95  Identities=9%  Similarity=0.005  Sum_probs=61.6

Q ss_pred             chHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-------HH
Q 006615          136 VSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPN-------SR  208 (638)
Q Consensus       136 ~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-------~~  208 (638)
                      +...+..+...+.+.|++++|...|++..+.. +.+...|..+..++.+.|++++|.+.|++..+.  .|+       ..
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~   79 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSK   79 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHH
Confidence            34456667777777788888888887777654 345677777777777888888888888777763  344       33


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhc
Q 006615          209 TYTVMIEHLVNLGKLDSALEVFSAL  233 (638)
Q Consensus       209 ty~~li~~~~~~g~~~~A~~~~~~m  233 (638)
                      .+..+..++...|+.+.|.+.|+++
T Consensus        80 ~~~~~~~~~~~~~~~~~a~~~~~~~  104 (111)
T 2l6j_A           80 LQYRLELAQGAVGSVQIPVVEVDEL  104 (111)
T ss_dssp             HHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred             HHHHHHHHHHHHHhHhhhHhHHHHh
Confidence            4444455555555555554444443

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.29  E-value=0.002  Score=55.00  Aligned_cols=104  Identities=9%  Similarity=-0.136  Sum_probs=81.4

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHc--------CC--------CC-CHHHHHHHHHHHcccCCHHHHHHHHHhch
Q 006615          406 VYALEKMLTILARHGHVELVDRLIAKLRSD--------GM--------RL-PFSTIRLIIDFYGISKKADAALKAFHDDR  468 (638)
Q Consensus       406 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~--------g~--------~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~  468 (638)
                      ...+...-..+.+.|++++|...|.+....        ..        .| +...|..+..+|.+.|++++|...++...
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al   90 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL   90 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            345666777788888988888888887654        10        11 23677888889999999999999999988


Q ss_pred             hccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchh
Q 006615          469 TLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQ  516 (638)
Q Consensus       469 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~  516 (638)
                      +.     .|+...+|..+..+|...|++++|.+.|++..+.  .|+..
T Consensus        91 ~~-----~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~~  131 (162)
T 3rkv_A           91 KR-----EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAAA  131 (162)
T ss_dssp             HH-----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGGH
T ss_pred             hc-----CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCCH
Confidence            75     4555678999999999999999999999998875  56644

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.23  E-value=0.004  Score=61.41  Aligned_cols=89  Identities=10%  Similarity=0.025  Sum_probs=43.7

Q ss_pred             HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHH
Q 006615          172 TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEG  251 (638)
Q Consensus       172 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~  251 (638)
                      ..+|+.+..+|.+.|++++|++.+++..+... -+...|..+..+|.+.|++++|.+.|++..+.. .-+...+..+...
T Consensus       273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~  350 (370)
T 1ihg_A          273 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKV  350 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence            34455555555555555555555555554321 134455555555555555555555555544321 1133444444455


Q ss_pred             HHccCCHHHHH
Q 006615          252 FVGVERFDEAK  262 (638)
Q Consensus       252 ~~~~g~~~~A~  262 (638)
                      +...++.+++.
T Consensus       351 ~~~~~~~~~a~  361 (370)
T 1ihg_A          351 KQKIKAQKDKE  361 (370)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            55555444443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.22  E-value=0.024  Score=59.22  Aligned_cols=172  Identities=6%  Similarity=-0.081  Sum_probs=121.1

Q ss_pred             CChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhc
Q 006615          116 QRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGD----------LELVLSTWNEYRQRAKLLSTESYNIVMSVYAKT  185 (638)
Q Consensus       116 ~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~----------~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~  185 (638)
                      ..-++|...++.+.... +.+...|+.--..+.+.|+          ++++++.++.+.+.+ +-+..+|+.-.-++.+.
T Consensus        43 ~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l  120 (567)
T 1dce_A           43 ELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL  120 (567)
T ss_dssp             CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence            34456677777777643 2334446655555555555          888999999988875 45677888888888888


Q ss_pred             C--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHhcccCCCccCHhHHHHHHHHHHcc-------
Q 006615          186 G--KNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLG-KLDSALEVFSALPLMRIKRTSKQYLILVEGFVGV-------  255 (638)
Q Consensus       186 g--~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-------  255 (638)
                      +  +++++++.++++.+.... |...|+.-...+.+.| .++++.+.++++.+... -|...|+.....+.+.       
T Consensus       121 ~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p-~n~saW~~r~~ll~~l~~~~~~~  198 (567)
T 1dce_A          121 PEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSG  198 (567)
T ss_dssp             SSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCCCSS
T ss_pred             ccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC-CCccHHHHHHHHHHhhccccccc
Confidence            8  679999999999886543 7788887777777888 88899999988887542 3777887777666552       


Q ss_pred             -------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC
Q 006615          256 -------ERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGF  291 (638)
Q Consensus       256 -------g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~  291 (638)
                             +.++++++.+++.......-...++-.-..+.+.++
T Consensus       199 ~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~  241 (567)
T 1dce_A          199 PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEP  241 (567)
T ss_dssp             SCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCC
T ss_pred             ccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCC
Confidence                   557899999998887654444455444444444444

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.22  E-value=0.0013  Score=64.10  Aligned_cols=126  Identities=13%  Similarity=-0.012  Sum_probs=58.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH------------------HhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 006615          140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLST------------------ESYNIVMSVYAKTGKNFEAVETFRQVIDE  201 (638)
Q Consensus       140 ~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~------------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~  201 (638)
                      +..+...+.+.|++++|...|++.....  |+.                  .+|+.+..+|.+.|++++|+..|++..+.
T Consensus       182 ~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  259 (338)
T 2if4_A          182 RKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTE  259 (338)
T ss_dssp             HHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3344455555556666666555554432  222                  26667777777777777777777777764


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCcc-CHhHHHHHHHH-HHccCCHHHHHHHHHHHHh
Q 006615          202 GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKR-TSKQYLILVEG-FVGVERFDEAKSLLNEMRD  270 (638)
Q Consensus       202 g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~-~~~~g~~~~A~~l~~~m~~  270 (638)
                      . +-+...|..+..+|...|++++|.+.|++..+.  .| +...+..|... ....+..+++..+|.+|..
T Consensus       260 ~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~  327 (338)
T 2if4_A          260 E-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQKQKEMYKGIFK  327 (338)
T ss_dssp             C-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------------------
T ss_pred             C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            2 125667777777777777777777777776653  23 33344444433 2234555666666666644

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.20  E-value=0.0036  Score=52.32  Aligned_cols=101  Identities=9%  Similarity=-0.090  Sum_probs=77.1

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC------CH-----HHHHHHHHHHcccCCHHHHHHHHHhchhc--cCCC
Q 006615          408 ALEKMLTILARHGHVELVDRLIAKLRSDGMRL------PF-----STIRLIIDFYGISKKADAALKAFHDDRTL--CGPI  474 (638)
Q Consensus       408 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~------~~-----~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~  474 (638)
                      .+...-..+.+.|++++|.+.|++..+.....      +.     ..|..+-.++.+.|++++|+..++...+.  ....
T Consensus        13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e   92 (159)
T 2hr2_A           13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE   92 (159)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence            34556667778888999988888877654331      22     37888888899999999999999887753  0001


Q ss_pred             cchhHHHHH----HHHHHHHHccCChHHHHHHHHHHHh
Q 006615          475 SKFKLMLLY----SSLLRTLTKCKRDFDAINVLEEMIF  508 (638)
Q Consensus       475 ~~~~~~~~~----~~li~~~~~~g~~~~A~~l~~~m~~  508 (638)
                      .+|+....|    .....++...|++++|++.|++..+
T Consensus        93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle  130 (159)
T 2hr2_A           93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  130 (159)
T ss_dssp             TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence            145556788    9999999999999999999999876

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=96.95  E-value=0.014  Score=48.01  Aligned_cols=110  Identities=12%  Similarity=0.043  Sum_probs=49.2

Q ss_pred             CHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHH
Q 006615          152 DLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVN----LGKLDSAL  227 (638)
Q Consensus       152 ~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~----~g~~~~A~  227 (638)
                      ++++|...|++..+.| .|  ...  |-..|...+.+++|.+.|++..+.|   +...+..|-..|..    .++.++|.
T Consensus        10 d~~~A~~~~~~aa~~g-~~--~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~   81 (138)
T 1klx_A           10 DLKKAIQYYVKACELN-EM--FGC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA   81 (138)
T ss_dssp             HHHHHHHHHHHHHHTT-CT--THH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             CHHHHHHHHHHHHcCC-CH--hhh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence            3444444444444444 11  111  3333333344444555555444432   33444444444444    44555555


Q ss_pred             HHHHhcccCCCccCHhHHHHHHHHHHc----cCCHHHHHHHHHHHHhCC
Q 006615          228 EVFSALPLMRIKRTSKQYLILVEGFVG----VERFDEAKSLLNEMRDDG  272 (638)
Q Consensus       228 ~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g  272 (638)
                      ++|++..+.|   +...+..|-..|..    .+++++|.+.|++..+.|
T Consensus        82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A           82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence            5555544432   33344444444444    455555555555554443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=96.92  E-value=0.027  Score=58.88  Aligned_cols=180  Identities=11%  Similarity=0.015  Sum_probs=135.7

Q ss_pred             HHHcCCC-hhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCC----------hHHHHHHHHHHHhCCCCCchHhHHHH
Q 006615           75 ALRSAPN-ADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQR----------NHELKTLIGDISSSKFLNVSVNFMNL  143 (638)
Q Consensus        75 ~l~~~~~-~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~l~~~~~~~~~~~~~~~~~~l  143 (638)
                      ++.+.|. .++|++.++.+....  +-+..+|+.--.++...++          ++++...++.+.+.. +.+..+|+.-
T Consensus        37 ~~~~~~~~~eeal~~~~~~l~~n--P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR  113 (567)
T 1dce_A           37 QKRQAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHR  113 (567)
T ss_dssp             HHHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence            3444454 567899999998653  1233456665555555666          899999999998754 4566778888


Q ss_pred             HHHHHhcC--CHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 006615          144 MQWYSTSG--DLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTG-KNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL  220 (638)
Q Consensus       144 l~~~~~~g--~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~  220 (638)
                      .-.+.+.|  +++++++.++++.+.+ +-|..+|+.-..++.+.| .++++++.++++.+..+. |...|+.....+.+.
T Consensus       114 ~w~l~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l  191 (567)
T 1dce_A          114 CWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQL  191 (567)
T ss_dssp             HHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHH
T ss_pred             HHHHHHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhh
Confidence            88888889  7799999999999986 557889999888888888 899999999999986543 788888777766663


Q ss_pred             --------------CCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHH
Q 006615          221 --------------GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDE  260 (638)
Q Consensus       221 --------------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~  260 (638)
                                    +.++++.+.+++..... +-|...|+-+-..+.+.++.++
T Consensus       192 ~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~  244 (567)
T 1dce_A          192 HPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV  244 (567)
T ss_dssp             SCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred             cccccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence                          55788988888877543 2367788888877777776443

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=96.92  E-value=0.019  Score=47.19  Aligned_cols=89  Identities=7%  Similarity=0.023  Sum_probs=41.8

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006615          143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAK----TGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLV  218 (638)
Q Consensus       143 ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~  218 (638)
                      |-..|...+.+++|.+.|++..+.|   +..+++.|-..|..    .+++++|.++|++..+.|   +...+..|-..|.
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~  104 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQY  104 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHH
Confidence            3333434444444555555544443   24444444444444    445555555555554432   3344444444444


Q ss_pred             H----cCCHHHHHHHHHhcccCC
Q 006615          219 N----LGKLDSALEVFSALPLMR  237 (638)
Q Consensus       219 ~----~g~~~~A~~~~~~m~~~g  237 (638)
                      .    .++.++|.++|++..+.|
T Consensus       105 ~G~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A          105 AGKGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             HTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             CCCCCCcCHHHHHHHHHHHHHCC
Confidence            4    455555555555544433

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=96.87  E-value=0.015  Score=43.29  Aligned_cols=63  Identities=19%  Similarity=0.286  Sum_probs=35.9

Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 006615          138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE  201 (638)
Q Consensus       138 ~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  201 (638)
                      ..+..+...+.+.|++++|...|++..... +.+...|..+..++.+.|++++|.+.|++..+.
T Consensus        10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~   72 (91)
T 1na3_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL   72 (91)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            344555555666666666666666655543 234555555556666666666666666665553

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=96.86  E-value=0.00093  Score=52.49  Aligned_cols=63  Identities=22%  Similarity=0.183  Sum_probs=31.9

Q ss_pred             HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc
Q 006615          172 TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPL  235 (638)
Q Consensus       172 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~  235 (638)
                      ...|..+...+.+.|++++|.+.|++..+.. +.+...+..+..++.+.|++++|.+.|++..+
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   66 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR   66 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            3445555555555555555555555555431 11344444455555555555555555555443

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=96.78  E-value=0.0081  Score=47.46  Aligned_cols=77  Identities=6%  Similarity=0.039  Sum_probs=40.2

Q ss_pred             HHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006615          122 KTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVID  200 (638)
Q Consensus       122 ~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  200 (638)
                      ...+++..+.. +.+...+..+...|.+.|++++|...|++....+ +.+...|..+..+|.+.|++++|...|++..+
T Consensus         5 ~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~   81 (115)
T 2kat_A            5 TERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA   81 (115)
T ss_dssp             HHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34444444322 2334445555555555666666666665555543 23345555555556666666666666555544

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=96.64  E-value=0.01  Score=45.54  Aligned_cols=64  Identities=16%  Similarity=0.163  Sum_probs=42.3

Q ss_pred             chHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006615          136 VSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVID  200 (638)
Q Consensus       136 ~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  200 (638)
                      +...+..+...|.+.|++++|...|++..+.+ +.+...|..+..+|.+.|++++|.+.|++..+
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~   69 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE   69 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            44556666677777777777777777766654 33455666677777777777777777766654

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=96.62  E-value=0.014  Score=46.08  Aligned_cols=79  Identities=11%  Similarity=0.032  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcc
Q 006615          155 LVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP  234 (638)
Q Consensus       155 ~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~  234 (638)
                      .|...|++..+.+ +.+...|..+...|.+.|++++|...|++..+... .+...|..+...|...|++++|.+.|++..
T Consensus         3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al   80 (115)
T 2kat_A            3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWESGL   80 (115)
T ss_dssp             CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4566667666653 34567777777788888888888888888776432 246677777777777888888887777665


Q ss_pred             c
Q 006615          235 L  235 (638)
Q Consensus       235 ~  235 (638)
                      +
T Consensus        81 ~   81 (115)
T 2kat_A           81 A   81 (115)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=96.52  E-value=0.0042  Score=51.85  Aligned_cols=99  Identities=9%  Similarity=-0.067  Sum_probs=64.1

Q ss_pred             HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCC----------HHHHHHHHHhchhccCCCcchhHHHHHHHH
Q 006615          417 ARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKK----------ADAALKAFHDDRTLCGPISKFKLMLLYSSL  486 (638)
Q Consensus       417 ~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l  486 (638)
                      .+.+.+++|.+.++...+.... +...|..+-.++...++          +++|+..|++..+.     .|+...+|..+
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l-----dP~~~~A~~~L   86 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI-----DPKKDEAVWCI   86 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-----CTTCHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh-----CcCcHHHHHHH
Confidence            3445566666666666665533 55566655555555544          45788888877765     45555678888


Q ss_pred             HHHHHccC-----------ChHHHHHHHHHHHhCCCCcchhhHHHHHH
Q 006615          487 LRTLTKCK-----------RDFDAINVLEEMIFSGIVPDVQTFSGLMY  523 (638)
Q Consensus       487 i~~~~~~g-----------~~~~A~~l~~~m~~~g~~p~~~t~~~li~  523 (638)
                      ..+|...|           ++++|++.|++..+.  .|+...|...+.
T Consensus        87 G~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~  132 (158)
T 1zu2_A           87 GNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE  132 (158)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred             HHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence            88887764           778888888887774  576665544444

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=96.50  E-value=0.019  Score=42.63  Aligned_cols=80  Identities=16%  Similarity=0.206  Sum_probs=47.4

Q ss_pred             HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHH
Q 006615          172 TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEG  251 (638)
Q Consensus       172 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~  251 (638)
                      ...|..+...+.+.|++++|...|++..+.. +.+..++..+...+.+.|++++|.+.|++..+.. +.+...+..+...
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~   86 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA   86 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence            4456666666777777777777777766642 1245566666666677777777777776665432 1234444444444


Q ss_pred             HH
Q 006615          252 FV  253 (638)
Q Consensus       252 ~~  253 (638)
                      +.
T Consensus        87 ~~   88 (91)
T 1na3_A           87 KQ   88 (91)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.49  E-value=0.13  Score=56.76  Aligned_cols=100  Identities=18%  Similarity=0.171  Sum_probs=46.5

Q ss_pred             HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHH
Q 006615          183 AKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK  262 (638)
Q Consensus       183 ~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~  262 (638)
                      .+.|++++|.++.+.+      .+...|..+...+.+.|+++.|.+.|..+..         |..+...|...|+.+...
T Consensus       663 l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~  727 (814)
T 3mkq_A          663 LKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLV  727 (814)
T ss_dssp             HHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHH
T ss_pred             hhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHH
Confidence            3445555555554322      2445555566666666666666666555542         333444444455554444


Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHh
Q 006615          263 SLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREM  302 (638)
Q Consensus       263 ~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~  302 (638)
                      ++-+.....|..     ......+.+.|++++|.+++.++
T Consensus       728 ~~~~~a~~~~~~-----~~A~~~~~~~g~~~~a~~~~~~~  762 (814)
T 3mkq_A          728 TLAKDAETTGKF-----NLAFNAYWIAGDIQGAKDLLIKS  762 (814)
T ss_dssp             HHHHHHHHTTCH-----HHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHHHHHHHcCch-----HHHHHHHHHcCCHHHHHHHHHHc
Confidence            443333333211     11222334445555555554443

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=96.46  E-value=0.0073  Score=50.35  Aligned_cols=59  Identities=15%  Similarity=0.191  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcC-----------ChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006615          153 LELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTG-----------KNFEAVETFRQVIDEGAIPNSRTYTVMI  214 (638)
Q Consensus       153 ~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g-----------~~~~A~~~~~~m~~~g~~p~~~ty~~li  214 (638)
                      +++|+..|++..+.+ +-+..+|+.+-.+|...|           ++++|.+.|++..+  +.|+...|..-+
T Consensus        62 ~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al  131 (158)
T 1zu2_A           62 IQEAITKFEEALLID-PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSL  131 (158)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence            446666666666654 234556666666666543           66677777766666  345555444333

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=96.41  E-value=0.015  Score=58.34  Aligned_cols=91  Identities=8%  Similarity=-0.060  Sum_probs=70.6

Q ss_pred             ccCCHHHHHHHHHhchhccC---CCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHh-----CC-CCcc-hhhHHHHH
Q 006615          453 ISKKADAALKAFHDDRTLCG---PISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIF-----SG-IVPD-VQTFSGLM  522 (638)
Q Consensus       453 ~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g-~~p~-~~t~~~li  522 (638)
                      ..|++++|..++++..+...   ....|+...+++.|...|...|++++|+.++++..+     .| -.|+ ..+|+.|-
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            45788888888887654322   234566678899999999999999999999998765     23 2344 45799999


Q ss_pred             HHHHccCCHHHHHHHHHHHHh
Q 006615          523 YHFALQGDEKIVQKLFSMVRQ  543 (638)
Q Consensus       523 ~~~~~~g~~~~a~~l~~~m~~  543 (638)
                      ..|...|++++|..++++..+
T Consensus       390 ~~~~~qg~~~eA~~~~~~Al~  410 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKAIA  410 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHH
Confidence            999999999999999987764

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=96.32  E-value=0.014  Score=44.81  Aligned_cols=66  Identities=12%  Similarity=0.018  Sum_probs=44.2

Q ss_pred             hhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006615          477 FKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQ  543 (638)
Q Consensus       477 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~  543 (638)
                      |+....|..+...|.+.|++++|++.|++..+.. +-+...|..+..+|...|++++|.+.|++..+
T Consensus         4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~   69 (100)
T 3ma5_A            4 PEDPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE   69 (100)
T ss_dssp             -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            3334567777777777777777777777776642 11345667777777777777777777776654

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.12  E-value=0.033  Score=55.83  Aligned_cols=96  Identities=9%  Similarity=-0.128  Sum_probs=68.6

Q ss_pred             HHHHcccCCHHHHHHHHHhchhccC---CCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHh-----CC-CCcc-hhh
Q 006615          448 IDFYGISKKADAALKAFHDDRTLCG---PISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIF-----SG-IVPD-VQT  517 (638)
Q Consensus       448 i~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g-~~p~-~~t  517 (638)
                      +..+.+.|++++|..++++..+...   ....|....+++.+...|...|++++|+.++++..+     .| -.|+ ..+
T Consensus       294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~  373 (429)
T 3qwp_A          294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ  373 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence            3344556777777777776654322   233555667888899999999999999998887754     22 2233 456


Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHh
Q 006615          518 FSGLMYHFALQGDEKIVQKLFSMVRQ  543 (638)
Q Consensus       518 ~~~li~~~~~~g~~~~a~~l~~~m~~  543 (638)
                      ++.|...|...|++++|..++++..+
T Consensus       374 l~nLa~~~~~~g~~~eA~~~~~~Al~  399 (429)
T 3qwp_A          374 VMKVGKLQLHQGMFPQAMKNLRLAFD  399 (429)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            88888899999999999998887664

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=96.10  E-value=0.021  Score=57.24  Aligned_cols=91  Identities=9%  Similarity=-0.034  Sum_probs=72.3

Q ss_pred             hcCChHHHHHHHHHHHHc---CCCC---C-HHHHHHHHHHHcccCCHHHHHHHHHhchhc---cCCCcchhHHHHHHHHH
Q 006615          418 RHGHVELVDRLIAKLRSD---GMRL---P-FSTIRLIIDFYGISKKADAALKAFHDDRTL---CGPISKFKLMLLYSSLL  487 (638)
Q Consensus       418 ~~g~~~~a~~l~~~m~~~---g~~~---~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~li  487 (638)
                      ..|++++|+.++++..+.   -+.|   + ..+++.|..+|...|++++|..++++..+.   .-+...|+...+++.|.
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            457889999999886542   1222   2 367888999999999999999999986543   23345788889999999


Q ss_pred             HHHHccCChHHHHHHHHHHHh
Q 006615          488 RTLTKCKRDFDAINVLEEMIF  508 (638)
Q Consensus       488 ~~~~~~g~~~~A~~l~~~m~~  508 (638)
                      ..|...|++++|+.++++..+
T Consensus       390 ~~~~~qg~~~eA~~~~~~Al~  410 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKAIA  410 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHH
Confidence            999999999999999998765

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.01  E-value=0.053  Score=54.34  Aligned_cols=98  Identities=13%  Similarity=-0.113  Sum_probs=78.4

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHcC---CCC----CHHHHHHHHHHHcccCCHHHHHHHHHhchhc---cCCCcchhHH
Q 006615          411 KMLTILARHGHVELVDRLIAKLRSDG---MRL----PFSTIRLIIDFYGISKKADAALKAFHDDRTL---CGPISKFKLM  480 (638)
Q Consensus       411 ~li~~~~~~g~~~~a~~l~~~m~~~g---~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~  480 (638)
                      ..+..+.+.|++++|++++++..+..   +.|    ...+++.+..+|...|++++|..++++....   ..+...|+..
T Consensus       292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a  371 (429)
T 3qwp_A          292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG  371 (429)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence            34556778899999999999887532   122    2367888999999999999999999986543   2345678888


Q ss_pred             HHHHHHHHHHHccCChHHHHHHHHHHHh
Q 006615          481 LLYSSLLRTLTKCKRDFDAINVLEEMIF  508 (638)
Q Consensus       481 ~~~~~li~~~~~~g~~~~A~~l~~~m~~  508 (638)
                      .+++.|...|...|++++|+.++++..+
T Consensus       372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al~  399 (429)
T 3qwp_A          372 VQVMKVGKLQLHQGMFPQAMKNLRLAFD  399 (429)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            9999999999999999999999998755

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=95.89  E-value=0.055  Score=59.69  Aligned_cols=156  Identities=12%  Similarity=0.113  Sum_probs=109.3

Q ss_pred             HHHHHcCCChhHHHH-HHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcC
Q 006615           73 THALRSAPNADSALS-IMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSG  151 (638)
Q Consensus        73 ~~~l~~~~~~~~Al~-~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g  151 (638)
                      .......+++++|.+ ++..+       ++......++..+.+.|.++.|.++.+.       +.     .-.....+.|
T Consensus       606 ~~~~~~~~~~~~a~~~~l~~i-------~~~~~~~~~~~~l~~~~~~~~a~~~~~~-------~~-----~~f~~~l~~~  666 (814)
T 3mkq_A          606 FQTLTLRGEIEEAIENVLPNV-------EGKDSLTKIARFLEGQEYYEEALNISPD-------QD-----QKFELALKVG  666 (814)
T ss_dssp             HHHHHHTTCHHHHHHHTGGGC-------CCHHHHHHHHHHHHHTTCHHHHHHHCCC-------HH-----HHHHHHHHHT
T ss_pred             HhHHHHhCCHHHHHHHHHhcC-------CchHHHHHHHHHHHhCCChHHheecCCC-------cc-----hheehhhhcC
Confidence            344456788888876 44221       1122447888888999999998876531       11     1234567889


Q ss_pred             CHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006615          152 DLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFS  231 (638)
Q Consensus       152 ~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~  231 (638)
                      +++.|.++.+.+      .+...|..+...+.+.|+++.|.+.|.++..         |..+...|...|+.+...++-+
T Consensus       667 ~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~  731 (814)
T 3mkq_A          667 QLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAK  731 (814)
T ss_dssp             CHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHH
Confidence            999999986544      3478999999999999999999999998864         5566666777788777666655


Q ss_pred             hcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHH
Q 006615          232 ALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM  268 (638)
Q Consensus       232 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m  268 (638)
                      .....|-      ++....+|.+.|++++|.+++.++
T Consensus       732 ~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~~~  762 (814)
T 3mkq_A          732 DAETTGK------FNLAFNAYWIAGDIQGAKDLLIKS  762 (814)
T ss_dssp             HHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHHHcCc------hHHHHHHHHHcCCHHHHHHHHHHc
Confidence            5554331      455555677778888888877664

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=95.81  E-value=0.11  Score=49.82  Aligned_cols=144  Identities=10%  Similarity=-0.001  Sum_probs=94.1

Q ss_pred             cCCHHHHHHHHHHHHh--cCC---hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc----ccC-C---HHHHHHHHHhchh
Q 006615          403 THDVYALEKMLTILAR--HGH---VELVDRLIAKLRSDGMRLPFSTIRLIIDFYG----ISK-K---ADAALKAFHDDRT  469 (638)
Q Consensus       403 ~p~~~~~~~li~~~~~--~g~---~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~----~~g-~---~~~A~~~~~~~~~  469 (638)
                      +.+...|...+++...  .++   ..+|..+|++..+..+. ....+..+..+|.    ..+ .   .......+.....
T Consensus       191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~-~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a  269 (372)
T 3ly7_A          191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPE-FTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT  269 (372)
T ss_dssp             CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence            3456667777765543  333   57899999999877543 3344444333332    110 1   1111112221111


Q ss_pred             ccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 006615          470 LCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPD  549 (638)
Q Consensus       470 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~  549 (638)
                      .   ...|+.+.+|..+...+...|++++|.+.++++...+  |+...|..+-..+.-.|++++|.+.+++....  .|.
T Consensus       270 ~---~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~  342 (372)
T 3ly7_A          270 L---PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPG  342 (372)
T ss_dssp             C---GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCS
T ss_pred             c---ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCC
Confidence            1   2234445788888777777899999999999999974  88888878888999999999999999998874  566


Q ss_pred             HhhHH
Q 006615          550 AYMFK  554 (638)
Q Consensus       550 ~~~~~  554 (638)
                      ..||.
T Consensus       343 ~~t~~  347 (372)
T 3ly7_A          343 ANTLY  347 (372)
T ss_dssp             HHHHH
T ss_pred             cChHH
Confidence            65553

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=95.62  E-value=0.26  Score=47.43  Aligned_cols=155  Identities=13%  Similarity=-0.002  Sum_probs=96.7

Q ss_pred             CCCchHhHHHHHHHHHh--cC---CHHHHHHHHHHHHhcCCCCC-HHhHHHHHHHHHh---cC--ChHHHH---HHHHHH
Q 006615          133 FLNVSVNFMNLMQWYST--SG---DLELVLSTWNEYRQRAKLLS-TESYNIVMSVYAK---TG--KNFEAV---ETFRQV  198 (638)
Q Consensus       133 ~~~~~~~~~~ll~~~~~--~g---~~~~A~~l~~~m~~~~~~p~-~~~~~~li~~~~~---~g--~~~~A~---~~~~~m  198 (638)
                      .+.+...|...+++...  .+   ++.+|..+|++..+..  |+ ...|..+.-+|..   .+  ......   +.++..
T Consensus       190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD--P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~  267 (372)
T 3ly7_A          190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS--PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI  267 (372)
T ss_dssp             SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence            34556667776655543  23   3578888999888865  43 3445444434321   11  111111   122211


Q ss_pred             HH-cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH
Q 006615          199 ID-EGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR  277 (638)
Q Consensus       199 ~~-~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~  277 (638)
                      .. .....+..+|..+...+...|++++|...+++.....  |+...|..+-..+.-.|++++|.+.|++....  .|..
T Consensus       268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~  343 (372)
T 3ly7_A          268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGA  343 (372)
T ss_dssp             HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSH
T ss_pred             HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCc
Confidence            11 1224578888888777777899999999999988764  78777777778888899999999999888765  4555


Q ss_pred             HHHHHHHHHHHcCChH
Q 006615          278 AMRVALERMQEMGFIQ  293 (638)
Q Consensus       278 ~~~~ll~~~~~~g~~~  293 (638)
                      .++.+.....-.-+++
T Consensus       344 ~t~~~~~~l~F~sn~~  359 (372)
T 3ly7_A          344 NTLYWIENGIFQTSVP  359 (372)
T ss_dssp             HHHHHHHHSSSCCCHH
T ss_pred             ChHHHHhCceeecchh
Confidence            5665554443333333

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=95.56  E-value=0.069  Score=40.41  Aligned_cols=58  Identities=21%  Similarity=0.379  Sum_probs=40.1

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH-hHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 006615          143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTE-SYNIVMSVYAKTGKNFEAVETFRQVIDE  201 (638)
Q Consensus       143 ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~  201 (638)
                      ....+.+.|++++|...|++..+.+ +.+.. .|..+..+|.+.|++++|.+.|++..+.
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~   64 (99)
T 2kc7_A            6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL   64 (99)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            3455667777777777777777654 33455 6777777777777777777777777764

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=95.44  E-value=0.4  Score=40.54  Aligned_cols=131  Identities=11%  Similarity=0.101  Sum_probs=93.0

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 006615          144 MQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL  223 (638)
Q Consensus       144 l~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~  223 (638)
                      .....+.|+++.|.++.+++      .+...|..|.....+.|+++-|.+.|.....         |..+.-.|.-.|+.
T Consensus        12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~   76 (177)
T 3mkq_B           12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDV   76 (177)
T ss_dssp             HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCH
T ss_pred             HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCH
Confidence            45567889999999888776      2477899999999999999999999988764         55666667777888


Q ss_pred             HHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHhC
Q 006615          224 DSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREML  303 (638)
Q Consensus       224 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~~  303 (638)
                      +...++-+.....|      -+|.....+.-.|+++++.++|.+.   |..|..     .......|..+.|.++.+++.
T Consensus        77 e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~---~r~~eA-----~~~A~t~g~~~~a~~~~~~~~  142 (177)
T 3mkq_B           77 NKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG---GSLPLA-----YAVAKANGDEAAASAFLEQAE  142 (177)
T ss_dssp             HHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT---TCHHHH-----HHHHHHTTCHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC---CChHHH-----HHHHHHcCcHHHHHHHHHHhC
Confidence            77776655544333      2566666777789999999988654   222211     122234677778888887764

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=95.03  E-value=0.048  Score=41.31  Aligned_cols=55  Identities=15%  Similarity=0.143  Sum_probs=36.3

Q ss_pred             HHHHccCChHHHHHHHHHHHhCCCCc-chh-hHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006615          488 RTLTKCKRDFDAINVLEEMIFSGIVP-DVQ-TFSGLMYHFALQGDEKIVQKLFSMVRQN  544 (638)
Q Consensus       488 ~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~-t~~~li~~~~~~g~~~~a~~l~~~m~~~  544 (638)
                      ..+.+.|++++|.+.|++..+.  .| +.. .|..+..+|...|++++|.+.|++..+.
T Consensus         8 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~   64 (99)
T 2kc7_A            8 KELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL   64 (99)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            3455667777777777777664  23 334 6666666777777777777777777654

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=93.97  E-value=0.63  Score=34.74  Aligned_cols=65  Identities=9%  Similarity=-0.006  Sum_probs=33.4

Q ss_pred             chHhHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 006615          136 VSVNFMNLMQWYSTSGD---LELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE  201 (638)
Q Consensus       136 ~~~~~~~ll~~~~~~g~---~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  201 (638)
                      ++..+..+..++...++   .++|..+|++..+.+ +-++.+...+...+.+.|++++|...|+++.+.
T Consensus         5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~   72 (93)
T 3bee_A            5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS   72 (93)
T ss_dssp             CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            34444444444433332   455566665555543 334445555555555566666666666665553

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=93.94  E-value=1.7  Score=34.51  Aligned_cols=85  Identities=12%  Similarity=0.058  Sum_probs=64.8

Q ss_pred             ccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHH
Q 006615          453 ISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEK  532 (638)
Q Consensus       453 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~  532 (638)
                      .+|++......+-.+...    +     ...+..++.+...|+-+.-.+++.++.. ..+|+....-.+..||.+.|+..
T Consensus        73 ~C~NlKrVi~C~~~~n~~----s-----e~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r  142 (172)
T 1wy6_A           73 KCQNLKSVVECGVINNTL----N-----EHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDER  142 (172)
T ss_dssp             GCSCTHHHHHHHHHTTCC----C-----HHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHH
T ss_pred             hhhcHHHHHHHHHHhcch----H-----HHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchh
Confidence            455555555555543221    1     4567778888999999999999999644 34678888889999999999999


Q ss_pred             HHHHHHHHHHhCCCC
Q 006615          533 IVQKLFSMVRQNGVE  547 (638)
Q Consensus       533 ~a~~l~~~m~~~~~~  547 (638)
                      +|.+++.+..+.|++
T Consensus       143 ~a~eLl~~AC~kG~k  157 (172)
T 1wy6_A          143 DATTLLIEACKKGEK  157 (172)
T ss_dssp             HHHHHHHHHHHTTCH
T ss_pred             hHHHHHHHHHHhhhH
Confidence            999999999999964

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=93.90  E-value=2.6  Score=35.59  Aligned_cols=101  Identities=11%  Similarity=0.080  Sum_probs=50.6

Q ss_pred             HhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHH
Q 006615          113 AKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAV  192 (638)
Q Consensus       113 ~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~  192 (638)
                      ...|+++.|.++.+.+      .+...|..|.+...+.|+++-|.+.|.....         +..+.-.|.-.|+.+.-.
T Consensus        16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~   80 (177)
T 3mkq_B           16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS   80 (177)
T ss_dssp             HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred             HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence            3455666665555443      2344566666666666666666666655432         333333444455554444


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcc
Q 006615          193 ETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP  234 (638)
Q Consensus       193 ~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~  234 (638)
                      .+-+.....|      -++.....+.-.|+++++.++|.+..
T Consensus        81 kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~  116 (177)
T 3mkq_B           81 KMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGG  116 (177)
T ss_dssp             HHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred             HHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence            3333333222      13444444555566666666665544

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=93.63  E-value=0.47  Score=39.04  Aligned_cols=19  Identities=21%  Similarity=0.183  Sum_probs=8.2

Q ss_pred             HHHHcCCHHHHHHHHHhcc
Q 006615          216 HLVNLGKLDSALEVFSALP  234 (638)
Q Consensus       216 ~~~~~g~~~~A~~~~~~m~  234 (638)
                      +|.+.|++++|.+.++.+.
T Consensus        80 ~~~kl~~Y~~A~~y~~~lL   98 (152)
T 1pc2_A           80 GNYRLKEYEKALKYVRGLL   98 (152)
T ss_dssp             HHHHTSCHHHHHHHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHHH
Confidence            3344444444444444443

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=93.57  E-value=0.64  Score=34.71  Aligned_cols=63  Identities=10%  Similarity=-0.003  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHccCC---hHHHHHHHHHHHhCCCCcc-hhhHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 006615          481 LLYSSLLRTLTKCKR---DFDAINVLEEMIFSGIVPD-VQTFSGLMYHFALQGDEKIVQKLFSMVRQNG  545 (638)
Q Consensus       481 ~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~  545 (638)
                      ..+..+..++...++   .++|.+++++..+.  .|+ ......+-..+.+.|++++|...|+.+.+..
T Consensus         7 ~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~   73 (93)
T 3bee_A            7 TQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN   73 (93)
T ss_dssp             HHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            456666666544333   68888888888774  444 4556666677888888888888888888753

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=93.43  E-value=0.79  Score=37.68  Aligned_cols=25  Identities=12%  Similarity=0.275  Sum_probs=13.8

Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHh
Q 006615          246 LILVEGFVGVERFDEAKSLLNEMRD  270 (638)
Q Consensus       246 ~~li~~~~~~g~~~~A~~l~~~m~~  270 (638)
                      -.|--+|.+.|++++|.+.++.+.+
T Consensus        75 Y~LAv~~~kl~~Y~~A~~y~~~lL~   99 (152)
T 1pc2_A           75 FYLAVGNYRLKEYEKALKYVRGLLQ   99 (152)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHh
Confidence            3344455556666666666665554

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=93.36  E-value=0.47  Score=36.30  Aligned_cols=61  Identities=8%  Similarity=-0.011  Sum_probs=31.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcC------CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006615          140 FMNLMQWYSTSGDLELVLSTWNEYRQRA------KLLSTESYNIVMSVYAKTGKNFEAVETFRQVID  200 (638)
Q Consensus       140 ~~~ll~~~~~~g~~~~A~~l~~~m~~~~------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  200 (638)
                      +-.|...+.+.|+++.|...|+...+.-      -.+....+..|..++.+.|+++.|...+++..+
T Consensus         8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~   74 (104)
T 2v5f_A            8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE   74 (104)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence            3445555555555555555555544320      012344455555555555555555555555554

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=92.12  E-value=0.76  Score=42.34  Aligned_cols=104  Identities=13%  Similarity=0.060  Sum_probs=77.3

Q ss_pred             HHhHHHHHHH-HHhc--CC------hHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHH-----cCCHHHHHHHHHhcc
Q 006615          172 TESYNIVMSV-YAKT--GK------NFEAVETFRQVIDEGAIPN---SRTYTVMIEHLVN-----LGKLDSALEVFSALP  234 (638)
Q Consensus       172 ~~~~~~li~~-~~~~--g~------~~~A~~~~~~m~~~g~~p~---~~ty~~li~~~~~-----~g~~~~A~~~~~~m~  234 (638)
                      ...|..++.+ ++..  |+      ...|..++++..+  +.|+   ...|..+...|.+     -|+.++|.+.|++..
T Consensus       154 ~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL  231 (301)
T 3u64_A          154 TLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLT  231 (301)
T ss_dssp             HHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHH
Confidence            3446655543 3332  33      3566777777776  4566   5688888888988     499999999999988


Q ss_pred             cCCCcc--CHhHHHHHHHHHHcc-CCHHHHHHHHHHHHhCCCC--CCHHH
Q 006615          235 LMRIKR--TSKQYLILVEGFVGV-ERFDEAKSLLNEMRDDGKF--PGRAM  279 (638)
Q Consensus       235 ~~g~~p--~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~--p~~~~  279 (638)
                      +.  .|  +..++......++.. |+.+++.+.+++.......  |+...
T Consensus       232 ~L--nP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~l  279 (301)
T 3u64_A          232 RY--CSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKL  279 (301)
T ss_dssp             HH--CCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHH
T ss_pred             Hh--CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhH
Confidence            74  45  377788888889884 9999999999999998877  66543

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=91.97  E-value=11  Score=37.66  Aligned_cols=194  Identities=9%  Similarity=-0.026  Sum_probs=96.7

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHH----cCCCCCH--HHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhH--
Q 006615          408 ALEKMLTILARHGHVELVDRLIAKLRS----DGMRLPF--STIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKL--  479 (638)
Q Consensus       408 ~~~~li~~~~~~g~~~~a~~l~~~m~~----~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--  479 (638)
                      .+..-++.|...+++..|..++.++..    ....|+.  ..+...+..+...+++.+|.+.|.++-........+..  
T Consensus       179 ~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~  258 (445)
T 4b4t_P          179 FILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWK  258 (445)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHH
Confidence            344566677777788777777776532    2222222  34455566666777887777777765432211112211  


Q ss_pred             HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHcc--CCHHHHHHHHHHHHhCC-CC----CCHhh
Q 006615          480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQ--GDEKIVQKLFSMVRQNG-VE----PDAYM  552 (638)
Q Consensus       480 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~--g~~~~a~~l~~~m~~~~-~~----p~~~~  552 (638)
                      ...+..++.... .+....-..+.........-++...|..|+.+|...  .+++.+.+.|....... +.    .+...
T Consensus       259 ~~L~~~v~~~iL-a~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~~~~~~~~~~~~  337 (445)
T 4b4t_P          259 PVLSHIVYFLVL-SPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNEDDLAFGGEANKHH  337 (445)
T ss_dssp             HHHHHHHHHHHH-SSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTCCSSCCCSCSSHH
T ss_pred             HHHHHHHHHHHh-CCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhcccchhhhcchhhHH
Confidence            011222222222 222222222333332222235778888999988764  45666666665433221 10    11223


Q ss_pred             HHHHHHHHHHH-hhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHccC
Q 006615          553 FKVLIQAYCKY-LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKIND  604 (638)
Q Consensus       553 ~~~li~~~~~~-m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~  604 (638)
                      +..|....... +....-.-+..++..|...+.-  ..+++++.+..|...|.
T Consensus       338 ~~~L~~~v~ehnl~~i~k~Ys~I~l~~la~lL~l--~~~evE~~ls~mI~~g~  388 (445)
T 4b4t_P          338 WEDLQKRVIEHNLRVISEYYSRITLLRLNELLDL--TESQTETYISDLVNQGI  388 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHTS--CHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHHHHHHhceeeHHHHHHHhCc--CHHHHHHHHHHHHHCCC
Confidence            44444444333 1110001133445555555543  56889999999988776

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=91.96  E-value=3.9  Score=32.52  Aligned_cols=68  Identities=18%  Similarity=0.124  Sum_probs=42.0

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC
Q 006615          206 NSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKF  274 (638)
Q Consensus       206 ~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~  274 (638)
                      +..-+...++.....|+-|+-.+++..+... .+|+....-.+..+|.+.|+..+|.+++.+.-+.|++
T Consensus        90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k  157 (172)
T 1wy6_A           90 LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK  157 (172)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred             hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence            3444555566666667777777776664321 2455666666667777777777777777776666654

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=91.66  E-value=1.9  Score=32.73  Aligned_cols=66  Identities=11%  Similarity=-0.006  Sum_probs=46.6

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHHHHhC------CCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 006615          102 QSTLHALATVLAKSQRNHELKTLIGDISSS------KFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRA  167 (638)
Q Consensus       102 ~~~~~~li~~~~~~~~~~~a~~l~~~~~~~------~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~  167 (638)
                      ...+..+...+...+++..|..+++...+.      .-.+....+..|..+|.+.|+++.|...+++..+..
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~   76 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD   76 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence            345666777777777888887777765442      112445667788888888888888888888887653

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=91.56  E-value=2.1  Score=39.49  Aligned_cols=84  Identities=10%  Similarity=-0.018  Sum_probs=53.0

Q ss_pred             HHHHHHHHHhchhccCCCcchh--HHHHHHHHHHHHHc-----cCChHHHHHHHHHHHhCCCCc--chhhHHHHHHHHHc
Q 006615          457 ADAALKAFHDDRTLCGPISKFK--LMLLYSSLLRTLTK-----CKRDFDAINVLEEMIFSGIVP--DVQTFSGLMYHFAL  527 (638)
Q Consensus       457 ~~~A~~~~~~~~~~~~~~~~~~--~~~~~~~li~~~~~-----~g~~~~A~~l~~~m~~~g~~p--~~~t~~~li~~~~~  527 (638)
                      ...|...+++..+.     +|+  ....|..+...|.+     -|+.++|.+.|++..+.  .|  +..++......++.
T Consensus       179 l~~A~a~lerAleL-----DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--nP~~~id~~v~YA~~l~~  251 (301)
T 3u64_A          179 VHAAVMMLERACDL-----WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--CSAHDPDHHITYADALCI  251 (301)
T ss_dssp             HHHHHHHHHHHHHH-----CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--CCTTCSHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHh-----CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--CCCCCchHHHHHHHHHHH
Confidence            34444555554443     222  23567777777777     37778888888777774  45  35666666677776


Q ss_pred             c-CCHHHHHHHHHHHHhCCCC
Q 006615          528 Q-GDEKIVQKLFSMVRQNGVE  547 (638)
Q Consensus       528 ~-g~~~~a~~l~~~m~~~~~~  547 (638)
                      . |+.+++.+.+++..+....
T Consensus       252 ~~gd~~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          252 PLNNRAGFDEALDRALAIDPE  272 (301)
T ss_dssp             TTTCHHHHHHHHHHHHHCCGG
T ss_pred             hcCCHHHHHHHHHHHHcCCCC
Confidence            4 7778888888777775433

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=88.93  E-value=3.6  Score=33.47  Aligned_cols=101  Identities=9%  Similarity=0.026  Sum_probs=51.3

Q ss_pred             hhHHHHHHHHHHhcCCh------HHHHHHHHHHHhCCCCCchH-hHHHHHH------HHHhcCCHHHHHHHHHHHHhcCC
Q 006615          102 QSTLHALATVLAKSQRN------HELKTLIGDISSSKFLNVSV-NFMNLMQ------WYSTSGDLELVLSTWNEYRQRAK  168 (638)
Q Consensus       102 ~~~~~~li~~~~~~~~~------~~a~~l~~~~~~~~~~~~~~-~~~~ll~------~~~~~g~~~~A~~l~~~m~~~~~  168 (638)
                      ..+|-..+..+-+.|+.      +..+++|++.... ++|+.. .|..-+.      .+...++.++|.++|+.+....-
T Consensus        13 yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~hK   91 (161)
T 4h7y_A           13 PEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANCK   91 (161)
T ss_dssp             HHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhH
Confidence            33555555555555555      5556666665542 334321 0111111      11223566677777776654422


Q ss_pred             CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 006615          169 LLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAI  204 (638)
Q Consensus       169 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~  204 (638)
                      .- ...|-....--.+.|++..|.+++......+.+
T Consensus        92 kF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k  126 (161)
T 4h7y_A           92 KF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV  126 (161)
T ss_dssp             TB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred             HH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence            22 444444444455667777777777666665544

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=88.88  E-value=3.4  Score=40.46  Aligned_cols=127  Identities=17%  Similarity=0.184  Sum_probs=81.7

Q ss_pred             cCCHHHHHHHHHHHH---hcCChHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHcccCCH-HHHHHHHHhchhccCCCcc
Q 006615          403 THDVYALEKMLTILA---RHGHVELVDRLIAKLRSD--GMRLPFSTIRLIIDFYGISKKA-DAALKAFHDDRTLCGPISK  476 (638)
Q Consensus       403 ~p~~~~~~~li~~~~---~~g~~~~a~~l~~~m~~~--g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~~~~~~~  476 (638)
                      ..|...|..++....   ..|+.+.|.+.+......  |......         . ...+ +....-+++..        
T Consensus       109 ~~D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~---------~-~~~w~~~~r~~l~~~~--------  170 (388)
T 2ff4_A          109 TCDLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDL---------R-DFQFVEPFATALVEDK--------  170 (388)
T ss_dssp             GBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGG---------T-TSTTHHHHHHHHHHHH--------
T ss_pred             cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCC---------C-chhHHHHHHHHHHHHH--------
Confidence            335556666655433   357888888888877643  3221110         0 0111 11122222211        


Q ss_pred             hhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHh-----CCCCCCHh
Q 006615          477 FKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQ-----NGVEPDAY  551 (638)
Q Consensus       477 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~-----~~~~p~~~  551 (638)
                         ..+...++..+...|+.++|...++.+.... +-+...|..+|.++.+.|+..+|++.|+...+     .|+.|...
T Consensus       171 ---~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~  246 (388)
T 2ff4_A          171 ---VLAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT  246 (388)
T ss_dssp             ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred             ---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence               1355667888889999999999999887642 34778999999999999999999999987764     35555543

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=88.77  E-value=2.3  Score=31.64  Aligned_cols=74  Identities=11%  Similarity=0.224  Sum_probs=57.4

Q ss_pred             ChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHHhhhCCC
Q 006615          495 RDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNL  569 (638)
Q Consensus       495 ~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~m~~~g~  569 (638)
                      +.-+..+-++.+....+.|+.....+.++||.+..++..|.++|+-++.+- .+...+|..+++-.--.+.+.|+
T Consensus        25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lqElkPtl~ELGI   98 (109)
T 1v54_E           25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQELRPTLNELGI   98 (109)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHHHHHHHHHHHTC
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHHHHhhHHHHhCC
Confidence            444667777777778899999999999999999999999999999888652 34455677777666555555555

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=88.44  E-value=2.2  Score=41.87  Aligned_cols=69  Identities=10%  Similarity=0.070  Sum_probs=40.7

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc-----CCCccCHhH
Q 006615          175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPL-----MRIKRTSKQ  244 (638)
Q Consensus       175 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~  244 (638)
                      ...++.++...|+.++|...+..+.... +-+...|..+|.++.+.|+..+|.+.|+...+     .|+.|+..+
T Consensus       174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l  247 (388)
T 2ff4_A          174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  247 (388)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence            4445556666666666666666665531 22555666666666666666666666665432     466666554

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=88.36  E-value=0.00072  Score=66.21  Aligned_cols=263  Identities=11%  Similarity=0.100  Sum_probs=159.9

Q ss_pred             HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHH
Q 006615          172 TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEG  251 (638)
Q Consensus       172 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~  251 (638)
                      ...|..|..+..+.+++.+|++.|-+.      -|...|..+|....+.|.+++-.+.+...++.  ..+..+=+.|+-+
T Consensus        54 p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~a  125 (624)
T 3lvg_A           54 PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFA  125 (624)
T ss_dssp             CCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHH
T ss_pred             ccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHH
Confidence            346777888888878777777665322      25556788888888888888888887766654  2344555678888


Q ss_pred             HHccCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHcCChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCC
Q 006615          252 FVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNS  330 (638)
Q Consensus       252 ~~~~g~~~~A~~l~~~m~~~g~~p~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (638)
                      |++.++..+..+++.       .|+.+- -.+...|...|.++.|.-+|..+..-.........                
T Consensus       126 yAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~----------------  182 (624)
T 3lvg_A          126 LAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVH----------------  182 (624)
T ss_dssp             HHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSS----------------
T ss_pred             HHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHH----------------
Confidence            888888766544432       244433 36677888888888888888777544333222211                


Q ss_pred             CccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHH
Q 006615          331 GVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALE  410 (638)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~  410 (638)
                                                                          .+++..|.+.-       .-.-++.||-
T Consensus       183 ----------------------------------------------------L~~yq~AVdaA-------rKAns~ktWK  203 (624)
T 3lvg_A          183 ----------------------------------------------------LGEYQAAVDGA-------RKANSTRTWK  203 (624)
T ss_dssp             ----------------------------------------------------CSGGGSSTTTT-------TTCCSSCSHH
T ss_pred             ----------------------------------------------------HHHHHHHHHHH-------HhcCChhHHH
Confidence                                                                22222222111       1123667888


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHH
Q 006615          411 KMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTL  490 (638)
Q Consensus       411 ~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~  490 (638)
                      .+-.+|...+.+..|.-.--.++-+.-     -...++.-|-..|.+++-+.+++.....     ....+.+|+-|.-.|
T Consensus       204 eV~~ACvd~~EfrLAqicGLniIvhad-----eL~elv~~YE~~G~f~ELIsLlEaglgl-----ErAHmGmFTELaILY  273 (624)
T 3lvg_A          204 EVCFACVDGKEFRLAQMCGLHIVVHAD-----ELEELINYYQDRGYFEELITMLEAALGL-----ERAHMGMFTELAILY  273 (624)
T ss_dssp             HHTHHHHHSCTTTTTTHHHHHHHCCSS-----CCSGGGSSSSTTCCCTTSTTTHHHHTTS-----TTCCHHHHHHHHHHH
T ss_pred             HHHHHHhCchHHHHHHHhcchhcccHH-----HHHHHHHHHHhCCCHHHHHHHHHHHhCC-----CchhHHHHHHHHHHH
Confidence            888899999998877655444442211     1224677788888888888888875432     222257888888888


Q ss_pred             HccCChHHHHHHHHHHHhC-CCC------cchhhHHHHHHHHHccCCHHHHH
Q 006615          491 TKCKRDFDAINVLEEMIFS-GIV------PDVQTFSGLMYHFALQGDEKIVQ  535 (638)
Q Consensus       491 ~~~g~~~~A~~l~~~m~~~-g~~------p~~~t~~~li~~~~~~g~~~~a~  535 (638)
                      ++- +.++-++.++-.-.+ +++      -....|.-++--|.+-.+++.|.
T Consensus       274 sKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~  324 (624)
T 3lvg_A          274 SKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI  324 (624)
T ss_dssp             HSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred             Hhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence            876 344444443322111 110      12344555555555555555543

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=88.29  E-value=2.6  Score=31.37  Aligned_cols=63  Identities=11%  Similarity=0.101  Sum_probs=41.0

Q ss_pred             ChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH
Q 006615          117 RNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMS  180 (638)
Q Consensus       117 ~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~  180 (638)
                      +.-+.++-++.+......|++.+..+.+++|-+.+++..|.++|+.++.+- .+...+|..+++
T Consensus        25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq   87 (109)
T 1v54_E           25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ   87 (109)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence            344556666666666777777777777777777777777777777776552 233445666554

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=86.48  E-value=6.4  Score=32.05  Aligned_cols=56  Identities=14%  Similarity=0.022  Sum_probs=39.8

Q ss_pred             cCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 006615          493 CKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPD  549 (638)
Q Consensus       493 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~  549 (638)
                      .++.++|.++|+.+++.+-+- ...|.....-=.+.|++..|.+++...+..+-+|.
T Consensus        73 i~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~  128 (161)
T 4h7y_A           73 IQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL  128 (161)
T ss_dssp             HHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred             hcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence            378888888888887642222 45555555555678999999999998888765554

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=85.40  E-value=8.5  Score=41.08  Aligned_cols=123  Identities=11%  Similarity=0.245  Sum_probs=73.8

Q ss_pred             HHHHHHHhcCC-HHHHHHHHHHHHhcCCCCCHHh--HHHHHHHHHhcCC-hHHHHHHHHHHHHc------CCCC-CHH--
Q 006615          142 NLMQWYSTSGD-LELVLSTWNEYRQRAKLLSTES--YNIVMSVYAKTGK-NFEAVETFRQVIDE------GAIP-NSR--  208 (638)
Q Consensus       142 ~ll~~~~~~g~-~~~A~~l~~~m~~~~~~p~~~~--~~~li~~~~~~g~-~~~A~~~~~~m~~~------g~~p-~~~--  208 (638)
                      .|++.+...|+ .+.|..+|+++....  |...+  ...+|..+.+.++ --+|.+++.+..+.      ...+ +..  
T Consensus       253 ~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~  330 (754)
T 4gns_B          253 SLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA  330 (754)
T ss_dssp             HHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred             HHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence            34454445555 577899999988875  32222  2233333333322 23455555444321      1222 111  


Q ss_pred             --------HHHHHHHHHHHcCCHHHHHHHHHhcccCCCcc-CHhHHHHHHHHHHccCCHHHHHHHHHHH
Q 006615          209 --------TYTVMIEHLVNLGKLDSALEVFSALPLMRIKR-TSKQYLILVEGFVGVERFDEAKSLLNEM  268 (638)
Q Consensus       209 --------ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m  268 (638)
                              ..+.=.+.|...|+++.|.++-.+....  .| +-.+|..|..+|...|+++.|+-.++.+
T Consensus       331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence                    1111234466788999999988887653  45 4678999999999999999999888877

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=85.37  E-value=3.1  Score=32.82  Aligned_cols=19  Identities=21%  Similarity=0.183  Sum_probs=7.8

Q ss_pred             HHHHcCCHHHHHHHHHhcc
Q 006615          216 HLVNLGKLDSALEVFSALP  234 (638)
Q Consensus       216 ~~~~~g~~~~A~~~~~~m~  234 (638)
                      ++.+.|++++|.+.++.+.
T Consensus        83 g~yklg~Y~~A~~~~~~lL  101 (126)
T 1nzn_A           83 GNYRLKEYEKALKYVRGLL  101 (126)
T ss_dssp             HHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHhhhHHHHHHHHHHHH
Confidence            3344444444444444333

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=84.30  E-value=0.011  Score=58.10  Aligned_cols=214  Identities=11%  Similarity=0.048  Sum_probs=114.8

Q ss_pred             CCCHHHHHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHH
Q 006615           66 LLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQ  145 (638)
Q Consensus        66 ~~~~~~~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~  145 (638)
                      +..+.-++.+..+.|.+++-+..+.-.++. ...|  ..=+.|+-+|++.+++.+.++++       -.||..-...+.+
T Consensus        83 ps~y~eVi~~A~~~~~~edLv~yL~MaRk~-~ke~--~IDteLi~ayAk~~rL~elEefl-------~~~N~A~iq~VGD  152 (624)
T 3lvg_A           83 PSSYMEVVQAANTSGNWEELVKYLQMARKK-ARES--YVETELIFALAKTNRLAELEEFI-------NGPNNAHIQQVGD  152 (624)
T ss_dssp             CCSSSHHHHHTTTSSCCTTHHHHHHTTSTT-CCST--TTTHHHHHHHHTSCSSSTTTSTT-------SCCSSSCTHHHHH
T ss_pred             hHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-hccc--ccHHHHHHHHHhhCcHHHHHHHH-------cCCCcccHHHHHH
Confidence            344455777777777777777777666543 2222  24456777777777766543332       1245444556666


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcC--------------------CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 006615          146 WYSTSGDLELVLSTWNEYRQRA--------------------KLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIP  205 (638)
Q Consensus       146 ~~~~~g~~~~A~~l~~~m~~~~--------------------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p  205 (638)
                      -|...|.++.|.-+|..+....                    -..++.||..+-.+|...+.+.-|.-.--.+.-.   |
T Consensus       153 rcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---a  229 (624)
T 3lvg_A          153 RCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---A  229 (624)
T ss_dssp             HHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---S
T ss_pred             HHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc---H
Confidence            6677777777766665443211                    0224566777777777777766655444333321   1


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 006615          206 NSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALER  285 (638)
Q Consensus       206 ~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~  285 (638)
                      |  -...++..|-+.|.+++-..+++.-.... ....-+|+-|.-.|++-. +++..+-++-.-.+=-.|     .++++
T Consensus       230 d--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY~-PeKlmEHlklf~sriNip-----Kvira  300 (624)
T 3lvg_A          230 D--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK-PQKMREHLELFWSRVNIP-----KVLRA  300 (624)
T ss_dssp             S--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSSC-TTHHHHHHTTSSSSSCCT-----TTHHH
T ss_pred             H--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhccHH-----HHHHH
Confidence            1  22334555666777777666666544211 245566777777777753 233222221110000011     24556


Q ss_pred             HHHcCChHHHHHHHHH
Q 006615          286 MQEMGFIQGANEFLRE  301 (638)
Q Consensus       286 ~~~~g~~~~a~~~~~~  301 (638)
                      |.+...|.++.-++..
T Consensus       301 cE~ahLW~ElvfLY~~  316 (624)
T 3lvg_A          301 AEQAHLWAELVFLYDK  316 (624)
T ss_dssp             HTTTTCHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHhc
Confidence            6666666665555543

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=83.94  E-value=5.9  Score=31.22  Aligned_cols=80  Identities=4%  Similarity=-0.090  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHH---HHHHHHHHHhcCCCC--CHHhHHHHHHHHHhcCChHHHHH
Q 006615          119 HELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLEL---VLSTWNEYRQRAKLL--STESYNIVMSVYAKTGKNFEAVE  193 (638)
Q Consensus       119 ~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~---A~~l~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~  193 (638)
                      ..+++-|......|. ++..+--.+.-++.+..+..+   ++.+++++...+ .|  .....-.|.-++.+.|++++|.+
T Consensus        18 ~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~   95 (126)
T 1nzn_A           18 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK   95 (126)
T ss_dssp             HHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence            334444444333332 444444445555666655444   666666666543 12  22333344456677777777777


Q ss_pred             HHHHHHH
Q 006615          194 TFRQVID  200 (638)
Q Consensus       194 ~~~~m~~  200 (638)
                      .++.+.+
T Consensus        96 ~~~~lL~  102 (126)
T 1nzn_A           96 YVRGLLQ  102 (126)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7777776

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=83.31  E-value=38  Score=33.64  Aligned_cols=190  Identities=17%  Similarity=0.215  Sum_probs=120.4

Q ss_pred             CChhHHHHHHHHHH----cCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHh-CCCCCchHhH--HHHHHHHHhcCC
Q 006615           80 PNADSALSIMEALK----SNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS-SKFLNVSVNF--MNLMQWYSTSGD  152 (638)
Q Consensus        80 ~~~~~Al~~~~~~~----~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~-~~~~~~~~~~--~~ll~~~~~~g~  152 (638)
                      |+++.|++-+-.+.    ..............++..|...++++...+.+..+.+ +|..+...+.  +.++........
T Consensus        30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~  109 (445)
T 4b4t_P           30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS  109 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred             CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence            67788887775554    2334566677889999999999999999887776653 4444433321  222333333333


Q ss_pred             HHH--HHHHHHHHHhc--C-CCC---CHHhHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHHHH
Q 006615          153 LEL--VLSTWNEYRQR--A-KLL---STESYNIVMSVYAKTGKNFEAVETFRQVIDE--GAIPN---SRTYTVMIEHLVN  219 (638)
Q Consensus       153 ~~~--A~~l~~~m~~~--~-~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~---~~ty~~li~~~~~  219 (638)
                      .+.  -..+.+.+...  | +-.   .......|...|-..|++.+|.+++.++...  |....   ...|...++.|..
T Consensus       110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~  189 (445)
T 4b4t_P          110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL  189 (445)
T ss_dssp             THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence            332  22222222110  1 111   1223456778899999999999999998753  32221   3456677888999


Q ss_pred             cCCHHHHHHHHHhccc----CCCccC--HhHHHHHHHHHHccCCHHHHHHHHHHHH
Q 006615          220 LGKLDSALEVFSALPL----MRIKRT--SKQYLILVEGFVGVERFDEAKSLLNEMR  269 (638)
Q Consensus       220 ~g~~~~A~~~~~~m~~----~g~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~  269 (638)
                      .+++..|..++..+..    ....|+  ...|..++..+...+++.+|.+.|.+..
T Consensus       190 ~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~  245 (445)
T 4b4t_P          190 KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY  245 (445)
T ss_dssp             HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            9999999988887642    111222  2456777788888999999988887763

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=83.30  E-value=8.1  Score=41.20  Aligned_cols=129  Identities=8%  Similarity=0.033  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHhcCC-hHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCC-HHHHHHHHHHHHhc------CCCC-CHHh
Q 006615          104 TLHALATVLAKSQR-NHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGD-LELVLSTWNEYRQR------AKLL-STES  174 (638)
Q Consensus       104 ~~~~li~~~~~~~~-~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~-~~~A~~l~~~m~~~------~~~p-~~~~  174 (638)
                      ....+++.+...++ .+.+..+++++.+.....+.....+++..+.+.++ --+|.++..+..+.      ..++ +...
T Consensus       250 L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~  329 (754)
T 4gns_B          250 LMYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS  329 (754)
T ss_dssp             HHHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred             HHHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence            44556666666666 57788899888775422222222233343333332 23444444443321      1111 1111


Q ss_pred             ---H---HHHH----HHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhcc
Q 006615          175 ---Y---NIVM----SVYAKTGKNFEAVETFRQVIDEGAIP-NSRTYTVMIEHLVNLGKLDSALEVFSALP  234 (638)
Q Consensus       175 ---~---~~li----~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~~~~~m~  234 (638)
                         .   ..|+    +-+...|+++.|+++-++....  .| +-.||..|..+|.+.|+++.|+-.++-++
T Consensus       330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNScP  398 (754)
T 4gns_B          330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSMP  398 (754)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence               1   1122    3355689999999999988874  45 57899999999999999999999998876

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=83.19  E-value=26  Score=31.68  Aligned_cols=119  Identities=12%  Similarity=0.059  Sum_probs=78.2

Q ss_pred             HHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCC--CCCCHhhHHHHHHHHHHH--
Q 006615          488 RTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNG--VEPDAYMFKVLIQAYCKY--  563 (638)
Q Consensus       488 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~--~~p~~~~~~~li~~~~~~--  563 (638)
                      ..+.+.|.+++|++...+-++.. +-|...=..|+.-+|-.|+++.|.+-++...+..  ..|...+|..+|.+=..+  
T Consensus         5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~R~~   83 (273)
T 1zbp_A            5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKD   83 (273)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHHHH
Confidence            34567888888888887777763 2255556677788888889988888888777642  223344555555554443  


Q ss_pred             hhhCCC-----CCCHHHHHHHHHHHh--ccCcHHHHHHHHHHHHHccCCCC
Q 006615          564 LSNSNL-----MPDAATKELLKKSLW--KEGRRKEAAAVEERCEKINDVPS  607 (638)
Q Consensus       564 m~~~g~-----~p~~~~~~~li~~~~--~~g~~~~A~~~~~~~~~~~~~~~  607 (638)
                      +-.-+-     .........|+.++.  ..|+.++|.++.+...+.-...+
T Consensus        84 vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~  134 (273)
T 1zbp_A           84 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG  134 (273)
T ss_dssp             HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred             HHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccC
Confidence            111111     122335577888776  56999999999999988755333

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=82.95  E-value=5.8  Score=31.35  Aligned_cols=73  Identities=11%  Similarity=0.227  Sum_probs=55.7

Q ss_pred             hHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHHhhhCCC
Q 006615          496 DFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNL  569 (638)
Q Consensus       496 ~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~m~~~g~  569 (638)
                      .-+..+-++.+....+.|+......-+++|-+..++..|.++|+-++.+ ..+...+|..+++-.--.+.+.||
T Consensus        69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lqElkPtl~ELGI  141 (152)
T 2y69_E           69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQELRPTLNELGI  141 (152)
T ss_dssp             HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHHHHhhHHHHhCC
Confidence            3345666667777788999999999999999999999999999988865 344556677777666555555555

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=82.25  E-value=19  Score=41.11  Aligned_cols=149  Identities=12%  Similarity=-0.012  Sum_probs=98.6

Q ss_pred             HHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-----------------
Q 006615          376 VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMR-----------------  438 (638)
Q Consensus       376 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~-----------------  438 (638)
                      +...+...+..+.+.++..+.      ..+...--.+..+|...|++++|.++|.+.-. |+.                 
T Consensus       818 l~~~l~~~~~~~~~~~l~~~~------~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~  890 (1139)
T 4fhn_B          818 LVEKLFLFKQYNACMQLIGWL------NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAE  890 (1139)
T ss_dssp             HHHHHHHHSCTTHHHHHHHHS------CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHhhhc------cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccccc
Confidence            344455567777788777665      22444444566678889999999999976421 110                 


Q ss_pred             ------CCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhH-HHHHHHHHHHHHccCChHHHHHHHHHHHhCCC
Q 006615          439 ------LPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKL-MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGI  511 (638)
Q Consensus       439 ------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~  511 (638)
                            .-..-|..++..+.+.+.++.+.++-....+..... .++. ...|..+..++...|++++|...+-.+.....
T Consensus       891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~-~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~  969 (1139)
T 4fhn_B          891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETD-DEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL  969 (1139)
T ss_dssp             TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSC-CHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS
T ss_pred             cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCC-ChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH
Confidence                  112346677777778888887777766655433222 2221 24789999999999999999999988877544


Q ss_pred             CcchhhHHHHHHHHHccCCHHHH
Q 006615          512 VPDVQTFSGLMYHFALQGDEKIV  534 (638)
Q Consensus       512 ~p~~~t~~~li~~~~~~g~~~~a  534 (638)
                      +  ......|+..+|..|..+.-
T Consensus       970 r--~~cLr~LV~~lce~~~~~~L  990 (1139)
T 4fhn_B          970 K--KSCLLDFVNQLTKQGKINQL  990 (1139)
T ss_dssp             C--HHHHHHHHHHHHHHCCHHHH
T ss_pred             H--HHHHHHHHHHHHhCCChhhh
Confidence            3  45577788877777765543

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=81.40  E-value=8.6  Score=30.41  Aligned_cols=63  Identities=10%  Similarity=0.078  Sum_probs=45.9

Q ss_pred             hHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH
Q 006615          118 NHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSV  181 (638)
Q Consensus       118 ~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~  181 (638)
                      .-+.++-++.+....+.|++.+..+-+++|-+.+++..|..+|+.++.+ +.+....|..+++-
T Consensus        69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lqE  131 (152)
T 2y69_E           69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQE  131 (152)
T ss_dssp             HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHHH
Confidence            3456666777777778888888888888888888888888888887765 23445567766643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	638
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.83
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.83
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.41
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.29
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.92
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.88
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.88
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	98.83
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	98.77
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.77
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.6
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.57
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.56
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.56
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	98.28
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.27
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.23
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.21
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.11
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.99
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.94
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	97.94
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	97.94
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	97.9
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	97.87
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	97.7
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.7
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.69
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	97.63
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	97.57
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.48
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.43
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.32
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.28
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.23
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	97.18
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	97.16
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.12
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.06
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.03
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	96.93
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	96.93
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	96.92
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	96.8
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	96.78
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	96.77
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	96.72
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	96.56
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	96.39
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	96.13
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	95.97
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	95.38
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	94.71
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	94.61
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	93.84
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	93.75
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	92.34
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	90.16
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	88.76
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	86.82
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	85.16

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=4.1e-17  Score=162.36  Aligned_cols=365  Identities=14%  Similarity=0.044  Sum_probs=235.1

Q ss_pred             HHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCCh
Q 006615          109 ATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKN  188 (638)
Q Consensus       109 i~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~  188 (638)
                      ...+.+.|++++|.+.++++.+.. +.+...+..+...|.+.|++++|...|++..+.+ +-+..+|..+..+|.+.|++
T Consensus         6 a~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~   83 (388)
T d1w3ba_           6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL   83 (388)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccc
Confidence            344556677777777777666542 2345556666667777777777777777766654 33456666667777777777


Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHH
Q 006615          189 FEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM  268 (638)
Q Consensus       189 ~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m  268 (638)
                      ++|.+.+....+.... +..............+....+........... .................+....+...+.+.
T Consensus        84 ~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (388)
T d1w3ba_          84 QEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA  161 (388)
T ss_dssp             HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             cccccccccccccccc-cccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHh
Confidence            7777777766664322 33334444444444444444444444333222 223334444555555666666666666655


Q ss_pred             HhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCCCccccccccccCCCChhh
Q 006615          269 RDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKA  348 (638)
Q Consensus       269 ~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (638)
                      .............+...+...|++++|...++..                                              
T Consensus       162 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a----------------------------------------------  195 (388)
T d1w3ba_         162 IETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKA----------------------------------------------  195 (388)
T ss_dssp             HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH----------------------------------------------
T ss_pred             hccCcchhHHHHhhcccccccCcHHHHHHHHHHH----------------------------------------------
Confidence            5433222222234445555566666666555543                                              


Q ss_pred             HHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHH
Q 006615          349 LANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRL  428 (638)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l  428 (638)
                                                                      ....  +-+...|..+...+...|++++|...
T Consensus       196 ------------------------------------------------l~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~  225 (388)
T d1w3ba_         196 ------------------------------------------------VTLD--PNFLDAYINLGNVLKEARIFDRAVAA  225 (388)
T ss_dssp             ------------------------------------------------HHHC--TTCHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred             ------------------------------------------------HHhC--cccHHHHHHHhhhhhccccHHHHHHH
Confidence                                                            2111  22456677788888888888888888


Q ss_pred             HHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 006615          429 IAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIF  508 (638)
Q Consensus       429 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~  508 (638)
                      +......+.. +...+..+...|.+.|++++|...|++..+.     .|+...+|..+...+...|+.++|.+.++....
T Consensus       226 ~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  299 (388)
T d1w3ba_         226 YLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIEL-----QPHFPDAYCNLANALKEKGSVAEAEDCYNTALR  299 (388)
T ss_dssp             HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHhHHHhhh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhc
Confidence            8887776543 5667777778888888888888888887664     334346788888888888888888888888776


Q ss_pred             CCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCc
Q 006615          509 SGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWKEGR  588 (638)
Q Consensus       509 ~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~  588 (638)
                      .. +.+...+..+...+...|++++|.+.|++..+.  .|+                      +..++..+..+|.+.|+
T Consensus       300 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~----------------------~~~~~~~la~~~~~~g~  354 (388)
T d1w3ba_         300 LC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEV--FPE----------------------FAAAHSNLASVLQQQGK  354 (388)
T ss_dssp             HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS--CTT----------------------CHHHHHHHHHHHHTTTC
T ss_pred             cC-CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHh--CCC----------------------CHHHHHHHHHHHHHcCC
Confidence            42 346677778888888888888888888887753  333                      35567778888888888


Q ss_pred             HHHHHHHHHHHHHccC
Q 006615          589 RKEAAAVEERCEKIND  604 (638)
Q Consensus       589 ~~~A~~~~~~~~~~~~  604 (638)
                      +++|.+.+++..+.++
T Consensus       355 ~~~A~~~~~~al~l~P  370 (388)
T d1w3ba_         355 LQEALMHYKEAIRISP  370 (388)
T ss_dssp             CHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHHHHHHHhCC
Confidence            8888888888877654

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=7.2e-17  Score=160.56  Aligned_cols=363  Identities=11%  Similarity=0.009  Sum_probs=272.5

Q ss_pred             HHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcC
Q 006615           72 VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSG  151 (638)
Q Consensus        72 ~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g  151 (638)
                      +.+.+-+.|++++|++.|+.+.+..  +-+...+..+..++...|++++|...+++..+.. +.+..++..+...|.+.|
T Consensus         5 la~~~~~~G~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g   81 (388)
T d1w3ba_           5 LAHREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERG   81 (388)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhc
Confidence            4566778899999999999998653  2356678888999999999999999999988753 345678899999999999


Q ss_pred             CHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006615          152 DLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFS  231 (638)
Q Consensus       152 ~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~  231 (638)
                      ++++|...++...... +.+...+..........+....+............. ...............+....+...+.
T Consensus        82 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (388)
T d1w3ba_          82 QLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYL  159 (388)
T ss_dssp             CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred             cccccccccccccccc-cccccccccccccccccccccccccccccccccccc-cccccccccccccccchhhhhHHHHH
Confidence            9999999999998875 344556666666666667777777776666655333 44455556666777788888888877


Q ss_pred             hcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHhCcCcccccc
Q 006615          232 ALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNV  311 (638)
Q Consensus       232 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~  311 (638)
                      ...... +-+...+..+...+...|++++|...+++...........+..+...+...|++++|...++.....      
T Consensus       160 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------  232 (388)
T d1w3ba_         160 KAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL------  232 (388)
T ss_dssp             HHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH------
T ss_pred             HhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHH------
Confidence            766532 2356778888899999999999999999987754222223346667788888888888887765211      


Q ss_pred             ccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChhHHHH
Q 006615          312 RYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWH  391 (638)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  391 (638)
                                                                                                      
T Consensus       233 --------------------------------------------------------------------------------  232 (388)
T d1w3ba_         233 --------------------------------------------------------------------------------  232 (388)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhcc
Q 006615          392 FFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLC  471 (638)
Q Consensus       392 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~  471 (638)
                              .  ..+...+..+...+.+.|++++|...|++..+.... +..++..+...|...|++++|...++..... 
T Consensus       233 --------~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-  300 (388)
T d1w3ba_         233 --------S--PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRL-  300 (388)
T ss_dssp             --------C--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-
T ss_pred             --------h--hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc-
Confidence                    0  224556667777888888888888888887766533 5677778888888888888888888877654 


Q ss_pred             CCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcc-hhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006615          472 GPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPD-VQTFSGLMYHFALQGDEKIVQKLFSMVRQN  544 (638)
Q Consensus       472 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~l~~~m~~~  544 (638)
                          .|+....+..+...+.+.|++++|++.|++..+.  .|+ ..++..+..+|.+.|++++|.+.|++..+.
T Consensus       301 ----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l  368 (388)
T d1w3ba_         301 ----CPTHADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI  368 (388)
T ss_dssp             ----CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred             ----CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence                2333467778888888888888888888888764  454 556777888888888888888888888763

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=3.9e-11  Score=115.36  Aligned_cols=100  Identities=9%  Similarity=-0.021  Sum_probs=83.2

Q ss_pred             cCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHH
Q 006615          403 THDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLL  482 (638)
Q Consensus       403 ~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  482 (638)
                      ..+...+..+...+...|++++|...+++....... +...+..+...|.+.|++++|.+.|+...+.     .|+...+
T Consensus       169 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~~a  242 (323)
T d1fcha_         169 SIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALEL-----QPGYIRS  242 (323)
T ss_dssp             SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHH
T ss_pred             ccccccchhhHHHHHHHHHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHHHHHHHH-----hhccHHH
Confidence            446677788888889999999999999998876543 5778888889999999999999999988765     4455578


Q ss_pred             HHHHHHHHHccCChHHHHHHHHHHHh
Q 006615          483 YSSLLRTLTKCKRDFDAINVLEEMIF  508 (638)
Q Consensus       483 ~~~li~~~~~~g~~~~A~~l~~~m~~  508 (638)
                      |..+...|.+.|++++|++.|++.++
T Consensus       243 ~~~lg~~~~~~g~~~~A~~~~~~al~  268 (323)
T d1fcha_         243 RYNLGISCINLGAHREAVEHFLEALN  268 (323)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            88899999999999999999998776

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=3.7e-10  Score=108.32  Aligned_cols=228  Identities=12%  Similarity=0.030  Sum_probs=178.8

Q ss_pred             HHHHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHh
Q 006615           70 FIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYST  149 (638)
Q Consensus        70 ~~~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~  149 (638)
                      +-....+.+.|++++|+..|+.+.+..  +-+...|..+..++...|+++.|...+.+..+.. +.+...+..+...|..
T Consensus        23 ~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~   99 (323)
T d1fcha_          23 FEEGLRRLQEGDLPNAVLLFEAAVQQD--PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTN   99 (323)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccc
Confidence            335567889999999999999998764  3356689999999999999999999999988753 3456778889999999


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCCH----------------HhHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHH
Q 006615          150 SGDLELVLSTWNEYRQRAKLLST----------------ESYNIVMSVYAKTGKNFEAVETFRQVIDEG-AIPNSRTYTV  212 (638)
Q Consensus       150 ~g~~~~A~~l~~~m~~~~~~p~~----------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~ty~~  212 (638)
                      .|++++|.+.+++.....  |+.                ......+..+...+.+.+|.+.|.+..+.. -.++..++..
T Consensus       100 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~  177 (323)
T d1fcha_         100 ESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCG  177 (323)
T ss_dssp             TTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHH
T ss_pred             cccccccccchhhHHHhc--cchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchh
Confidence            999999999999987643  211                111122334455567888999998887643 2346778888


Q ss_pred             HHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCh
Q 006615          213 MIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFI  292 (638)
Q Consensus       213 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~  292 (638)
                      +...+...|++++|...|++..... +-+..+|..+...|.+.|++++|.+.|++..+....-...++.+...|.+.|++
T Consensus       178 l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~  256 (323)
T d1fcha_         178 LGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAH  256 (323)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred             hHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCH
Confidence            8899999999999999999987642 235778999999999999999999999999875432223445888999999999


Q ss_pred             HHHHHHHHHhC
Q 006615          293 QGANEFLREML  303 (638)
Q Consensus       293 ~~a~~~~~~~~  303 (638)
                      ++|...|++..
T Consensus       257 ~~A~~~~~~al  267 (323)
T d1fcha_         257 REAVEHFLEAL  267 (323)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998864

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.92  E-value=6.4e-07  Score=86.06  Aligned_cols=137  Identities=12%  Similarity=0.042  Sum_probs=95.2

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC--CHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhH
Q 006615          406 VYALEKMLTILARHGHVELVDRLIAKLRSD----GMRL--PFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKL  479 (638)
Q Consensus       406 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  479 (638)
                      ...+..+...+...++...+...+......    +..+  ....+..+...+...|+.+.|...++........... ..
T Consensus       172 ~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~  250 (366)
T d1hz4a_         172 LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNH-FL  250 (366)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCG-GG
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccch-HH
Confidence            344555566667777777777776654431    1111  1233455566778889999999999887665433222 22


Q ss_pred             HHHHHHHHHHHHccCChHHHHHHHHHHHh----CCCCcc-hhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006615          480 MLLYSSLLRTLTKCKRDFDAINVLEEMIF----SGIVPD-VQTFSGLMYHFALQGDEKIVQKLFSMVRQ  543 (638)
Q Consensus       480 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~-~~t~~~li~~~~~~g~~~~a~~l~~~m~~  543 (638)
                      ...+..+...+...|++++|.+.+++...    .+..|+ ..++..+-..|...|++++|.+.+++..+
T Consensus       251 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~  319 (366)
T d1hz4a_         251 QGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK  319 (366)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            35677788899999999999999998764    355554 45677788899999999999999988765

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.88  E-value=4.5e-07  Score=87.19  Aligned_cols=126  Identities=10%  Similarity=-0.033  Sum_probs=66.8

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHcccCCHHHHHHHHHhchhccC-CCcchhHHHHHHH
Q 006615          410 EKMLTILARHGHVELVDRLIAKLRSDGMRL---PFSTIRLIIDFYGISKKADAALKAFHDDRTLCG-PISKFKLMLLYSS  485 (638)
Q Consensus       410 ~~li~~~~~~g~~~~a~~l~~~m~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~  485 (638)
                      ......+...|+++.|...+..........   ....+..+..+|...|++++|...++....... ....|+...++..
T Consensus       217 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  296 (366)
T d1hz4a_         217 KVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLL  296 (366)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHH
Confidence            334444555566666665555544322211   123334455556666666666666665432211 1223444567777


Q ss_pred             HHHHHHccCChHHHHHHHHHHHhC----CCCc----chhhHHHHHHHHHccCCHHHHH
Q 006615          486 LLRTLTKCKRDFDAINVLEEMIFS----GIVP----DVQTFSGLMYHFALQGDEKIVQ  535 (638)
Q Consensus       486 li~~~~~~g~~~~A~~l~~~m~~~----g~~p----~~~t~~~li~~~~~~g~~~~a~  535 (638)
                      +...|.+.|+.++|.+.+++..+.    |...    ....+..++..+...++.+++.
T Consensus       297 la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e  354 (366)
T d1hz4a_         297 LNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELE  354 (366)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHH
Confidence            888888888888888888876542    2211    1122334445555555555543

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.88  E-value=2.8e-07  Score=86.92  Aligned_cols=217  Identities=11%  Similarity=0.068  Sum_probs=157.8

Q ss_pred             hHHHHHHHHHHcCCCCCCChhHHHHHHHHHHh--------------cCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHH
Q 006615           83 DSALSIMEALKSNPNFSHNQSTLHALATVLAK--------------SQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYS  148 (638)
Q Consensus        83 ~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~--------------~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~  148 (638)
                      +.+..+|+++....  +.++..|...+..+..              .+..+++..++++..+...+.+...|...+..+.
T Consensus        33 ~Rv~~vyerAl~~~--~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~  110 (308)
T d2onda1          33 KRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE  110 (308)
T ss_dssp             HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            45666777776543  2334455555554432              2345788889998887655566677888889999


Q ss_pred             hcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHHcCCHHHHH
Q 006615          149 TSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH-LVNLGKLDSAL  227 (638)
Q Consensus       149 ~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~-~~~~g~~~~A~  227 (638)
                      +.|+++.|..+|+++...........|...+..+.+.|++++|.++|++..+.+.. +...|...... +...|+.+.|.
T Consensus       111 ~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~  189 (308)
T d2onda1         111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAF  189 (308)
T ss_dssp             HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHH
T ss_pred             hcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHH
Confidence            99999999999999987643333557999999999999999999999999886432 34444443333 33468999999


Q ss_pred             HHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCC-CCCCH--HHH-HHHHHHHHcCChHHHHHHHHHhC
Q 006615          228 EVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG-KFPGR--AMR-VALERMQEMGFIQGANEFLREML  303 (638)
Q Consensus       228 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~--~~~-~ll~~~~~~g~~~~a~~~~~~~~  303 (638)
                      ++|+.+.+. ...+...|...++.+.+.|+++.|..+|++..... ..|..  ..+ ..+.--...|+.+.+..+++++.
T Consensus       190 ~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~  268 (308)
T d2onda1         190 KIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF  268 (308)
T ss_dssp             HHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            999998864 23457789999999999999999999999987754 34432  223 44444467799999999988763

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=5.2e-07  Score=85.16  Aligned_cols=133  Identities=7%  Similarity=0.003  Sum_probs=88.6

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006615          139 NFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTG-KNFEAVETFRQVIDEGAIPNSRTYTVMIEHL  217 (638)
Q Consensus       139 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~  217 (638)
                      .++.+-..+.+.+..++|+.+++++.+.+ +-+..+|+....++...| ++++|++.++...+.... +..+|+.+...+
T Consensus        45 a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~~~  122 (315)
T d2h6fa1          45 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLV  122 (315)
T ss_dssp             HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhHHH
Confidence            34455556666677777777777777765 345556777776666654 467777777777664322 566777777777


Q ss_pred             HHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC
Q 006615          218 VNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKF  274 (638)
Q Consensus       218 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~  274 (638)
                      .+.|++++|.+.++++.+.. +.+...|+.+...+.+.|++++|++.++++.+.+..
T Consensus       123 ~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~  178 (315)
T d2h6fa1         123 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR  178 (315)
T ss_dssp             HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT
T ss_pred             HhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc
Confidence            77777777777777776532 235667777777777777777777777777665443

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=4.6e-07  Score=85.49  Aligned_cols=222  Identities=11%  Similarity=0.040  Sum_probs=164.2

Q ss_pred             HHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhc
Q 006615           72 VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQ-RNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTS  150 (638)
Q Consensus        72 ~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~  150 (638)
                      +-..+.+.+.+++|+.+++.+.+..  +-+...|+....++...+ ++++|...++...+.. +-+..+|+.+...+.+.
T Consensus        49 ~~~~~~~~e~~~~Al~~~~~ai~ln--P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~~~~l  125 (315)
T d2h6fa1          49 FRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVEWL  125 (315)
T ss_dssp             HHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCchHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHHHHhh
Confidence            4456778899999999999999653  234456788887887766 5899999999987753 45677899999999999


Q ss_pred             CCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC------HH
Q 006615          151 GDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGK------LD  224 (638)
Q Consensus       151 g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~------~~  224 (638)
                      |++++|+..++.+.+.+ +.+..+|+.+...+.+.|++++|++.|++..+.... +...|+.+...+.+.+.      ++
T Consensus       126 ~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~~~~~~  203 (315)
T d2h6fa1         126 RDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRAVLE  203 (315)
T ss_dssp             TCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHHHHH
T ss_pred             ccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccchhhhhH
Confidence            99999999999999875 557899999999999999999999999999996432 67788877766666655      67


Q ss_pred             HHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH-H-HHHHHHHH--cCChHHHHHHHH
Q 006615          225 SALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-R-VALERMQE--MGFIQGANEFLR  300 (638)
Q Consensus       225 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~-~-~ll~~~~~--~g~~~~a~~~~~  300 (638)
                      +|.+.+....+.. +-+...|+.+...+.. ...+++.+.++...+....+.... + .+...+..  .+..+.+...++
T Consensus       204 ~ai~~~~~al~~~-P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~  281 (315)
T d2h6fa1         204 REVQYTLEMIKLV-PHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILN  281 (315)
T ss_dssp             HHHHHHHHHHHHS-TTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHH
T ss_pred             HhHHHHHHHHHhC-CCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            8888888776643 2367778877666554 446788888887766544443332 2 34444433  244344444333

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.77  E-value=8e-07  Score=83.69  Aligned_cols=188  Identities=10%  Similarity=0.077  Sum_probs=148.4

Q ss_pred             CChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHH
Q 006615           80 PNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLST  159 (638)
Q Consensus        80 ~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l  159 (638)
                      +..++|..+|+...+.. .+.+...+...+..+.+.|+++.+..+++++.+........+|...+..+.+.|+++.|.++
T Consensus        78 ~~~~~a~~i~~ral~~~-~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i  156 (308)
T d2onda1          78 LFSDEAANIYERAISTL-LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMI  156 (308)
T ss_dssp             HHHHHHHHHHHHHHTTT-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHH
Confidence            34678999999988642 23455567888888899999999999999998754333455789999999999999999999


Q ss_pred             HHHHHhcCCCCCHHhHHHHHHH-HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccC-C
Q 006615          160 WNEYRQRAKLLSTESYNIVMSV-YAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLM-R  237 (638)
Q Consensus       160 ~~~m~~~~~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~-g  237 (638)
                      |+...+.+ +.+...|...... +...|+.+.|..+|+.+.+. .+-+...|...++...+.|+++.|..+|++..+. +
T Consensus       157 ~~~al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~  234 (308)
T d2onda1         157 FKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS  234 (308)
T ss_dssp             HHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred             HHHHHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence            99998765 3344444444433 34568999999999999986 3336788999999999999999999999997653 2


Q ss_pred             CccC--HhHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006615          238 IKRT--SKQYLILVEGFVGVERFDEAKSLLNEMRD  270 (638)
Q Consensus       238 ~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~  270 (638)
                      ..|+  ...|...+..-...|+.+.+..+++++.+
T Consensus       235 ~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~  269 (308)
T d2onda1         235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT  269 (308)
T ss_dssp             SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3443  45799999988899999999999998855

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.60  E-value=5.8e-07  Score=82.24  Aligned_cols=210  Identities=14%  Similarity=-0.019  Sum_probs=143.3

Q ss_pred             ChhHHHHHHHHHhcCCCCcC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHH
Q 006615          385 SPETAWHFFCWVAYQPGYTH--DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALK  462 (638)
Q Consensus       385 ~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~  462 (638)
                      +.+.++..+.+........+  ...+|..+-.+|.+.|++++|.+.|++..+.... +..+|..+..+|.+.|++++|..
T Consensus        14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~-~~~a~~~lg~~~~~~g~~~~A~~   92 (259)
T d1xnfa_          14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYE   92 (259)
T ss_dssp             HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC-CHHHHhhhchHHHHHHHHHHhhh
Confidence            34445555555544443332  2335777788899999999999999999887644 67889999999999999999999


Q ss_pred             HHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 006615          463 AFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR  542 (638)
Q Consensus       463 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~  542 (638)
                      .|+++.+.     .|+...+|..+...|...|++++|.+.|++..+.. +.+......+..++.+.+..+.+..+.....
T Consensus        93 ~~~~al~~-----~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (259)
T d1xnfa_          93 AFDSVLEL-----DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE  166 (259)
T ss_dssp             HHHHHHHH-----CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             hhhHHHHH-----HhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence            99998876     34444688889999999999999999999998753 2234444444455556666666666666655


Q ss_pred             hCCCCCCHhhHHHHHHHHHHH--------------hhhCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHccC
Q 006615          543 QNGVEPDAYMFKVLIQAYCKY--------------LSNSNLMPD-AATKELLKKSLWKEGRRKEAAAVEERCEKIND  604 (638)
Q Consensus       543 ~~~~~p~~~~~~~li~~~~~~--------------m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~  604 (638)
                      ...-.+.  .++ ++..+...              .......|+ ..+|..+...|...|++++|.+.+++..+.++
T Consensus       167 ~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  240 (259)
T d1xnfa_         167 KSDKEQW--GWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV  240 (259)
T ss_dssp             HSCCCST--HHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred             ccchhhh--hhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence            5432221  111 11111110              001112233 34667788999999999999999999887654

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.57  E-value=3.8e-07  Score=87.21  Aligned_cols=114  Identities=5%  Similarity=-0.080  Sum_probs=71.1

Q ss_pred             hcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcC--ChHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHHcCCHHH
Q 006615          149 TSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTG--KNFEAVETFRQVIDEGAIPNSRTYTVM-IEHLVNLGKLDS  225 (638)
Q Consensus       149 ~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~ty~~l-i~~~~~~g~~~~  225 (638)
                      ..|.+++|+.+++...+.+ +-+...|..+..++...+  ++++|...+.+..+... ++...+... ...+...|..++
T Consensus        85 ~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~  162 (334)
T d1dcea1          85 SAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAE  162 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHH
T ss_pred             HHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCc-hhhhhhhhHHHHHHHhccccHH
Confidence            3445677777777777654 345666666666666554  46777777777776422 244444333 345556677777


Q ss_pred             HHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHH
Q 006615          226 ALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLL  265 (638)
Q Consensus       226 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~  265 (638)
                      |.+.++...+.. +-+...|+.+...+.+.|++++|...+
T Consensus       163 Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~~~  201 (334)
T d1dcea1         163 ELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQG  201 (334)
T ss_dssp             HHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred             HHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            887777776653 235667777777777777776654433

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.56  E-value=1.1e-06  Score=80.20  Aligned_cols=195  Identities=8%  Similarity=-0.046  Sum_probs=133.0

Q ss_pred             HHHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhc
Q 006615           71 IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTS  150 (638)
Q Consensus        71 ~~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~  150 (638)
                      .....+.+.|++++|+..|+...+..  +-+..+|+.+..++.+.|++++|...|++..+.. +.+...+..+..+|...
T Consensus        42 ~~G~~y~~~g~~~~A~~~~~~al~l~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~  118 (259)
T d1xnfa_          42 ERGVLYDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYG  118 (259)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHT
T ss_pred             HHHHHHHHCCCHHHHHHHHHHhhccC--CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHHHHHH
Confidence            35678889999999999999988653  2356688999999999999999999999988753 33456788888999999


Q ss_pred             CCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc----CCHHHH
Q 006615          151 GDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL----GKLDSA  226 (638)
Q Consensus       151 g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~----g~~~~A  226 (638)
                      |++++|...|+...+.. +.+......+..++.+.+..+.+..+.......  .++...++. +..+...    +..+.+
T Consensus       119 g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~  194 (259)
T d1xnfa_         119 GRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS--DKEQWGWNI-VEFYLGNISEQTLMERL  194 (259)
T ss_dssp             TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS--CCCSTHHHH-HHHHTTSSCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc--chhhhhhhH-HHHHHHHHHHHHHHHHH
Confidence            99999999999998875 334555544555556666666666666655553  222222222 2222211    122223


Q ss_pred             HHHHHhcccCCCcc-CHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC
Q 006615          227 LEVFSALPLMRIKR-TSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKF  274 (638)
Q Consensus       227 ~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~  274 (638)
                      ...+.....  ..| ...+|..+...|...|++++|.+.|++.....+.
T Consensus       195 ~~~~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  241 (259)
T d1xnfa_         195 KADATDNTS--LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH  241 (259)
T ss_dssp             HHHCCSHHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT
T ss_pred             HHHHHHhhh--cCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence            222222111  122 2346777889999999999999999998875543

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.56  E-value=5e-07  Score=86.33  Aligned_cols=273  Identities=9%  Similarity=-0.052  Sum_probs=164.8

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH----------HHhcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 006615          143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSV----------YAKTGKNFEAVETFRQVIDEGAIPNSRTYTV  212 (638)
Q Consensus       143 ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~----------~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~  212 (638)
                      ++....+.+..++|+++++...+.+ +-+...|+..-..          +...|.+++|+.+++...+...+ +...|..
T Consensus        35 ~~~~~~~~~~~~~al~~~~~~l~~~-P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk-~~~~~~~  112 (334)
T d1dcea1          35 VFQKRQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHH  112 (334)
T ss_dssp             HHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred             HHHHHhcccccHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCC-cHHHHHH
Confidence            3333333344578888888888765 2233445443322          22334578889999988875322 5666776


Q ss_pred             HHHHHHHcC--CHHHHHHHHHhcccCCCccCHhHHHHH-HHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 006615          213 MIEHLVNLG--KLDSALEVFSALPLMRIKRTSKQYLIL-VEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEM  289 (638)
Q Consensus       213 li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~l-i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~  289 (638)
                      +..++...+  ++++|...+....+.. .++...|... ...+...+.+++|+..+++....+......++.+...+.+.
T Consensus       113 ~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~  191 (334)
T d1dcea1         113 RCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL  191 (334)
T ss_dssp             HHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHH
T ss_pred             hhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence            766666655  4788988888877642 2345555444 36667789999999999888776654444455666667777


Q ss_pred             CChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCc
Q 006615          290 GFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKF  369 (638)
Q Consensus       290 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (638)
                      |++++|...++..                                                                   
T Consensus       192 ~~~~~A~~~~~~~-------------------------------------------------------------------  204 (334)
T d1dcea1         192 HPQPDSGPQGRLP-------------------------------------------------------------------  204 (334)
T ss_dssp             SCCCCSSSCCSSC-------------------------------------------------------------------
T ss_pred             cCHHHHHHHHHHh-------------------------------------------------------------------
Confidence            7766543322111                                                                   


Q ss_pred             ccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006615          370 VWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIID  449 (638)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~  449 (638)
                                          .+.+.          +   .......+...+..+++...+........ ++...+..+..
T Consensus       205 --------------------~~~~~----------~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~-~~~~~~~~l~~  250 (334)
T d1dcea1         205 --------------------ENVLL----------K---ELELVQNAFFTDPNDQSAWFYHRWLLGRA-EPLFRCELSVE  250 (334)
T ss_dssp             --------------------HHHHH----------H---HHHHHHHHHHHCSSCSHHHHHHHHHHSCC-CCSSSCCCCHH
T ss_pred             --------------------HHhHH----------H---HHHHHHHHHHhcchhHHHHHHHHHHHhCc-chhhHHHHHHH
Confidence                                00000          0   11122334445666666666666655442 23344455556


Q ss_pred             HHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcch-hhHHHHHHHHH
Q 006615          450 FYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDV-QTFSGLMYHFA  526 (638)
Q Consensus       450 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~li~~~~  526 (638)
                      .+...++.++|...+.+....     .|+...+|..+...+.+.|+.++|.+.|+...+.  .|+. .-|+.|...+.
T Consensus       251 ~~~~~~~~~~a~~~~~~~~~~-----~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l--dP~~~~y~~~L~~~~~  321 (334)
T d1dcea1         251 KSTVLQSELESCKELQELEPE-----NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV--DPMRAAYLDDLRSKFL  321 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHHhh-----CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CcccHHHHHHHHHHHh
Confidence            666677777777777766543     4555677777888888888888888888888774  5643 34444444433

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.28  E-value=0.0016  Score=60.30  Aligned_cols=176  Identities=10%  Similarity=0.065  Sum_probs=110.2

Q ss_pred             CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHH
Q 006615          100 HNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVM  179 (638)
Q Consensus       100 ~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li  179 (638)
                      |+..--..+...|.+.|.++.|..+|..+..         |..++..+.+.++++.|.+++...   +   +..+|..+.
T Consensus        12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~---~---~~~~~k~~~   76 (336)
T d1b89a_          12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKA---N---STRTWKEVC   76 (336)
T ss_dssp             C----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHH---T---CHHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHc---C---CHHHHHHHH
Confidence            4555566778888899999999999986654         778888889999999988877644   2   367888888


Q ss_pred             HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHH
Q 006615          180 SVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD  259 (638)
Q Consensus       180 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~  259 (638)
                      .++.+.....-|     .+...+...+......++..|-..|..++...+++..... -.++...++-++..|++.+. +
T Consensus        77 ~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~~-~  149 (336)
T d1b89a_          77 FACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFKP-Q  149 (336)
T ss_dssp             HHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTCH-H
T ss_pred             HHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhCh-H
Confidence            888887766443     2333334456667778899999999999999999876532 14567788899999988753 4


Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHh
Q 006615          260 EAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREM  302 (638)
Q Consensus       260 ~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~  302 (638)
                      +..+.+...  .+ .-+  .-.++..|.+.+.++++.-++..+
T Consensus       150 kl~e~l~~~--s~-~y~--~~k~~~~c~~~~l~~elv~Ly~~~  187 (336)
T d1b89a_         150 KMREHLELF--WS-RVN--IPKVLRAAEQAHLWAELVFLYDKY  187 (336)
T ss_dssp             HHHHHHHHH--ST-TSC--HHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred             HHHHHHHhc--cc-cCC--HHHHHHHHHHcCChHHHHHHHHhc
Confidence            444444332  11 111  123456677777777766666555

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.27  E-value=1.3e-05  Score=74.26  Aligned_cols=168  Identities=8%  Similarity=-0.076  Sum_probs=116.4

Q ss_pred             HHHHhccCChhHHHHHHHHHhcCC---CCcC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCC-CCHHHHHHH
Q 006615          377 CKVLRHFKSPETAWHFFCWVAYQP---GYTH-DVYALEKMLTILARHGHVELVDRLIAKLRSD----GMR-LPFSTIRLI  447 (638)
Q Consensus       377 ~~~~~~~~~~~~a~~~~~~~~~~~---~~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g~~-~~~~~~~~l  447 (638)
                      +.++...+++++|.+.|.......   +-.+ ...+|..+..+|.+.|++++|.+.+++....    |.. ....++..+
T Consensus        44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l  123 (290)
T d1qqea_          44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL  123 (290)
T ss_dssp             HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence            566777889999998888775422   1112 2357888999999999999999999876532    211 113445556


Q ss_pred             HHHH-cccCCHHHHHHHHHhchhccCCCc-chhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcch------hhHH
Q 006615          448 IDFY-GISKKADAALKAFHDDRTLCGPIS-KFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDV------QTFS  519 (638)
Q Consensus       448 i~~~-~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~------~t~~  519 (638)
                      ...| ...|++++|...+++..+...... .+....+|..+...+.+.|++++|.+.|++..........      ..+.
T Consensus       124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (290)
T d1qqea_         124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL  203 (290)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred             HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHH
Confidence            6666 456999999999988765422222 2222467888999999999999999999998875322111      1233


Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHhC
Q 006615          520 GLMYHFALQGDEKIVQKLFSMVRQN  544 (638)
Q Consensus       520 ~li~~~~~~g~~~~a~~l~~~m~~~  544 (638)
                      ..+..+...|+++.|.+.++...+.
T Consensus       204 ~~~~~~l~~~d~~~A~~~~~~~~~~  228 (290)
T d1qqea_         204 KKGLCQLAATDAVAAARTLQEGQSE  228 (290)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHh
Confidence            4455667789999999999988764

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=2.8e-05  Score=66.78  Aligned_cols=128  Identities=15%  Similarity=0.032  Sum_probs=95.8

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHc
Q 006615          413 LTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTK  492 (638)
Q Consensus       413 i~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~  492 (638)
                      -..+...|+++.|++.|.++    ..|+..++..+..+|...|++++|.+.|++..+.     +|+.+..|..+..+|.+
T Consensus        12 g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l-----dp~~~~a~~~~g~~~~~   82 (192)
T d1hh8a_          12 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR-----DKHLAVAYFQRGMLYYQ   82 (192)
T ss_dssp             HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHH-----hhhhhhhHHHHHHHHHh
Confidence            34567788888888888764    3456777888888888888999999888888765     45556788888889999


Q ss_pred             cCChHHHHHHHHHHHhCCC--------------Ccc-hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 006615          493 CKRDFDAINVLEEMIFSGI--------------VPD-VQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPD  549 (638)
Q Consensus       493 ~g~~~~A~~l~~~m~~~g~--------------~p~-~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~  549 (638)
                      .|++++|++.|++.....-              .++ ..++..+-.++.+.|++++|.+.++...+....|.
T Consensus        83 ~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~  154 (192)
T d1hh8a_          83 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR  154 (192)
T ss_dssp             TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred             hccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcc
Confidence            9999999998888765311              011 23455667788899999999999998887644443

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.21  E-value=9.9e-05  Score=68.12  Aligned_cols=215  Identities=12%  Similarity=0.011  Sum_probs=116.3

Q ss_pred             ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccC----CCcc-CHhHHHHHHHHHHccCCHHHH
Q 006615          187 KNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLM----RIKR-TSKQYLILVEGFVGVERFDEA  261 (638)
Q Consensus       187 ~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A  261 (638)
                      ++++|.++|.+.               ...|...|++++|.+.|.+..+.    +-.+ -..+|+.+..+|.+.|++++|
T Consensus        32 ~~~~Aa~~y~~a---------------a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A   96 (290)
T d1qqea_          32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA   96 (290)
T ss_dssp             HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHHHHH---------------HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHH
Confidence            456676666554               34577778888888877765431    1112 235778888888889999999


Q ss_pred             HHHHHHHHhCCCCC---CH--HHH-HHHHHHH-HcCChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCCCccc
Q 006615          262 KSLLNEMRDDGKFP---GR--AMR-VALERMQ-EMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRI  334 (638)
Q Consensus       262 ~~l~~~m~~~g~~p---~~--~~~-~ll~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (638)
                      .+.+++....-...   ..  ..+ .+...|. ..|++++|...+++...                              
T Consensus        97 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~------------------------------  146 (290)
T d1qqea_          97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGE------------------------------  146 (290)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH------------------------------
T ss_pred             HHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHH------------------------------
Confidence            88888764321111   11  111 2333343 34667777666655410                              


Q ss_pred             cccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcC-CHHHHHHHH
Q 006615          335 AYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTH-DVYALEKML  413 (638)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li  413 (638)
                                                                               ++.    ..+..+ -..++..+.
T Consensus       147 ---------------------------------------------------------l~~----~~~~~~~~~~~~~~la  165 (290)
T d1qqea_         147 ---------------------------------------------------------WYA----QDQSVALSNKCFIKCA  165 (290)
T ss_dssp             ---------------------------------------------------------HHH----HTTCHHHHHHHHHHHH
T ss_pred             ---------------------------------------------------------HHH----hcCchhhhhhHHHHHH
Confidence                                                                     000    001111 123466778


Q ss_pred             HHHHhcCChHHHHHHHHHHHHcCCCCC-----H-HHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHH
Q 006615          414 TILARHGHVELVDRLIAKLRSDGMRLP-----F-STIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLL  487 (638)
Q Consensus       414 ~~~~~~g~~~~a~~l~~~m~~~g~~~~-----~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li  487 (638)
                      ..+...|++++|.+.|++.........     . ..+...+..+...|+++.|...++...+..+.............++
T Consensus       166 ~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~  245 (290)
T d1qqea_         166 DLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLI  245 (290)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHH
T ss_pred             HHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHH
Confidence            888888888888888888765432211     1 1223344455567777788777777665432222111112334455


Q ss_pred             HHHHc--cCChHHHHHHHHHHH
Q 006615          488 RTLTK--CKRDFDAINVLEEMI  507 (638)
Q Consensus       488 ~~~~~--~g~~~~A~~l~~~m~  507 (638)
                      .++-.  .+.+++|+.-|+++.
T Consensus       246 ~a~~~~d~e~~~eai~~y~~~~  267 (290)
T d1qqea_         246 DAVNEGDSEQLSEHCKEFDNFM  267 (290)
T ss_dssp             HHHHTTCTTTHHHHHHHHTTSS
T ss_pred             HHHHhcCHHHHHHHHHHHHHHh
Confidence            55444  234556666555443

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=7.5e-05  Score=63.99  Aligned_cols=131  Identities=11%  Similarity=-0.080  Sum_probs=104.2

Q ss_pred             HHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCC
Q 006615          377 CKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKK  456 (638)
Q Consensus       377 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~  456 (638)
                      +..+...+++++|++.|..+.     .|+...|..+-.+|...|++++|.+.|++.++.... +...|..+..+|.+.|+
T Consensus        12 g~~~~~~~d~~~Al~~~~~i~-----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~~~g~   85 (192)
T d1hh8a_          12 GVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEK   85 (192)
T ss_dssp             HHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHCCCHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHhhcc
Confidence            455567899999999998642     567888999999999999999999999999987754 67889999999999999


Q ss_pred             HHHHHHHHHhchhccCC-----------CcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCc
Q 006615          457 ADAALKAFHDDRTLCGP-----------ISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVP  513 (638)
Q Consensus       457 ~~~A~~~~~~~~~~~~~-----------~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p  513 (638)
                      +++|...|++.......           ........++..+..++.+.|++++|.+.|+...+....|
T Consensus        86 ~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~  153 (192)
T d1hh8a_          86 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  153 (192)
T ss_dssp             HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             HHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            99999999986542111           0111112466677888999999999999999998764443

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=0.00014  Score=56.30  Aligned_cols=90  Identities=17%  Similarity=0.129  Sum_probs=50.5

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 006615          144 MQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL  223 (638)
Q Consensus       144 l~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~  223 (638)
                      ...+.+.|++++|...|++..+.+ +-+...|+.+..+|.+.|++++|++.+.+..+.+. .+...|..+..++...|++
T Consensus        10 g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~g~~~~~~~~~   87 (117)
T d1elwa_          10 GNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAALEFLNRF   87 (117)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhcc-chhhHHHHHHHHHHHccCH
Confidence            344555566666666666655543 33455555555666666666666666666555422 2455555555556666666


Q ss_pred             HHHHHHHHhccc
Q 006615          224 DSALEVFSALPL  235 (638)
Q Consensus       224 ~~A~~~~~~m~~  235 (638)
                      ++|...|++..+
T Consensus        88 ~~A~~~~~~a~~   99 (117)
T d1elwa_          88 EEAKRTYEEGLK   99 (117)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHH
Confidence            666666655554

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=6.2e-05  Score=58.47  Aligned_cols=88  Identities=14%  Similarity=-0.076  Sum_probs=39.7

Q ss_pred             HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccC
Q 006615          415 ILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCK  494 (638)
Q Consensus       415 ~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g  494 (638)
                      .+.+.|++++|..+|++..+.... +...|..+..+|.+.|++++|+..+....+.     .|+....|..+..++...|
T Consensus        12 ~~~~~g~~~eAi~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~g~~~~~~~   85 (117)
T d1elwa_          12 KALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL-----KPDWGKGYSRKAAALEFLN   85 (117)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCc-chhhhhcccccccccccccccchhhhhHHHh-----ccchhhHHHHHHHHHHHcc
Confidence            344455555555555555444322 3344444444444444444444444444432     2222234444444444444


Q ss_pred             ChHHHHHHHHHHHh
Q 006615          495 RDFDAINVLEEMIF  508 (638)
Q Consensus       495 ~~~~A~~l~~~m~~  508 (638)
                      ++++|+..|++..+
T Consensus        86 ~~~~A~~~~~~a~~   99 (117)
T d1elwa_          86 RFEEAKRTYEEGLK   99 (117)
T ss_dssp             CHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHH
Confidence            44444444444443

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=0.00013  Score=60.27  Aligned_cols=90  Identities=16%  Similarity=0.100  Sum_probs=59.1

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 006615          144 MQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL  223 (638)
Q Consensus       144 l~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~  223 (638)
                      ...|.+.|++++|...|++..+.+ +-+...|..+..+|...|++++|.+.|+...+... -+..+|..+..+|...|++
T Consensus        17 gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p-~~~~a~~~~g~~~~~~g~~   94 (159)
T d1a17a_          17 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGKF   94 (159)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcc-cchHHHHHHHHHHHHcCCH
Confidence            445667777777777777776664 44566666666777777777777777777766421 1456666666777777777


Q ss_pred             HHHHHHHHhccc
Q 006615          224 DSALEVFSALPL  235 (638)
Q Consensus       224 ~~A~~~~~~m~~  235 (638)
                      ++|.+.|++..+
T Consensus        95 ~eA~~~~~~a~~  106 (159)
T d1a17a_          95 RAALRDYETVVK  106 (159)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            777777766655

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.94  E-value=4.8e-05  Score=65.80  Aligned_cols=99  Identities=10%  Similarity=-0.122  Sum_probs=84.5

Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHH
Q 006615          404 HDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLY  483 (638)
Q Consensus       404 p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~  483 (638)
                      |+...+...-..|.+.|++++|+..|.+....... +...|..+..+|.+.|++++|...|+...+.     .|+.+.+|
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~-~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l-----~p~~~~a~   75 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALEL-----DGQSVKAH   75 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-----CTTCHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHh-----CCCcHHHH
Confidence            56666677778899999999999999998877644 7788899999999999999999999998765     56656789


Q ss_pred             HHHHHHHHccCChHHHHHHHHHHHh
Q 006615          484 SSLLRTLTKCKRDFDAINVLEEMIF  508 (638)
Q Consensus       484 ~~li~~~~~~g~~~~A~~l~~~m~~  508 (638)
                      ..+..+|.+.|++++|+..|++..+
T Consensus        76 ~~lg~~~~~l~~~~~A~~~~~~al~  100 (201)
T d2c2la1          76 FFLGQCQLEMESYDEAIANLQRAYS  100 (201)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            9999999999999999999998776

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.90  E-value=9e-05  Score=64.02  Aligned_cols=97  Identities=16%  Similarity=0.074  Sum_probs=50.9

Q ss_pred             CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCcc-CHhHHHHH
Q 006615          170 LSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKR-TSKQYLIL  248 (638)
Q Consensus       170 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l  248 (638)
                      |++..+......|.+.|++++|+..|.+..+.. +-+...|..+..+|.+.|++++|.+.|+...+.  .| +..+|..+
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l--~p~~~~a~~~l   78 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFL   78 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHh--CCCcHHHHHHH
Confidence            344444445555555555555555555555432 114445555555555555555555555555442  23 34455555


Q ss_pred             HHHHHccCCHHHHHHHHHHHH
Q 006615          249 VEGFVGVERFDEAKSLLNEMR  269 (638)
Q Consensus       249 i~~~~~~g~~~~A~~l~~~m~  269 (638)
                      ..+|.+.|++++|+..|++..
T Consensus        79 g~~~~~l~~~~~A~~~~~~al   99 (201)
T d2c2la1          79 GQCQLEMESYDEAIANLQRAY   99 (201)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHH
Confidence            555555566666655555543

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=0.00015  Score=59.94  Aligned_cols=93  Identities=10%  Similarity=-0.147  Sum_probs=76.7

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHH
Q 006615          411 KMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTL  490 (638)
Q Consensus       411 ~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~  490 (638)
                      ..-..|.+.|++++|...|++..+.... +...|..+..+|...|++++|...|+...+.     .|+...+|..+..+|
T Consensus        15 ~~gn~~~~~~~y~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~-----~p~~~~a~~~~g~~~   88 (159)
T d1a17a_          15 TQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIEL-----DKKYIKGYYRRAASN   88 (159)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHhhhccccchh-hhhhhhhhHHHHHhccccchHHHHHHHHHHH-----cccchHHHHHHHHHH
Confidence            3455678899999999999998887644 6788888888899999999999999988765     455557888888999


Q ss_pred             HccCChHHHHHHHHHHHhC
Q 006615          491 TKCKRDFDAINVLEEMIFS  509 (638)
Q Consensus       491 ~~~g~~~~A~~l~~~m~~~  509 (638)
                      ...|++++|.+.+++....
T Consensus        89 ~~~g~~~eA~~~~~~a~~~  107 (159)
T d1a17a_          89 MALGKFRAALRDYETVVKV  107 (159)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHc
Confidence            9999999999999988875

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=0.0001  Score=57.48  Aligned_cols=92  Identities=11%  Similarity=0.067  Sum_probs=37.7

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCCh---HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH
Q 006615          143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKN---FEAVETFRQVIDEGAIPN-SRTYTVMIEHLV  218 (638)
Q Consensus       143 ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~p~-~~ty~~li~~~~  218 (638)
                      |++.+...+++++|.+.|+.....+ +.+..++..+..++.+.++.   ++|+++|++....+..|+ ..++..+..+|.
T Consensus         5 l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~   83 (122)
T d1nzna_           5 VLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY   83 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence            3444444444444444444444433 23344444444444433222   234444444443222121 123333444444


Q ss_pred             HcCCHHHHHHHHHhccc
Q 006615          219 NLGKLDSALEVFSALPL  235 (638)
Q Consensus       219 ~~g~~~~A~~~~~~m~~  235 (638)
                      +.|++++|.+.|++..+
T Consensus        84 ~~g~~~~A~~~~~~aL~  100 (122)
T d1nzna_          84 RLKEYEKALKYVRGLLQ  100 (122)
T ss_dssp             HTTCHHHHHHHHHHHHH
T ss_pred             HHhhhHHHHHHHHHHHH
Confidence            44444444444444443

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.70  E-value=0.00022  Score=54.62  Aligned_cols=88  Identities=11%  Similarity=-0.011  Sum_probs=49.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 006615          143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGK  222 (638)
Q Consensus       143 ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~  222 (638)
                      +...+.+.|++++|...|++....+ +-+..+|..+..++.+.|++++|...|++..+... -+..++..+...|...|+
T Consensus        22 ~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~la~~y~~~g~   99 (112)
T d1hxia_          22 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTNEHN   99 (112)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhccccccccccc-ccccchHHHHHHHHHCCC
Confidence            3444555666666666666665543 22455566666666666666666666666555321 135555555555666666


Q ss_pred             HHHHHHHHHh
Q 006615          223 LDSALEVFSA  232 (638)
Q Consensus       223 ~~~A~~~~~~  232 (638)
                      +++|.+.+++
T Consensus       100 ~~~A~~~l~~  109 (112)
T d1hxia_         100 ANAALASLRA  109 (112)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            6666655554

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.69  E-value=0.00013  Score=56.12  Aligned_cols=89  Identities=12%  Similarity=-0.005  Sum_probs=61.8

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHH
Q 006615          412 MLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLT  491 (638)
Q Consensus       412 li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~  491 (638)
                      +...+.+.|++++|...|++....... +...|..+..+|.+.|++++|...|+...+.     .|+...+|..+...|.
T Consensus        22 ~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~~a~~~la~~y~   95 (112)
T d1hxia_          22 EGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARML-----DPKDIAVHAALAVSHT   95 (112)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhccccccccc-----ccccccchHHHHHHHH
Confidence            444567778888888888887766543 5667777777777777777777777776654     3444466777777777


Q ss_pred             ccCChHHHHHHHHHH
Q 006615          492 KCKRDFDAINVLEEM  506 (638)
Q Consensus       492 ~~g~~~~A~~l~~~m  506 (638)
                      ..|+.++|++.|++.
T Consensus        96 ~~g~~~~A~~~l~~~  110 (112)
T d1hxia_          96 NEHNANAALASLRAW  110 (112)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHH
Confidence            777777777777664

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=0.00043  Score=53.74  Aligned_cols=99  Identities=11%  Similarity=-0.058  Sum_probs=57.9

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCC---HHHHHHHHHhchhccCCCcchhHHHHHHHHH
Q 006615          411 KMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKK---ADAALKAFHDDRTLCGPISKFKLMLLYSSLL  487 (638)
Q Consensus       411 ~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li  487 (638)
                      .++..+...+++++|.+.|++....+.. +..++..+..++.+.++   +++|+.+|+++...   .+.|+.+.+|..+.
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~-~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~---~~~~~~~~~~~~Lg   79 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAGSV-SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK---GSKEEQRDYVFYLA   79 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT---SCHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc---cCCchHHHHHHHHH
Confidence            4556666677777777777777765533 55666666666655443   33466666665432   12233233555666


Q ss_pred             HHHHccCChHHHHHHHHHHHhCCCCcch
Q 006615          488 RTLTKCKRDFDAINVLEEMIFSGIVPDV  515 (638)
Q Consensus       488 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~  515 (638)
                      .+|.+.|++++|++.|++..+.  .|+.
T Consensus        80 ~~y~~~g~~~~A~~~~~~aL~~--~P~~  105 (122)
T d1nzna_          80 VGNYRLKEYEKALKYVRGLLQT--EPQN  105 (122)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred             HHHHHHhhhHHHHHHHHHHHHh--CcCC
Confidence            6666666666666666666663  4543

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.57  E-value=0.029  Score=51.48  Aligned_cols=115  Identities=13%  Similarity=0.103  Sum_probs=56.0

Q ss_pred             CchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006615          135 NVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMI  214 (638)
Q Consensus       135 ~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li  214 (638)
                      ||..--..+.+.|.+.|.++.|..+|..+.         -|.-++..+.+.++++.|.+++...      -+..+|..+.
T Consensus        12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~   76 (336)
T d1b89a_          12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVC   76 (336)
T ss_dssp             C----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHH
Confidence            343333445566667777777777765442         2555666666677777766665533      1455666666


Q ss_pred             HHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHH
Q 006615          215 EHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMR  269 (638)
Q Consensus       215 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~  269 (638)
                      ..|.+......|.-     ...+...+......++..|-..|.+++...+++...
T Consensus        77 ~~l~~~~e~~la~i-----~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~  126 (336)
T d1b89a_          77 FACVDGKEFRLAQM-----CGLHIVVHADELEELINYYQDRGYFEELITMLEAAL  126 (336)
T ss_dssp             HHHHHTTCHHHHHH-----TTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHhCcHHHHHHH-----HHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            66666555443311     111122344444556666666677776666666553

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.48  E-value=0.015  Score=51.87  Aligned_cols=81  Identities=12%  Similarity=-0.068  Sum_probs=43.1

Q ss_pred             ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcc----cCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHc----
Q 006615          421 HVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGI----SKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTK----  492 (638)
Q Consensus       421 ~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----  492 (638)
                      +...+...++...+.|   +......+-..|..    ..++++|...|....+..    .   +..+..|...|.+    
T Consensus       161 ~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g----~---~~a~~~LG~~y~~G~g~  230 (265)
T d1ouva_         161 DLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE----N---GGGCFNLGAMQYNGEGV  230 (265)
T ss_dssp             CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT----C---HHHHHHHHHHHHTTSSS
T ss_pred             ccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc----C---HHHHHHHHHHHHcCCCC
Confidence            3444555555554444   33333333333322    456777777777765431    1   2455556666654    


Q ss_pred             cCChHHHHHHHHHHHhCCC
Q 006615          493 CKRDFDAINVLEEMIFSGI  511 (638)
Q Consensus       493 ~g~~~~A~~l~~~m~~~g~  511 (638)
                      ..+.++|.+.|++..+.|.
T Consensus       231 ~~n~~~A~~~~~kAa~~g~  249 (265)
T d1ouva_         231 TRNEKQAIENFKKGCKLGA  249 (265)
T ss_dssp             SCCSTTHHHHHHHHHHHTC
T ss_pred             ccCHHHHHHHHHHHHHCcC
Confidence            3366777777777766653

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.43  E-value=0.0011  Score=55.47  Aligned_cols=126  Identities=15%  Similarity=0.109  Sum_probs=84.8

Q ss_pred             CHHHHHHHH---HHHHhcCChHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhH
Q 006615          405 DVYALEKML---TILARHGHVELVDRLIAKLRSD--GMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKL  479 (638)
Q Consensus       405 ~~~~~~~li---~~~~~~g~~~~a~~l~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  479 (638)
                      |...|..+.   ......|++++|.+.|......  |....         .+. .+.+  +...-..+        .+..
T Consensus         7 D~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~---------~~~-~~~w--~~~~r~~l--------~~~~   66 (179)
T d2ff4a2           7 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLD---------DLR-DFQF--VEPFATAL--------VEDK   66 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTG---------GGT-TSTT--HHHHHHHH--------HHHH
T ss_pred             cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccc---------cCc-chHH--HHHHHHHH--------HHHH
Confidence            444444444   4677889999999988887753  21110         000 1111  11111111        1222


Q ss_pred             HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHh-----CCCCCCHh
Q 006615          480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQ-----NGVEPDAY  551 (638)
Q Consensus       480 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~-----~~~~p~~~  551 (638)
                      ...+..+...+.+.|++++|+..++++.+.. +-+...|..++.+|.+.|+.++|++.|+++.+     .|+.|...
T Consensus        67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~  142 (179)
T d2ff4a2          67 VLAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT  142 (179)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred             HHHHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHH
Confidence            4678889999999999999999999998853 23778899999999999999999999998754     35555543

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.32  E-value=0.0031  Score=52.53  Aligned_cols=70  Identities=11%  Similarity=0.159  Sum_probs=52.5

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCCHHH
Q 006615          139 NFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVID-----EGAIPNSRT  209 (638)
Q Consensus       139 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t  209 (638)
                      .+..+...+.+.|++++|...++++...+ +-+...|..++.+|.+.|+.++|++.|+++.+     .|+.|...+
T Consensus        69 a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l  143 (179)
T d2ff4a2          69 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  143 (179)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             HHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence            45667777888888888888888887764 45677788888888888888888888877643     477777654

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.28  E-value=0.0014  Score=51.43  Aligned_cols=57  Identities=14%  Similarity=0.140  Sum_probs=30.1

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006615          143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVID  200 (638)
Q Consensus       143 ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  200 (638)
                      +...|.+.|++++|+..|++..+.+ +.+..+|..+..+|.+.|++++|++.+++..+
T Consensus        10 ~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~   66 (128)
T d1elra_          10 LGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIE   66 (128)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHH
Confidence            4444555555555555555555543 23445555555555555555555555555544

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.23  E-value=0.0032  Score=49.16  Aligned_cols=99  Identities=8%  Similarity=-0.015  Sum_probs=70.7

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCC--CcchhHHHHHHHHH
Q 006615          410 EKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGP--ISKFKLMLLYSSLL  487 (638)
Q Consensus       410 ~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~li  487 (638)
                      -.+-..+.+.|++++|...|.+.++.+.. +...+..+..+|.+.|++++|...++.+.+..+.  ...+....+|..+.
T Consensus         8 k~~G~~~~~~~~y~~Ai~~y~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg   86 (128)
T d1elra_           8 KELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG   86 (128)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence            34556677888888888888888877643 6777888888888888888888888876654221  11223335677777


Q ss_pred             HHHHccCChHHHHHHHHHHHhC
Q 006615          488 RTLTKCKRDFDAINVLEEMIFS  509 (638)
Q Consensus       488 ~~~~~~g~~~~A~~l~~~m~~~  509 (638)
                      ..+...+++++|++.|+.....
T Consensus        87 ~~~~~~~~~~~A~~~~~kal~~  108 (128)
T d1elra_          87 NSYFKEEKYKDAIHFYNKSLAE  108 (128)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHhc
Confidence            7888888888888888776653

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.18  E-value=0.0024  Score=52.93  Aligned_cols=73  Identities=15%  Similarity=-0.033  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCc-chhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 006615          481 LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVP-DVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLI  557 (638)
Q Consensus       481 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li  557 (638)
                      .+|+.+..+|.+.|++++|++.+++.++.  .| +..+|..+..+|...|++++|...|+...+.  .|+.......+
T Consensus        63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~--~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~P~n~~~~~~l  136 (170)
T d1p5qa1          63 ASHLNLAMCHLKLQAFSAAIESCNKALEL--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQL  136 (170)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcccccchhhhhhhc--cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence            45666666777777777777777777664  33 5566666777777777777777777777663  45443333333

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.16  E-value=0.007  Score=49.93  Aligned_cols=60  Identities=10%  Similarity=0.002  Sum_probs=35.2

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006615          140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVID  200 (638)
Q Consensus       140 ~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  200 (638)
                      |+.+..+|.+.|++++|+..++.....+ +.++.+|..+..+|...|++++|...|++..+
T Consensus        65 ~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~  124 (170)
T d1p5qa1          65 HLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQ  124 (170)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            4445555666666666666666655543 33555566666666666666666666666655

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.12  E-value=0.00085  Score=60.10  Aligned_cols=122  Identities=10%  Similarity=0.037  Sum_probs=80.5

Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHH
Q 006615          147 YSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPN-SRTYTVMIEHLVNLGKLDS  225 (638)
Q Consensus       147 ~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~  225 (638)
                      ..+.|++++|+..+++..+.. +-|...+..+...|+..|++++|...|+...+.  .|+ ...+..+...+...+..++
T Consensus         6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--~P~~~~~~~~l~~ll~a~~~~~~   82 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKAAQARKD   82 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHhccccHH
Confidence            346789999999999988875 667888999999999999999999999998874  454 3344444444433333333


Q ss_pred             HHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006615          226 ALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDD  271 (638)
Q Consensus       226 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~  271 (638)
                      +..-...-...+-.++...+......+...|+.++|.++++++.+.
T Consensus        83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~  128 (264)
T d1zbpa1          83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL  128 (264)
T ss_dssp             HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence            3222221111121223334444556677889999999999887654

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.06  E-value=0.0058  Score=49.41  Aligned_cols=125  Identities=9%  Similarity=-0.069  Sum_probs=77.9

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHH
Q 006615          409 LEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLR  488 (638)
Q Consensus       409 ~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~  488 (638)
                      +...-..+.+.|++.+|...|.+....-....             ...-.......           .+-...+|+.+..
T Consensus        20 ~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~-------------~~~~~~~~~~~-----------~~~~~~~~~Nla~   75 (153)
T d2fbna1          20 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTE-------------EWDDQILLDKK-----------KNIEISCNLNLAT   75 (153)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCT-------------TCCCHHHHHHH-----------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCcchh-------------hhhhHHHHHhh-----------hhHHHHHHhhHHH
Confidence            33445567788899999888887764311100             00000000000           0011256777888


Q ss_pred             HHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 006615          489 TLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAY  560 (638)
Q Consensus       489 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~  560 (638)
                      +|.+.|++++|++.+++.++.. +.+..+|..+..++...|++++|...|+...+.  .|+.......+..+
T Consensus        76 ~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l--~P~n~~~~~~l~~~  144 (153)
T d2fbna1          76 CYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYELC  144 (153)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHH
T ss_pred             HHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence            8888888888888888887753 236678888888888888888888888888874  46654444444433

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.03  E-value=0.012  Score=47.41  Aligned_cols=61  Identities=13%  Similarity=0.023  Sum_probs=39.6

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006615          139 NFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVID  200 (638)
Q Consensus       139 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  200 (638)
                      +|+.+..+|.+.|++++|+..+++..+.+ +.++.+|..+..++...|++++|...|++..+
T Consensus        69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~  129 (153)
T d2fbna1          69 CNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAAS  129 (153)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH
Confidence            45556666666667777766666666554 44566666666666666666666666666666

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=96.93  E-value=0.00064  Score=60.94  Aligned_cols=122  Identities=11%  Similarity=-0.000  Sum_probs=73.7

Q ss_pred             HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCCh
Q 006615          417 ARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRD  496 (638)
Q Consensus       417 ~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~  496 (638)
                      .+.|++++|...+++.++.... |...+..+...|+..|++++|...|+...+.     .|+....+..+...+...+..
T Consensus         7 L~~G~l~eAl~~l~~al~~~P~-d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l-----~P~~~~~~~~l~~ll~a~~~~   80 (264)
T d1zbpa1           7 LSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKL-----FPEYLPGASQLRHLVKAAQAR   80 (264)
T ss_dssp             TTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CGGGHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHhcccc
Confidence            3567888888888888777654 6777888888888888888888888887765     444444554444443322222


Q ss_pred             HHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006615          497 FDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQN  544 (638)
Q Consensus       497 ~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~  544 (638)
                      +++..-...-...+-.++...+......+...|+.++|.++++++.+.
T Consensus        81 ~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~  128 (264)
T d1zbpa1          81 KDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL  128 (264)
T ss_dssp             HHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence            222111110000111123334444556677788899998888887764

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.93  E-value=0.0092  Score=49.11  Aligned_cols=61  Identities=8%  Similarity=-0.010  Sum_probs=36.2

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006615          139 NFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVID  200 (638)
Q Consensus       139 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  200 (638)
                      .|..+..+|.+.|++++|+..+++..+.+ +.+..+|..+..+|.+.|++++|++.|++..+
T Consensus        79 ~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~  139 (169)
T d1ihga1          79 CVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQE  139 (169)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHH
Confidence            34445555666666666666666665543 34455566666666666666666666666655

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.92  E-value=0.0053  Score=50.63  Aligned_cols=61  Identities=11%  Similarity=0.187  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006615          209 TYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRD  270 (638)
Q Consensus       209 ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~  270 (638)
                      .|..+..+|.+.|++++|...+.+..+.. +.+..+|..+..+|.+.|++++|++.|++..+
T Consensus        79 ~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~  139 (169)
T d1ihga1          79 CVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQE  139 (169)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHH
Confidence            33344444445555555555555444322 12344444455555555555555555554444

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.80  E-value=0.0021  Score=51.63  Aligned_cols=116  Identities=9%  Similarity=-0.044  Sum_probs=73.8

Q ss_pred             HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcc----------cCCHHHHHHHHHhchhccCCCcchhHHHHHHHH
Q 006615          417 ARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGI----------SKKADAALKAFHDDRTLCGPISKFKLMLLYSSL  486 (638)
Q Consensus       417 ~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~----------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l  486 (638)
                      -+.+.+++|...|+...+..+. +...+..+..+|..          .+.+++|...|+...+.     +|+...+|..+
T Consensus         8 ~r~~~fe~A~~~~e~al~~~P~-~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l-----~P~~~~a~~~l   81 (145)
T d1zu2a1           8 DRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI-----DPKKDEAVWCI   81 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-----CTTCHHHHHHH
T ss_pred             HHHccHHHHHHHHHHHHhhCCc-chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh-----cchhhHHHhhH
Confidence            3445566777777776665533 55555555555543          23457788888877765     45555778888


Q ss_pred             HHHHHccCC-----------hHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 006615          487 LRTLTKCKR-----------DFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGV  546 (638)
Q Consensus       487 i~~~~~~g~-----------~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~  546 (638)
                      ...|...|+           +++|.+.|++..+.  .|+...|..-+..+      .+|.+++.+..+.|+
T Consensus        82 G~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l--~P~~~~~~~~L~~~------~ka~~~~~e~~k~~~  144 (145)
T d1zu2a1          82 GNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMT------AKAPQLHAEAYKQGL  144 (145)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH------HTHHHHHHHHHHSSS
T ss_pred             HHHHHHcccchhhHHHHHHhHHHhhhhhhccccc--CCCHHHHHHHHHHH------HHHHHHHHHHHHHhc
Confidence            777766543           57788888887764  67766665544443      456677777766654

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.78  E-value=0.0037  Score=50.04  Aligned_cols=113  Identities=15%  Similarity=0.091  Sum_probs=55.2

Q ss_pred             hcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhc----------CChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHH
Q 006615          149 TSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKT----------GKNFEAVETFRQVIDEGAIP-NSRTYTVMIEHL  217 (638)
Q Consensus       149 ~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~g~~p-~~~ty~~li~~~  217 (638)
                      +.+.+++|...|+...+.+ +.+..+|..+-.++...          +.+++|+..|++..+.  .| +..+|..+..+|
T Consensus         9 r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l--~P~~~~a~~~lG~~y   85 (145)
T d1zu2a1           9 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGNAY   85 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred             HHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh--cchhhHHHhhHHHHH
Confidence            3444566666666655554 33455555555554432          3345566666666553  23 455555555555


Q ss_pred             HHcC-----------CHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 006615          218 VNLG-----------KLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG  272 (638)
Q Consensus       218 ~~~g-----------~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g  272 (638)
                      ...|           .+++|.+.|++..+  +.|+...|..-+..+      ..|.+++.+..+.|
T Consensus        86 ~~~g~~~~~~~~~~~~~~~A~~~~~kal~--l~P~~~~~~~~L~~~------~ka~~~~~e~~k~~  143 (145)
T d1zu2a1          86 TSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMT------AKAPQLHAEAYKQG  143 (145)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH------HTHHHHHHHHHHSS
T ss_pred             HHcccchhhHHHHHHhHHHhhhhhhcccc--cCCCHHHHHHHHHHH------HHHHHHHHHHHHHh
Confidence            4433           24555555555544  245544444333222      24445555544443

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=96.77  E-value=0.017  Score=47.34  Aligned_cols=63  Identities=10%  Similarity=-0.021  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006615          481 LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQN  544 (638)
Q Consensus       481 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~  544 (638)
                      ..|+.+..+|.+.|++++|+..+++..+.. +.+..+|..+..++...|++++|.+.|+.+.+.
T Consensus        65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l  127 (168)
T d1kt1a1          65 AAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV  127 (168)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred             HHHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            567778888899999999999999988753 346778888889999999999999999998874

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=96.72  E-value=0.016  Score=47.53  Aligned_cols=60  Identities=12%  Similarity=0.064  Sum_probs=39.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006615          140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVID  200 (638)
Q Consensus       140 ~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  200 (638)
                      |+.+..+|.+.|++++|+..++.....+ +.+..+|..+..++...|++++|.+.|.+..+
T Consensus        67 ~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~  126 (168)
T d1kt1a1          67 FLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLE  126 (168)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4445566666777777777777666654 44566666666667777777777777776665

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=96.56  E-value=0.014  Score=47.17  Aligned_cols=94  Identities=10%  Similarity=0.010  Sum_probs=61.9

Q ss_pred             HHcccCCHHHHHHHHHhchhccCCCc-------chhHHHHHHHHHHHHHccCChHHHHHHHHHHHhC-----CCCcc---
Q 006615          450 FYGISKKADAALKAFHDDRTLCGPIS-------KFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFS-----GIVPD---  514 (638)
Q Consensus       450 ~~~~~g~~~~A~~~~~~~~~~~~~~~-------~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g~~p~---  514 (638)
                      .+.+.|++++|+..|.+..+.....+       .+.....|+.+..+|.+.|++++|.+.+++..+.     ...++   
T Consensus        18 ~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~   97 (156)
T d2hr2a1          18 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGK   97 (156)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccc
Confidence            33445555556555555544322221       2223467888888899999999998888887652     11222   


Q ss_pred             --hhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006615          515 --VQTFSGLMYHFALQGDEKIVQKLFSMVRQ  543 (638)
Q Consensus       515 --~~t~~~li~~~~~~g~~~~a~~l~~~m~~  543 (638)
                        ...|+.+-.+|...|++++|.+.|++..+
T Consensus        98 ~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~  128 (156)
T d2hr2a1          98 LWISAVYSRALALDGLGRGAEAMPEFKKVVE  128 (156)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence              22567778899999999999999988764

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=96.39  E-value=0.021  Score=46.10  Aligned_cols=101  Identities=9%  Similarity=-0.088  Sum_probs=71.6

Q ss_pred             HHHHH--HHHHHhcCChHHHHHHHHHHHHcCCC-C----------CHHHHHHHHHHHcccCCHHHHHHHHHhchhccC--
Q 006615          408 ALEKM--LTILARHGHVELVDRLIAKLRSDGMR-L----------PFSTIRLIIDFYGISKKADAALKAFHDDRTLCG--  472 (638)
Q Consensus       408 ~~~~l--i~~~~~~g~~~~a~~l~~~m~~~g~~-~----------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--  472 (638)
                      +|..+  ...+.+.|++++|+..|++..+.... |          ....|+.+..+|.+.|++++|...+++......  
T Consensus         9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~   88 (156)
T d2hr2a1           9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   88 (156)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence            34444  44566778899999888887753211 1          135677888899999999999988888654321  


Q ss_pred             ----CCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 006615          473 ----PISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIF  508 (638)
Q Consensus       473 ----~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~  508 (638)
                          ....+....+|+.+..+|.+.|++++|++.|++..+
T Consensus        89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~  128 (156)
T d2hr2a1          89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  128 (156)
T ss_dssp             CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence                111223335678889999999999999999998765

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.13  E-value=0.027  Score=55.57  Aligned_cols=132  Identities=12%  Similarity=-0.014  Sum_probs=78.3

Q ss_pred             CChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHH
Q 006615          420 GHVELVDRLIAKLRSDGMRL-PFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFD  498 (638)
Q Consensus       420 g~~~~a~~l~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~  498 (638)
                      +.++.+...+....+  +.| +...+..+...+.+.|+.+.|...+.....       ++...++..+...+...|++++
T Consensus       100 ~~Y~~ai~~l~~~~~--l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~-------~~~~~~~~~LG~l~~~~~~~~~  170 (497)
T d1ya0a1         100 GFYTQLLQELCTVFN--VDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCS-------YICQHCLVHLGDIARYRNQTSQ  170 (497)
T ss_dssp             HHHHHHHHHHTC---------------------------------CCHHHH-------HHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHC--CChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhC-------CCHHHHHHHHHHHHHHcccHHH
Confidence            344444444433322  222 345566777788888888888887766442       2223577888999999999999


Q ss_pred             HHHHHHHHHhCCCCcc-hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHH
Q 006615          499 AINVLEEMIFSGIVPD-VQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY  563 (638)
Q Consensus       499 A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~  563 (638)
                      |...|++..+.  .|+ ...|+.|-..+...|+..+|...|.+..... .|-...+..|...+.+.
T Consensus       171 A~~~y~~A~~l--~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~~  233 (497)
T d1ya0a1         171 AESYYRHAAQL--VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSKA  233 (497)
T ss_dssp             HHHHHHHHHHH--CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH--CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHh
Confidence            99999999885  454 5789999999999999999999999988764 56788888888888877

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=95.97  E-value=0.45  Score=41.56  Aligned_cols=156  Identities=13%  Similarity=0.087  Sum_probs=73.8

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCHHhHHHHH
Q 006615          104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYST----SGDLELVLSTWNEYRQRAKLLSTESYNIVM  179 (638)
Q Consensus       104 ~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~A~~l~~~m~~~~~~p~~~~~~~li  179 (638)
                      .+..|-..+...+++++|.+.|++..+.|   +...+..|-..|..    ..+...|...++.....+   +......+.
T Consensus         4 ~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l~   77 (265)
T d1ouva_           4 ELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG   77 (265)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhccc
Confidence            44444455555666666666666665544   23334444444544    345666666666655554   233333333


Q ss_pred             HHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHhcccCCCccCHhHHHHHHHH
Q 006615          180 SVYAK----TGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVN----LGKLDSALEVFSALPLMRIKRTSKQYLILVEG  251 (638)
Q Consensus       180 ~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~  251 (638)
                      ..+..    ..+.+.|...++...+.|..   .....+...+..    ......+...+.....   ..+...+..|...
T Consensus        78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~L~~~  151 (265)
T d1ouva_          78 NLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACD---LNDGDGCTILGSL  151 (265)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH---TTCHHHHHHHHHH
T ss_pred             cccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhc---ccccchhhhhhhh
Confidence            33322    34556666666666554432   122222222221    2334555555554433   2344455555555


Q ss_pred             HHc----cCCHHHHHHHHHHHHhC
Q 006615          252 FVG----VERFDEAKSLLNEMRDD  271 (638)
Q Consensus       252 ~~~----~g~~~~A~~l~~~m~~~  271 (638)
                      |..    ..+...+...++...+.
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~a~~~  175 (265)
T d1ouva_         152 YDAGRGTPKDLKKALASYDKACDL  175 (265)
T ss_dssp             HHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             hccCCCcccccccchhhhhccccc
Confidence            543    23444455555544443

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.38  E-value=0.05  Score=53.52  Aligned_cols=166  Identities=10%  Similarity=0.047  Sum_probs=83.9

Q ss_pred             hhHHHHHHHHHHcCCCCCCChhHHHHHHHH--HHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHH
Q 006615           82 ADSALSIMEALKSNPNFSHNQSTLHALATV--LAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLST  159 (638)
Q Consensus        82 ~~~Al~~~~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l  159 (638)
                      +..+++.++...+.. ..++.......+..  ....+.++.+...+....+.. +++...+..+...+.+.|+.+.|...
T Consensus        65 y~~~ie~~r~~~k~~-~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~  142 (497)
T d1ya0a1          65 FKNQITTLQGQAKNR-ANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKP  142 (497)
T ss_dssp             THHHHHHHHHHHSCS-SCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------
T ss_pred             HHHHHHHHHHhcccc-cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHH
Confidence            445666676666442 22222222111111  122334444443333222211 23445566677777888888888877


Q ss_pred             HHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCC
Q 006615          160 WNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIP-NSRTYTVMIEHLVNLGKLDSALEVFSALPLMRI  238 (638)
Q Consensus       160 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~  238 (638)
                      ++......  | ..++..+...+...|++++|...|++..+.  .| +..+|+.|...+...|+..+|...|.+..... 
T Consensus       143 ~~~al~~~--~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l--~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-  216 (497)
T d1ya0a1         143 QSSSCSYI--C-QHCLVHLGDIARYRNQTSQAESYYRHAAQL--VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-  216 (497)
T ss_dssp             CCHHHHHH--H-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-
T ss_pred             HHHHhCCC--H-HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-
Confidence            76655433  1 356777778888888888888888888874  34 56788888888888888888888888776654 


Q ss_pred             ccCHhHHHHHHHHHHcc
Q 006615          239 KRTSKQYLILVEGFVGV  255 (638)
Q Consensus       239 ~p~~~~~~~li~~~~~~  255 (638)
                      .|-..++..|...+.+.
T Consensus       217 ~~~~~a~~nL~~~~~~~  233 (497)
T d1ya0a1         217 FPFPAASTNLQKALSKA  233 (497)
T ss_dssp             BCCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHh
Confidence            46677788887776553

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.71  E-value=0.19  Score=35.95  Aligned_cols=27  Identities=7%  Similarity=0.095  Sum_probs=13.2

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006615          174 SYNIVMSVYAKTGKNFEAVETFRQVID  200 (638)
Q Consensus       174 ~~~~li~~~~~~g~~~~A~~~~~~m~~  200 (638)
                      +++.|..++.+.|++++|++.+++..+
T Consensus        48 ~l~~Lg~~~~~~g~~~~A~~~y~~aL~   74 (95)
T d1tjca_          48 VLDYLSYAVYQQGDLDKALLLTKKLLE   74 (95)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHhcCChHHHHHHHHHHHH
Confidence            444444444555555555555554444

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.61  E-value=0.17  Score=36.19  Aligned_cols=63  Identities=11%  Similarity=-0.021  Sum_probs=30.6

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhCC------CCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 006615          105 LHALATVLAKSQRNHELKTLIGDISSSK------FLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRA  167 (638)
Q Consensus       105 ~~~li~~~~~~~~~~~a~~l~~~~~~~~------~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~  167 (638)
                      +-.+...+.+.|+++.|...|++..+..      ......+++.|..+|.+.|++++|...+++..+.+
T Consensus         8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~   76 (95)
T d1tjca_           8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD   76 (95)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC
Confidence            3344455555555555555555443210      01112345555555555555555555555555543

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=93.84  E-value=0.86  Score=33.70  Aligned_cols=66  Identities=12%  Similarity=0.077  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCC
Q 006615          481 LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVE  547 (638)
Q Consensus       481 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~  547 (638)
                      ..++..++.+.+.|+-+.-.++++++.+.+ +|+....-.+..||.+.|...++.+++.+..+.|++
T Consensus        87 e~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K  152 (161)
T d1wy6a1          87 EHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGEK  152 (161)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence            456677888899999999999999977644 678888888999999999999999999999999864

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=93.75  E-value=0.78  Score=34.96  Aligned_cols=81  Identities=12%  Similarity=0.048  Sum_probs=37.5

Q ss_pred             CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHc----cCC
Q 006615          186 GKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVN----LGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVG----VER  257 (638)
Q Consensus       186 g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~  257 (638)
                      .+.++|+++|++..+.|   +......|-..|..    ..+.++|.++|++..+.|   +......|-..|..    ..+
T Consensus        37 ~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d  110 (133)
T d1klxa_          37 INKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKN  110 (133)
T ss_dssp             SCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred             cCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCC
Confidence            34555555555555543   22333333333332    234556666666555443   22233333333333    345


Q ss_pred             HHHHHHHHHHHHhCC
Q 006615          258 FDEAKSLLNEMRDDG  272 (638)
Q Consensus       258 ~~~A~~l~~~m~~~g  272 (638)
                      .++|.+.|++..+.|
T Consensus       111 ~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_         111 EKQAVKTFEKACRLG  125 (133)
T ss_dssp             HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHCC
Confidence            566666666555544

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=92.34  E-value=1.6  Score=33.02  Aligned_cols=80  Identities=6%  Similarity=0.048  Sum_probs=34.2

Q ss_pred             CHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCH
Q 006615          152 DLELVLSTWNEYRQRAKLLSTESYNIVMSVYAK----TGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVN----LGKL  223 (638)
Q Consensus       152 ~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~----~g~~  223 (638)
                      +.++|...+++..+.|   +..++..|-..|..    ..+.++|.++|++..+.|   +......|-..|..    ..+.
T Consensus        38 ~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~  111 (133)
T d1klxa_          38 NKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNE  111 (133)
T ss_dssp             CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred             CHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCCH
Confidence            4444555555444444   23333333333332    234455555555555543   22233333333332    2345


Q ss_pred             HHHHHHHHhcccCC
Q 006615          224 DSALEVFSALPLMR  237 (638)
Q Consensus       224 ~~A~~~~~~m~~~g  237 (638)
                      ++|.++|+...+.|
T Consensus       112 ~~A~~~~~~Aa~~G  125 (133)
T d1klxa_         112 KQAVKTFEKACRLG  125 (133)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHCC
Confidence            55555555544443

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=90.16  E-value=2.6  Score=31.08  Aligned_cols=66  Identities=18%  Similarity=0.154  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC
Q 006615          208 RTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKF  274 (638)
Q Consensus       208 ~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~  274 (638)
                      .-+...++.....|+-|.-.+++..+.+.+ +++....-.+..+|.+.|...++-+++.+.-+.|+.
T Consensus        87 e~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K  152 (161)
T d1wy6a1          87 EHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGEK  152 (161)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence            334445555666666666666666644433 455555556666666666666666666666555543

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=88.76  E-value=1.1  Score=31.26  Aligned_cols=74  Identities=11%  Similarity=0.222  Sum_probs=57.1

Q ss_pred             ChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHHhhhCCC
Q 006615          495 RDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNL  569 (638)
Q Consensus       495 ~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~m~~~g~  569 (638)
                      +.-++.+-++.+....+.|+.....+-++||.+..++..|.++|+..+.+ ..++...|..+++-.--.+.+.|+
T Consensus        21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K-~~~~k~~y~yilqelkptl~ELGI   94 (105)
T d1v54e_          21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQELRPTLNELGI   94 (105)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHHHHHHHHHTC
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHhhHHHHhCC
Confidence            44456667777777888999999999999999999999999999988854 334566777776665555555555

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=86.82  E-value=1.8  Score=30.28  Aligned_cols=63  Identities=10%  Similarity=0.086  Sum_probs=38.2

Q ss_pred             ChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH
Q 006615          117 RNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMS  180 (638)
Q Consensus       117 ~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~  180 (638)
                      +.-++++-++.+......|++.+..+-+++|-+.+++..|.++|+..+.+ +.++...|..+++
T Consensus        21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K-~~~~k~~y~yilq   83 (105)
T d1v54e_          21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ   83 (105)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCcHHHHHHHHH
Confidence            33455555666666666677766677777777777777777777766654 2233445555543

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.16  E-value=2.7  Score=31.10  Aligned_cols=47  Identities=13%  Similarity=0.014  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHHhcCCCCC-HHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006615          153 LELVLSTWNEYRQRAKLLS-TESYNIVMSVYAKTGKNFEAVETFRQVID  200 (638)
Q Consensus       153 ~~~A~~l~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~  200 (638)
                      .++++.+|++....+ +.+ ...+-.|.-+|.+.|++++|.+.++.+.+
T Consensus        54 ~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~  101 (124)
T d2pqrb1          54 ERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE  101 (124)
T ss_dssp             HHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence            345555555555432 112 23444444555555555555555555555